Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 86 of 190
Found at i:13785294 original size:26 final size:26
Alignment explanation
Indices: 13785265--13785317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13785255 CCGGTCTGAT
* *
13785265 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
*
13785291 CTTAGACTAGGAATAAACTTTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
13785317 C
1 C
13785318 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:13787077 original size:26 final size:26
Alignment explanation
Indices: 13787026--13787078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13787016 CTGGTCCGAT
**
13787026 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13787052 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13787078 C
1 C
13787079 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13787961 original size:26 final size:26
Alignment explanation
Indices: 13787932--13787984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13787922 CCGGTCCAAT
* *
13787932 CTTAGACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13787958 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13787984 C
1 C
13787985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:13788716 original size:903 final size:900
Alignment explanation
Indices: 13786158--13789038 Score: 4109
Period size: 903 Copynumber: 3.2 Consensus size: 900
13786148 CCAGTCTGAT
* *
13786158 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAACCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * **
13786223 CGGCCAGAGGGGTGGGATGTGTAGGACGGGGATCGGTCGGGTCCCCCTCTGAGTGCTGTAGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
13786288 TGCTACCGCAACCCTCGGTCCGGTATGATCTTAGA-TAGGGAATGAACTCGGTATGCCTAAGACA
131 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* *
13786352 ACCGACGAAACGAGCGGCGGACGGGTGGGCGGGCGCTACGCCGGCCAGAGAAACGGGATGCGCAA
195 ACCGACGAAACGAGCGGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAA
* * * *
13786417 GCCGTGGATCGATAGGGTGGCATGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
13786482 TTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
13786547 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACAATTTTAAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * * * *
13786612 CGAAAGGAGTTTTGGCCCCAAGCTTTGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
455 CG-GAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
13786677 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
13786742 AGACACCTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
13786807 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAG---T--A-CCA--GCACATC
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGCACCCATCGCACATC
* *
13786864 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC-ATCGGTCAGGTTCTCC
714 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCT-GGTCAGGTTCTCC
** * * * * *
13786928 AGTGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGTACATGCCCGAGCCAAG
778 AGTGATGCTCCGACGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
13786993 CATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
842 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* *
13787052 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
13787117 CGGCCAGAGGGGC-AGGATGCGCCAGCCGGGGATCAACCGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
13787181 CTGCTGCTGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
13787245 GACCGACGAAAGAACCGAGCGGTCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
194 AACCGACG--A-AA-CGAGCGG-CGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAAACGGGAT
* * * *
13787310 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCAAAGTTCTACGTGCCA
254 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
13787375 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGATGTTTCATGG
319 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
13787440 CAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGA-TTTTTAAAA
384 CAAGACGACTCGTTTTCTATTTTTCACAATTTTAAAAACTTTTTGCGGTTCAGGATTTTTTAAAA
* ** *
13787504 TTTTTTCAGAAAATGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGC
449 TTTTTTCGGAGGA-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC
* *
13787569 ACAAAAAAATTCAGCTAAAAACTCGGAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCC
513 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
13787634 CATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
578 CATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
13787699 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCTATC
643 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CTGCACCCATC
* * * * * *
13787764 ACACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATTTCGCTGGTTAGT
707 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCTGGTCAGG
* *
13787829 TTCTCCGGTGATGCTCCAACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
772 TTCTCCAGTGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
13787894 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGTAATGAACTCCGTATG
837 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * * *
13787958 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCGCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
13788023 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTTCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
13788088 TGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13788153 CCGATGAAACGAGCGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGCAA
196 CCGACGAAACGAGCG-GCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAA
*
13788218 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *** * *
13788283 TTTTTATGGCCTGTAAATTTGCACAATGGTCCCATACA-CCTTCACGTGAAGTTTCATGGCAGGA
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA-AGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
13788347 TGACTCGTTTTCTATTTTTCACTATTTTAAAAACTTTTTGCGGTT-TGAGATTTTTTAAAATTTT
389 CGACTCGTTTTCTATTTTTCACAATTTTAAAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTT
** * * *
13788411 TTCGGATGGAGTTTTCACCCTAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCACAA
453 TTCGGA-GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
* * *
13788476 AAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTTCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13788541 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
13788606 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACT-GCACCCATCGCAC
** * * * * **
13788671 ATCATGCACGTACAGCCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCT
711 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCTGGTCAGGTTCT
* * * *
13788736 CCAGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCC
776 CCAGTGATGCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
13788801 AGCACGTGCTTCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCTATATG
840 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * *
13788862 CGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
13788927 CGGCCAGAAGGGCGGGATACGCAACCCGGGGATCGGTCGGGTCCTCCTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * **
13788992 TGCTGCCACAACCCTTGGTTTGGTCCAATCTTAGACTGGGAATGAAC
131 TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAC
13789039 ACCATATGGT
Statistics
Matches: 1763, Mismatches: 196, Indels: 46
0.88 0.10 0.02
Matches are distributed among these distances:
893 1 0.00
894 171 0.10
895 1 0.00
896 1 0.00
897 4 0.00
898 241 0.14
899 206 0.12
901 1 0.00
902 209 0.12
903 329 0.19
904 242 0.14
905 2 0.00
906 271 0.15
907 83 0.05
908 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACAATTTTAAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC
GGAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGCTGGTCAGGTTCTCCAGT
GATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
Found at i:13788887 original size:26 final size:26
Alignment explanation
Indices: 13788838--13788888 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13788828 GATCCGATCT
*
13788838 TAGACTGGGAATAAACTCTATATGCG
1 TAGACTGGGAATAAACTCCATATGCG
* *
13788864 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCATATGC
13788889 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCG
Found at i:13789515 original size:26 final size:26
Alignment explanation
Indices: 13789479--13789531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13789469 GTTGACTTAG
13789479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13789505 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13789531 G
1 G
13789532 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13791535 original size:26 final size:26
Alignment explanation
Indices: 13791499--13791551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13791489 TCAGTTTGAT
*
13791499 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13791525 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13791551 C
1 C
13791552 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13792439 original size:26 final size:26
Alignment explanation
Indices: 13792401--13792453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13792391 CCGGTCTGAT
13792401 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
13792427 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
13792453 C
1 C
13792454 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13793029 original size:903 final size:901
Alignment explanation
Indices: 13790539--13796827 Score: 8697
Period size: 902 Copynumber: 7.1 Consensus size: 901
13790529 NNNAAATGGT
* * * * *
13790539 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGAT
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
13790604 TGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * *
13790669 TAGCGTGCGGGTGCACAGTCGGCCATAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCT
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
* * * * **
13790734 CTCTGCATGCTG-CGATCCTGCTGCCGTAACCCTC-GATCCGGTCCAATCTTAGACT-GGGAATG
196 CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCAGTCTGATCTTAGACTAGGGAATG
* ** * * *
13790796 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGTGGGCGGGCGGGTGGGTACTACTCCGG
260 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGG
* *
13790861 CCAGAGAGACGGGATGCGGAAGCCGTGGATCGAAAGGGTGGTAGG-GGGTTTAGGCACATCTTCA
325 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
13790925 TATTTCTGCTTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
390 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
13790990 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCCGTT
455 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGTT
* * * ** *
13791055 T-GGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCTAATCTTTTATAGAC-AGATCCTT
519 TCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCC-AAAC-TTGGTAGACGTGATCCTT
* **
13791118 GTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACC
581 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
13791183 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTC
646 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
13791248 AAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
711 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
13791313 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCC
776 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCC
* * ** *
13791378 CAATGCCGGCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
840 CAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGATGATGGTGCCCCGACGAAGAAAAATGC
* ** * * **
13791441 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTAGTTCAGTTTGATCTTAGAC
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
13791506 TGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * **
13791571 GAACGTGCGGGTGCTTAACCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGTCGGGTCCCC
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
* * * * * * *
13791635 CTCTACGTGCTACCGATCATGTTGCCACAACCCTCAATCC-GATATGATCTTAGACTA-AGAATG
196 CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG-TCTGATCTTAGACTAGGGAATG
* * * * *
13791698 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGAC-GGCAGGCGGGCGGGCAGTACGTCGG
260 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGG
* * *
13791762 CCAGAGAGACAGGATGCGCCAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
325 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
13791827 TATTTCTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
390 TATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * *
13791892 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTCTCATGATTTTTAAAACTTTTTGCGGT
454 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTT
*
13791957 TCAGGATTTTTT-AAATTTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATACTTG
519 TCAGGATTTTTTAAAATTTTTTT-GGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTG
* *
13792021 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA
582 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
13792086 TTTAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCA
647 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
13792151 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
712 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
13792216 AAGTGCCAGCACCCATCGCACATCAGGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
777 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCC
* * * *
13792281 AATGCCGTCGATCAGGTTCTCCAACGATGCTTCGATGATGGTGCCCCGACAAAGAAAAATGC
841 AATGCCGCCGGTCAGGTTCTCCGACGATGC-TCGATGATGGTGCCCCGACGAAGAAAAATGC
* * *
13792343 GACACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
13792408 TAGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
13792473 GAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGACGGGGTCCCC
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
* * *
13792538 CTCTACGTGCTGCCCATCCTGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGA-TAGGGAATGA
196 CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGGAATGA
* * * * *
13792602 ACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCTGC
261 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGC
* *
13792667 CAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCAT
326 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * *
13792732 ATTTCTGTGTGTCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCAC
391 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * ** ** *
13792797 GTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCCCGATTTTCCAAACTTTTTATGTTTC
456 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTC
* *
13792862 AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGTTCCCAAACTTGCTAGACGTGATCCTTGTAT
521 AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTAT
13792927 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
585 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
13792992 GAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
650 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
13793057 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAG
715 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
13793122 TACCAGCACCCATCACACATCATGTGCGAACACCCCCCGGCCCCCCCGATCG-CGGAACCCCAAT
780 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAAT
* * * *
13793186 GCCGCCGGCCAGGTTCTCCGACGATG---G-TG--CGT----CGGCAAAGAAAAAT--
844 GCCGCCGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGC
*
13793232 -GCAGC-AC-CA------A---CA-CATGT-C-G--G-----CTCGGTCCGGTCCGATCTTAGAC
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
13793275 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACAAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * ** ** *
13793340 GATCGTGCGGGTGCTCAGCTGGCCAGAGGGCCGCAATGCATAAGTC-AGGGATCGACCGGGTCCC
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCC
* * **
13793404 CCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTA-GGAATG
195 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGGAATG
* *
13793468 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGACGGGCGGGCGGGCACTACGCCGG
260 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGG
* *
13793533 CCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
325 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
13793598 TATTTCTGCATGCAAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCA
390 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
13793663 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
455 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTT
* * *
13793728 CAGGATTTTTCAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
520 CAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
13793793 TTTTTCTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATT
584 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
13793858 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
649 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
13793923 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAA
714 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
13793988 GTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCGGAACCCCAA
779 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAA
* * * **
13794053 TGCCGTCGGTCAGGTTCT-CGACGATGCACCAGTGATGGTGCCCCGGTGAAGAAAAATGC
843 TGCCGCCGGTCAGGTTCTCCGACGATGCTCGA-TGATGGTGCCCCGACGAAGAAAAATGC
* * *
13794112 GGCACCAACTCATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTC-GTCCGGTCCGATCTTAGAC
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
** * *
13794176 TGGGAATGAACTCCGTATGCTTAGGTTGGGAAT-ATACTCCGTATACCTAACTCAACCCACGAAA
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
13794240 TGAGCGTGCGGGTGCTCAGCCGGCCTGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGATCCC
130 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCC
** **
13794305 CCTCTACGTGCTGCCGATCCTATTGCCGCAACCCTTGGTCCAGT-TCGATCTTAGACT-GGGAAT
195 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCT-GATCTTAGACTAGGGAAT
* * * *
13794368 GAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCAGGCAGGCGGGTGGGCGGGCACTACGTCG
259 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCG
*
13794433 GCCTG-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
324 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
13794497 ATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCACTTAAGCCTTC
389 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* ** * *
13794562 ACGTGAAGTTTCATTGTGAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGT
454 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGT
* **
13794627 TT-GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
518 TTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTG
*
13794691 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCA
582 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
13794756 ATTGAAAAAAGTGTCCCCATTTCA-ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCA
647 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * *
13794820 AATGCTCTTTAAGGGGCTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGACCAATATATATGTG
712 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-A-GGG
* *
13794885 CCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCATCGGGAA-
775 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTC-GGAAC
** *
13794949 CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCGACGATGGTGCCCCGACGAAGAAAAATGC
838 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGC
* * *
13795013 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGAC
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
13795078 TGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
** * *
13795143 GAGCGTGCGGGTGCTCAGCCAACCAGAGGGGCGGGATACGCAAG-CTAGGGATCGACCGGGTCCC
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCC
* *
13795207 CCTCTACGTGCTGCCGATGCTGCTGCCGCAACCCTCAGTCCGGAT-TGATCTTAGACT-GGGAAT
195 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAG-TCTGATCTTAGACTAGGGAAT
*
13795270 GAACTCCGTATGCCTAAGCCAATCGACGAAACGA----GCA----GGCGGGCGGGCACTACGCCG
259 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCG
*
13795327 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC
324 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
13795392 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTC
389 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
13795457 ACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
454 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GT
* ** * *
13795522 TTGA-GATTTTTTTTTAATTTTTATGGAAGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTT
518 TTCAGGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTT
* * * *
13795586 GTATTTTTGTTGGCGTGCACAAAAAAATTCAACTAAAAACTCGATGTGTACAAGATTTTGTGACC
581 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
13795651 ATTTGAAAAAAGTG-CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
646 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
13795715 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
711 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
13795780 CAAGTACCAGCACCAATCGCACATCATGTGTGCACACCCCCCCGGCCCCACCGATCGTCGGAACC
776 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACC
* * * * *
13795845 CCAATGCCACCGGTTAGGTTCTCCGACGATGCTCAGATTATGGTGCCCCGGCGAAGAAAAATAC
839 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GATGATGGTGCCCCGACGAAGAAAAATGC
*
13795909 GGCACCAGCA-ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
13795958 -----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
66 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
13796012 GAGCATGCGGGCGCTCA---GGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
131 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
* ** ** * **
13796074 CTCTGCGTGCTATCGATCCTGCTGTTGCAACCCTC-GATCCGGTCCAATCTTAGACTA-GGAATG
196 CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCAGTCTGATCTTAGACTAGGGAATG
* * * *
13796137 AACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGC-GAGCGGACGGACGGGCACTATGCCG
260 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCG
* *
13796201 GCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
324 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** *
13796266 ATATTTCTGCATGCCAATGCCATTTTTATTTCTTATAAATTCATACAATGGTCCCTTAAGCCTTC
389 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
13796331 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGACACTTTTTACGGT
454 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTT
* ** * *
13796396 TCGGGATTTTTTAAAATAGTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGT
519 TCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGT
*
13796461 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCAT
583 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
13796526 TTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
648 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
13796591 ATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCA
713 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
13796656 AGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGACCTCCCCGATCATCGGATCCTCA
778 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCA
* * * ** **
13796721 ATACC-CTCGGTCAGGTT-T-------T--TCGACGATGGTG-CCTGGTGAAGAAAAATAT
842 ATGCCGC-CGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGC
* * *
13796770 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGAT
1 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
13796828 GGGTTGACTT
Statistics
Matches: 4834, Mismatches: 445, Indels: 246
0.87 0.08 0.04
Matches are distributed among these distances:
861 25 0.01
862 36 0.01
863 4 0.00
864 1 0.00
865 3 0.00
866 127 0.03
867 719 0.15
868 30 0.01
869 60 0.01
870 4 0.00
871 5 0.00
872 6 0.00
873 163 0.03
874 351 0.07
875 2 0.00
876 5 0.00
877 2 0.00
878 12 0.00
880 2 0.00
881 4 0.00
882 2 0.00
883 2 0.00
885 2 0.00
886 3 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 14 0.00
892 2 0.00
893 6 0.00
894 66 0.01
895 270 0.06
896 255 0.05
897 3 0.00
898 4 0.00
899 92 0.02
900 318 0.07
901 485 0.10
902 1001 0.21
903 644 0.13
904 97 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
CTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTC
AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCCCCGACGAAGAAAAATGC
Found at i:13793297 original size:26 final size:26
Alignment explanation
Indices: 13793268--13793323 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
13793258 CCGGTCCGAT
13793268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13793294 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13793320 CTTA
1 CTTA
13793324 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13794198 original size:26 final size:26
Alignment explanation
Indices: 13794169--13794219 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13794159 CCGGTCCGAT
13794169 CTTAGACTGGGAATGA-ACTCCGTATG
1 CTTAGACTGGGAAT-ATACTCCGTATG
**
13794195 CTTAGGTTGGGAATATACTCCGTAT
1 CTTAGACTGGGAATATACTCCGTAT
13794220 ACCTAACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATATACTCCGTATG
Found at i:13795007 original size:901 final size:900
Alignment explanation
Indices: 13793252--13796827 Score: 5107
Period size: 901 Copynumber: 4.0 Consensus size: 900
13793242 CACATGTCGG
*
13793252 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * ** *
13793317 ATGCTTAAGTCAACCCACAAAACGATCGTGCGGGTGCTCAGCTGGCCAGAGGGCCGCAATGCATA
66 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * *
13793382 AGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCAG
131 AGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAG
* * *
13793447 -TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGAC
196 TTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGC
* *
13793511 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTA
260 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
13793576 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCAAATGCCATTTTTATGGCTCGTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
13793641 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
390 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
13793706 ATTTTTGAAACTTTTTGCGGTTCAGGATTTTTCAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAA
455 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
13793771 CTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAG
520 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
13793836 TGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
585 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
**
13793901 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
650 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
13793966 A-GGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGGC
715 AGGGGA-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
13794030 CCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCACCAGTGATGGTGC
779 CCCCC-GATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGA-TGATGGTGC
* * *
13794094 CCCGGTGAAGAAAAATGCGGCACCAACTCATGCCCGAGCCCAGCATGTGCTGTCGTAACC
842 CCCGGCGAAGAAAAATGCGGCACCAGC-CATGCCCGAGCCCAGCATGTGCTGTCGCAACC
**
13794154 CTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGTTGGGAAT-ATACTCCG
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCG
* * * *
13794217 TATACCTAACTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCTGAGGGGCGGGATGCAC
65 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCAC
* * * ** *
13794282 AAGCCGGGGATCGGCCGGATCCCCCTCTACGTGCTGCCGATCCTATTGCCGCAACCCTTGGTCCA
130 AAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCA
* *
13794347 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCAGGCAGGC
195 GTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGC
* * *
13794412 GGGTGGGCGGGCACTACGTCGGCCTG-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
260 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
13794476 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * ** *
13794541 ACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATTGTGAGACGACTCGTTTTCTATTTTTCACG
390 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
13794606 ATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
455 ATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
13794670 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
519 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
13794735 GTGTACAAAATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCA-ACACTTTAATGGCTACTGG
584 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
13794799 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTGTCAAGGTTTGATGAGGGA
649 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* *
13794864 TAGGGGACCAATATATATGTGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
714 TAGGGGACCAATATA-A-GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
** *
13794929 GCCCCCCTGATCATCGGGAA-CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCGACGATGGT
777 GCCCCCC-GATCATC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGATGATGGT
*
13794993 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
840 GCCCCGGCGAAGAAAAATGCGGCACCAGC-CATGCCCGAGCCCAGCATGTGCTGTCGCAACC
* *
13795055 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * *
13795120 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAACCAGAGGGGCGGGATACGCA
66 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * *
13795185 AGCTAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATGCTGCTGCCGCAACCCTCAGTCCGG
131 AGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAG
* *
13795250 ATT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAAC--G-A-GCA---
196 -TTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGC
13795307 -GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
260 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
13795371 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13795436 ACAATGGTCCCTTAAGACTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATG
390 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * ** *
13795501 ATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTTTAATTTTTAT-GGAAGGAGTTTTGGCCGCA
455 ATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTT-TCGGAAGGAGTTTTGGCCCCA
* * *
13795565 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAACTAAAAACTCGA
518 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
13795630 TGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTTAGACACTTTAATGGCTACTG
583 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
13795694 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
648 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * *
13795759 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGTGCACACCCCCCCG
713 ATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
* * * *
13795824 GCCCCACCGATCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGCTCAGATTATGGT
777 GCCCC-CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GATGATGGT
* * *
13795889 GCCCCGGCGAAGAAAAATACGGCACCAGCAATGCCCGAGCCCAGCATGTGCTGCCGCAA-C
840 GCCCCGGCGAAGAAAAATGCGGCACCAGCCATGCCCGAGCCCAGCATGTGCTGTCGCAACC
13795949 C-C--T-C-G---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
13795989 ATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCA---GGCTAGAGGGGCGGGATGCGCA
66 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
* * * ** ** * *
13796051 AGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGTTGCAACCCTCGATCCGG
131 AGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAG
* * * *
13796116 TCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGC-GAGC
196 TTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAG-GC
* * * * *
13796180 GGACGGACGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
260 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
13796245 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTCTTATAAATTCAT
325 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
13796310 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
390 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* ** *
13796375 ATTTTTGACACTTTTTACGGTTCGGGATTTTTTAAAATAGTTTCGGAAGGAGTTTTGGCCCTAAA
455 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
13796440 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
520 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
13796505 TGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGC
585 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
13796570 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGGTGAGGGAT
650 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * *
13796635 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGACC
715 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
13796700 TCCCCGATCATCGGATCCTCAATACC-CTCGGTCAGGTT-T-------T--TCGACGATGGTG-C
780 -CCCCGATCATCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCC
* * ** **
13796753 CTGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
843 CCGGCGAAGAAAAATGCGGCACCAGC-CATGCCCGAGCCCAGCATGTGCTGTCGCAACC
*
13796812 CTCGGTCCGATCCGAT
1 CTCGGTCCGGTCCGAT
13796828 GGGTTGACTT
Statistics
Matches: 2417, Mismatches: 212, Indels: 120
0.88 0.08 0.04
Matches are distributed among these distances:
861 24 0.01
862 36 0.01
863 4 0.00
864 1 0.00
865 2 0.00
866 120 0.05
867 1 0.00
868 1 0.00
869 60 0.02
870 4 0.00
871 5 0.00
872 4 0.00
873 160 0.07
874 353 0.15
875 1 0.00
880 1 0.00
885 2 0.00
886 1 0.00
890 1 0.00
891 1 0.00
893 1 0.00
894 65 0.03
895 269 0.11
896 254 0.11
897 1 0.00
898 3 0.00
899 90 0.04
900 326 0.13
901 391 0.16
902 232 0.10
903 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACA
AGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCAG
TTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGATGATGGTGCCCCG
GCGAAGAAAAATGCGGCACCAGCCATGCCCGAGCCCAGCATGTGCTGTCGCAACC
Found at i:13795102 original size:26 final size:26
Alignment explanation
Indices: 13795073--13795126 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
13795063 GATCCGATCT
13795073 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13795099 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
13795125 TA
1 TA
13795127 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:13796876 original size:26 final size:26
Alignment explanation
Indices: 13796840--13796892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13796830 GTTGACTTAG
13796840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13796866 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13796892 G
1 G
13796893 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13797777 original size:26 final size:26
Alignment explanation
Indices: 13797741--13797793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13797731 GTTGACTTAG
13797741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
13797767 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13797793 G
1 G
13797794 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13804320 original size:26 final size:26
Alignment explanation
Indices: 13804284--13804336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13804274 GTTGACTTAG
*
13804284 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
13804310 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
13804336 G
1 G
13804337 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:13805170 original size:26 final size:26
Alignment explanation
Indices: 13805140--13805192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13805130 GTTGACTTAG
*
13805140 GCATAC-AGAGTTCATTCTCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
13805166 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13805192 G
1 G
13805193 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13806075 original size:25 final size:26
Alignment explanation
Indices: 13806041--13806092 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13806031 GTTGACTTAG
13806041 GCATACGGAG-TCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
13806066 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
13806092 G
1 G
13806093 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:13807841 original size:26 final size:26
Alignment explanation
Indices: 13807805--13807855 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13807795 TTCACTTAGG
13807805 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
13807831 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
13807856 GATCAAACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:13808756 original size:26 final size:26
Alignment explanation
Indices: 13808705--13808758 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
13808695 TGGGTTGACT
* *
13808705 TAGGCATACGAAGGTTATTTCTAGTC
1 TAGGCATACGAAGGTTATTCCCAGTC
*
13808731 TAGGCATACGGA-GTTCATTCCCAGTC
1 TAGGCATACGAAGGTT-ATTCCCAGTC
13808757 TA
1 TA
13808759 ACATCGGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
TAGGCATACGAAGGTTATTCCCAGTC
Found at i:13809561 original size:897 final size:896
Alignment explanation
Indices: 13806937--13810368 Score: 4375
Period size: 897 Copynumber: 3.8 Consensus size: 896
13806927 GTTTACTTAG
* * *
13806937 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATTCCGAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG-G
* * *
13807002 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
13807067 ACCTGACCGGCGGCATTGGGGTTCTGACGATC-GAGGGGCCGGGGGGGTGTACGCACATGATGTG
130 ACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
** * * * * *
13807131 C-A-GTGGTTATGGTACTTGGCCCTTATATTGGGCCTCTATCCCTGATCAAACCCCAAGAACT-A
194 CGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
13807193 GCACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAA
258 -CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13807258 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTT--A-TTTTTAGCTGAATTTTTT
* *
13807323 TGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCATTCCAAAA
384 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAA
* * ** *
13807388 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAACTCGTGAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * **
13807453 TTGCCATGAAACTTGACGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
13807518 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTG
579 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
13807582 CGCATCCTGTCTCTCTGGCCGACATAGTG-CCCGCCCGT----CCACTCGTTTCCTCGGTTGGCT
644 CGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
* **
13807642 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAGT-GAGGGTTGCGACAGCAGGATC
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGCGGTAGCAGGATC
13807706 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGA
773 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGA
* * *
13807771 GCGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * ** *
13807830 ACATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT-GG
* ** ** *
13807895 CTCGGGGATGTGCTGGTGCTGCATTTTTCCTTCATCGGGGCACCATCACCGGAGCATCACCGGAG
65 CTCGGGCATGTGCTGGTGCCACATTTTT-CTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
13807960 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGTGGGTCGGGGGGGATGTGCGCACATGATG
129 AACCTGACCGACAGCATTAGGGTTCCGACGATCGGG-GGGGCCGGGGGG-TGTGCGCACATGATG
* * *
13808025 TGCGATGGCTGCTGGTACTTGGCACTTATATTGG-CCCCTATCGCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
13808089 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13808154 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTT--A-TTTTTAGCTGAATTTTTT
* * * *
13808219 TATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGGCCAAAACTCCTTTCGAA
384 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTTGGGGCCAAAACTCATTCCAAA
* * * * ** *
13808284 AAAATTTTAAAAAATCCCGAATCGTAAAAATTTTTTAAAATCATGAAAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
13808349 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * **
13808414 GCATTGGCA--CAGAAATATGTAGATGTCCCCAAACACACCTACCACCCTATCGATCCACCACTT
578 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
13808477 GCGCATCCCGTTTCTCTGGCCGACGTAGTGCCTGTCCTCCCGCCCGCTCGCTCGTTTCGTTGGTT
643 GCGCATCCCGTCTCTCTGGCCGACGTAGTGAC---CCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
* * * *
13808542 GGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATC-GAACCGGACCAAGGGTTGCGGTAGCAG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGTAGCAG
* * * * * * * *
13808606 GATTGGCAGCACGCAAAGGGTGACCCGACCGATCCTCGACTTATGCATCTCGCCCCTCTGGCCGG
769 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGG
* * * *
13808671 TTGAACGCCCGCACGCTCG-TTCTGTGGGTTGACTTAGGCATACGAAGGTT-ATTTCTAGTCTAG
834 TTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGAA-GTTCATTCCCAGTCTAA
* * * * *
13808734 GCATACGGAGTTCATTCCCAGTCTAACATCGGACCA-ATCCAAGGGTTGCGGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CCGAGGGTTGCGGCAGCACATGCT-G
* * * ** *
13808798 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGGATCGCCAAAT
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
13808863 AACCTGACCGACAGCATT-GGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCTCACATGATGTG
129 AACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
13808927 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATGAAGCCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
13808992 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13809057 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACAC-T-TTTTT-CCTGAATTTTTTTGTGC
324 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTATTTTTAGCTGAATTTTTTTGTGC
* * * *
13809119 ATGCCAACAAAAATACAAGGATCACGTCCACCATGTTTGGGGCCAAAACTCCATT-CGAAAAAAT
389 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CATTCCAAAAAAAT
* * * *
13809183 TTTAAAGAATCTCGAAGCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAACGAGTCGTCTTG
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTG
* * *
13809248 CCATGAAACTTCACGTGAAGGCTTAAGGTATCATTGCATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13809313 TGCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
582 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
13809378 ATCCTGCCTCTCTGGCTGCCGTAGTGCCCACCCGCCCG-CCGACCCGCTCGTTTCGTAGGTTGGC
647 ATCCCGTCTCTCTGGCCGACGTAGTG---ACCCGCCCGTCCG-CCCGCTCGTTTCGTCGGTTGGC
* * *
13809442 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAAGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATC
* * ***
13809507 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACGGA
773 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGA
* * *
13809572 GCAG-TCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
838 GC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** * *
13809631 GAAAACGGAGTTCAATAT-CCAATCTTGGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTC-AT-TCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
13809695 GCCTCGGGCATGTGCTGGTGCCACA---TT-TT--T--------C-T--T-----CA---CCGGA
64 G-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
13809735 GAACCTGTCCGACAGCATT-GGGTTCCGACGATAGAAGGGGTCGGGGGGGTGTGGGCACATGATG
128 GAACCTGACCGACAGCATTAGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATG
* *
13809799 TGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
13809864 ACACCCCCTTAAAGAGCATTTAAGATTTAATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
13809929 ATGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
322 ATGGGGACACT-TTTTTCAAATGCTCACAAAATCTTGTACACTT--A-TTTTTAGCTGAATTTTT
* * **
13809993 TTGTGCATGCCACCATAAATACAAGGATCATGTCTACCAAGTTTAAGGCCAAAACATC-TTCCAA
383 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC-TCATTCCAA
*
13810057 AAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
447 AAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
13810121 GTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
511 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
13810186 TGGCATTGTCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGC
576 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * ** *
13810251 TTACGCATCCCGTCTCTCTGGCTGACGTAGT-ACCCGCCCGTTCGTCCGCTTGTTTTATCGGCTG
641 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGACCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* * * *
13810315 GCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGTTCGAGGGTTG
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
13810369 TGGCAGCACA
Statistics
Matches: 2224, Mismatches: 263, Indels: 122
0.85 0.10 0.05
Matches are distributed among these distances:
873 35 0.02
874 183 0.08
875 72 0.03
876 3 0.00
879 167 0.08
880 108 0.05
881 2 0.00
883 1 0.00
884 1 0.00
892 1 0.00
893 79 0.04
894 125 0.06
895 172 0.08
896 258 0.12
897 435 0.20
898 66 0.03
899 2 0.00
900 54 0.02
901 141 0.06
902 16 0.01
903 50 0.02
904 250 0.11
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTATTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTTT
AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGACCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
GCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:13811097 original size:701 final size:697
Alignment explanation
Indices: 13809727--13811773 Score: 2871
Period size: 701 Copynumber: 2.9 Consensus size: 697
13809717 ACATTTTTCT
** * * * *** * *
13809727 TCACCGGAGAACCTGTCCGACAGCATTGGG-TTCCGACGATAGAAGGGGTCGGGGGGGTGTGGGC
1 TCACCGGAGAACCTAACCGACGGAATTGGGCATCCGAC-ATATCGGGGGGCGGGGGGGTGTGCGC
*
13809791 ACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
65 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
13809856 GAGAACTTACACCCCCTTAAAGAGCATTTAAGATTTAATAGGTTTGCTGCCAGTAGCCATTAAAG
130 GAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT-ACAGGTTTGCTGCCAGTAGCCATTAAAG
13809921 TGTCTGAAATGGGGACA-TATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
194 TGTCTGAAATGGGGACACT-TTTTTCAAAT-GTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
* * * * **
13809985 GAATTTTTTTGTGCATGCCACCATAAATACAAGGATCATGTCTACCAAGTTTAAGGCCAAAACAT
257 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCC-AAAC-T
* * * *
13810050 -CTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
320 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCTTAAAAAATAGAAA
*
13810114 ATGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
385 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
13810179 ATAAAAATGGCATTGTCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
450 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
13810244 ACACGGCTTACGCATCCCGTCTCTCTGGCTGACGTAGTACCCGCCCGTTCGTCCGCTTGTTTTAT
515 CCACGGCTTACGCATCCCGTCTCTCTGGC-CACGTAGTGCCTGCCCG--CGTCCGCTTGTTTTGT
* * * ***
13810309 CGGCTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGTTCGAGGGTTGTGGCA
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACA
*
13810374 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTT-CA-C-CGGAGCA
642 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCATCGCGGAGCA
* * ** *
13810427 TCGCCGGAGAACCTAACCGGCGGAATTGGGGTTCCGATA-ATCGGGGGGCCGGGCGGGGTGTGCG
1 TCACCGGAGAACCTAACCGACGGAATTGGGCATCCGACATATCGGGGGG-CGGG-GGGGTGTGCG
* *
13810491 CACATGATGAGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCT
64 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
13810556 CGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGACATTAAA
129 CGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATT-TACAGGTTTGCTGCCAGTAGCCATTAAA
*
13810621 GTGTCTAAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
193 GTGTCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
* * *
13810686 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACATCTACCCAGTTTGGGGCCGCAACTC
257 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCC-AAACTC
* * *
13810751 CTTCCGAAAAAATTTTAAAAAATCCCGAATCATAAAAAGTTTCAAAAATCTTAAAAAATAGAAAA
321 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCTTAAAAAATAGAAAA
*
13810816 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCA
386 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
13810881 TAAAAATGGCATTGGCATGCAGAAATATGAAGTTGTGCCGAAACCCACCTACCACCCTATCGATC
451 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
13810946 CACGGCTTACGCATCCCGTCTCTCTGGCCACCGTAGTGCCTGCCCGCCCGTCCGCTTGTTTTGTC
516 CACGGCTTACGCATCCCGTCTCTCTGGCCA-CGTAGTGCCTGCCCG--CGTCCGCTTGTTTTGTC
* *
13811011 GGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGTGTTGCAACAG
578 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAG
* *
13811076 TACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCACCATCGTCGGAGCA
643 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT---------CCATCG-CGGAGCA
* * *
13811141 TCACCGGAGAACCTGACCGACGGCATTGGGCATCCGACATATCGGGGGGCTGGGGGGTGTGCGCA
1 TCACCGGAGAACCTAACCGACGGAATTGGGCATCCGACATATCGGGGGGCGGGGGGGTGTGCGCA
* *
13811206 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT
66 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
13811271 AGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
131 AGAACTCAAACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* **
13811336 GTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACTCTTTGAGTTTTTAGCTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATG-TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA
* *
13811401 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-GCCAATTTGGGGCCAAACCTCCT
259 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAA-CTCCT
* * *
13811465 TCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCTTAAAAAACAGAAAACG
323 TCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCTTAAAAAATAGAAAATG
* * *
13811530 AGTCGTCTTGCAATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATA
388 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
13811595 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
453 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * * *
13811660 TGGCTTGCGCATCCTGCCTCTTTGGCCGGCGTA--G--TGCCCGC--CCGCTCGTTTCGTCGATT
518 CGGCTTACGCATCCCGTCTCTCTGGCC-ACGTAGTGCCTGCCCGCGTCCGCTTGTTTTGTCGGTT
* * * *
13811719 GGCTTAGGCATACGAAGTTCATTCCCAATATAAGATCAGACCGGATCGAGGGTTG
582 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG
13811774 TGGCAACAAG
Statistics
Matches: 1207, Mismatches: 115, Indels: 46
0.88 0.08 0.03
Matches are distributed among these distances:
699 5 0.00
700 31 0.03
701 583 0.48
702 2 0.00
704 64 0.05
706 1 0.00
708 6 0.00
710 1 0.00
711 4 0.00
712 226 0.19
713 231 0.19
714 44 0.04
715 9 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (697 bp):
TCACCGGAGAACCTAACCGACGGAATTGGGCATCCGACATATCGGGGGGCGGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAACTCCTTCC
GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCTTAAAAAATAGAAAATGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTACGCATCCCGTCTCTCTGGCCACGTAGTGCCTGCCCGCGTCCGCTTGTTTTGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCATCGCGGAGCA
Found at i:13813635 original size:26 final size:26
Alignment explanation
Indices: 13813598--13813650 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13813588 GTTGACTTAG
* *
13813598 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13813624 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13813650 G
1 G
13813651 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13814487 original size:904 final size:899
Alignment explanation
Indices: 13812738--13821165 Score: 10693
Period size: 904 Copynumber: 9.5 Consensus size: 899
13812728 GTTGACCTAG
* ** ** * *
13812738 GCATACGGAGTTCATT-CCTGTCTAAGATTCGATTGGATTGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
13812802 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGTGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
13812867 ACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTTTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG--TGTGCGCACATGATGT
* *
13812932 GCGATGGCTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
13812997 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13813061 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
13813126 GTGCATG-C--C----A-A-AA--A--A--TC--CCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
13813174 AATTTTAAAAAATCTCAAACTGTAAAAAG-TTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * *
13813238 TTACCGTGAAACTTCACATGAAGGCTTAAGGTACCATTGTTTGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13813303 CATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTA
582 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13813368 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCC-CCCGCCCGCTCGTTTCATCGGTTG
* * * *
13813433 GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCCA-G
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG-CAGG
* * * * * * * * *
13813497 ATCGACAGCACGTAGAGGGGGACCCGGCCTATCTCTGGCTTGCGCATGCCACCCCTCTTGCCTG-
773 ATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GA
* *
13813561 CTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13813624 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
13813689 CTTGGGCATGTGCTGGTGCGGCATTTTTCTTCG-CTGGGGTACCATCGCCGGAGCATCGTCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * * * *
13813753 AAACTAACCTGCGACATTGGGGTTCCGATGATCGGGGGGGGCCAGGGGGTGTGCACACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
13813818 GCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCTCTGTCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
13813883 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13813948 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
13814013 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
13814078 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAATGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13814143 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
13814208 ATTGGCAAGTAGAAATATAAAGATGTGCCAAAACCCACCTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13814273 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCATCCACCTGCCCGCTCATTTCATCGATTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC--CC-CCCGCCCGCTCGTTTCATCGGTTGG
* * * * *
13814338 CTTAGGCAGACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCAGCAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * ** ** * *
13814403 TGACAGCACATAGAGGGGGACTGGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGACTG
775 TGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * * * *
13814468 AGTGCCCGTACACTCGTTTCGTGGGTTGACTTAGACATGCGGAGTTCATTCCCAATCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13814528 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGAACCGGGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13814593 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCA---TC---G---C--CGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
13814647 ACCTGACCGGCGACATTAGGGTTCCGTCGATCGGGGGGGCCAGGGGGTTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
13814712 CGATGGGTGCTGGTACTTAGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
** * * *
13814777 ACCCATTTAAAGAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13814842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13814907 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCTTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
13814972 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGCCGTCCT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13815037 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
13815102 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
13815167 CATCCCGTTTATC-GGCCGGCGTAGTGCCCGCCCGCCCGCCAGCCGGCCTGCTCGTTTC-TCCGG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCC-CC-G-C--CC-GCTCGTTTCAT-CGG
* * * * * * *
13815230 TTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGTAGTA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCA
* * * *
13815295 GGATTGGCAGCACGCAGA-GGGGACCCAACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTG
771 GGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
13815359 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
836 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13815423 GCATACGCAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
13815488 CTTAGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCATCGGACA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** *
13815553 ACCTGACCGGCGGCATTGGGGTTCCGACGATTAGGGGGCCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
13815618 AATGGGTGCTGGTACTTGGCCCTTATATTGG-CCACTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
** * *
13815682 CCCATTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
13815747 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGC
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13815812 GCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** * *
13815877 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGACAAATAAAAAACGAACCGTCCTA
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
13815942 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
13816007 TGGCACATAGAAATACGAAGATGTTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TGGCATGTAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
13816071 CATCCCGTCTATCTGGCCGACGTAGTGCCCG-CCCGCCCGCCCCCTCGTTTCTTCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * *** * *
13816135 GGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACTAAGGGTTGCAATAGTAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGGC
* ** * *
13816200 AGCACGTAGA-GGGGACCCGACCAATCCTTGGATTGCGCATCCCGCCCCTCTAGCC-AGCTGAGC
779 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGC
* * *
13816263 GCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13816320 GCATATGCAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
13816385 CTCGAGCATCTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
13816450 ACCTGATCGGCGGCATTGGGGTT-CTAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
13816514 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
** * *
13816579 ACCCATTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
13816644 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13816709 TGCATGCCAAAAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
13816774 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGACAAATAGAAAATGAGCCGTCCT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
13816839 GCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTAAAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
13816904 TTGGGATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCACAACTTGCG
584 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
13816969 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCCCGCTTGTTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CC-CCCCGCCCGCTCGTTTCATCGGTTGGC
* * * * *
13817034 TTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACAGGACTGAGGGTTGTGGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATT
* * *
13817099 GGCAGCACGTAGAGGGGGACCC-AGTCGATCCCCGACTTGCGCATCCCGCCCATCTGGCC-AGCT
776 GGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CT
* * ** *
13817162 GATCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTACCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
13817223 GCATAAGGAGTTCATTTCCAGTCTAAGATTGGAACGGACCAAGGGTTACGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
13817288 CTCGGGCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCA---TC---G---C-T-GGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
13817342 ACCTGATCGGTGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACTTGATGTGG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
13817406 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
13817471 CCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
13817536 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTGTGTTTTAAGCTGAATTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTG
** ** * *
13817601 TGCATGCCAACAAAAATACAAAAATCACGTCTAAAAATTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** * *
13817666 ATTTTAAAAAATCTTGAACCACAAAATG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
13817730 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
13817795 ATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
583 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
13817860 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCCACCCGCCCGTTCATTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * * * * * **
13817924 AGGCATATGGAGTTCATTCCCAGTCTAATATCAAACTGGACCGAGAGTTACGACAGCAGGATCAG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGG
* * * * * *
13817989 CAGTATGTAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGCCCCTTTGGCCGACTGAGC
778 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * * *
13818054 GCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
13818111 GCATATGGAGTTCATTTCCAATCTAAGATTGGACCAGACAGAAGG-TGACGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTG-CGGCAGCACATGCTGG
* * *
13818175 GCTCGGGCATGTGCTGGTGCTGTATTTTTCATCGTCGGGG---CA----C----CATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
13818229 AACCTGACCGGCGGCATTGGGGTTCC-AGCAATCGGGGTGGCCGGGGGGGTGTGCACACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
13818293 TGCGATGGCTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAGCTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
13818358 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
13818423 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGAACACTTTGAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
**
13818488 TT-TGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
13818552 AAAATTTTAAAAAATCTCGAACCG-CAAAAGCTTTCGAAAATCATGAAAAATAAAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
13818616 TCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATCAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
13818681 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
580 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
13818746 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCACCCGCTCGTTTCGTCAGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCC-CCCGCCCGCTCGTTTCATCGGT
* * *
13818811 TGGCTTAGGCATAC-GAGTTCATTCCCACTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAG
* ** * * *
13818875 GATTGGCAACACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGA
772 GATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* *
13818940 CTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
13819003 G-AT-C-G-G---------A-TC--A-A---A-C--A--GAGGGTTACGATAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
13819043 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
** * ** * *
13819108 CCTGACCAACGACATTGGGGTTTTGGCGAT---------CGGGGGGTGTGCGCACAGGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
13819164 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
13819229 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
13819293 GGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
13819358 CATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGACAAAACTCCTTTCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
13819423 TTTAAAAATTCCGGAACTG-AAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
13819487 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
13819552 TGGCATGCAAAAATATGAAGATATGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
13819617 ATCTCGTCTCTCTGGCCGGTGTAGTGCCCG-----CCTGCCCGCTCG-TTCTATCGATTGGCTTA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCCGCCCGCTCGTTTC-ATCGGTTGGCTTA
* * * * *
13819676 GGCATATGGAGTTCATTCCCAGCCTAAGAT-AGGACCGGACTGAGGGTTGTGGCAACAGGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGCGGCAGCAGGATTGG
* * * * * * *
13819740 TAGCACGCA-AAGGGGACCCAACCGATGCCAGGCTTGCGCATCCCGCCCCTCTGGCCTG-CTGAA
778 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAG
* *
13819803 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13819861 GCATACAGAGTTCATTCCCAGTCTAATATCAAACCGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
13819926 CTCAGGCATGTGCTGGAGCCGTATTTTTCTTCG-CTTGGGCACCATC-ACTGGAGCATCGTCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCGTCGGA
* ** * * *
13819989 GAACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGTCGGGGGGGTTTGCGCACATGATGT
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
13820054 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCTCCCCTATCCCTCATCAAACCTCTAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCAAGAACTC
*
13820119 ACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13820183 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
13820248 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGCGGCCAAAACTCCGTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
13820313 AAATTTTAAAAAATCCTGAACTGCAAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
13820378 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
***
13820443 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
13820508 GCGCATCCTC-TCTCTCTGGCCGGCGTAGTGCCTGCCTACCTGCCCGCTCGCTCGTCTCATCGGT
646 GCGCATCC-CGTCTCTCTGGCCGGCGTAGTGCCCGCC--CC-CCCCGCCCGCTCGTTTCATCGGT
* ** ** * * * *
13820572 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAAACCGAGGGTTACAGTAGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAG
* * * * * * *
13820637 GATTGGCAGCACGCAGAGGCGAACCTGACCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCTG
772 GATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-G
* * * * *
13820702 -CT-AGCACCTGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T--
836 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
13820760 -C-TA---AG---------A-TC-AA-ATC-A---GACCGAGGGTTGCGGCAGCAAATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * **
13820804 TCGGGCATGTGCTGGTGTCACATTTTTC-TCG-CTGGGGAACCATCGTCAAAGCATCGTCGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * * * * * *
13820867 ACCTGACCGACGGTATTGGGAATCTGGCGATCAGGGGGGTC-GGGGGTGTTCGCACAAGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
13820931 GATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
13820996 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13821061 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13821126 GCATGCCAACAAAAATACAATGATCACATCTACCAAGTTT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
13821166 AGGCATACGA
Statistics
Matches: 6652, Mismatches: 734, Indels: 323
0.86 0.10 0.04
Matches are distributed among these distances:
857 3 0.00
858 127 0.02
859 57 0.01
860 1 0.00
861 1 0.00
862 1 0.00
865 5 0.00
866 370 0.06
867 146 0.02
868 2 0.00
869 2 0.00
870 1 0.00
871 2 0.00
872 2 0.00
873 1 0.00
874 47 0.01
875 199 0.03
876 59 0.01
877 86 0.01
878 2 0.00
879 2 0.00
880 2 0.00
882 4 0.00
883 4 0.00
884 101 0.02
885 3 0.00
886 96 0.01
887 245 0.04
888 319 0.05
889 292 0.04
890 185 0.03
891 199 0.03
892 496 0.07
893 617 0.09
894 188 0.03
895 377 0.06
896 94 0.01
897 383 0.06
898 427 0.06
899 1 0.00
900 4 0.00
901 6 0.00
902 96 0.01
903 321 0.05
904 962 0.14
905 74 0.01
906 40 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGGCAG
CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13815426 original size:26 final size:26
Alignment explanation
Indices: 13815397--13815449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13815387 GTTGACTTAG
* *
13815397 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
13815423 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
13815449 G
1 G
13815450 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:13818137 original size:26 final size:26
Alignment explanation
Indices: 13818085--13818137 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13818075 GTTGACTTAG
* *
13818085 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13818111 GCATATGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13818137 G
1 G
13818138 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13819871 original size:26 final size:26
Alignment explanation
Indices: 13819835--13819886 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13819825 GTTGACTTAG
13819835 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13819861 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13819887 TATCAAACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13821363 original size:26 final size:26
Alignment explanation
Indices: 13821327--13821379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13821317 GTTGACTTAG
* * *
13821327 GCATACGGAGTTTATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
13821353 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
13821379 G
1 G
13821380 AGCGGACCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:13822261 original size:26 final size:26
Alignment explanation
Indices: 13822224--13822276 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13822214 GTTGACTTAG
13822224 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
*
13822250 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
13822276 G
1 G
13822277 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:13822898 original size:900 final size:897
Alignment explanation
Indices: 13821164--13824652 Score: 4604
Period size: 904 Copynumber: 3.9 Consensus size: 897
13821154 TCTACCAAGT
* * ** * *
13821164 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGTAGCAGGA-T
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATT
* * * * * ** *
13821228 CAGCAGCACGTAGAGGGGGACCCGACCGATCCTTGGCTTACGCATCCCGCCCCTCCAGCCAGCTG
66 GA-CAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
13821293 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCGAGTCTAAGCATA
130 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATA
* * * * ** ** * * *
13821358 CGGAGTTCATTCCCAGTATAAGAGCGGACCGCACCAAGGGTTGTGGTATCACATGCTGGGCTAGA
195 CGGAGTTCATT-CCAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACATGCTGGGCTCGG
* * *
13821423 GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGTATCACCGGAGAACCTG
259 GCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTG
*** * *
13821488 ACCGGCGGCATTGGGGTTTTAACGATTGGGGGAGCCGGGGGGTGTGCGCACATGATGTGCGATGG
323 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
13821553 GTGCTAGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAAACTCAAGAACT--CACCCCC
388 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
13821616 TTAAAGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGAC
453 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
13821681 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTGTGCATG
518 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATG
* *
13821746 CCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCCAAAAAAATTTTA
583 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* ** *
13821811 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATG
648 AAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
13821876 AAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCA
713 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCA
* *
13821941 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
778 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
13822006 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
843 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
* *
13822061 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTGTGGCAGCAGGATT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATT
* * * * * *
13822126 GACAGCATGCAGTGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCTCTTTGGCCGGCTGA
66 GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * **
13822191 GCGCTCGCAAGCTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATAC
131 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATAC
* * *
13822256 GGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTTACAACAGCACATGTTGGGCTCGGG
196 GGAGTTCATTCC-AGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACATGCTGGGCTCGGG
* **
13822321 CATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTG
260 CATGTGCTGGTGCCGCATTTTTCTTC-TC-GGGGCACCATCGTCGAAGCATCACCGGAGAACCTG
* * * *
13822386 ATCGGCGGCTTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGG
323 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
13822451 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
388 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
13822516 TTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
453 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
13822581 ACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGATTTTTTAGCTGAATTTTTTTCAGCATG
518 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATG
* **
13822646 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAGAAA-TCCTTCTGAAAAAATTTT
583 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCAAAAAAATTTT
* * *
13822710 AAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCAT
647 AAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
13822775 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGGCAAGCCATAAAAATGGCATTGGC
712 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGC
* *
13822840 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCTACCCTATCGATCCACGGCTTGCGCATCC
777 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * ** *
13822905 CATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTAATTTCGTCGGTTGGC
842 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCG----CTCGTTTCATCGGTTGGC
** * ** * * *
13822965 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATGTG-CCTGAACTGAGGGTTGTGGTAGCTGGAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGCGGCAGCAGGAT
* * * * ** *
13823029 AGGCAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTGTGTGTCCCGCCCCTCTGGCCGGATG
65 TGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
13823094 ACCACCCACACGCTCGTTTCGTGGGTTGACATAGGCATACGATGTTCATTCCTAGTCTAAGCATA
130 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATA
* * * *
13823159 CGGATTTCATTCACAGTCTAAGATCGGACTAGATCGAGGGTTACGACAGCACATGCTGGGCTCGG
195 CGGAGTTCATTC-CAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACATGCTGGGCTCGG
* *
13823224 GCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTC-AGAGCATCACCGGAGAACCT
259 GCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGA-AGCATCACCGGAGAACCT
* * * * * *
13823288 GATCGACGGCTTTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGAA
322 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGAT
* *
13823353 GGGTGCTGCTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
386 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
13823418 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
451 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
13823483 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGAGCA
516 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCA
* *
13823548 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
581 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
*
13823613 TAAAAAATTCCGAACCACAAAAAGTTTTGAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCA
646 TAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
13823677 TGAAACTTCACGTGAAGCCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
711 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGG
* * * * * *
13823741 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCAGCCTATCGATCTACAGCTTGCGCATC
776 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
13823806 CCGTCTCTCTGGCCGGCGTAGT--------GCCCACCCGTTCGTTTCATCGGTTGGC
841 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
* * * *
13823855 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTAGACCAGACCGAGGGTTGCGACAGCAGGATT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATT
** * *
13823920 GACAGCACGCAGAATGGGACCCGATCGATCCTCGGTTTGCGCATCCCGCCCCTCTGGCCGACTGA
66 GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * * *
13823985 GCGCCCGCACGCTCGTTTTGTGGGTAGACTTCGGCATACGGAGTTCATTCCCAGTCTAA--A-AC
131 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATAC
* * *
13824047 CG-G---A---C---C--AGA-C---C--G----AGGGTTGCGGCAGCACATGCTGGGCTCGGGC
196 GGAGTTCATTCCAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGC
* **
13824090 ATGTGCTGGTGCCGTATTTTTCTT-T----G---C-T-G--G-AGCATCGTCGGAGAACCTGACC
261 ATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACC
* * *
13824142 GGTGGCATTGGGGTTCTGACGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
326 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13824207 TGTTGGTACTTGG-CC----A-T-------TA----TCATCAAACCTCGAGAACTCACACCCCTT
389 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
13824255 TAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGCGGACA
454 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
13824320 CTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTT-ATGCAT
519 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGA-GCAT
* * * * *
13824383 GTCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGGTCAAAACGCATTCCAAAAAAATTT
582 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAAAAAATTT
**
13824448 TAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
646 TAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
13824513 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGGCAAGCCATAAAAATGGCATTGG
711 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGG
* *
13824578 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATC
776 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
13824643 CCGTCTCTCT
841 CCGTCTCTCT
13824653 AGCTTGCATA
Statistics
Matches: 2310, Mismatches: 258, Indels: 108
0.86 0.10 0.04
Matches are distributed among these distances:
833 3 0.00
834 179 0.08
835 58 0.03
836 48 0.02
837 106 0.05
838 2 0.00
845 1 0.00
846 1 0.00
849 1 0.00
850 47 0.02
851 39 0.02
853 1 0.00
854 1 0.00
855 1 0.00
858 1 0.00
862 1 0.00
864 51 0.02
868 1 0.00
870 1 0.00
873 1 0.00
874 3 0.00
876 1 0.00
879 1 0.00
883 1 0.00
887 3 0.00
888 1 0.00
890 169 0.07
891 3 0.00
894 8 0.00
896 2 0.00
897 236 0.10
898 140 0.06
900 399 0.17
901 3 0.00
902 117 0.05
903 116 0.05
904 562 0.24
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (897 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATT
GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATAC
GGAGTTCATTCCAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGC
Found at i:13823167 original size:26 final size:26
Alignment explanation
Indices: 13823128--13823180 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13823118 GTTGACATAG
13823128 GCATACGATGTTCATTC-CTAGTCTAA
1 GCATACGATGTTCATTCAC-AGTCTAA
13823154 GCATACGGAT-TTCATTCACAGTCTAA
1 GCATAC-GATGTTCATTCACAGTCTAA
13823180 G
1 G
13823181 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGATGTTCATTCACAGTCTAA
Found at i:13825693 original size:26 final size:26
Alignment explanation
Indices: 13825663--13825715 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13825653 GTTGACTTAG
13825663 GCATACTG-AGTTCATTCCCAATCTAA
1 GCATAC-GAAGTTCATTCCCAATCTAA
*
13825689 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
13825715 G
1 G
13825716 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:13827087 original size:716 final size:713
Alignment explanation
Indices: 13825697--13827173 Score: 2348
Period size: 716 Copynumber: 2.1 Consensus size: 713
13825687 AAGCATACGA
* *
13825697 AGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGCTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
13825762 TGTGCTGGTGCCGCATTTTTTTTCACCAGGGCACCATCACTGGAGCATCACTGATGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACTGGAGCATCACCGATGAACCCGACC
* * *
13825827 GACGACATTAGGGTTCCGGTGATCGGGGAGCCGGGGGGTGTACGCACATGATGTGCAATGGGTGC
131 GACGACATTAGGGTTCCGGCGATCGGGGAGCCGGGGGGTGTACACACATGATGTACAATGGGTGC
*
13825892 TGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
13825957 AGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AAAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
13826022 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
* *
13826087 CAAAAATACAATGATCACATTTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAA
391 CAAAAATACAATGATCACATCTACCAAGCTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAA
* * **
13826152 ATCTCGAACCGCAATAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
456 ATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
* * *
13826217 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
521 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
*
13826282 AAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
586 AAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
13826347 CTCTGGCTTGCGTAGTGCCCACCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATGCGG
651 CTCTAGCTTGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATGCGG
* *
13826410 AGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGGAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
13826475 TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGAC-GGAGCATCGCCCGA-GAACCCGA
66 TGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATC-ACTGGAGCATC-ACCGATGAACCCGA
* * * * * *
13826538 CC-AGCGGCATTGGGGTTCCGGCGATTGGGGCGGCCGGGGGGGGTGTGCACACATGATGTACGAT
129 CCGA-CGACATTAGGGTTCCGGCGATCGGGG-AGCC--GGGGGGTGTACACACATGATGTACAAT
* *
13826602 GGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
13826667 CCTTAAAAAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGG
255 CCTTAAAAAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
13826732 ACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
320 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* *
13826797 TGCCAACAAAAATACAATGATCACATCTACCAAGCTTGGGGCCAAAACTGCTTCCGAAAAAATTT
385 TGCCAACAAAAATACAATGATCACATCTACCAAGCTTGGGGCCAAAACTCCCTCCGAAAAAATTT
*
13826862 TAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
450 TAAAAAATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
*
13826927 TGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAGTGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
13826992 CACGTAGAAGTATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
580 CACGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * *
13827057 TTGTCTCTCTAGCTTGTGTAGTGTCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
645 CCGTCTCTCTAGCTTGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
*
13827122 GTGG
710 GCGG
* * * **
13827126 AATTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
13827174 GTATCGATAG
Statistics
Matches: 697, Mismatches: 61, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
712 1 0.00
713 134 0.19
714 8 0.01
716 554 0.79
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCACTGGAGCATCACCGATGAACCCGACC
GACGACATTAGGGTTCCGGCGATCGGGGAGCCGGGGGGTGTACACACATGATGTACAATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AAAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
CAAAAATACAATGATCACATCTACCAAGCTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAA
ATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
AAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTAGCTTGCGTAGTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATGCGG
Found at i:13829725 original size:26 final size:26
Alignment explanation
Indices: 13829696--13829746 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13829686 GTTGACTTAG
* *
13829696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
13829722 GCATACGGAATTCATTCCCAATCTA
1 GCATACGGAATTCATTCCCAATCTA
13829747 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:13830645 original size:26 final size:26
Alignment explanation
Indices: 13830609--13830661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13830599 GTTGACTTAG
*
13830609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
13830635 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
13830661 G
1 G
13830662 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:13831608 original size:897 final size:900
Alignment explanation
Indices: 13828817--13834421 Score: 7266
Period size: 902 Copynumber: 6.3 Consensus size: 900
13828807 GTTGACTTAG
* * *
13828817 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
13828882 CTCGAGCATGTGTTGGTGTCACATTTTTCTTCACCGAGGCACTATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
13828947 ACCTGACCGACGGCACTAGAGTTCCGGCGATCGGGGGGGGCGACAGGGGGTGTGGGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGGC--CGGGGGGTGTGCGCACATGATG
* *
13829012 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAGCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13829076 ACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
13829141 ATGGGGACA-TGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 ATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
13829205 TTGTGCATGCCAAAAAAGGTACAAGGATCACGTCGACCAAGTTTGGGGCCTAAAA-TCCTTCCAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAA
* * * *
13829269 AAAGATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCG
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
13829334 TCCTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13829399 GGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
13829464 TACGCATCCCGTCTCTCCGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG--C-TTCGTTTCGTCGGT
* * ** * ** *
13829529 TAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGTTTAGACCGGATCGAGGGTTATAGTAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAG
* * * ** * *
13829594 GATCGGTAGTACGTAGAGGGGGACCCGATTGATCCTAGGCTTGCGCATCTCGCCCCTCTGGCCGG
773 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
13829659 CTCAGCACCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
13829722 GCATACGGAATTCATTCCCAATCTAGGATCAGACCCA-ACCGAGGGGTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTACGGCAGCACATGCTGG
* * ** **
13829786 GCTTGGGCATATGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
** * *
13829851 AACCTGACCGGTGGCATTGGGGTTCCGGCTATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
13829916 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
13829981 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
13830046 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAATACTTTGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*** *
13830111 GTGCATGCCGCCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
13830176 AATTTTAAAAAATTCTTGAACAGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATC
454 AATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
13830241 TTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
13830306 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
13830371 CGCATCCCGTCTTTCTGACCGGCATAGTGCCCGCCCGCCCGTTCGCCCGCTCGCCCACTCATTTC
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC---CGCCCGCT-------TCGTTTC
* * * * * *
13830436 GACGGGTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGG
702 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG
** * * ** * *
13830501 TGGTAGGATCGGTAGCACGTAGAGGGGGACAAGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCT
767 CAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
13830566 -GCCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
832 GGCC-GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
13830630 TCTAA
896 TCTAA
* * * * * * * *
13830635 GCATATGGAGTTCATTCCCAGCCTAAGATCGGACCGGATCAAGGGTTACAGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
13830700 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
13830765 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGAGGGTGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * ** * *
13830830 AATGGGTGCTGGTACTTGGCCCTTATATTGGGCCATTATCCCTCATCAAACCTTGACAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13830895 CCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAAT-
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13830959 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
13831024 GCATGCCAAAAAAAATACAAGGATCACGTCTATCATGTTTGGGGCCAAAACTCC-TCCAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * ** **
13831088 ATTTAAAAAACCCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATAAGTCGTCTT
456 TTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
13831153 GCCATGAAACTTCATGTGAAGGCTTAAGTGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
13831218 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
13831283 CATCCCGTCTCTCGGGCCGACGTAGTGCCCG-CCGCCCGCCCGCTT-GTTTCGTCAGTTGGCTTA
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTA
* * * * * * *
13831346 GGCATATGGAGTTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCGAC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGC
* * * *
13831411 AGCATGTAGAGGGGGACCTGATCTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCA
780 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
* ** *
13831476 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGACTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
13831532 GCATACGGAGTTCATTCCAAGTTTAAGATCGGACCAGACCGAGGGTTGCAGCAACATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
13831597 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCAT-GCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
13831661 ACCTGACCGACGGCGTTGGGGTTCCGGCGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
13831726 GATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
13831791 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
13831856 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
13831920 GCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTTGGGCCAAATCCCCTTTCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
13831985 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
13832050 CCATGAAACTTCACGTAAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCA
521 CCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
13832115 TTGAAACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13832180 CATCTCGTCTCTCTGGCCGCCGTAGTGCCCGCCAGTCTGCCCGCCCG-TTCGTTTCATCGGTTGG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC---C-GCCCGCCCGCTTCGTTTCGTCGGTTGG
* * * ** *
13832244 CTTAGGCATACGGAGTTCATTCCCACTCTAAGATTGAACCGGACCGATTGTTGCTA-CAGTAGGA
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-AGCAGCAGGA
* * * ** * * * * **
13832308 TCGGCCGCACGTAGAAGAGGACCCGGCCGGTCCCCGGCTTGTGCATCCCGCCCTTGTGGCCGGTT
775 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * * *
13832373 GAGCTCCAGCACTCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTTCCAGTCTAA
840 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
13832434 GCATATGGAGTTCATTCCCAGTCTAAGATCGCACCAGACTGAGGGTTATGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
13832499 CTCGGGCATGTGTTGATGTCGCATTTTTCTT-AGCCGGGGCACCATCGCCGAAGCATCGCTGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCA-CCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
13832563 AACCTGACCTACGGCATTGGGGTTCTGGCGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
13832627 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
13832692 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13832757 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTGTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** **
13832822 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGAAAAACTCCTTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
13832887 ATTTTAAAAAATCTCGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
13832952 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13833017 GTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
13833082 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCACCCGTCCGCTCATTTCGTTGGTT
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG---CCCG--C-TTCGTTTCGTCGGTT
* * * * * * *
13833147 GGATTAGGCATACAGAGTTCATTTCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGG
* * * * * * * *
13833212 ATCAGTAGCACATAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCTCGCCCCACTGGTCGAC
774 ATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * *
13833277 TGAGCGCCCGCACGCTTGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
13833339 G-AT-C--AG---------A--C------CGGACC--A---AGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
13833378 -TACGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACCGGAG
66 CT-CGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
13833442 AACCTGACCGACGGCATTGGAGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGT
* *
13833507 GCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
13833572 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGGCATTAAAGTGTCTGGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
13833636 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGATTTTTTAGCTGTATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
13833701 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAAATCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
13833766 AATTTTAAAAAATCCCGAAACGTAAAAAGTTT-AGAAAATCATGAAAAATAAAAAACGAGTCGTA
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTC
* *
13833830 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
13833895 CATTGGCACGCAAAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
13833960 CGCATCCCGTCTCTCTGGCCGACGTAGTACCCACCCGCCCGGTCG-TTCCTTTCGTCGATTGGCT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCT
* * * * * * *
13834024 TAGGCATACGGAGTTCATTCCCAATATAGGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCG
* * * * * *
13834089 CCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCACATCCCACCCCTCTGACCGACTGAG
778 GCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* **
13834154 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAG--T--
843 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
13834208 -C-TA---AG---------A-TC--AGATC-G----GACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** ** * ** * *
13834251 CTCAGACGTGTACTGGTGCCATATTTTTCTACGTCAGGGCACCATCGTCTGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
* ** * *
13834316 ACCTGACCGATGGCATTGGGGTTCCGATGATCAGGGGGGCCGGCGGGGTGTGCGCAAATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
13834381 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
13834422 ACAGTCTAAG
Statistics
Matches: 4129, Mismatches: 512, Indels: 150
0.86 0.11 0.03
Matches are distributed among these distances:
868 4 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 4 0.00
873 334 0.08
874 1 0.00
877 2 0.00
878 1 0.00
879 104 0.03
880 398 0.10
881 87 0.02
882 1 0.00
884 5 0.00
890 1 0.00
892 1 0.00
896 320 0.08
897 456 0.11
898 9 0.00
899 1 0.00
901 10 0.00
902 600 0.15
903 254 0.06
904 223 0.05
905 506 0.12
906 5 0.00
907 1 0.00
908 2 0.00
909 9 0.00
910 213 0.05
911 110 0.03
912 149 0.04
913 315 0.08
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13832444 original size:26 final size:26
Alignment explanation
Indices: 13832408--13832460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13832398 GTTGACATAG
*
13832408 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13832434 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13832460 G
1 G
13832461 ATCGCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13834460 original size:26 final size:26
Alignment explanation
Indices: 13834420--13834483 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
13834410 TGGCCCCCTA
13834420 TCACAGTCTAAGCATACGGAGTTCAT
1 TCACAGTCTAAGCATACGGAGTTCAT
*
13834446 TC-CTAGTCTAAGCATATGGAGTTCAT
1 TCAC-AGTCTAAGCATACGGAGTTCAT
13834472 TCACAGTCTAAG
1 TCACAGTCTAAG
13834484 ATTGGACCGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
25 1 0.03
26 33 0.94
27 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
TCACAGTCTAAGCATACGGAGTTCAT
Found at i:13836265 original size:880 final size:877
Alignment explanation
Indices: 13834454--13839197 Score: 5895
Period size: 877 Copynumber: 5.4 Consensus size: 877
13834444 ATTCCTAGTC
* * * * * * *
13834454 TAAGCATATGGAGTTCATTCACAGTCTAAGAT-TGGACCGGACCGAAGGTTG-CGA-CAGCACAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAAGGTTGTTGAGCAGCACAT
* * * * * **
13834516 GCTAGGCCCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCTTCGT
66 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
** * *
13834581 CGGAGAACCTGACC-AGCGGCATTGGGGTT-CGATGATC-GGGGGCCGGGGGGGTGTGTGCCCAT
131 CGGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACAT
*
13834643 GATATGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
195 GATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
13834708 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
13834773 TGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
325 TGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
13834838 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCATCC
390 TTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
13834903 GAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
454 G-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
13834968 CATCATGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAA
518 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
13835032 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGG
583 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
13835097 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGGCCCGCCCTCCCGCTCGTTTC
648 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCGCCC-GCCACTCGTTTC
* * * *
13835162 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATTAGATCAGA-TCGAGGGTTGTG
708 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCG
* ** *
13835226 GTAGCAGGATCGGTAGCACACAGAGGGGGA-CCGGATCGATCCCCAGCTTGCGCATCCTGCCCCT
772 GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGG-TCGATCCCTGGCTTGCGCATCCCGCCCCT
* *
13835290 CTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
836 CTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
* * **
13835332 TATGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGA-CTGAGG--GTTGCAGCAGCACA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAAGGTTGTTG-AGCAGCACA
* * *
13835393 TGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTT-TTCG-CAGGTGCACCATCGTCGGAGCATC
65 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATC
* *
13835456 ACCGGAGAACCTGATCGACGGCATT-GGGTTCCGGTG-TCGAGGGGGCCGGGGTGGGGTGTGCGC
129 ACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGG-GGGGTGTGCGC
13835519 ACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
191 ACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
13835584 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
256 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
13835649 TGTCTAAAATGGGGACACTTTTTTTAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTA
321 TGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
13835714 AATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
386 AATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-
* * **
13835779 TTCCGAAAAACTTTTGAAAAATCCCGAACCGTAAAAAG-TTGAGAAAATTATGAAAAATAGAAAA
450 TTCCGAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAA
* * * *
13835843 TGAGTCATCTTGCCATGAAACTTAACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGACC
513 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CC
* *
13835908 -TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGAT
577 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
13835972 CCACGGCTTGTGTATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGCCCGACCACTCGTT
642 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCACTCGTT
* * * * * *
13836037 TCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATTAGACCAGA-TGAACGGTTA
706 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG-AGGGTTG
* * * * ** *
13836101 CAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCTTGGCTTATGCATCCCACCCC
770 CGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCC
* * * *
13836166 TCTGGTCGACTGAGCACCCATACGCTTGTTTCGTGGGTTGACT
835 TCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
13836209 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAAGGTTGTT--GCAGCACAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAAGGTTGTTGAGCAGCACAT
* * ** * **
13836271 GCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGATCATCGT
66 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* * * * ** *
13836336 CGGAGAACCTAACCGACGGTATAGGGGGTTCCGAC-ATCGGGGGGTTGGGGGGAGGGGGTGTGCA
131 CGGAGAACCTGACCGACGGCAT-TGGGGTTCCGGCGATC--GGGG--GGCCGG-GGGGGTGTGCG
* * * *
13836400 CACATGATGTGCAATGGTTGCTGGTGCTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCT
190 CACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
13836465 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAATATCCATTAAA
255 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * *
13836530 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTTGACTTTTTAGTT
320 GTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
13836595 GAATTGTTTTGTGCATGCCAAAAAAAAATGCAAGGATCATGTCTATCAAGTTTGGGGCCAAAACT
385 GAATTTTTTTGTGCATGCC--AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * **
13836660 CCTTCTGAAAAATTTTAACAAATCCC-AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
448 CCTTCCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
13836724 GGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
513 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
13836789 TAAAAATGGCATTGGAACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
578 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * **
13836854 CACGGCTTGC-TATCCCGTCTCTCTGGCC-AGTGTAGTGCCCGCCCGCCCG--C-CCACTTATTT
643 CACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCACTCGTTT
* * *
13836914 CATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTG
707 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
* * * * * * *
13836979 GCAGCAGGATCGGCAGCACGTAGAAGGGGA-CCTGTCCGATCCCCGGCTTGCGCATCCTGCCCCT
772 GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGT-CGATCCCTGGCTTGCGCATCCCGCCCCT
* ** *
13837043 CTGGCCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACT
836 CTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
*
13837085 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAAGGTTG-CG-GCAGCACAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAAGGTTGTTGAGCAGCACAT
*
13837147 GCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA-CATCAC
66 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* * * * *
13837211 CGGAGAACCTAATCGGCGGCATTGGGGTTCTGGCGATCGAGGGGCCGGGGGGGTGTGCGCACATG
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATG
* * * * * *
13837276 ATGTGCAATGGTTGCTGGTGCTTGGCCCTTATATTGGCCACCTATCCCTCATAAAACCTTGAGAA
196 ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
13837341 CTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
261 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
13837406 GAAATGGGTACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAGTT
326 GAAATGGGGACACTTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
13837471 TTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCGAAACTCC-TCT
390 TTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-
* * ** *
13837535 CGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAG
453 CG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
13837600 TTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAA
517 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** *
13837665 AATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
582 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
13837730 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCACCCGCCCGCCCG-CATGCTCGTTTCGT
647 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCA--CTCGTTTCGT
* * * *
13837794 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCGGTA
710 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTA
* * * * * * * *
13837859 GTAGGATCGGTAGCACGCAAAGGGGGACCCGGTCAATCCCTGGCATACGCATCTCGCCCTTTTGG
775 GCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
* * * *
13837924 CCGACTAAGCACCCACACGCTCATTTCATGGGTTGACT
840 CCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
* * *
13837962 TAGGCATACGGAGTTCGTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGACCAA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG---AT-CAG-T-A----C---C----A--GACC-A
* * * * * * *
13838027 ATCGAGGGTTG-TGA-TAGCACGTGTTGGGCTCGAGCATGTGTTGGTGTCACATTTTTCTTCGTC
46 A---A-GGTTGTTGAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
13838090 GGGGCACGATCGTCAGAGCATCACCGGAGAACTTGACCGACGGCATTGGGGTTCCGGCGATCGAG
107 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-G
* *
13838155 GGGGCCGGGGGCGTGTGCGCACATGATGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCC
171 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGATGCTGGTACTTGGCCCTTATATTGGCC
* * *
13838219 CCCTATCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTT
235 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
13838284 TGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTG
300 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTG
* *
13838349 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
365 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTAC
** * * *
13838414 CAAGTTTGGGGTAAAAATTCCTTCCGAAAGAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAA
429 CAAGTTTGGGGCCAAAACTCCTTCCGAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * * * *
13838479 AAATAGTGAAAAATAGAAAACGAGTCGTCCTACCATGAAATTTCATGTGAAGGCTTAAGGGACCA
493 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
13838544 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
558 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * *
13838609 CACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTACCCTCCC
623 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * * *
13838674 CCCCGCCCGTTCA-T--TTT-GTCAGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
688 GCCCGCCCG-CCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * * * * ** * **
13838735 AGACCGGACCGAGGGTTACGGCAGTAGGATCGATAGCACGTAGAGGGGGACCCGACCAATCTTTG
752 AGACCAGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCTG
* * * * * * **
13838800 GCTTGCACATCCCGCCCTTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCATTTGTTGACT
817 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
* * * *
13838861 TAGGCATACGAAGTTCATTCCCAGTCTAAGTGTATGGAGTTCATTCCCAGTCCAAGATAAGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAA--G-AT-CAG-T-A---CCAGACC---A-AAG---G
* * * * * *
13838926 AACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGTATTTTTCTTCATCG
50 ---T---TGTTG-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
13838991 GGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCAGTGATCGGGG
108 GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG
* * * * * * *
13839056 GGGCGGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGGAGTTTGCCTTTATATTGGCCCCC
173 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCC
*
13839121 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
238 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
13839186 TGCCAGTAGCCA
303 TGCCAGTAGCCA
13839198 ATGCCATTTT
Statistics
Matches: 3375, Mismatches: 384, Indels: 193
0.85 0.10 0.05
Matches are distributed among these distances:
869 4 0.00
870 198 0.06
871 73 0.02
872 164 0.05
873 36 0.01
874 9 0.00
875 34 0.01
876 269 0.08
877 457 0.14
878 136 0.04
879 57 0.02
880 376 0.11
881 261 0.08
882 225 0.07
883 12 0.00
884 43 0.01
888 2 0.00
889 4 0.00
891 4 0.00
892 1 0.00
894 1 0.00
895 2 0.00
897 5 0.00
898 7 0.00
899 313 0.09
900 96 0.03
901 2 0.00
902 66 0.02
903 348 0.10
904 168 0.05
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAAGGTTGTTGAGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCACTCGTTTCGTCGGTTG
GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGA
TCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCACCCACACGCTCGTTTCGTGGGTTGACT
Found at i:13838001 original size:26 final size:26
Alignment explanation
Indices: 13837965--13838016 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13837955 GTTGACTTAG
*
13837965 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13837991 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13838017 AATCGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13839791 original size:26 final size:26
Alignment explanation
Indices: 13839755--13839807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13839745 CTGATCTGAT
*
13839755 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
13839781 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
13839807 C
1 C
13839808 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:13840014 original size:20 final size:20
Alignment explanation
Indices: 13839985--13840055 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
13839975 GATTAAACGA
* * *
13839985 GCGGGTGAGCAGATGGGTGG
1 GCGGGCGAGCAGACGGGCGG
*
13840005 GCGGGCGAGCGGACGGGCGG
1 GCGGGCGAGCAGACGGGCGG
*
13840025 GCGGGCGAGC-GAACGGGCAG
1 GCGGGCGAGCAG-ACGGGCGG
13840045 GCGGGCGAGCA
1 GCGGGCGAGCA
13840056 CTAAGCTGTC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.15, C:0.21, G:0.59, T:0.04
Consensus pattern (20 bp):
GCGGGCGAGCAGACGGGCGG
Found at i:13843795 original size:894 final size:893
Alignment explanation
Indices: 13840036--13845224 Score: 6362
Period size: 876 Copynumber: 5.8 Consensus size: 893
13840026 CGGGCGAGCG
* * * * * ** *
13840036 AACGGGCAGGCGGGCGAGCACTAAG-CTGTCTAGAGAGACAAGATGCGTAAGCCGTGGATCGATA
1 AACGAGCAGGCGGGCGGGCACTACGAC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* ** *
13840100 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGACTTGT
65 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* * * * * *
13840165 AGATTCATAGAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAAGACGAGTCGTTTTCTAT
130 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* * * *
13840230 TTTTCACGATTTTTGAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTTTGGAAGGGAGTTTTG
195 TTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAA-GGAGTTTTG
*** * * *
13840295 GCAATAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAA
* * *
13840360 ACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTGAAACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
13840425 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGAGGTTTGA
389 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
13840490 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * ** ** * * *
13840555 TCCCCTCGG-CCCCCTGAACACCGGAACCCCGACACCACCGGTCA-GTTTTTCAGATGATGCTCC
518 -CCCC-CGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTC-GACGATGCTCC
* * * * * *
13840618 GACGATGGTGCCCTGACGAAGAAAAATGTGACACTAGCACATGCCCAAGCCCAGCATGTGCTACC
580 GACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCC
* * * * * *
13840683 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
645 GCAACCCTCGGTCAGATCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
13840748 CTCTGTATGCCTAAGTCAAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGTGGGGCGGG
709 CTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * ** * * * ** *
13840813 ATGTGCAAGCTGGGGATCGGTTGGGTCCCCCTCTGCGTACTGCCGATGCTGCTATCGTAACCCTC
773 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
* * * * * *
13840878 GATCCGGT-TCAATCTTAGACTAGGAATGAACTCCATTTGCCTAAGCCAACCGATGA
838 GATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
13840934 AACGAGCGGGCAGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCG
1 AACGA----GCAGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
13840999 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
62 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
13841064 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTC
127 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
** * *
13841129 TATTTTTCA-TAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTCAAAATTTTTTTGGAAGGAGT
192 TATTTTTCACT-ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGT
* * * *
13841193 TTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCT
255 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCT
** * *
13841258 GGAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
320 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
13841323 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGCTCTCGAGGT
385 ATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
13841387 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
450 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** * * * *
13841452 CACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
515 CACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTCGACGATGCTCC
** * * * * * * * *
13841517 GGTGATGGTGCCC-CAGTGAAGAGAAATGTGGCACCAACACACGCCTGAGCCCAGCATGTGCTGC
580 GACGATGGTGCCCTGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGC
*
13841581 CACAA-CC-C--TC-G----G-TC------TGG--T---CT--G-AT-CTTAGACTGGGAATGAA
644 CGCAACCCTCGGTCAGATCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * * * * *
13841621 CTTTGTATGCCTAAGTCAACCAACAAAACGAACGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGA
709 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *** *
13841686 TGC-CTAAGTCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTATTGCAACCCTT
774 TGCGC-AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
* * * *
13841750 GATCTGATCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACTGACGA
838 GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
13841806 AACAAGCAGGCGGGTGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGAATGCACAAGCCGTGG
1 AAC--G-A-GC----AGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * * *
13841871 ATCGATAGAGTAGTAGGTGGGTTTAGGCACATCTTCAGATTTTTGCATGCCAATGCCATTTTTAT
58 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * *
13841936 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTCTCATTGCAGGATGACTCGT
123 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * * * *
13842001 TTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTAGAAAAG
188 TTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCG-GAAG
* * * * ** * * *
13842066 GAGTCTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTCTTCACATGCATAAAAACATTC
251 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT
* * * * *
13842131 AACTAAAAGCTCGAAGTATACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCATAGAC
316 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
13842195 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TCTCG
381 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
13842259 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATTGCACATCATGTG
446 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * * *
13842324 GGCACAGCCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
511 CGCACA-CCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTCGACGAT
* * ** * * *
13842388 GCTCCGACGATGCTG-GCTAGGTGAAGAAAAATGCGGCACCAACATATGCCTGAGCTC-AGCATG
575 GCTCCGACGATGGTGCCCT-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC-CAAGCATG
* * *
13842451 TGCTACCGTAACCCT---T--G----G-TC---CA---G--T---CT--G-AT-CTTAGACTGGG
638 TGCTGCCGCAACCCTCGGTCAGATCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
13842491 AATGAACTTCGTATGCCTAAATCAACCAACGAAACGAACGTACGGGTGCTCAGCCGGCCAGAGGG
703 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGG
* * * * *
13842556 GCAGGATGCGCAAGTCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCGGAA
768 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAA
* * * * * *
13842621 CCCTTGGTCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGA
833 CCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
13842682 AACGAGCGGACGGGCGGGCGGGCGGGTACTACGACGGCCAGAGACACGGGATGCGCAAGCCGGGG
1 AACGAGC--A--GGCGGGCGGGC----ACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
13842747 ATCGATAGGGTGGTAGGTGTGTTTAGCCACATCTTCATATTTCCACGTACCAATGCCATTTTTAT
58 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
13842812 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
123 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * *
13842877 TTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTCGAAAGGA
188 TTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGA
* *
13842942 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG
253 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAG
* * *
13843007 CTAAAAACTCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAATGTCCCCATTTCAGACACTT
318 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
13843072 TCATGGCTACTGGTTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAA
383 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
13843137 GTTTGATGAGGGATAGGGGGCCAATA-ATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
448 GTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
13843201 GCACACCCCCCGGCCCCCTCGATCGCCGAAACCCCAATGCCGCCTGTCAGGTTCTTCAACGATGC
512 GCACACCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTCGACGATGC
* * * *
13843266 TCCGACGATGGTACCCTGGCGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCAAGCATGTGCT
577 TCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCT
* * * *
13843331 GCCGTAACCCTCGGTCAGATCCGATCGTAGATTGGTAATGAACTCCGTATGCATAGACGGGGAAT
642 GCCGCAACCCTCGGTCAGATCCGATCTTAGATTGG-AATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
13843396 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCCTACGGGCGCTCAGTCGACCAGAGGGGCG
706 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * *
13843461 GGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCC
771 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
*
13843526 TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
836 TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
13843584 AACGAGCAGACGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAG
1 AACGAGCAGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* ** *
13843649 GGTGGAAGGTGGGTTTAGGCTTATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATA
66 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
*
13843714 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
* *
13843779 TTTCACTATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
196 TTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGG
*
13843844 CCCCAAACTTGGTAGACATGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAA
260 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAA
* * **
13843908 C-CTGAAGTGTACAAGAATATAT-TGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTGGT
325 CTC-GAAGTGTACAAG-AT-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
** * ** *
13843971 GGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGATGGAGTGAGTTCAT-GAGGTT
387 GGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTT
* *
13844035 TGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCAC
451 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * **
13844100 ACCCACCCGACCCCCCCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTC-TCTGGTGATGCTC
516 ACCC-CCCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTC-GACGATGCTC
* ** * *
13844164 CGACGATGCTGCCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
579 CGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGC
* * *
13844229 CGCAACCCTCGGTCCA-ATCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATG
644 CGCAACCCTCGGT-CAGATCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
13844293 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
707 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * * *
13844358 GAAGCACAAGCCGGAGATCGACCGAGTCCCCCTCTGCGTGTTGTCAATCCTGCTACTGCAACCCT
772 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * *
13844423 CGATCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCTAATCGATGA
837 CGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
13844480 AATGAGCGGGCGGGCAGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
1 AACGAGCAGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
13844545 GGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTA
66 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* * *
13844610 AATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGAAAGATGACTCGTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
* * * *
13844675 TTTCA-TGATTTTTCAAACTTTTTACGGTTTGGGACTTTTTTAAATTTTTTCGGAAGGAGGTTTG
196 TTTCACT-ATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTCGGAAGGAGTTTTG
* * *
13844739 GCCCCAAACTTGGTAGACGTGATCCTTGGATTTTTTTTGGCATGCACAAAAGAATTTAGCTAAAA
259 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAA
* * *
13844804 AATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
324 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
13844869 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
389 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
13844934 TGAGAGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
13844999 CCCCCGCCCCCCCGATCACTGAAACCCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
519 CCCCGGCCCCCCCGATCACCGAAACCCC-AATGCCGTCAGTCAGGTTCTTCGACGATGCTCCGAC
* * * * *
13845064 GGTGGTGCCTTGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCA
583 GATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCA
* * *
13845129 ACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
648 ACCCTCGGTCAGATCCGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
13845194 CGTACGCCTAAGCCAACCGACGAAATGAGCG
712 CGTATGCCTAAGTCAACCCACGAAACGAGCG
13845225 GCGGGCGGGC
Statistics
Matches: 3767, Mismatches: 436, Indels: 178
0.86 0.10 0.04
Matches are distributed among these distances:
870 1 0.00
871 1 0.00
872 152 0.04
873 35 0.01
874 99 0.03
875 95 0.03
876 1033 0.27
877 118 0.03
879 1 0.00
880 1 0.00
881 1 0.00
882 2 0.00
885 1 0.00
886 2 0.00
889 3 0.00
890 1 0.00
892 1 0.00
893 1 0.00
894 254 0.07
895 229 0.06
896 891 0.24
897 67 0.02
898 21 0.01
899 93 0.02
900 8 0.00
901 85 0.02
902 560 0.15
903 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
AACGAGCAGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
TTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCCGATCACCGAAACCCCAATGCCGTCAGTCAGGTTCTTCGACGATGCTCCGACGAT
GGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACC
CTCGGTCAGATCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
Found at i:13844281 original size:26 final size:26
Alignment explanation
Indices: 13844252--13844304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13844242 CCAATCTGAT
13844252 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
13844278 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
13844304 C
1 C
13844305 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13845177 original size:26 final size:26
Alignment explanation
Indices: 13845148--13845197 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13845138 CCGATCCGAT
13845148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13845174 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13845198 CGCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13845907 original size:26 final size:26
Alignment explanation
Indices: 13845878--13845930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13845868 CCGATCTGAT
*
13845878 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13845904 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13845930 C
1 C
13845931 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13846817 original size:26 final size:26
Alignment explanation
Indices: 13846779--13846831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13846769 CTGGTCCGAT
* *
13846779 CTTAGACTGGGAATGAGCATCGTATG
1 CTTAGACTAGGAATGAACATCGTATG
*
13846805 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACATCGTATG
13846831 C
1 C
13846832 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACATCGTATG
Found at i:13848426 original size:26 final size:26
Alignment explanation
Indices: 13848397--13848449 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13848387 CTGATCCGAT
* * *
13848397 CTTAGACTGTAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCATATG
*
13848423 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGAAATGAACTCCATATG
13848449 C
1 C
13848450 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCATATG
Found at i:13848921 original size:883 final size:883
Alignment explanation
Indices: 13846941--13849176 Score: 3355
Period size: 883 Copynumber: 2.5 Consensus size: 883
13846931 ATCCTGCTGC
* *
13846941 CACATCTTCATATTTCTACATGCCATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
1 CACATCTTCATATTTTTACATGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
13847006 AAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* ** * * ** *
13847071 TTTGCGGTTAGGGATTTTTTAAAATTTTTT-GGGAGGAATTTTGGCCCCAAACTTGGCAGAGGTC
131 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
**
13847135 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCTAGTGTACAAGATTTT
196 ATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
13847200 GTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAA-CATGTA
260 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCA-GTA
* **
13847264 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATA
324 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATA
*
13847329 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCTCGGCCCCCTCGAT-
389 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-CCACACCCCC-C-CGGCCCCCTCGATC
** * *
13847393 GCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGAAGAAAAATGCGACACC
451 GCTGGAACCCCAAAGCCACCGGTCAGGTTCTCCGGCAATGCTCCGACGAAGAAAAATGCGACACC
* ** * * *
13847458 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCCTAGATTGGGAA
516 AGCACATGCCCGAGCCCAGCATGTGCTACCAAAACCCTCGATCCGATCCGATCCTAGACTGGAAA
* ** *
13847523 TGAACCCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCAT
581 TGAACCCCATATGCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAT
*
13847588 ACGGGCCCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC
646 ACGGGCCCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGAGTCCCCCTCTGC
* * * * *
13847653 GTGCTACTAATCTTGCTGCCTCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGTACTCTGT
711 ATGCTACTAATCCTGCTGCCTCAACCCTCAGTCTGGTCCGAACTTAGACTAGGAATGAACTCTGT
* * *
13847718 ATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGACAGGCGGGCACTACGCCGGTCGAGAGA
776 ATGCCTAAGCCAACCGACGAAACGA---GGCGGACGGACAGGCAGGCACTACGCCGGCCGAGAGA
* *
13847783 CGAGATGCGCAAGCTGTGGATCGATAGGTTGGTAGGTGGGTTTAGG
838 CGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
13847829 CACATCTTCATATTTTTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTTTACATG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
13847894 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
65 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * ** * *
13847959 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGTACCAAGCTTAGTAGACAT
130 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
13848024 GATCCTTGTATTTTTCTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
195 GATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
13848089 TGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTA
259 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTA
13848154 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATA
324 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATA
*
13848219 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCCACACCCCCCCGGCCCCC-CGATCGCT
389 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACCCCCCCGGCCCCCTCGATCGCT
** * * * *
13848283 GGAACCCCAAAGCCGTCGGTTAGGTTCTTCGGCAATGCTCTGACGAAGAAAAATGTGACACCAGC
454 GGAACCCCAAAGCCACCGGTCAGGTTCTCCGGCAATGCTCCGACGAAGAAAAATGCGACACCAGC
* * * * *
13848348 ACATGCCCGAGCCCAGCATGTGCTACCAAAACCCTTGGTCTGATCCGATCTTAGACTGTAAATGA
519 ACATGCCCGAGCCCAGCATGTGCTACCAAAACCCTCGATCCGATCCGATCCTAGACTGGAAATGA
* * * *
13848413 ACTCCGTATGCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG
584 ACCCCATATGCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACG
* * ** **
13848478 GGCGCTCAG-CTGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATCGGTCGAGTCCTTCTCTGCAT
649 GGCCCTCAGTC-GGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCAT
*
13848542 GCTA-TCAATCCTGCTGCCAT-AACCCTCAGTCTGGTCCGAACTTAGACTGGGAATGAACT-TCG
713 GCTACT-AATCCTGCTGCC-TCAACCCTCAGTCTGGTCCGAACTTAGACTAGGAATGAACTCT-G
* * *
13848604 TATGCCTAAGCCAACTGACGAAACGA-GCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC
775 TATGCCTAAGCCAACCGACGAAACGAGGCGGACGGACAGGCAGGCACTACGCCGGCC-GAGAGAC
*
13848668 GGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
839 GAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** * * *
13848712 CACATCTTCATATTTTTATGTGCTGATGCCATTTTTGTGCCTTGTAAATTCATACAATGGTCCCT
1 CACATCTTCATATTTTTACATGC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
13848777 TAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACT
65 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* *
13848842 TTTTGCGTTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACAT
130 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* *
13848907 GATCCTTGTATTTTTTGTGGCATGCACAAAAATATTCAGCTAAAAACTCGAATTGTACAAGATTT
195 GATCCTTGTATTTTTT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
13848972 TGTGACCATTTGAAAAAAGTGTCCCCATCTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGT
259 TGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAACCAGT
13849036 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAAT
323 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAAT
13849101 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATCG
388 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACACCCCCCCGGCCCCCTCGATCG
13849165 -TCGGAACCCCAA
452 CT-GGAACCCCAA
13849177 TTCAGCTAAA
Statistics
Matches: 1227, Mismatches: 106, Indels: 34
0.90 0.08 0.02
Matches are distributed among these distances:
882 2 0.00
883 467 0.38
884 39 0.03
886 7 0.01
887 306 0.25
888 22 0.02
889 142 0.12
890 240 0.20
891 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (883 bp):
CACATCTTCATATTTTTACATGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACCCCCCCGGCCCCCTCGATCGCTGG
AACCCCAAAGCCACCGGTCAGGTTCTCCGGCAATGCTCCGACGAAGAAAAATGCGACACCAGCAC
ATGCCCGAGCCCAGCATGTGCTACCAAAACCCTCGATCCGATCCGATCCTAGACTGGAAATGAAC
CCCATATGCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACGGG
CCCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCT
ACTAATCCTGCTGCCTCAACCCTCAGTCTGGTCCGAACTTAGACTAGGAATGAACTCTGTATGCC
TAAGCCAACCGACGAAACGAGGCGGACGGACAGGCAGGCACTACGCCGGCCGAGAGACGAGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
Found at i:13849353 original size:236 final size:234
Alignment explanation
Indices: 13848940--13849411 Score: 784
Period size: 236 Copynumber: 2.0 Consensus size: 234
13848930 GCACAAAAAT
* *
13848940 ATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTTAG
1 ATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTTAG
*
13849005 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
66 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
**
13849070 CTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
131 CTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
13849135 TGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCA
196 --TGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCA
* *
13849176 ATTCAGCTAAAAACCCGAAGTGTCCAAGATTTTGTGA-CAGTTTGAAAAAAGTGTCCCCATTTTA
1 ATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATCTTA
* * *
13849240 GGCACTTTACTGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
65 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
13849305 TCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
130 TCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
13849370 ATGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCA
195 ATGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCA
13849410 AT
1 AT
13849412 GTAACCGGTC
Statistics
Matches: 221, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
234 37 0.17
235 2 0.01
236 182 0.82
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (234 bp):
ATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTTAG
ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCA
Found at i:13849559 original size:26 final size:26
Alignment explanation
Indices: 13849530--13849582 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13849520 CTGGTCTGAT
13849530 CTTAAACAGGGAATGAACTCCGTATG
1 CTTAAACAGGGAATGAACTCCGTATG
* ** *
13849556 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAAACAGGGAATGAACTCCGTATG
13849582 C
1 C
13849583 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACAGGGAATGAACTCCGTATG
Found at i:13850469 original size:26 final size:26
Alignment explanation
Indices: 13850440--13850492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13850430 CCTGTCCGAT
* *
13850440 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
13850466 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
13850492 C
1 C
13850493 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:13851039 original size:906 final size:896
Alignment explanation
Indices: 13849175--13853587 Score: 5686
Period size: 889 Copynumber: 4.9 Consensus size: 896
13849165 TCGGAACCCC
* *
13849175 AATTCAGCTAAAAACCCGAAGTGTCCAAGATTTTGTGA-CAGTTTGAAAAAAGTGTCCCCATTTT
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTT
* * * *
13849239 AGGCACTTTACTGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAG
65 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
13849304 TTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
130 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * **
13849369 CA--TGCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGTAACCGGTCAGGTTCTCCG
195 CATGTGCGCACACCCCCCGG-CCCCTCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCC-
* * * *
13849432 GTGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATACGATACCAGCACATGCCCGAGCCCAGC
258 G-CATGCT-C-ACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGC
* * * * * * *
13849497 ATGTGCTGCCGAAACCTTAGGTCCTGGTCTGATCTTAAACAGGGAATGAACTCCGTATGCTTAGA
320 ATGTGCTGCC-CAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * *
13849562 TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGGGGGCACTCAGCCGGCCA
383 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * ** * * * *
13849627 GAGGGGCAGGATGCGTAAGCTGGGGATCGACCGGGTCTACCTCTACGTGGTGTCAATCCTACTAC
448 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTAC
* * ** * * *
13849692 CGTAACCCTCGGTCCGGTCCAATCTTAGACTGGCAATGAACT-TAGTATGCCTAAACCAACCTAC
513 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTA-TATGCCTAAGCCAACCGAC
* * * * *
13849756 GGAACGAGCGGGCGGGCGGGCAGGCGGGCGAGCACTACGA-CGGCCAGAGAGACGGGTTACGCAA
577 GAAATGAGCGGGCGAGC--G--GGCGGGCG-GCACTAC-ACCGGCCAGAGAGACGGGATGCGCAA
* * *
13849820 GTCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCA
636 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
13849885 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
701 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** ** * **
13849950 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTAGGATTTTTTTTATTTTTTT
766 GACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGGA-TTTTTTAAAATTTTT
* * *
13850015 TCGGAAGGAGTTTTGGCCCCAAACAAGGCAGAAC-TGATCCTTGTATTTTTGTTGGCATGCACAA
830 TCGAAAGGAGTTTTGGCCCCAAACATGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAA
13850079 AAA
894 AAA
* * *
13850082 AATTCAGCCAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
*
13850146 GACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
13850211 TCTTGAGTTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
13850276 ATGTGCACACACCTCCCCCGGCCCTCTCGATCGTCAGAACCCCAAATGTCGCCAGTCAGGTTCTC
196 ATGTGCGCACA-C-CCCCCGGCCC-CTCGATCGCCGGAACCCC-AATGTCGCCGGTCAGGTTCTC
* *
13850341 CGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATACGGCCCCAGCACATGCCCGAGCCCA
257 CG-C-ATGCT-C-ACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCA
*
13850406 GCATGTGCTGTCCCAACCCTTGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
318 GCATGTGCTG-CCCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * *
13850470 GACTGGGAATGAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACCCAGTCGGC
381 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * *
13850535 CAGAGGGGCGGGATGCACGAGCTAGGGATCGACCGGGTCCCCCTTTGTGTGCTATTGATCCTGCT
446 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* **
13850600 ACCGCGACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGA
511 ACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGA
* * * * *
13850665 CGAAATGAGCGGGCGAGCGGGCGGGCTGTCACTACATCGACCTGAGAGACAGGATGCGCAAGCCG
576 CGAAATGAGCGGGCGAGCGGGCGGGC-GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
13850730 TGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
640 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
* * *
13850795 TTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTGTCATGGCAAGACGACT
705 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
13850860 CGTTTTCTATTTTTCATGATTTTTTAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
770 CGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
* ** * *
13850925 AGGATTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
835 AGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
13850987 AATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* *
13851052 GACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
13851117 TCTCAAGGTTTGATGAGGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGGACAT
131 TCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
13851182 CATGTGTGCACA-CCCCCGACCCCCCTGATCGCCGGAACCCCAATGCCGCCCGTCAGGTTCTCCG
195 CATGTGCGCACACCCCCCGGCCCCTC-GATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCC-
* * * * * *
13851246 GCATTGCTCTGAGGATGGTGCCCC-AGCGAAGACAAATACGGCACTAGCACATGACCGAGCCTAG
258 GCA-TGCTC--ACGATGGTGCCCCGA-CGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAG
* * * * *
13851310 CATCTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTACA
319 CATGTGCTGCC-CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * *
13851375 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGTCGTTCAGCCGACCA
383 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * ** * *
13851440 GATGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCAATCCTGCTGC
448 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTAC
* ** * * * * * **
13851505 CGCAACCATTGGTCGGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTAAG-AAATTTGAC
513 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAA-CCGAC
** * *
13851569 GAAATGAGCGGGC-A------GGTAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTG
577 GAAATGAGCGGGCGAGCGGGCGGGCGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
13851627 GATCGATAGTGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
642 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
* * * *
13851692 TGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACAACTCA
707 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
13851757 TTTTCTATTTTTCATGATTTTTGAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTGGAAAA
772 TTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
*
13851822 GAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
837 GAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
13851882 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* *
13851947 GACACATTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
13852012 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCGTACATC
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
13852077 ATGTGCGCACACCCCCCGGCCCCCCCATCGCTGGAACCCCAAT-ACTGTCGGTCAGGTTCT-C-C
196 ATGTGCGCACACCCCCCGGCCCCTCGATCGCCGGAACCCCAATGTC-GCCGGTCAGGTTCTCCGC
* * *
13852139 --G---ACGATGGTGCCCCGACGAAGAAAAATATGACACCAGCACATGTCCAAGCCCAGCATGTG
260 ATGCTCACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTG
* * *
13852199 CTGCTGCAACCCTCGGTATGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
325 CTGC-CCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
** ** *
13852264 ATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCCTGAGGGG
389 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
13852329 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCTTGTTGCCACAAC
454 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAAC
* * * * * *
13852394 CCTTAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGA
519 CCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGA
* * * * * ** * *
13852459 ACGGGCAAGCGAGAGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCACAAGCTGTGGATCGA
584 GCGGGCGAGCGGGCGGGC-GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
13852524 TAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTT-TGTGTGCCAATGCCATTTTTATGGCTT
648 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
13852588 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCT
713 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
13852652 ATTTTTCACGATTTTT-AAAACTTTTTATGGTTCGAGATTTTTTAAAATTATTTCGAAAGGAGTT
778 ATTTTTCACGATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTT
* *
13852716 TTGGCCCCAAACTTGGTGGACGTGATCCTTGTAATTTTT-TTGGCATGCACAAAAA
842 TTGGCCCCAAACATGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAA
*
13852771 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAGTGTCCCCATTTTA
1 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* *
13852836 GACACTTTAATGGCCATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
66 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** *
13852901 TCTTAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
131 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
13852966 ATCTGCGCACACCCCCCGGCCCC-CTGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT-C-C
196 ATGTGCGCACACCCCCCGGCCCCTC-GATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGC
* * * *
13853028 --G---ACGATGGTGCCCCGCCAAAGAAAAATATGACACCAGCACATGCTCGAGCCCAGCATGTG
260 ATGCTCACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTG
** * *
13853088 CTGTTGCAACCCTCGGTATAGTCCGATCTTAGACTGGGAATGAACT-TGTATGCTTAGACTGGGA
325 CTG-CCCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
** * * * *
13853152 ATGAACTCCGTACACCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGA
389 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ** * * **
13853217 CGGGATGTGTAAGCCGGGGGTCGGTCGGGTCCCCCTCTGCATGCTGTTGATCCTGCTACTACAAC
454 CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAAC
* * * ** *
13853282 ACTC-GATTCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAGGCCAACCGACGAAATG
519 CCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATG
* * * *
13853346 AGCGGGCGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCG
583 AGCGGGCGAGCGGGCGGGC-GGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** * *
13853411 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATATTTAAGGCT
647 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCT
13853476 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
712 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
13853541 TATTTTTCACGA-TTTTAAAAACTTTTTGCGGTTCAGGATTTTTTAAA
777 TATTTTTCACGATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAA
13853588 GGTTTGATGA
Statistics
Matches: 3096, Mismatches: 365, Indels: 107
0.87 0.10 0.03
Matches are distributed among these distances:
883 269 0.09
884 4 0.00
888 277 0.09
889 521 0.17
890 135 0.04
891 78 0.03
893 2 0.00
894 84 0.03
895 418 0.14
896 2 0.00
902 10 0.00
903 296 0.10
904 25 0.01
905 111 0.04
906 427 0.14
907 95 0.03
908 10 0.00
909 4 0.00
910 230 0.07
911 96 0.03
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCTCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGCA
TGCTCACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCC
TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGC
GGGCGAGCGGGCGGGCGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
CCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
Found at i:13852255 original size:26 final size:26
Alignment explanation
Indices: 13852226--13852278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13852216 ATGGTCTGAT
13852226 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
13852252 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13852278 C
1 C
13852279 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13855641 original size:26 final size:26
Alignment explanation
Indices: 13855605--13855657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855595 CTGGTCTGAT
13855605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13855631 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13855657 C
1 C
13855658 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13856164 original size:897 final size:892
Alignment explanation
Indices: 13853587--13856402 Score: 4104
Period size: 903 Copynumber: 3.1 Consensus size: 892
13853577 GATTTTTTAA
* * * *
13853587 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGC-TCCATCGCACACCATGTT
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
13853651 CGCACACCCCCTG-GCCCCCCTATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
66 CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG-CATG
* * * *
13853715 CTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCGCAGCATGTGC
130 CTCCGAGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
13853780 TGCCACAA-CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGTTTAGACTGGGAA
195 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAA
* * *
13853844 TGAAATTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CTGGCCAGAGGGG
260 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GACCAGAGGGG
* * * * * * * *
13853908 TGGGATGCATAAGTCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCAATCCTGTTGCTACAAC
324 CGGGATGCGTAAGT-GAGGATCGATCGGGTCCCTCTATGCGTGCTGCCGATCCTGCTGCCACAAC
* * **
13853973 CCTCGGTCCGG-TCTGATCTTAGACTGGGAATAAACTTTGTATGCCTAAGCCAACCGACGAAACG
388 CCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
13854037 AGCGGGCGGGCGGGCACTATGCCAGCCAGAGAGATGGGATGCGGAAGCCGTGGATCGATAGGGTG
452 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
13854102 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATA
517 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATA
13854167 CATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTTTATTTTTC
582 CATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTTTATTTTTC
* * *
13854232 ACCATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCC
647 ACGATTTTTGAAACTTTTTA-CGTTCGGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*
13854297 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
711 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
13854362 AAGTGTACAAGATTTTGTGACCATTTGCAAAAACTGTCCCCATTTCATACACTTGAATGGCTACT
776 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT
*
13854427 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
841 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
13854479 AGGTTTAATGAGGGATAGGAGGCCAATGTAAGGGCCAAGTACTAGCAACCATCGCACATCATGTG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
13854544 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACAATG
66 CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC-ATG
* * * * * *
13854609 CTCCG-GCAATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCCCATGCTCGAGCCCAACATGTG
130 CTCCGAG-GATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
13854673 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTACGATTAGACTGGGA
194 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGA
* * * *
13854738 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAGTCGACCAGAGGGG
259 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGG
* * * * * * *
13854803 CGGGATGCGCAAGTCAGGGATCGACCAGGTCCCTCTCTGCGTCCTGTCGATCCTGCTGCCACAAC
324 CGGGATGCGTAAGTGA-GGATCGATCGGGTCCCTCTATGCGTGCTGCCGATCCTGCTGCCACAAC
* * * * * * * * *
13854868 CCTCGATCTGATCCAATCTTAGATTGGGAAAGAGCTCCGTATGCCTAAGCCAACTGACGAAATGA
388 CCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
13854933 GCAGGCAGGCGAGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCCA
453 GC--G--GGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
13854998 TAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
510 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
*
13855063 GTAAATACATACAATGGTCCCTTAAGCCTTGACGTGAAGCTTCATGGCAAGACGACTCATTTTTT
575 GTAAATACATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTTT
* * *
13855128 ATATTTCACGGTTTTTGAAACTTTTTACGGTTCGGG-CTTTTTAAAAATTTTTTCGGAAGGAGTT
640 ATTTTTCACGATTTTTGAAACTTTTTAC-GTTCGGGAATTTTT-AAAATTTTTTCGGAAGGAGTT
13855192 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
703 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
13855257 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-TCCCCCATTTCAGACACTTTA
768 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAAACACTTTA
13855321 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
832 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
13855382 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACACCAGCACCCATCGGACATCATG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT--ACCAGCACCCATCGCACATCATG
* * * * * *
13855447 TGTGCACACCCCTCGACCCCCCCGATCGCCAGAACCTCAATGCCGTCGGTCAAGTTCTCCGGCAT
64 TGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCA-
* * *
13855512 TGCTCCGAGGATGGTTCCCC-AGCGAAGAAAAGTACGGCACTAGCACATGCCCGAGCCCAGCATG
128 TGCTCCGAGGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
13855576 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
192 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGG
* * * *
13855641 GAATGAACTCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCACTCAGTCAACTAGAGG
257 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGG
* * *
13855706 GGCGGGATGCGTAAGCTGAGGATCGATCGGGTCCCTCTATGTGTGCTACCGATCCTGCTACCACA
322 GGCGGGATGCGTAAG-TGAGGATCGATCGGGTCCCTCTATGCGTGCTGCCGATCCTGCTGCCACA
* *
13855771 ACCCTCGGTCTGGTTCGATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC
386 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
13855836 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGATACGGCATGCGCAAGCCGTGGATCGATAGGGT
451 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
13855901 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCAATTTTTATGGCTTGTAAAT
516 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * * * *
13855966 TCATAAAATGGTCCCTTAAACCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
581 ACATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTTTATTTTT
* * * * *
13856031 CATGATTTTCGAAACTTTTTACGATTCGGGAATATTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
646 CACGATTTTTGAAACTTTTTACG-TTCGGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
13856096 CAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTC
710 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
13856161 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
775 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
* * *
13856226 TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTG
840 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
13856279 AGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAG
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
13856343 CGCACACCCCCCCAGCACCCTCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTCCG
66 CGCACACCCCCCGA-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
13856403 ACGATGCTTG
Statistics
Matches: 1713, Mismatches: 182, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
892 41 0.02
893 27 0.02
894 141 0.08
895 245 0.14
896 31 0.02
897 409 0.24
898 5 0.00
899 3 0.00
901 3 0.00
902 7 0.00
903 444 0.26
904 2 0.00
905 352 0.21
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCATGC
TCCGAGGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAAT
GAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCG
GGATGCGTAAGTGAGGATCGATCGGGTCCCTCTATGCGTGCTGCCGATCCTGCTGCCACAACCCT
CGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATACATA
CAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCATTTTTTATTTTTCACGA
TTTTTGAAACTTTTTACGTTCGGGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
Found at i:13858105 original size:26 final size:26
Alignment explanation
Indices: 13858076--13858128 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858066 CCGATCCGAT
* **
13858076 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
13858102 CTTAGACTGGGAAAAAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
13858128 C
1 C
13858129 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAAAACTCCGTATG
Found at i:13858687 original size:907 final size:907
Alignment explanation
Indices: 13856424--13865833 Score: 9615
Period size: 907 Copynumber: 10.3 Consensus size: 907
13856414 GCCCAGCATG
** *
13856424 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13856489 CCGA-TG-AT-A-CGAGCGGGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGT
66 CCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
13856550 GCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
131 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
13856615 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
196 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * * *
13856680 AGATGACTCGTTTTCTATTCTTCACGATTTTTGAAACTTTTTACCGTTTGGGGTTTTTTAAAATT
261 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
13856745 TTTTCGAAAGGAGTTTT-GCTCCCAAACTTGTTAGACGTGATCCTTGTATTTTGGTTGGCATGCA
326 TTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13856809 C-AAAAATTTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCC
390 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * * *
13856873 ATTGCAGACACTTGAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGAGGT
455 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** * *
13856938 GTGAGTTCTTAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCTA-CACCCATT
520 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATC
* * * *
13857002 GCACATCATGTGCACACA-CCCCCCGGCCCCCCCGATCTTCGGAACCGCAATGCCGTCGGTTAGG
584 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * ** * * *
13857066 TTCTCCGACAATGCACCAACGATGGCACCCCAACGAAGAAAAATGCGGCACCAGCACAT-GCCTA
649 TTCT-CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCC-G
* * * * * * *
13857130 AGCCTAGCATGTGCTA-CCGCATCCAAT-GGTTCGGTCCGATCGTAGACTGGCAATGAACTCCAT
712 AGCCCAGCATGTGC-AGCCGCAACC-CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
13857193 ATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTC
775 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
** * * * *** *
13857258 AGGTGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTTGGGTCCCCCTCTATGTGCTGCCGA
840 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGA
13857323 TCC
905 TCC
** * ** *
13857326 TGCTGTTGCAACCCTCGGTCCGAACCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13857391 CCGA-TGAAATGAGCGGGCGGGC-GGCGGGCGGGCGAGCACTACGCCAGCCAGAGAGACGGGATG
66 CCGACTG-AATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
13857454 CGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCCTACCAA
130 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
13857519 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTTATGGC
195 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
13857584 AAGCCGACTCCTTTTCTATGTTTCATGATATTCAAAACTTTTTACGGTACGAGATTTTTTAAAAT
260 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
13857649 TTTTTTGGAAGGATTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
325 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
13857714 CAAAAAAATTCAACTAAAAACTCAAAGTTTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCC
390 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
13857779 ATTTCAGACACTTTAATGGCTACGGGCAGCAAACCTGTAACATCTCAAACGCTCTTTAAGGGGGT
455 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13857844 GTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCG
520 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** *
13857909 CACATCATGTGTGCACACCCCTTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGT
585 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
** * * *
13857974 TCCTCGGGGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGGTCGAG
650 T-CTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCCGAG
* * * * * *
13858039 CCC-GCATATGCAGTCGCAACCCTTGATCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGC
714 CCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
** *
13858103 TTAGACTGGGAAAAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
779 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
13858168 AGCCAGTGGGGCGGGATGCGTAAGCCGAGGATCGACCGGGGCCCCCTTTATGTGCTGCCGATCC
844 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
13858232 TGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13858297 CTGACAGAATGAGCGGGCGGACGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGAGATGC
66 CCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
13858362 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
131 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
13858427 ACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCA
196 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** *
13858492 AGACGATTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGCTTCGGGATTTTTTAAAATT
261 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
13858557 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTATGTTGGCTTGCAC
326 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
13858622 AAAAAAATTCAGCTAAAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCA
391 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * * * *
13858687 TTTTAGACACTTTAATGGGTACTGGCAGCAAACCTGTAACATCTGAAATGCTCATTAAGGGGTTA
456 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * ** *
13858752 TGAGTTATAGAGGTTTGATGAGGGATAGAGGGACAATATAAGGGTGAAGTACCAGCACCCATCTC
521 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
13858817 ACATCATGTGCGTACACCCCCCCGGCCCCCCCGATCATCGGAACCCTAATACCGCCGGTCAGGTT
586 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * * *
13858882 CCCGGGGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACAT-GCCTAAGC
651 CTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCC-GAGC
* ** * * *
13858946 CCAGCATGTGCAGTCATAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCATATGCT
715 CCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
13859011 TAGACTGGCAAAGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCGCTCAGCCG
780 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* * * * * * * * * *
13859076 GCTAGAAGGGTGGGATGCGTAAGCCAAGGATTGACCGAGTACCCCTTTGCGTGCTGCCGATCC
845 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
13859139 TGTTGTCACAACCCTCGGT-TCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
13859203 ACCGA-TGAA--A-CGAGC--A--GGCAAGCGGGCGGGCACTACACCTGCCAGAGAGACGGGATG
65 ACCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
13859260 CGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTGAGGTACATCTTCATATTTCTGCATGCCAA
130 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
13859325 TGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGC
195 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
13859390 AAGACGACTAGTTTTCTATTTTTCACTATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAAT
260 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
13859455 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TAATTTTTGTTGGCATGC
325 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGC
* *
13859519 ACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCC
389 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
13859584 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGG
454 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
13859649 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
519 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
13859714 ACATATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGCCGAAACCCCAACGCCGCCAGTCAGG
584 GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * *
13859779 TTCTTCGACGATGCTCTGGCGATGGTGCCTCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCG
649 TTC-TCGACGATGCTCCGACGATGGTGCC-CCGATGAAGAAAAATGCGGCACCAGCACATGGCCG
* * * * *
13859843 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAC
712 AGCCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
13859908 GCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
777 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
13859973 CCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATC
842 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATC
13860038 C
907 C
* * * * * * *
13860039 TGCTGCCACAACCCCCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
13860104 CCGAC-GAAACGAGCGGGCAGG-CGGGCGGGC-GACGGGCACTACGTTGGCCAGAGAAACGGGAT
66 CCGACTG-AATGAGCGGGC-GGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
13860166 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCA
129 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * *
13860231 ATGCTATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTCCTTGG
194 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** *
13860296 CAAGACGACTCGTTTTCTATTTTTAATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAATA
259 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
13860361 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGG
324 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
13860426 A-AAAAAAATTCAGCTACAAACTTGAAGGGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
389 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13860490 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
454 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
13860555 TGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATC
519 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * **
13860620 GCACATCATGTGCGAACACCCCCACCCGG-CCCCCCGATCATCGGATCCCCAATGCCACCGGTCA
584 GCACATCATGTGCGCACA-CCCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* * * *
13860684 GG-T-T---C--T--T-CGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCG
647 GGTTCTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCCG
* * * ** *
13860739 AGCCCAGCATATGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
712 AGCCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
13860804 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTCAG
777 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
13860869 CTGGTCAGAGGGGCGGGATGCGCATGCC-AGGGATTGACCGGGTCCCCCTCTGCATCCTGCCGAT
842 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTACGTGCTGCCGAT
13860933 CC
906 CC
* * **
13860935 TGCTGCCGCAACCCCCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13861000 CCGAC-GAA--A-CGAGC-GA-GTGG-GGGCAGGCGGGCACTACGCCGGCCAGAGAGATGGGATG
66 CCGACTGAATGAGCGGGCGGACG-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* ***
13861058 CGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCGCCAA
130 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
13861123 TGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
195 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
13861188 AAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGCATTTTTTAAAAT
260 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
13861253 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCA
325 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13861318 CAAAACATTTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
390 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
13861383 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAA-GGGGT
455 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
13861447 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCG
520 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
13861512 CACATCATGTG-GCACA-CCCCCCGACCTCCCCGATCGTCGGAACTCCAATGCCGTCGGTCAGGT
585 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
** * * *
13861575 TCTCTTG-CGATGCTATGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGA
650 TCTC--GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCCGA
* * * * *
13861639 GCCCAGCATGTGCTGCTGCAACCCTCGGTCGGGGCTGATCTTAGACTGGGAATGAACTCCGTATG
713 GCCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
13861704 CTTAGATTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * * * * * * **
13861769 CGGATAGAAGGGCAGGATGCGCAAGCTGGGGATCGA-CGGGTCCCTCTATGCATGCTATCGATCC
843 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
13861833 TGCTGCCACAACCCTTGGTCCGGTCTGATCTAAGACTGGGAATGAACTCCGTATGCGAGCCGTTA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT----GCC-TAA
** * * * * * * * *** ** *** ** * *
13861898 GATAGGGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCAATTCGATC-TTA-GATTCGG-
61 GCCA--AC-CGA---CTGAATGAGCGGGCG-GACGGGC-GGGC-GGGCGGGCACTACG--CCGGC
* ** * * * ** * * * **
13861960 AATGA-ACTCCGTATGC-CTAAGCC-TACCGACGAAACGAGCGGGCGGGCACTACGTCGG-CCAG
115 CA-GAGAGACGGGATGCGC-AAGCCGT---G--G-ATCGATAGGG-TGG---TAGGTGGGTTTAG
* *** * * *** * * ** *
13862021 AGAGACGGGATGCACAAGCCATGGAT-CGATAGGGTGATAGGTGGGTTTA-GGCACATCTTCGT-
168 -G-CAC-ATCTTCATATTTC-TGCATGCCA-A---TGCCA--T--TTTTATGG-----CTT-GTA
* * * * * * *
13862083 ATTTC-TACGGGCCAAT-G-CCATTTTTATGGCTT---GTAAATTCATTCAATGGTCCCTTAAGC
215 AATTCATA-----CAATGGTCC---CTTAAGCCTTCACGTGAAGT--TTC-ATGG---C--AAGA
** * ***** * ** **
13862142 CTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTG
264 CGACTCGT----TTTCTAT-TTTTCACGA-T-TTTCA--A---AAC-T--TTTT----AC----G
* * * *
13862206 TTTTCGGGAGTTGTTAAAGTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
306 -GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
13862271 TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAC
370 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
13862336 CATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAACAAACCTATAAAATCT
435 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
13862401 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGG
500 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * * * * *
13862466 CCAACTACCAGCACCCATTGCACATCATGTGTGCACA-CCCCCTGGGCCCCCTGATCGTCAGATC
565 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAAC
* * **
13862530 CCCAATGCCG-CTAGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATG
630 CCCAATGCCGTC-GGTCAGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATG
* * * * * **
13862594 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA-TCGTAGCCCTCATTCCGGTCCGATCTTAG
693 CGGCACCAGCACATGGCCGAGCCCAGCATGTGC-AGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * *
13862658 ACTGGGAATGAACTCCATATGATTAGATTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGGA
757 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** * * * * * * * * *
13862723 ACGAGAATACGGGCACTCAGCTGACCAAAAGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTGC
822 ACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCC
* *
13862788 CCCTCTGCATGCTGCCGATCC
887 CCCTCTACGTGCTGCCGATCC
** * * * **
13862809 TGCTGCCATAACCCTCCGT-TCGCTCCGATCTTAGACTGGGAATGAACACCGTATGCCTAAAACA
1 TGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13862873 ATCGA-TGAATCGAGC--G-GG-CGGGCGGGCGGACGGGCACTACGCCGGCTAGAGAGATGGGAT
65 ACCGACTGAAT-GAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** * * * * * *
13862933 GCATAAGCCGTGGATTGATAGGGTGGTTGGTAGGTTT-GGCACATCTTCCTATTTCTACGTGCCA
129 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* *
13862997 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGG
194 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** * * * *
13863062 CAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCCGTTCGGGA-TTTTTAAAT
259 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * * *
13863126 TTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTTTTCGCATGC
324 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
13863191 ACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
389 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13863256 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGG
454 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
13863321 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATC
519 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *** * ***
13863386 GCACATGCTCAAGCCCAGCATGTGCTGCCACAACCCTCAATCCGGTCCGATCTTTGACTGGGAAT
584 GCACA---T---------CATGTGC-G-CAC-ACCC-C--CCCGG-CC--CCCCCGA-T-CGTCG
* * * * * * * ***
13863451 GAACTCCGTATGATTAGACTGGAAAT-GAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGT
626 GAAC-CC-CA--A-T-G-C-CG---TCG--GT-C--A-GGTT--CTCGA-CGATGCTCCGA-CG-
* * ** * *
13863515 ACGGGTGCTCAGCCAGCCA-GAAGGGCAGGATGCGTAAGCTGGGGATCAGCCGGGTCTCCCTCTG
669 A-TGGTGC-C--CC-G--ATGAA--GAAAAATGCG---GC-----ACCAG------------C-A
* * ** *
13863579 CATGATACCTGAGCCCAACATGTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAAT
704 CATG--GCC-GAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * *
13863644 GAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
766 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
13863709 CAGG-AGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCAAGGATCGGCTGGGTCCCCTTCTAC
831 CGGGCA-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTAC
13863773 GTGCTGCCGATCC
895 GTGCTGCCGATCC
* * * **
13863786 TGCTACTGCAACCCTCAGTCCT-GTCTAATCTTAGACTGGGAATGAA-TCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
13863849 ACCGA-TGAA--A-CAAGCGGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATG
65 ACCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
13863910 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
130 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
13863975 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGTCTTCACGTGAAGTTTCATGGC
195 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * **
13864040 AAGACGGCTTGTTTTTTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTCCTTAAAA-
260 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * * * *
13864104 TTTTGCGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTAGTTTTGTTAGCATGGA
325 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* ** * ***
13864169 CAAAAAATTTCAAATAAAAAGTGTCCATTTGAAGTTTTGTAGTTTTGTAGTTTTGTGACCATTTG
390 CAAAAAAATTCAGCTAAAAA-----C--TCGAAG---TGTA--CAAG-A-TTTTGTGACCATTTG
* * * *
13864234 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTCTAAAATCTTAAATG
441 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
13864299 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGTCAAGT
506 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
13864364 ACCAGCACCCATTGCACATCATGTGTGCACACCCCCCTCGGCCCTCCCGATCGCCGAAACCCCAA
571 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAA
* * * * *
13864429 -GCCGTCGGTAAGGTTCTCCCGACGATGCTCCAACGATGGTGCCCCGGTAAAGAAAAATGTGGCA
635 TGCCGTCGGTCAGGTTCT--CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCA
* * * * * *
13864493 CTAGCAAATGTCCGAGCCCAGCATGTACTGCCGTAA-CC-C--T-C-G---G---TT---C--GG
698 CCAGCACATGGCCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* *
13864541 --T----T-CG-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
763 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * **
13864597 GTGCGAGCACTCAGCCAGCCAGAAGGGCGGGATGTGCAAGCCGAGGATTGGTCGGGTCCCCCTCT
828 GTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCT
*
13864662 GCGTG-TGCCGATCC
893 ACGTGCTGCCGATCC
* * * * * *
13864676 TACTACCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGTATTCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13864741 CCGAC-GAAACGAGCGGGC--A--GGCGGGCGGGCGGGCACGACACCGGCCAGAGAGACAGGATG
66 CCGACTG-AATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
13864801 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAA
130 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
13864866 TGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
195 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
13864931 AAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAAT
260 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * **
13864996 TTTTT-TGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCATT-TAATTTTTGTTCACATGC
325 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGC
* *
13865059 ACAAAACAATTCAGCTAAAAACTC-AAGTGTACAAG-TTTTGTGACCATTTGAAAAAAGTGTCAC
389 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
13865122 CATTTCAGATACTTTAATGGCTACTGGGTAGCAAACCTGT-AAATCTCAAAATGCTCTTT-A-GG
454 CATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGG
*
13865184 GGTGTGAGTTCTCGAGGTTTGATGA-GGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
517 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
13865248 TCGCACATCATGTGCGCATACCCCCCTCAGCCCCCCCGATCGTCGGGACACCAATGCCG-CTGGT
582 TCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGT
* ** *
13865312 AAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGGCGAAGAAAAATGCTGCACCAGCACAT-
645 CAGGTTCT-CGACGATGCTCCGA-CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATG
* * * *
13865375 GCCTGAGCCCAGC-T-TGCACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATCAAC
708 GCC-GAGCCCAGCATGTGCA--GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
** * * * *
13865438 TCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTAACTCAACCCAGGAAACAAGCGTGCGAG
770 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * ** * * * *
13865503 CGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCGCTCTGCATGTT
835 CACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCT
*
13865568 ACCGATCC
900 GCCGATCC
*** * * * * *
13865576 TGCTATGGCAACCCTCGATTTGGTCCAATCTTAGACTTGGAATGAACTCCGTATTCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
13865641 CCGA-TGAA--A-----C-GA-------GCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGC
66 CCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
13865690 GCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
131 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * *
13865755 GCCTTTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTTAAGTTTCACGGCA
196 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
13865820 AGACGACTTGTTTT
261 AGACGACTCGTTTT
13865834 TTAATGGCTA
Statistics
Matches: 7138, Mismatches: 1041, Indels: 672
0.81 0.12 0.08
Matches are distributed among these distances:
871 2 0.00
872 4 0.00
873 143 0.02
874 44 0.01
875 58 0.01
876 22 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 4 0.00
882 1 0.00
883 3 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 4 0.00
888 203 0.03
889 3 0.00
890 61 0.01
891 756 0.11
892 130 0.02
893 3 0.00
894 3 0.00
895 9 0.00
896 280 0.04
897 4 0.00
898 75 0.01
899 802 0.11
900 345 0.05
901 264 0.04
902 75 0.01
903 9 0.00
904 9 0.00
905 274 0.04
906 690 0.10
907 1111 0.16
908 16 0.00
909 1 0.00
910 2 0.00
911 5 0.00
912 1 0.00
913 9 0.00
914 2 0.00
915 5 0.00
916 6 0.00
917 38 0.01
918 12 0.00
919 3 0.00
920 7 0.00
921 10 0.00
922 9 0.00
923 6 0.00
924 1 0.00
925 13 0.00
926 9 0.00
927 4 0.00
928 7 0.00
929 4 0.00
930 11 0.00
931 8 0.00
932 5 0.00
933 10 0.00
934 3 0.00
935 9 0.00
936 5 0.00
937 1 0.00
938 3 0.00
939 6 0.00
940 10 0.00
941 12 0.00
942 9 0.00
943 12 0.00
944 9 0.00
945 14 0.00
946 8 0.00
947 8 0.00
948 8 0.00
949 4 0.00
950 17 0.00
951 9 0.00
952 6 0.00
953 11 0.00
954 13 0.00
955 2 0.00
956 6 0.00
957 2 0.00
958 10 0.00
959 16 0.00
960 5 0.00
961 6 0.00
962 3 0.00
964 7 0.00
965 4 0.00
967 1 0.00
968 7 0.00
969 4 0.00
970 1 0.00
971 6 0.00
972 5 0.00
973 196 0.03
974 87 0.01
975 234 0.03
976 166 0.02
977 406 0.06
978 7 0.00
979 7 0.00
982 1 0.00
984 5 0.00
987 4 0.00
988 1 0.00
989 1 0.00
990 1 0.00
991 158 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (907 bp):
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACTGAATGAGCGGGCGGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
CTCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGGCCGAGCC
CAGCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:13859026 original size:26 final size:26
Alignment explanation
Indices: 13858983--13859035 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858973 CCGGTCTGAT
*
13858983 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTTGGAAAGAACTCCATATG
*
13859009 CTTAGAC-TGGCAAAGAACTCCGTATG
1 CTTAGACTTGG-AAAGAACTCCATATG
13859035 C
1 C
13859036 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTTGGAAAGAACTCCATATG
Found at i:13860815 original size:26 final size:26
Alignment explanation
Indices: 13860779--13860831 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13860769 TTGGTCTGAT
13860779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13860805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13860831 C
1 C
13860832 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13861729 original size:26 final size:26
Alignment explanation
Indices: 13861678--13861730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13861668 CGGGGCTGAT
*
13861678 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13861704 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
13861730 C
1 C
13861731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13862690 original size:26 final size:26
Alignment explanation
Indices: 13862654--13862704 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13862644 CGGTCCGATC
13862654 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
* *
13862680 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
13862705 CTTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:13865471 original size:26 final size:26
Alignment explanation
Indices: 13865420--13865472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13865410 CTGGTCTGAT
*
13865420 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
13865446 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATCAACTCCATATG
13865472 C
1 C
13865473 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:13867011 original size:26 final size:26
Alignment explanation
Indices: 13866982--13867034 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13866972 CCGGTCCGAT
13866982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13867008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13867034 C
1 C
13867035 GTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13867906 original size:26 final size:26
Alignment explanation
Indices: 13867870--13867922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13867860 CCAGTCCGAT
13867870 CTTAGACTGGGAATGAAATCTATATG
1 CTTAGACTGGGAATGAAATCTATATG
* *
13867896 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCTATATG
13867922 C
1 C
13867923 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTATATG
Found at i:13869679 original size:26 final size:26
Alignment explanation
Indices: 13869643--13869695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13869633 CTGGCCCGAT
13869643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13869669 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13869695 C
1 C
13869696 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13870568 original size:26 final size:26
Alignment explanation
Indices: 13870532--13870584 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13870522 CTGGTCTGAT
13870532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13870558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13870584 C
1 C
13870585 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13871446 original size:26 final size:26
Alignment explanation
Indices: 13871417--13871469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13871407 CCGATCCGAT
* *
13871417 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13871443 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13871469 C
1 C
13871470 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13872350 original size:26 final size:26
Alignment explanation
Indices: 13872321--13872373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13872311 CTGGTCTGAT
* *
13872321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13872347 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13872373 C
1 C
13872374 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13872881 original size:896 final size:894
Alignment explanation
Indices: 13866119--13873702 Score: 9425
Period size: 889 Copynumber: 8.5 Consensus size: 894
13866109 CCGGTCTGAT
* * * * *
13866119 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTACGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
13866184 TGGCCAGAGGGGTGGGATGCGCAAGTC-GAGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAG-CAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATC
* * *
13866248 CTGCTGCTGCAACCCTC-GACCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
13866312 ACCGATGAAACGAGCGGGCGGGTGGGCGGGCGGGCGGGCAGGCGGTCACTACGCCGACCAGAGAG
195 ACCGACGAAACGA----GC----GGGCGGGC---AGGGC--G-GG-CACTACGCCGGCCAGAGAG
* * * * *
13866377 ATGGGATGCACAAGCCGTGCATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
245 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
13866442 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCGTTCACGTGAAGT
310 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * *
13866507 TTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTT
375 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTT
* * ** * **
13866572 TTTAAAATTTTTTCGAAAGGACTTTTCACCCCAAACTTTGTAGACGTGATCCACGTATTTTTGTT
440 TTTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
13866637 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCGTTTGAAAAAA
505 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
13866702 GTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT
570 ATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
13866767 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGC
635 AAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
13866832 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCACCTGATCACCGGAACCCGAATGTC-GTC
700 ACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACCCCAATGCCGGTC
*
13866896 -GG---TCAGG-T--T----C-----T---CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
764 AGGTTCTCAGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
13866942 AGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
829 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
13867007 G
894 G
* *
13867008 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13867073 CGACCAGAGGGGCGAGATACGCAAGCTA-GGGATTGACCGAGTCCCTCTCTACGTGCTACCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGC-AGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATC
* * *
13867137 CTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13867202 ACCGACAAAACGAACGGGCGGGCA-GGCGGGCACTACGCCGGCCAGAGAGACGAGATGTGCAAGC
195 ACCGACGAAACGAGCGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
13867266 CATGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATTCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
13867331 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** ** **
13867396 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
13867461 AAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTGTT-TTGACGTGCA-AAACA
455 AAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAA-A
* * * *
13867524 AAATTTC-GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCTATTT
518 AAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
* * * * *
13867588 TAGACACTTTAATGACTACTGGCAGCAAACCTATAAAATCTTAAATGTTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGA
* * * * * *
13867653 GTTCTCAAGGTTTGATAAGGGATAGGGCGCGAATATAAGAGCCAACTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** * *
13867718 TCATGTGTGAATACCCCTTGGCCCCCCCGATCGTCGGAACCCCAAGGCC-GTC-GG-T-T-AGG-
712 TCATGTGCGCACACCCC-CCGCCCCCCCGATCGCCGGAACCCCAATGCCGGTCAGGTTCTCAGGA
* * * * * * *
13867777 TTCTCCGATGTTGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACCTGCACGAGCCCAGCATGT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * **
13867842 GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAATCTATATG
841 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13867896 CTTAGACTGGGAATGAACTCTGTATGCCTAATTCAACCCACGAAATGAGCGTGCGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13867960 CGTGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGAATCCCCCTCTGCGTGCTGCCGATC
66 CG-GCCAGAGGGGCGAGATGCGCAAGCAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATC
* * **
13868025 TTGCTGCCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13868090 ACCGATGAAACGAGCGAATGGGCGGGCGAACGGGCGGTCACTGCGTCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGAGC----GGGCGGGC--A-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * **
13868155 CGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGGGTGCCAA
253 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
13868220 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
318 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * *
13868285 AAGATGACTCGTTTT-TATTTTTCACGATTTTTGAAACTTTTTACGATTCGGGATTTTTCAAAAT
383 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * ** *
13868349 TTTTTC-AGAAGGAGTTTTGGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTTCCTTGC
448 TTTTTCGA-AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
13868413 ACAAAAAAATTCAGCTGAAAACTCAAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAATGTCCC
512 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCC
* *
13868478 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
577 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCG
* ** *
13868543 TGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGAAAATATAAGGGCCAAGTACTAGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
13868608 GCACATCGTTTGTGCACACCCCGTCGGCCCGCCCGATCACCGGAACCCTAATGCCGTCGGTCAGG
707 GCACATCATGTGCGCACACCCC--CCGCCCCCCCGATCGCCGGAACCCCAATG-C--CGGTCAGG
* ** * *
13868673 TTCTCCGGAGATGCTTAGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGA
767 TTCT-CAG-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
13868738 GCCCAGCATGTGCTGCCGCAA----C--T-C--T-CGATC-----C--GG--T---CT--G-AT-
830 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
13868777 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATACAGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * *
13868842 CGGCCAGCGGGGCAAGATGCGTAAG-TTGGGATCGGCCGGGTCCCCCTTTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
13868906 TACTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCTAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13868971 CTGACGAAACGA----GCGGGC-GGGCGGGCACTACGCCGGCCAGAGATACGGGATGCGCAAGCC
196 CCGACGAAACGAGCGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
13869031 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
13869096 GTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAACATGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
13869161 TCGTTTTCTATTTTTCACGATTTTC-AAACATTTTTGCGGTTCGGGATTTTTTAAAATTCTTTT-
391 TCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTTACGGTTCGGGATTTTTTAAAATT-TTTTC
* * * * * *
13869224 GGAAGGATTTTTGACCCCAAACTT-CTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA
454 GAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
13869288 AATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
* * **
13869353 GACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTGAAGGTTGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGT
* *
13869418 TTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
13869483 ATGTGCACACACCCCCCGGCCCCCCC-ATCGTCGGAACGCCAATACCGCCGGTTAGGTTCTCCGG
714 ATGTGCGCACACCCCCC-GCCCCCCCGATCGCCGGAACCCCAAT---GCCGGTCAGGTTCT-C-A
* * * *
13869547 GGATGTTCC-AGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGC
773 GGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
13869611 GTGTGCTGCCGTAACCCTCGGTCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATG
837 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
13869669 CTTAGGCTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGTGTGCATGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * * *
13869734 CGACCAGAGGGATGGGATGCATAAGCCGGGGATCGGA-CGGGTCCCCCTCTGCGTGCTACCAATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCAGGGGATC-GACCGAGTCCCCCTCTGCGTGCTACCGATC
* ** * *
13869798 TTGCTGCCATAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13869863 ACCGATGAAAAGAGCAGGCGGGC-GGGCGGGCACTACGGCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
**
13869927 CGTGGATCGATAGGGTGGTAGGTGGGTTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
260 CGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
13869992 ATTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
13870057 ACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
13870122 GGAAAGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTATAAAAA
454 GAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
13870187 AATTCAGCTAACAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAATGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCA
* * *
13870252 GACACTTTAATGCCTACTGGCAGTAAACCTATAAAATCTCAAATGCACTTTAAGGGCGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGT
* * *
13870317 TCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
13870382 ATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCC-GTCA-G---TCAGG-TT
714 ATGTGCGCACACCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGGTCAGGTTCTCAGGATG
* * * * *
13870441 CTTCGGCGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
778 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * *
13870506 TATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
843 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
13870558 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
13870623 CGGCCAGAGGGGCGGGATACGTAAG-ACGAGGATCGACCGGGTCCCCCTCTGCGTGTTACAGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCA-GGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATC
* * * * *
13870687 CTGCTACCACAACCCTCGGTTCGGTATGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
13870752 ACCGACGAAATGAACGGGCGGACGGATGGGCGGGCGCTACGCTGGCTAGAGAGACGAGATGCGCA
195 ACCGACGAAACGAGCGGGCGG--GCA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
13870817 AGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
13870882 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
13870947 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
13871012 TCGAAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13871077 ACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
* * * * *
13871142 CGGACACTTTGATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCGCTTTAAGGGTGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGA
*
13871206 GTTCTTGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
13871270 TAATGTGCGCACACCCCTCGGCCCCCCCGATCGTC-GAACCCCAATGCC-G-CCGG---TCAGG-
712 TCATGTGCGCACACCCC-CCGCCCCCCCGATCGCCGGAACCCCAATGCCGGTCAGGTTCTCAGGA
* * * * * * *
13871328 TTCTCCAACGA---TGCTCTGACGAAGAAAAATGCGGCACCAGTACATGCCCGAGCCAAACATGT
776 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
13871390 GCGGCCGC-ATCTTCGGTCCGATCCGATCTTAGACTGGGGATGAACTCCGTATG
841 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13871443 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
13871508 CGGCCAGAGGGG-TAGGATACGCCAATC-GAGGATCGACCGGGTCCCCCTCTATGTTCTGCCGAT
66 CGGCCAGAGGGGCGA-GATGCG-CAAGCAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGAT
* ** * * *
13871571 CTTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
13871636 GACCGACGAAACAAGCGAGCGGCCGGGTGGGC-GGGCGGGCACTACGTCGGCCAGAGAGACGGGA
194 AACCGACG--A-AA-CGA---G-CGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * * * *
13871700 TGCGCAAGCCGTGAATTGATACGGTGGTAGGTCGGTTTAGGCACATCTTCAAAGTTCTGCAAGCC
251 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * *
13871765 AATGCCATTTGTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATG
316 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * * *
13871830 GAAAGATGATTCGTTTTTTATTTTTCACGATTTTCAAAACATTTTGCGGTTCGGGATTTTTTAAA
381 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAA
*
13871895 ATTTTTTCGAAAA-CGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
446 ATTTTTTCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
13871959 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTGC
511 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
* *
13872024 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGA
576 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGC
13872088 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
641 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
13872153 CACACATCATGTGAGCACACCCCCCGCCCCCCCGATCGCCGAAACCCCAATTTCACTGGTCAGGT
706 CGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAA-TGC-C-GGTCAGGT
* * *
13872218 TCTCTGGCAATGCTCCGACGATGGTGCCCCCG-CGAAGAAAAATGGGGCACCAGCACATGCCCAA
768 TCTCAGG--ATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
13872282 GCCCAGTATGTGCTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
830 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
13872347 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGC-ATCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
13872411 TGGCTAGA-GGGCGAGATGCGCAAGCAGGGGATCGGCCGAGTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCGAGATGCGCAAGCAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
* ** *
13872475 TGCTGCCGTAACCCTCTATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13872540 CCAATGAAACGAGCGGGTGGGCAGGCGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
196 CCGACGAAACGAGCGGGCGGGCAGG-G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
13872605 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
13872670 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TCACGTTAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* **
13872734 ACTCGTTTTTTATTTTTCACGATTTTC-AAAC-TTTTACGGGTTTCAAGATTTTTTAAAATTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC-GG-TTCGGGATTTTTTAAAATTTTT
* * *
13872797 TCGAAAAGAG-TTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTATAAA
452 TCGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
13872861 AACATTCAGGTAACAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAATGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
* * *
13872926 TAGACACTTTAAT-GCTACTGGCAGTAAACCTATAAAATCTCAAATGCACTTTAAGGGCGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGA
* * * *
13872990 GTTCTCAAGGTTTGATGA-GGATATGGGGCCAATATAA-GGCCCAGTACTAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13873053 TCATGTGCGCACCACCCCCCGACCCCCCCGATCACCGGAACCCTAATGCC-GCCA-G---TCAGG
712 TCATGTGCGCA-CACCCCCCG-CCCCCCCGATCGCCGGAACCCCAATGCCGGTCAGGTTCTCAGG
* * * * * * *
13873113 -TTCGCCGGCGATGGTGCCCTGGCGTAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
775 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
13873177 GGCTG-TGACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 TGCTGCCG-CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
13873232 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCGCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
13873297 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC-AGGTTCCCCTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCGAGATGCGCAAGCAGGGGATCGACCGA-GTCCCCCTCTGCGTGCTACCGATC
* * *
13873361 CTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
13873426 ACCGACGAAACGAGCGAGCGAG-AGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAACGAGCGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
13873490 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* ** * * *
13873555 TTTATGGCCTGTAAATTCGCACAGTGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAGGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
13873620 CTCGTTTTCTATTTTTCAC-ATTTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC
390 CTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
13873684 AGAAAA-TGTTTTGGCCCCA
454 -GAAAAGAGTTTTGGCCCCA
13873703 CCCGTCTGCC
Statistics
Matches: 5833, Mismatches: 704, Indels: 319
0.85 0.10 0.05
Matches are distributed among these distances:
866 95 0.02
867 9 0.00
868 397 0.07
869 61 0.01
870 5 0.00
872 7 0.00
873 3 0.00
874 471 0.08
875 8 0.00
876 7 0.00
878 3 0.00
880 98 0.02
881 76 0.01
882 12 0.00
883 2 0.00
884 139 0.02
885 437 0.07
886 88 0.02
887 130 0.02
888 473 0.08
889 731 0.13
890 123 0.02
891 70 0.01
892 386 0.07
893 166 0.03
894 59 0.01
895 359 0.06
896 435 0.07
897 218 0.04
898 170 0.03
899 244 0.04
900 28 0.00
901 7 0.00
902 99 0.02
903 57 0.01
904 93 0.02
905 1 0.00
906 1 0.00
907 65 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCAGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGGTCAGGTTCTCAGGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:13873242 original size:26 final size:26
Alignment explanation
Indices: 13873206--13873258 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13873196 CCAGTCTGAT
13873206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13873232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13873258 C
1 C
13873259 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13874779 original size:26 final size:26
Alignment explanation
Indices: 13874750--13874799 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13874740 GTTGACTTAG
*
13874750 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13874776 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13874800 GAGATCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13875694 original size:26 final size:26
Alignment explanation
Indices: 13875658--13875710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13875648 GTTGACTTAG
**
13875658 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13875684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13875710 G
1 G
13875711 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13877510 original size:26 final size:26
Alignment explanation
Indices: 13877460--13877512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13877450 TTTGACTTAT
* **
13877460 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13877486 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13877512 G
1 G
13877513 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13877650 original size:904 final size:899
Alignment explanation
Indices: 13873989--13884447 Score: 12876
Period size: 904 Copynumber: 11.7 Consensus size: 899
13873979 TCGCATTTTT
* ** * *
13873989 CATCATCGGAGAACCTGACCGATAGCATTGGGGTTCC-AGTGATAGAGGGGGCCGGAGGGGTGTG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCG-GGGGGCCGG-GGGGTGTG
* *
13874053 CGCACATGATGGGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAC
63 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
13874118 CTCGAGAACCCACACCCCTTTAAAGAGCATTTGAGATTTTACAGCTTTGCTACCAGTAGCCATTA
128 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
13874183 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAG
193 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
13874248 CTGAATTCTTTTGTGCATGCCACAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
258 CTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
13874313 CACCTTCCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGA
322 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-CAAAATCATGAAAAATAGA
* * *
13874378 AAACGAGTCATCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
13874443 CCATAAAAATGGCATTAGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
451 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
13874508 ATCCACGGCTTGCGGATCTCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCTGCCCGCCCACTCG
516 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCG
* * * *
13874573 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGATCAGACCAAATCGAGGGTT
580 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * *
13874638 GCGGCAATAGGATCGGCAGCATGCAAAAGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCC
645 GCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * **
13874703 CTCTGGCCGGCTGAGCGCCCGCACGGTTGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCC
710 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
13874768 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCAGATCATACCGAGGGTTGCTGCAGCAC
775 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC
* * * *
13874833 ATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGT-CGGGGCAACATTGCCGGAG
840 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCG-CGGAG
* * ** *
13874894 CATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCTGGTGATCGGGGGGTCGGGGGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * *
13874959 ACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
13875024 -ATGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAA
131 GA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
13875088 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGC
*
13875152 TGAATTTTTTTGTGCATGCCAACAAAAATGCAA-GATCACGTCTACCAAGTTTGGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
13875216 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCATGAAAAATAGAAA
* * *
13875281 ACGAGTCATCTT-CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
13875345 ATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
13875410 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCACCCGCC
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-----CCG----CCCGCC
* * * ** * * **
13875475 CGCTCGTTCCGTCGGTTGGCTTAGGCATACGCAGTTCATTTCCAGTCTAAGATTGGATCGGACTA
574 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * *
13875540 AGGGTTTAC-GTAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTGGATCCCCGGCTTACGCAT
639 AGGG-TTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
* * ** *
13875604 CCCGCCCCTCTAGCTGGCTGAATGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGT
703 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** * *
13875669 TCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTG
768 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * *
13875734 ACCGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGGCACCATCGTC
833 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCG-C
13875798 GGAG
896 GGAG
* ** *
13875802 CATCGTCAGG-GAACCTGACCGGCGGCATTGAAGTTCCGACGATCGAGGGGCCGGGGGGTGTGCG
1 CATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
*
13875866 CAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
13875931 CGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
13875996 GTGTCTGGAATGGGGCCACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * ** **
13876061 AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCATGTTTGGGGGTAAAACGG
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
13876126 CTTCCGAAAAAA-TTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAA
*
13876190 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* ** *
13876255 TAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
13876320 CACGGCTTGCGCATCTCATCTCTCTGGCCGGCGTGGTGCCCG--C-CCGCCCGCCCTGCTCATTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCC-GCTCGTTT
* * * *
13876382 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCAAGGGTTAC
583 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC
* * * * * * *
13876446 GGCAGTAGGATCGGCAGCATGCAGAGCGGGACCCGGCCGATCTCTGGCTTGTGCATCTCGCCCCT
647 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
** * * *
13876511 CTGGCCGATTGAGCACCCGCACACTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCA
712 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * *
13876576 GTCTAAGCGTACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTACGACAGCACAT
777 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* * * * *
13876641 GCTAGGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCTGGAG
842 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGC-GGAG
* ** * *
13876700 CATCGTCGGAGAACCTGATCGGTGGCAATGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGAGCG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCG
* * *
13876765 CACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
13876830 CGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
13876895 GTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
13876960 GAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
13877025 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAATATCATGAAAAATAAAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA-ATCATGAAAAATAGAAAA
* * *
13877090 CGAGTCGTCTTACCATAAAACTTCACGTGAAAGGCTTAAGGGACCATCGTATGAATTTACAAGCC
389 CGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * * * **
13877155 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAATCCTACCTATGACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
13877220 CCACGGCGTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTT
* * *
13877285 TCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAC
582 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * **
13877350 GACAGTAGGATCGGTAGCACGTAGAGGGGGACCCAGCCGATCCTTGGCTTGCGCATCCCGCCCCT
647 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * * * * * *
13877415 TTGGCCGGTTGAGCACCCGCACACTTGTCTCGTGGTTTGACTTATGCATATGGAGTTCATTCCCT
712 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
13877480 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACAT
777 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* *
13877545 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCACAGGAG
842 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGC-GGAG
* * * * * *
13877604 CATCATTGGAGAACCTGACCGACGACTTTGAGGTTCCGGA-GATCGGGGGGGCCCGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGC
* * * *
13877668 GCACATGAAGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
13877733 TCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
13877798 AGTATTTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
13877863 TGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
13877928 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAATATCATGAAAAATAAAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA-ATCATGAAAAATAGAAA
* *
13877993 ACGAGTCGTCTTACCATGAAACTTCACGTGAAAGGCTTAAGGGACCATCGTATGAATTTACAAGC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * **
13878058 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAATCCCACCAATGACCCTATCGA
452 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
13878123 TCCACGGCGTGCGCATCCCATCTATTTGGACAGCGTAGTGCCCGCCCGTCCGCCCTCCCTTCCGC
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCG-CC-CGC--CCGC
* * * ** *
13878188 TCG-TTCGTCAGTTGGCGTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGG
577 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
** * * * * * * * *
13878252 GTTGCGATAGTAGGATCGGCTGCATGCAGAGGGGGACCAGATCGATCCTCGGCTTACGCACCCCA
642 GTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
* * * * *
13878317 CCCCTCTGGTCGGCTGAGCACACGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
707 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
13878382 TCCCAG--T---C-TA--G-G---------A-TC----A---GACCGGACCGAGGGTTGTGACAG
772 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* ** * * *
13878421 CACATGCTTGGCTCAAGCATGTGTTGGTGTCGCATTTTTCTTCGT-CGGTGCACCATCGCTGGAG
837 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCGC-GGAG
*
13878485 CATCGTCGGAGAACCTGACC-A-GTGACAAT-GGGTTCCGACGATCTGGGGGGCCGGGGGGTGTG
1 CATCGTCGGAGAACCTGACCGACG-G-CATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTG
* *
13878547 CGCAGATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
63 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
13878612 CTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TGAGCCATT
128 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATT
*
13878676 AAAGTGTCTGAAATGGGGACACTTTTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
192 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
**
13878741 AATGAATTTTTTTGTGCATGCCAAC----A-A-AA--AT-A-----A--AA----GGGGCCAAAA
257 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
13878786 CTCCTTTCAAAAAAATTTAAAAAAATCCCAAACCGAAAAAAGCTTCAAAAATCATGAAAAATAGA
322 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGA
*
13878851 AAACGAGTCGTCTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
13878916 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
451 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
13878981 ATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGCATAGT-----------GCCCGCCCGCTCGT
516 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGT
* * * * *
13879035 TTCGTCGGTTGGCTTAGGTATACGAAGTTCATTCCCTGTCTAAGATTAGACCGGACCGAGGGTTG
581 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T-
* *
13879100 TGTCAGTAGGACTGGACTGATGGTTACGGTCGCAGGATCGATAGCACGCAGA-AGGGACCCGGTC
644 TG-C----GG-C---AGT-A-GG--A---T--C-GG--C---AGCACGCAGAGGGGGACCCGGTC
* * *
13879164 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTT
685 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
13879229 GACTTAGGCATAC---G----------G----AG--T------TT-ATTCCCAGTGTAAGATCGG
750 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
13879268 ACCGGACCGAGGGTTGCAGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
815 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
*
13879333 ACCGGGGCACCATCGTCGGAG
880 TCCGGGGCACCATCG-CGGAG
** * ** * ** *
13879354 CATCGTCGGAGAACCTGACCGGTGGCATTGGGTTTTTGGCGATCGAGGGGG-CGACGGGTGTGCA
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCG
* * *
13879418 CACATGATGTGCGATGGATGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
13879483 CGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
13879548 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGTT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
13879613 GAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
13879678 CTTTCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCATGAAAAATACAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCATGAAAAATAGAAAA
*
13879743 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
13879808 TAAATATGGCATTGGCATGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
13879873 CACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGT----G--C-CCGCTCGTCAGCTCGTTTC
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTC
* * *
13879931 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGG
584 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * *
13879996 CAGCAGGATCAGCAGCACACAGAGGGGGACCCGATCGATACCCGGCTTGCGCATCCCGCCCCTCT
649 CAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
13880061 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
714 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
13880126 CTAAGCATACGGAGTTCATTTCCAATCTAAGATTGGACCAGACCGAAGGTTACGGTAGCACAAGC
779 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* * * *
13880191 TAGGCTCAGGCATTTGCTGGTGCTGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAG
844 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCG-CGGAG
* * *
13880248 CATCGCCAGAGAACCTGACC-AGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
1 CATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTG
* * * *
13880312 CGCACATGAGGTGCAATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAAG
63 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
13880377 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
128 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
13880442 GAGTGTCTGAAATGCGGACAC-ATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
193 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *** * *
13880506 CTGAATTTTTTTGGGCATATAAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAAC
258 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
13880571 TCCTTTCGAAAGAATTTTAAAAAAGTTCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGA
323 TCCTTCCGAAAAAATTTTAAAAAA-TCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGA
*
13880636 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAG
386 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
13880701 CAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACTTACCACCCTATCG
451 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * ** * * *
13880766 ATCCGCGGCTTGCACATCCCATCTCTCTGGCCGGCACAGTG-CC-CAC-CCGCCCGTCCGCTCAT
516 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGT
* * * * * ** * *
13880828 TTCGTAGGTTAGCTTAGGCATACGAAGTTCATTCTCGGTCTAAGATTGGGCCGGACCGAGGGTTG
581 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * * * *
13880893 CAGCAGCAGGATCGGCAGTACACAGAGGGGGACCCAGTCGATCCCCGACTTGCACATCTCACCCC
646 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * *
13880958 TCTGGCCGGTTGAGCGCCTGCACGCTTGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCC
711 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
13881023 AGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGTTGCGACAGCACA
776 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * * *
13881088 TGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGT-CAGGGCACCATCATCAGAG
841 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATC-GCGGAG
* * * * *
13881148 CATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATTAGGGGGTCGGGGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCG
* * * *
13881213 CACATGATGTGCGATGGGTTCTGGTGCTTGGCCATTATATTGGCACCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
13881278 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
**
13881343 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTATAAAGTTTTTAGC
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGC
*
13881408 TGAATTTTTTTGTGCATGCCAGA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
259 TGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
13881472 TCCTTCCAAAAAAATTTTAAAAAAACTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAA
323 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAA
** * * *
13881537 ATTGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGC
387 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
13881602 CATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTACCGA
452 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * * * *
13881667 TCTACGGCTTGCTTATCCCGCCTTTCTGGCTGACTTAGTGCCCG--C-CCGCCCGCCCGCTCGTT
517 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTT
* * * * ** * *
13881729 TCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAAATC-GGTCTGAACTGAGGGTTG
582 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTG
* * * * * *
13881793 CGGTAGCAGGATCGACAGTACGCAGAGGGGGA------C--T---CGGCTTGAGCATTCC-CCCC
646 CGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * * *
13881846 TCCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
711 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
13881911 AG--T---C-T---GAG---------A-TC--AGAT-----CAGGCTGAGGGTTGTGGCAGCACA
776 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * * *
13881950 TTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGACACCATCGTCGGAG
841 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCG-CGGAG
** * * ** ***
13882010 CATCACCGGAGAACTTGACC-AGCGGCATTAGGGTTCCGGTGATCGGAGGGATGGGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGC
*
13882074 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
13882139 TCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
13882204 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
13882269 TGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
13882334 CCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTCAACAATCATGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA-AATCATGAAAAATAGAAA
* * * ** *
13882398 ATGAGTCATCTTGCCATGAAACTTCACATGAAGGCAAAAAGGACCATTGTATGAATTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
13882463 ATAAAAATGGCATTGGCATGCAAAAATATGAAGACGTGCCTAAACCCACCTTCCACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
13882528 CCACGGCTTGCGCATCCTGCCTCGCTGGCCGACATAGTGCCTGCCCACCCGCCCGCCCGCTCGTT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTT
* * * * * * *
13882593 TCTTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGGTCAGACCGGATCAAGGGTT--
582 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* *
13882656 ---A-T-GG-T----AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCT
647 GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
13882711 CTGGCCGGCTGAGCGTCCACACGCTCGTTTCGTAGGTTGACTTAGGAATACAGAGTTCATTCCCA
712 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
13882776 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTACGGTAGCACAT
777 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* * * * *
13882841 GCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGCCAGAG
842 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCG-CGGAG
* * ** * *
13882900 CATCATCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGAT-TGGGGGCCGGGCGGTGTGCGC
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
*
13882964 ACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
13883029 AAGAACCCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
13883094 TGTCTGAAA-GTGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
196 TGTCTGAAATG-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
13883158 TAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAATTTTGGGGCCAAAACTG
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
13883223 CTT-CGAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAACATTATGAAAAATAGAAA
325 CTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA-ATCATGAAAAATAGAAA
* * *
13883287 ATGAGTCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
13883352 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGAT
453 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
13883417 CCACGGCTTGCGCATCCCATCTCTCTGGCCGACGT-GTGCCCACCCGCCCGCCCGCCCGCCCGCT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCG-CCGCCCGCCCGCT
* *
13883481 AGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
578 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * *
13883546 TTGTGGCGGCAGGATCGACAGCAC-CTAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCA
643 TTGCGGCAGTAGGATCGGCAGCACGC-AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
* * * * *
13883610 CCCCTCTGGCTGACTGAGCGCCTGCAGGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCAT
707 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
13883675 TCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGTAG
772 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* ** *
13883740 CACATGCTGGGCTCAGGCATGTGCTGGTATCGCATTTTTCTTCTCCGGGCCACCATCGCCGGAG
837 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCG-CGGAG
* ** * * * ** *
13883804 CGTCACCGGAGAACCTGACCGACGGCACTAGGGTTCTG-CTGATTAGGGGGCCGAGGGGTGTGCG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGCCGGGGGGTGTGCG
* * * * *
13883868 CATATGATTTGCGATGGGTACTGGTACTTGGCACTTATATTGG-CCCCTATCCCTCATCAACCCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
13883932 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCAAGTAGCCAATAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
13883997 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACAGTTCGAGTTTATAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
13884062 GAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
13884127 CTTCCGAAAAAATTTTAAAAAATCCCGAAGCGTAAAAAGTTTCAAAATTCGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCATGAAAAATAGAAAA
*
13884192 CGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
13884257 TAGAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCTTATCGATC
454 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
13884322 CACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----G--C-CTGCCCGCCCGCTCGTTTC
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTC
* * * * * ** * *
13884380 ATCAGTTGGCTTAGGCATGCAGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCGG
584 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
13884445 CAG
649 CAG
13884448 CACATGCTGG
Statistics
Matches: 8329, Mismatches: 975, Indels: 512
0.85 0.10 0.05
Matches are distributed among these distances:
843 7 0.00
844 53 0.01
845 3 0.00
846 4 0.00
847 2 0.00
851 1 0.00
852 14 0.00
855 2 0.00
856 4 0.00
857 4 0.00
858 1 0.00
859 125 0.02
860 269 0.03
861 112 0.01
862 294 0.04
863 12 0.00
864 128 0.02
865 5 0.00
866 4 0.00
867 14 0.00
868 84 0.01
869 390 0.05
870 29 0.00
871 3 0.00
872 3 0.00
873 5 0.00
874 3 0.00
875 4 0.00
876 1 0.00
877 2 0.00
878 2 0.00
879 7 0.00
880 229 0.03
881 96 0.01
882 4 0.00
883 4 0.00
884 1 0.00
885 8 0.00
886 3 0.00
887 3 0.00
888 355 0.04
889 408 0.05
890 109 0.01
891 2 0.00
892 79 0.01
893 142 0.02
894 127 0.02
895 126 0.02
896 332 0.04
897 16 0.00
898 314 0.04
899 422 0.05
900 857 0.10
901 324 0.04
902 17 0.00
903 210 0.03
904 1460 0.18
905 123 0.01
906 2 0.00
907 167 0.02
908 604 0.07
909 194 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
GTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGCGGAG
Found at i:13880140 original size:26 final size:26
Alignment explanation
Indices: 13880104--13880156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13880094 GTTGACTTAG
*
13880104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
13880130 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13880156 G
1 G
13880157 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13883699 original size:26 final size:26
Alignment explanation
Indices: 13883660--13883710 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13883650 GTTGACTTAC
*
13883660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
13883686 GCATACGGAATTCATTCCCAGTCTA
1 GCATACGGAATTCATTCCCAGTCTA
13883711 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:13886194 original size:26 final size:26
Alignment explanation
Indices: 13886155--13886207 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13886145 GTTGACTTAG
*
13886155 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13886181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13886207 G
1 G
13886208 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13886330 original size:898 final size:889
Alignment explanation
Indices: 13884401--13887079 Score: 3479
Period size: 899 Copynumber: 3.0 Consensus size: 889
13884391 TAGGCATGCA
* * *
13884401 GAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
13884466 ATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCA---TC---G---C-CGGAGAACCTGATC
66 ATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGA-C
* ** *
13884521 GGCGGCATTGGGGTTCCG-GCGATCGGGGGGCTGAGGGGGGGTGTGCGCACATGATGTGCGATGG
130 CGATGCATTGGGGTTCCGCG-GATCGGGGGG-TCA--GGGGGTGTGCGCACATGATGTGCGATGG
** *
13884585 GTGCTGGTACTTGGCCCATATATTGGCCCCCTAT-CCTCATCAAACCTTGAGAACTCACACGCCC
191 GTGCT-GTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * * *
13884649 TTAAAGAGCATTTGAGATTTTACAGGCTTACTGCCTGTAGCAATTAAAGTGTCTGAAATGGGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
13884714 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCAAG
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
13884779 CCAACAAAAATACAAGGATCACAT-CTACCAAATTTTGGGCCAAAACTCCTTCCGAAAAAATTTT
385 CAAACAAAAATACAAGGAT--CATGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
13884843 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
448 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
13884908 GAAACTTCACATGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
513 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
13884973 ATGCAGAAATATGAAGACATGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
578 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCC
* * * *
13885038 CGTCTCTCCGGTCGGCATAATGCCCCCTGTCCGCCCGCTCG-TTCGTTGAGTTGGCTGA-GCATA
642 CGTCTCTCTGGTCGGCATAGTGCCCCCCGTCCGCCCGCTCGTTTCGTTG-GTTGGCTTAGGCATA
* * * * * * *
13885101 CGGAGTTCATTCCAGTCTAAGATTGGACCAAA-TGAGGGTTGCGAAATAGTTAGGATC-GTAGCC
706 TGGAGTTCATTCCAGTCTAAGATCGGACTAAACTGAGGGTTGTG--GTAG-CAGGATCGGCAG-C
* * * * * *
13885164 ACACAGAGGGGGACTCGGTCGATCCTCGACTTGCACATTCCGCTCCTCTGACCGGCTGAGCACCC
767 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACA-TCCACTCCTCTGGCCGGCTGAGCACCC
* *
13885229 GTACGCTCG-TTTGTGGGTTGACTTAGGCCATAC-GAGTTCA-TCCCTGTCTACGCAACG
831 GTACGCTCGTTTTGTGGGTTGACTTAGG-CATACGGAGTTCATTCCCAGTCTAAGCAACG
* *
13885286 GAGTTCATTCCCAGTCTAAGATTCGGACCAGA-CGAGGGTTGCGGACAGCAAAACATGAT-GGCT
1 GAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTGCGG-CAGC---ACATGCTGGGCT
* * ** *
13885349 CGAGCATGTGTTGGGGCCGCATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCATCGGAGAAC
61 CGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-TCGGAGAAC
* * *
13885414 CTAACCGCGTTGCATTGGGGTTCCGCGGATCGGGGGGTCAGGGGAGTGTGCGCACATGATGTGTG
125 CTGA-C-CGATGCATTGGGGTTCCGCGGATCGGGGGGTCAGGGG-GTGTGCGCACATGATGTGCG
13885479 ATGGGTGCTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
187 ATGGGTGCTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
13885544 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAGCCATTAAAGTGTTTGAAATGGG
252 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
13885609 GACACTTTTTTTCAAATGATCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTG
317 GACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
13885674 CATGCTAACAAAAATACAAGGATCATGCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
381 CATGCAAACAAAAATACAAGGATCATGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* ** *
13885739 TTAAAAAGTCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
446 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
13885804 ATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
13885869 GCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACATTATCGATCCACAGCTTGCGCAT
576 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCAT
* * * * ** *
13885933 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCATGCTCGTTTTCGTCGGTTGGCTTAGGC
640 CCCGTCTCTCTGGTCGGCATAGTGCCC-CCCGTCCGCCCGCTCG-TTTCGTTGGTTGGCTTAGGC
* ** *
13885998 ATATGGAGTTCATTCCCAGTCTAACATCAAACTAAACTGAGGGTTGTGGCAGCAGGATCGGCAGC
703 ATATGGAGTTCATT-CCAGTCTAAGATCGGACTAAACTGAGGGTTGTGGTAGCAGGATCGGCAGC
* * * * *
13886063 ACGTAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTATGGCCGGCTGAGCACCC
767 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCACAT-CCACTCCTCTGGCCGGCTGAGCACCC
** *
13886128 ACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACG
831 GTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-ACG
* *
13886188 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
13886253 ATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGACAACCTGAC
66 ATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-TCGGAGAACCTGAC
* *
13886318 CGATGACATTGGGGTTCCGAC-GATCGGGGGGGCCGGCGGGTGTGCGCACATGATGTGCGATTGG
130 CGATG-CATTGGGGTTCCG-CGGATCGGGGGGTCAGG-GGGTGTGCGCACATGATGTGCGA-TGG
* * * *
13886382 G-GCTGATACTTGG-GTCTTATATTGGCCACCTATCCCTCATCAAACCTCGAAAACTCACACCCC
191 GTGCTG-TACTTGGCCT-TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* *
13886445 CTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGA
254 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
13886510 CACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG-AT
319 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-
* ** *
13886574 TGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGCACCAAAACGCCTTCCAAAAAAATT
383 TG-CAAACAAAAATACAAGGATCATG-CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
13886639 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCC
446 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
13886704 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATTAAAATGGCATTG
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** * *
13886769 ACACACCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGCTTGCGCATC
576 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATC
* * * * *
13886834 CCGTCTCTCTGGTTGGCATAGTGCCCATCCGTCCACCCGCTCCTTTCGTTAGTTGGCTTAGGCAT
641 CCGTCTCTCTGGTCGGCATAGTGCCC-CCCGTCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCAT
* * ** ** * * *
13886899 ACT-GAGTTCAATGCCAGTCTAAGATCGGAGTGGACCAAGGGTTATGGTAGCAAGATCGACAGCA
705 A-TGGAGTTC-ATTCCAGTCTAAGATCGGACTAAACTGAGGGTTGTGGTAGCAGGATCGGCAGCA
* * * * *
13886963 CGCAGATGGGGACCCAATCGATCCCTGACTTGCGCATCCATCTCCTCTGGCCGGCTAAGCACCCG
768 CGCAGAGGGGGACCCGATCGATCCCCGACTTGCACATCCA-CTCCTCTGGCCGGCTGAGCACCCG
* *
13887028 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 TACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13887080 CGATCAGACT
Statistics
Matches: 1559, Mismatches: 186, Indels: 84
0.85 0.10 0.05
Matches are distributed among these distances:
885 31 0.02
886 12 0.01
888 39 0.03
889 6 0.00
891 2 0.00
894 1 0.00
897 93 0.06
898 431 0.28
899 538 0.35
900 298 0.19
901 63 0.04
902 45 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (889 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGACC
GATGCATTGGGGTTCCGCGGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAACA
AAAATACAAGGATCATGCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCT
GGTCGGCATAGTGCCCCCCGTCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCAT
TCCAGTCTAAGATCGGACTAAACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGATCGATCCCCGACTTGCACATCCACTCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTTGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAACG
Found at i:13887172 original size:160 final size:159
Alignment explanation
Indices: 13886871--13887194 Score: 386
Period size: 160 Copynumber: 2.0 Consensus size: 159
13886861 TCCGTCCACC
* * * * *
13886871 CGCTCCTTTCGTTAGTTGGCTTAGGCATACTGAGTTCAATGCCAGTCTAAGATCGGAGTGGACCA
1 CGCTCCTTTCGTGAGTTGACTTAGGCATACTGAGTTCAATCCCAGTCTAAGATCAGACTGGACCA
* * * *
13886936 AGGGTTATGGTAGCAAGATCGACAGCACGCAGATGGGGACCCAATCGATCCCTGACTTGCGCATC
66 AGGGTTATGGCAGCAAGATCGACAACACGCAGAGGGGGACCCAACCGATCCCTGACTTGCGCATC
* * * *
13887001 CATCTCCTCTGGCCGGCTAAGCACCCGTA
131 CAGCCCCTCTGGCCGACTAAGCACCCGCA
* * *
13887030 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAACGATCAGACTGGAC
1 CGCTCCTTTCGTGAGTTGACTTAGGCATACTG-AGTTCAATCCCAGTCTAA-GATCAGACTGGAC
* * * *
13887094 CGAGGGTTGTGGCAGCAGGATC-AGCAACACGCAGAGGGGGACCCGACCGATCCCT-AGCTTGCG
64 CAAGGGTTATGGCAGCAAGATCGA-CAACACGCAGAGGGGGACCCAACCGATCCCTGA-CTTGCG
*
13887157 CATCTC-GCCCCTCTGGCCGACTGAGCACCCGCA
127 CATC-CAGCCCCTCTGGCCGACTAAGCACCCGCA
13887190 CGCTC
1 CGCTC
13887195 ATTCCATGCT
Statistics
Matches: 139, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
158 1 0.01
159 44 0.32
160 93 0.67
161 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CGCTCCTTTCGTGAGTTGACTTAGGCATACTGAGTTCAATCCCAGTCTAAGATCAGACTGGACCA
AGGGTTATGGCAGCAAGATCGACAACACGCAGAGGGGGACCCAACCGATCCCTGACTTGCGCATC
CAGCCCCTCTGGCCGACTAAGCACCCGCA
Found at i:13888142 original size:15 final size:15
Alignment explanation
Indices: 13888119--13888150 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13888109 TGAACTCCGT
13888119 ATGCCTAAGCCTGGG
1 ATGCCTAAGCCTGGG
*
13888134 ATGCGTAAGCCTGGG
1 ATGCCTAAGCCTGGG
13888149 AT
1 AT
13888151 CGATCGGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (15 bp):
ATGCCTAAGCCTGGG
Found at i:13889864 original size:26 final size:26
Alignment explanation
Indices: 13889828--13889880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13889818 CTGGTCCGAT
*
13889828 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
13889854 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
13889880 C
1 C
13889881 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:13890017 original size:898 final size:899
Alignment explanation
Indices: 13888132--13895300 Score: 7610
Period size: 898 Copynumber: 7.9 Consensus size: 899
13888122 CCTAAGCCTG
* * **
13888132 GGATGCGTAAGCCTGGGATCGATCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTACCGCAACC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
* * * * * *
13888196 CT-TAGTCTGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-AAAAGA
66 CTCGA-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
13888259 ATCGGGCGGGCGGGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
130 A-----CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCG
* * * *
13888324 ATAGGATGGTAGGTGGCTTTAGGCCCATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCT
190 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
* *
13888389 TGTAAATTCATACAATGGTCCCTTAAACCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
255 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * *
13888454 TATTTTTCACAATTTTCT-AAACTTTTTACGGTTCAAGATTTTTCAAAAGTTTTTCGGAAGGAGT
320 TATTTTTCACGATTTT-TGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGAGT
* * * **
13888518 TTTGGCCCCAAACTTGCTAGACGTGATCATTGTATTTTTGTTGGCATGCACACAAAAATTCAGTT
384 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACT
*
13888583 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTA
449 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
13888648 ATGGCTATTGGCAGCAAATCTGTAAAATCTCAAGTGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
514 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
13888713 TTGATGAGGGATAGGTGACCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
579 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
13888778 CACCCCCCAGCCCCCACGATCGTCGGAACCCCAATGTCGTCGGTGAGGTTCTTCGACGATGCTCT
644 CACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
*** * ** *
13888843 GGCGATGGTGCCCCGGTAAAAAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACC
709 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
* * * * *
13888908 GCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTGTGCTTAGACTGGGAAAGAA
774 GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
*
13888973 CTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGC-
839 CTC-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
* * * * * *
13889034 GGCATGGGCAAGCCGGGGATCGACTGGGTCCCCCTCTATGTGCTG-CCGATCCTGCTGCCGCAAC
1 GG-ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAAC
* *
13889098 CCTC-AGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
65 CCTCGA-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
13889162 AACGAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGTGGAAGCCGTGGATCGATAG
129 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAG
** * *
13889227 AATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATATTTATGGCTTGCA
194 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
* ** * * *
13889292 AATTGATACAATCATCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGAGGACTTGTTTTCTATT
259 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
13889357 TTTCACGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGTGTTTTGG
324 TTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGG
* **
13889422 CCCCAAACTTGGTAGATGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCCTCTAAAAA
389 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAA
* * *
13889486 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAGTGGC
454 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
13889551 TACTGGTAGCAAACTTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
519 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
13889616 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCC
584 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
** * * * * *
13889681 TTCAGCCCCCACGATCACCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACCATGCTCCGGCGA
649 CCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA
** * * *
13889746 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGTTCGAGCCCAGAATGTGCTGCCCCAAC
714 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
13889811 CTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTACACTGGGAATGAACTTCG
779 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCG
* *
13889876 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTC-
843 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAG-AGGGGCA
* * * * * *
13889933 GGATGCACAAGTCGGGGATCGGCCGGGTCCCCTTGTACGAGCTGTC-GATCCTGCTACCGTAACC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
* * ** * *
13889997 CTCGATCTGGTCTAATCTTAGACTGGGAATGAACTTCGTACACCTAAGCCAACCAATGAAACGAG
66 CTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-
* * * * * *
13890062 TGGGGCGGGCGGGCAGGCGGGCAGGCCTTAAGTCGACCAGAGAGACGGGATGTGCAAGCCATGGA
130 ----ACGAGCGGGCGGGCGGGCA---C-TACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGA
* ***
13890127 TCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
187 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
*
13890192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
252 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
13890257 TTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTC-GAGATTTTTTAAAATTTTTTCAGAAGG
317 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAAG
* * * *
13890321 AGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAACAATTCA
381 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
13890386 ACTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCTTTTCATACACT
446 ACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
**
13890451 TTAACAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGGTGAGTTCTCG
511 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCG
** * *
13890515 AGGTTTGATGAGAAATAGGGGGCCAATATAAGTGCCAAGTACCAGCACGCATCGCACATCATGTG
575 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * **
13890580 CGCACACCCCCCCGACCACCTCGATCGCCGGAACCCCAATGCCGTCTGTCAGGTTCTCCGGTGAT
640 CGCACACCCCCCAG-CCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** *
13890645 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGATACCAGCACATGCCCGAGCCCAGCATGTG
704 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
** * * * * * * *
13890710 CAACCACAACACTTGATCCGATCCAATCTTAGACTGGGAATTG-ACTCCGTATGCTTAGACTGGG
769 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA-TGAACTCCGTATGCTTAGACTGGG
* *
13890774 AATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTTAGCCGGCCAGAGGG
833 AATGAACTC-GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
*
13890839 GCG
897 GCA
* ** * * *
13890842 GGATGCGCAAGTCGGGGATCGGCCTTGTCCCCCTCTACGTGCT-ACTGATCCTACTGCCGCAACC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
* * * * * * *
13890906 CTTGGTCCGGTCCAATCTTAGACTAGAAATGAACTTCGTATGCCTAAGCCAA-CTATCGAAACGA
66 CTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAAC--
* * * * ***
13890970 GTAGACGGGCGGACGGGCGGTCACTACGCCGGCCAGAGAGACGGGATGCATAAGCCGTGGATCGA
128 G-A-ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
* * * *** *
13891035 TAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCGGGGATCGGC-TGGGTCCC
191 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATG-TGCCAAT-GCCAT---T---
*** * * * * * * * **
13891099 CCAAT-ACGTGCTACCGATCCTGC-TACCGCAACCGTCAGTTTCGTTCAA-TCTGAGACTGGGAA
246 TTTATGGCTTG-TA--AAT--T-CATA---CAA---T--GGTCCCTT-AAGCCT-TCAC---G--
* * * * * * * ** ** * *
13891161 TGAACTTTGTATGCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTA
290 TGAAGTTT-CATGGC-AAGAC--GAC-T--CGTTT--T--CTATTTTTCACG---A---------
* ** * * *
13891226 ACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCC
332 ----TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCC
* * *
13891291 AAACTTGGTAGACGTGATCCGTG-ATTTTTTGTTGGCATGCATAAAAAAATTCAACAAAAAACTC
393 AAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTC
* * *
13891355 GAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACATTAATGGCTAC
457 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
13891420 TGGTAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
522 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
13891485 GGATAGCGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
587 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * *
13891550 CGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTAAGG-T-T----C--T-CT--GGCGA--
651 CAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * *
13891602 -TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCTAGCATGTGCTGCCGCAAACA
716 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGC-AACC
*
13891666 CTCAGTCTGGTCCGATCTTAGACT-GG---G-A------ATG---A-A----G--T---C-CGTA
780 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTA
* * * *
13891706 TGCCTAACTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCG
845 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
* * ** * * * * * **
13891761 GGATGCGCAAGTCAGGGATCGGCTAGGTCCCCATCTGCATGCT-ACTGATGCTGCTGTCGCAACC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
* * * * *
13891825 CTC-AGTCCGGTCTGATCTTAGACTGGGAATAAATTTCGTATGCCTAAGCCAACCGACAAAACGA
66 CTCGA-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
13891889 GCGGGAGGACAGGCGGGTGGGCACTACGTCGGCCAAAGAGACGGGATGTGCGAGCCGTGGATCGA
130 AC--GA-G-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
** *
13891954 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTAATGGCTT
191 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
* *
13892019 GTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCT
256 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * * *
13892084 ATTTTTCATAATTTTTGAAACTTTTTACGATT-TGAGATTTTTT-TAATTTTTTCGGAAGGAGTT
321 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAAGAGTT
* * * * *
13892147 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGACATGCACAAAAAACTTCAGCTA
385 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTA
* *
13892212 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG-CCCCATTTCAGACACTTTAA
450 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
13892276 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAGGTT
515 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
13892341 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG----CA-C-C-CATCA------CAC
580 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * *
13892393 ACCCCCC-G-CCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTTCTATGGTGCTCCG
645 ACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * *
13892456 AC-AGTGGTGCCCTGACGAAGAAAAGTGCGGCACCAACACATGC-CTGGGCCCAGCATGTGCTGC
710 GCGA-TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGC
* ** *
13892519 CACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
773 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * * *
13892584 ACTCCGTATGCCTAAGCCAACTCACGGAACGAGCGTGCGAGCGCTCAGCCAGCCAGAAGGGC-
838 ACT-CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
* * * *
13892646 GAAATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGT-TGATCCTGCTACCCCAAC
1 G-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAAC
* * * * *
13892710 CCTATG-TTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATG--A--
65 CCT-CGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
13892770 AACGAGTGGGCGGGTGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAG
129 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAG
13892835 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
194 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
* * *
13892900 AATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
259 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * * * *
13892965 TTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCAAAAAGAGTTTTTG
324 TTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGG
* *
13893030 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAGAAA
389 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAA
*
13893095 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGC
454 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * * * *
13893160 TACTGGTAGCAAACCTTTAAAATCTCAAATGCTTTTTAAGGTGCTGTGAGTTCTTGAGGTTTGAA
519 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
13893225 GAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGCACACCC
584 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * * * * ***
13893290 CCCCGGCCCCCCCGTTTGTCTGAACCCCAATACTACCGGTCAGGTTCTCCGACGATGCTCCGGCG
648 CCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCG
* * *
13893355 ATGGTACCCCAACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA
713 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA
* * * **
13893420 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAAGAATGAACTCC
778 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-C
* * * *
13893485 GTATGCCTAAGTCAACCCACGAAACAAGTGTGGGGGCGCTCAGCCGACCAGAGGGGCA
842 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
*** ** * * * * * * **
13893543 GGATGTTTAAGCTAGGGATCGGCCGAGTCCCACTTTGCATGCTG-CTGATCTTGCTGTCGCAACC
1 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
* * * *
13893607 CTCGGTCCGGTCCAATCTTGGACTGGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
66 CTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-
* * *
13893672 CGGGCAGACGGGAGAACGGGGGGGCGGGCACTACATCGGCCAGAAAGACGGGATGTGCAAGCCGT
127 C--G-A-AC--GAG--CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGT
* **
13893737 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTT
184 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
*
13893802 ATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
249 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
13893867 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTTAAATTTTTTCAGAA
314 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAA
** *
13893932 AGAGTTTTGGCCCC-AACTTCATAGACATGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATT
379 AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* ** *
13893995 CAGCTAAAATTTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
444 CAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
13894060 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
509 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
13894125 GAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
574 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
13894190 GTGCACACCTCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCT-C--CG
639 GCGCACA-C-CCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* *
13894252 A--------CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
702 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
* * * * ** *
13894309 TGCTGTCGCAACCCTCGGTCTGGTCCGATCCTGGACTGGAAACAAACTCCGTATGCTGAGACTGG
767 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
13894374 GAATGAACTCTGTATGCCTATGTCAACCCATGAAATGAA-CGTGCGGGTGCTCAACCGACCAGAG
832 GAATGAACTC-GTATGCCTAAGTCAACCCACGAAA-CAAGCGTGCGGGTGCTCAGCCGGCCAGAG
*
13894438 GGGCG
895 GGGCA
* **
13894443 GGATGCGCAACCCAGCCAGAGGGGCAGGATGCATAAGCCGGGGATCAGTTTGGTCCCCCTCTGTG
1 GGATGCGC-A---AGCC------G--GG--G-AT----C--GG--CCG---GGTCCCCCTCTACG
* * * * * * * * *
13894508 TTCTG-CTGATCCTACTATCGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTCTGT
40 TGCTGTCTGATCCTGCTACCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGT
* * * * *
13894572 ATGCCTAAGCCAATCGACGAAACGAGCAGACGGGCGGGCGAGCGGGCACTACGCCGGCCATAGAG
105 ATGCCTAAGCCAACCGACGAAAC--G-A-ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
13894637 ACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCCTCATATTAT-T
166 ACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT-TCT
*
13894701 -TGCATGACAATGCCATTTTTTATGGCTTGTAAAATTCATACAATGGTGCCCTTAAGCCTTCACG
230 ATG--TGCCAATGCCA-TTTTTATGGCTTGT-AAATTCATACAATGGT-CCCTTAAGCCTTCAC-
* *
13894765 GTGAAGTTTCATGGCACGACGGACTCATTTTCT-TATTTTCACGATTTTTTGAAACTTTTTTTAC
289 GTGAAGTTTCATGGCAAGAC-GACTCGTTTTCTAT-TTTTCACGA-TTTTTGAAAC--TTTTTAC
* * *
13894829 GGCTC-GAGATTTTTTAATATTTTTTTCAG-AAGCAGGTTTGGCCCCCAAAC-TGGTAGACGTGA
349 GGTTCAG-GATTTTTTAA-AATTTTTTCAGAAAG-AGTTTTGG-CCCCAAACTTGGTAGACGTGA
* * *
13894891 TCCTTGTATTCTTT-TTGGCATGCA-TAAAAAATTCAGCTAAAAAACTCGAAGTGATACAAGA-A
410 TCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAACT-AAAAACTCGAAGTG-TACAAGATT
* * * * *
13894953 TTATGAACAATTG--AAAAGTGT-CCCAGTTCAGACCAC-TTAATGGCTACTGGTAGCAAACCTG
472 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTG
* * *
13895014 TAAATAT-TCAAATGTTGTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
536 TAAA-ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
13895078 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCCCCGAGCCCCCTCGAT
600 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-AGCCCCCCCGAT
* * * * ** *
13895142 CGTCGGAACCCCAATACTGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACAAA
664 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * *
13895207 GAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGATCCG
729 GAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
13895272 ATCTTAGACTGGGAATGAACTCCGTATGC
794 ATCTTAGACTGGGAATGAACTCCGTATGC
13895301 CTAAGTCAAC
Statistics
Matches: 5287, Mismatches: 725, Indels: 476
0.81 0.11 0.07
Matches are distributed among these distances:
847 33 0.01
848 2 0.00
849 7 0.00
850 4 0.00
855 1 0.00
856 7 0.00
857 2 0.00
858 3 0.00
859 2 0.00
860 24 0.00
861 54 0.01
863 115 0.02
864 116 0.02
865 29 0.01
871 3 0.00
874 1 0.00
875 1 0.00
878 214 0.04
879 120 0.02
880 116 0.02
881 5 0.00
882 2 0.00
883 1 0.00
884 4 0.00
885 6 0.00
886 145 0.03
887 6 0.00
888 2 0.00
890 4 0.00
891 4 0.00
892 7 0.00
893 4 0.00
894 6 0.00
895 2 0.00
896 302 0.06
897 7 0.00
898 535 0.10
899 265 0.05
900 165 0.03
901 4 0.00
902 3 0.00
903 123 0.02
904 80 0.02
905 2 0.00
906 5 0.00
907 249 0.05
908 238 0.05
909 303 0.06
910 229 0.04
911 59 0.01
912 243 0.05
913 5 0.00
914 1 0.00
915 7 0.00
916 5 0.00
917 6 0.00
918 86 0.02
919 253 0.05
920 22 0.00
921 18 0.00
922 23 0.00
923 24 0.00
924 25 0.00
925 56 0.01
926 89 0.02
927 154 0.03
928 33 0.01
929 28 0.01
930 43 0.01
931 18 0.00
932 4 0.00
933 4 0.00
934 3 0.00
935 2 0.00
936 102 0.02
938 3 0.00
940 3 0.00
942 5 0.00
944 52 0.01
945 22 0.00
947 4 0.00
949 2 0.00
950 1 0.00
956 1 0.00
957 2 0.00
958 304 0.06
959 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCTGATCCTGCTACCGCAACC
CTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA
CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCGTAT
GCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
Found at i:13890766 original size:26 final size:26
Alignment explanation
Indices: 13890737--13890789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13890727 CCGATCCAAT
13890737 CTTAGACTGGGAATTG-ACTCCGTATG
1 CTTAGACTGGGAA-TGAACTCCGTATG
*
13890763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13890789 C
1 C
13890790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13892578 original size:26 final size:26
Alignment explanation
Indices: 13892542--13892594 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13892532 CCAGTTCGAT
13892542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13892568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13892594 C
1 C
13892595 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13893467 original size:26 final size:26
Alignment explanation
Indices: 13893438--13893490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893428 CCGGTCTGAT
** *
13893438 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
13893464 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
13893490 C
1 C
13893491 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:13894462 original size:26 final size:25
Alignment explanation
Indices: 13894416--13894474 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
13894406 AAATGAACGT
* *
13894416 GCGGG-TGCTCAACCGACCAGAGGG
1 GCGGGATGCGCAACCCACCAGAGGG
13894440 GCGGGATGCGCAACCCAGCCAGAGGG
1 GCGGGATGCGCAACCCA-CCAGAGGG
*
13894466 GCAGGATGC
1 GCGGGATGC
13894475 ATAAGCCGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 5 0.17
25 9 0.30
26 16 0.53
ACGTcount: A:0.22, C:0.29, G:0.42, T:0.07
Consensus pattern (25 bp):
GCGGGATGCGCAACCCACCAGAGGG
Found at i:13898177 original size:26 final size:26
Alignment explanation
Indices: 13898148--13898200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13898138 CTGGTCCGAT
* *
13898148 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
*
13898174 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
13898200 C
1 C
13898201 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCGTATG
Found at i:13899057 original size:26 final size:27
Alignment explanation
Indices: 13899021--13899078 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
13899011 CCGGTCCGAT
13899021 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
13899047 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
13899074 CTTAG
1 CTTAG
13899079 TCAAACCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:13899946 original size:25 final size:26
Alignment explanation
Indices: 13899905--13899956 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13899895 CTGATCTGAT
*
13899905 CTTAGACTGGTAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
13899931 CTTAGA-TGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
13899956 C
1 C
13899957 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:13900091 original size:883 final size:880
Alignment explanation
Indices: 13896876--13900233 Score: 4466
Period size: 883 Copynumber: 3.8 Consensus size: 880
13896866 ACTGGGATTG
*
13896876 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
13896941 CCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* *
13897006 TCAATTGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* **** * * *
13897071 GCCAAGTACCAGCACCCATCGCACA-TCATTTGCGCAAACCCCTCGATCGCCGGAACCCCGATAC
196 GCCAAGTACCAGCACCCATCGCACACCCCCCCG-GC---CCCCCCGATCGTCGGAACCCCAATAC
* * * * * *
13897135 CGTCGGTCAGGTTCTCCAACGATGCTTCGACAATGGTGCCCCGGCGAAGAAAAATGTGGTACCAG
257 TGCCGGTCAGGTTCTCC-ACGA-GC-TCG---ATGGTGCCCCGGTGAAGAAAAGTGCGGCACCAG
* * * * *
13897200 CACATGCCCGAGCCCAACATGTGCTACCAAAACCCTCGATCT-AGTCCGATCTTGGACTGGGAAT
316 CACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAAT
* * * * *
13897264 GAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCATGAAATGAGCGTA
380 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
13897329 CGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGCC-AGGTCCCCCTCTGC
445 CGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGA-GTCCCCCTCTAC
* * * * * *
13897393 GTGCTGTCGATCCTTCTACCACAACCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCTGTA
509 GTGCTGCCGATCCTGCTACCACAACCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTA
* * * * * *
13897458 TGCCTACGCCAACCGATGAAACAAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGACATGGG
574 TGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
13897523 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGAATGC
639 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
13897588 CAATGCCATTCTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
704 CAATGCCATTTTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
13897653 GGCTAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTGTTAA
769 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTGTTAA
13897718 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-GCAAGTGATCC
834 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG-AAGTGATCC
* * *
13897765 TTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACTAAGTGTACAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
13897830 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* *
13897895 TCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
13897960 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGG-CCCCCCGATCGTCGGAA
196 GCCAAGTACCAG----CA-C-C-CATC----G--CACACCCCCCCGGCCCCCCCGATCGTCGGAA
* *
13898024 CCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAAG-
248 CCCCAATACTGCCGGTCAGGTTCTCC-ACGA-GCT----CGATGGTGCCCCGGTGAAG-AAAAGT
* * * * *
13898088 GTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTTGGTCTGGTCCGATCTTAA
306 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAG
* * *
13898153 ACTGGGAATGAACTCTGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTGAACCCACGAA
371 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** * * * *
13898218 ACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCCAGGATCTGTCGGGTCC
436 ACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCC
* * * * * *
13898283 CCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCTGGTCCCATCTTAGACTGGGAATG
501 CCCTCTACGTGCTGCCGATCCTGCTACCACAA-CCTCGGTCCGGTCCGATCTTAGACTGAGAATG
* * * *
13898348 AACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAG
565 AACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG
* *
13898413 AGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
630 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
13898478 TCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTG
695 TCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTG
*
13898543 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAG
760 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG
* * *
13898608 ATTTGTTAAAATTTTTTCGAAAGGAGTTTTGGCCCGAAA-TTGGTAGACGTGATCC
825 ATTTGTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCC
* * *
13898663 TTGTATTTTTG-TGGCATGTATAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
13898727 CAATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* * *
13898792 TCAAATGCTTTTTAAGGGGGTGTGAGTGCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
13898856 GCCAAGTACCAGCACCCATCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGA-TGC
196 GCCAAGTACCAGCACCCATCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT-ACTGC
* * *
13898920 CGGTCAGGTTCT-C-CGA---CGATGGTGCCCTGGTGAAGAAAAGTGCAGCACCAGCACCTGCCC
260 CGGTCAGGTTCTCCACGAGCTCGATGGTGCCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCC
* * ** * * * *
13898980 GAGCCTAGCATGTGCTGTCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATA
325 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* *
13899045 TGCTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAAACCACGAAACGAGCGTGCGGGCGCTCA
390 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
13899110 ACCGGCCAGAAGGGCAGGATACGTAAGCCGAGGATCGGCCG-GGCCCCACTCTACGGGCTGTCGA
455 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCC-CTCTACGTGCTGCCGA
* ** *
13899174 TCCTGCTACCGTA-AACCTCGGTCTGGTTTGATCTTAGACTGAGAGTGAACTCCGTATGCCTAAG
519 TCCTGCTACC--ACAACCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
* * ** * *
13899238 CCAACGGACGGAATGAGCAGGGCGGGCGGGCGGGCGGGAGGGCACTACGTTGGCCATAGAAACGG
582 CCAACCGAC-GAA--A-CA-AGCGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGG
* *
13899303 GATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATACTTCTGCATG
638 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
13899368 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
703 CCAATGCCATTTTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
13899433 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTTTG-GATTT-TT
768 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTGTT
* * * *
13899496 TAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCC
832 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCC
13899545 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
13899610 CCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
13899675 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
13899740 GCCAAGTACCAGCACCCATCGCACACCCCTCTGGCCCCCCCAATCG-CTAGAACCCCAATACAGT
196 GCCAAGTACCAGCACCCATCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATACTGC
* * *
13899804 CGGTTAGGTTCT-C-CG-G-T-GATGATGCCCCAGTGAAGAAAAGTGCGGCACCAGCACATGCCC
260 CGGTCAGGTTCTCCACGAGCTCGATGGTGCCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCC
* * * * * * *
13899864 GAGCCTAGCATGCGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGTAATGAACTCCCTA
325 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* *
13899929 TGCTTAGA-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTCCGGGCGCTCA
390 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
13899993 GCCAGCCAGATGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGTTGCCGAT
455 ACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGAT
* ** * * * *
13900058 CCTACTACCACAACCGTTAGTCCGGTCTGATCTTAGAATGAGAATGAACTCCGTATACCTAACCC
520 CCTGCTACCACAACC-TCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* *
13900123 AACCGACAAAACAAGC-GGCGGGCGGGCAAGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGC
584 AACCGACGAAACAAGCGGGCGGGC-GG---GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
13900187 AAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCAT
645 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
13900234 TTGAGGTTTT
Statistics
Matches: 2191, Mismatches: 225, Indels: 118
0.86 0.09 0.05
Matches are distributed among these distances:
872 10 0.00
873 252 0.12
874 5 0.00
876 1 0.00
877 81 0.04
878 17 0.01
879 2 0.00
880 1 0.00
881 35 0.02
882 232 0.11
883 331 0.15
884 228 0.10
885 1 0.00
889 199 0.09
890 1 0.00
891 1 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 1 0.00
896 31 0.01
897 158 0.07
898 275 0.13
899 314 0.14
900 1 0.00
901 2 0.00
902 5 0.00
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (880 bp):
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACTGCC
GGTCAGGTTCTCCACGAGCTCGATGGTGCCCCGGTGAAGAAAAGTGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGATC
CTGCTACCACAACCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTGTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCC
Found at i:13900491 original size:26 final size:26
Alignment explanation
Indices: 13900462--13900511 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13900452 GTCTAATTTG
* *
13900462 AGACTAGGAATGAACTCCGTATGCTT
1 AGACTAGGAATCAACTCCATATGCTT
*
13900488 AGACTGGGAATCAACTCCATATGC
1 AGACTAGGAATCAACTCCATATGC
13900512 CTAACTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
AGACTAGGAATCAACTCCATATGCTT
Found at i:13903156 original size:26 final size:26
Alignment explanation
Indices: 13903127--13903179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13903117 CTGGTCCGAT
* *
13903127 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
*
13903153 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCGTATG
13903179 C
1 C
13903180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCGTATG
Found at i:13904064 original size:26 final size:26
Alignment explanation
Indices: 13904024--13904076 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13904014 CCGGTCCGAT
*
13904024 CTTAGACTGGTAATGAACTTCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
13904050 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
13904076 C
1 C
13904077 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:13905347 original size:878 final size:876
Alignment explanation
Indices: 13900294--13906458 Score: 6496
Period size: 848 Copynumber: 7.0 Consensus size: 876
13900284 CCATTGCACA
* *
13900294 TCATGTGCGCACACCCCTCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
1 TCATGTGCGCACA-CCCTCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * **
13900359 TCTGACGATGCTCCGGCGATGGTGCCACGACGAAGAAAAATGCAGCACCAGCACATGCCCGA-CC
64 TCTGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * * * * **
13900423 CAACATGTGCTACTGCAATCCTCGGTCCGGTCTAAT-TTGAGACTAGGAATGAACTCCGTATGCT
129 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT-AGACT-GGAATGAACTCCGTATGCT
* * * * ** *
13900487 TAGACTGGGAATCAACTCCATATGCCTAACTCAACCCGCGAAACGAGCGTGCGACCGTTCAGCCG
192 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
13900552 GCCAGAAGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTTGATCCTA
257 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
** * * * * ** *
13900617 CTATCGCAACCCTTGGTTTGGTGTAATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACC
321 CTGCCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * **
13900682 GATGACACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGTGAGAGAGACGGGATGCGCAAGC
386 GACGAAACGAGCGGGC-GGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
* *
13900747 CGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATT
450 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
13900812 TTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
515 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
13900877 CTCGTTTTTCTATTTTTAATGATTTTTGAAACTTTTT-CTTGTTCTGGATTTTTTAAAATTTTTT
580 CTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGC-GGTTCGGGATTTTTTAAAATTTTTT
* * * * *
13900941 TGGAAGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCCATGCATAAA
643 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-CATGCACAAA
* *
13901006 AAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
707 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
13901071 TAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATATGAAATGCTCTTTAAGGGGGAGTGA
772 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
13901136 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCG
837 GTTCTCGAGGTTTGATGAGGGATAGGGGGCC-A-AT--------A-T------A---AG-G
*
13901197 CACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGG
1 ----TCATGTGCGCACACCCTCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * ** * *
13901261 TTTTCAGGTGATGCTCCTACGATGGTGCCTCGACGAAGTAAAATGTGGCACCAGCACATGCCCGA
61 TTCTCTGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
**
13901326 GCCCAGCATGTATTGCCGCAA-CC-C--T-T-G---G-TC-----C----A-G---TCCG-AT-C
126 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGC
** * * *
13901366 TTAGACTGGGAATGAACTCTATTTGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCC
191 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * **
13901431 GGCCAGAGGGGCAGGATGGGCAA-CAGGGGATCAG-CTGGGTCCCCATCTGCATGCTACCGATCC
256 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTC-GGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * ** *
13901494 TACTGTCGTAACCCTCGATCTGGTTCAATCTTAGACTAGGAATGAACTTTGTATGCGTAAGCCAA
319 TGCTGCCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * ** *
13901559 CCGAGGAAACGAGCGGGCGGGTGGGCGGCCGGGCACTACGTCGGTCAGAGAGACAAGATGCACAA
384 CCGACGAAACGAGCGGGC-GGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* * ***
13901624 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTATGTGCCAATGCCA
448 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
13901689 TTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGAC
513 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
13901754 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
578 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * **
13901819 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCA-TGAA
643 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
13901883 AAATTTAGCTAAAAACACGAAGTGTACAAGATTTTTGTGACCATTTTGAAAAAAATGTCCCCATT
708 AAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCA-TTTGAAAAAAGTGTCCCCATT
* * * *
13901948 TCACACACTTTAATGGCTATTGGCCAGCAAACCTATAAAATCTCAAATGCTCCTCAAGGGGGTGT
771 TCAGACACTTTAATGGCTACTGG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13902013 GAGTTCT-G-GGGTTGATGAGGGATAGGGGGCCAATATAAGGG
835 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GG
* * * *
13902054 CCAAGTACAGCACCCATCACACATCATGTGCGCAC-ACCCCTCCGCCCCCCATCGTCGGAACCCC
1 TCATGTGC-GCA--CA-C-C-C-TC-----C-C-CGGCCCC-CCG------ATCGTCGGAACCCC
* ** * **
13902118 AATTGTCGCC-GTCAGGTTCTCT-AGTGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCA
45 AA-TGCCGCCGGTCAGGTTCTCTGA-TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTG
** * ** *
13902181 GCACCAGCACATGTCCAAAGCCCAGCATGGTGCTGTCGCAAACCCTCGGT-TGGTTTGATCTGAG
108 GCACCAGCACATG-CCCGAGCCCAGCAT-GTGCTGCCGC-AACCCTCGGTCTGGTCCGATCTTAG
* * *
13902245 ATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTGGACTAAGTTTCAA-ACA
170 ACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-T-GCCTAAG--TCAACCCA
* * * * * *
13902309 CG-AACGAGCGTGGCGGGGCGCTCAGCCAGCCGACAGGGGCGGGATGCACAAGTCGAGGATTGGT
230 CGAAACGAGCGT-GC-GGGCGCTCAGCCGGCC-AGAGGGGCGGGATGCGCAAGCCGGGGA-TCGT
* * * **
13902373 CGGG--CCCCT-TTCGCTG-TGTCGATCCTTGGCT-CCTGC-A-CCTCG-GCT-GTCCTGTCTTA
291 CGGGTCCCCCTCTGCG-TGCTGTCGATCC-T-GCTGCC-ACAACCCTCGATCTGGTCCAATCTTA
* * * * * ** *
13902429 GACTGGGAGATGAACTTTCGT-TGCCTAAAGGCAAAC-A-AACAAC-AGCGGGC-AT-TAC-GTC
352 GACTGGGA-ATGAAC-TCCGTATGCCT-AAGCCAACCGACGA-AACGAGCGGGCGGTGGGCGGGC
* ** *
13902487 -GG--CTA-A---G---GAGAGAC--GATGTGCAAG-CGTCGGAAAGAGAAGTCGGTGGTAGGTG
413 GGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGT-GGATCGA-TAG--GGTGGTAGGTG
*
13902539 GGTTTAGGCACA-CTTCATACTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
474 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
13902603 TGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
539 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * *
13902668 TTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTGGGAAGGAGTTTTAGCCCCAAACTTG
604 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
13902733 GTAGACGTGATGCTTGTA-TTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTA
669 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
13902797 GAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
734 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
13902862 AACCTAT-AAATCTAAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
799 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
13902925 GGCCAATATACGGGCCAAGTACTAGCACCCATCG
864 GGCC-A-AT--------A-TA--AG--------G
* * * *
13902959 CACATCATCTGCGCACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGG
1 ----TCATGTGCGCACACCCTCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * ** * * *
13903023 TTCTTTGGTGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAAGGTGACACCAGCACATGCTCGA
61 TTCTCTGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
* *
13903088 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAAACTGGGAATGAACTCTGTATG
126 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATG
* * * * *
13903153 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGT
190 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** *
13903218 CTGCCAGAGGGGTGGGATGCGCAAGCCCAAGATCTGTCGGGTCCCCCTCTGCGTGCTATCGATCC
255 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGTCGATCC
*
13903283 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGCCA
319 TGCTGCCACAACCCTCGATCTGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
13903347 ACCTACGAAACGAGCAGGC---GGGCGGGCGGGCACTAC-GCGGCCAAAGAGATGGGATGCGCAA
383 ACCGACGAAACGAGCGGGCGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* * *
13903408 GCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
448 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
13903473 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATCAAGTTTTATGGCAAGAC
513 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13903538 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CTAGTTCTGGATTTTTTAAAAATTTT
578 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC-GGTTCGGGATTTTTTAAAATTTTT
* * * *
13903602 T-GGATGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCATAAA
642 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13903666 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AATAAAATTGTCCCTATT
707 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATT
* *
13903730 TCAGACACTTTAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
771 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
13903795 AGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGG
836 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GG
* * * *
13903837 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCACCCGATCGTCGAAACC
1 TC-A-T----G------T-GCGCA-CA------C-C-CTCCCCGGCCC-CCCGATCGTCGGAACC
* * * * * ** * *
13903902 CTAATACCGCCGGTAAGGTTCTCCGACGATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGCG
43 CCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTG
* * *
13903967 ACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
108 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* *
13904032 GGTAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
173 GG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * * * *
13904097 AGTGTGCCGGCGTTCAGCCGGCCAGAGGGGCAGGATCCGTAATCCGGGGATTGGCCAGGTCCCCC
237 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCCCCC
* * * * * * * * * *
13904162 TCT-TGTGGTGTCGATCCTGCTACCATAACCCTTGGT-TCCGTTCGATCTTAGATTGGGAATGAA
301 TCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCT-GGTCCAATCTTAGACTGGGAATGAA
* * * **
13904225 CTCCGTATGCCTAAACCAACCGACGAAACAAGCGGGC---GGGCGGGCAGGCACTATGCCGGCCA
365 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTGGGCGGGCGGGCACTACACCGGCCA
13904287 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
430 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *** *
13904352 CTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGT
495 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
13904417 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTCGCGGTTTGG
560 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGG
* ** *
13904482 GATTTTTTAAAATTTTTTCGGAAGGAATGGTGGCCACAAACTTGGTAGACGTGATCCTTGTATTT
625 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
13904547 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAGAAGATTTTGTAACCATTTGA
690 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
13904612 AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACCGGCAGCAAACCTGTAAAATCTCAAATGC
755 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
*
13904677 TCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-G
820 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** *
13904733 TCATGTGCGCACACCCTCCCCGGCCCCCCGATCGTCAAAACCCCAATGCCGCCGATCAGGTTCTC
1 TCATGTGCGCACACCCTCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
13904798 TGATGATGCTCTGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
66 TGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* * * * *
13904863 GCATGTGGTGCCGCAACCCTCGGTCTGATCCGATTTTAGAGTGCGAATCAACTCCGTATGCTTAG
131 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG-GAATGAACTCCGTATGCTTAG
* * *
13904928 ACTCGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
195 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
13904993 AGAGGGGCGGGATGCGCAAGCCGGGGATCGTCTGGGTCCCCCTCTACGTGCTATCGATCCTGTTG
260 AGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
*
13905058 CCACAACCCTCGATCTGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGAC
324 CCACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * **
13905123 GAAATGAGCGGGCGTGTGGGCGGGCGGGCACTATACCGATCAGAGAGACGGGATGCGCAAGCCGT
389 GAAACGAGCGGGCG-GTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
13905188 GGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
453 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
13905253 ATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
518 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * * *
13905318 ATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAACTTTTTTCGGAG
583 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
13905383 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTAT-TTGGCATGCACAAAAAAAT
648 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAAT
* * * *
13905447 TCAGCTAAAAACTTGAAATGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAAAC
712 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
13905512 ACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCT
777 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
13905577 CGAGGTTTGATGAGGGATTGGGGGCCAATGTAAGGG
842 CGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GG
* * * * ** * * *
13905613 CCAAGTAC-CAGCACCCAT---C-GCACATC-AT-GT-GGCACCCTAATGCCGTCGGTCAGGTTC
1 TCATGTGCGCA-CACCC-TCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
13905670 TCCTG-CGATGCTCCAGCGATAGTGCCCCGATGAAGAAAAATGTGACACCAGCACATGCTCGAGC
64 T-CTGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* *
13905734 CCAGCATGTGCTGCCACAA-GC-C--TC--G---G----T---CT---A-G---TCCG-AT-CTT
128 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTT
* * ***
13905774 AGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAAAGG
193 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
13905839 CCATAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACATGCTGCCGATCCTGC
258 CCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
* * *** * **
13905904 TGCCGCAACCCT-TAGTCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACC
322 TGCCACAACCCTCGA-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
13905968 AACGAAATGAGTGGGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGC
386 GACGAAACGAGCGGGC-GGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGC
**
13906033 CGTGGATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTCTGCATGCCAATGCCATT
450 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
13906098 TTTATGGCTTGTAAATTCATAGAATGATCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACCA
515 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
13906163 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTCA
580 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
** * * * * *
13906228 GAAAAACTTTTGGCCGCAAACTTGGTAGATGTGATCCCTGTATTTTTGTTTGCATGCACAAAAAA
645 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
13906293 ATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAG
710 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
13906358 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGAGTGTGAGTT
775 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
13906423 CTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
840 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
13906459 GCCAAGTACC
Statistics
Matches: 4475, Mismatches: 578, Indels: 471
0.81 0.10 0.09
Matches are distributed among these distances:
846 2 0.00
847 14 0.00
848 597 0.13
849 5 0.00
850 4 0.00
853 5 0.00
854 4 0.00
856 2 0.00
857 3 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 2 0.00
865 1 0.00
866 6 0.00
867 5 0.00
868 1 0.00
870 2 0.00
872 4 0.00
873 309 0.07
874 199 0.04
875 17 0.00
876 37 0.01
877 45 0.01
878 576 0.13
879 309 0.07
880 89 0.02
881 5 0.00
882 33 0.01
883 39 0.01
884 35 0.01
885 82 0.02
886 88 0.02
887 120 0.03
888 239 0.05
889 90 0.02
890 4 0.00
891 2 0.00
893 1 0.00
894 3 0.00
895 77 0.02
896 369 0.08
897 464 0.10
898 261 0.06
899 10 0.00
900 4 0.00
901 22 0.00
902 25 0.01
903 31 0.01
904 33 0.01
905 127 0.03
906 38 0.01
907 21 0.00
908 5 0.00
909 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
TCATGTGCGCACACCCTCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
TGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
ACAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGTGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGG
Found at i:13907386 original size:26 final size:26
Alignment explanation
Indices: 13907357--13907409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13907347 CTGGTCCGAT
* *
13907357 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13907383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13907409 C
1 C
13907410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13908073 original size:26 final size:26
Alignment explanation
Indices: 13908044--13908096 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13908034 CTGGTCTGAT
*
13908044 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13908070 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13908096 C
1 C
13908097 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13908493 original size:690 final size:687
Alignment explanation
Indices: 13907148--13908525 Score: 2014
Period size: 687 Copynumber: 2.0 Consensus size: 687
13907138 GTTTGATGAG
* *
13907148 GGATAGGGGGCCAATATAGGGGCAAATACCAGCACCCATCGCACATCAGGTGCGCACACCCCCTC
1 GGATAGGGGGCCAATATAAGGCCAAATACCAGCACCCATCGCACATCA-GTGCGCACACCCCCTC
** * * * **
13907213 GGCTCCCCCGATCGTCGGAACCCCAATTCCGTCGATCAGGTTCTCCGACGATGATCTGGTGATGG
65 CCCCCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGATCCAGTGATGG
* * * * * *
13907278 TGCCCCGATGAAGAAAAATGTGGCACTAACACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCT
130 TGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
* *
13907343 CGGTCTGGTCCGATCTTAGATTGGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
195 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
13907408 GCCTAAGTCAACCCACGAAACGAACGTGCGGGTACTTAGATGGCCAGAGGGGCGGGATGCGCAAG
260 GCCTAAGTCAACCAACGAAACGAACGTGCGGGTACTCAGATGGCCAGAGGGGCGGGATGCGCAAG
* ** ****
13907473 CCGGGAATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTTTTGGCAACCCTTGGTCCGGT
325 CCGGGAATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTTACCACAACCCTTGGTCCGGT
*
13907538 CTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCAG
390 CTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAACGAACGGGCAGGCAG
** *
13907603 TTACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTA
455 GCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTA
*
13907668 GGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
520 GGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
13907733 CTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
585 CTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
*
13907798 CTTTTTACGATTCGGGATTTTTTAAAA-TGTTTCGAAA
650 CTTTTTACGATTCGAGATTTTTTAAAATTGTTTCGAAA
* *
13907835 GGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA-TGCGCACACCCCTTC
1 GGATAGGGGGCCAATAT-AAGGCCAAATACCAGCACCCATCGCACATCAGTGCGCACACCCCCT-
* *
13907899 CCCCACCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGTGAT
64 CCCC-CCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGATCCAGTGAT
* *
13907964 GGTGCCCCGACGAA-CAAAATGCGGCACCAACACATGCCCGAGCCCAGTATGTGCTACCGCAACC
128 GGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACC
* *
13908028 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
193 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
13908093 ATGCCTAAGTTAACTAATGAAACGAGCGTGCGGGTGCTCAGCCT-GCCAGAGGGGCGGGATGCGC
258 ATGCCTAAGTCAACCAACGAAACGAACGTGCGGGTACTCAG-ATGGCCAGAGGGGCGGGATGCGC
* * *
13908157 ATGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTAC-TACCACAACCCTCT-GTC
322 AAGCCGGGAATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTTACCACAACCCT-TGGTC
* * *
13908220 CGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCTTAAGCAAACCGACGAAACGAGCGAGCGG
386 CGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAACGA---A-CGG
* * * *
13908285 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
447 GCAGGCAGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAG
***
13908350 TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
512 TGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAA
* * * *
13908415 AATTGTCCCTTAAGCCTTCACGTGAAG-TTCTATGGCAAGACGACTCATTTTTTATTTTTCATGA
577 AATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ACGGCAAGACGACTCATTTTCTATTTTTCACGA
* * *
13908479 TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
641 TTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTGTTTCGAAA
13908526 AGAGTTTTGG
Statistics
Matches: 614, Mismatches: 66, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
686 77 0.13
687 218 0.36
688 95 0.15
689 4 0.01
690 211 0.34
691 9 0.01
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (687 bp):
GGATAGGGGGCCAATATAAGGCCAAATACCAGCACCCATCGCACATCAGTGCGCACACCCCCTCC
CCCCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGATCCAGTGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCAACGAAACGAACGTGCGGGTACTCAGATGGCCAGAGGGGCGGGATGCGCAAGC
CGGGAATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTTACCACAACCCTTGGTCCGGTC
TGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAACGAACGGGCAGGCAGG
CACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAG
GCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGATTCGAGATTTTTTAAAATTGTTTCGAAA
Found at i:13910222 original size:886 final size:885
Alignment explanation
Indices: 13907904--13912184 Score: 5207
Period size: 887 Copynumber: 4.8 Consensus size: 885
13907894 CCTTCCCCCA
* * *
13907904 CCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGA-CGATGGTGC
* * * *
13907969 CCCGACGAA-CAAAATGCGGCACCAACACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCGG
65 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
13908033 TCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
130 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * * * *
13908098 TAAGTTAACTAATGAAACGAGCGTGCGGGTGCTCAGCCTGCCAGAGGGGCGGGATGCGCATGTCG
195 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCA
* * * * *
13908163 GGGATCAGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAACCCTCT-GTCCGGTCTG
260 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCT-TGGTCCGATCTG
* * * *
13908227 ATCTTAGACTTGGAATGAACTCCGTATGCTTAAGCAAACCGACGAAACGAGCGAGC-GGGCGGGC
324 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGC
*
13908291 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
389 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
13908356 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATTGT
454 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
13908421 CCCTTAAGCCTTCACGTGAAGTTCTATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGA
519 CCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAA
* * * * *
13908486 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGCACCAAACTTGGTAA
584 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGA-AGTTTTGGCCCCAAACTTGGTAG
* * *
13908551 ACATGATCCTTGTATTTTTGTTGCCATGCCACAAAACCAATTCAGCTAAAAACTCGAACGTGTAC
648 ACGTGATCCTTGTATTTTTGTTGGCATG-CACAAAA-AAATTCAGCTAAAAACTCGAA-GTGTAC
* *
13908616 AAGATTTT-TGACCATTTTG-AAAAAGTGTCCCAATTTCAGACA-TTTAAATGGCTACTAGCCAG
710 AAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACT-GGCAG
* * *
13908678 CAAACCTATAAAATCTTCAAATGCTCTCTAAAGGGGT-TGTAGTTCTCGAGGATTGATGAATGGA
772 CAAACCTATAAAATC-TCAAATGCTCTTTAAAGGGGTGTG-AGTTCTCGAGGTTTGATG-AGGGA
* * * * *
13908742 TATGGGAAGCCAATATAA-ACCAGTAAACCAGCACCAATCGCACATCATGACGCTCTACCCCCCG
834 TA-GGG-GGCCAATATAAGGCC------CAAGTACC-A--GCACA-CAT--CGCAC-ACCCCCCG
13908806 GC
884 GC
* * *
13908808 CCCCCCGAT-GCCGAAACCCCCCAATGCCTGCCGGTCAAGGTTCT-C--C-A------ACGA-GG
1 CCCCCCGATCGTCGGAA--CCCCAATGCC-GTCGGTC-AGGTTCTCCGACGATGCTCGACGATGG
* * * * *
13908861 TGCCCACAACGAAGAAAAATACGGCACCAACACATGCCC-AGCCCAGTCAT-TGCTGTCGTAACC
62 TGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGTGCTGCCGCAACC
* *
13908924 CTCGATCCGATCCTGA-CTTAG-CTGGG-A--AACTCCGTATGCTTAGAAC--GG-ATG-AC-CC
125 CTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-ACTGGGAATGAACTCC
* * * * * *
13908979 GT-TGCCTGAGTCAACCCACAAAACGAGCGTACGGGTGTTTAGCCGGCCAGAGGGGCGGGATGTG
188 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTG
* * * * * * * *
13909043 TAAGCCAGGGATCCGACGAGTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTCGATCC
253 CAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCC
* *
13909108 AATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGCAACGAGCGGGC-GG
318 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
13909172 GC-GGCTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGAG-A
383 GCGGGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTA
* * * * * *
13909235 GATGGGCTTAGACACATCTTCATATTTCTGCATGCCGATGCCTTTTTTATGGCTTTTAAATTCAT
446 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
13909300 ACAATGGTCCCTTAAGTCTTCACGTGAAGTTTTATGGCAA-A-GACTCATTTTCTATTTTTCACG
511 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * *
13909363 ATTTTCAAAACGTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTCGAAGAATTTTTGGCCCCAAA
576 ATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGAAGTTTTGGCCCCAAA
* * * *
13909428 CTTGGTAGATGTGATCATTGTATTTTTTTTGGCATTCACAAAAAAATTCAGCTAAAAACTCGATA
640 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-A
*
13909493 -TGTACAAGTTTTTGTGACCATTTGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTGG
704 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
13909556 TAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
769 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
13909621 TAGGGGGCCAATATAAGGCCCAAGTACCAGCACGCATCGCACACCCCCCGG-
834 TAGGGGGCCAATATAAGGCCCAAGTACCAGCACACATCGCACACCCCCCGGC
* *
13909672 CCCCCCGATCGTCGGAACCGCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-GACGATGGTGC
* * * * *
13909737 CCCGACGAAGAAAAGTGCGGCACCAGCACATGCCTGAGCCCAGCATGTGGTGCCACAACCCTGGG
65 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
13909802 TCCGGTCTGATGTTCGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCC
130 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
13909867 TAAGTCAACCCACGAAATGAGCGTGCAGGTGATCAGCCAGCCAGAGGGGCAGGATGTGCAAGCCA
195 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCA
* * * * * * *
13909932 GGGATTGGTTGGGTCCACATCTGCGTGTTGTCGATCCTATTGCCGCAACCCTTGGTCCGATCTGA
260 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCGATCTGA
*
13909997 TCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGTCAGGCGG
325 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG---GGCGG
* * * *
13910062 GCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGTGTGGGAGGTGGG
387 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
13910127 CTTAGACACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATG
452 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
13910192 GTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
517 GTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
* * * **
13910257 AAAACTATTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGGGTTTTGGCCCCAAACTTGGT
582 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGAAGTTTTGGCCCCAAACTTGGT
* * *
13910322 AGATGTGATCCTTGTATTTTTGTTGGTATGCAC-AAAAAATTCAGCTAAAAACCCGATA-TGTAC
646 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTAC
* *
13910385 AAGATTTTGTGACCATTAGAAAAAAGTG-CCCCATTTCAGACACTTTAATGGCTACTCGCAGCAA
710 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
13910449 AGCTGTAAAATCTCAAATGCTCTTTAAACGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
775 ACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
13910514 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCCCCCGG-
840 GCCAATATAAGGCCCAAGTACCAGCACACATCGCACACCCCCCGGC
* * * * *
13910559 -CCCCCGATCGTCTGAACCCCAATGCCGCCGGTTAGGTTCTCCGATGATGCTCCAACGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTGC
* * * * * *
13910623 CCCGATGAAGAAAAGTGCAGCAGCAGCACATGCCCGAGTCTAGCATGTGCTGCCGCAACCCTCGG
65 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
13910688 TCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
130 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * *
13910753 GAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGCC-GACCAGATGGGCGGGATGTGAAAGCC
195 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAG-CCAGAGGGGCGGGATGTGCAAGCC
* * * * * * * *
13910817 -GAGCATCGATTGGGTCCCCCTCTACGTGTTGCCGATCCTGCCGCC-TAACCCTTGGTCC-AGTC
259 AG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCGA-TC
* *
13910879 CGATCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGG
322 TGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG
* * * * * * *
13910943 GCGGGTGGGCACTACGTCGACTAAAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGG
383 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
13911008 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
448 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
13911073 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCATGAT
513 AATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * *
13911138 TTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGGCCCCAAACT
578 TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAGAAGTTTTGGCCCCAAACT
*
13911203 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTG
642 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
13911268 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
707 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
13911333 CAAACCTATAAAATCTCAAATGCTCCTT-AAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATA
772 CAAACCTATAAAATCTCAAATGCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATA
*
13911397 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACCCCCCCGGC
836 GGGGGCCAATATAAGGCCCAAGTACCAG-------CACACATC----GC--ACA-CCCCCCGGC
* * **
13911461 CCCCCCGATCGTCGGAACCCCATTGCCGTCGGTCAGGTTCTCC-AGTGATGCTCCGGTGATGGTG
1 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCT-CGACGATGGTG
* ** * * * *
13911525 CCTCGGTGAAGAAAAATGTGGCACCAGTACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCA
64 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
13911590 GTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGC
129 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * ** * *
13911655 CTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCCAGCC
194 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCC
* * * * * * * *
13911720 GGGGATTGATCGGGTCCCCCTCTGCGTGATGCCGATCCTGCTGCCGCAACACTCGGTCCGGTCTG
259 AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCGATCTG
* * * * *
13911785 ATCTTAGATTGGGAATGAACTCCGCATGCCTAAGTCGACCGACGAAAGAATCGAGCGGCCGGGTG
324 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGG--GCG-G
* * *
13911850 GGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
382 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
13911915 GTTGGTTTAGGCACATCTTCAAAGTTCTGCGTGCCAATGCCATTTTTATTGCTTGTAAATTCATA
447 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
13911980 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-A
512 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * * *
13912044 ATTTCAAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTCAGAA-AATGTTTTGGCCCCAAA
577 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAGAA-GTTTTGGCCCCAAA
* * *
13912108 CTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
640 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
13912173 TGTACAAGATTT
705 TGTACAAGATTT
13912185 CGCTGGTTAG
Statistics
Matches: 2945, Mismatches: 335, Indels: 191
0.85 0.10 0.06
Matches are distributed among these distances:
861 7 0.00
862 7 0.00
863 8 0.00
864 10 0.00
865 15 0.01
866 4 0.00
868 3 0.00
869 4 0.00
871 1 0.00
872 45 0.02
873 34 0.01
874 5 0.00
875 1 0.00
876 2 0.00
877 25 0.01
878 7 0.00
879 9 0.00
880 38 0.01
881 21 0.01
882 201 0.07
883 37 0.01
884 10 0.00
885 431 0.15
886 491 0.17
887 625 0.21
888 111 0.04
889 2 0.00
890 3 0.00
891 2 0.00
892 15 0.01
893 2 0.00
894 8 0.00
895 12 0.00
896 38 0.01
897 30 0.01
898 1 0.00
900 3 0.00
901 8 0.00
902 1 0.00
903 264 0.09
904 63 0.02
905 11 0.00
906 16 0.01
907 130 0.04
908 183 0.06
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCAG
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTTGGTCCGATCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAGAAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGCCCAAGTACCAGCACACATCGCACACCCCCCGGC
Found at i:13910728 original size:26 final size:26
Alignment explanation
Indices: 13910699--13910751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13910689 CCGGTCCGAT
13910699 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
13910725 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
13910751 C
1 C
13910752 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:13911653 original size:26 final size:26
Alignment explanation
Indices: 13911602--13911654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13911592 CTGGTCCGAT
**
13911602 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13911628 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13911654 C
1 C
13911655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13912290 original size:17 final size:17
Alignment explanation
Indices: 13912246--13912290 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
13912236 AAATGCAGCA
*
13912246 CCAGCACATGCCCGAGC
1 CCAGCACTTGCCCGAGC
*
13912263 CCAGCATTTGCCCGAGC
1 CCAGCACTTGCCCGAGC
13912280 CCAGCACTTGC
1 CCAGCACTTGC
13912291 TGCCGCAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.13
Consensus pattern (17 bp):
CCAGCACTTGCCCGAGC
Found at i:13912900 original size:26 final size:26
Alignment explanation
Indices: 13912864--13912916 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13912854 CTAGTTCAAT
*
13912864 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13912890 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13912916 C
1 C
13912917 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13913803 original size:26 final size:26
Alignment explanation
Indices: 13913767--13913819 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13913757 CTGGTCCGAT
*
13913767 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13913793 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13913819 C
1 C
13913820 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13914270 original size:903 final size:901
Alignment explanation
Indices: 13912473--13915630 Score: 4449
Period size: 903 Copynumber: 3.5 Consensus size: 901
13912463 CTGCCGATCA
* * * * * *
13912473 AAACTTCGTAGATGTGATCCTTGAATTTTTGTCGGCATGCACAAAAAAAATTCAACCAAAAACTC
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTC
* *
13912538 GAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
65 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
13912603 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
130 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * * *
13912668 GGATAGGGAGCCAATATAAGAGCCAAGTACCAG----CA-C-C-CA-C-----CGCACACCCCCC
195 GGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
13912720 CAGCCCCCCCGATCTCCGG-ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
260 C-GACCCCCCGATCGCCGGAACCCCAACGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATG
* *
13912784 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCC
324 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** * *
13912849 TCTGTCTAGTTCAATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGT
389 TCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCGGTATGCTTAGACTGGGAATGAACTCCGT
* * * * ** * * * ** * *
13912913 ATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGTGCTTAGCCGACCAAAAGGGCGGGACGTGCA
453 ATGCCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCCGA-CAGAGGGGTAGGATGAGCA
* * * * ** * *
13912978 AGTCGGGGATCGACCAGGTCCCCCTCTGCGTGCTATCGAT-CTGGCTACCGCAACCCTCGATCTG
517 AGCCTGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTACTGCAACCCTCGGTCTG
* ** * * * *
13913042 GTCCGATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGACATAACGAGCGGTCGTGT
581 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC
* * * * *
13913107 GGGCGGGCGGGCACTACGGCGACCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
646 GGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTA
* * **
13913172 GGTGGGTTTAGGCACATCTTCATATTTTTGTGTGAAAATGCCATTTTTATGGCTTGTAAATTCAT
711 GGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
13913237 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCACG
776 ACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * **
13913302 ATTTTTGAAATTTTTTCCGGTTTGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGCCCC
841 ATTTTTGAAA-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * * * *
13913364 AAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAGAAAATTTAGCTAAACACTCG
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13913429 AAGTGTACAAGATGTTGTGACCATTT-AAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTAC
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * **
13913493 TGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGTGTTTGAGTTCTTGAGGTTTGATGAG
130 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
13913558 GGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
195 GGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
13913623 CGACCCCTCCGATCGCCGGAACCCCAACGCCGCCGGTCAGGTTCTTCGACGATGCTCTGGCAATG
260 CGACCCC-CCGATCGCCGGAACCCCAACGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATG
* * * * *
13913688 GTGCCCCGACGAAGAAAAATGCGGCACCTGTACATGCCCGA-CCCAGCAAGTGCTGTCGTAACCC
324 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* *
13913752 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGATTGGGAATGAACTCCGTA
389 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTA
*
13913817 TGCCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCCAGACAGAGGGGTAGGATGCGCAA
454 TGCCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCC-GACAGAGGGGTAGGATGAGCAA
* * * * *
13913882 GCCTAGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGT
518 GCCTGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGT
* *
13913947 CCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACAAAACGAGCGGGCGGGCGG
583 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGG
* * * *
13914012 GCGGGCGAGCACTATGTTGGCTAGAGAGACGGGATGCGCAACCCGTGGATCAATAGGGTGGTAGG
648 GCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGG
* *
13914077 TGGGTTTAGGCAGATCTTCATATTTCTGAGTGCCAATGCCATTTTGATGGCTTGTAAATTCATAC
713 TGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
13914142 AATGGTCCCTTAAGCCTTTAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
778 AATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** * * * * *
13914207 TTTTGAAATGTTTTGCAATCCGGGAATTTTTAAAATTTTTTCGAAAGTAGTTTTGGACCC
843 TTTTGAAAT-TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * *
13914267 AAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCAGGCACAAAAAAATTCAGCTAAAAACTCG
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
13914332 AAGTGTACGAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACT
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
13914397 GGCAGCAAACCTGTAAAATCTCAATTGCTCTTT-AGGGGGGGTGAGTTCTCGAGGTTTGATGAGG
131 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
13914461 GATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
196 GATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * *
13914526 AACCCCCCGATCGTCGGAACCCCAACGCCGTCTGTCAGGTTTTTCGACGATGCTCCGGCGATGGT
261 GACCCCCCGATCGCCGGAACCCCAACGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
* *
13914591 GCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
326 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** * *
13914656 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATG
391 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
13914721 CCTCAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGTAGGATGAGCAAGC
456 CCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCC-GACAGAGGGGTAGGATGAGCAAGC
* * * *
13914786 CTGGGACCGGCCGGGTCCCCCTTTGTGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTAGTCC
520 CTGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCC
* *
13914851 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGT
585 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGC
* *
13914916 GGGTGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTTGGTG
650 GGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTG
13914981 GGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
715 GGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
13915046 TGGTCCCTTAAGCGTTCAAGTGGACTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTT
780 TGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
13915111 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAATTTTGGCCCC
845 TTGAAA-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* *
13915169 AAACATGGTAGACGTGA-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
1 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
13915233 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGG-TACT
66 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
13915297 GGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCAAGGTTTGATAAGG
131 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * * *
13915362 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGTACATCATGTGCGCACA-CCCCCT
196 GATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * ** **
13915426 GGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTC-TCTGGTGATGCTCCAACGATGG
261 GACCCCCCGATCGCCGGAACCCCAACGCCGTCGGTCAGGTTCTTC-GACGATGCTCCGGCGATGG
* * * * * *
13915490 TGCCCTG-CGAAGAAAAATGTGGCACCAGCACATGCGCGAGCCCAGCATGTCCTTCCGTAACCCT
325 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
** * *
13915554 CAATCCGGTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACT-GGAATGAACTTCGTAT
390 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTAT
*
13915618 GCCTAAGTCAACC
455 GCCTAAGTAAACC
13915631 CTCGGTCCGG
Statistics
Matches: 2017, Mismatches: 225, Indels: 43
0.88 0.10 0.02
Matches are distributed among these distances:
889 6 0.00
890 161 0.08
891 37 0.02
894 2 0.00
895 1 0.00
896 1 0.00
897 2 0.00
898 26 0.01
899 96 0.05
900 96 0.05
901 271 0.13
902 608 0.30
903 624 0.31
904 86 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
GATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GACCCCCCGATCGCCGGAACCCCAACGCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGT
GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAGCCGACAGAGGGGTAGGATGAGCAAGCC
TGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCCA
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCG
GGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
Found at i:13915611 original size:25 final size:26
Alignment explanation
Indices: 13915568--13915619 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
13915558 CCGGTCTGAT
13915568 CTTAGACTGGGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
13915594 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
13915619 C
1 C
13915620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:13915679 original size:79 final size:80
Alignment explanation
Indices: 13915548--13915711 Score: 267
Period size: 79 Copynumber: 2.1 Consensus size: 80
13915538 GTCCTTCCGT
**
13915548 AACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACT-GGAATGAACT
1 AACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* *
13915612 TCGTATGCCTAAGTC
66 CCGTATGCCTAAGAC
**
13915627 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
1 AACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
13915692 CCGTATGCCTAAGAC
66 CCGTATGCCTAAGAC
13915707 AACCC
1 AACCC
13915712 ACGAAACGAG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 50 0.64
80 28 0.36
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
AACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGAC
Found at i:13915683 original size:26 final size:26
Alignment explanation
Indices: 13915647--13915699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13915637 CCGGTCTGAT
13915647 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13915673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13915699 C
1 C
13915700 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13916595 original size:25 final size:26
Alignment explanation
Indices: 13916550--13916601 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
13916540 CTGATCCGAT
*
13916550 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13916576 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13916601 C
1 C
13916602 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13917330 original size:26 final size:26
Alignment explanation
Indices: 13917280--13917332 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13917270 CCGATCCAAT
*
13917280 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
*
13917306 CTTAGATTGGGAATGAACC-CTGTATG
1 CTTAGACTGGGAATGAACCTC-GTATG
13917332 C
1 C
13917333 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCGTATG
Found at i:13918607 original size:899 final size:888
Alignment explanation
Indices: 13916576--13919044 Score: 3398
Period size: 899 Copynumber: 2.8 Consensus size: 888
13916566 GCTCCGTATG
* * * *
13916576 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGTAGACGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAACGAGCAGGCGGGCGGGCGGG
* *
13916640 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
13916705 GTACATCTTCAAATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
130 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
13916770 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* * *
13916835 TTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
260 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACA
*
13916900 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
13916965 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAATGGCTACTGGCAGTAAACCTGTA
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTAATGGCTACTGGCAGCAAACCTGTA
* * * * * *
13917030 AAATATCAAATGGTCTTTAAGGAGATGTGAGTTCAT-GAGGTTTGATGAGGGATAGGTGCCCAAT
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
13917094 ATAAGGGCCAGGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
519 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC
** * ** * * * * * *
13917159 CAAAACCCCATTATCATCGGTCAGGTTCTTCGGTGATGCTCCAACGATGGTGAAGAAAATTATGG
584 CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATACTCCAACGATGGTGAAGAAAAATACGG
* *
13917224 CACCAACACATGCCCGAGCCTAGCATGTGCTGGCGCAACCCTTGGTCCGATCCAATCTTAGACTG
649 CACCAACACATGCCCGAGCCCAGCATGTGCTAGCGCAACCCTTGGTCCGATCCAATCTTAGACTG
* * **
13917289 GGAATGAACTTCGTATGCTTAGATTGGGAATGAACCCTGTATGCCTAAGTCAACCAACGAAACGA
714 GGAAAGAACTCCGTATGCTTAGACGGGGAATGAACCCTGTATGCCTAAGTCAACCAACGAAACGA
* * * * *
13917354 ACGTGCGGGTGGTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCAAGGATCCGTCGGTCCCCCTC
779 ACGAGCAGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCCGTCGGTCCCCCTC
*
13917419 TACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCTGGTCCAAT
844 TACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCCAAT
* * * *
13917464 CTTAGATTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAACGAGCAGGCGGGC--G-G-G
* *
13917529 CGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGT
61 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
13917594 TTAGGCACATCTTCATATTTCTGCTTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
126 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
13917659 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTATTTTCTATTTTTCACAATTTTTG
191 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
*
13917724 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
256 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
** * * *
13917789 GATGTGATCCTTTTATGTTTT-TTGGCACGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACA
321 GACATGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
13917853 AGATTTTGTGACCATTTCAAAAAAGTGTCCCAATTTCAGACATTTTAATGGCTTCTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA-TTTAATGGCTACTGGCAGCAAA
* *
13917918 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGG
449 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
13917983 CCAGTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCG
514 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * ** *
13918048 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATAACTCGGTGATGGTTCCCCGGTG
579 ATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGAT-ACTC---CAACGAT----GGTG
** * * * *
13918113 AAGAAAAATACGGCACCAACACATGTTCGAGCCCAGCATGTGCTATCGTAACCCTTGGTCGGGTC
636 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTAGCGCAACCCTTGGTCCGATC
** *
13918178 TGATCTTAGTCTGGGAAAGAACTCCGTATGCTTAGACGGGGAATGAACTCC-GTATGCCTAAGTC
701 CAATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACGGGGAATGAAC-CCTGTATGCCTAAGTC
* * * * * ***
13918242 AACCAATTGAAATGAGCGAGCAGGTGCTTAGCCGGCCAGAGGGG-GGGATGTGCAAGCTGGGGAT
765 AACCAA-CGAAACGAACGAGCAGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGAT
* * * * * **
13918306 -CGATCGGGTCCCCCTTTGCGTGTTGTCGATCCTACTGTCGTAACCCTCGGTCTGGT-CAGAT
829 CCG-TC-GGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCCA-AT
* *
13918367 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACAAAGCGAGCAGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA-CGAGCAGGCGGGCGGGCGGG
** * * *
13918432 CACTACATCAGCCAGTGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
13918497 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGTTCCC
130 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
13918562 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* * * ** * *
13918627 TTTTTGTGGTTCGAGATTTTTTAAAA-TTTTTTGGGAAGAAGTTTTGGCGACAGACTTGGTTGAC
260 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAG-AGTTTTGGCCCCAAACTTGGTAGAC
* * *
13918691 ATAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGAACAAGAT
324 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
13918756 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA-TTTAATGGCTACTGGCAGCAAACCTG
* *
13918821 TAAAATCTCAAATGCTCTTTAA-GGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
453 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
13918885 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCCGGCCCCCCCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* ** * *
13918950 GCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGGCGATGGTACC-CCGA---TGAAGAAAAATG
582 GCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATACT-CCAACGATGGTGAAGAAAAATA
*
13919011 CGGCACCAACTCATGCCCGAGCCCAGCATGTGCT
646 CGGCACCAACACATGCCCGAGCCCAGCATGTGCT
13919045 GTCACAACCC
Statistics
Matches: 1390, Mismatches: 164, Indels: 54
0.86 0.10 0.03
Matches are distributed among these distances:
888 49 0.04
889 42 0.03
891 1 0.00
892 1 0.00
893 336 0.24
894 172 0.12
895 4 0.00
898 100 0.07
899 417 0.30
900 1 0.00
901 3 0.00
902 141 0.10
903 123 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAACGAGCAGGCGGGCGGGCGGGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
TTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCG
GAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATACTCCAACGATGGTGAAGAAAAATACGGCA
CCAACACATGCCCGAGCCCAGCATGTGCTAGCGCAACCCTTGGTCCGATCCAATCTTAGACTGGG
AAAGAACTCCGTATGCTTAGACGGGGAATGAACCCTGTATGCCTAAGTCAACCAACGAAACGAAC
GAGCAGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCCGTCGGTCCCCCTCTA
CGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCCAAT
Found at i:13923187 original size:26 final size:26
Alignment explanation
Indices: 13923149--13923201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13923139 CCAATCCGAT
* *
13923149 CTTAGATTGGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
13923175 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
13923201 C
1 C
13923202 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:13923415 original size:686 final size:695
Alignment explanation
Indices: 13922068--13923464 Score: 1945
Period size: 686 Copynumber: 2.0 Consensus size: 695
13922058 CCCAAACTTG
*
13922068 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCGAAAAACTCGAAGTGTA
1 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTA
* * * *
13922133 CAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCA
66 CAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* * *
13922198 AACCTGTAAAATCTCAATTGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGG
*
13922263 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTACGCGCACCCCCCGGCCCCTC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTA-GCGCA-CCACC-GCCCCT-
* * * * * * *
13922328 CGTTCGTCGGAACTCTAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATTGTGCCCTGA
257 CGCTCGACGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGA--CT----CG--TGTGCCCCGA
* * * **
13922393 CGAAGAAAAATACAGCACGAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGA
314 CGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAA
* * *
13922458 TCCGATCTTAGACTGGGAATGAACTCTTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTT
379 TCCGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTAGGAATGAACTCCGTATAACTAAGTC
* * * ** * * *
13922523 AACCCATAAAACAAACGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATT
444 AACCCACAAAACAAACGAGCAGGCGCTCAACCGGCCAAAGGGGCAGGATGCACAAGCCAGGGATC
* * *
13922588 GGTCGGGTCCCCCTTTACGTGCTACCGATCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAC
509 GGTCGGGTCCCCCTTTACGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGATCTGATATTAC
* * * * *
13922653 ACTGGGAATGAACTCCGTATGCCTAAGTTAACCGACGAAATGAACGGGCGGGCAGGCAGGCACTA
574 ACTGGGAATCAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCAGGCAGGCAGGCAATA
* *
13922718 CGCTAGCCAGAGAGACGGGATGCGTAAGCCGTGGAT-CGAT-GGGTGGTAGGTGGGT
639 CGCTAGCCAGAGAGACGGGATGCGCAAGCCATGGATGCGATAGGGTGGTAGGTGGGT
* *
13922773 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTA
1 TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTA
13922838 CAAGATTTTGCGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
66 CAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* * * *
13922902 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAAGG
131 AACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGG
* * *
13922967 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT-GCGCA-GACC-CCCCT-GAC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTAGCGCACCACCGCCCCTCG-C
*
13923028 T-GACGAAACCCCAATGCCGTCGGTCAGGTTCTCCGATGA-T-G-GTGCCCCGACGAAGAAAAAT
260 TCGACGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGACTCGTGTGCCCCGACGAAGAAAAAT
* * *
13923089 ACGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCTGCAACCCTCGGTCCAATCCGATCTTAG
325 ACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAG
* ** *
13923154 ATTGGGAATGAACTCCCTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
390 ACTGGGAATGAACT-CCTATGCTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACAAA
* * * * *
13923219 ACGAGCGAGCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGTATCGGTCGGGT-C
454 ACAAACGAGCAGGCGCTCAACCGGCCAAAGGGGCAGGATGCACAAGCCAGGGATCGGTCGGGTCC
* * * *
13923283 TCCTTCTGCGTGCTACCGATCTTGCTACCGCAACCCTCGATCTGATCTGATATTACACTGGGAAT
519 CCCTT-TACGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGATCTGATATTACACTGGGAAT
*
13923348 CAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCAGGCAGGCGGGCAATACGCTAGCCA
583 CAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCAGGCAGGCAGGCAATACGCTAGCCA
*
13923413 GAGAGATGGGATGCGCAAGCCATGGATGCGATAGGGTGGTAGGTGGGT
648 GAGAGACGGGATGCGCAAGCCATGGATGCGATAGGGTGGTAGGTGGGT
13923461 TTAG
1 TTAG
13923465 GCACATCGTT
Statistics
Matches: 617, Mismatches: 70, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
685 94 0.15
686 230 0.37
687 4 0.01
688 20 0.03
693 1 0.00
696 33 0.05
697 1 0.00
698 5 0.01
700 2 0.00
702 5 0.01
704 142 0.23
705 80 0.13
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (695 bp):
TTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTA
CAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCGAGGTTTGATAAGGGATAAGG
GGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTAGCGCACCACCGCCCCTCGCT
CGACGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGACTCGTGTGCCCCGACGAAGAAAAATA
CAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGA
CTGGGAATGAACTCCTATGCTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACAAAAC
AAACGAGCAGGCGCTCAACCGGCCAAAGGGGCAGGATGCACAAGCCAGGGATCGGTCGGGTCCCC
CTTTACGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGATCTGATATTACACTGGGAATCAA
CTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCAGGCAGGCAGGCAATACGCTAGCCAGAG
AGACGGGATGCGCAAGCCATGGATGCGATAGGGTGGTAGGTGGGT
Found at i:13924103 original size:26 final size:26
Alignment explanation
Indices: 13924067--13924119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13924057 CCAGTCCGAT
*
13924067 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13924093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
13924119 C
1 C
13924120 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:13924891 original size:875 final size:881
Alignment explanation
Indices: 13922774--13925842 Score: 3570
Period size: 875 Copynumber: 3.5 Consensus size: 881
13922764 TAGGTGGGTT
* *
13922774 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
13922839 AAGATTTTGCGACCATTTGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
66 AAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
13922904 -CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAAGGG
131 CCGTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGG
* * * *
13922968 GCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCAGACCCCCCTG----AC-
195 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * *
13923028 -TGAC-GAAACCCCAATGCCGTCGGTCAGGTTCTCC---GA---T-----GATGGTGCCCCGACG
260 ATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACG
* * * *
13923080 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGTATGTGCTGCTGCAACCCTCGGTCCAATC
325 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
* *
13923145 CGATCTTAGATTGGGAATGAACTCCCTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
390 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
13923210 ACCCACGAAACGAGCGA-GCAGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGTATC
455 ACCCACGAAACGAGC-ATGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGAAAACCAGG-ACC
* ** * *
13923274 GGTCGGGTCTCCT-TCTGCGTGCTACCGATCTTGCTACCGCAACCCTCGATCTGATCTGATATTA
518 GGTC-GGTC-CCTCTCTGTGTGCTGTCGATC---CTACTG----CCTCG-TCTG-TC-GAT-CTA
* * * *
13923338 CACTGGGAATCAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCAGGCAGGCGGGCAAT
570 -AC-GGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACT
* *
13923403 ACG-CTAGCCAGAGAGATGGGATGCGCAAGCCATGGATGC-GATAGGGTGGTAGGTGGGTTTAGG
633 ACGTC-GGCCAGAGAGAAGGGATGCGCAAGCCATGGAT-CAGATAGGGTGGTAGGTGGGTTTAGG
** * *
13923466 CACATCGTTCATGATTGGATTCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTC
696 CACATC-TTCAT-ATT-TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
13923531 CCTTAGGCGCTTCACAATGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTTT
758 CCTTAAGC-CTTCAC-GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-CAATTTTT
* * * * *
13923596 GAAACCTTTACAGTTCGGGATTTTTTTAAAATTTTTTTCGAAAGGAGTTTTGGCTCCAAACTTAT
820 GAAACTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTT-GGAAGGACTTTTGGC-CCAAAC-T-T
13923661 GGGGG
880 ---GG
* * *
13923666 TAGACGTCATCTTTGTATTTTTTTTGGCGTCGCACAAAAAAATTCAGCTAGAAAACTCGAAGTGT
1 TAGACGTGATCCTTGTATTTTTTTTGGCAT-GCACAAAAAAATTCAGCTA-AAAACTCGAAGTG-
* * * *
13923731 TACGAAGGAATTTGTTGACCATTTGAAAAAGTGTCCCCATTTCAGATTACTTTAATTGCTACTGG
63 TAC-AA-GATTTTG-TGACCATTTGAAAAAATGTCCCCATTTCAGA-CACTTTAATGGCTACTGG
* *
13923796 CAGCAAACCGTGTAAAATCTTAAA-GCTCTTTGAAGGGGTGTGTAGTT-TTGAGGTTTGGATAAG
124 CAGCAAACCGTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTG-AGTTCTCGAGGTTT-GATAAG
* * * *
13923859 GGATAGGGGGCCAATATAGGGGCCAAGTACAAGCACACATCGCATATCATGTGCGCACACCCCCC
186 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
13923924 GGCCCCCCGATCACTGGAACCCCAATGCCGCCGGTCAGTTTCTCCGGTGATGCTCCGGCGATGGT
251 GGCCCCCCGATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGT
* * * ** *
13923989 GCCCCGATGAAGAAAAATACGGCACCAGCATATGCCCGAGCCTAGCATGTGCTGTTGCAACCCTT
316 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
13924054 GGTCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATG
381 GGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
13924119 CCTAAGTCAACCC-CGAAACGAGCATGCGGGCGCTCATTCGACCAGAGGGGTGGGATGCGTAAAC
446 CCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGAAAAC
*
13924183 CACGGACCGGCCAGGTCCCTCTCTGTGTGCTGTCGATCCTACTG-CT-G-C-GTCGATCT-A-GG
511 CA-GGACCGGTC-GGTCCCTCTCTGTGTGCTGTCGATCCTACTGCCTCGTCTGTCGATCTAACGG
* * * * **
13924242 GAATGAACTTCGTATGCGTAAGTCAACTGACGAAACGAGCGTACGGGCGGGCGGGCACTACGTCG
574 GAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCG
* *
13924307 GCCAGAGAGACGGGATGCGAAAGCCATGGAT-AGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
639 GCCAGAGAGAAGGGATGCGCAAGCCATGGATCAGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
13924371 CATATTTCTGCATGCCAATGCCGTTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTT
704 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
13924436 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGG
769 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAAC-TTTTACGG
* *
13924501 TTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGACCCTAAACTTGG
833 TTCAGGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCC-AAACTTGG
* *
13924551 TAGACGTGATTCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
13924616 AAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTTGGCATC-A
66 AAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAA
*
13924680 ACCGTGTAAAGATCTCAAATGCTCTTT-AGGGGTGTTGAGTCTCTCG-GG-TTGATGAGGGATAG
130 ACCGTGTAAA-ATCTCAAATGCTCTTTAAGGGGTG-TGAGT-TCTCGAGGTTTGATAAGGGATAG
** * * *
13924742 CAGGCC-A-ATAAGGGCCAAGTACCGGCACCCATCGCACA-CATGTGCGCACACCCCTCAGCTCC
192 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CC
* * * *
13924804 CCTGATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTTCGGCGTTGGTGCCCC
256 CCCGATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC
* * * * * **
13924869 GACGAAGAACAATACGGCACCAGCACACGCCCGAGGCCAGCATGTGCTGCCCCAACCCTTGGTTT
321 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
13924934 GGTCCGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGGATGCCTAA
386 AGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ***
13924999 GTCAACCCACGAAACGAGCATGTGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGAAAATTGGGG
451 GTCAACCCACGAAACGAGCATGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGAAAA-CCAGG
* * *
13925064 ACCGGTCGTGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCT
515 ACCGGTCG-GTCCCTCTCTGTGTGCTGTCGATCCTACT---G----CCTC-GTCT-GT-CGATC-
* *
13925129 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGTGGGCGGGCGGGCA
568 TA-AC-GGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAACGGGCGGGCGGGCGGGCA
* * *
13925194 CTACGTCGGCCAGAAAGAAGAGATGCGCAAGCCGTGGATCA-ATAGGGTGGTAGGTGGGTTTAGG
631 CTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCATGGATCAGATAGGGTGGTAGGTGGGTTTAGG
* * * *
13925258 CACATCTTAATATTTCGGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCG
696 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
13925323 TAAGCCTTCACGTGAAGTTTCATGGCAAGACG----A----C------T--C-A-----G-GA-T
761 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACT
* * *
13925364 TTTACGGTTCAGAATTTTTTAAAATTTTTTCGGAAGGACTTTCGGCCCAAAACTTGG
826 TTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGACTTTTGGCCC-AAACTTGG
*
13925421 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
13925486 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTAGCGGCAA
66 AAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
13925551 ACC-TGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGG
130 ACCGTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGG
13925615 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTC
194 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-C
** * * * ** *
13925680 CGATCGGTTGAACCCCAATACCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGA
258 CGATCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
13925745 CAAAGAAGAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGG
323 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
*
13925810 TCTGATCTTAGATTGGGAATGAACTCCGTATGC
388 TCCGATCTTAGATTGGGAATGAACTCCGTATGC
13925843 CTAAGCCAAC
Statistics
Matches: 1893, Mismatches: 208, Indels: 170
0.83 0.09 0.07
Matches are distributed among these distances:
869 21 0.01
870 158 0.08
871 54 0.03
872 2 0.00
873 34 0.02
874 175 0.09
875 208 0.11
876 80 0.04
877 15 0.01
878 37 0.02
879 50 0.03
880 15 0.01
881 3 0.00
882 3 0.00
883 12 0.01
884 21 0.01
885 28 0.01
886 1 0.00
887 2 0.00
888 1 0.00
889 5 0.00
890 20 0.01
891 31 0.02
892 75 0.04
893 26 0.01
894 61 0.03
895 205 0.11
896 8 0.00
897 36 0.02
898 112 0.06
899 48 0.03
900 87 0.05
902 1 0.00
903 3 0.00
904 3 0.00
905 1 0.00
906 4 0.00
907 27 0.01
908 1 0.00
909 2 0.00
910 2 0.00
913 1 0.00
914 5 0.00
916 4 0.00
917 66 0.03
918 139 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (881 bp):
TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCGTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCACTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCATGCGGGCGCTCAATCGGCCAGAGGGGCGGGATGCGAAAACCAGGACCGGT
CGGTCCCTCTCTGTGTGCTGTCGATCCTACTGCCTCGTCTGTCGATCTAACGGGAATGAACTCCG
TATGCCTAAGTCAACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAAG
GGATGCGCAAGCCATGGATCAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTACGGTTCAGGATTTTTT
AAAATTTTTTTGGAAGGACTTTTGGCCCAAACTTGG
Found at i:13924994 original size:26 final size:26
Alignment explanation
Indices: 13924942--13924994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13924932 TTGGTCCGAT
* *
13924942 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGGATG
*
13924968 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAAAGAACTCCGGATG
13924994 C
1 C
13924995 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGGATG
Found at i:13926561 original size:26 final size:26
Alignment explanation
Indices: 13926525--13926577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13926515 CCGGTGTGAT
*
13926525 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
13926551 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13926577 C
1 C
13926578 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13929198 original size:26 final size:26
Alignment explanation
Indices: 13929162--13929211 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13929152 CTGATTTGAT
13929162 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
13929188 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
13929212 CGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13930092 original size:26 final size:26
Alignment explanation
Indices: 13930063--13930115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13930053 CTGGTCCGAT
*
13930063 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13930089 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13930115 C
1 C
13930116 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13931009 original size:26 final size:25
Alignment explanation
Indices: 13930965--13931013 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
13930955 ATCTGATCTC
13930965 AGACTGGGATGAACACCGTATGCTT
1 AGACTGGGATGAACACCGTATGCTT
*
13930990 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGG-ATGAACACCGTATGC
13931014 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (25 bp):
AGACTGGGATGAACACCGTATGCTT
Done.