Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 87 of 190
Found at i:13931247 original size:899 final size:898
Alignment explanation
Indices: 13925787--13933946 Score: 10812
Period size: 901 Copynumber: 9.2 Consensus size: 898
13925777 GCCCAGCATG
** *
13925787 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
13925852 CTGACGAAACAAGC--A--GGC--G-GGCGGGCACTACGCCGGCTAGAGAGACGGGATGCATAAG
65 CCGACGAAACGAGCGAACGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
13925910 CTGTGGATCGGTAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
13925975 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
13926040 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTCTAAAATTTTTTC
260 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
13926105 GGAAGGAATTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCGTGCACAAAAC
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
13926170 AATTCAGCTAAAAACTCGAACTGAACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCA
390 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
13926234 GACACTTTAATGGCTGCTGGTAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * **
13926299 TCTCAACGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
520 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * *
13926364 ATGTGCGCACACCCCCCGACCCCTCCGATCACCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGG
585 ATGT--GCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * * * *
13926429 CGATGCTCCGACGATGGTGCCTCAACAAAGAAAAATACGGCACCAACACATGCCTGAGCCTAGCA
647 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* * * * *
13926494 TGTGCTGCCGCAACCCTTGGTCCGGTGTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATT
712 TGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
13926559 GGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGATCAGTCGGCCAGA
777 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* ** * * * *
13926624 GGGGCGGGATGCGTAAATCGAGGATCGACCGAGTCCCCTTCTGCGTGCTGCCGATCC
842 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* *
13926681 TGCTGCCATAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC-AATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13926745 ---TCG-AA-GA---AACGAGC--G-GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCACAAG
65 CCGACGAAACGAGCGAACGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
13926799 CCGTGGATCAATAAGGTGGCAGGTGGGTTTGGGCACATCTTCATATTTCTGCTTGCC-ATCACCA
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT-GCCA
* *
13926863 TTTTTTTGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
13926928 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCTAGA-TTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
13926992 CGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TATGG-ATGCACAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGT-TGGCATGCACAA
13927055 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
13927120 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTC
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
13927185 AGTTCTCAAGGATTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
13927250 ATCAAGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
582 ATC-A-TGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** ** * *
13927315 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAATCCCAG
645 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* *
13927380 CATGTGTTGCTGCAA-CC-C--T-C-A---G-TC-----C---G---G---TCCG-AT-CTTAGA
710 CATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* **
13927419 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGTGCTCAGCCGGCCA
775 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * *
13927484 GAGGGGCGGAATGCGCAAGCCGGGGATC-ACCGGG-CCCCCTATACATGCTGTCAATCC
840 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * * * *
13927541 TGCTACTGCAACCCTCAGTCCAGTGCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * **
13927606 CTGACGAAACGAGCGAGCGGGCGAGCGGGCGGGCGGGCACTATGCTGGCTAGAGAGATGGGATAT
65 CCGACGAAACGAGCGAAC--G-G-GCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * **
13927671 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTACATCCCACC
125 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
13927735 ACCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
190 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
13927800 AGACGACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATT
255 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
*
13927865 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
320 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13927930 AAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAATAGTGTCCCCA
385 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
13927995 TTTTAGACACTTTAATGGCTACCGGCAG-----C---AAAATATCAAATGCTCTTTAAGGGGGTG
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
13928052 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
13928117 ACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTC
580 ACATCATGT--GCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * ** * * *
13928182 TTCGGTGATGCTCCGGCGATGGTACGTCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
642 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
*
13928247 CAGCATGTGCTGCTGCAACCCTCGGTCC-A---G----T---C------TG------G--T-CTT
707 CAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
13928286 AGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGT-CTGGGTGGTCAGCCG
772 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGTGCTCAGCCG
* * * * * *
13928350 GCCAGAAGGGTGAGATGCGCAAGTCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTATCGATCC
836 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
13928413 TACTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAATTCGCATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * **
13928478 CCGACGAAACGAGCGGGCGGGCGGTCGAGCGGGCACTACGTCGGCCAGAGAGAAAGGATGCGCAA
65 CCGACGAAACGAGCGAACGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13928543 GGCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
13928608 TTTTTATGGCTTTTAAATTCATACAATGGCCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13928673 GACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGTGGTTCCGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
13928738 CAGAAGGAGTTTTGGACCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCATGCATAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
13928803 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13928868 AGACACTTTAATGGCTACTGAG-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 AGACACTTTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
13928932 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAACACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
13928997 TCATGTGCACACACCCCCCATCGGCCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCT
583 TCATGTG--CACA-CCCCC--CGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * * ***
13929062 CCGACGATGCTCCGACGACGGTGCCCCGGCGAAGAAAAATACTATACCAACACATGCCCGAGCCC
643 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * * *
13929127 AGCATGTGCTGCCGCAACACTCAGTCTGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTA
708 AGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
13929192 GACTGGGAATGAACTCCATACGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCTGGC
773 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * * * * *
13929257 CAGAGGGGCGGGATGCGTAACCCGAGGATCG---GTGGTCCCCCACTGTGTGCTGCCGATCC
838 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG-GGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * *
13929316 TACTGCTGCAACCCTCGGTCCGATCCAATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
13929381 CCGACGAAACGAGC-AAGCGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
65 CCGACGAAACGAGCGAA-CGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
***
13929445 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
13929510 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
13929575 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTCGGTTCGGGATTTTTTAAAATTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTG-CGGTTCGGGATTTTTTAAAATTTT
* * * *
13929640 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAA
322 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
13929705 AAGAATTTAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
13929770 CCGGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
13929835 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
13929900 AACATGTGCGCACACCCCCCGGCCCCCCCG-TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTT
582 ATCATGT--GCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
13929964 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
644 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * *
13930029 GCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
709 GCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** *
13930094 ACTAGGAATGAACTTCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGTGCTCTGCCGGCC
774 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * ** *
13930159 AGA-AGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCG
839 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * *
13930218 TGCTATCACAACCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTGCCACAACCCTCG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * ** *
13930283 CCGACAAAACGAGCGGGCGGGCGGGCGAGGGGGCACTACATCGGCCAGAGAGATGGGATGCGCAA
65 CCGACGAAACGAGCGAACGGGCGGGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
13930348 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
13930413 TGTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
13930478 GACTCGTTTTTTATTTTTCACGATTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
13930543 TGGAAGGAGTTTTGGCCACAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
13930608 AAATACAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13930673 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
13930738 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-GACACCCATCGCACA
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACA
*
13930802 TCCTGTGCACACCCCCCGGCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
583 TCATGTGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* ** *
13930866 GGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCAACACCAACACATGCTCGAGCCCAGC
647 TGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* ** * * *
13930930 ATGTTCTGCCATAACCCTCGGTCCAATCTGATCTCAGACTGGG-ATGAACACCGTATGCTTAGAC
711 ATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
13930994 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* * * * * *
13931059 AGGGGAGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTATGAGAGCTATCGATCC
841 AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** *
13931117 TGCTACCACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
13931182 CCGACGAAACGAGCGAACGGGCGGGCTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGAACGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
13931247 GCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTCCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
13931312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
13931377 GACTCGTTTTCTATTTCTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
13931442 CGGAAGGATTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
13931506 AAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAATGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
13931571 AGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATCCTCTTTAATGAGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
13931635 TTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
13931700 CATGTGCGCACACCCCCCGGCCCCCACGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
584 CATGT--GCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* *
13931765 GTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGC
646 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
*
13931830 ATGTGCTGCCGCAACCCTCAGTCCGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
711 ATGTGCTGCCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
*
13931894 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCA
775 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
** * *
13931959 GA-GGGCGGGATGCGCAAGCTTGGGATCTG-TCGAGTCCCCCTCTGCGTGCTGTCGATCC
840 GAGGGGCGGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** ** * *
13932017 TACTGCTGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13932082 CTGACGAAAC-A---AGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGAACGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
13932143 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
13932208 TTTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13932273 GACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
13932338 TGGAAGGATTTTTGGCCCCAACCTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCAC-AAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
13932402 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
13932467 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
13932532 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * * *
13932597 TATGTGGGCACACCCCTGCCCCCC-AACGTCAGAACCCCAGTGCCG-CTGGTCAGGTTCTCC---
584 CATGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGT
* ** * * * *
13932657 ---G----G-CGATAGTGCCCCGGTGAAGAAAAAAGTGGTACCAACACATGCCCGAGCCCATCAT
648 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * * * * *
13932714 TTGCTACCGTAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
713 GTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
13932779 GGATTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
778 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* *** * *
13932844 GGGCGGGATGCGCAAGTCGGGGATCGGTTGGGTACCCCT-TGGCGTGCTGCCGATCC
843 GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-GCGTGCTGTCGATCC
* * *
13932900 TGCTGCCACAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
13932965 CTGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGAACGGGCGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
13933030 GCCGTTGATCAATAGGGTGGTAGGTTGGTTTAGGCTCATCTTCATATTTCTACATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
13933095 TTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
13933160 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTA
259 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT-
* *
13933225 T-GGAAGGAGTTTTGGCCCCAAA-TGTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAA
323 TCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACA
* *
13933288 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTGGAAAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
13933353 TTCAGACACTTTAATGGCTACTGGCAGC-AACATTTTAAAATCTCAAATGCTCTTTAAGGGTGG-
451 TTCAGACACTTTAATGGCTACTGGCAGCAAAC-CTGTAAAATCTCAAATGCTCTTTAAGGG-GGT
**
13933416 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-C--TATAAGGGCCATTTACCAGCACCCATCG
514 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
13933478 CACATTATGTGCGTACACCCCCTGGCCCCCCCG-TTGTCGGAACCCCAATGCCGTCAGTCAGGTT
579 CACATCATGTGC--ACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* **
13933542 CTCCGGTGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGCAACACCAACACATGCCCGAGC
641 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * * * *
13933607 CCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCCTAGACTGGGAATGAACTTCGTATGCT
706 CCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
13933672 TAGACTGGGAAAGAACTACGTATGCCTAAGTCAACCCACGAAATGATCGTGCGGGTGCTCAGCCG
771 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * ** * * * * *
13933737 GCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCTAGGCCCCCCTCTACGTGTTGTTGATCT
836 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * * *
13933800 TGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACAGGGAAAGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTC-GTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13933865 CCGACAAAACGAGCGAGC-GG-GTG-GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
65 CCGACGAAACGAGCGAACGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
13933927 CCGTGGATTGATAGGGTGGT
130 CCGTGGATCGATAGGGTGGT
13933947 TTAGGCCCTC
Statistics
Matches: 6436, Mismatches: 678, Indels: 302
0.87 0.09 0.04
Matches are distributed among these distances:
860 58 0.01
861 18 0.00
862 88 0.01
863 2 0.00
864 5 0.00
865 2 0.00
866 2 0.00
867 4 0.00
868 62 0.01
869 402 0.06
870 198 0.03
871 8 0.00
872 88 0.01
873 3 0.00
874 4 0.00
875 5 0.00
876 141 0.02
877 310 0.05
878 7 0.00
879 108 0.02
880 8 0.00
882 167 0.03
883 114 0.02
884 2 0.00
886 38 0.01
887 279 0.04
888 232 0.04
889 542 0.08
890 7 0.00
891 2 0.00
892 1 0.00
893 41 0.01
894 45 0.01
895 16 0.00
896 413 0.06
897 229 0.04
898 186 0.03
899 538 0.08
900 537 0.08
901 571 0.09
902 293 0.05
903 298 0.05
904 276 0.04
905 84 0.01
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
TGCTGCCACAACCCTCGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGAACGGGCGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
Found at i:13931891 original size:26 final size:26
Alignment explanation
Indices: 13931862--13931914 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13931852 CCGATTCGAT
13931862 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13931888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13931914 C
1 C
13931915 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13932773 original size:26 final size:26
Alignment explanation
Indices: 13932744--13932796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13932734 ACGGTCCGAT
13932744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13932770 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13932796 C
1 C
13932797 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13933682 original size:26 final size:26
Alignment explanation
Indices: 13933646--13933696 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13933636 GGTCCGATCC
* *
13933646 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAAAGAACTACGTATGCT
13933672 TAGACTGGGAAAGAACTACGTATGC
1 TAGACTGGGAAAGAACTACGTATGC
13933697 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTACGTATGCT
Found at i:13934502 original size:26 final size:26
Alignment explanation
Indices: 13934466--13934518 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13934456 CCAGTCCGAT
*
13934466 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13934492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13934518 C
1 C
13934519 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13935405 original size:26 final size:26
Alignment explanation
Indices: 13935376--13935428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13935366 CTAGTCCGAT
*
13935376 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13935402 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13935428 C
1 C
13935429 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13936485 original size:884 final size:887
Alignment explanation
Indices: 13933946--13937369 Score: 4689
Period size: 880 Copynumber: 3.8 Consensus size: 887
13933936 GATAGGGTGG
* *
13933946 TTTAGGCCCTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
1 TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* ** *
13934011 CTTTTTACGATTCGGGATTTTCTAAAATTTTCTCTAAAGGAGTTTTGGCCCCAAACTTGGTAGAT
66 CTTTTTACGATTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
13934076 GTGATCCTTGTGTTTTTGTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
131 GTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
13934141 TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
196 TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
13934206 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAA
261 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGTTTGATGAGGGATAGGGGGCCAA
* *
13934271 TATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGGCCC-CATCGAT
325 TATAA-GG---AG----AG-ACCCATCACACATCATGTGCG-ACACCCCCCCGGCCCTC-CCGAT
* * *
13934334 CACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGCCAAA
379 CACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* *
13934399 GAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGATCCAGTCCG
444 GAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCA
* *
13934464 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAG
509 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** *
13934529 CCACGAAACAAGCGTGCGGGCGCTCGGCCGGCCAGAGGGGCGGGATGCACCAGTTGGGGATCGAT
574 CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
* * **
13934594 CGGGTTCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACT
639 CGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACT
*
13934659 AGGG-ATGAACTCCGTATGCCTAAGCCAACCGAAT-AAACGAGCGGGCAGGCGGGCGAGCAGGCA
704 -GGGAATGAACTCCGTATGCCTAAGCCAACCG-ATGAAACGA-C---CGGGCGGGCG-G-A-G--
* *
13934722 GTCACTACGTCGACCAGATAGACGGGATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTT
758 G-CACTACGTCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
13934787 AGGCACACCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
822 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
13934852 C
887 C
* * * *
13934853 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
1 TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
** * * **
13934918 CTTTTTACGATTCAAGATTTTTTAAAATTTTTTCAGACTGAGTTTTGGCCCCAAACTTGGTAGAC
66 CTTTTTACGATTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
13934983 GTGATCCTTGT-TATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAATTGTACATGA
131 GTGATCCTTGTGT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
13935047 TTTTGTGACAATTTCAAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
195 TTTTGTGACCATTT-GAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
13935112 TCTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTGCAGGTTTGATGAGGGATAGGGGGCC
259 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTG-AGGTTTGATGAGGGATAGGGGGCC
** *
13935177 AATATAAGGGTCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCCGGCCCTCCTG
323 AATATAA-GG---AG----AG-ACCCATCACACATCATGTGCG-ACA-CCCCCCCGGCCCTCCCG
* * * * ** * * *
13935242 ATCACCGGAAGCCCAATGACGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCTCGGCT
377 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* ** * *
13935307 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCCGCATGTGCTGTTGCAACCCTCGGTCTAGTC
442 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTC
* * *
13935372 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCA
507 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
13935437 ACCCACCAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTG
572 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** * * *
13935502 GCCGGGTCCCCCTCTGTGTGATGCCGATCCTGCTGTTGCAACCCTCGATTCGGTCCAATCTTAGA
637 ACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGA
* * *
13935567 CTGGGAATGAACTCTGTATGCCTAAGCTAACCGATGAAACGACCGGGTGGGCGGGTAGGCACTAC
702 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGACCGGGCGGGC-GG-AGGCACTAC
* * * * * *
13935632 GTCGGCAAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGTACAT
765 GTCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
13935697 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
830 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
13935755 TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAA
1 TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* *
13935820 CTTTTTACGGTTTGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
66 CTTTTTACGATTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
13935885 ATGATCCTTGTGTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
131 GTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
13935950 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
196 TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
13936015 TAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGTAGGTTTGATGAGGGATAGGGGGCAAA
261 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTG-AGGTTTGATGAGGGATAGGGGGCCAA
* * *
13936080 TATAA-G-G-G-CCCATCACACATCATGTGCG-CA-CCCCCCGGCCCTCCCGATCATCAGAACCG
325 TATAAGGAGAGACCCATCACACATCATGTGCGACACCCCCCCGGCCCTCCCGATCACCGGAACCC
* * *
13936139 CAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGG
390 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* ** * **
13936204 CACCAGCACATGCCCAAGCCTAGCATGTGCTACCCCAACCCTCGGTCTGGTCCAATCTTAGACTG
455 CACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCAATCTTAGACTG
* *
13936269 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAA
520 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
* * * * * * *
13936334 GCGTGCGGGCGCTCAACCGGCCA-ACGGAGCGAGATGTGCAAGTCGAGGACCGACCGGGTCCCCC
585 GCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* *
13936398 TCTGTGTGCTGCCAATCCTGCTGCTGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAAC
649 TCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAAC
* * *
13936463 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGC-G-GGCACTACGTTGACCAGAGAGA
714 TCCGTATGCCTAAGCCAACCGATGAAACGACCGGGCGGGCGGAGGCACTACGTCGACCAGAGAGA
* * * *
13936526 GGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTAT
779 CGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
13936591 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
844 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
13936635 TTTAGGCCTTCACGTGAAGATTCATGGTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
1 TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* *
13936700 CTTTTTACGGTTCGGGATTTTTTTAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
66 CTTTTTACGATTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
13936765 GTGATCCTTTTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
131 GTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
13936830 TTTGTGACCATTTGAAAAAAGTGTCCTGATTTCAGACACTTTAATCGCTACTGGCAGCAAACCTG
196 TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
13936895 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGCCAA
261 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGTTTGATGAGGGATAGGGGGCCAA
* *
13936960 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCCCGGCCCCCCCGA
325 TATAA-GG---AG----AG-ACCCATCACACATCATGTGCG-ACA-CCC-CCCCGGCCCTCCCGA
* *
13937025 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATTCTCCGACGATGGTACCCCGACGA
378 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* ** * *
13937090 AGAAAAATGCGGCACCATCACATGCATGAGCCTAGCATGTGTTGTCGCAACCCTCGGTCCAGTCT
443 AGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCC
* * *
13937155 AATCTTATATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
508 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
13937220 GCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGTATACCCAACCCGGGGAACGA
573 CCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * ** *
13937285 TCGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCCACAACCCTTGGTCTGGTCTGATCTTAGAT
638 CCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGAC
* *
13937350 TGAGAATGAACTTCGTATGC
703 TGGGAATGAACTCCGTATGC
13937370 TTAGACTGGG
Statistics
Matches: 2238, Mismatches: 248, Indels: 71
0.88 0.10 0.03
Matches are distributed among these distances:
880 434 0.19
882 2 0.00
883 1 0.00
884 342 0.15
886 3 0.00
888 18 0.01
890 1 0.00
891 1 0.00
893 19 0.01
895 3 0.00
897 2 0.00
898 306 0.14
899 2 0.00
901 115 0.05
902 303 0.14
903 2 0.00
905 1 0.00
906 10 0.00
907 188 0.08
908 151 0.07
909 6 0.00
910 327 0.15
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TTTAGGCCTTCACGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
CTTTTTACGATTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGAGAGACCCATCACACATCATGTGCGACACCCCCCCGGCCCTCCCGATCACCGGAACCCC
AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
TGCGTGCTGCCAATCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGATGAAACGACCGGGCGGGCGGAGGCACTACGTCGACCAGAGAGACG
GGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
Found at i:13937382 original size:26 final size:26
Alignment explanation
Indices: 13937343--13937395 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13937333 CTGGTCTGAT
* **
13937343 CTTAGATTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACCCCGTATG
*
13937369 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGAGAATGAACCCCGTATG
13937395 C
1 C
13937396 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACCCCGTATG
Found at i:13937476 original size:185 final size:185
Alignment explanation
Indices: 13937137--13937554 Score: 570
Period size: 185 Copynumber: 2.3 Consensus size: 185
13937127 TGTGTTGTCG
* * *
13937137 CAACCCTCGGTCCAGTCTAATCTTATATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTTGGTCCAGTCTAATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
* * * * *
13937202 TCCGTATGCCTAAGTCAAGCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGTAT
66 CCCGTATGCCTAAGTCAAGCCACAAAACAAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGAGGGAT
* *
13937267 ACCCAACCCGGGGAACGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGTTGCCA
131 ACCCAACCCGGGGAACGATCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCA
** *
13937322 CAACCCTTGGTCTGGTCTGATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTTGGTCCAGTCTAATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
* *
13937387 CCCGTATGCCTAAGTCAAGCCACGAAACAAGCGAGCGGGCGCTCAGCCGGCCAGAGGGTAGGGAT
66 CCCGTATGCCTAAGTCAAGCCACAAAACAAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGAGGGAT
* ** ** * **
13937452 GCGTAAGTCGGGGATC-AGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCA
131 ACCCAACCCGGGGAACGA-TCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCA
* * *
13937507 AAACCCTTGGTCCAGTCTAATCTTAGACT-AGGAATGAACTCCGTATGC
1 CAACCCTTGGTCCAGTCTAATCTTAGATTGA-GAATGAACTTCGTATGC
13937555 CTAAGCCAAC
Statistics
Matches: 202, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 2 0.01
185 200 0.99
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
CAACCCTTGGTCCAGTCTAATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
CCCGTATGCCTAAGTCAAGCCACAAAACAAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGAGGGAT
ACCCAACCCGGGGAACGATCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCA
Found at i:13938287 original size:26 final size:26
Alignment explanation
Indices: 13938251--13938303 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13938241 ATGGTCCAAT
13938251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13938277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13938303 C
1 C
13938304 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13939180 original size:26 final size:26
Alignment explanation
Indices: 13939144--13939194 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13939134 CCAGTCCAAT
13939144 CTTAGACTGGGAACGAACTCCGTATC
1 CTTAGACTGGGAACGAACTCCGTATC
**
13939170 CTTAGACTGGGATTGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
13939195 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATC
Found at i:13939850 original size:893 final size:888
Alignment explanation
Indices: 13937341--13942252 Score: 4551
Period size: 902 Copynumber: 5.6 Consensus size: 888
13937331 GTCTGGTCTG
* * * * *
13937341 ATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
13937406 CCACGAAACAAGCGAGCGGGCGCTCAGCCGGCCAGA-GGGTAGGGATGCGTAAGTCGGGGATCAG
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGT-GGGATGCGCAAGCCGGGGATC-G
* ** * * * * * *
13937470 TCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCAAAACCCTTGGTCCAGTCTAATCTTAGAC
129 ACGGGT-CCCCTCTGTGTGCTGCTGATCCTGCT-TCGAAACCC-TCGTTCGGTCCAATCTTAGAC
*
13937535 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCGGGCAGGCAG
191 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GCGGGC-GG--G
* * *
13937600 TCACTACGCCGTCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTA
252 -CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
13937665 GGCACCCCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
316 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
13937730 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
381 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAA
* *
13937795 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
445 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
13937860 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
510 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
** * *
13937925 TTTGTGACCATTTGAAAAAAGTGTCCTGATTTCAGACACTTGAATCGCTACTGGCAGCAAACCTG
575 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
13937990 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
640 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC--
* * ** *
13938055 TATAAGCGCCAAATACCAGCACCCAATGCCCATCATGTGGGCACACCCGCCCGACCCCCCCGATC
703 ---AA-CG----ATACCAGCACCCAATGCACATCAGGTGCACACACCCACCCGACCCCCCCGATC
* * *
13938120 GCTGGAACCCCAATGCCTCCAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCGGACGAAG
760 ACTGGAACCCCAATGCCTCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCGGACGAAG
* * * * * **
13938185 AAAAATACTGCACCAACACGTGCTCGAGCCCAGCATGTGCTGCCGTAACCTTCGATATGGTCCA
825 AAAAATACTGCACAAACACATGCTCGAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
*
13938249 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
13938314 CCACGGAACGAGCGTGCGGGTGCTTAGCCAGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGA
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATC-GA
* * * * * *
13938379 TGGGTCCCC-C--TCTGC--CTGA---TGC-T-GCAACCCTCGGTCTGGTCCGATCTTAGACTGG
130 CGGGTCCCCTCTGTGTGCTGCTGATCCTGCTTCGAAACCCTCGTTC-GGTCCAATCTTAGACTAG
* * * *
13938434 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGTTGGGTGGGCACTAC
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTAC
* * * * *
13938499 GCCGGCTAGA-AGGACGGGATACGCAAGCCGAGGATCGATACGGTGGTAGGTGGGTTTTGGCACA
258 GCCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
13938563 TCTTCATGTTTTTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
322 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
13938628 CCTTCACGTGAAGTTTCATGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTT
387 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTT
* * * *
13938693 ACGGTTCGGGATTTTTTAAACTTTTTTCGAAAGTACTTTTGGCCCCAAACTTGGTAGACATGATC
451 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* *
13938758 CTTGTCTTTTTGTTGGCATGCACAAAAAAAATCAGCT-AAAACTCGAAGTGTACAAGATTTTGTG
516 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
13938822 CCCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
581 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
13938887 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA-TATAA
646 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACGAT-A
* * * **
13938951 GGGCCAAGTACTAGCACCCATCGTAGATCAGGTGCACACACCCCCACCCGGTCCCCCCGATCACT
710 ---CC-AG--C-A-C-CCAAT-GCACATCAGGTGCACACA--CCCACCCGACCCCCCCGATCACT
* *
13939016 GGAACCCCAATGCCGT-CGGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCCGG-TGAAGA
763 GGAACCCCAATGCC-TCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTG-CCCGGACGAAGA
* *
13939079 AAAATA-TGGCATAAACACATGC-CTGAGCCCAGCATGTACTGCCGCAACCCTCGATCCAGTCCA
826 AAAATACT-GCACAAACACATGCTC-GAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
* * *
13939142 ATCTTAGACTGGGAACGAACTCCGTATCCTTAGACTGGGATTGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** **
13939207 CCACGAAATTAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATATGCAAGCCAGGGGATCGA
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCC-GGGGATCGA
*
13939272 CCGGGTCCTCCTCTGTGTGCTGCTGATCCTGCTATCGTAACCCTCAGTTCGGTCCAATCTTAGAC
130 -CGGGTCC-CCTCTGTGTGCTGCTGATCCTGCT-TCGAAACCCTC-GTTCGGTCCAATCTTAGAC
* * * * * * *
13939337 TAGGAATAAACTCCATATGCCGAAGCCAACCGATGAAATGAGTGGGCGGGTAGGCGGGCGGGCAC
191 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-CGGCGGGCGGGCAC
*
13939402 TACGCAGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
255 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
13939466 CATCTTCATATTTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
320 CATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
13939531 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-A-TTTGAAACTT
384 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTGAAACTT
* *
13939594 TTTACGGTTCGGGAGTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATG
448 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
13939659 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
513 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
13939724 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
578 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
13939789 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAA-TA
643 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACGA
** * * * ** *** * * ** **
13939853 TA--AG-GGCCAA-GTAC--CA---GCACCCATCGCATATC-ATGTGCTCC-AGCGTTGGTGCCC
708 TACCAGCACCCAATGCACATCAGGTGCACACA-CCCA-CCCGA-CCCCCCCGATCACTGGAACCC
* ** ** ** * ** * * * * * *
13939907 C---GAC-GAAGAAAAATGCGGC-ACAA--CACATG-C--TCGAGCCCAG-C-ATG-----TGCT
770 CAATGCCTCCAGTCAGGTTCTCCGACAATGCTC-TGACGATGGTGCCCGGACGAAGAAAAATACT
* * * * * * * **
13939955 GTCGC-AAC-CCTCGGTCCG-GTCCGATCTTAG-ACTG-AG-AA---T-GA-AC--TCTGT
834 G-CACAAACACAT-GCT-CGAG-CCCAGCAT-GTACTGCCGCAACCCTCGATACAGTC-CA
* * * ***** * ** ** ****
13940003 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTC
1 AT-CTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATGAACTCCGTATGCCTAAG-TC
* * * * * * ** **** **
13940068 AA-CCA-G--CCAGAG-GGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT-CTGCGTGC
63 AACCCACGAAACA-AGCGTGCG-GGTGCTC-AGCC--GG-CCAAAGGGGT-GGGATGC-GCAAGC
* ** * *** * *
13940127 TGCCGATCCTGCTACCGCAACCCTC-GATTTGGT-CTGA---T-CTT----A----------G--
120 CGGGGAT-C-G--ACGGGTCCCCTCTG-TGTGCTGCTGATCCTGCTTCGAAACCCTCGTTCGGTC
13940170 --A--TT-G----GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGG
180 CAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG
* * * * * **
13940226 TGGACGGGCACTACGCCGGTCGGAGAGACGGGATGAGCAAGTTGTGGATCGATAGGGTGGTAGGT
244 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
13940291 GGGTGTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTGATGGCTTGTAAATTCATACA
309 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
13940356 ATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
374 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-T
* ** * * **
13940421 TTTGAAACATTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCAAAAAAC-
438 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACT
* * *
13940485 TGATAGACATGATCCTT-TCATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAAT
502 TGGTAGACATGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
**
13940549 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTAATTTCAGACACTTTAATGGCTACTGGCA
566 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
13940614 GCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATCAGGGATA
631 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * * * *
13940679 TGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACACCCCCCTTCG
696 GGGGGCC-----AA----CGA-TACCAGCACCCAAT-GCACATCAGGTGCACACACCCACC--CG
* * * * ** *
13940743 GCCCCCCCGATCGCCGGAACCCCAATG-CTGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGG
748 ACCCCCCCGATCACTGGAACCCCAATGCCT-CCAGTCAGGTTCTCCGACAATGCTCTGACGATGG
* * * * * * * * *
13940807 TGCCC-CAGCGAAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGCCGCATCCC
812 TGCCCGGA-CGAAGAAAAATACTGCACAAACACATGCTCGAGCCCAGCATGTACTGCCGCAACCC
* * *
13940871 TCGGTCCGGT-CA
876 TCGATACAGTCCA
* * * * * *
13940883 GATCTTTGAGTGGGAATCAACTCCGTATGCTTAGACTAGGAATGAACTCTGTTTGCCTAAGTCAA
1 -ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
13940948 CCCACGAAACAAGCGTACGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG
65 CCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATC-G
* * * * * * **
13941013 TCGGGTCTCCCTCTGCGTGCTG-TCGATCTTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGA
129 ACGGGTC-CCCTCTGTGTGCTGCT-GATCCTGCTTC-GAAACCCTCG-TTCGGTCCAATCTTAGA
* * * *
13941077 CTAGGAATGAACTCCGTTTGCCTAAGCCAATCGACGAAACCAGCGGAC--G-GGCGGGCGGGCAC
190 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCAC
* * **
13941139 TATGCTGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
255 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
13941204 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCCTAGAATGGTCCCCTA
320 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13941269 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
385 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTT
* * * *
13941334 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGA
449 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* *
13941399 TCCTTGTATTTTTGTTGGCAGGCA-AAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
514 TCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
13941463 GTCACCATTTG-AAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGTAGGAAACCTGTAA
578 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
13941527 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
643 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC-----
* * * * * * * *
13941592 AAGGGCCAAGTACCAGCACCC-ATCCCACATCATGTGCGCACGCCC-CCTGGCCCCCCTGATCAC
703 AA----CGA-TACCAGCACCCAAT-GCACATCAGGTGCACACACCCACCCGACCCCCCCGATCAC
* * * * * * * *
13941655 TAGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTCCCCCGACGAAGAA
762 TGGAACCCCAATGCCTCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCGGACGAAGAA
* * * * * *
13941720 AAAT-GTGGCACCAGCTCATGC-CTGAGCCCAGTATGTGCTGCCGCAACCCT---T---G----
827 AAATACT-GCACAAACACATGCTC-GAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
*
13941772 ------GACT--G-AT----T-CG-AT-CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
13941821 CCATGAAACGAGCATGCGGGCGCTCAGTCGGCCAAAGAGGCGGGATGCGCAAGCAGGGGATCGAC
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGA-
** * * * *
13941886 CGGGTTCCCCTCTGCATGCTG-TCGATCCT-ATTGCTGCAACCCTCGGTTCGATCCGATCTTAGA
130 CGGG-TCCCCTCTGTGTGCTGCT-GATCCTGCTT-C-GAAACCCTC-GTTCGGTCCAATCTTAGA
* * * * *
13941949 CT-GGAAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC-AG-GTG-GGC-AGCGGGCA
190 CTAGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCA
* * *
13942009 CTACGCCTGCCAGAGAGACAGGATGCGCACGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
254 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*** *
13942074 ACATCTTCATATTTCTTTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
319 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
13942139 AAGCCTTCACGTGAAGTTTCATGGTAGGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
384 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-GAAACTT
** *
13942204 TTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
448 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
13942253 GCCGATCGAT
Statistics
Matches: 3314, Mismatches: 500, Indels: 417
0.78 0.12 0.10
Matches are distributed among these distances:
835 175 0.05
836 49 0.01
837 239 0.07
838 4 0.00
839 1 0.00
840 2 0.00
842 3 0.00
846 1 0.00
847 1 0.00
848 2 0.00
850 3 0.00
851 2 0.00
852 3 0.00
854 2 0.00
856 2 0.00
857 10 0.00
858 9 0.00
860 7 0.00
861 11 0.00
862 36 0.01
863 23 0.01
864 8 0.00
865 13 0.00
866 11 0.00
867 19 0.01
868 12 0.00
869 15 0.00
870 6 0.00
871 229 0.07
872 175 0.05
873 21 0.01
874 23 0.01
875 12 0.00
876 9 0.00
877 9 0.00
878 10 0.00
879 29 0.01
880 36 0.01
881 12 0.00
882 9 0.00
884 15 0.00
885 12 0.00
886 2 0.00
887 1 0.00
888 3 0.00
889 1 0.00
890 7 0.00
891 153 0.05
892 278 0.08
893 231 0.07
894 19 0.01
895 10 0.00
896 69 0.02
897 1 0.00
898 112 0.03
899 6 0.00
900 6 0.00
901 162 0.05
902 310 0.09
903 4 0.00
904 112 0.03
905 198 0.06
906 233 0.07
907 11 0.00
908 112 0.03
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGAC
GGGTCCCCTCTGTGTGCTGCTGATCCTGCTTCGAAACCCTCGTTCGGTCCAATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACGATACCAGCA
CCCAATGCACATCAGGTGCACACACCCACCCGACCCCCCCGATCACTGGAACCCCAATGCCTCCA
GTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCGGACGAAGAAAAATACTGCACAAACACAT
GCTCGAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
Found at i:13939863 original size:905 final size:898
Alignment explanation
Indices: 13937341--13939890 Score: 3594
Period size: 892 Copynumber: 2.8 Consensus size: 898
13937331 GTCTGGTCTG
* * * * *
13937341 ATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
13937406 CCACGAAACAAGCGAGCGGGCGCTCAGCCGGCCAGA-GGGTAGGGATGCGTAAGTCGGGGATCAG
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGT-GGGATGCGCAAGCCGGGGATC-G
* ** * * * * * *
13937470 TCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCAAAACCCTTGGTCCAGTCTAATCTTAGAC
129 ACGGGT-CCCCTCTGTGTGCTGCTGATCCTGCT-TCGAAACCC-TCGTTCGGTCCAATCTTAGAC
*
13937535 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCGGGCAGGCAG
191 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GCGGGC-GG--G
* * *
13937600 TCACTACGCCGTCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTA
252 -CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
13937665 GGCACCCCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
316 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
13937730 CTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAA
381 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAA
* *
13937795 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
445 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
13937860 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
510 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
** * *
13937925 TTTGTGACCATTTGAAAAAAGTGTCCTGATTTCAGACACTTGAATCGCTACTGGCAGCAAACCTG
575 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
13937990 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
640 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * ** *
13938055 TATAAGCGCCAAATACCAGCACCCAAT-GCCCATCATGTGGGCACACCCGCCCGACCCCCCCGAT
705 TATAAGGGCCAAGTACCAGCACCC-ATCGCACATCAGGTGCACACACCCACCCGACCCCCCCGAT
* * *
13938119 CGCTGGAACCCCAATGCCTCCAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCGGACGAA
769 CACTGGAACCCCAATGCCTCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCGGACGAA
* * * * * **
13938184 GAAAAATACTGCACCAACACGTGCTCGAGCCCAGCATGTGCTGCCGTAACCTTCGATATGGTCCA
834 GAAAAATACTGCACAAACACATGCTCGAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
*
13938249 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
13938314 CCACGGAACGAGCGTGCGGGTGCTTAGCCAGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGA
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATC-GA
* * * * * *
13938379 TGGGTCCCC-C--TCTGC--CTGA---TGC-T-GCAACCCTCGGTCTGGTCCGATCTTAGACTGG
130 CGGGTCCCCTCTGTGTGCTGCTGATCCTGCTTCGAAACCCTCGTTC-GGTCCAATCTTAGACTAG
* * * *
13938434 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGTTGGGTGGGCACTAC
194 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTAC
* * * * *
13938499 GCCGGCTAGA-AGGACGGGATACGCAAGCCGAGGATCGATACGGTGGTAGGTGGGTTTTGGCACA
258 GCCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
13938563 TCTTCATGTTTTTGCATGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
322 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
13938628 CCTTCACGTGAAGTTTCATGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTT
387 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTT
* * * *
13938693 ACGGTTCGGGATTTTTTAAACTTTTTTCGAAAGTACTTTTGGCCCCAAACTTGGTAGACATGATC
451 ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* *
13938758 CTTGTCTTTTTGTTGGCATGCACAAAAAAAATCAGCT-AAAACTCGAAGTGTACAAGATTTTGTG
516 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
13938822 CCCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
581 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
13938887 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
646 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * **
13938952 GGCCAAGTACTAGCACCCATCGTAGATCAGGTGCACACACCCCCACCCGGTCCCCCCGATCACTG
711 GGCCAAGTACCAGCACCCATCGCACATCAGGTGCACACA--CCCACCCGACCCCCCCGATCACTG
* *
13939017 GAACCCCAATGCCGT-CGGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCCGG-TGAAGAA
774 GAACCCCAATGCC-TCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTG-CCCGGACGAAGAA
* *
13939080 AAATA-TGGCATAAACACATGC-CTGAGCCCAGCATGTACTGCCGCAACCCTCGATCCAGTCCA
837 AAATACT-GCACAAACACATGCTC-GAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
* * *
13939142 ATCTTAGACTGGGAACGAACTCCGTATCCTTAGACTGGGATTGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** **
13939207 CCACGAAATTAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATATGCAAGCCAGGGGATCGA
66 CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCC-GGGGATCGA
*
13939272 CCGGGTCCTCCTCTGTGTGCTGCTGATCCTGCTATCGTAACCCTCAGTTCGGTCCAATCTTAGAC
130 -CGGGTCC-CCTCTGTGTGCTGCTGATCCTGCT-TCGAAACCCTC-GTTCGGTCCAATCTTAGAC
* * * * * * *
13939337 TAGGAATAAACTCCATATGCCGAAGCCAACCGATGAAATGAGTGGGCGGGTAGGCGGGCGGGCAC
191 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-CGGCGGGCGGGCAC
*
13939402 TACGCAGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
255 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
13939466 CATCTTCATATTTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
320 CATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
13939531 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-A-TTTGAAACTT
384 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTGAAACTT
* *
13939594 TTTACGGTTCGGGAGTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATG
448 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
13939659 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
513 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
13939724 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
578 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
13939789 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATAT
643 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
13939854 AAGGGCCAAGTACCAGCACCCATCGCATATCATGTGC
708 AAGGGCCAAGTACCAGCACCCATCGCACATCAGGTGC
13939891 TCCAGCGTTG
Statistics
Matches: 1454, Mismatches: 157, Indels: 65
0.87 0.09 0.04
Matches are distributed among these distances:
890 2 0.00
891 176 0.12
892 274 0.19
893 231 0.16
894 19 0.01
895 8 0.01
896 69 0.05
898 4 0.00
899 3 0.00
900 4 0.00
902 2 0.00
903 3 0.00
904 110 0.08
905 231 0.16
906 192 0.13
907 11 0.01
908 112 0.08
909 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTGGGATGCGCAAGCCGGGGATCGAC
GGGTCCCCTCTGTGTGCTGCTGATCCTGCTTCGAAACCCTCGTTCGGTCCAATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTACGGT
TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCAGGTGCACACACCCACCCGACCCCCCCGATCACTGGAACCCC
AATGCCTCCAGTCAGGTTCTCCGACAATGCTCTGACGATGGTGCCCGGACGAAGAAAAATACTGC
ACAAACACATGCTCGAGCCCAGCATGTACTGCCGCAACCCTCGATACAGTCCA
Found at i:13940019 original size:26 final size:26
Alignment explanation
Indices: 13939980--13940032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13939970 CCGGTCCGAT
13939980 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
*
13940006 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
13940032 C
1 C
13940033 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:13942413 original size:26 final size:26
Alignment explanation
Indices: 13942377--13942429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13942367 CCGATCCGAT
*
13942377 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13942403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13942429 C
1 C
13942430 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13945783 original size:26 final size:26
Alignment explanation
Indices: 13945732--13945785 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
13945722 TGGGTTGACT
* * * *
13945732 TAGGCATATGGAGTTTATTTCTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
13945758 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
13945784 TA
1 TA
13945786 AGATCGGACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:13946408 original size:905 final size:903
Alignment explanation
Indices: 13944359--13950677 Score: 8230
Period size: 902 Copynumber: 7.1 Consensus size: 903
13944349 ATATGCCTCA
* * ** *
13944359 GCCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGTTAAAACTCCGTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
13944424 CAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCCTCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
13944489 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
13944554 ATGCAGAAAGATGACGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGGATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
13944618 CGTCTCTCTGG-C--CG-A-TG-TAGT--GCCCGCCCGCCCGTTCGTTTCGTCGGTGGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
13944675 CATACGGAGCTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAG
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
* * * * * *
13944740 CACGCAGAGGGGGACCTGATCGATCCCCGGCTTCCGCATCCCACCCCTCTGGCCGACTGAGTGCC
391 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * * * *
13944805 CAAACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTATGGAGT
456 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
13944870 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTTGGCTCAGGCATGT
521 TCATTCCCAGTCTAAGATCGGAC-CGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
13944935 GCTGGTACCGCATTTTTCCTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACTTGACTG-G
585 GCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAG
* * *
13944999 CGGCATTGAGGTTCCGACGATCGGGAGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGGGTGC
649 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
13945063 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAA
714 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
13945128 AGAGCATTTGAGATCTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACATTT
779 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
13945193 TTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTCTGCAT
844 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
13945252 GGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * ** ** * *
13945317 GAAAAATCTCGAACCGTCAAAATTTTTGAAAATAATTAAAAATAGAAAACGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
*
13945382 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
13945447 ACACAGAAATATGTAGATGTCCCCAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
13945512 CGTCTCTCTGGTCGACGTAGAGCCCGTCCGCCCGCCCACCCGCTCGTTTTGTCAGTTGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
13945577 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATTGGTAG
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
* * * * * *
13945642 CACGCAGTGGAGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCAGCTGAGGGCC
391 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * * * * *
13945707 CGCACACTAGTTTTGTGGGTTGACTTAGGCATATGGAGTTTATTTCTAGTCTAGGCATACGGAGT
456 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
*
13945772 TCATTCCCAGTCTAAGATCGGACCGATCCAAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGT
521 TCATTCCCAGTCTAAGATCGGACCGA-CCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * * * ** *
13945837 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCGTCGGAGGATCGCCAAAGAACCTAACCGA-
585 GCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAG
* * * *
13945901 CGGCATTGGGGTTCTGACGATCGGGGGGGGCCGAGGGGGTGTGCTCAAATGATGTGTGATGGGTG
649 CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
13945966 CTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTTATCAAGCCTCGAGAACTCACACCCCCTTA
713 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
13946031 AAGAGCATTTGAGATGTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
778 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
13946096 TTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCAT
843 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
13946157 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
13946222 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
13946287 GAAACTTCATGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
13946352 ATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * * * *
13946417 CGCCTCTTTGGCCGACGTAGTGCTTGCCCTCCTGCCCACCCACTCATTTCATCGGTTGGCATAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * ** * *
13946482 TATACGGAGTTCATTCCCAGTCTTAGATTGGACCAGACCGAGGGTTACGGTAGCTGGATCGACGG
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
* * ** * * * *
13946547 CACGCAGAGGGGGACCAGGCCGATCCTAGGCTTAGGCATCCCGCCCCTTTGGTCGGCTGAGCACC
391 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
13946612 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGT
456 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** ** *
13946677 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTATGCTTGGGCATGT
521 TCATTCCCAGTCTAAGATCGGACC-GACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * *
13946742 TCTGCTGCCGTA-TTTT-TT-T----------T--------CA---CCGGAGAACCTGACTG-GC
585 GCTGGTGCCGTATTTTTCTTCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAGC
* * * *** *
13946782 GGTATTGGGGTTTCGGCGATAAAGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGTTGCT
650 GGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
13946846 GGCACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
715 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
13946911 GAGCATTTGAGATTTAATAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTTT
780 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
13946976 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
845 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
13947035 GCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** * *
13947100 AAAAAATCCCAAACCGTAAAATGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
*
13947165 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
13947230 ATGCAGAAATATGTAGATGTCCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCACATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
13947295 TGTCTCTTTGGCCGACGTAGTGTTCCTCTGCCCACCCGCCCGCTCGTTTCGTCGGATGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
13947360 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCAGCAGCAAGATCGGCAG
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
* * * *
13947425 CACGCAAAGGGGGACCCAACCGATCCCCGGCTTACACATCCCGCCCCTTTGGCCGGCTGAGCGCC
391 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
13947490 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATACCCAGTCTAAGCATACGGAGT
456 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
13947555 TCATTCCCAATCTATGATTGGACAGGACCAAGGGTTACGACAACACATGCTGGGCTCGGGCATGT
521 TCATTCCCAGTCTAAGATCGGAC-CGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
13947620 GCTGGTGCCTTATTTTTCTTCACTGGGGCACCATCGCCAGAGCATTGCCGGAGAACCTGA-CTAG
585 GCTGGTGCCGTATTTTTCTTCTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAG
** *
13947684 CGGCATTGGGGTTCCGACGAT-TAGGGGGCC-AGAGGGTGTGCGCACATGATGTGCGATGGGTGC
649 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
13947747 TGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTGGAGAACTCACACCCCTTTAA
714 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
13947812 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGCACACTT
779 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
13947877 TTTTCAAATGGTCACAAAATGTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
844 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
13947937 GCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
**
13948002 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13948067 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAGAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
13948132 ACATAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * *
13948197 CGTCTCTTTGGCCGACATAGTGCTCGTCTGCCTACTCGCCCGCTCATTTCGTCTGTTGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
13948262 CATACAGAGTTTATTCCCAGTCTATGATCAGACCGGATCGAGGGTTGTC-GCAGCAAGATCGGCA
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGGCAGCAAGATCGGCA
* * * *
13948326 GCACGCAAAGGGGGACCCAACCGATCCCCGGCTTACACATCCCGCCCCTTTGGCCGGCTGAGCGC
390 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
13948391 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATACCCAGTCTAAGCATACGGAG
455 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
13948456 TTCATTCCCAATCTATGATTGGACAGGACCAACGGTTACGACAGCACATGCTGGGCTCGGGCATG
520 TTCATTCCCAGTCTAAGATCGGAC-CGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
13948521 TGCTGGTGCCTTATTTTTCTTCACTGGGGCACCATCGCCAGAGCATTGCCGGAGAACCTGA-CTA
584 TGCTGGTGCCGTATTTTTCTTCTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
** *
13948585 GCGGCATTGGGGTTCCGACGAT-TAGGGGGCC-AGAGGGTGTGCGCACATGATGTGCGATGGGTG
648 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
13948648 CTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTGGAGAACTCGCACCCCTTTA
713 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
13948713 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGCACACT
778 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
13948778 TTTTTCAAATGGTCACAAAATGTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
843 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
13948839 GCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
**
13948904 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13948969 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAGAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
13949034 ACATAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * *
13949099 CGTCTCTTTGGCCGACATAGTGCTCGTCTGCCTACTCGCCCGCTCATTTCGTCTGTTGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
13949164 CATACAGAGTTTATTCCCAGTCTATGATCAGACCGGATCGAGGGTTGTC-GCAGCAAGATTGGTA
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGGCAGCAAGATCGGCA
** * * * * *** *
13949228 AAACACAAAGGGGGACTCGACCAATCCCAAACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGC
390 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
13949293 CCGCACCCTAGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
455 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
13949358 TTCATTCCCAGTCTAAGATCGGACTGAACCAAAGGTTGCGGTAGCACATGCTAGGCTCGGGCATC
520 TTCATTCCCAGTCTAAGATCGGACCG-ACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * * * * * *
13949423 TGCTAGTGCCGTATTTTTCTTCACCGGTGCACCATCGTCGGAGCATCACCGGAGAAACTGATC-A
584 TGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * *
13949487 GCGGCATTAGGGTTTCGACTATCGGGGGCGCCGAGGGGGTGTGCACACATGATGTGCGATGGGTG
648 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
13949552 CTGGTACTTGGCCCTTGTATTGGGCCCCTATCCC-CGATCAAACCTTGAGAACTCACACCCCCTT
713 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACACCCCCTT
* *
13949616 AAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
777 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
13949681 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT--CTTGAATTTTTTTGTGCAT
842 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCAT
* * *
13949742 GCCAACAAAAATACAAGGATCATGTCT----A--------CCAAAACTCCTTTCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
13949795 AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13949860 GAAACTTCACGTGAAGCCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
13949925 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
13949990 CGTCTCTCTGGCCGACGTAGTG--C--CCGCCAGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGG
261 CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * * *
13950051 CATATAGAGTTTATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAAGATCGACAG
326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
* *** * * * * * * *
13950116 CACGTAGAGGGGGGACCCGGTTGATCCCCAGCTTGCACCTCCCGCACCTCAGGCCGGTTGAGCGC
391 CACGCAGA-GGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
13950181 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-C-TACGCGG
455 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA--CGG
* * * * *
13950244 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACGGTAGCACATGCTGGGTTCTGGCA
518 AGTTCATTCCCAGTCTAAGATCGGACC-GACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * **
13950308 TGTGCTGGTGCTGTATTTTCCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACC
582 TGTGCTGGTGCCGTATTTTTCTTC-TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * * *
13950373 -AGCGGCATTGGGGTTCCGGCAATCGGGGGGGTC-AGGGGGTGTGCGCACATGATGTGCAATAGG
646 GAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
** * * * *
13950436 TGCTGGTACTTGGCCCTTATATTTACCCCATAACCCTCATCAAACCTTGAGAACTCACACCCTCT
711 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
13950501 TAAA-AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACA
776 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
13950565 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTGTGCAT
841 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
13950628 GCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAACTCC
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
13950678 CAGTCTAAGC
Statistics
Matches: 4831, Mismatches: 523, Indels: 139
0.88 0.10 0.03
Matches are distributed among these distances:
878 725 0.15
879 12 0.00
880 31 0.01
883 1 0.00
885 98 0.02
886 132 0.03
887 202 0.04
888 120 0.02
889 2 0.00
891 226 0.05
892 1 0.00
893 204 0.04
894 36 0.01
895 1 0.00
897 2 0.00
898 11 0.00
899 2 0.00
900 4 0.00
901 4 0.00
902 2014 0.42
903 94 0.02
904 371 0.08
905 536 0.11
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTTTGGCCGACGTAGTGCTCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGTATTTTTCTTCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
Found at i:13946670 original size:26 final size:26
Alignment explanation
Indices: 13946640--13946692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13946630 GTTGACTTAG
* *
13946640 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13946666 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13946692 G
1 G
13946693 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13947554 original size:26 final size:26
Alignment explanation
Indices: 13947518--13947568 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13947508 GTTGACTTAG
* *
13947518 GCATTCGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
*
13947544 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATACCCAATCTA
13947569 TGATTGGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:13948456 original size:26 final size:26
Alignment explanation
Indices: 13948420--13948470 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13948410 GTTGACTTAG
* *
13948420 GCATTCGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
*
13948446 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATACCCAATCTA
13948471 TGATTGGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:13949353 original size:26 final size:26
Alignment explanation
Indices: 13949322--13949374 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13949312 GTTGACTTAG
*
13949322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13949348 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13949374 G
1 G
13949375 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13950705 original size:26 final size:26
Alignment explanation
Indices: 13950675--13950738 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
13950665 GGACCAAAAC
13950675 TCCCAGTCTAAGCATACGGAGTTCAT
1 TCCCAGTCTAAGCATACGGAGTTCAT
13950701 TCCCAGTCTAAGCATACGGAGTTCAT
1 TCCCAGTCTAAGCATACGGAGTTCAT
13950727 TCCCAGTCTAAG
1 TCCCAGTCTAAG
13950739 ATCGGACCGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
TCCCAGTCTAAGCATACGGAGTTCAT
Found at i:13951108 original size:479 final size:475
Alignment explanation
Indices: 13950210--13951152 Score: 1354
Period size: 479 Copynumber: 2.0 Consensus size: 475
13950200 GTTGACTTAG
13950210 GCATACGGAGTTCATTCCCAGTCTAACTACGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAACTAC-CGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * *
13950275 GAGGGTTACGGTAGCACATGCTGGGTTCTGGCATGTGCTGGTGCTGTATTTTCCTTCACCGGGGC
65 AAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTCCTTCACCGGGGC
* * * * *
13950340 ACCATCATCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCAATCGGGGGGGT
130 ACCATCACCAGAGCATCGCCGGAGAACCTAACCAGCGGCATTAGGGTTCCGGCAATCGGGGGCGT
* *
13950405 CAGGGGGTGTGCGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTTACCCCATAAC
195 CAGGGGGTGTACGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGACCCCATAAC
* *
13950470 CCTCATCAAACCTTGAGAACTCACACCCTCTTAAAAGCATTTGAGATTTTACAAGTTTGCTGCCA
260 CCTCATCAAACCTGGAGAACTCACACCCCCTTAAAAGCATTTGAGATTTTACAAGTTTGCTGCCA
* *
13950535 GTAGCCATTAAAGTGTCTCAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
325 GTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTC
* * *
13950600 GAGTTTTTAGCTGAATTTTTCTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTG
390 GAGTTTTTAGCTGAATTTTTCTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-
13950665 GGA-CCAAAACTCCCAGTCTAA
454 GGATCCAAAACTCCCAGTCTAA
* *
13950686 GCATACGGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAA-C-TACCGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * **
13950750 CTAAGGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGGTGCATTTTTCTTCGTCGGG
64 C-AAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTCCTTCACCGGG
* * * **
13950815 GCACCATCGCCAGAGCATCGTCGGAGAACCTAACCGGCGGCATTAGGGTTCCGGTGATC-GGGGC
128 GCACCATCACCAGAGCATCGCCGGAGAACCTAACCAGCGGCATTAGGGTTCCGGCAATCGGGGGC
* * ** * * * * *
13950879 GTCGGGGGGGGTGTATGCACATGATGTGCGCTGGGTGCTGTTAGTTGGCCCTTATATTGGCCCCC
193 GTC--AGGGGGTGTACGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGACCCCA
* * * *
13950944 TATCCTTCATCAAACCTGGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
256 TAACCCTCATCAAACCTGGAGAACTCACACCCCCTTAAA-AGCATTTGAGATTTTACAAGTTTGC
*
13951009 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTAC
320 TGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTAC
*
13951074 ACTTCGAGTTTTTAGCTGAATATTTT-TATGCATGCCAACAAAAATACAAGGATCACATTTACCA
385 ACTTCGAGTTTTTAGCTGAAT-TTTTCTATGCATGCCAACAAAAATACAAGGATCACATCTACCA
13951138 AGTTTGGATCCAAAA
449 AGTTTGGATCCAAAA
13951153 ATCCTTCTGA
Statistics
Matches: 412, Mismatches: 47, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
476 65 0.16
477 103 0.25
478 88 0.21
479 152 0.37
480 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (475 bp):
GCATACGGAGTTCATTCCCAGTCTAACTACCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACA
AGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCTGCATTTTCCTTCACCGGGGCA
CCATCACCAGAGCATCGCCGGAGAACCTAACCAGCGGCATTAGGGTTCCGGCAATCGGGGGCGTC
AGGGGGTGTACGCACATGATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGACCCCATAACC
CTCATCAAACCTGGAGAACTCACACCCCCTTAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAG
TAGCCATTAAAGTGTCTCAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTCTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
ATCCAAAACTCCCAGTCTAA
Found at i:13951620 original size:26 final size:26
Alignment explanation
Indices: 13951591--13951668 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
13951581 TGACTTAGGC
13951591 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
* *
13951617 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGA
*
13951643 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
13951669 TTGGTCTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:13951830 original size:26 final size:26
Alignment explanation
Indices: 13951800--13951852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13951790 TTTGACTTAG
*
13951800 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
13951826 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13951852 G
1 G
13951853 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13951982 original size:184 final size:184
Alignment explanation
Indices: 13951617--13952056 Score: 571
Period size: 184 Copynumber: 2.4 Consensus size: 184
13951607 CAGTCTAAGA
* * * **
13951617 ATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGTCTAAACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
* * *
13951682 AGGGTTACGACTGCAGGATTGACAACACACAAAGGGGGACCCAACCGATCCCCGACTTGCGCATC
66 AGGGTTACGACAGAAGGATCGACAACACAC-AAGGGGGACCCAACCGATCCCCGACTTGCGCATC
* * **
13951747 CCGCCCCTCTGGCCGACTGAGCGCCTGCTTGCTCATTTCATGGTTTGACTTAGGC
130 CCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGTTTGACTTAGGC
* * **
13951802 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCAGACTGGATTG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
* * * * *
13951867 AGGGTTAC-AGCAGAAGGATCGGCAACA-AGC-AGTGGGGATCCGACCGATCCTCGGCTTGCGCA
66 AGGGTTACGA-CAGAAGGATCGACAACACA-CAAG-GGGGACCCAACCGATCCCCGACTTGCGCA
* * **
13951929 TTCTGCCCCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCATGGTTTGACTTAGGC
128 TCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGTTTGACTTAGGC
* * *
13951986 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACTGGACCG
1 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
13952051 AGGGTT
66 AGGGTT
13952057 GCGGTAGCAC
Statistics
Matches: 220, Mismatches: 32, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 140 0.64
185 78 0.35
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (184 bp):
ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
AGGGTTACGACAGAAGGATCGACAACACACAAGGGGGACCCAACCGATCCCCGACTTGCGCATCC
CGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGTTTGACTTAGGC
Found at i:13952014 original size:26 final size:26
Alignment explanation
Indices: 13951984--13952036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13951974 TTTGACTTAG
* *
13951984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
13952010 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
13952036 G
1 G
13952037 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:13953409 original size:26 final size:26
Alignment explanation
Indices: 13953372--13953424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13953362 GTTGACTTAG
* *
13953372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
13953398 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
13953424 G
1 G
13953425 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:13955503 original size:26 final size:26
Alignment explanation
Indices: 13955467--13955519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13955457 GTTGACTTAG
*
13955467 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13955493 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13955519 G
1 G
13955520 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13956401 original size:26 final size:26
Alignment explanation
Indices: 13956371--13956421 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13956361 TTGACTTAGG
*
13956371 CATACCGAGTTCATTCCCGGTCTAAC
1 CATACCGAGTTCATTCCCAGTCTAAC
13956397 CATACCGAGTTCATTCCCAGTCTAA
1 CATACCGAGTTCATTCCCAGTCTAA
13956422 GATCGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACCGAGTTCATTCCCAGTCTAAC
Found at i:13957068 original size:901 final size:900
Alignment explanation
Indices: 13955308--13959838 Score: 5775
Period size: 864 Copynumber: 5.1 Consensus size: 900
13955298 CCCAGTCGAA
* * * * * * *
13955308 GCATATGGAGTTCATTCCCAGCCTAAGATTGGACAGGACCAAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
13955373 GCACGCAGAGGGGGACCTGACCGATCCCCAGCTTACACAACCCGCCCCTCTGGCCGGCTAAGCGC
66 GCA-GCAGA-GGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
13955438 CCACACGCTCCTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
13955503 TTCATTCCTAGTCTAAGATCGAATC-AGACCGAGGGTTACGGCAGCACATGCTGGCCTCGAGCAT
194 TTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * ** * * * *
13955567 GTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAGAACCTGACCG
258 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATCG
* ** * * * *
13955632 GCGGCATTGGGGTTCCGACGATCGAGGGGACCGGGGGGGTGTGCGTAGATGATGTACGATGGGTG
323 ACGGCATTGGGGTTCCGGTGATCG-GGGG-GCGGGGGGGTGTGCGCACATGATGTCCGATGGGTG
** * *
13955697 CTGGTACTTGGCTTTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
13955762 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAACGGGGACACT
451 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
13955827 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGTACGA-GCC
516 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCC
* *
13955891 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAA
580 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * ** *
13955956 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAA
645 AAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
13956021 ACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACA
710 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
13956086 CAGAAATATGAAGATGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
775 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
*
13956151 CTCTCGGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT-GTCGGTTGGCTTAG
840 CTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * *
13956211 GCATACGGAGTTCATTCCCAGTCTAAGGTTAGATTGGATCGAGGGTTGCGGTAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
13956276 GCATGCAGAGCGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
66 GCA-GCAGAG-GGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * * * * * *
13956341 CGGCACGGTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCGGTCTAACCATACCGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
13956406 TTCATTCCCAGTCTAAGATCGAACCGAAACGAGTGTTGCGGCACCACATGCTGGGCTCGGGCATG
194 TTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
13956471 TGTTGGTGCCGCATTTTTCTTCGTCTGTGCACCATCACCAGAGCATCGTCGGGGAACTTGATCGA
259 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATCGA
*
13956536 C-GCATTGGGGGTTCCGGTGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCT
324 CGGCATT-GGGGTTCCGGTGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCT
* * *
13956600 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTGACACCCCTTTAAA
388 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13956665 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCCTTT
453 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
13956730 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCGTACCAAC
518 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
13956795 AAAAATGCAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
583 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
13956860 TCTCGAACCGCAAAAAGTTTTGAAAATCATGAAATATAGAAAAGGAGTCGTCTTGCTATGAAACT
648 TCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
13956925 TCACGTGAAGGCTTAAGGGAGCATTGTATAAATTTACAAGCCATAAAAATCGCATTGGCACACAG
713 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
13956990 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCGC
778 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* **
13957055 TCTGGCTAGCGTAGT--------G-CC-TAC-CCC-CTCGTTTCGTCGGTTGGCTTAG
843 TCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
13957101 GCATACGGAGTTCATTCCTAGTC------T--A-C--AGC-A-GGAT-C-G--GCA-G--C-ACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
13957145 -CAG-AGA-GGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCCGGTCGGCTGAGCACCC
66 GCAGCAGAGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * *
13957207 GTACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACAGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * * **
13957272 CATTCCCAGTGAAAGATCGGACC-AGATCGAGGGTTGCAGCAACACATTATGGGCTCGGGCATGT
196 CATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
13957336 GCTGGTACTGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA-CAGG
260 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATC-GA
* * * ** *
13957400 CGGCATTGGGGTTTCAGTGATCGGGGGGCCGACGGGTGCGCGCACATGATGTGCC-ATGGGTGCT
324 CGGCATTGGGGTTCCGGTGATCGGGGGGCGGGGGGGTGTGCGCACATGATGT-CCGATGGGTGCT
*
13957464 GGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
388 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13957529 GCGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTT
453 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13957594 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTATTTGTGCATGCCAAC
518 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * ** * * * * *
13957659 AAAAATACAAGGGTCATGTCTACCAAGTTTGGGGATAAAACACTTTTCAAAAAAATTTAAAAAAA
583 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
13957724 TCTCGAACCGTAAAAAGTATTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
648 TCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
**
13957789 TCACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTTA
713 TCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
*
13957853 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAC-AGCTTGCGCATCCCGTC
777 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTC
** * * * *
13957917 TCTCTGAAC-GACGTAGT----GCCCGCCCGCCCGTCTGCTCGTTTTGTCGTTTGGCTTAG
841 TCTCTGGCCAG-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * *
13957973 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * ** * *
13958038 GCACCTAGAGGGGGAGCCGGTCGATCCTCGACTTGCGCATCCCATCCCTTTGGCCGGTTGAGCAC
66 GCAGC-AGA-GGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
13958103 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAC
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
13958168 TTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
194 TTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
13958232 GTACTGGTGCCGCATTTTTCTTCG-CTGGGGCACCAT---C---G---C--CGGAGAACTTGATC
258 GTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATC
*
13958285 -AGCGGCATTGGGGTGCCAGCGATCGAGCGATCGGGGGTGCCGGGGGGGGTGTGCGCACATGATG
322 GA-CGGCATTGGGGTTCC-G-G-T-----GATCGGGGG-G-C-GGGGGGGTGTGCGCACATGATG
* * *
13958349 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
375 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
13958414 ACACCCCATTAAAGAGCATTTGAGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAAGTGTCAGA
440 ACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
13958478 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTCTAGTTGAATTTTT
504 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
13958543 TTGTGCATGCCAACAAAAATAC-AGCGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
569 TTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
13958607 AAAAA-TTTAAAAGAATCTCGAAGCGTAAAAGGTATTGAAAATTGTGAAAAATAGAAAACGAGTC
633 AAAAATTTTAAAA-AATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
13958671 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
697 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
13958736 TGGCACTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATTCACCG-
762 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGA
* * *
13958800 CTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCG
826 CTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
*
13958865 GTAGGCTTAG
891 GTTGGCTTAG
* * * *
13958875 GCATACGGAGTTCATTCTCGGTCTAAGATTAGATCGGACCGAGGGTTAG-GGTAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTT-GCGGTAGCAGGATCGGC
* * *
13958939 AGCACGTAGAGGGGGCCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
65 AGCA-GCAGAGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCAC
*
13959004 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
13959069 TTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGCCAT
194 TTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * *
13959133 GTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGATCATCGTCGGAGAACTTGATCG
258 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATCG
** * * **
13959198 GTGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
323 ACGGCATTGGGGTTCCGGTGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTCCGATGGGTG
* * *
13959263 CTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACACCGTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
13959328 AAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAGTGGGGACATT
451 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
13959393 TTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
516 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
13959458 AGAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAACTGCTTCCGAAAAAATTTAAAA
581 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAA
* * * ** * * *
13959523 AAATTTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAA
645 AAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** * *
13959588 ACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGAGACAAAAATGGCATTGGCACG
710 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
*
13959653 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
775 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * *
13959718 CTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCCCGCCCGTTAGTTTCGTCGGTTGGCTTAG
840 CTCTCTGGCCAGCGTAGTG----CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
13959783 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCAGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGACCGAGGGTTGCGGTAGCA
13959839 CATGCTGGGC
Statistics
Matches: 3165, Mismatches: 362, Indels: 197
0.85 0.10 0.05
Matches are distributed among these distances:
863 4 0.00
864 679 0.21
865 9 0.00
866 3 0.00
867 1 0.00
868 3 0.00
869 4 0.00
870 2 0.00
871 1 0.00
872 42 0.01
873 3 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 3 0.00
887 25 0.01
888 1 0.00
889 12 0.00
890 41 0.01
891 1 0.00
892 4 0.00
893 3 0.00
894 2 0.00
895 10 0.00
896 4 0.00
897 14 0.00
898 634 0.20
899 2 0.00
901 658 0.21
902 105 0.03
903 535 0.17
904 219 0.07
905 11 0.00
907 2 0.00
908 84 0.03
910 2 0.00
912 27 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCAGCAGAGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGATCGACG
GCATTGGGGTTCCGGTGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
GGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:13958171 original size:26 final size:26
Alignment explanation
Indices: 13958132--13958184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958122 GTTGACTTAG
* * *
13958132 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
13958158 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
13958184 G
1 G
13958185 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:13959062 original size:26 final size:26
Alignment explanation
Indices: 13959033--13959085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13959023 GTTGACTTAG
*
13959033 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13959059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13959085 G
1 G
13959086 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13959492 original size:903 final size:900
Alignment explanation
Indices: 13957127--13959829 Score: 3848
Period size: 898 Copynumber: 3.0 Consensus size: 900
13957117 CCTAGTCTAC
* * * *
13957127 AGCAGGATCGGCAGCACACAGAGAGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCCG
1 AGCAGGATCGGCAGCACATAGAG-GGGGCCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
13957192 GTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTC
65 GCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * ** * * * **
13957257 TAAGCAAACAGAGTTCATTCCCAGTGAAAGATCGGACCAGATCGAGGGTTGCAGCAACACATTAT
130 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* * *
13957322 GGGCTCGGGCATGTGCTGGTACTGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTCGG
195 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCTCGGGGCACCATCGCC-GA-CATCGTCGG
* * * ** *
13957387 AGAACCTGA-CAGGCGGCATTGGGGTTTCAGTGATC-GGGGGGCC-GACGGGTGCGCGCACATGA
257 AGAACTTGATC-GGCGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
13957449 TGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAAC
321 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
13957514 TCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTG
386 TCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
13957579 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTA
451 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTT
* * ** * * * *
13957644 TTTGTGCATGCCAACAAAAATACAAGGGTCATGTCTACCAAGTTTGGGGATAAAACACTTTTCAA
516 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
13957709 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTATTGAAAATTGTGAAAAATAGAAAACGAGTCG
581 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTATTGAAAATTGTGAAAAATAGAAAACGAGTCG
13957774 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTACAAGCCATAAAAA
646 TCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAA
* *
13957838 TGGCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGC
710 TGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
* * * * * *
13957903 TTGCGCATCCCGTCTCTCTGAACGACGTAGTGCCCGCCCGCCCGTCTG--C--TCGTTTTGTCGT
775 TTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGG
* *
13957964 TTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGT
840 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGT
* * * * * ** *
13958025 AGCAGGATCGGCAGCACCTAGAGGGGGAGCCGGTCGATCCTCGACTTGCGCATCCCATCCCTTTG
1 AGCAGGATCGGCAGCACATAGAGGGGG-CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
13958090 GCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTC
65 GCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
13958155 TAAGCATACGGACTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
130 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCT
* *
13958220 GGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGCTGGGGCACCAT---CG----C--CGGAG
195 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCACCATCGCCGACATCGTCGGAG
* *
13958276 AACTTGATCAGCGGCATTGGGGTGCCAGCGATCGAGCGATCGGGGGTGCCGGGGGGGGTGTGCGC
259 AACTTGATCGGCGGCATTGGGGTTCCAGCGAT----C-A--GGGGG-GCC-GGGGGGGTGTGCGC
13958341 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
315 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
13958406 AAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAA
380 GAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAA
* * *
13958470 GTGTCAGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTCTAGTT
444 GTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCT
*
13958535 GAATTTTTTTGTGCATGCCAACAAAAATAC-AGCGATCAGGTCTACCAAGTTTGGGGCCAAAACT
509 GAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
13958599 CCTTCCGAAAAAATTTAAAAGAATCTCGAAGCGTAAAAGGTATTGAAAATTGTGAAAAATAGAAA
573 CCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTATTGAAAATTGTGAAAAATAGAAA
13958664 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
638 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
13958729 ATAAAAATGGCACTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGAT
703 ATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
13958794 TCACCGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTT
768 CCACAGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTT
* * * * * *
13958859 TCGTCGGTAGGCTTAGGCATACGGAGTTCATTCTCGGTCTAAGATTAGATCGGACCGAGGGTTAG
833 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-G
13958924 -GGT
897 TGGT
* *
13958927 AGCAGGATTGGCAGCACGTAGAGGGGGCCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
1 AGCAGGATCGGCAGCACATAGAGGGGGCCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
13958992 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCT
66 CCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
13959057 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTG
131 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTG
* *
13959122 GGCTCGGCCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGATCATCGTCGGA
196 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGCC-GA-CATCGTCGGA
*
13959187 GAACTTGATCGGTGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATG
258 GAACTTGATCGGCGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATG
** *
13959252 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTC
323 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
13959317 ACACACCGTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
388 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
13959382 GTGGGGACATTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
453 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTT
* * * *
13959447 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGGACCAAAAACTGCTTCCGAA
518 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
* * * * ** *
13959512 AAAATTTAAAAAAATTTTGAACCGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCA
582 AAAATTTAAAAAAATCTCGAACCGTAAAAAGTATT-GAAAATTGTGAAAAATAGAAAACGAGTCG
* * ** *
13959576 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGAGACAAAAAT
646 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
13959641 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
711 GGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* * *
13959706 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCCCGCCCGTTAGTTTCGT
776 TGCGCATCCCGTCTCTCTGGACGGCGTAGTG----CCCGCCCGCCCGCCCGCCCGTTCGTTTCGT
13959771 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTT
837 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTT
13959830 ACGGCAGCAC
Statistics
Matches: 1605, Mismatches: 157, Indels: 76
0.87 0.09 0.04
Matches are distributed among these distances:
887 30 0.02
888 1 0.00
889 1 0.00
891 1 0.00
894 1 0.00
895 6 0.00
896 3 0.00
897 11 0.01
898 677 0.42
900 1 0.00
901 195 0.12
902 87 0.05
903 246 0.15
904 222 0.14
905 6 0.00
907 2 0.00
908 80 0.05
910 1 0.00
912 34 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
AGCAGGATCGGCAGCACATAGAGGGGGCCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGCCGACATCGTCGGAGAA
CTTGATCGGCGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTAAAAAAATCTCGAACCGTAAAAAGTATTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGT
Found at i:13961546 original size:896 final size:890
Alignment explanation
Indices: 13959783--13962654 Score: 3708
Period size: 886 Copynumber: 3.2 Consensus size: 890
13959773 GTTGGCTTAG
* * *
13959783 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
13959848 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGTATCGTTGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATCGCCGGAGCATCGCCGGAG
* * *
13959912 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
13959977 CAATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTGGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
13960042 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
13960107 GGGGACACTTTTTTCAGAA-GGTCACAAAATCTTGTTCACTTCGACTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCA-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
13960171 GTGCAAGCCAAC------A-AA-AT---GTCTACCAAGTTTGGGGCCAAAAC-ACCTTCCAAAAA
389 GTGCAAGCCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTA-CTTCCAAAAA
* ** *
13960224 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
13960289 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTAT-TATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
13960353 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
* * * * * *
13960418 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCAT
648 CATCCCGTCTCTCTGGCCGATGTAGCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** *
13960483 ACGAAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCGGTAGTAGGATCGGTAGGAT
713 ACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCAT
* * ** * *
13960548 GCTGGGGGGGACCCGACTGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGACTGATAACCCGT
778 GC-AGAGGGGACCCGAC-GATCCC-GACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACTCGC
*
13960613 ACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAA
840 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
13960664 GCATACGGAGTTCATTCCTAACCAAAGATCGGCCCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
13960729 CTCAGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGA
* * *** * **
13960794 ACCTGACCGGCAGCATTGGCACTCTGACGATCGGGGGGGCCGAGGGGGTCAGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
13960859 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13960924 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
13960989 GGGGACACTTTTTTCAAATGGTTACAAAATCTCGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
13961054 AGCAAGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGCGGCCAAAACTACTTCCGAAAAA
390 TGCAAGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCC-AAAAA
* * * * * *
13961119 ATTTTTAAAAATCCCAAACCGTAAAAAGTTTCGTAAATCGTCAAAAATAGAAAACGAATCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
13961184 GCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *** * *
13961249 TTGTCATGCAAAAAAATGAAGATGCAACTAAACCCACCTACCACTCTATC-ATTCCAAGGCTTGG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCAAGGCTTGC
* * *
13961313 GCATCCTGTCTCTCTGGCCGGTGTAGCGCCCGCCTGCCCGCTCGTTTCGTCTGTTGGCTTAGGCA
647 GCATCCCGTCTCTCTGGCCGATGTAGCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
13961378 TACGGAGTTCATTCCCAGTCTAAGATTTGACCGGACTGAGGGTTGTGGTAGCAGGATCAACAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCA
** * * *
13961443 CACAGAAGGGGACCCGATCAATCCTCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACTCG
777 TGCAG-AGGGGACCCGA-CGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACTCG
* * *
13961508 CACGCTCGTTTTGTGTGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
13961560 GCATACGAAGTTCATTCCCAATCTAAGATC-AGATCGGACCGACGGTTGCGGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
13961624 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCG-GG--GC-T---C----CATCACCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAG
* * *
13961678 AACCTGACTGATGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGTGGGGGTGTGCACACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--G-GGGGGTGTGCGCACATGAT
13961742 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
13961807 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
13961872 AATGGGGACACTTTCTTCAAATTGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGACTTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
13961937 TTGTGCATGCCAACAAAAATTCAATGATCACGTCTACCAGGTTTGGGGCAAAAACTTCTTTCAAA
387 TTGTGCAAGCCAACAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTAC-TTCCAA
* * * *
13962002 AAAATTTTAAAAAATCTCGAAGCGTAAAAAGTTTTAAAAATCGTGAAAAATGGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
13962067 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
13962132 GCATTGGCACGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTT
* ** *
13962197 CCATATCCCGTCTCTCTGGCCGACATAGT-GCCCGCCCGCCCT-CCCGCTCGTTCCGTCGGTTGG
645 GCGCATCCCGTCTCTCTGGCCG--AT-GTAG--CGCCCG-CCTGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
13962260 CTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGAATCGAGGGTTACGGCAGCAGGA
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACT-GAGGGTTGCGGTAGCAGGA
* * * *
13962325 TCGACAACATGCAGAGGGCGACCCGACCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCGACT
768 TCGACAGCATGCAGAGGG-GACCCGA-CGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACT
*
13962390 GAGTGC-CT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCCAGTCTAA
830 GA--GCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
13962451 TCATACGAAGTTCACTT-ATAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGGACATGCTGG
1 GCATACGAAGTTCA-TTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
13962515 GCTCGAGCATGTGCTGGTGCCGTATTTTTTTTCATCGAGGCACCATCACCAGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
13962580 AACCTGACTGACGGCATTGGGGTTCC-AGTGATCGAGGGGGCCGGGGGGTGTGCGCAAATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
13962644 GTGATGGGTGC
194 GCGATGGGTGC
13962655 GCATCCCGTC
Statistics
Matches: 1712, Mismatches: 226, Indels: 87
0.85 0.11 0.04
Matches are distributed among these distances:
881 149 0.09
882 207 0.12
884 8 0.00
885 35 0.02
886 441 0.26
887 4 0.00
888 3 0.00
889 5 0.00
890 71 0.04
891 198 0.12
892 8 0.00
893 3 0.00
894 28 0.02
895 104 0.06
896 369 0.22
897 2 0.00
898 1 0.00
900 29 0.02
901 2 0.00
902 38 0.02
903 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (890 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCAAGCCAACAAAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCAT
CCCGTCTCTCTGGCCGATGTAGCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCA
GAGGGGACCCGACGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACTCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:13965907 original size:26 final size:26
Alignment explanation
Indices: 13965877--13965929 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13965867 GTTGACTTAG
13965877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13965903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13965929 G
1 G
13965930 ATAGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13967958 original size:905 final size:897
Alignment explanation
Indices: 13965435--13970870 Score: 7188
Period size: 905 Copynumber: 6.1 Consensus size: 897
13965425 ACACCCCCTT
** * * *
13965435 GGGCCAAAACTCCTTCCGAAAAAATTTTAGCAAATCCCGAACTGCAAAAAG-TTTCAAAAATCGA
1 GGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCGT
* *
13965499 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTTTATG
65 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*** * *
13965564 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATGTGAAGAAGTGCCTAAACCCACCTAC
130 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * * *
13965629 CACCCTATCGATCCACGGCTTGCTTTATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGT
195 CACCCTATCGATCCACAGCTTGC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGC
* * * *
13965694 CCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
259 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * * * *
13965759 GAGGGTTAC-AGTAGCAGGTTTGACAGCATGCAGTGGGGGACCCAACCGATCCTCAGCTTGCGCA
324 GAGGGTTACGA-CAGCAGGATCGACAGCACGAAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
* * * * *
13965823 TCCCGCCCCTCT-GTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAG
388 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
13965887 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGA-CGAGGGTTGC
453 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGC
* * ** * * * **
13965951 GGTAGCACATGCTAGGCTCGGGCATGTACTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGTT
518 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCC
* * * * *
13966016 GGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCTGATGATCGG-GGGCGCCTGGGGGG
583 GGAGCATCGCCAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGCGGGCG---GGGGGG
* ** *
13966080 ATGT--GCACATGATGTGCGATAGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
645 -TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCAT
*
13966143 CAAACCTCGAGAAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
709 CAAACCTCGAG-AACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
13966208 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAATTCGAG-
772 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
13966271 TTTTAGCTGAATTTTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
837 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
*** ** * *
13966332 GGAATAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTTCAAAAATAG
1 GGGCCAAAACTCC-TTCCAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCG
*
13966397 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTAT
64 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
13966462 GAATTTACAAGCCATAAACATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTA
129 GAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
13966527 CCACCATATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGC
194 CCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGC
* * * * * **
13966588 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTAATTCCCATTCTAAGATTGTACCAAACC
259 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * ** * * *
13966653 GTA-GGTTGC-AGCCGCAGGATCGGTAGCAC-ATGGAGGGGGACCCGACCGATCCTCGTCTTACG
324 G-AGGGTTACGA-CAGCAGGATCGACAGCACGA-AGAGGGGGACCCGACCGATCCTCGGCTTGCG
* ** * * *
13966715 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACATTCGTTTCATGCGTTGACTTAGGCATACGA
386 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** *
13966780 AGTTCATTCCCAGTTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCTAACCAGACCG-AGTT
451 AGTTCATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAG-G
* * * *
13966844 TTGCGGTAGCACATGCTGGGCTCGAGCATCTGCTGGTGCTGCATTTTAC-TCGCCG-GGCCACCA
514 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGG-CACCA
** * * *
13966907 TCTTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGCCGGGG
578 TCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGCGGG-CGGGG
* *
13966971 GGGTGTGCGCGCATGATGTGCGATGGGTGCTGCGTACTTGGCCCTTATATTAGCCCTCTATTCCC
642 GGGTGTGCGCACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTAGCCCCCTA-TCCC
* *
13967036 TCATCAAACCTTGAGAACTCAACACCGCTTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCCTG
705 TCATCAAACCTCGAGAACTC-ACACC-C--CTTAAAGAGCATTTGAGATTTTACAGGTTTG-CTG
* * *
13967101 CCAGTAGCCATTAAATTGTCTGAAATTGGGACAC-TTTTTCAAATGGACACAAAATCTTGTACAC
765 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
13967165 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGT
830 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
13967230 TTG
895 TTG
* ** *
13967233 GGGCCAAAACACCTTCCAAAAAATTAAAAAAAAATCCCGAACCGTAAAAAGTTTTTGAAAAATCG
1 GGGCCAAAACTCCTTCCAAAAAATT-TTAAAAAATCCCGAACCGTAAAAAG-TTTTCAAAAATCG
* * * *
13967298 TGAGAAATAGAAAACGAGTCGTCTGGCGATGAAACTTCACGTTAAAGGCTTAA-GGACCATTGTA
64 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTA
* *
13967362 TGAATTTACAGGCCAT-AAAATGGCATTGGCGTACAGAAATATGAAGATGTGCCTAAACCCACCT
128 TGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACC-
* *
13967426 TACCACCCTATCGATCCA-AGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCC
192 TACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
* *
13967490 GCCCGCTCGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTTCTAAGATTGGACCGG
257 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCGG
* * * * *
13967555 ACTGAGGGTTACGACAGCAAGATCGACAGCACGAAGAGGGGGACCAGATCGATCCTTGGCTTGCG
321 ACCGAGGGTTACGACAGCAGGATCGACAGCACGAAGAGGGGGACCCGACCGATCCTCGGCTTGCG
* *
13967620 CATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
386 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
13967685 CAACTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGATCGGACCAGA-CGAAGGT
451 -AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGT
13967749 TGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATC
515 TGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATC
** *
13967814 GCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGACTTTCCGACGATCGAGCGGTCGGGGGG
580 GCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCG-GCGGGC-GGGGG
* * * * *
13967879 GGTTTGCACACATGATGGGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCA
643 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCA
* * * *
13967944 TCAAACCTTGAGAACTCACACTCCCTTAAAGAGGATTTGACATTTTACAGGTTTTCTGCCAGTAG
708 TCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
13968009 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
772 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
13968074 TTTTAGCTGAATTTTTTTGTCCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
837 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
13968135 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTT-GAAAATCGT
1 GGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCGT
*
13968199 GAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
65 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
13968264 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTAC
130 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
13968329 CACCCTATCGATCCACGGTTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCC
195 CACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG--
* *
13968394 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGT
258 C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* ** * * * * * * *
13968459 ACCAAGGGTTGTGGCAGCAGGATTGGCAGCACGCAA-AAGGGGACCCGACCTATCCCCGGCTTGT
321 ACCGAGGGTTACGACAGCAGGATCGACAGCACG-AAGAGGGGGACCCGACCGATCCTCGGCTTGC
* * * *
13968523 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCTTACG
385 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
13968588 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
450 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGT
* ** * * * *
13968653 TGTGACAACACATGCTGGGTTCGGGCATGTGCTGGTGGCTGCATTTTTCTTTG-CCAGGGCACCA
515 TGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT-GCTGCATTTTTCTTCGTCGA-GGCACCA
* * * * * * *
13968717 TCGCCAGAGCATCGCCGGAGAACCTGAACGACAGCATT-AGGGTTCTGACGATCGGGTGGGCCGG
578 TCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATC-GGCGGG-CGG
* *
13968781 GGGGTTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCC
640 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCC
* *
13968846 TCATCAAACCTCG-GAACTCACACCCCTTAAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAG
705 TCATCAAACCTCGAGAACTCACACCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
13968910 TAGCCATTAAAGTGTCTAAAATGAGGACACCTTTTTCAAAT-GTCACAAAATCCTGTACACTTCG
769 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
13968974 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACATGGATCACGTCTACCACGTTTG
834 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
13969038 GGTCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAATCGTAAAAAG-TTTCAAAAATCA
1 GGGCCAAAACTCCTTCC--AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCG
* * ** * * *
13969102 TGAAAAATAAAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGTTTTAAAGAACCGTTGTA
64 TGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
13969167 TGAATTTACAAGCCATAAAAATGGCATTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCT
128 TGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
13969232 ACCACCCTATCGATCCACA-TTGTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCAC
193 ACCACCCTATCGATCCACAGCT-TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
* * * * **
13969296 GCCCACACGTTTCGTTGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCGAATTGGA
257 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * ** * * * * *
13969360 CCAAGGGTTACGGCAATAGGATC-AGTAGCACGTAGAGGGGGACCTGACCGATCCTCGACTTCCG
322 CCGAGGGTTACGACAGCAGGATCGA-CAGCACGAAGAGGGGGACCCGACCGATCCTCGGCTTGCG
*
13969424 CATTCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT-GG-TGACTTAGGCATACGG
386 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
13969487 AGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
451 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTT
* * * * *
13969552 GCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCG-GGCACCAT--
516 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCG
* * * *
13969614 -C---G--TCG---GAGAACCTAATCGGCGGCATT-AGGGTTCCGACGATCGGGGGGCCGGGGGG
581 CCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATCGGCGGGCGGGGGGG
*
13969669 TGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAG-CCCCTATCCCTCATC
645 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATC
13969733 AAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
710 AAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
13969798 ATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTACGAGTTT
774 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
13969863 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTG
839 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * *
13969922 GGGCCAAAACACCTTCCAAAAAAATTAAAAAAAATCCCGAACGGTAAAAAGTTTT-GAAAATCGT
1 GGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCGT
*
13969986 GAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
65 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
13970051 AATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
130 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
13970116 CACCCTATCGATCCA-AGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGCC
195 CACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC
* * * * *
13970180 CGCTCATTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTG
260 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * *
13970245 AGGGTTACGACAGCAAGATCGACAGCATGAAGA-GGGGACCCGATCGATCCCCGGCTTGCGCATC
325 AGGGTTACGACAGCAGGATCGACAGCACGAAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATC
* * *
13970309 CCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGCGCT
390 CCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * **
13970374 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGAATGAAGGTTGCGG
455 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGG
* * *
13970439 TAGCACATGTTGGGCTCGGGCATGCGCTGGTGCTGCATTTTTCTTCGTTGAGGCACCATCGCCGG
520 TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGG
* * * *
13970504 AGCATCGCCAGAGAACCTAACCGGCGGGCATTGAGTTTTCGACGATCGAGGCGGTCGGGGGGGGT
585 AGCATCGCCAGAGAACCTGACCGGC-GGCATTGAGGTTCCGACGATC--GGCGGGC-GGGGGGGT
* * * * *
13970569 TTGCACACATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATT-GGCCCCTATCCCTCATCA
646 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCA
* * *
13970633 AACCTCGAGAACTCACATGCCCTTAAAGAGGATTTGACATTTTACAGGTTTGCTGCCAGTAGCCA
711 AACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
13970698 TTAAAGTGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
775 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
13970763 TAGCTGAA-TTTTTTGTCCATACC-AAAAAAATACAAGGATCACGTCTACCAAGTTTG
840 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
13970819 GGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
1 GGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
13970871 NNNNNNNNNN
Statistics
Matches: 3993, Mismatches: 452, Indels: 189
0.86 0.10 0.04
Matches are distributed among these distances:
881 130 0.03
882 207 0.05
883 296 0.07
884 114 0.03
885 31 0.01
887 1 0.00
888 3 0.00
890 2 0.00
892 3 0.00
893 4 0.00
894 127 0.03
895 95 0.02
896 185 0.05
897 152 0.04
898 172 0.04
899 389 0.10
900 379 0.09
901 308 0.08
902 166 0.04
903 167 0.04
904 392 0.10
905 593 0.15
906 43 0.01
907 34 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTACGACAGCAGGATCGACAGCACGAAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGT
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGA
GCATCGCCAGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGCGGGCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
Found at i:13968620 original size:26 final size:26
Alignment explanation
Indices: 13968584--13968633 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13968574 GACTTAGGCT
13968584 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
13968610 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
13968634 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:13969515 original size:26 final size:26
Alignment explanation
Indices: 13969479--13969531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13969469 GGTGACTTAG
13969479 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13969505 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13969531 G
1 G
13969532 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13970402 original size:26 final size:26
Alignment explanation
Indices: 13970362--13970412 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13970352 GTTGACTTAG
*
13970362 GCATACGGCGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
13970388 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGCTCATTCCCAGTCTA
13970413 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13972568 original size:26 final size:26
Alignment explanation
Indices: 13972538--13972590 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13972528 GTTGACTTAG
13972538 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
13972564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
13972590 G
1 G
13972591 ATCGCACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:13974900 original size:26 final size:26
Alignment explanation
Indices: 13974848--13974900 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13974838 ATTGGCTTAG
*
13974848 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCCTTCCCAATCTAA
* *
13974874 GCATATGGAG-TCCATTCCCAATGTAA
1 GCATACGGAGTTCC-TTCCCAATCTAA
13974900 G
1 G
13974901 ATCGGATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCCTTCCCAATCTAA
Found at i:13976641 original size:26 final size:26
Alignment explanation
Indices: 13976610--13976662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13976600 GTTGACTTAG
* *
13976610 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
*
13976636 GCATACGAAGTTCTTTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
13976662 G
1 G
13976663 ATCAGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:13977547 original size:26 final size:26
Alignment explanation
Indices: 13977510--13977562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13977500 GTTGACTTAG
13977510 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
13977536 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
13977562 G
1 G
13977563 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:13977959 original size:899 final size:890
Alignment explanation
Indices: 13975357--13978274 Score: 3956
Period size: 900 Copynumber: 3.3 Consensus size: 890
13975347 CGTAAAATCC
* *
13975357 TGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCA
1 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
13975422 TAAAAATGGCATTGGCATGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
66 TAAAAATGGCATTGGCAAG-CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
* * *
13975486 CCACGGCTTGCGCATCTCGTCTTTCTGGCCGACGTAGTGCC-CGCCCGTCCGCCCGCCCGCTCAT
130 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCG--C--CCGCCCGCCCGCTCGT
* * ** * *
13975550 TTCGTCGGTTGGCTTAGGCATACGGAGGTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGTTA
191 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * *
13975615 CAGTAGCAGGATCGACAGCACACAGAGGGGGACC-CGA----C--CG-ATCTCGCCCCTCTGGCC
256 CAGTAGTAGGATCGGCAGCACGCAGAGGGGGACCGCGATCCCCTTCGCATCCCGCCCCTCTGGCC
* * * * * * **
13975672 GGCTGAGCGCCCGCACGTTTGTTTTATGGGTTAACTTAGTTATACGAAGTTCATTCCCAGTCTAA
321 GGCTGAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
*
13975737 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
385 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ***
13975801 CTCGGGCATGTGCTCGTGCCGCATTTTTCTTCGTC-AGGGCACAATCATCGGAGCATTATCGGAG
450 CTC-GGCATGTGTTGGTGCCGCATTTTTCTTCACCGA-GGCACCATCATCGGAGCATCGCCGGAG
* * * * **
13975865 AACCTGACCGGCGACATTGGAGTTCCGACGATCGGAGGGGCCGGGGGGTGCGCATACATGATGTG
513 AACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
13975930 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAC
578 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
13975995 CCCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
643 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
13976060 GGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTCGCTGAATGTTTTTG
708 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
13976125 TGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCAAAAAATCCATTCGAAAAA
773 TGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* *
13976190 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
837 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
13976244 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCA
1 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
13976309 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACTCACCTACCACCCTATCGATC
66 TAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
* * * * * *
13976374 CACGGCTTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCC-CACCCGCCTGCCTGCTAGTTTTGT
131 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
13976438 CGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCTGACCAGACTGAGGGTTGCGGTA
196 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTA
* * *
13976503 GTAGGATCGGCAACACGCAAAGGGGGACCCGGCCGATCCCCAACTTGCACATCCCGCCCCTCTGG
261 GTAGGATCGGCAGCACGCAGAGGGGGA-CC-G-CGAT-CCC--CTT-CGCATCCCGCCCCTCTGG
* *
13976568 CCGGCTAAGCACCCGCACGCTCATTTCATTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
319 CCGGCTGAGCACCCGCACGCTCGTTTCA-TTGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTC
* * * * * * * *
13976633 TAAGCATACGAAGTTCTTTCCCAGACTAAGATCAGACCCGATCGAGGGTTACGGTAGCACATGCT
382 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * * *
13976698 GGGCTCGAACATGTGTTGGTGTCGTATTTTTCTTCTCCGGGGAACCATCAT-TGAGTTATCGCCG
447 GGGCTCG-GCATGTGTTGGTGCCGCATTTTTCTTCACCGAGGCACCATCATCGGAG-CATCGCCG
* * *
13976762 GAGAACCTGACCGGCGGCATTGGGG-TTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGA
510 GAGAACCTGACCGGCGACATTGGGGTTTCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
13976826 TGTGCGATGGGTGTTGGTACTTGGCCCTTATACTGGCCCCCTCTCCCTCATCAAACCTCAAGAAC
574 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
13976891 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTG
639 TCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
*
13976956 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
704 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
13977021 TTTGTGCG-TGCCTAA-AAACATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
769 TTTGTG-GATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-C
* * *
13977084 AAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
831 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
13977143 TGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
1 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
13977208 TAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGATC
66 TAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
* * *
13977273 CACGGCTTGTGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCG-TT
131 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CTCGCCCGCCCGCCCGCTCGTTT
* * * *
13977337 CATCGGTTGGCTTAGGCATACGGAGTTGATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCA
193 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA
*
13977402 GTGGTAGGATCGGCAGCACGCAGAGGGGGACCGACTGATCCCTGGCTTACGCATCCCGCCCCTCT
258 GTAGTAGGATCGGCAGCACGCAGAGGGGGACCG-C-GATCCC---CTT-CGCATCCCGCCCCTCT
* * *
13977467 GGCCGGCTGACCACCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAAT
317 GGCCGGCTGAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATAC-GAGTTCATTCCCAGT
* *
13977532 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGCCAGCACATGC
381 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGC
* * * *
13977597 TAGGCTCAGGCATGTGTTGGTGCCACAATTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCG
446 TGGGCTC-GGCATGTGTTGGTGCCGCATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCG
* * *
13977662 GAGAACCTGACCGTCGATAATGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
510 GAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
13977727 GTGTGATGGGTGCTGGTACCTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
575 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
13977792 CACATCTCCTTAAAGAGCATTTGATATTTTGCAGGTTTACTGCTAGTAGCCATT-AAGTGTCTAA
640 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
13977856 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
705 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
13977921 TTATGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
770 TTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAA
* * *
13977986 AAAATTTTAAAAAATCCCGAACAGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAA
834 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
13978043 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
1 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
13978108 TAAAAATGGCATTGGCACA-CAGAAATTTGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
66 TAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * *
13978172 CCATGGCTTGCACATCCCATCTCTCTGGCCGGCATAGTGCAT-GCCCACCCGTCTGCTCGTTTCG
130 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGCCCGCTCGTTTCG
*
13978236 TCTGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
195 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
13978275 CATACGGAGC
Statistics
Matches: 1774, Mismatches: 216, Indels: 73
0.86 0.10 0.04
Matches are distributed among these distances:
883 93 0.05
884 2 0.00
885 1 0.00
886 2 0.00
887 163 0.09
894 1 0.00
896 23 0.01
897 32 0.02
898 40 0.02
899 380 0.21
900 877 0.49
901 61 0.03
902 85 0.05
903 14 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCGCCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTA
GTAGGATCGGCAGCACGCAGAGGGGGACCGCGATCCCCTTCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGC
ATGTGTTGGTGCCGCATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCGGAGAACCTGAC
CGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
Found at i:13978283 original size:25 final size:25
Alignment explanation
Indices: 13978249--13978299 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
13978239 GTTGGCTTAG
* *
13978249 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGCTCATCCCAGTCTAA
13978274 GCATACGGAGCTCATCCCAGTCTAA
1 GCATACGGAGCTCATCCCAGTCTAA
13978299 G
1 G
13978300 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (25 bp):
GCATACGGAGCTCATCCCAGTCTAA
Found at i:13978895 original size:740 final size:739
Alignment explanation
Indices: 13977477--13979019 Score: 2260
Period size: 740 Copynumber: 2.1 Consensus size: 739
13977467 GGCCGGCTGA
* * *
13977477 CCACCCG--CACGCTCGTTTCGT-TGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCA
1 CCACCCGTCCACGCTCGTTTCGTCT-GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCA
* * * *
13977539 TACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGCCAGCACATGCTAGGCTC
64 TACGAAGCTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTAGGCTC
* ** *
13977604 AGGCATGTGTTGGTGCCACAATTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACC
129 AGGCATGTGTTGGAGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACC
* *
13977669 TGACCGTCGATAATGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGAT
194 TGACCGTCGAT-ATAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGAT
* *
13977734 GGGTGCTGGTACCTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACATCT
258 GGGTGCTGGTACCTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
13977799 CCTTAAAGAGCATTTGATATTTTGCAGGTTTACTGCTAGTAGCCATTAAGTGTCTAAAATGGGGA
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAGTGTCTAAAATGGGGA
* * *
13977864 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGGAT
388 CACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCAT
* * *
13977929 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
453 GCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTACGAAAAAATTTT
*
13977994 AAAAAATCCCGAACAGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
518 AAAAAATCCCGAACAGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
13978059 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
583 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
13978124 ACACAGAAATTTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCC
648 ACACAGAAATATGAAGATGTACCGAAACCCACCTAACACCCTATCGATCCACGGCTTGCACATCC
* *
13978189 CATCTCTCTGGCCGGCATAGTGCATGC
713 CATCTCTCTGGCCGACATAGTGCACGC
*
13978216 CCACCCGT-C-TGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATA
1 CCACCCGTCCACGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATA
* * * * *
13978279 CGGAGCTCA-TCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACTTGCTGGGCTCGG
66 CGAAGCTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTAGGCTCAG
* * * ** *
13978343 GCATGTGTTGGAGCTATATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTG
131 GCATGTGTTGGAGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTG
*
13978408 ACCGGTGGCAT-TAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGTGA
196 ACC-GTCG-ATATAGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGTGA
* *
13978472 TGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCATATCCCTCATCAAACCTTGAGAACTCACAC
257 TGGGTGCTGGTACCTGGCCCTTATATTGGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACAC
* *
13978536 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGG
321 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATT-AAGTGTCTAAAATGG
* *
13978601 GGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGTG
385 GGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATG
* * *
13978666 CATGCCAATAAAAATACAAGGATCACGTCTACTAAATTTTGGG-CAGAAACTCCTTACGAAAAAA
450 CATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCA-AAACTCCTTACGAAAAAA
* * **
13978730 TTTTAAAAAATCCTGAACTGCA-AAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
514 TTTTAAAAAATCCCGAACAGCAGAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
13978794 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTTTATAAATTTATAAGCCATAAAAATGGCA
578 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCA
** * *
13978859 TTGGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTAACACCCTATCGATCCACGGCTTGCG
643 TTGGCACACAGAAATATGAAGATGTACCGAAACCCACCTAACACCCTATCGATCCACGGCTTGCA
* * *
13978924 CATCCCATTTCTCTGGCCGACGTAGTGCCCGC
708 CATCCCATCTCTCTGGCCGACATAGTGCACGC
* *
13978956 CCGCCCGTCCGCACGCTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG
1 CCACCCGT-C-CACGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAG
13979020 ATTGTACCGG
Statistics
Matches: 718, Mismatches: 71, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
737 129 0.18
738 35 0.05
739 167 0.23
740 338 0.47
743 1 0.00
744 40 0.06
745 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (739 bp):
CCACCCGTCCACGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATA
CGAAGCTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCACATGCTAGGCTCAG
GCATGTGTTGGAGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTG
ACCGTCGATATAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGG
TGCTGGTACCTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAGTGTCTAAAATGGGGACAC
ATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTACGAAAAAATTTTAAA
AAATCCCGAACAGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTACCGAAACCCACCTAACACCCTATCGATCCACGGCTTGCACATCCCAT
CTCTCTGGCCGACATAGTGCACGC
Found at i:13979182 original size:26 final size:26
Alignment explanation
Indices: 13979152--13979204 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13979142 GTTGTCTTAG
*
13979152 GCATACAAAGTTCATTCTAAGTCTAA
1 GCATACAAAGTTCATTCCAAGTCTAA
** *
13979178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCAAGTCTAA
13979204 G
1 G
13979205 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCAAGTCTAA
Found at i:13979279 original size:79 final size:80
Alignment explanation
Indices: 13979142--13979303 Score: 254
Period size: 79 Copynumber: 2.0 Consensus size: 80
13979132 CGTTACGTGT
* *
13979142 GTTGTCTTAGGCATACAAAGTTCATTCTAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACAAAGTTCATTCTAAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGAT
*
13979207 CGGACCGGACCGAGG
66 CGAACCGGACCGAGG
* * *
13979222 GTTGACTTAGGCATTCGAAGTTCATTC-CAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACAAAGTTCATTCTAAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGAT
*
13979286 CGAACCGGACTGAGG
66 CGAACCGGACCGAGG
13979301 GTT
1 GTT
13979304 ATGGAAGGAC
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
79 51 0.68
80 24 0.32
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (80 bp):
GTTGACTTAGGCATACAAAGTTCATTCTAAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGAT
CGAACCGGACCGAGG
Found at i:13980165 original size:26 final size:26
Alignment explanation
Indices: 13980129--13980181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13980119 GTTTACTTAG
13980129 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
13980155 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13980181 G
1 G
13980182 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:13981066 original size:26 final size:26
Alignment explanation
Indices: 13981026--13981081 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13981016 TTGGTTTACT
*
13981026 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
*
13981052 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
13981078 TAAG
1 TAAG
13981082 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:13981097 original size:900 final size:900
Alignment explanation
Indices: 13979221--13982949 Score: 4703
Period size: 900 Copynumber: 4.2 Consensus size: 900
13979211 CCGGACCGAG
* *
13979221 GGTTGACTTAGGCATTCGAAGTTCATT-CCAGTCTAAGCATACCG-AGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAAGTTCATTCCCAGTCTAAG
* * ** * * *
13979284 ATC-GAACCGGACTGAGGGTTATGGAAGGACATGCTGGGCTCGCGCATGTGCTGGTGCCGCATTT
65 ATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* ** * * *
13979348 TTCTTCG-CAGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCA
129 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
13979412 AGGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTAC-TTGTTCCTTA
194 ACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTG-CCCTTA
* * *
13979475 TATTGGCCCCCTATCCCTTATCAAACCTCGAGAAATCACACCCCTTAAAGAGCATTTGAGATTTT
258 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTT
*
13979540 ATAGGTTTGCTGCCAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
13979604 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-TCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
13979668 CATCTATCATGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAGA
453 CATCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAA-A
* * *
13979733 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTCCACGTGAAA-GCTTA
517 ATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-AAAGGCTTA
*
13979797 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTG
581 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTG
* *
13979862 CCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
646 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGT
* *
13979927 GCTCGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
711 GCCCGCCCACCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
* * * *
13979992 CTAAGATCGAACTAGACCGAGGGTTGCAGTAGCAGGATCGGCAACACACAAAGGGGGACCCGGCC
775 CTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACTCAAAGGGGGACCCGGCC
* * * * * *
13980057 GATCCCAGGCTTGCGCTTCCTACCCCTCTGGCCGGGTGAGTGCTCGCACGCTCGTTTCGTT
840 GATCCCAGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
* * * *
13980118 GGTTTACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * **
13980183 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCAAATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
13980248 CTTCGTCGGTGCACCATCGTCGGAGCATCGCCGAAAAACCTGACAGACGGCGTTGGGGTTCCGAC
131 CTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
13980313 GATCGGGGGGGTC-GGGGGTGTGCGTACATTATGTGCGATGGGTGCTGGTACTTTGCCCTTGTAT
196 GATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATAT
* * *
13980377 TGGCCCCCTA-CCACTCATCAAACCTTGAGAACTCACCCCCCCTAAAGAGCGTTTGAGATTTTAC
261 TGGCCCCCTATCC-CTCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTAC
* *
13980441 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAA
325 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * **
13980506 TCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-CCTGCCAAAAAAAATACAAGGATCAGG
390 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACA
* * * * * * * *
13980570 TCTACCAAGTTTGGGTCCAAAACTACTTTCAAAAAAATTTTAAAAATTCTCGGATTGCAAAACAT
455 TCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAA-AT
*
13980635 TTCAAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGG
519 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGG
13980700 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCT
584 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCT
* * * * *
13980765 AAACCCACCTACCACCCTATTGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCT
649 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTGCC
* * *
13980830 CGCCCACCCGCCTGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
714 CGCCCACCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * * *
13980895 AGATAGGACCAGACTGAGGGTTGCAGCAGCAGGATCGCCAGCACTCAGAGGGGGACCCGACCAAT
778 AGATCGAACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACTCAAAGGGGGACCCGGCCGAT
* * * * ** *
13980960 CCTAGGCTTGCGCATCCTGCCCTTCTAGCCGGCTGAGTGCTTGCACGCTCGTTTCGTT
843 CCCAGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
* * *
13981018 GGTTTACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* ** * *
13981083 TCAGACCAGACCGAGGGTTACGATAGCACATGCTGGG-TCGGGCATGTACAGGTGCCGCATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
13981147 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCGTTGGGGTTCC-AG
131 CTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGA-
* * * * *
13981211 CGATCGGAGGGGTCGGGGGGGTGTGTGCACATGATGTGCAACGGGTGCTGGTACTTTGCCCTTGT
195 CGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTAT
* * * *
13981276 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACACCCTTAAAGAGCATTTGGGATTTT
259 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-ACCCCCCTTAAAGAGCATTTGAGATTTT
* *
13981341 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
13981406 AATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * * * * * *
13981471 CGTATACCAAGTTTTGGGCCAAAAGTCCTTCCGAAAAAAGTTTAAAAAATC-CTGACCCGT-AAA
453 CATCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACTGTAAAA
* *
13981534 A--TC------C--------T-------GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGA
517 ATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAA
* *
13981576 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACACAGAAATATGAAGATGTGC
582 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGC
* * *
13981641 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTATGGCC-ACCTTAAT
647 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGA-CGTAGT
* * * **
13981705 GCCCGCCCGCCCACACGCCCGCTCGTTAT-GTCGGTTGGCTTAGGCATACGAAGTTCATTCATAA
711 GCCCGCCCACCCGC-CGCCCGCTCGTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAA
* ** * * * * *
13981769 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCCA-GATCGACAGCACGCAGAGGGGGACCTGG
774 TCTAAGATCGAACCAGACCGAGGGTTGCAGCAG-CAGGATCGGCAGCACTCAAAGGGGGACCCGG
* * * * * * * * * * * *
13981833 TCGATCCCCGGCTTGCACGTCCCGCCCTTTTGGTCGGTTAAGCACCCGCACGCTCGTTCCGTG
838 CCGATCCCAGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
* *
13981896 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * *
13981961 TCAAACTAGACAGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
*
13982026 CTTCG-CGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGG-TCCGGA
131 CTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCC-GA
* ** * *
13982089 -GATC---AGGG-CGGCTGG-G-G-G-----G-TGTGCGATGGGTGCTGGTTCTTGGCCCTTATA
195 CGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATA
* *
13982140 TTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
260 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTA
*
13982205 CAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
13982270 AACTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCAC
389 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** * * *
13982335 ATCTACGAAGTTTGGGGAAAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGTAAAAAG
454 ATCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAA-
* * * * *
13982400 TTTCAAAATTTATGAAAAATAGAAAAAGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
518 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAG
*
13982465 GGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACAT-AGAAATATGAAGATGTGC
583 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAATATGAAGATGTGC
* * * * **
13982529 CTAAACCCACCCACCACCCTATCGATCCACGGCTTGCACATCCCGTCTTTATGGACGGTGTAGTG
647 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTG
* * *
13982594 CCCG-CC-CTC-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
712 CCCGCCCACCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCT
* * ** * * * * *
13982656 AAGATTGAACCGGATTGAGGGCTGCTA-TAGAAGGATCGGCAGCA-TGCAAAGGTGGACCCGGTC
777 AAGATCGAACCAGACCGAGGGTTGC-AGCAGCAGGATCGGCAGCACT-CAAAGGGGGACCCGGCC
* **
13982719 GATCCCCA-GCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTCCGCA
840 GAT-CCCAGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
* *
13982780 GGTTGACTTAGGCATCCGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * *
13982845 TCGGACCAGACC-AAGGTTGCGACAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
66 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
13982909 CTTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAACCT
131 CTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCT
13982950 AACCAGCGAA
Statistics
Matches: 2469, Mismatches: 301, Indels: 137
0.85 0.10 0.05
Matches are distributed among these distances:
862 1 0.00
863 253 0.10
864 6 0.00
867 2 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 4 0.00
873 1 0.00
874 3 0.00
877 8 0.00
878 444 0.18
879 33 0.01
881 1 0.00
883 54 0.02
884 232 0.09
885 4 0.00
886 2 0.00
887 2 0.00
888 155 0.06
893 1 0.00
897 25 0.01
898 95 0.04
899 283 0.11
900 588 0.24
901 76 0.03
902 127 0.05
903 66 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGAC
GATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACAT
CTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAATTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTGCCCG
CCCACCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
TCGAACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACTCAAAGGGGGACCCGGCCGATCCC
AGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTT
Found at i:13981936 original size:26 final size:26
Alignment explanation
Indices: 13981907--13981959 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13981897 GTTAACTTAG
13981907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13981933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13981959 G
1 G
13981960 ATCAAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13982820 original size:26 final size:26
Alignment explanation
Indices: 13982791--13982843 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13982781 GTTGACTTAG
*
13982791 GCATCCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13982817 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13982843 G
1 G
13982844 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13984427 original size:26 final size:26
Alignment explanation
Indices: 13984391--13984443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13984381 GTTGACTTCG
13984391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13984417 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13984443 G
1 G
13984444 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13985344 original size:888 final size:891
Alignment explanation
Indices: 13982958--13986922 Score: 5148
Period size: 888 Copynumber: 4.5 Consensus size: 891
13982948 CTAACCAGCG
* * *
13982958 AAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATG
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* **
13983023 ATGTCTACCAAGTTTGGGGCCAAAACATTTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACCCTTT-TGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
* * * *
13983088 AGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTA
130 AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTA
* * * *
13983153 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAACTTTGAAGATGTG
195 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * *
13983218 CCTAAACCGACCTACCATCCTATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
260 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * *
13983283 ACCCGCCCGCCCACCCGGCCGCTCGATTCTTTCGTCGGTCGGCTTAGGCATGCGGAGTTCATTCC
325 GCCCGCCCG-CCACCCGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
13983348 TATTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCC
385 CAGTCTAAGATCAGAC-GGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCC
* * * ** ** * *
13983413 GGTCGATCCCCGACTGGCGCATCATGCCCCTCTGGCCGGCTGAGCGGCCGCACACTCATTTCGTG
449 GGCCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATG
13983478 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAG
514 GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAG
* * * * * *
13983542 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCACATTTT
578 ATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTT
* * ** *
13983607 TCTTCACCGAGGCACCATCACTGGAGCATCA-CTGGAGAACCTGACCGACGGCATTGGGGTTCCA
643 TCTTCATCGGGGCACCATCGTTGGAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTCCG
*
13983671 ACGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
707 ACGATCGGGGGGGCCGGGGGGTG-T-G---ATGA-GTGCGA---GTGCTGGTACTTGGCCCTTAT
* * *
13983736 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAGGAGCATTTGAGATTTT
763 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
13983801 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
828 ACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
*
13983865 AAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * **
13983930 ACGTCCACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAAATTTTAAAAAAT-CTCGAACCATAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACCCTTTTG-AAAAAATTTTAAAAAATCCT-GAACCGCAAA
* * * * *
13983994 AAGTTTCAAAAATCATGAAAAATAGAAAAACGAGTCGTCTGGCCATGAAACTTCAGGTGAAGGCT
129 AAGTTTTAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCT
*
13984059 TAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
193 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
13984124 TGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTAGTCGGCGTA
258 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
13984188 GTGCCCACCCGCCTACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
323 GTGCCCGCCCGCC-ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * * *
13984253 GTCTAAGATTGGACTAGACCAAGGGTTAT-GCGGCAGGATCGGCAAAACGTAGAGGGGGACCCGA
387 GTCTAAGATCAGAC-GGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGG
* * * * * * *
13984317 TCGATGCTCGACTTGCACATCCCGCCCATCTGGTCGGCTGAGCATCCGCACGCTCATTTCGTGGG
451 CCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGG
* * * *
13984382 TTGACTTCGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
516 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * ** * *
13984447 AGACCGGACCGAGGGTTACGACAGCACATGCTGGACTTGGGCATGTGCTGCTGCTGCACTTTTCT
581 AGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCT
* * *
13984512 TCATCGGGGCACCATCGTTGGAGCATCATCGGAGAACCTAATCGGCGGCATTGGGGTTCCGACGA
646 TCATCGGGGCACCATCGTTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
13984577 TC-GGGGGGCCGGGGGGTGTG-TGA-TG-GA-TGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
711 TCGGGGGGGCCGGGGGGTGTGATGAGTGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
13984637 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
776 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
* *
13984702 CAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCTAATGGTCACA
841 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* *
13984752 AAATCTTGTACA-TATCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
1 AAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* *
13984816 CACATCTACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAATCCTGAACCGTAAA
65 CACGTCTACCAAGTTTGGGGCCAAAA-CCCTTTTGAAAAAATTTTAAAAAATCCTGAACCGCAAA
* *
13984881 TAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTT
129 AAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTT
* *
13984946 AAGGGACCATTGTATGAATTTGCAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGT
194 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * * * *
13985011 GTCTAAGCCCACCTCCCACACTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGGCATAG
259 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
13985076 TGCCCGCCCGCCTGA-CCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
324 TGCCCGCCCGCC--ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
13985140 GTCTAAGATCAGATCGGACCAAGGGTTGTAGCAACAGGATCGACAACACGCAGAGGGGGACCCAG
387 GTCTAAGATCAGA-CGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGG
* * * * *
13985205 CCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTGATCACCCACACGCTCGTTTCATGGG
451 CCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGG
* * *
13985270 TTGACTTAGGTATATGGTGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCGAAGATC
516 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * *
13985335 AGACCGGACCGAGGGTTGTGGCACCACATGCTGGGCTCAGGCTTGTGCTGGTGCCGCACTTTTCT
581 AGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCT
* ** * * *
13985400 TCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGACATTGCGGTTCCGACGA
646 TCATCGGGGCACCATCGTTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
13985465 TC-GGGGGGCCGGGGGGTGTG-CGA-TG-G-GTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT
711 TCGGGGGGGCCGGGGGGTGTGATGAGTGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
13985525 CCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
776 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
13985590 CAGTAGCCATTAAAGTGTCTAAAATGGGG-CACTTTTTTCAAATGGTCACA
841 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* *
13985640 AAAACTTGTACA-TATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGAT
1 AAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
** *
13985704 CACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTTAAAAAATCCCGAACCGCAA
65 CACGTCTACCAAGTTTGGGGCCAAAAC-CCTTTTGAAAAAA-TTTTAAAAAATCCTGAACCGCAA
* * *
13985768 AAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGACT
128 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCT
*
13985833 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATG
193 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * * *
13985898 TGTCTAAGCCCATCT-CTCACCCTATTGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGACGT
258 TGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
13985962 AGTG--C-CCAGCCACCCGCCCGCTCGTTGCGTCGATTGGCTTAGGCATACGGAGTTCATTCGCA
322 AGTGCCCGCCCGCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
13986024 GTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGG
387 GTCTAAGATCAGA-CGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGG
* * * * * *
13986089 CGGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTAAGCACCCGCACGCTCATTT--T--G
451 CCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGG
*
13986150 -TG-----GG--T-T-GA---C--T--CAG-----GCATACGAAGTTCATTCCCAGCCTAAGATC
516 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * ** * * *
13986193 AGATCGGACCGAGGGTTGCGATAGTAGATGCTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCT
581 AGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCT
* * * * * * *
13986258 TCGTTGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCAA
646 TCATCGGGGCACCATCGTTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
13986323 TCGGGGGGGCCGGGGGGTGAGCGCACATGATGTGCGATTGGCGCTGGTACTTGG-TCTTATATTG
711 TCGGGGGGGCCGGGGGGT--GTG---ATGA-GTGCGA---GTGCTGGTACTTGGCCCTTATATTG
* * * *
13986387 GCCCCCTATCCCTCATCAATCCTCGAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTATAG
767 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
* *
13986452 GTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
832 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* *
13986512 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATG-CAAACAAAAATACAAGGAT
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGAT
* * *
13986576 CACGTTTACCAAGTTTGGTGCCAAAACTCTTTTCGAAAAAATTTTAAAAAAT-CTCGAACCGCAA
65 CACGTCTACCAAGTTTGGGGCCAAAACCCTTTT-GAAAAAATTTTAAAAAATCCT-GAACCGCAA
* * * * * *
13986640 AAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATAGAACTTCACGTAAAGGCT
128 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCT
* **
13986705 TAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
193 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
**
13986770 TGCCTAAACCCACCTACCACCCTATCGATCCATTGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
258 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * *
13986835 GTGCCCGCCCG---CCCGCTCGCTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCAAG
323 GTGCCCGCCCGCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
13986897 TCTAAGATCAGACCGGA-CAGAGGGTT
388 TCTAAGATCAGA-CGGACCA-AGGGTT
13986923 ACGATAGTAG
Statistics
Matches: 2714, Mismatches: 301, Indels: 121
0.87 0.10 0.04
Matches are distributed among these distances:
858 136 0.05
859 15 0.01
861 2 0.00
863 3 0.00
865 3 0.00
867 3 0.00
868 1 0.00
870 1 0.00
871 113 0.04
872 375 0.14
873 8 0.00
874 3 0.00
875 3 0.00
879 2 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 152 0.06
885 5 0.00
886 105 0.04
887 290 0.11
888 842 0.31
892 2 0.00
893 2 0.00
895 3 0.00
899 1 0.00
900 1 0.00
901 16 0.01
902 252 0.09
903 57 0.02
906 5 0.00
907 204 0.08
908 106 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACCCTTTTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
CCCGCCCGCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGGCCGAT
CCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGAC
TTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
GGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCTTCATC
GGGGCACCATCGTTGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGGCCGGGGGGTGTGATGAGTGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
Found at i:13987857 original size:26 final size:26
Alignment explanation
Indices: 13987828--13987880 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13987818 GTTAACTTAG
*
13987828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
13987854 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
13987880 G
1 G
13987881 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:13989220 original size:711 final size:711
Alignment explanation
Indices: 13987854--13989314 Score: 2124
Period size: 711 Copynumber: 2.0 Consensus size: 711
13987844 CCCAGTCTAA
* * * *
13987854 GCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGATCGAGAGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTA-GGCAGCACATGCTGGG
* ** * * **
13987919 CTCAGGCATGTGTTAGTGCCACATTTTTCTTCGTCAGGGTACCATCACCAGATCATCGTCGGAGA
65 CTCAGGCATGTGTTAGTGCCACATTTTTCTCCACCAGGGCACCATCACCAGAGCATCACCGGAGA
* * * *
13987984 ACCTCATCGACGGAACTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACCTGATGTG
130 ACCTCACCGACGGAACTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGTGTGCGCACATGATGGG
*
13988049 TGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCAC
195 TGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
* *
13988114 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
13988179 GGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTA
* ** *
13988244 TGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGCTTGGGGCCAAAACTCTGTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGCGGCCAAAACTCTGTTCAAAAAA
* ** *
13988309 ATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAGAATTGTGAAAAATAGAAAATGAGTAATCTT
455 ATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAATCTT
* *
13988374 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCA
520 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTCTATGAATTTACAAGTGATAAAAATGGCA
* **
13988439 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
13988504 CATCCCGTCTCTCTGGCCGGAGTAGT-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGGAGTAGTCGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAG
* * *
13988565 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCTAAG-GTT-GGAACTGCAGATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGAGTTAGG--CAGCACATGCTG
* * * * * * *
13988628 GGTTCAGGCATGTGTTGGTGTCACATTTTTCTCCACCAGTGCACCATCGCCGGGGCATCACCGGA
63 GGCTCAGGCATGTGTTAGTGCCACATTTTTCTCCACCAGGGCACCATCACCAGAGCATCACCGGA
* ** * *
13988693 GAACCTGACCGGGGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGCGGTGTGCGCACATGATG
128 GAACCTCACCGACGGAACTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGTGTGCGCACATGATG
* *
13988757 GGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 GGTGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTC
*
13988822 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * *
13988887 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAA-TTTTT
* * * * *
13988952 TTGTGCATGCCAACAAAAATACAAGTATCACATCTACCAAGTTTGCGGCCAAAACT-TTTTCTGA
387 TTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGCGGCCAAAACTCTGTTC-AA
* * **
13989016 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGG
451 AAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAA
*
13989081 TCTTGCCATGAAACTTCACGTGAACGCTTAAGGGATCATTCTATGAATTTACAAG-GCATAAAAA
516 TCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTCTATGAATTTACAAGTG-ATAAAAA
13989145 TGGCATTGGCATGCAGAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCACGGC
* * *
13989210 TTGTGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCACCAGCCCGCCCGCCCGCTCATTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGAGTAGT------C-GCCCGCCCGCCCGCTCATTTCGTCGG
13989275 TTAGCTTAG
703 TTAGCTTAG
*
13989284 GCATACGAAGTTCATTCCCAGTCTAAGATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA
13989315 AACCGGACTG
Statistics
Matches: 665, Mismatches: 71, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
709 2 0.00
710 211 0.32
711 389 0.58
712 2 0.00
719 61 0.09
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTAGGCAGCACATGCTGGGC
TCAGGCATGTGTTAGTGCCACATTTTTCTCCACCAGGGCACCATCACCAGAGCATCACCGGAGAA
CCTCACCGACGGAACTGGGGTTCCGACGATCGGGGGGGCCGGGGCGGTGTGCGCACATGATGGGT
GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGCGGCCAAAACTCTGTTCAAAAAAA
TTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAATCTTG
CCATGAAACTTCACGTGAACGCTTAAGGGACCATTCTATGAATTTACAAGTGATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGAATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGAGTAGTCGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAG
Found at i:13990370 original size:26 final size:26
Alignment explanation
Indices: 13990320--13990371 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13990310 GTTGAGTTAG
* * *
13990320 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCACTCTAA
*
13990346 GCATACGGAGCTGATTCCCACTCTAA
1 GCATACGGAGCTCATTCCCACTCTAA
13990372 AATCGGATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCACTCTAA
Found at i:13990882 original size:878 final size:887
Alignment explanation
Indices: 13989440--13994995 Score: 6833
Period size: 901 Copynumber: 6.2 Consensus size: 887
13989430 TGGGTTGACT
* * * *
13989440 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGCTTGTGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * * * * *
13989505 GGGCTTGGGCATGTGGTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGATCATC-GCAG
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCA-
*
13989569 GAGAACGTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACGTGAT
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-----GTGTGCG-A---GAT
* * * *
13989634 GTACGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
185 GT--GGT-GGTG-TCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
13989699 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCGGTAGCCATTAAAGTGTTTGA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
13989764 AATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGAACACTTCAAGTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
13989829 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
13989894 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGT
441 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
13989959 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
13990024 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
571 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** **
13990089 GCGCATCCCGTCTCTCTGATCGGTATAGTGCCCGCCCGCCCGCACGCTCGCTCGTTTCGTCGGTT
636 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CGCTCGCTCGTTTCGTCGGTT
** * * *
13990154 GGCTTAGGCATACGGAGTTCATTCGAAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAACAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGG
* *
13990219 ATCGATAGCACGTAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
765 ATCGACAGCACGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
13990284 TGAGCGCCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCTAGTC
829 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
13990343 TAAGCATACGGAGCTGATTCCCACTCTAAAATCGGATCAGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
*
13990408 GGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAG
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAG
* * *
13990473 AGAACCTGACTGGCGGCATTGGGGTTTCGACGATCGGGGGG-C-TG-G-G-GA-G-GGT-GT-TC
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGTGTGCGAGATGTGGTGGTGTC
* * * * * *
13990529 GCACAT-G-ACTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCTCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
13990592 AGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
13990657 TTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
13990722 AAAATACAAGGATCACATCTACCAAGTTTGTGGCCACAACTCTTTCCGAAGAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
13990787 CCCAAACCG-AGAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
456 CCCAAACCGCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
13990851 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
13990916 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
13990981 TCTGGCCGGCATAGTGCCTGCCCGCCCG-C-CT-GCTTGTTTCATCGGTTGG-TTAAGGCATACG
650 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGCTCGTTTCGTCGGTTGGCTT-AGGCATACG
* * *** ** * ** * * * *
13991042 GAGTTCATTCCCAATCTAAGA-TCGAATGGAACCAAGGGTTACGATAACAGGATCGGCACCAC-A
714 GAGTTCATTCCCAGTCTAAGATTAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * *
13991105 AGAGGGGGACCTGGCCAATCCCCGGATTGCGCATCCTGCCCCTCTGGCCGACGGAGCGCCGGCAC
778 AGAGGGGGACC-CGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
*
13991170 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
842 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
13991216 TAAGCATACGAAGTTCATTACCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCCA-CACATGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCACATGC
* * * ** * **
13991280 TGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCATCATCGGAGCATCGTTG
65 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCA
* * ** *
13991345 GAGAACCTTACCGGCGGTTTTGGGGTTCCGGCGATCGGGTGGGCCGGGGGGTGTGCGCACATGAT
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-----GTGTGCG---A-GAT
* *
13991410 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACT
185 GTG-G-T-GGTG-TCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
13991475 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
13991540 AATAGAGACAATTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
13991605 TTATGCATGCCAACAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
13991670 AAAATTTTAAAAAAT-CCAGAACTAG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
441 AAAATTTTAAAAAATCCCA-AAC-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
13991733 GTCTTGCCATAAAACTTC-CTGTGAAGGCTTAAGGGACCAATTGTATGAATTTACAAGCCATAAA
504 GTCTTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAA
*
13991797 AATGGCATTGGAACAT--AGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCA
567 AATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** *
13991860 CGGCTTGCGCATCCTATCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCG-C-CT-GCTCGTTTCGT
630 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGCTCGTTTCGT
* * *
13991922 AGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGCA
695 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCA
* * * ** *
13991987 GTAGGATCGACAGCACACAGAGGGGGATCCGACAGATCCTGGGCTTGCGCATCCCACCCCTCTGG
760 GCAGGATCGACAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
13992052 CAGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTTCCACTC
824 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
13992116 TCAGCATACAGAGTTTATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
** * * ** * * *
13992181 ATGCTCGAGCATGTGCTGGTGCCACCTTTTTCTTCACCGGGGCACCATCGCCGAAGCATCACCAA
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAG
* *
13992246 AGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGCGGCCGGGGGGGTGTGCGCAGATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCC------GTGT--GC-GA-GAT
* *
13992311 GTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
185 GTG-G-T-GGTG-TCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
13992376 CACA-CCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
13992440 AATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
13992505 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCCCAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
13992570 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
441 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
13992635 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
13992700 GCATTGGCATGCAGAAGTATGAAG-TGTGCCTAAACCCACCTACCACCGACTTCTCTTTCCACGG
571 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC--C-TATCGATCCACGG
* * * * * *
13992764 CTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCACCCGCTCGTTTTGTCG
633 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGCTCGTTTCGTCG
* * * * *
13992829 GTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGA-TAGGA-TAGACCGAGGGTTGCGGGAG
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCAGACTGAGGGTTGCGGCAG
* * ** * * * * **
13992892 CAAGATCGACAGCATGC-GAAATGGGACCCGACCAATCCTCGGCTTGTGCTTCCCGCCCCTCCAG
761 CAGGATCGACAGCACGCAG-AGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
13992956 CTGGCTGAGCGCCCACACGCTCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTC
824 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
13993020 TAAGCATACGGAGTTCATTCCCAGTCTCAGATCGAACCAGACTGAGGGTTACGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* *** * * **
13993085 GGGCTCGGACATGTGCTGGTGCTTTATTTTTCTTTGTGGGGGCACCATCATCGGAGCATCA-CTA
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATC-A
** * *
13993149 GAGAACCTGACCGACAACATTGGGGTTCCGACGATGGGGGGGGCGGAGGGGGTGTGCGCACATGA
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGGGGGGC------CGTGTGCG---A-GA
* * *
13993214 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
184 TGTG-G-T-GGTG-TCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * * *
13993279 TCACACCCCCTTGAGGAGCATTTGAGATTTTATAGGTTTGCTGCTAATAGCCATTAAAGTGTGTG
245 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
13993344 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTT
310 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * *
13993409 TTCATGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
375 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
13993474 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
440 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
13993539 TCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAAT
505 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * *
13993604 GGCATTGGCACATAGAAATATGAAGGTGTGCCTAAACCCACCTACCACTCTATCGATCCACGACT
570 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * *
13993669 TGTGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGGCCGCCTAC-CCG-TCCGCTCGTTTCCTCG
635 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CGCCGCT-CGCTCGTTTCGTCG
* * * * ** **
13993732 GTTGGCTTAGGCATACAGAGTTCATTCCTAGTATAAGA-TCGAACCAGACTGAGGGTTATGATAG
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACTGAGGGTTGCGGCAG
* * * * * * * *
13993796 CAGGATTGGCAGCACACAGATGGGGACCCAACTGATCCCCTG-TTGTGCATCCTGCCCCTCTGGC
761 CAGGATCGACAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
13993860 CGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTC
825 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * * * **
13993923 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGCTTGCGACAATACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* ** **
13993988 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTAGGAGCATCGCCAG
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAG
* * *
13994053 AGAACCTGATCGACGGCATTGGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-----GTGTGCG---A-GATGT
13994118 GCGGTGG-GTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
187 --GGTGGTGT-C--GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
13994182 ACTCCCCCTTAAAGAGCATTTCAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
13994247 ATGGGAACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
13994312 TATGCATGCCAACAAAACTACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAA
377 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
13994376 AAATTTTAAAAAAT-CCAGAACAAG-AAAAAATTTCAAAAATCGTGAAAAATAGAAAAACGAGTC
442 AAATTTTAAAAAATCCCA-AAC-CGCAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTC
*
13994439 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAA
504 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
13994504 TGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGC
569 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
13994569 TTGCGCATCCCGTCTCTCTCACCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTGTCGTCGG
634 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCTCGCTCGTTTCGTCGG
* * * ** * *
13994634 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTACAGCAAACCAAGGGTTGCGGTAGTA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCA
* *
13994699 GGATCAACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
763 GGATCGACAGCACGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* ** * * *
13994764 GCTGAGCGGTCGCACGCTCGTTTCGCGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTC
827 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * * * *
13994825 TAAGCATATGGAGTTCATTCCTTGTCTCAA-ATTGGACCGGACCGAGGATTGCAGCAGCACATGT
1 TAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
*** * * *
13994889 TGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGTGGCACCATCACCGGAGCATCGTCA
65 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCA
* *
13994954 GAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGG
130 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
13994996 GCCAGAGAGG
Statistics
Matches: 4039, Mismatches: 511, Indels: 207
0.85 0.11 0.04
Matches are distributed among these distances:
873 246 0.06
874 71 0.02
875 3 0.00
876 1 0.00
877 1 0.00
878 438 0.11
879 1 0.00
880 5 0.00
881 2 0.00
882 3 0.00
883 1 0.00
884 2 0.00
887 1 0.00
888 4 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 3 0.00
895 2 0.00
896 5 0.00
897 8 0.00
898 322 0.08
899 253 0.06
900 570 0.14
901 622 0.15
902 240 0.06
903 456 0.11
904 375 0.09
905 377 0.09
906 22 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGTGTGCGAGATGTGGTGGTGTC
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
GGGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:13991230 original size:26 final size:26
Alignment explanation
Indices: 13991193--13991245 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13991183 GTTGACTTAG
* *
13991193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
13991219 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
13991245 G
1 G
13991246 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:13993033 original size:26 final size:26
Alignment explanation
Indices: 13992997--13993046 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
13992987 TTTGACTTAG
13992997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13993023 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
13993047 CAGATCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13995388 original size:25 final size:26
Alignment explanation
Indices: 13995359--13995410 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13995349 GTTGACTTAG
*
13995359 GCATACGGAGTTCATTCCCA-TCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
13995384 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
13995410 G
1 G
13995411 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:13996268 original size:26 final size:26
Alignment explanation
Indices: 13996228--13996285 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
13996218 CGTGGTTTGA
13996228 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
*
13996255 CTAAGCATATGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
13996281 CTAAG
1 CTAAG
13996286 ATCAGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:13996908 original size:890 final size:883
Alignment explanation
Indices: 13995548--13998192 Score: 3556
Period size: 902 Copynumber: 3.0 Consensus size: 883
13995538 GGGCCGGGGG
*
13995548 GGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
13995613 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
65 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
13995678 TTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
130 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
13995743 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
195 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAA
*** * *
13995808 TCTAAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
260 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
13995873 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
325 TCACGTGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * *
13995938 AAGTATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTC
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
** *
13996003 TATGGCCAACGTAGTGCCCTCCCCGCCCGTCCGCCTGCCCGCCCGTCTGCTCATTCCATCCGTTG
455 TATGGCCGGCGTAGTGCCCT-CCCGCCCG-CCGCCTGCCCG--C-TCTG-T--TT-CATCGGTTG
* *
13996068 GCTTAGGCATACGGAGTTCACTCTCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGA
511 GCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * *
13996133 TCTACAGCCCACAGAGTCGGG-CCCGGCCGATCCTCGGCTTGCGTATCCTGCCCTTCTGGCCGGT
575 TCGACAGCACGCAGAG--GGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGT
* * *
13996197 TGAGCACCCGCATGCTCGTTTCGTGGTTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAGCA
638 TGAGCACCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
13996262 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGATAGCACATACTAGGCTC
703 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTC
* *
13996327 GGGCAGGTGCTGGTGCTGCACTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGATCGGCATC
768 GGGCATGTGCTGGTGCTGCACTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGA-CGGCAGC
13996392 ATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGT-G-C-G-ATGGGTGCT
832 ATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTCGACTGAATGGGTGCT
* *
13996440 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACTCCCCCTTAAAG
1 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
13996505 AGCATTTGAGATTTTATATGTTTGCTGCCAATAGCTATTAAAGTGTCTGAAATGGTGACACTTTT
66 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
13996570 TTCAAATTGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
131 TTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
13996635 AAAATACAAGGATCACGTCTACCAA-TTTCGGGCCAAAACTCCTTTCGAAAAAATTTTAACAAAT
196 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAAT
* *
13996699 CCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
261 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
13996764 CACGTGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGA
326 CACGTGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
13996829 AATATGAAGATGTGCCTAAACCCACCTACCAACGTATCGATCCACGGCTTGCGCATCTCATCTCT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
* * * *
13996894 CTGGCCGGCGTAGTG----CCCG--C-CCGCCTGCCCGCTC-GTTTCGTAGGTTGGCTTAGGTAT
456 ATGGCCGGCGTAGTGCCCTCCCGCCCGCCGCCTGCCCGCTCTGTTTCATCGGTTGGCTTAGGCAT
** * * * *
13996951 ACGGAGTTCATTCCCAGTCTAAGATGGGACCAGACCGACGGTTGTGGTAGCAAGATCGACAGCAC
521 ACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * ** * *
13997016 GTAGAGGGAGACCCGACAGATCCTAGGCTTGCGCATCCCACCCCTCTGGCCGACTAAGCGCCTGC
585 GCAGAGGG-GACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCACCTGC
* * * * * * *
13997081 ATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCTTTCCTAGTCTAAGCATGCAGAGTTCT
649 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
13997146 TTCCCAGTTTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT
714 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCT
*
13997211 GGTGC--CACCTTTTTCTTCACCTGGGCACCATCTTCGGAGCATCGTCGGAGAACCTGACCGGCA
779 GGTGCTGCA-C-TTTTCTTCACCGGGGCACCA---TC---G---C--CGGAGAACCTGA-CGGCA
* *
13997274 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
830 GCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGT-CG-AC------TG-AATGGGTGCT
*
13997336 GGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAA
1 GGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
13997401 GAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
65 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
13997466 TTTCAAATGGTCACAAAATCTTGCACACTTAGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAC
130 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
13997531 AAAAATACAAGCATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAA
195 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAA
13997596 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
260 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
13997661 TCACATGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAGAATGGCATTGGCATTCAG
325 TCACGTGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
13997726 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCTACGGCTTGCGCATCCCATGTC
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* * *
13997791 TTTGGTCGGCGTAGTGCCCGT-CCGCCCG-C-CC-GCCCGCT-TGTTTCATCGGTAGGCTTAGGC
455 TATGGCCGGCGTAGTGCCC-TCCCGCCCGCCGCCTGCCCGCTCTGTTTCATCGGTTGGCTTAGGC
* * * *
13997851 ATACAGAGTTCATTGCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGC
519 ATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
13997916 ATGCAGAAGGGGACTCGGTCGAT-CTCCGGCTTGCGCATCCCGCCTTTTTGGCCCGTTGAGCACC
583 ACGCAG-AGGGGACCCGGCCGATCCT-CGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCACC
* * *
13997980 TGCACGCTCGTTCCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
646 TGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
*
13998045 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGACAGCACATGCTAGGCTCGGGCATGT
711 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGT
*** * * *
13998110 GCTGGTGCTGCA-TTTGTCTTTGTCGGGGCACTATCGTCGGAGAACCTGACGGACGGCATTGGGG
776 GCTGGTGCTGCACTTT-TCTTCACCGGGGCACCATCGCCGGAGAACCTGACGG-CAGCATTGGGG
*
13998174 TTCCGGTGATCGTGGGGGG
839 TTCCGGCGATCG-GGGGGG
13998193 GCGAAAACTC
Statistics
Matches: 1528, Mismatches: 177, Indels: 95
0.85 0.10 0.05
Matches are distributed among these distances:
871 4 0.00
872 2 0.00
873 246 0.16
874 3 0.00
876 3 0.00
877 1 0.00
878 2 0.00
879 2 0.00
881 11 0.01
882 1 0.00
883 17 0.01
884 35 0.02
885 5 0.00
887 1 0.00
890 228 0.15
891 219 0.14
892 20 0.01
893 6 0.00
894 1 0.00
896 35 0.02
897 181 0.12
898 234 0.15
899 2 0.00
901 5 0.00
902 254 0.17
903 6 0.00
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (883 bp):
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTATATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
ATGGCCGGCGTAGTGCCCTCCCGCCCGCCGCCTGCCCGCTCTGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
CAGAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCACCTGCAT
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGG
TGCTGCACTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACGGCAGCATTGGGGTTCCGGC
GATCGGGGGGGCCAGGGGGTGTCGACTGAATGGGTGCT
Found at i:13997135 original size:26 final size:26
Alignment explanation
Indices: 13997106--13997158 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13997096 GTTGACTTAG
*
13997106 GCATAC-GAAGTTCTTTCCTAGTCTAA
1 GCATACAG-AGTTCTTTCCCAGTCTAA
* *
13997132 GCATGCAGAGTTCTTTCCCAGTTTAA
1 GCATACAGAGTTCTTTCCCAGTCTAA
13997158 G
1 G
13997159 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCTTTCCCAGTCTAA
Found at i:13998037 original size:26 final size:26
Alignment explanation
Indices: 13998008--13998060 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13997998 GTTGAGTTAG
13998008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13998034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13998060 G
1 G
13998061 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13999988 original size:26 final size:26
Alignment explanation
Indices: 13999946--13999996 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13999936 AAAATCCCTT
*
13999946 CGAAAAAATTTTAAAAAATCCTGAAC
1 CGAAAAAAGTTTAAAAAATCCTGAAC
* *
13999972 CGAAAAAAGTTTCAAAAATCGTGAA
1 CGAAAAAAGTTTAAAAAATCCTGAA
13999997 AAATATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (26 bp):
CGAAAAAAGTTTAAAAAATCCTGAAC
Found at i:14000426 original size:25 final size:26
Alignment explanation
Indices: 14000375--14000426 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14000365 GGTTTACTTG
14000375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14000401 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14000426 G
1 G
14000427 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14005537 original size:26 final size:26
Alignment explanation
Indices: 14005480--14005537 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
14005470 CGTGGGTTGA
* *
14005480 CTTAGGCATACAGAGTTCATTCCTAG
1 CTTAAGCATACAGAGTTCATTCCCAG
*
14005506 -TCTAAGCATACGGAGTTCATTCCCAG
1 CT-TAAGCATACAGAGTTCATTCCCAG
14005532 CTTAAG
1 CTTAAG
14005538 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 25 0.93
27 1 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAAGCATACAGAGTTCATTCCCAG
Found at i:14006417 original size:26 final size:26
Alignment explanation
Indices: 14006381--14006433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14006371 ATTGACTTAG
*
14006381 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14006407 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14006433 G
1 G
14006434 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14007309 original size:26 final size:26
Alignment explanation
Indices: 14007273--14007325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14007263 ATTGACTTAG
*
14007273 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14007299 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14007325 G
1 G
14007326 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14007525 original size:892 final size:894
Alignment explanation
Indices: 14004752--14011830 Score: 8794
Period size: 903 Copynumber: 8.0 Consensus size: 894
14004742 CCTGATCGGT
* * * *
14004752 GGCATTGGGGTCCCGACTATCGGGGGGCCCGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
14004817 GGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
14004881 GTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* **
14004946 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCATC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* **
14005011 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCCAAAACTCCTGCCGAAAAAATTTTAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTTCGAAAAAATTTTAAAAA
* *
14005076 ATC-CTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
325 ATCTC-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
14005140 -TATCACGTGAAGGTTTAAAGGACCATCGTATGAATTTAAAAGCCAATAAAAATGGCATTGGCAT
389 CT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCAT
* * *
14005204 ACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
452 GCAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
14005269 TCTCTCTGGACGGCGTAGTGCCCG----CCCGTCCGTCCGCTCGTTTCGTCGGTTGG-TTAGGCA
516 TCTCTCTGGCCGGAGTAGTGCCCGCCCTCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
14005329 TACGGAGTTCAATCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAAGATTGGCAGCA
580 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCA
* * ** * * *
14005394 CGCT-GAGGGGGACCC-GACTGATCCCCGGCTTACGTATCCCACCCCTCTGACCGGCTGAACGCC
645 CG-TAGAGGGGGACCCGGTC-GATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACC
* * * * *
14005457 TGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGT
708 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
14005522 TCATTCCCAG-CTTAAGATCGGACCAGACAGAGGGTTGCGACAGCACATACTGGGCTCGGGCATG
773 TCATTCCCAGTC-TAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
** * *
14005586 TGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCCCCAGAGAACCTGACC-A
837 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C-G-GCAT---CGGAGAACCTGACCGA
14005650 GC
894 -C
** ** * *
14005652 GGCATT-GGGTTTTGGGGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGCAATGGGTGCT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
14005716 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
14005781 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
14005846 TTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
14005911 AAAAAT-CATGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
*
14005975 TCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACT
326 TCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
14006040 CCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCATTGGCATGCAA
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
14006105 AAATATGAAGATGTG-TGAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGCATCCCGTCTC
456 AAATATGAAGATGTGCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * * *
14006169 TCTGGCCGGCGTCGT----GCCC-CCCGCCAACCCGCACATTTCGTCAGTTAGCTTAAGCATACG
520 TCTGGCCGGAGTAGTGCCCGCCCTCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
14006229 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTTCGGTAGTAGGATCGGCAGCACGT
584 GAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTTCGGTAGCAGGATCGACAGCACGT
* * * *
14006293 AGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCTTCTAGACGGTTGAGCACCCGCAC
648 AGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
14006358 ACTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATT
713 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
14006423 CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACTTGCTGGGCTCGGGCATGTGCTGG
778 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
14006488 TGCTACATTTTTCTTCGTCGGGGCACCATC-GC-T-GGAGAACCTGATCGAC
843 TGCCACATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACCGAC
14006537 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGAGTGTGCGCACATGATGTGCGATGGGTG
1 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
*
14006601 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
14006666 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
14006731 TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
14006796 AAAAAAAT-CATGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
*
14006860 AATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAA
324 AATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
14006925 CTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCATTGGCATGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
14006990 AAAAATATGAAGATGTG-TGAAACCCACCTACCACCCTCTCGATCCACGGCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
14007054 TCTCTGGCCGGAGTCGTGCCCGCCCTCCCGCCAACCCGCACATTTCGTCAGTTAGCTTAAGCATA
518 TCTCTGGCCGGAGTAGTGCCCGCCCTCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
14007119 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTTCGGTAGTAGGATTGGCAGCAC
582 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTTCGGTAGCAGGATCGACAGCAC
* * * *
14007183 GTAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCTTCTAGACGGTTGAGCACCCGC
646 GTAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGC
* * *
14007248 ACACTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCA
711 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
14007313 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACTTGCTGGGCTCGGGCATGTGCT
776 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * *
14007378 GGTGCTACATTTTTCTTCGTCGGGGCACCATC-GC-T-GGAGAACCTGATCGGC
841 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACCGAC
14007429 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGAGTGTGCGCACATGATGTGCGATGGGTG
1 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
*
14007493 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
14007558 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
14007623 TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTACCTGAATTTTTTTGTGCATGCAA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
14007688 AAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCGTTCCGAAGAAATTTTAAAA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
* * *
14007753 AATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
324 AATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
14007818 CTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
14007883 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCAT-CCGTC
454 AGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
14007947 TCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTTTCCCGCTCGTTTCGTCGGATGGCTTACGCAT
518 TCTCTGGCCGGAGTAGTGCCCGCCCTCCCGCC--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
14008012 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTG-GGGTTGCAGCAGTAAGATCGACAGC-C
581 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCAC
* * * * * * * * * *
14008075 TGCAGAAGGGGA-CCTGCCTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCC
646 -GTAGAGGGGGACCCGGTC-GATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCC
* *
14008139 G--CA--CG-TTC----GTT---TT--G--T--GG-GTTGA----CA---TAGGCATACGGAGTT
709 GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
14008178 CATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCCATAGCACATGCTGGGCTCGGGCATGTG
774 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * *
14008243 CTGGTGCCACATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGGC
839 CTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC-G-GCAT---CGGAGAACCTGACCGAC
14008307 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
14008372 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
14008437 GAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
14008502 TTTCAAATGGTCACAAAATCTTGTACACTTTGA--CTTTAGCTGAATTGTTTTGTGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
14008565 AAAAATACAAGGATCACGTCTA--AA--------CC---A------T--AAAAAA---TACAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* *
14008606 -C-CG---C--AAAAAGTTTCAAAAATAATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
326 TCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
14008664 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
14008729 AAATATGGAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
456 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
14008794 TTTGGCAGGCGTAGAGCCCG-CC-CGC-CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
520 TCTGGCCGGAGTAGTGCCCGCCCTCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-G
* * *
14008856 GAGTTCATTCCCAGTCTAAGATCTGACTGAACTGAGGGTTTCGGTAGCAGGATCGACAGCACAG-
584 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCAC-GT
* * * ** * * *
14008920 AAAGGGGGACCCGG-CTGATCCCCGACTTGCCCATCCTGCGCCTCTGGCCGGTTGAGCGCCCGCA
648 AGAGGGGGACCCGGTC-GATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGCA
* * *
14008984 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
712 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
14009049 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-AGCAGCATATTCTGGGCTTGGGCATGTGCT
777 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCT
* **
14009113 GGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGAAGAACCTGACCGAC
841 GGTGCCACATTTTTCTTCGTCGGGGCACCAT---C-G-GCATCG--G-AGAACCTGACCGAC
* * *
14009175 GGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTCCGATGGGTGCT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
14009239 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* * * *
14009304 GAGCATTTGAGATTTTACAGGTTTGCTACCGGTATCCATTAAAGTGTCTGAAATGGCGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
14009369 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
**
14009434 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCCAT--AAAAAAGTTTTTTAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA---TTTTAAA
* * * * ** *
14009496 AAATCCCAAACTGAAAAAAGTTTCAGAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
323 AAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
14009561 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCACAAAAATGGCATTGGCATG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
14009626 TAGAAATATGAAGATATACCTAAACCCACCAACCA-CCTAATCGATCCACGGCTTGCGCATCCCA
453 CAGAAATATGAAGATGT-GCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCG
* ** *
14009690 TCTCTCTAGCCGGCA-TAGTGCCCGCCCTCCCGCCAGCCTACTCGTTTCATCGGTTGGCTTAGGC
516 TCTCTCTGGCCGG-AGTAGTGCCCGCCCTCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** ** *
14009754 ATACGGAGTTCATTCCCCGTCTAAGATTGGACTAGACTGAGGGCTAT-GGTAGCAGGATC-AGCA
579 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-TTTCGGTAGCAGGATCGA-CA
* * * * ** * * * *
14009817 ACATGCAGAGGGGGACTCGCCCGATCCCCAGCTTGCACATCCCGCCCCTCTGGTCGGTTGAGCAC
642 GCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCAC
* *
14009882 CCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
707 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * ** * * *
14009947 TTCATTCCTAATCTAAGATCGGATGGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATG
772 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * *
14010012 TGTTGGTGCCACATTTTTCTTCGCCAGGGTACCATTGTCGGAGCATCGCCGGAGAACCTGAACGA
837 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC-G-GCAT---CGGAGAACCTGACCGA
14010077 C
894 C
* * * * *
14010078 GGCATTGGGCTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGGT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** *
14010142 GGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
14010207 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATAGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
14010272 TTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGGGCATGCCAAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
14010337 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* * * ** * * *
14010402 TCCCAAACCGTAAAAAGTTTTGAAAATCATG-AAAATAGAAAATGAGTCGTCTTGCCTTAAAACT
326 TCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
14010466 CCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* ** * * *
14010531 AAATATTAAGATGTGCCTAAAATCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCATCTT
456 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * **
14010596 TCTGGTCGGCA-TAGTGCCCGCGCGCCCGGCCGCCCGCTCGTTTCACCGGTTGGCTTAGGCATAC
520 TCTGGCCGG-AGTAGTGCCCGCCCTCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *** * * * **
14010660 GAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTAAAGAAGTAGGATTGATGGCACGT
583 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCACGT
* * * * * * *
14010725 AGAAGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCTTCTAGCCGCCTGAGCA-CCGCAT
648 AGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGCAC
* * ** *
14010789 GCTCATTTTTTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
713 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
14010854 GCCAATCTAAGATCGGAACAGGACCGAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGTTG
778 CCCAGTCTAAGATCGG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
** * * *
14010919 GTGCCGTATTTTTCTTCATCGGGGGACCATCGTCGGAGCATCGTCGGAGAACTTGACCGAC
842 GTGCCACATTTTTCTTCGTCGGGGCACCA---TC-G-GCA---TCGGAGAACCTGACCGAC
* * * * * **
14010980 TGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGTGGTTATGCATACATGATGTGCGATGGGTGC
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGC
* **
14011045 TGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * *
14011110 AGAGCATTTGAGATTTTACAGG-TTGCTTG-CAGTAGCTATT-AAGTGTCTAAAATAGGGACACT
130 AGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
14011172 TTTTTCAAATGGTCATAAAATCTTGTACACATCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * * * **
14011237 ACAAAAATACAAGGTTCACGTCTACCAAGTTCGAGGCCCAAACACC-TACTAAAAAAATTTTTCA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAA
* * * * * *
14011301 AAATCTCGAACCGTAGAAAGTTTCAAAAATCCTGAAAAATAGAAAAAGGGTCGCCTTGCCATGAA
323 AAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
14011366 ACTTCACGTGAAGGCTTAAGAGACTATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
14011431 CAGAAATATGAAGATGTGACTAAACCCACCTACCAACTTATCGATTCACAGCTTGCGCATCCCGT
453 CAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* **
14011496 CTCTTTGGCC-GACGTA--G--CG-CCT---GCTCGCCCGCTCGTTTAATCGGTTGGCTTAGGCA
517 CTCTCTGGCCGGA-GTAGTGCCCGCCCTCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
14011552 TACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACTGCA
580 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCA
** ** * * *
14011617 CGTAGAGGGGGAGTCAATCGATCCCAGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCG
645 CGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCG
* * * *
14011682 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACCGAGTTG
710 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
14011747 ATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGAATGTGT
775 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
*
14011812 TGGTGCCGCATTTTTCTTC
840 TGGTGCCACATTTTTCTTC
14011831 ACCGGCAGCA
Statistics
Matches: 5491, Mismatches: 537, Indels: 307
0.87 0.08 0.05
Matches are distributed among these distances:
840 29 0.01
841 31 0.01
842 69 0.01
843 7 0.00
844 168 0.03
845 23 0.00
846 1 0.00
847 3 0.00
849 2 0.00
850 1 0.00
851 9 0.00
854 7 0.00
856 1 0.00
858 1 0.00
860 2 0.00
861 4 0.00
862 1 0.00
865 6 0.00
867 291 0.05
868 145 0.03
869 49 0.01
870 3 0.00
871 2 0.00
873 4 0.00
874 5 0.00
875 49 0.01
877 186 0.03
878 41 0.01
879 11 0.00
881 2 0.00
882 1 0.00
884 2 0.00
885 26 0.00
886 17 0.00
887 496 0.09
888 3 0.00
889 3 0.00
890 2 0.00
891 6 0.00
892 617 0.11
893 293 0.05
894 98 0.02
895 215 0.04
896 391 0.07
897 38 0.01
898 125 0.02
899 99 0.02
900 357 0.07
901 85 0.02
902 562 0.10
903 744 0.14
904 148 0.03
905 1 0.00
906 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
TCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGAGTAGTGCCCGCCCTCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCAGGATCGACAGCACGTAGA
GGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCACCCGCACACT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CACATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACCGAC
Found at i:14009044 original size:26 final size:26
Alignment explanation
Indices: 14009008--14009060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14008998 GTTGACTTAG
14009008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14009034 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14009060 G
1 G
14009061 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14009941 original size:26 final size:26
Alignment explanation
Indices: 14009911--14009963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14009901 GTTGACTTAG
*
14009911 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
14009937 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14009963 G
1 G
14009964 ATCGGATGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14010841 original size:26 final size:26
Alignment explanation
Indices: 14010812--14010864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14010802 GTTGACTTAG
*
14010812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14010838 GCATACGGAGTTCATTGCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14010864 G
1 G
14010865 ATCGGAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14011737 original size:26 final size:26
Alignment explanation
Indices: 14011708--14011760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14011698 GTTGACTTAG
*
14011708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
14011734 GCATACCGAGTTGATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
14011760 G
1 G
14011761 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:14012563 original size:26 final size:26
Alignment explanation
Indices: 14012527--14012579 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14012517 GTTGACTTAG
14012527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14012553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14012579 G
1 G
14012580 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14013437 original size:26 final size:26
Alignment explanation
Indices: 14013401--14013453 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14013391 GTTGACTTAG
* *
14013401 GCATACGGAGTTCGCTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
* *
14013427 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
14013453 G
1 G
14013454 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:14014341 original size:26 final size:26
Alignment explanation
Indices: 14014304--14014356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14014294 GTTGACTTAG
14014304 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14014330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14014356 G
1 G
14014357 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14016047 original size:26 final size:26
Alignment explanation
Indices: 14016017--14016069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14016007 GTTGACTTGG
*
14016017 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
14016043 GCATACAGAGTTCCTTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14016069 G
1 G
14016070 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14016965 original size:26 final size:25
Alignment explanation
Indices: 14016924--14016975 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14016914 GTTGACTTAG
14016924 GCATACGACTTCATTCCCAGTCTAA
1 GCATACGACTTCATTCCCAGTCTAA
*
14016949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GACTTCATTCCCAGTCTAA
14016975 G
1 G
14016976 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGACTTCATTCCCAGTCTAA
Found at i:14019638 original size:26 final size:26
Alignment explanation
Indices: 14019602--14019651 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14019592 GACTTAGGCA
14019602 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
14019628 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
14019652 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:14021582 original size:26 final size:26
Alignment explanation
Indices: 14021553--14021602 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14021543 GACTTAGGCA
14021553 TACGAAATTCATTCCCAGTCTAAGCG
1 TACGAAATTCATTCCCAGTCTAAGCG
* *
14021579 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAATTCATTCCCAGTCTAAG
14021603 AACAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAATTCATTCCCAGTCTAAGCG
Found at i:14022476 original size:26 final size:26
Alignment explanation
Indices: 14022446--14022498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14022436 GTTGACTTAG
*
14022446 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14022472 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14022498 G
1 G
14022499 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14023386 original size:26 final size:26
Alignment explanation
Indices: 14023350--14023402 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14023340 GTTGACTTAG
14023350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14023376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14023402 G
1 G
14023403 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14023396 original size:904 final size:900
Alignment explanation
Indices: 14021381--14026226 Score: 6648
Period size: 904 Copynumber: 5.4 Consensus size: 900
14021371 CGCTCATTTC
* * *
14021381 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGGCAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * *
14021446 AGGATCAATAGCATGCAGAGGTGGACCCGACCGATCCCCGGCTTAC-ACATCCCGCCCCTCTGGC
66 AGGATCGACAGCACGCAGAGG-GGACCCGGCCGATCCCCGGCTTACGA-ATCCCGCCCCTCTGGC
* * * *
14021510 CGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTA
129 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
14021575 AGCGTACGGAGTTCATTCCCAGTCTAAGAACAGATCGGACCGAGGGTTGCGGCAGCACATGGTGG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TGTGACAGCACATGCTGG
* * * * * *
14021640 CCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCGCCGAGGCACCATCGCCGGTGCAT-GCCTGGA
258 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-C-GGA
* * * * * *
14021704 GAACCTGACCGACGGCATTAGGGTTTC-AGCGATC-GAGGGGCCGAGGGGGTGTGCGCTCATGAT
321 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* ** *
14021767 GTACGATCTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACT
385 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
14021832 CACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
450 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* **
14021897 AATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTATACACTTTAAGTTTTTAGCTGTAATTTT
515 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG-AA-TTT
*
14021961 TTTGTGCATGCCAACAAAAATACAAGGGATCACATCTACCAAGTTT-GGGCCAAAA-TCCTTTCC
578 TTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCC
*
14022024 -AAAAAATTTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
641 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
14022088 CGTCTTGCCATGAAACTTCACGTTGAAGGC-TCAGGGACCATTGTATGAATTTACAAGCCATAAA
706 CGTCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
14022152 AATGGCATT-GCATGCATAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-G
770 AATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* **
14022215 GCTTGCG-TTCCCGTCTCTCTC-CCTGTATAGTGCCCG--CGCCTGCCCTACCCG-TCGTTTCAT
835 GCTTGCGCATCCCGTCTCTCTCGCC-GCGTAGTGCCCGCCCGCCTGCCCTACCCGCTCGTTTCAT
*
14022275 CT
899 CG
* *
14022277 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * *
14022342 AGGATCGACAGCACGCAGAGGGGAACCCGGTCGAACCCCGGCTTGCGAATCCCGCCCCTCTAGCT
66 AGGATCGACAGCACGCAGAGGGG-ACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGCC
* * *
14022407 GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
14022472 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTAACAGCACATGCTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT-GTGACAGCACATGCTGGG
* * *
14022537 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CGGAGA
* *
14022602 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
323 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
14022667 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
14022732 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14022797 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTAAAATTTTTTG
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCT-GAATTTTTTG
* *
14022862 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
14022927 ATTTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
647 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
14022992 GCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14023057 TTGGCATGCAGAAACATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
777 TTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
14023122 TGTCCCGTCTCTCTCGCCTGCATAGTGCCCGCCCGCCTG-CCTACCCGTTCGTTTCATCT
842 CATCCCGTCTCTCTCGCC-GCGTAGTGCCCGCCCGCCTGCCCTACCCGCTCGTTTCATCG
* * *
14023181 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * *
14023246 AGGATCGACAGCACGCAGAGGGGAACCCGGCCAAACCCCGGCTTACGAATCCCGCCCCTCTAGCT
66 AGGATCGACAGCACGCAGAGGGG-ACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGCC
14023311 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
14023376 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TGTGACAGCACATGCTGGG
* * *
14023441 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCTGGGGCACCAT---C---G--TCG-GG-GAA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCGGAGAA
* * * *
14023496 CCTGACTGGCGGCATTAGGGTTCCGACAATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTTC
324 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
14023560 GATGGGTGCTGGTACTTGACCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
389 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
14023625 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
454 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
14023690 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTGGT
519 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT-GT
* * * ***
14023755 GCATGCCAACAAAAATGCAAGGATCATGTCTACCAAAGTTAGGGGCCAAAACTCCTTTTGAAAAA
583 GCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
14023820 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGTCGTCTT
647 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
14023885 GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14023950 TTGGCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGC
777 TTGGCACGCAG-AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
14024015 GCATCCCGTCTCTCT-GACCGACGTAGTGCCCGCCCGCCTGCCCT-CCCGCTCGTTACGTCG
841 GCATCCCGTCTCTCTCG-CCG-CGTAGTGCCCGCCCGCCTGCCCTACCCGCTCGTTTCATCG
* * * * ** *
14024075 GTTGGCTTAGGCATACGGAGTTCATTCCTAATCTATGATCAGACCGGACCAAGGGTTACGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * * * *
14024140 AGGATCGGCAGCACGCAGAGGGGGACCCGTCTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
66 AGGATCGACAGCACGCAGA-GGGGACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGCC
* *
14024205 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14024270 GCATACGGAGTTGATTCCAAGTCTAAGATCGGACCGGACCGAGGGT-T-ACGGTAGCACATGCTA
195 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGTGAC---AGCACATGCTG
* * * * * *
14024333 GGCTCGGGCTTGGGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCAGA
257 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CGGA
* * * * * * *
14024398 GAACCTAACCGGCGGCATTTGTGTTCCAACAATC-GGGGGGCCAGGGGGGTCTGCGCACATGATG
321 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
14024462 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
386 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
14024527 ACACCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
451 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
14024592 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTT
516 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATT-TTT
*
14024657 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAA
580 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
14024722 AAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
645 AAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
14024786 CTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
709 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
14024851 GCATTGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
774 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
14024916 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCC-GCCTGCTCATTTCGTCG
839 GCGCATCCCGTCTCTCTCGCCG-CGTAGTGCCCGCCCGCCTGCCCTACCCGCTCGTTTCATCG
* * * * *
14024978 GTTGGCTTAGGCATAGGGAGTCCATTCCCAGTCTAAGAT-TGAACCAGACTGAGGGTTGTGGTAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAG
* * ** * * * *
14025042 CAGGATCGACAACACGTAGAGGGGGACCCGGTTGATCCTCGGCTTACGCATCCTGCCCCTCTGGT
65 CAGGATCGACAGCACGCAGA-GGGGACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGC
* * *
14025107 CGACTGAGCGCCTGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
129 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
14025172 AGCATACGGAGTTCATTCCCAGTCTAATATCTGACCGGACCGAGGGATGCGACAGCATAT-CGTA
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TGTGACAGCACATGC-TG
* *
14025236 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCACCGGGGCACCATCACCGGAGCATCGCCGGA
257 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CGGA
** * * *
14025301 GAACCTGACCGATGGTATTGGGGTTCCGACGAGCGGGGGGGCCGAGGGGGTTGTGCGCACATGAT
321 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGAT
14025366 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
385 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
14025431 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGA
450 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
14025496 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
515 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
* * *
14025561 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCGAAACTCCTTTCAAAA
580 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
14025626 AAAGTTTAGAAAATCTCAAACTGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
645 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
14025691 TCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
710 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** *
14025756 CATTGGCACCCAAAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTG
775 CATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** **
14025821 CGCATCCTGTCTCTCTGGCCGGCGTAGTGCGTGCCCGCCCT-CCC-ACTTGCTCGTTTCATCG
840 CGCATCCCGTCTCTCTCGCC-GCGTAGTGCCCGCCCG-CCTGCCCTACCCGCTCGTTTCATCG
* * *
14025882 GTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATC-GAATC-GAACTGCGGGTTGC-G--
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACTGAGGGTTGCGGCA
** * *
14025942 GCA-G-T--AC-GCA-G-AG-GGGGACCCTACCGATCCCCGGTTTACAAATCCCGCCCCTCTGGC
64 GCAGGATCGACAGCACGCAGAGGGGACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGC
* * * * *
14025999 CGGCTGAGCGCCCACAGGCTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAATCTA
129 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
14026064 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT-TACAGCAGCACATGCTG
194 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGT-GA-CAGCACATGCTG
* * ** ** * *
14026128 GGCTTGGGCATGTGTTGGTGCCATATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCGCTGGA
257 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGC-GGA
*
14026193 GAACCTGACCGGCGGCATTGGGGTTCTGACGATC
321 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC
14026227 AGACCAGACC
Statistics
Matches: 3547, Mismatches: 341, Indels: 128
0.88 0.08 0.03
Matches are distributed among these distances:
891 11 0.00
892 453 0.13
893 200 0.06
894 359 0.10
895 11 0.00
896 331 0.09
897 227 0.06
898 157 0.04
899 52 0.01
900 10 0.00
901 17 0.00
902 19 0.01
903 411 0.12
904 807 0.23
905 476 0.13
906 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
AGGATCGACAGCACGCAGAGGGGACCCGGCCGATCCCCGGCTTACGAATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGTGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTCGCCGCGTAGTGCCCGCCCGCCTGCCCTACCCGCTCGTTTCATCG
Found at i:14024274 original size:26 final size:26
Alignment explanation
Indices: 14024244--14024296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14024234 GTTGACTTAG
*
14024244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
14024270 GCATACGGAGTTGATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14024296 G
1 G
14024297 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:14025183 original size:26 final size:26
Alignment explanation
Indices: 14025147--14025198 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14025137 GTTGACTTAG
14025147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14025173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14025199 TATCTGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14025263 original size:903 final size:904
Alignment explanation
Indices: 14015144--14034889 Score: 10190
Period size: 903 Copynumber: 21.4 Consensus size: 904
14015134 GTTGACTTAG
* * *
14015144 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
14015209 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGGT-GAGGGCACCATCGTCGGAGCATCGCGCGG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ATCG-GGGCACCATCGTCGGAGCATCG-TCGG
* * * ** *
14015273 AGAACCTGACCAGCAGCATTAGGGTTCTAACGATCGGGGGGGCTA-GGGGGTGTGCGCACATGAT
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGAT
* * * *
14015337 GTGTGATGCGTGCTGGTACTAGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
14015402 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
14015467 AATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
14015532 TTATGCATGCGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCAAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
14015597 AAAATTTTAAAACATCCCGAACC-CAAAAAGTTTC-GAAATCGTGAAAAAGAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
14015660 CTTGCCATAAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
14015725 GCATTGGGACACAGAAATATGAAGATGTGCCTGAACCCACTTACCACCCTA-CGGATCCACGGCT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGGCT
** *
14015789 TATGCATCCCGTCTCTCTGGCCGACGTAGTG-T---CCGCCCG-CCTGCCCGCTCGTTTCGTCAG
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCC-GCCCGCTCGTTTCGTCGG
* * * **
14015849 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGA-ACCGGACCAAGGGTTGTGGCAGC
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGC
* * * *
14015913 AAGATTGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
775 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * * * *
14015978 GGCTGAGCATCCGTACGCTCGTTTCATGGGTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAA
840 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
14016043 GCATACAGAGTTCCTTCCAAGTCTAAGATCGGACCGGATCGAGGGTTACAACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * ** ** *
14016108 CTCGGGCATGTGCTGGAGCTACCTATTTCTTCATCAGGGCACCATCACCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
14016173 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGCGAGGTCGGGGGGGATGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-G-GGCCAGGGGGG-TGTGCGCACATGATG
14016238 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
14016303 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
14016368 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
14016433 TGTGCATACCAAAAAAAATACAAGAATAATGTCTACCAAGTTTAGGGCCAAAATTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
14016498 AAATTTTAAAAAAT-CTCGAACTGTAAAAAGTTTGAAAAATCGTAAAAAATAGAAAACGATTCGT
453 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
14016562 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**** * *
14016627 GCATTGGCATATTGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * ** * * *
14016692 GTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCACACACCCGTCCGTTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
** * *
14016757 GGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGA-ACCAGATTGAGGGTTGTGGCAGCAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAG
* * * **
14016821 GATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTTTGCATCCCGCCCCTCTGGCCGG
777 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
14016886 CTGAGCAGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GACTTCATTCCCAGTCTAA
842 CTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14016949 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGTGGTTACGACAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GGTTGCGACAGCACATGCTGG
* * *
14017014 GCTCGGGGCATGTGCTGGGTGCCAC-TTTTTCTTCGTCGAGGCACCATCGT-GAGAGCATCGCGC
65 GCTC-GGGCATGTGCT-GGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG-GAGCATCG-TC
* * **
14017077 GGAGAACCTGACCAGCGGCATTAGGGTTCTAACGATCGGGGGGGCCA-GGGGGTGTGCGCACATG
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATG
*
14017141 ATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
14017205 CTCACA-CCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTACCCAGTAGCCATTAAAGTGTC
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTC
*
14017269 TTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
14017334 TTTTTGTGCATGCCAACAAAAATACAAGGATCATC-TCTACCAAGTTTGGGGCCAAAACTCCTTC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTC
** * ** * *
14017398 CAAAAAAATTCAAAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAATTAGAAAACA
448 CAAAAAAATT--TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
14017463 AGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTGCAAGCCATA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
14017528 AAAATGGCATTGGCATGCAGAAATATGAAGATGTTG-CTAAACCCACCTACCACTCTATCGATCC
576 AAAATGGCATTGGCACGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
14017592 ACGGCTTGTGCATCCCGCCTCTCTGGTCGGCGTAGTGCTCGCCCG-CC-T--GCCCGCTCGTTTT
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTC
* * * * *
14017653 GTCGGCTT-GCCTAGGTATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTTT
705 GTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGT
** * **
14017716 GGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCT
769 GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
14017781 CTGGCCGACTGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTT-----T----A-TT-A---CCA
834 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
14017832 GTCTAA
899 GTCTAA
* * * * *
14017838 GCATACGGAGTTTCATTACCAATCTAAGATTTGGATCGGGATCCGAGGGTTGCGGCAGCACATGC
1 GCATACGGAG-TTCATTCCCAGTCTAAGA-TCGGA-CCGGA-CCGAGGGTTGCGACAGCACATGC
** * * * ** *
14017903 TGGGCCTCGAACATGTGTTGGTGCCACATTTTTCTTC-GCGGGGCACAATTTTCGAAGCATCGTC
62 TGGG-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC
** *
14017967 GGAGAACCTGACCTGATGGCATTGGGGTTCCGACGATC-GGGGGCCGGGTGGGGCT-TGGCTGCA
126 GGAGAACCTGACC-GGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGG-GGGG-TGT-GC-GC-
*
14018030 ACATGATGTG-GAATGGGTGCTCGGTACTTAGCCCCTTTATATTGGCCCCCTATCCCTCATCAAA
185 ACATGATGTGCG-ATGGGTGCT-GGTACTT-GGCCC-TTATATTGGCCCCCTATCCCTCATCAAA
14018094 CCTCAGAGAACTTCACACCTCCCTTAAAGAGCATTTGAGATTTTTACAAGGTTTGCTGCCCCAGT
246 CCTC-GAGAAC-TCACACC-CCCTTAAAGAGCATTTGAGA-TTTTAC-AGGTTTGCTG--CCAGT
* * *
14018159 AGCCATTAAAGTGTCATAAAATGTTGGACACTTTTTGTCAAATGGCCACAAAATCTTGTACACTT
304 AGCCATTAAAGTGTC-TGAAATG-GGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTT
*
14018224 CGAGTTTTTAGCTGAATTTTTTTGTTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
366 CGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *** *
14018289 TGGGGGCC-AAACTCGTT-CTGTAAAATTTTAAAAAAATCAC-GAACCGGCAAAAAGTTTTAAAA
430 T-GGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATC-CTGAACC-GCAAAAAG-TTT-CAA
* * *
14018351 AAATCATGCAAATATAG-AAACGA-TCGT-TCTGCACATTGAAAATTCACGTGAAGGCTTAAGGG
489 AAATCGTG-AAAAATAGAAAACGAGTCGTCT-TGC-CA-TGAAACTTCACGTGAAGGCTTAAGGG
* *
14018413 ACCATTGTATGAATTTACAAGTCATAAAAATGGGCATTGGCATGCCAG-AATATGAAGATGTGCC
550 ACCATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCACG-CAGAAATATGAAGATGTGCC
* * *
14018477 TAAATCCCACCTACCACCGTATCGATCCATGGTTTGCGCATCCCGTCTCTCTGGCCGACGTA--G
613 TAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
14018540 -T-GCCCG--C--CCGCCCGCTCG-TTC-TCGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTC
677 CTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
14018596 TAAGA-TCAGACCGGACTGAGGGTTG-GGTAGCAGGATCGACAGCACGCAAAAGGGGA-CCGGTC
742 TAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCC
* * * *
14018658 GATCCCCAGC-TGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGC-CGC-C---TC----ATT
807 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
14018713 ---TT-----TACGG-G-T-ATT--GACT-TAC
872 GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14018732 GCATACGGAGTTCATT-CCAGTCTAAGATCAGTCCAGA-CAAGGGTTGCGGCAGCAC-TGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
14018794 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
14018859 ACCTGACCGACGGCATTGGGCTTCCGGCGATCGAGGGG--TGGGGGGTGTGCGCGCATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
* * *
14018922 GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCATA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
14018987 CCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14019051 GGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
14019116 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** * * * ** *
14019181 TTCAAAAAAAATCCAGAACAGTAAAAAGTTTTGAAAATCGTGAAAATTAGAAAACGAGTCGTCTT
456 TT-TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
14019246 GCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14019311 TTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
14019376 CATCCCGCCTCTCTGGCCGGTGTAGTGCTCGCCC-ACC-T--GCCCGCTCGTTTTGTCGGTTTGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
14019437 TTAGGCATACGGAGTTCATTCGTAGTCTAAGA-TCAGATCAGACTGAGGGTTGTGGTAGCAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGAT
* * * * *
14019501 CGATAGCATGCAGA-GGGGACCTGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
780 CGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
14019565 AGCGCCCCCACGCTTGTTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
14019625 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTG-CAGCACACACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
* * ** * * *
14019689 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCACCAGAGCATCATCGCAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * ** * *
14019754 AACCTGACCAGCGACATTGAGGTTTCGGTGATTGGGGGGCC-GGGGGGTGTGCGCGCATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
** * * *
14019818 CGACAGGTGCCGATACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14019883 ACCCCCTTAAAGAGCATTAGAGATTTTACAGATTTGCTGCCATTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14019948 GGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTGAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
14020013 TGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTACTTCCAAAAAT
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * * * * * *
14020078 ATTTTAAAAAATCCAAAACCGTAAAAACTTTCGAAAATCGTGTAAAATAGAAAATGAGTCATCTT
455 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
14020143 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14020208 TTGGCCTAGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTG
585 TTGG-C-ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
14020273 TGCATCCCGTCTCTCTGGCCGACGTAGTGCT--------CGTCCGCCTGCTCGTTTCATCGATTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
14020330 GCTTAGGCTTACGTAGTTCATTCGCAGTCTAAGA-TCAGGCCAAACTGAGGGTTGCGGCAGCAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGG
* * *** * * * * * * *
14020394 ATCGACAGCACGCAAAAGGGGACCTTACTGATCCCCTGCTTACACATCCTGCCCCTCTAGCCAGC
778 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
14020459 TGAGCGCCCGCACGCTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
14020521 G-AT-C-G-G---A----C---C----A---GACC--A---AGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * *
14020559 GCTTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
65 GC-TCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * ** *
14020623 GAACCTAACCGGTGGCATTGGGCTTCCGACGATCGGGGGG-GTGGGGGGTGTGTGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * *
14020687 GCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
14020752 TACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTACTGCCACTAGCCACTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
14020817 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
14020882 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCTCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* ** * * * * *
14020946 GAATTCAAAAAAAATCTTGAACCGTAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCAT
453 AAATT-TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
14021011 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * * *
14021076 GCATTGGCATGAAGAAATATGAAGATGTGCCTAAAATCACCTATCGCCCTACCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
14021141 GCGCATCCCGTCTCTCTGGCCGATGTAGTGC-CTACCCGCCTG-CCTGTCTGCTCATTCCGTCGG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTC-GCCCGCCCGTCC-GCCCGCTCGTTTCGTCGG
* ** * *
14021204 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACC-GAACCAAGGGTTGCGGTAG
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAG-ACTGAGGGTTGTGGCAG
* * * * *** * *
14021267 CAGGATCGAGAGTACGCATAGGGGAACCTAACCGATCCCCGGCTTGCACATCCTG-CCCTCTGGC
774 CAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * ** * *** * *** * * **
14021331 CGGC-GTAGTGCCCGCCCGCTCG-CCCGTCCGCCCGCCTGCCCGC-T-C--ATTTCGTTGGC--T
839 CGGCTG-AGCGCCCGCACGCTCGTTTCGT-GGGTTGACT-TAGGCATACGGAGTTCATTCCCAGT
*
14021388 -TAG
901 CTAA
* * * * *
14021391 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGGCAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-G-A-CAGCA-C-AT-
* * * * * ** **** *
14021456 GCATGCAGAGGT-GGACCCGACCGATCCCCGGCTTACACATCCCGCCCCTC-TGGCCGGTTGAGC
60 GC-TG--G-GCTCGG--GC-A-TG-T-GCTGG-TGCCACAT--TTTTCTTCAT---CGG--G-GC
* ** * * * ** * * * *
14021519 GCCCGTACGCTCGTTTCGTG-GGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCGTACG
106 -ACC--A---TCG--TCG-GAGCAT--CGTCGG---A-G-AA--CCTGACC-GGC--GGCAT-TG
* * * ** * * * * * *
14021583 GAGTTCATTCCCAGTCTAAGAACAGATCGGACC-GAGGGTTGCGGCAGCACATGGTG-GC-CTCG
149 G-G---GTT-CC-G---ACGATC-G-GGGGGCCAGGGGGGTG-TGC-GCACATGATGTGCGAT-G
* * ** * * * ** ** *
14021645 GGCATG-TGCTA-GTGCTGCATTTTTCTTCGCCGAGGCACC-ATCGCC-GGTGCATGCCTGGAGA
200 GG--TGCTGGTACTTG--GCCCTTATATTGGCC----C-CCTATC-CCTCAT-CAAACCTCGAGA
* ** * ** * ***** ** *
14021706 ACCTGACCGACGGCATTAGGGTTTCAGCGA-TCGAGGGGCCGAGGGGGTGTGC-GCTCA-T-G--
254 A-CTCA-C-ACCCCCTTAAAG----AGC-ATTTGA-GATTTTA-CAGGTTTGCTGC-CAGTAGCC
** * * * * * ** ** * *
14021765 ATGTACGATCTGTGCTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAG
308 AT-TA--AAGTGT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG
* ** ** *** *
14021828 AACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTT-TGC-TGCCAGTAGCAATTAAAGT
359 TA--CACTTCGAGTT-TTTAGC---TGA-ATTTT----TTTGTGCATGCCA--A-CAA--AAA-T
* * * ** * * * ** * *** **
14021891 GTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAATCTTATACACTTTAAGTTTTTAGC
407 -AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTC-CAAAAAAATTTTA--
*** ** ***** ** * * * ** * *
14021952 TGTAATTTTTTTGTGCATGCCAA----CAAAAATACAAGGGATCACAT--CTACCAAGT--T-TG
461 AAAAATCCTGAACCGCA--AAAAGTTTCAAAAAT-C--GTGA-AAAATAGAAAACGAGTCGTCT-
* *** *** *** ** * ** * **
14022008 GGCCA--AAATCCTTTC-CAAAAAATTTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCAT
519 TGCCATGAAA--C-TTCACGTGAAGGCTTAAGGGA-C-C--ATTGTATGAA-TTT-ACAAGCCAT
* * * ** * * ** **
14022070 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTTGAAGGCTCAGGGACCATTGTATG
575 -AAAAAT-G---GC-A-TTGGCACG-CA-GAAA--T-A---TGAA-GAT--GTG-CC--TAAACC
* ** * * *** * ** * ** *** * ** * *
14022135 AATTTACAAGCCATAAAAATGGCATTGCATGCATAAATATAAAGATGTGC-CTAAACCCACCTAC
619 CACCTACCA-CCCTATCGAT-CCACGGCTTGC----GCATCCCG-TCT-CTCT-GGCCGACGTA-
*** * * * * * * *** * * *
14022199 CACCCTATCGATCCAGGCTTGCGTTCCCGTCTCTCTCCCTGTATAGT-GCCCGCGCCT-GCCCTA
674 -GTGC--TCG--CC-CGC--CCG-T-CCG-C-C-CGCTC-GTTTCGTCGGTTG-GCTTAGGCATA
** ** * * * ** * * * * **
14022262 CCCGTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAG-ACCAGA
724 --CGGAG-TTCA----TT--CCCAGTC-TA-AGA-TTGA-GACCAGACTGAGGGT-TGTGGCAG-
* * * ** ** *
14022325 CTGAGGGTTACGGTAGCAGGATCGACAGCACGCAGA-GGGGAACCCGGTCGAACCCCGGCTTGCG
774 C--A-GGAT-C-G-A-CAGCA-CG-CAG-AGGGGGACCCGG---CC----GATCCCCGGCTTGCG
* * * * *
14022389 AATCCCGCCCCTCTAGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGG
822 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
14022454 AGTTCATTCCTAGTCTAA
887 AGTTCATTCCCAGTCTAA
* **
14022472 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
14022537 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
14022602 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
14022667 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
14022732 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14022797 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTAAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
14022862 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
14022927 ATTTTAAAAAAT-CTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
14022991 TGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
14023056 ATTGGCATGCAGAAACATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * * * *
14023121 GTGTCCCGTCTCTCTCGCCTG-CATAGTGCCCGCCCGCCTG-CCTACCCGTTCGTTTCATCTGTT
649 GCATCCCGTCTCTCTGGCC-GACGTAGTGCTCGCCCGCCCGTCC-GCCCGCTCGTTTCGTCGGTT
* * *
14023184 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATT-AGACCAGACTAAGGGTTGCGGCAGCAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * * * *
14023248 GATCGACAGCACGCAGAGGGGAACCCGGCCAAACCCCGGCTTACGAATCCCGCCCCTCTAGCTGG
777 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
14023313 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
14023376 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** *
14023441 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-GCTGGGGCACCA---TC---G--TCG--GG-G
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
14023494 AACCTGACTGGCGGCATTAGGGTTCCGACAATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * * *
14023558 TCGATGGGTGCTGGTACTTGACCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
14023623 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
14023688 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTG
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ***
14023753 GTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAAGTTAGGGGCCAAAACTCCTTTTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
14023818 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGTCGTC
453 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
14023883 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
14023948 CATTGGCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTT
583 CATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
14024013 GCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCTGCCCTCCCGCTCGTTACGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
* * * * * ** **
14024078 GGCTTAGGCATACGGAGTTCATTCCTAATCTATGA-TCAGACCGGACCAAGGGTTACGGCAGCAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * * *
14024142 GATCGGCAGCACGCAGAGGGGGACCCGTCTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCAG
777 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
14024207 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
14024270 GCATACGGAGTTGATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
14024335 CTCGGGCTTGGGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
14024400 ACCTAACCGGCGGCATTTGTGTTCCAACAATCGGGGGGCCAGGGGGGTCTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
14024465 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
14024530 CCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
14024595 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
14024660 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
14024725 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
456 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
14024790 CCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
14024855 TGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14024920 ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCTGCTCATTTCGTCGGTTGGCT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
14024985 TAGGCATAGGGAGTCCATTCCCAGTCTAAGATTGA-ACCAGACTGAGGGTTGTGGTAGCAGGATC
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGATC
* * ** * * * * *
14025049 GACAACACGTAGAGGGGGACCCGGTTGATCCTCGGCTTACGCATCCTGCCCCTCTGGTCGACTGA
781 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
14025114 GCGCCTGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14025173 GCATACGGAGTTCATTCCCAGTCTAATATCTGACCGGACCGAGGGATGCGACAGCATAT-CGTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC-TGG
* * * ** *
14025237 GCTCGGGCATGTGCTGGTGCCGCATTTTTCATCACCGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
** * * *
14025302 AACCTGACCGATGGTATTGGGGTTCCGACGAGCGGGGGGGCCGAGGGGGTTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGGTGTGCGCACATGATG
14025367 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
14025432 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
14025497 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
14025561 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCGAAACTCCTTTCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * **
14025626 AAAGTTTAGAAAAT-CTCAAACTGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
14025690 CTCGCCATGAAACTTCACGAGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
14025755 GCATTGGCACCCAAAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
14025820 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCGT-GCCCGCCC-TCC-CACTTGCTCGTTTCATCG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGC-TCGCCCGCCCGTCCGC-C-CGCTCGTTTCGTCG
* * * *
14025882 GTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGA-ATC-GAACTGCGGG-T-T----
709 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAG-ACTGAGGGTTGTGGCA
* ** * * **
14025939 GC--G---G-CAGTACGCAGAGGGGGACCCTACCGATCCCCGGTTTACAAATCCCGCCCCTCTGG
773 GCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
14025998 CCGGCTGAGCGCCCACAGGCTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAATCT
838 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
14026063 AA
903 AA
* * *
14026065 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * *** ** *
14026129 GCTTGGGCATGTGTTGGTGCCATATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGA
* *** * ** * *
14026193 GAACCTGACCGGCGGCATTGGGGTTCTGACGATCAGACCAGACC-GAAGGTTGTGACAGCAAGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G-GGGGGCCAGGGGGGTGTG-C-GC-ACAT
* * * * ** * ** *
14026257 CGACAGCATGCAGA-GGGGGACCTGG-CCGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGC
189 -GA-TG--TGC-GATGGGTG--CTGGTAC-TTGGCC--CTTA--TAT-TGGCCCC-CTATCC--C
* * * ** **** * ** *
14026320 TGAGTGC---CCGCGCGCTCGTTTCATGGGTTCACTT--AG-GCATACG-GAGTTCATTCCCA-G
238 TCA-T-CAAACCTCGAGAAC---TCA--CACCCCCTTAAAGAGCATTTGAGA-TT--TT-ACAGG
* * * * ** ** * *** * *
14026377 TCTAAGCAT-ACGGAATTCATTCCCA--GTCT-AAGAT-CGGAC-C--GGATC-GAGGGTTC-CG
292 T-T-TGC-TGCCAGTAGCCATT-AAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGG-TCAC-
** * ** * ** *
14026432 ATAGCAGATGC-TGGGCTCGGGCAAGTGCTGGT-GC-CAGATTTTTCTTCGTCGGGGCACCATCG
350 A-A--A-AT-CTTGTACAC-TTCGAGT--TTTTAGCTGA-ATTTTT-TT-GT----G---CAT-G
* ** ** * ** * * * ** **********
14026494 CCGGAGC-ATCAT-C--GGAGAACCTAACTGGC-GGCATTGGGTTCCGACGA-TCGGGGGGCTGG
396 CC--AACAAAAATACAAGGATCACGT--CTACCAAG-TTTGGG-GCC-AAAACTCCTTCCAAAAA
** * *** * *** * *** *** ** * ** * * * **** *
14026553 GGTTGT-GCGAA-CATGATGGGCGATGGGTTCTGGTACTTGGCCTTTATATTGGCCCCCTA-TCC
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTT-TCAAAAAT--CGTGAAAAATAGAAAACGAGT-C
* * * * * * ** * **
14026615 CTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAA--GA-TTTTGCA-GGTTTGC
515 GTCTTGC---CAT-GA-AACT-TCA----CGTGAAG-GC--TTAAGGGACCATTGTATGAATT--
* * * * * * **** * * *
14026675 TGCCAGTAGCCATTAAAGTGTCTGAAATGG--GGACACTTTTTTCAA-ATG-GTCACAAAATCTT
565 T-ACA--AGCCATAAAAATG---GCATTGGCACG-CAGAAATATGAAGATGTG-C-CTAAA-C--
** * * *** * * ** **** * ******* *
14026736 GTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATTCCAAAAAAAAAAAACAAGGATCACAGC
618 CCAC-CTACCACCCTATCGATCCA-CGGCTTGCGCA-TCC-----CGTCTCTC-TGG--C-C-G-
** * ** * * ***** * ** * **
14026801 TACCAAGT-TTCAGGCCAAAACTCCTTCTGAAAAAAAT-TTTAAAAAATC-TCGAATCGCAAAAA
669 -ACGTAGTGCTC--GCC--CGC-CCGTCCG--CCCGCTCGTT------TCGTCGGTTGGC--TTA
* * * * *** * ** * * * *
14026863 GTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCTTGAAACTTCA-CCTGAAGGCTTA
718 G--GC--ATA-CG-G---AGTTCATTCCCAGTC-T-AAG-ATTGAGAC--CAGACTG-AGGGTT-
* * ** ** * ** * ** * ***** *
14026927 AG-GGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTCGCATGCAGAAATATGAAGATG
767 -GTGG--CA--GCA-GGATCGAC-AGCAC-GCAGAGGGGGA--C-CCGGCCG--ATCCCCGGCT-
* * *** * * * * ** ** *
14026990 TGC-CAAAACCCACCTACCACCCTATCAACCAACGGCTTGTGCATCCCG-TCTCTC-TAGCCAGC
818 TGCGC---A-TC-CC--GC-CCC--TCTGGC--CGGC-TGAGC-GCCCGCACGCTCGTTTCGTGG
* ** * *** ** * * * * *
14027052 GTTGTGC-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
869 GTTG-ACTTAG-GCATACG-GAGTTC-ATTC-CCAG-T--C-TAA
* * **
14027096 GCATACGGAGTTCATTCCCAGTCTGAGATCAGACCATACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-G-A-C---A--G-C-
* * * * * * * **** *** *
14027161 ACACGCAAAGGGGGACTCGGTCGATCCCTGATTTGTG-CATCCTGCCCCTCTGGCCGGCTGAGCG
56 ACATGC----TGGG-CTCGGGC-AT--GTG-CTGGTGCCA-CATTTTTCT-TCATCGG--G-GCA
* ** ** * * * * * * *** * *
14027225 CC--CGCACGCTCGTTTCGTTGGTTG-ACTTAGGCATACGGAGTTCATTCCCAG-T-CTAAGATC
107 CCATCG-TCG-GAGCATCGTCGG-AGAACCT--G-A-CCGGCG-GCATT-GGGGTTCCGACGATC
** * * * * * * * * * *
14027285 GGATCGGACTGAGGGTTGTGGCAGCCCATG-T-TGGGCTCGG-GCAT-GTGCTGGTGCCGCATT-
163 GG-GGGGCCAGGGGGGTGT-GC-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C-TTA
* * * * * * * ** *
14027345 T-TT--CTTCGCTAGGGT-GC-CATC--ACC-GGAGAACCTGAC-CGGCGGCATTAGGGTTCCTG
221 TATTGGC-CCCCTA---TCCCTCATCAAACCTCGAGAA-CTCACAC--C-CCCTTAAAG----AG
* * ****** * * ** ****
14027401 CAATCG-GGGGGGCCGGAGGGGTGTGC-GCACATGATGTGAGATGGGTGCTGGTACTTGCCCCTT
274 CATTTGAGATTTTAC--A--GGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-TG------
* * ** * ** **** ** * * *
14027464 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
321 AAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAGTTT
* ** * ** * * * * **
14027529 TTA-C--AAGTTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--
373 TTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGT
* * * **** ** ** * * ** * *
14027586 AT-GGTCACAAAA-TCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAATAAAA
429 TTGGGGC-CAAAACTCCT-T-C-CAAAAAAATTTTA--AAAAATC--CTGAAC-CG-CAA-AAAG
* ** * ** * *** * ** * ** * * ** *
14027649 ATTCAAGGATCATGTCTACCAAGTTTG-GGGCTAAAAC-TCTTTCCGAAAAAATTTTA--AAAAA
483 TTTCAAAAATC--GT-GA--AAAATAGAAAAC-GAGTCGTCTTGCC-ATGAAACTTCACGTGAAG
* * * ** * * * * *
14027710 TCTCGAACTGGAAAAACTT-T-TGAAAATCGTGA-AA--AATAGAAAACGAGTCGTCTTG--C-C
541 GCT-TAA--GGGACCA-TTGTATG--AAT--TTACAAGCCATA-AAAATG-G-CAT-TGGCACGC
* * * * *** ** * * *** * *
14027767 ATGAAATTTCACGTGAAGTCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTG
594 A-GAAA--T-A--TGAAG----ATGTGCCTA---AACCCACCTACCA-CCCTATCGAT-CCA-CG
* * *** * ** * * *** * *** * *
14027832 GCATGCAGAAATATGAAGATGTGC-CTAAACCCACCTACAACCCTATCGATCCACGTCTTGCGCA
643 GCTTGC-G---CATCCCG-TCT-CTCT-GGCCGACGTAGTGCTCGCCCG--CC-CGTC-CGC-CC
* * ** * * ** * * * **
14027896 TCTCGTATC-TCTGGCCGACGTAGTGCACGCCCGCCCGCCCACCCGCTCGTT-TC-GTCGGTTGG
696 GCTCGTTTCGTC-GGTTGGCTTAG-GCA--TACG---G---A---GTTCATTCCCAGTC--TAAG
* * * * * * * * * * *
14027958 CTT-AG-GCATACT-A-AGTTCATGCCCAGTCTAAGATCAGACTGGATCG-AG-GGTTGTGA-CA
746 ATTGAGACCAGACTGAGGGTT-GTG-GCAG-C-AGGATC-GACAGCA-CGCAGAGG--GGGACCC
*** ** * ** **** ** **
14028016 GTAGGATCGGCAGCACGCTG-AGGGGGATCCGATCGATCCCCGGCTTGCGCATCCCTCCCCTCTG
803 GGCCGATCCCCGGCTTGC-GCATCCCG--CCCCTC--TGGCCGGC-T--G-A-------------
* * * *
14028080 GTCGGCTGAGCACCCGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
846 ----GC---G--CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
14028145 CAA
902 TAA
* *
14028148 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * *
14028212 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCTGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
14028277 AACCTGACCGGAC-GCATTGGGGTTCCGACGATCGGAGGGCTA-GGGGGTGTGTGCACATGATGT
130 AACCTGACCGG-CGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGT
*
14028340 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
14028405 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
14028470 TGGAGACACTTTTTTGAAATGGTCACAAAATCTTGTACCCTTCGACTTTTTAGCTGAATTCTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
14028535 GTCCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
14028600 AATTTTAAAAAATCCTAAACCGCAAAAAGTTTCCAAAATCGTGAAAAACAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
14028665 TGCCAGGAAACTTCA-TTCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
14028729 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * **
14028794 CGCATCCCGTCTCTCT-GCTTGGCGTAGTGCCCGTCCACCCG-CTCGTACGCTCGTTTCGTCGGT
648 CGCATCCCGTCTCTCTGGC-CGACGTAGTGCTCGCCCGCCCGTC-CGCCCGCTCGTTTCGTCGGT
* * ** * * * **
14028857 TGGCTTAGGTAAACGGAGTTCATTCAGAGTCCAAGA-TCAGACCGGACTGAGGGTTACGGCAGCA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCA
** * * * * * ** * *
14028921 GGATCGGTAGCATGTAGAGGTGGACCTGACCGATCCTAGGCTTGCACATCCCGCCCCTCTGGCTG
776 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
14028986 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
14029050 GCATACGGAGTTAATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *** * *
14029115 CTCAGGCATTTGCTGGTGCCGTTTTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
14029180 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGCGGGGGGTGTACGCACACGA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CC----AGGGGGGTGTGCGCACATGA
*
14029245 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
14029310 TCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAATGTGTTTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
14029375 AAATGGGGACA-TGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
321 AAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
14029439 TTTTGTGGATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCTTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
** * *
14029504 AAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
450 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*** * *
14029569 GTCTTGCCATGAAACTTCTTTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAT
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
14029634 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** ** * * * **
14029699 TTGCGCATCCCATCTCTCTAGCCGGCGTAG-GCATACG-GAGTTCAT--TCCCACTC--TAAGAT
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-T-CGCCCGCCCGTCCGCCCGCTCGTTTCG-T
* * ** * *
14029758 C---AGAC-T-GG-AGTGA-GG-GTTGC---GGCAG-C-AGGATCGTA-ACC--AC-GTAGAGG-
707 CGGTTGGCTTAGGCA-T-ACGGAGTT-CATTCCCAGTCTAAGATTG-AGACCAGACTG-AG-GGT
* * * * ** * * * * *
14029805 -G-GG-ACCCGG-CCGATC-CCTGGCTTGA---GCATCCCGCCCG-TCTGGCCGG-TTGAGCA-C
766 TGTGGCAGCAGGATCGA-CAGCACGC-AGAGGGGGA-CCCGGCCGATC--CCCGGCTTGCGCATC
* ** * ** * * * * * * ** *
14029859 CCGCACGCTC-GTTTCGTC-GATTG-GCGTACG--C-ATACG-GAGTTCA-TT-CCCAGT--GTA
826 CCGC-CCCTCTG-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACG-G
* ** * * *
14029913 AGATCA-GACCGGATCGAG
887 AGTTCATTCCCAG-TCTAA
** ** * * ** ** ** *
14029931 GGTTACGGCAGCTGGA-TCGGCAGCACGT-AGAGGGGGACCCAACCGA----T-CCCCAACTTAC
1 GCATACGG-AG-TTCATTC-CCAG-TC-TAAGA-TCGGACCGGACCGAGGGTTGCGACAGC--AC
* * * * * * ** * ** * * * *
14029989 TTATCCCGTCGCTCTGGCCGACTGAGC-GCTGGTACACTCAT-TTCGT-GGGTTG-ACTTAGGCA
58 --ATGCTG-GGCTC-GGGC-A-TGTGCTGGTGCCACATTTTTCTTCATCGGG--GCAC-CA-TCG
* * * * * **** * * **
14030050 TACGGAGTTCATTCCCAGTC-TA-AGCAT-A-CGGAGTTCAGTCCCAG-T-CTAAGATCGGCTCA
113 T-CGGAG--CA-T--C-GTCGGAGAACCTGACCGGCG-GCA-TTGGGGTTCCGACGATCGG--GG
* * * * * * * * ** * *
14030109 GACC-GAGGGTTGCGGCAGCACATGCTGGGCTCA-GGCATGTGCTGGTGC-T-GCATTTTTCTTC
167 GGCCAGGGGGGTG-TGC-GCACATGATGTGC-GATGG---GTGCTGGTACTTGGCCCTTAT-AT-
* * ** * * * ** * ***
14030170 GTCGGGGCACC-ATCGCCGGAGCATA--TCAGAGAACCTGACGACGGCATGGGGTTCCGA-CGAT
224 -T--GGCCCCCTATC-CCTCATCAAACCTC-GAGAA-CTCAC-ACCCCCT----TAAAGAGC-AT
** * ***** * * *** * * * * * * *
14030231 CAGGGGGCCGACGGGGGGTGTGC-GCACA-T-GATGTGTGATGGGTGCTGGTACT-TGG-CCCTT
277 TTGAGATTTTAC---AGGTTTGCTGC-CAGTAGCCAT-TAAAGTGT-CT-GAAATGGGGACACTT
* ** ** * ** * ** *** ***
14030291 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
335 -T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATT
** ** * ** * ** *
14030356 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGA-CATTTTTTTCAA--AT-GG
384 TT-----TTTG-TG-CA-T-GCCAACAAA---AAT-ACAA--GGATCACGTCTACCAAGTTTGGG
* * *** *
14030417 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
434 GC-CAAAA-C---T-C-CTTCCA------A----AA--AAATT-T---T----A-AAAAAT-C-C
* * ** * * * * * **
14030482 GGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTAGAACCA
469 TGAAC-CG-C-AAAAAGTTT-----CAAAAAT-CGT--G-AAAAA---TAGAAAA-CGAG-TCGT
** *** * *** * ** * * * *
14030547 CAAAAAGTTTTGAAA-ATCA--TGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTG
517 C---TTGCCATGAAACTTCACGTGAAGGCT--TAAGGGA-CCA--TTG-TATG-AA-TTTAC---
* * *** * * * * **
14030609 AAGGCC-TAAGGGACCATTGTGTGAATTTAAAGGCCATAAAAATGGCATCAGCATGCAGAAATAT
568 AA-GCCATAA---A--A--ATG-GCATTGGCACG-CAGAAATAT-G-A--AG-ATG-TG---CCT
**** * * * * * * * * *
14030673 GAAGATGTGCCTA-AAGCC-ACCTA-CCAC-CCTAT-CG-ATCCACGGCTTGCGCAT-CCCGTCT
614 -AA-ACCCACCTACCACCCTATCGATCCACGGCT-TGCGCATCC-CGTC-T-CTC-TGGCCG--A
* * * * * * ** * * *
14030731 CTCTGGCCGACGTAGTGCCCGCCCACCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAG
670 C-GTAG-TG-C-TCG-CCCG-CCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * ** **
14030796 TTTATTCCCAGTCTAAGA-TCATACCGGACTGAGGGTTGCGACAGCAGGATCGGTAGCATACAGA
729 TTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA
** * * * *
14030860 GGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACACT
794 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
14030925 CGTTCCGTTGGTTGACTTAGGCATACGGACTTCATTCCCAGTCCAA
859 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14030971 G-AT--TG-G---A---CC-G----A-A-C--A----A---AGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** *
14031010 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
14031064 ACCTGACAGGCGACATTGGGGCTCCGACGATCGGGGGGGCCA-GGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * * *
14031128 CGATGGGTGCTGTTACTGGGCCCTTATATTGGCCCCCTTATCCTTCATCAAACCTTGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
14031193 CACCCCCTTAAAAAGTATTTGAGATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14031258 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
14031323 TTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAATACACTTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * * *
14031388 AATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
14031453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATGTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
14031518 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACTTACCACGCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *** *
14031583 GTATCCCATCTATCTAGCCGACGTAGTGCCCGCCCGCCAACCCACCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * * ** *
14031648 CTTAGGCATATGGAGTTCATTCCCAATCTAAGATCG-GACCAAACTGAGGGTTGCAGTAGCAGGA
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGA
* * * *
14031712 TC-AGCAGTACACAG-GGGGGAACCCGGTCGATCCCC-GCTTGCGCATCCTGCCCCTCTGGCCGG
779 TCGA-CAGCACGCAGAGGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
14031774 CTGAGCGCCCGCACGCTTGTTCCATGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *** * *
14031837 GCATACAGAGTTCATTCTCAGTCCAAGATCGGACCGGGTTGAGGGTTGC-AGTAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* *
14031901 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * *
14031965 GAACCTGACCGGCGACATTGGGGTTTCGATGATCGGGGGGGTC-GGGCGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGG-GGGTGTGCGCACATGAT
*
14032029 GTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCACC-CATCAAACCTCGAGAAC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAAC
* * * *
14032093 ACACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTA
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
14032158 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
14032223 TTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * ** *
14032288 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
14032353 TCTTGCCATGAAACTTCATGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
14032418 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * ** * ***
14032483 TGCGCATCCCGTCTCTCTAGTCGGCATGGTGCCCGCTTGCCCGCCCGTGTGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGT
* * * ** *
14032548 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAACCAGA-TCAAGGGTTACGGTAGC
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACT-GAGGGTTGTGGCAGC
* * ** * ** * ** *
14032611 AGGATCGGCAGCACGAAGAGGGGGACCCTACCGATTCTTGGCTTGTGCATCCTACCCTTCTGGCC
775 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
14032676 GGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
14032741 GCATACGAAGTTTTTTCCCAGTCTAAGATCAGA-CAGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
14032805 CTCGGGCATGTGCTGGTGCCGCATTTCTCGTT-GTCGGGGCACCATCGCCGAAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTC-TTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
** * * * *
14032869 AACCTGACCGATGGCATTGGGGTACC-AGCGATCAGGGGGCC-GGGGGGTGTGCACAAATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGT
* * * *
14032932 GCAATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
14032997 CACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
14033062 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** ** *
14033127 ATGCATCCCAACAAAAATACAAGGATCATGTCTAAAAAGTTTGGGGTGAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
14033192 AATTTTAAAAAATCC-CATACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCTGA-ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
14033256 TTGCCATGAAGCTTCACGTGGAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
14033321 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
14033386 CGCATCCCGTCTCTCTGGTCGACGTAGTGCTCGCCCGCCAGCCCGCTCGCTCATTTAGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* * * ** *
14033451 GCTTTA-GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGATTGAGGGTTGCAGCAGTAG
713 GC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * * * **
14033514 GATCGATAGCATGCAGAAGGGGACCAGGTCGATCCCC-GCTTGTGCATCCCAACCCTCTGGCCGG
777 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
14033578 TTGAGCACCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
14033641 GCATACGAAGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * **
14033706 CTTGGGCATCTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
14033771 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGAGGAGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTG
* *
14033836 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
14033901 ACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTACTGCCAGTAGCCATTAAAGTTTCAGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
14033966 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14034031 TGCATGCCAACAAAAAAACAAGGATCACATCTACCATGTTTGGGG-CAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * ** *
14034095 ATATTAAAAAATCCCGAACCTCAAAAAGTTTCGAAAATTATGAAAAATAGAAAACGGGTCGTCTT
455 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
14034160 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14034225 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** * * * * *
14034290 CATCCCGTCTCTCTGGTTGGTGTAGTGCCCGCCCGTCCGTCCGCCCACTCATTTCGTCGGTTAGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
14034355 TTAGGCATACGGAGTTCATTCGCAGTCTAAGATCG-GATCAGACCAAGGGTTGTGGCAGCAAGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGAT
* * * * * * *
14034419 C-AGCAGCATGCAGAAGGGGACCTGGCCGATCCCCAGCTTACGTATCCCACCCCTCTGGCCGGCT
780 CGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** *
14034483 GAGCGCTCGCACGCTCGTTTCGCCGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
844 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14034544 -CTATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGTGTTGCGACAGCACATACTGG
1 GC-ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* ** * *
14034608 GCT------TGTGC-CGT-----ATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
14034661 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGTGTGCGCACATGATGTA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * *
14034724 CGATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
14034789 ACCCCCTTAAGGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
14034854 GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
14034890 TACGGAGTTC
Statistics
Matches: 14331, Mismatches: 3150, Indels: 2743
0.71 0.16 0.14
Matches are distributed among these distances:
861 53 0.00
862 31 0.00
863 60 0.00
864 17 0.00
865 28 0.00
866 145 0.01
867 179 0.01
868 68 0.00
869 121 0.01
870 417 0.03
871 127 0.01
872 12 0.00
873 21 0.00
874 12 0.00
875 32 0.00
876 44 0.00
877 127 0.01
878 37 0.00
879 9 0.00
880 14 0.00
881 37 0.00
882 16 0.00
883 15 0.00
884 24 0.00
885 28 0.00
886 60 0.00
887 67 0.00
888 213 0.01
889 62 0.00
890 56 0.00
891 162 0.01
892 610 0.04
893 256 0.02
894 437 0.03
895 139 0.01
896 214 0.01
897 260 0.02
898 235 0.02
899 191 0.01
900 419 0.03
901 698 0.05
902 800 0.06
903 1609 0.11
904 944 0.07
905 727 0.05
906 312 0.02
907 301 0.02
908 587 0.04
909 131 0.01
910 41 0.00
911 85 0.01
912 56 0.00
913 84 0.01
914 12 0.00
915 7 0.00
916 6 0.00
917 8 0.00
918 13 0.00
919 3 0.00
920 11 0.00
921 10 0.00
922 4 0.00
923 18 0.00
924 17 0.00
925 27 0.00
926 12 0.00
927 28 0.00
928 7 0.00
929 9 0.00
930 12 0.00
931 16 0.00
932 31 0.00
933 19 0.00
934 21 0.00
935 12 0.00
936 24 0.00
937 10 0.00
938 2 0.00
939 8 0.00
940 15 0.00
941 7 0.00
942 12 0.00
943 8 0.00
944 8 0.00
945 7 0.00
946 28 0.00
947 14 0.00
948 19 0.00
949 15 0.00
950 11 0.00
951 20 0.00
952 13 0.00
953 23 0.00
954 22 0.00
955 8 0.00
956 12 0.00
957 17 0.00
958 12 0.00
959 23 0.00
960 14 0.00
961 6 0.00
962 21 0.00
963 10 0.00
964 3 0.00
965 7 0.00
966 10 0.00
967 31 0.00
968 18 0.00
969 12 0.00
970 19 0.00
971 15 0.00
972 14 0.00
973 14 0.00
974 18 0.00
975 22 0.00
976 33 0.00
977 25 0.00
978 30 0.00
979 23 0.00
980 21 0.00
981 28 0.00
982 20 0.00
983 38 0.00
984 28 0.00
985 25 0.00
986 18 0.00
987 34 0.00
988 10 0.00
989 19 0.00
990 33 0.00
991 13 0.00
992 31 0.00
993 27 0.00
994 16 0.00
995 38 0.00
996 22 0.00
997 25 0.00
998 7 0.00
999 15 0.00
1000 9 0.00
1001 16 0.00
1002 12 0.00
1003 20 0.00
1004 11 0.00
1005 14 0.00
1006 17 0.00
1007 11 0.00
1008 19 0.00
1009 17 0.00
1010 19 0.00
1011 24 0.00
1012 18 0.00
1013 16 0.00
1014 5 0.00
1015 14 0.00
1016 15 0.00
1017 14 0.00
1018 2 0.00
1019 15 0.00
1020 20 0.00
1021 23 0.00
1022 15 0.00
1023 46 0.00
1024 273 0.02
1025 259 0.02
1026 235 0.02
1027 198 0.01
1028 129 0.01
1029 193 0.01
1030 416 0.03
1031 318 0.02
1032 259 0.02
1033 151 0.01
1034 154 0.01
1035 182 0.01
1036 190 0.01
1037 190 0.01
1038 223 0.02
1039 186 0.01
1040 141 0.01
1041 133 0.01
1042 122 0.01
1043 93 0.01
1044 83 0.01
1045 73 0.01
1046 60 0.00
1047 67 0.00
1048 56 0.00
1049 80 0.01
1050 85 0.01
1051 273 0.02
1052 451 0.03
1053 178 0.01
1054 541 0.04
1055 295 0.02
1056 551 0.04
1057 111 0.01
1058 95 0.01
1059 411 0.03
1060 266 0.02
1061 28 0.00
1062 17 0.00
1063 31 0.00
1064 41 0.00
1065 99 0.01
1066 35 0.00
1067 41 0.00
1068 38 0.00
1069 80 0.01
1070 23 0.00
1071 32 0.00
1072 22 0.00
1073 178 0.01
1074 42 0.00
1075 50 0.00
1076 27 0.00
1077 27 0.00
1078 47 0.00
1079 52 0.00
1080 32 0.00
1081 170 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACTGAGGGTTGTGGCAGCAGGATC
GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14026386 original size:26 final size:26
Alignment explanation
Indices: 14026356--14026408 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14026346 GTTCACTTAG
*
14026356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
14026382 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
14026408 G
1 G
14026409 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:14026526 original size:317 final size:316
Alignment explanation
Indices: 14025949--14026542 Score: 827
Period size: 317 Copynumber: 1.9 Consensus size: 316
14025939 GCGGCAGTAC
** *
14025949 GCAGAGGGGGACCCTACCGATCCCCGGTTTACAAATCCCGCCCCTCTGGCCGGCTGAGCGCCCAC
1 GCAGAGGGGGACCCTACCGATCCCCGACTTACAAATCCCGCCCCTCTAGCCGGCTGAGCGCCCAC
* * * * *
14026014 AGGCTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACAGAGTTCA
66 AGGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAATTCA
* * * *
14026079 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGGCTTGGGCATGTGTT
131 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAAGTGCT
* * *
14026144 GGTGCCATATTTTTCTTTGCCGGGGCACCATCACCAGAGCATCGCTGGAGAACCTGACCGGCGGC
196 GGTGCCAGATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCTGGAGAACCTAACCGGCGGC
*
14026209 ATTGGGGTTCTGACGATCAGACCAGACCGAAGGTTGTGACAGCAAGATCGACAGCAT
261 ATT-GGGTTCCGACGATCAGACCAGACCGAAGGTTGTGACAGCAAGATCGACAGCAT
* ** * *
14026266 GCAGAGGGGGA-CCTGGCCGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCCG
1 GCAGAGGGGGACCCT-ACCGATCCCCGACTTACAAATCCCGCCCCTCTAGCCGGCTGAGCGCCCA
* *
14026330 C-GCGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATT
65 CAG-GCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAATT
* * * *
14026394 CATTCCCAGTCTAAGATCGGACCGGATCGAGGGTT-CCGATAGCAGATGCTGGGCTCGGGCAAGT
129 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAG-CAGCACATGCTGGGCTCGGGCAAGT
* * * * *
14026458 GCTGGTGCCAGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ATCGGAGAACCTAACTGG
193 GCTGGTGCCAGATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCT-GGAGAACCTAACCGG
14026522 CGGCATTGGGTTCCGACGATC
257 CGGCATTGGGTTCCGACGATC
14026543 GGGGGGCTGG
Statistics
Matches: 241, Mismatches: 32, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
316 20 0.08
317 221 0.92
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (316 bp):
GCAGAGGGGGACCCTACCGATCCCCGACTTACAAATCCCGCCCCTCTAGCCGGCTGAGCGCCCAC
AGGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAATTCA
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAAGTGCT
GGTGCCAGATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCTGGAGAACCTAACCGGCGGC
ATTGGGTTCCGACGATCAGACCAGACCGAAGGTTGTGACAGCAAGATCGACAGCAT
Found at i:14029060 original size:26 final size:26
Alignment explanation
Indices: 14029024--14029076 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14029014 GTTGACTTAG
*
14029024 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
14029050 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
14029076 G
1 G
14029077 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:14029171 original size:902 final size:902
Alignment explanation
Indices: 14026223--14034889 Score: 6852
Period size: 902 Copynumber: 9.6 Consensus size: 902
14026213 GGGTTCTGAC
* * ** * * * * *
14026223 GATCAGACCAGACCGAAGGTTGTGACAGCAAGATCGACAGCATGCAGAGGGGGA-CCTGGCCGAT
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGA-GGGGATCCTGACCGAT
** * * * * * * *
14026287 CCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCCGCGCGCTCGTTTCATGGGTTCAC
65 CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
14026352 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGGACC
130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
14026417 GGATCGAGGGTT-CCGATAGCAGATGCTGGGCTCGGGCAAGTGCTGGTGCCAG-ATTTTTCTTCG
195 AGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCG
** * *
14026480 TCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTAACTGGCGGCATT-GGGTTCCGACGATCG
258 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCG
* * * * * *
14026544 GGGGGC-TGGGGTTGTGCGAACATGATGGGCGATGGGTTCTGGTACTTGGCCTTTATATTGGCCC
322 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
14026608 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTGCAGGTTT
387 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
14026673 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
452 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
14026738 ACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATTCCAAAAAAAAAAAACAAGGATCACAG-CT
517 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCAC-GTCT
** * * * *
14026802 ACCAAGTTTCAGGCCAAAACTCCTTCTGAAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTT
579 ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
* * * *
14026867 CAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCTTGAAACTTCACCTGAAGGCTTAAGGGA
643 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
14026932 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCAAA
708 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * *
14026997 ACCCACCTACCACCCTATC-AACCAACGGCTTGTGCATCCCGTCTCTCTAGC-CAGCGTTGTGCC
773 ACCCACCTACCACCCTATCGATCC-ACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCC
*
14027060 CGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTG
837 CGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
14027121 A
902 A
* * * * * * * * * **
14027122 GATCAGACCATACCGAGGGTTGCGGTAGCAGGATCGACAACACGCAAAGGGGGA--CTCGGTCGA
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGA-GGGGATCCT-GACCGA
** * * *
14027185 TCCCT-GATTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTG
64 T-CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
14027249 ACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GATC-G-
128 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * *
14027291 ---GACTGAGGGTTGTGGCAGCCCATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
193 CCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
14027353 -CTAGGG-----T-G-C----CATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCTG-CAAT
258 TC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GCATTGGGGTTCC-GACGAT
* * *
14027405 CGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGCCCCTTATATTG
320 C-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
14027470 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
383 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
14027535 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
448 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
14027600 TTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAATAAAAATTCAAGGATCATGTC
513 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * * *
14027665 TACCAAGTTTGGGGCTAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACTGGAAAAACTTT
578 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTT
** * * *
14027730 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGTCTTAAGGGA
643 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
14027795 CTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
708 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * * * * *
14027860 ACCCACCTACAACCCTATCGATCCACGTCTTGCGCATCTCGTATCTCTGGC-CGACGTAGTGCAC
773 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCC
** ** *
14027924 GCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACTAAGTTCATGCCCAGTCTAA
838 GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * *
14027989 GATCAGACTGGA-TCGAGGGTTGTGACAGTAGGATCGGCAGCACGCT-GAGGGGGATCC-GATCG
1 GATCAGACCAGACT-GAGGGTTACGGCAGCAGGATCGGCAGCATG-TAGA-GGGGATCCTGACCG
** * * * * * *
14028051 ATCCCCGGCTTGCGCATCCCTCCCCTCTGGTCGGCTGAGCACCCGCACACTCGTTTCATAGGTTG
63 ATCCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
14028116 ACTTAGGCATACGGAGTTCATTCCTAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
128 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
14028181 CCAGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
193 CCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
14028246 CCGGGGCACCATCGCCTGAGCATCGTCGGAGAACCTGACCGGACGCATTGGGGTTCCGACGATCG
258 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG-CGCATTGGGGTTCCGACGATCG
* ** *
14028311 GAGGGCTAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
322 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
14028376 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
387 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
14028441 GCTGCTAGTAGCCATTAAAGTGTTTGAAATGGAGACACTTTTTTGAAATGGTCACAAAATCTTGT
452 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
14028506 ACCCTTCGACTTTTTAGCTGAATTCTTTTGTCCATGCCAACAAAAATACAAGGATCACGCCTACC
517 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
14028571 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCCAA
582 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* * * * *
14028636 AATCGTGAAAAACAGAAAACGAGTCATCTTGCCAGGAAACTTCA-TTCGAAGGCTTAAGGGACCA
647 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-GAAGGCTTAAGGGACCA
*
14028700 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
711 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * *
14028765 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT-GCTTGGCGTAGTGCCCGTC
776 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGCC
* * * * * ** *
14028829 CACCCGCTCGTACGCTCGTTTCGTCGGTTGGCTTAGGTAAACGGAGTTCATTCAGAGTCCAA
841 CGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14028891 GATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGTAGCATGTAGAGGTGGA-CCTGACCGAT
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGAGG-GGATCCTGACCGAT
* *
14028955 CCTAGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
65 CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
14029020 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACT
130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** * * * **
14029085 AGACCGAGGGTTGTGGCAGCATATGCTGGGCTCAGGCATTTGCTGGTGCCGTTTTTTTCTTCGTC
195 AGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
14029150 GGGGCACAATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
260 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCGGG
* * *
14029215 GGGACCGGGGCGGGGGGTGTACGCACACGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTG
324 GGG--C---G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
14029280 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAG
383 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
14029345 GTTTGCTCCCAGTAGCCATTAATGTGTTTGAAATGGGGACA-TGTTTTTCAAATGGTCACAAAAT
448 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAAT
* * * *
14029409 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGGATGCCAAAAAAAATACAAGGATCACAT
512 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
14029474 CTACCAAGTTTGGGGCTAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTT
577 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
***
14029539 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTTTTGAAGGCTTAAGGG
642 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** *
14029604 ACCATTGTATGAATTTACAAGCCACAAAATTGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
707 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
*
14029669 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGC-CGGCGTAG-G--
772 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCC
*** * * *** * * * * *
14029730 CATACG---G--AGT----TC-ATTC--CCACT--CTAAGATCAGACTGGAG-TGAGGGTTGCGG
837 CGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAG-GCATAC-GGAGTTCA---TT-C-C
*
14029780 CAG-C-AG
895 CAGTCTAA
** * * * * * * * *
14029786 GATC-GTAACC--ACGTAGAGGGGGAC-CCGGC-CGATC-CCTGGC-T-T-GA--GCATCCCGCC
1 GATCAG--ACCAGAC-T-GAGGGTTACGGCAGCAGGATCGGC-AGCATGTAGAGGGGATCCTGAC
* *** * * *
14029840 CG-T-CT-GGC---CG-GTTGAGCACC-C--G-C--------------ACGCTCGTTTCGTCGAT
61 CGATCCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * *
14029880 TGGCGTACGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGA--TCGAGGGTTACGGCAG-
126 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-CGGAGTTC-A---TT-C-CCAGT
* * ** * *** * * * *
14029942 CT-GGATCGGCAGCACGTAGAGGGGGACCCAACCGATCCCCAACTTACTTATCCCGTCGCTCTGG
182 CTAAGATCGG-ACCA-G-ACCGAGGGTTGC-A--G-----CAGC--AC--ATGCTG-GGCTC-GG
* * * *** * ** * *
14030006 CCGACTGAGC-GCTGGTACACTCAT-TTCGT-GGGTTGACTTAGGCAT--ACGGAGTTCATTC-C
230 GC-A-TGTGCTGGTGCCGCATTTTTCTTCGTCGGG--G-C--A-CCATCGCCGGAG--CA-TCGC
*** * * ** * * ** * * * * *
14030065 CAGTCTAAGCAT-A-CGGAG--TT-CAGTCCCAGTCTAAGATCGGCTCAGACCGAGGGTTGCGGC
284 C-GGAGAA-CCTGACCGGCGCATTGGGGTTCC-G---ACGATCGG--GGGGCGGGGGGGTG-TGC
* * * * ** * * * *
14030125 AGCACATGCTGGGCTCA-GGCATGTGCTGGTGC-T-GCATTTTTCTTCGTCGGGGCACC-ATCGC
340 -GCACATGATGTGC-GATGG---GTGCTGGTACTTGGCCCTTAT-AT--T--GGCCCCCTATC-C
** * * * ** * *** ** * ***** *
14030186 CGGAGCATA--TCAGAGAACCTGACGACGGCATGGGGTTCCGA-CGATCAGGGGGCCGACGGGGG
394 CTCATCAAACCTC-GAGAA-CTCAC-ACCCCCT----TAAAGAGC-ATTTGAGATTTTAC---AG
* *** * * * * * * * * ** *
14030248 GTGTGC-GCACA-T-GATGTGTGATGGGTGCTGGTACT-TGG-CCCTTATATTGGCCCCCTATCC
448 GTTTGCTGC-CAGTAGCCAT-TAAAGTGT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-G
* * ** * ** *** ***
14030308 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
502 GTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA
** ** * ** * ** * *
14030373 GTAGCCATTAAAGTGTCTGAAAAGGGGA-CATTTTTTTCAA--AT-GGTCACAAAATCTTGTACA
551 -T-GCCAACAAA---AAT-ACAA--GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-
** * **
14030434 CTT-CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCA
601 CTTCCGA------A----AA---AATT-T---T----A-AAAAATCCCAA--A-C-CG-C-AAAA
* * * * * ** ** ***
14030497 GGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTAGAACCACAAAAAGTTTTGAAA
638 AGTTT-----CAAAAAT-CAT--G-AAAAA---TAGAAAA-CGAG-TCGTC---TTGCCATGAAA
* *** * ** * * * *
14030562 -ATCA--TGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCC-TAAGGGAC
686 CTTCACGTGAAGGCT--TAAGGGA-CCA--TTG-TATG-AA-TTTAC---AA-GCCATAA---A-
* * * * ** ****
14030623 CATTGTGTGAATTTAAAGGC-CATA-AAA-ATGGCATCAGCATGCAGAAATATGAAGATGTGCCT
735 -A--ATG-GCA-TT---GGCACACAGAAATAT-G-A--AG-ATG-TG---CCT-AA-ACCCACCT
* * * * * * * * * * **
14030685 A-AAGCC-ACCTA-CCAC-CCTAT-CG-ATCCACGGCT-TGCGCATCCCGTC-TCTCTGGCCGAC
781 ACCACCCTATCGATCCACGGCT-TGCGCATCC-CGTCTCT-C-TAGCTCGGCGT-AGT-GCC--C
* ** * * *
14030742 GTAGTGCCCGCCCACCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTTATTCCCAG
838 -----GCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
14030807 TCTAA
898 TCTAA
* * * * * ** * *
14030812 GATCATACCGGACTGAGGGTTGCGACAGCAGGATCGGTAGCATACAGAGGGGGA-CCCGATCGAT
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGA-GGGGATCCTGACCGAT
* * * * *
14030876 CCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACACTCGTTCCGTTGGTTGA
65 -CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
14030940 CTTAGGCATACGGACTTCATTCCCAGTC----C--A---AG---ATT----G-----GA-CCGAA
129 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
14030983 CA-A---AGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGT
194 CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
14031044 CGGGG---CA----C----CATCGCCGGAGAACCTGACAGGCGACATTGGGGCTCCGACGATCGG
259 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG-CATTGGGGTTCCGACGATC-G
** * *
14031098 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTGGGCCCTTATATTGGCCC
322 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
14031163 CCTTATCCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGTATTTGAGATTTTATAGGTT
387 CC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
14031228 TACTGCCAGTAGCAATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTG
451 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
14031293 TACACTTGGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTAC
516 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * *
14031358 TAAGTTTGGGGCCAATACACTTTCCAAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAA
581 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
*
14031423 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
646 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * **
14031488 ATGTATGAATGTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
711 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * * * * *
14031553 AACTTACCACGCTATCGATCCACGGCTTGCGTATCCCATCTATCTAGC-CGACGTAGTGCCCGCC
776 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGCC
** ** * *
14031617 CGCCAACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAA
841 CGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *** * * * **
14031679 GATCGGACCAAACTGAGGGTTGCAGTAGCAGGATCAGCAGTACACAGGGGGGAACCCGGTCGATC
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGAGGGGATCCTGACCGATC
** * * * *
14031744 C-CCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTCCATGGGTTGACT
66 CTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
14031808 AAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCCAAGATCGGACCG
131 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
*** * * ** *
14031873 GGTTGAGGGTTGCAGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCG
196 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
14031938 GGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTTCGATGATCGGGG
261 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG-CATTGGGGTTCCGACGATC-GGG
* *
14032003 GGGTCGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCC
324 GGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
14032068 CTATCACC-CATCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTT
388 CTATC-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
14032132 GCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
452 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
14032197 ACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACC
517 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * **
14032262 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAA
582 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* *
14032327 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTTAAGGCTTAAGGGACCAT
647 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** *
14032392 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCC
712 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * **
14032457 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG-TCGGCATGGTGCCCGCTT
777 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGCCC
**
14032521 GCCCGCCCGTGTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14032582 GATCAAACCAGA-TCAAGGGTTACGGTAGCAGGATCGGCAGCACGAAGAGGGGGACCCT-ACCGA
1 GATCAGACCAGACT-GAGGGTTACGGCAGCAGGATCGGCAGCATGTAGA-GGGGATCCTGACCGA
* * * ** * * *
14032645 TTCTTGGCTTGTGCATCCTACCCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGA
64 TCCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * ** *
14032710 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTTTTTCCCAGTCTAAGATCAGA-
129 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
14032774 CAGACCAAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCGTT-G
194 CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCG
* * *
14032838 TCGGGGCACCATCGCCGAAGCATCGCCAGAGAACCTGACCGATG-GCATTGGGGTACC-AGCGAT
258 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG--GCGCATTGGGGTTCCGA-CGAT
* * * * * *
14032901 CAGGGGGCCGGGGGGTGTGCACAAATGATGTGCAATGGGTGCGGGTACTTGGCCCTTATATTGGC
320 CGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
14032966 CCCCTATCCCTCATCAAACCTTGAGAAGTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGT
385 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
14033031 TTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
450 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
14033096 GTACACTTGGAGTTTTTAGCTGAATTTTTTTATGCATCCCAACAAAAATACAAGGATCATGTCTA
515 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** ** * *
14033161 AAAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCATACCACAAAAAGTTTCA
580 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
** * *
14033226 AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGGAGGCTTAAGGGACC
645 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** *
14033291 AATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
710 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * *
14033356 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGTCGACGTAGTGCTCGC
775 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGC
* * *
14033420 CCGCCAGCCCG-CTCGCTCATTTAGTCGGTTGGCTTTA-GCATACGGAGTTCATTCCCAGTCTAA
840 CCGCCCGCCCGTC-CGCTCGTTTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * * **
14033483 GATCAGACCGGATTGAGGGTTGCAGCAGTAGGATCGATAGCATGCAGAAGGGGA-CCAGGTCGAT
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAG-AGGGGATCCTGACCGAT
** * ** * * * *
14033547 CC-CCGCTTGTGCATCCCAACCCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGAGTTGAC
65 CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
14033611 TTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACC
130 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *** * *
14033676 GGATCGAGGGTTATGGCAGCACATGCTGGGCTTGGGCATCTGCTGGTGCCGCATTTTTCTTCGTC
195 AGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
14033741 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGAG
260 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATCG-G
* *
14033806 GAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCC
323 G-GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
14033871 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTT
387 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
14033936 ACTGCCAGTAGCCATTAAAGTTTCAGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGT
452 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
14034001 ACACCTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAAACAAGGATCACATCTACC
517 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
14034066 ATGTTTGGGG-CAAAACTCCTTCCGAAAAAATATTAAAAAATCCCGAACCTCAAAAAGTTTCGAA
582 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* *
14034130 AATTATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
647 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
**
14034195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
712 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* * * *
14034260 ACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT-GGTTGGTGTAGTGCCCGCCC
777 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGCCC
* * * * * * *
14034324 GTCCGTCCGCCCACTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCGCAGTCTAA
842 GCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** * * * *
14034385 GATCGGATCAGACCAAGGGTTGTGGCAGCAAGATCAGCAGCATGCAGAAGGGGA-CCTGGCCGAT
1 GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAG-AGGGGATCCTGACCGAT
* * * * * **
14034449 CCCCA-GCTTACGTATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGCCGGTTGA
65 -CCTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
14034513 CTTAGGCATACGGAGTTCATTCCCAATCTAA-CTATACGAAGTTCATTCCCAGTCTAAGATCAGA
129 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * * *
14034577 CTGGACCAAGTGTTGC-GACAGCACA---T--ACT-GGGC---T--T-GTGCCGTATTTTTCTTC
193 CCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
14034629 ATCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
257 GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GCATTGGGGTTCCGACGATC
* * * *
14034694 GGGGGGC-CGGGGGTGTGCGCACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTTGCC
321 GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
14034758 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAGGAGCATTTCAGATTTTACAGGTT
386 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
14034823 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTG
451 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
14034888 TA
516 TA
14034890 TACGGAGTTC
Statistics
Matches: 6213, Mismatches: 1088, Indels: 945
0.75 0.13 0.11
Matches are distributed among these distances:
862 26 0.00
863 222 0.04
864 96 0.02
865 3 0.00
866 301 0.05
867 279 0.04
868 1 0.00
869 9 0.00
870 6 0.00
871 4 0.00
872 10 0.00
873 58 0.01
874 8 0.00
875 11 0.00
876 10 0.00
877 9 0.00
878 13 0.00
879 5 0.00
880 6 0.00
881 4 0.00
882 10 0.00
883 7 0.00
884 9 0.00
885 9 0.00
886 13 0.00
887 22 0.00
888 194 0.03
889 27 0.00
890 12 0.00
891 99 0.02
892 80 0.01
893 77 0.01
894 20 0.00
895 31 0.00
896 21 0.00
897 9 0.00
898 7 0.00
899 133 0.02
900 133 0.02
901 686 0.11
902 1145 0.18
903 1034 0.17
904 222 0.04
905 8 0.00
906 6 0.00
907 2 0.00
908 458 0.07
909 12 0.00
910 5 0.00
911 4 0.00
912 2 0.00
913 12 0.00
914 3 0.00
917 3 0.00
918 11 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 1 0.00
923 10 0.00
924 6 0.00
925 1 0.00
926 1 0.00
927 7 0.00
928 1 0.00
929 3 0.00
930 6 0.00
931 5 0.00
932 9 0.00
933 3 0.00
934 1 0.00
935 6 0.00
936 2 0.00
939 1 0.00
941 1 0.00
944 2 0.00
945 5 0.00
947 3 0.00
948 8 0.00
949 5 0.00
950 6 0.00
951 3 0.00
952 1 0.00
953 7 0.00
954 1 0.00
955 2 0.00
956 6 0.00
957 9 0.00
958 1 0.00
959 1 0.00
960 1 0.00
961 1 0.00
962 11 0.00
963 3 0.00
966 3 0.00
967 12 0.00
968 2 0.00
969 4 0.00
970 5 0.00
971 8 0.00
972 3 0.00
974 6 0.00
975 3 0.00
976 11 0.00
977 12 0.00
978 18 0.00
979 10 0.00
980 7 0.00
981 3 0.00
982 2 0.00
983 2 0.00
984 13 0.00
985 9 0.00
986 9 0.00
987 13 0.00
988 4 0.00
989 6 0.00
990 14 0.00
991 4 0.00
992 15 0.00
993 12 0.00
994 4 0.00
995 2 0.00
996 7 0.00
997 7 0.00
998 2 0.00
999 4 0.00
1000 2 0.00
1001 5 0.00
1002 6 0.00
1003 8 0.00
1004 8 0.00
1005 7 0.00
1006 5 0.00
1007 10 0.00
1008 10 0.00
1009 8 0.00
1010 7 0.00
1011 5 0.00
1013 2 0.00
1015 3 0.00
1016 2 0.00
1022 1 0.00
1023 4 0.00
1024 276 0.04
1025 272 0.04
1026 250 0.04
1027 206 0.03
1028 136 0.02
1029 201 0.03
1030 424 0.07
1031 320 0.05
1032 265 0.04
1033 154 0.02
1034 155 0.02
1035 187 0.03
1036 190 0.03
1037 190 0.03
1038 225 0.04
1039 191 0.03
1040 144 0.02
1041 133 0.02
1042 123 0.02
1043 95 0.02
1044 83 0.01
1045 74 0.01
1046 60 0.01
1047 67 0.01
1048 56 0.01
1049 81 0.01
1050 85 0.01
1051 274 0.04
1052 451 0.07
1053 178 0.03
1054 541 0.09
1055 295 0.05
1056 551 0.09
1057 150 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGAGGGGATCCTGACCGATC
CTAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGCATTGGGGTTCCGACGATCGGGGG
GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTCGGCGTAGTGCCCGCCCGCCC
GCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14030015 original size:159 final size:159
Alignment explanation
Indices: 14029722--14030073 Score: 397
Period size: 159 Copynumber: 2.2 Consensus size: 159
14029712 CTCTCTAGCC
* * *
14029722 GGCGTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGACTGGAGTGAGGGTTGCGGCAGCAGG
1 GGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGGTTACGGCAGCAGG
* ** *** **
14029787 ATCGTAACCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGAGCATCCCGCCCGTCTGGCCGGT
66 ATCGGAACCACGTAGAGGGGGACCCAACCGATCCCCAACTTGAGCATCCCGCCCGTCTGGCCGAC
* *
14029852 TGAGCACCCGCACGCTCGTTTCGTCGATT
131 TGAGCACCCGCACACTCATTTCGTCGATT
* * *
14029881 GGCGTACGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGA-TCGAGGGTTACGGCAGCTG
1 GGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGT-GAGGGTTACGGCAGCAG
* * *
14029945 GATCGGCAGCACGTAGAGGGGGACCCAACCGATCCCCAACTT-A-CTTATCCCG-TCGCTCTGGC
65 GATCGGAACCACGTAGAGGGGGACCCAACCGATCCCCAACTTGAGC--ATCCCGCCCG-TCTGGC
* ** * * *
14030007 CGACTGAGCGCTGGTACACTCATTTCGTGGGTT
127 CGACTGAGCACCCGCACACTCATTTCGTCGATT
* *
14030040 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGCGTAGGCATACGGAGTTCATTCCCAGTCTAAG
14030074 CATACGGAGT
Statistics
Matches: 160, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 4 0.03
159 155 0.97
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
GGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGGTTACGGCAGCAGG
ATCGGAACCACGTAGAGGGGGACCCAACCGATCCCCAACTTGAGCATCCCGCCCGTCTGGCCGAC
TGAGCACCCGCACACTCATTTCGTCGATT
Found at i:14030083 original size:26 final size:26
Alignment explanation
Indices: 14030047--14030099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14030037 GTTGACTTAG
*
14030047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
14030073 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
14030099 G
1 G
14030100 ATCGGCTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:14031841 original size:26 final size:27
Alignment explanation
Indices: 14031806--14031859 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
14031796 CATGGGTTGA
14031806 CTAAGGCATACAGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
*
14031833 CTAA-GCATACAGAGTTCATTCTCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
14031859 C
1 C
14031860 CAAGATCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTCCCAGT
Found at i:14032752 original size:26 final size:26
Alignment explanation
Indices: 14032715--14032767 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14032705 GTTGACTTAG
* *
14032715 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
14032741 GCATACGAAGTTTTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14032767 G
1 G
14032768 ATCAGACAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14033652 original size:26 final size:26
Alignment explanation
Indices: 14033615--14033667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14033605 GTTGACTTAG
14033615 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACTGAGTTCATTCCCAGTCTAA
*
14033641 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
14033667 G
1 G
14033668 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:14034556 original size:26 final size:26
Alignment explanation
Indices: 14034520--14034569 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14034510 TGACTTAGGC
*
14034520 ATACGGAGTTCATTCCCAATCTAACT
1 ATACGAAGTTCATTCCCAATCTAACT
*
14034546 ATACGAAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATTCCCAATCTAA
14034570 GATCAGACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAACT
Found at i:14034925 original size:26 final size:26
Alignment explanation
Indices: 14034889--14034939 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14034879 AAAATCTTGT
14034889 ATACGGAGTTCATTGCC-AGTCTAAGC
1 ATACGGAGTTCATT-CCTAGTCTAAGC
14034915 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
14034940 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:14035816 original size:26 final size:26
Alignment explanation
Indices: 14035780--14035832 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14035770 GTTGACTTAG
*
14035780 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
14035806 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14035832 G
1 G
14035833 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14036681 original size:26 final size:26
Alignment explanation
Indices: 14036651--14036703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14036641 GTTAACTTAG
14036651 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
14036677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
14036703 G
1 G
14036704 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:14037684 original size:902 final size:894
Alignment explanation
Indices: 14035891--14037934 Score: 2826
Period size: 902 Copynumber: 2.3 Consensus size: 894
14035881 CATCGTCGAG
* * * *
14035891 GCATCGTCAGAGAACCTGACTGGGGGA-ATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTCT
1 GCATCGTCGGAGAACCTGAC-CGGTGACATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGGTGT
* * *
14035954 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATGAAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
14036019 CCTCCAGAACTCACACCCCCTT-AAAGCGTAATTGAGATTTTACAGGTTTACTGCCAGTAGCCAT
129 CCTCAAGAACTCACACCCCCTTCAAAGC--ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
* *
14036083 TAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCATG-AAATCTTGTACACTTTGATTTTT
192 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-GAAAATCTTGTACACTTTGACTTTT
* * *
14036147 TAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTGGGGCTAA
256 TAGCTGAATTATTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTGGCGCCAA
* *
14036212 AACGCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
321 AACGCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
14036277 AAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
386 AAAAACGAGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACA
* * *
14036342 AGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCTTAT
451 AGCCATAAAAATGGCATTGGCAAGCACAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
* * * * *
14036407 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCACTCCCGCCCGCT
516 CGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCT
* * *
14036472 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTAGACCAGACTGAGGG
581 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGG
** * * * * * * ***
14036537 TTCTGGTAGTAGGATCGACAGCACACAGAGGTCGAGCCGATCGATCTCCGGCTTGTGCATCCCGC
646 TTCTGACAGCAGAATCGACAGCACACAGAGGGCGACCCGACCGATCCCCGGCTTACACATCCCGC
* *
14036602 CCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATT
711 CCCACTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATT
* * * * *
14036667 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGTCCGAGGGTTGCAGCAGC
776 ACCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACAGCAGC
*
14036732 ACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTCTTCGCTGGGGCACCAT
841 ACATGCTGGGCTCGGGCATGTGTTGGTGACGCATTTTCTTCGCTGGGGCACCAT
* *
14036786 CACAGGAGCATCATCGGAGAACCTGACCGGTGACATTGGGGTTCCGATGATCGGGGGGTCGGGGG
1 -------GCATCGTCGGAGAACCTGACCGGTGACATTGGGGTTCCGATGATCGGGGGGCCGGGGG
*
14036851 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCA
59 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
14036916 TCAAACCTCGAGAACTCACACCCCTTTACAAAGCATTTGAGATTTTACAAGTTTGCTACCAGTAG
124 TCAAACCTCAAGAACTCACACCCCCTT-CAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
* * *
14036981 CCATCAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGACT
188 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGACT
* * * * *
14037046 TTTTAGCTGAATTATTTTATGGATGCCAAAAATAATACAAGGATCACGTCTACCAACTTTGGCGC
253 TTTTAGCTGAATTATTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTGGCGC
* * * *
14037111 CAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCATGAAA
318 CAAAACGCCTTCT-GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
* * * *
14037175 AATAAAAAATGAGTCATCTTGCCTTGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATC
382 AATAAAAAACGAGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATC
* *
14037240 TACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCTACCTACCACC
447 TACAAGCCATAAAAATGGCATTGGCAAGCACAAATATGAAGATGTACCTAAACCCACCTACCACC
*
14037305 CTATCGATCTATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTC-CGCCCGC
512 CTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-CACGCCCGC
* * * * *
14037369 TCG-TACGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA
576 CCGCT-CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
** *
14037433 TGAGGGTTGC-GACAGCAGAATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACAC
640 TGAGGGTT-CTGACAGCAGAATCGACAGCACACAGAGGGCGACCCGACCGATCCCCGGCTTACAC
* * * *
14037497 ATCCCG-GCCACTGGCCGACTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGGA
704 ATCCCGCCCCACTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGA
* *
14037561 GTTCATT-CGCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAACTGGACCAATGGT
769 GTTCATTAC-CAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCAAGGGT
* * * * *
14037624 TACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGACGTATTTTTTTTC-ATCGGGGCACCAT
832 TACAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGACGCA-TTTTCTTCGCT-GGGGCACCAT
* *
14037688 ---T-GTCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCAGGGGGGCCGAGGGGGGTGT
1 GCATCGTCGGAGAACCTGACCGGTGACATTGGGGTTCCGATGATC-GGGGGGCCG-GGGGGGTGT
* * *
14037749 GCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTTATCCCTCAACAA
64 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAA
14037814 ACCTCAAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGC-AGCCAGTAGCCA
128 ACCTCAAGAACTCACACCCCCTTCAA-AGCATTTGAGATTTTACAGGTTTGCTA-CCAGTAGCCA
* *
14037878 TTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
191 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTT
14037935 GACGTGAAGG
Statistics
Matches: 1015, Mismatches: 109, Indels: 44
0.87 0.09 0.04
Matches are distributed among these distances:
891 37 0.04
892 9 0.01
893 61 0.06
894 119 0.12
900 2 0.00
901 157 0.15
902 623 0.61
903 2 0.00
904 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATCGTCGGAGAACCTGACCGGTGACATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCAAGAACTCACACCCCCTTCAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGACTTTTTAGCT
GAATTATTTTATGCATGCCAAAAAAAATACAAGGACCACATCTACCAAATTTGGCGCCAAAACGC
CTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAA
CGAGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCA
TAAAAATGGCATTGGCAAGCACAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
CATGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCGTTT
CATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTCTG
ACAGCAGAATCGACAGCACACAGAGGGCGACCCGACCGATCCCCGGCTTACACATCCCGCCCCAC
TGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTACCAA
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACAGCAGCACATG
CTGGGCTCGGGCATGTGTTGGTGACGCATTTTCTTCGCTGGGGCACCAT
Found at i:14039221 original size:26 final size:26
Alignment explanation
Indices: 14039184--14039236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14039174 GTTGACTTAG
*
14039184 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
14039210 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
14039236 G
1 G
14039237 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:14039682 original size:903 final size:904
Alignment explanation
Indices: 14037931--14041288 Score: 4662
Period size: 903 Copynumber: 3.7 Consensus size: 904
14037921 AATCTTGTAC
* * *
14037931 ACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCAAG
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
14037996 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
66 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
* * * * * ** *
14038061 CTCTCTGGTCGGCGTAGTGCCTGCCCGTCCGCCCGCCCACTCGTTTCGTCGACTGGCTTAGGCAT
131 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCAT
* * * * * * *
14038126 ACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGTAC
196 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCAGGATCGGCAGCAC
** * * * *
14038191 GCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACC-CCTCTGGCCGGTTGAGCACCCG
261 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTTCTGGCCGGCTGAGCACCCG
* * * * *
14038255 CACGCTCGTTTTGTGCGTTAACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTT
326 CACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
14038320 ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTG
391 ATTCCAAGTCTAAGATCAGACCGGACCAAGGGTTACGGACAGCACATGCTGGGCTCGGGCATGTG
* * * * * * * *
14038385 TTGGTGTCGCATTTTTCTTCATCGAGGCACCATCGTTGAAGCATCACCGGAGAACCTGAACGACG
456 TTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCG
*
14038450 GCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
521 GCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
14038515 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACA-CCCCTTAAAGAG
586 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
14038579 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
651 CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
14038644 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAA
716 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
14038709 AACACAAGGATCACGTCTACGAAGTTTGGGGCCTAAACTCCTTCCGAAAAAATTTTAAAAAATCC
781 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
14038774 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
846 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
14038833 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
14038898 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCACGGCTTGTGCATCCCGT
66 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
* * * * *
14038963 CTCTCTGGCCGGCGTTGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTGGGTTGACTTAGGCAT
131 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCAT
* * * * * * *
14039028 ATGGAGTTCATTCGCAAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTACCAGCATCAGCAGCA
196 ACGGAGTTCATTC-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCAGGATCGGCAGCA
* * * * * * * *
14039093 CGTAGAGTGGGACCCAGTCGATCCCAGGGTTGTGCATCCCGCC-CTTCTGGCCGACTGAGCACTC
260 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTTCTGGCCGGCTGAGCACCC
* *
14039157 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTT
325 GCACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * *
14039222 CATTCCAAGTCTAAGATCGGACCGGACGGAGGGTTACAG-TAGCACTTGCTGGGCTTGGGCATGT
390 CATTCCAAGTCTAAGATCAGACCGGACCAAGGGTTACGGACAGCACATGCTGGGCTCGGGCATGT
* * * * *
14039286 GTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCCGATCGGC
455 GTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * *
14039351 GGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGG
520 GGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
14039416 TACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGA
585 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
14039481 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
650 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
14039546 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAA
715 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
14039611 AAATACAAGAATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
780 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
**
14039676 CCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
845 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* * *
14039736 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGTCATTGGCACG
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
14039801 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
66 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
* * * * *
14039866 CTCTCTGGCCGGCATAGT----GCCTGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAAGCAT
131 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCAT
** * *
14039927 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCAAGATCGGCAGCAC
196 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCAGGATCGGCAGCAC
* * * *
14039992 GTAGAGGGGGACCCGGTCGATACCCGACTTGCACATCCCGCCAC-TCTGGCCGGCTGAGCACCCG
261 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTTCTGGCCGGCTGAGCACCCG
* * *
14040056 TACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGGAGTTC
326 CACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
14040121 ATTCCCAA-TCTAAGATCAGACTGGACCAAGGATTATGG-TAGCACATGCTGGGCTCGAGCATGT
391 ATT-CCAAGTCTAAGATCAGACCGGACCAAGGGTTACGGACAGCACATGCTGGGCTCGGGCATGT
* ** * * * * * *
14040184 GTTGGTGCCATATTTTTCTTCATTGGGGCACCATCGCCAGAGCATCGCCAGAGAACGTGACCGGT
455 GTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
*
14040249 GGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTG
520 GGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
14040314 GTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
584 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
14040379 AGAATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACATTTTT
649 AGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
14040444 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAAA
714 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * *
14040509 AAAATACAAGGCTCACGTTTACCAAGTTTGGGGCCAAAACTCCTTACGAGAAAATTTTAAAAAAA
779 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAA
** * ** * * *
14040574 TCTTGAACTGCAAAAAGAGTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCCTGAA
843 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
* *
14040636 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATG
1 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * **
14040701 TAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCATCCCAC
66 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
* * ** * *
14040766 CTCTTTGGTCGGCATAGTGCCCAG-TTGCCCGCCCGCCCGCTCGTTTCATCGGTCGACTTAGGCA
131 CTCTCTGGCCGGCATAGTGCCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCA
* * ** * * ** ** *
14040830 TACAGAGTTCATTCCCAGTCTAAGATTAGACCAGATTGAGGGTTACGGTAGTAGGATCGGTGGAA
195 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCAGGATCGGCAGCA
*
14040895 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCTCTT-TGGCCGGCTGAGCACCC
260 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTTCTGGCCGGCTGAGCACCC
* * * * * *
14040959 GCGCGCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAAGCATATGGAGTT
325 GCACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
14041024 CAGT-CACAGTCTAAGATTAGACCGGACCAAGGGTTGC-GACAGCACATGTTGGGCTTGGGCATG
390 CATTCCA-AGTCTAAGATCAGACCGGACCAAGGGTTACGGACAGCACATGCTGGGCTCGGGCATG
* **
14041087 TGTTGGTGTCACATTTTTCTTCACCGGGG-----T-G-C----CATCGTCGGAGAACCTGACCGG
454 TGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* * * *
14041141 CGGCATTAGGGTTCTGGCGATCGGGACGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
519 CGGCATTGGGGTTCTGACGATCGGG-GGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
14041206 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
582 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
14041271 AGAGCATTTGAGATTTTA
647 AGAGCATTTGAGATTTTA
14041289 ATGGCTACTG
Statistics
Matches: 2181, Mismatches: 258, Indels: 42
0.88 0.10 0.02
Matches are distributed among these distances:
892 3 0.00
893 42 0.02
894 111 0.05
897 1 0.00
898 274 0.13
899 329 0.15
900 191 0.09
902 379 0.17
903 574 0.26
904 275 0.13
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (904 bp):
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCACCAGGATCGGCAGCAC
GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTTCTGGCCGGCTGAGCACCCG
CACGCTCGTTTAGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCAAGTCTAAGATCAGACCGGACCAAGGGTTACGGACAGCACATGCTGGGCTCGGGCATGTG
TTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCG
GCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
Found at i:14042080 original size:26 final size:26
Alignment explanation
Indices: 14042051--14042106 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14042041 CTGGTCCGAT
14042051 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
14042077 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTAAG
14042103 CTTA
1 CTTA
14042107 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14043698 original size:26 final size:26
Alignment explanation
Indices: 14043660--14043712 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14043650 CTGGTCTGAT
*
14043660 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
14043686 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
14043712 C
1 C
14043713 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:14044598 original size:26 final size:26
Alignment explanation
Indices: 14044558--14044610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14044548 CTGATCCGAT
14044558 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
14044584 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14044610 C
1 C
14044611 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14045198 original size:905 final size:904
Alignment explanation
Indices: 14042913--14049414 Score: 8163
Period size: 901 Copynumber: 7.3 Consensus size: 904
14042903 GCTGAGCATG
* * * *
14042913 TGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
14042978 CCGACGAAACGAGCGAACGAGC-G-GGAGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGC
66 CCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
14043041 AAGTCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
14043106 CATTTCTATGGCTTGTAAATTCATACAATGG-CCCATAAGCCTTCACGTGAAGTTTCTTGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * ** *
14043170 ACGACTCATTTTTTATTTTTCATGATTTTCAAAA-TTTTTTTGGTTCGGGATTTTTTAAAATTTT
261 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
14043234 TTCGGAAGG-TGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACA
326 TTCGGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAA
* *
14043298 AAAAAATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
390 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
14043363 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGT
455 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
14043428 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCCAGTACCAGCACCCATCACA
520 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
14043493 CATCATGTGCGCACACCCCGCCCGACCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGT
585 CATCATGTGCGCACA-CCC-CCCG-CCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGT
* * * * * * * *
14043557 TCTCTGACGATGCTCCGGTGATGGTGCTCCGATGAAGAAAAATGCGGCACCAGCACATGCTCAAG
646 TCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * * *
14043622 CCTAGCATGTGCTACTGCAACCCTTGGTCTGGTCTGATCTTACACTAGGAATGAACTCCGTATGC
711 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14043687 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGTC
776 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
14043752 GGCCAGAGGGGCGGGATGCGTAAACCGGGGACCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
841 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *** * *
14043816 TGGTGTTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14043881 CCGATGAAACGAGCGGGC--G-GGC---GGGCTGGCACTACGTCTGCCAGAGAGACGGGATGCGC
66 CCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
14043940 AAGCTGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
14044005 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14044070 ACGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATATT
261 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TT
* * * * *
14044135 TTTC-GAAGG-TGTTTTGGCCCCAAACTTGGAAGTCATGATCCTTTTATCTTTT-TTAGCATGCA
325 TTTCGGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCA
* * *
14044197 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCTC
388 AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
14044262 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
453 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
14044327 GTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
518 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * *
14044392 CACATCATATGCGCACACCCCCTGGCCCCCTGATCGTCGGAACGCCAATGCCGTCGGTTAGGTTC
583 CACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
14044457 TCCGGTGATGCTCCGGCGATGGTGCCACGACGAAGAAAAATGTGGCACTAGCACATGCCCGAGCC
648 TCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * * * * * *
14044522 TAGCATGTACTGTCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCCTATGCTT
713 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * ***
14044587 AGACTGGTAATGAACTCCGTATGCCTAAGTCAACGCATGAAACAAGCGTGCCAACGCTCAGCCGG
778 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * ** *
14044652 CCTGAGGGGCGAGATGCGCAAGTCGGGGAACAGCCGGGTCCTTCTTTGCGTGCTGCCGATCC
843 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
14044714 TGCTGACGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
**
14044779 TAGACGAAACGAGCGGGCGGGCAGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
66 CCGACGAAACGAGCGGGCGGGC-GGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
14044844 CAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTT-TGGCATGCCAAT
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAAT
* *
14044908 ACCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
194 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
14044973 AGACGACTCATTTTCTATTTTTCGTGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATT
259 AGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
14045038 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAA
324 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAA
*
14045103 AAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACC
389 AAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14045168 ATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGT
453 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * * *
14045232 GTGAGTTCTTGAGGTTTGAAGAGTGATAAGGGGCCAATATAAGGTCCAAGTACTAGCACCCATCG
518 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
14045297 CACATCATGTGCGCACACCCCCC-CACCCCTGATCGTTGGAACCCTAAT---GCC-ATC--G--A
583 CACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * ** *
14045353 T-C-ATG-TTCTCCAGCAATGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCTCGAGCC
648 TCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* *
14045415 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGTTT
713 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * *
14045480 AGATTGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTTAGCCGG
778 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
14045545 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGACCC
843 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
14045607 TGCTGTCGTAACCCTCGATCGGGTCTGATCTTAGACTGGGGATGAACTCCGTATGGCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
14045672 CCGACGAAACGAACGGGCGGGCGTGC---GGGCAAGCACTATGCCAGCCAGAGAGAAGGGATGCG
66 CCGACGAAACGAGCGGGCGGGCG-GCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
14045734 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTCTACCTGCCAATG
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
14045799 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
195 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
14045864 GACGACTCGTTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTT
260 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* **
14045929 TTTCGGAAGGCA-TTTTGGCCCCAAACTTGGTGGTAGATGTGATCCTTGTATTTTTGTTGTTATG
325 TTTCGGAAGG-ATTTTTGGCCCCAAAC-T--TGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
14045993 CACAAAAAAGTTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-T
386 CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
14046057 CCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGT
451 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
14046122 GTGTGAGTTCTCAAGATTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCAT
516 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** ** * *
14046187 CGCACATCATGTGCGCACA---------CCCCCGATCACCGGAAGGCCATTACCGCCGGTCAGG-
581 CGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** *
14046242 --T----TG-T--T-CGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAG
646 TCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
** * *
14046297 CCCAGCATGTGCTGCCTTAACCCTCAGTCCGGTCTGATCTTAGACT-GG--T--A------ATG-
711 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
14046350 --A-AC------T---CT--GTATGCC-AATGTCAACCCATGAAATGAGCGT-CTGGGTGCTGAG
776 TTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCATGAAACGAGCGTGC-GGGCGCTCAG
* * * * **
14046399 CCGACCAGAGGGGCGGGATGTGCAAGCCAGGGATCGGTCGAGTCCCCCTCTATGTGCTGCCGATC
839 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
14046464 C
904 C
* * * * * *
14046465 TGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGTCTGGGAATGAACTCGGTATGCCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14046530 CCGACAAAATGAGCAGGCGTGC-G-GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
66 CCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
14046593 AAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * *
14046658 CAGTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGACTTCACTTGAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14046723 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAATATTT
261 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAA-ATTT
*
14046788 TTTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
325 TTTCGGAAGG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAA
*
14046852 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCA
389 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14046917 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
454 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** * *
14046982 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGATCCAACTACCAGCACCCATCTC
519 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
14047047 ACATCATGTGCACACTCCCCCCGGCCCCCCGATCTTCGGAACCCCAATGCCGCCGGTCAGGTTCT
584 ACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * *
14047112 CCGGTGATGCTTCGACGATGGTGCCCCGATGAAGAAAAATGTGTCACCAGCACATGCCCGAGGCC
649 CCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* *
14047177 AACATGTGC-GACCGCAA-CC-C--TC--G---G-TC-----C---G---G---T-CATAT-CTT
714 AGCATGTGCTG-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
14047215 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGG
778 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** **
14047280 CTAGAGTGGCGGGATGCGCAAGCCGGGGATTGGTCGAGTCCCCCTCTATGTGCTATCGATCC
843 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14047342 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAA
1 TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * **
14047407 CCGACAAAACGAGCGGGC--G-GGC--A-GGCGGGCACTACGCCGGCCAGAGAGACGAGATGTTC
66 CCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
14047466 AAGACATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG-CAATG-
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
14047529 AATTTTTTATGGCTTGTAAATTAATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAA
196 CA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * ** * *
14047594 GACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTC
260 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * *
14047659 TTT-GGAAAGGAGATTTT-GCCCCAAACTTGGTACACGTGATCCTTGTATTTTTTTTGGCATGC-
325 TTTCGG-AAGGA-TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14047721 AAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
388 AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14047786 -TTTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
453 ATTTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
14047850 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
517 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
** * **
14047915 GCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGAAACCCCAATGCCATCGGTCAGGT
582 GCACATCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
14047980 TCTCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGTGGCACCAGGACATGCCCGAG
646 TCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * * *
14048045 CCCAGCATGTGCTACCACAACCCTCGGT-TCCGTCCGATCCTAGACTGGAAATGAACTCCGTATG
711 CCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14048109 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
775 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
14048174 CAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTC-GCACGCTACCGATCC
840 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * *
14048238 TGTTG-CAGCAACCCTCAAT-TCGG-CCTGATCTTATATTGGGAATGAACTCTGTATGCGTAAGC
1 TGCTGAC-GCAACCCTCGGTCT-GGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
14048300 CAACCGACGAAACGAGCGAGC---AGGCGGACGGGCGGGCACTATGCCGACCAAAGAGACGGGAT
63 CAACCGACGAAACGAGCGGGCGGGCGGCGGA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
14048362 GCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCTA
127 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* * *
14048427 ATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTTAAATTTCATGG
192 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
14048492 CAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAA
257 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA
* ** *** *
14048557 TTCTTTCGGAAGGGGTTTTGGCGATAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
322 TTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
14048622 ACAAAAAAAGTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
387 AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14048687 CATTTTAGACACTTTAATGGCCACTGGCATCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
452 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * *
14048752 TCTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCGAATATAAGGGCCAAGTTCCAGCACACATC
517 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
14048817 GCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGACGGAACCCCAATGCCGCCGGTCAGGTT
582 GCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
14048882 CCCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCTCGAGC
647 CTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * *
14048947 CCAGCATGTGCTGCCACAACCATCGGTTTGGTTTGATCTTAGACTGGGAATCAACTCCGTATGCT
712 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
14049012 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCC
777 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CC
* * * *
14049077 -GCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGTTGCTGATCC
841 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14049140 TGCT-ACCGCAACCCTCTGTCCGGTCCGATCATAGACTGGGAATGAACTCCGTATGCGTAAGCCA
1 TGCTGA-CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** *
14049204 ACCAACGAAACGAGCGGACGGGC-G-GGTGGGC--TC-C-ACGTCGGTGAGAGAGTCGGGATGCG
65 ACCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
14049263 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
14049328 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCGTGGCAA
195 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
14049393 GACGGCTCGTTTTCCATTTTTC
260 GACGACTCGTTTTCTATTTTTC
14049415 GGAAGGAGTT
Statistics
Matches: 4874, Mismatches: 583, Indels: 289
0.85 0.10 0.05
Matches are distributed among these distances:
856 91 0.02
857 138 0.03
858 369 0.08
859 30 0.01
860 3 0.00
862 1 0.00
863 3 0.00
865 1 0.00
866 32 0.01
867 2 0.00
868 1 0.00
869 6 0.00
870 207 0.04
871 161 0.03
872 124 0.03
873 96 0.02
874 1 0.00
875 6 0.00
876 4 0.00
877 223 0.05
878 3 0.00
879 1 0.00
880 1 0.00
881 3 0.00
883 2 0.00
884 100 0.02
885 1 0.00
886 1 0.00
887 6 0.00
888 2 0.00
889 1 0.00
890 237 0.05
891 27 0.01
892 164 0.03
893 324 0.07
894 2 0.00
895 6 0.00
896 83 0.02
897 102 0.02
898 477 0.10
899 129 0.03
900 151 0.03
901 683 0.14
902 298 0.06
903 80 0.02
904 32 0.01
905 380 0.08
906 79 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
TGCTGACGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGCGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:14045488 original size:26 final size:26
Alignment explanation
Indices: 14045452--14045502 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14045442 TGGTCTGATC
* *
14045452 TTAGAATGGGAATGAACTCCGTATGT
1 TTAGAATGGGAATAAACTCCATATGT
*
14045478 TTAGATTGGGAATAAACTCCATATG
1 TTAGAATGGGAATAAACTCCATATG
14045503 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGAATGGGAATAAACTCCATATGT
Found at i:14048115 original size:26 final size:26
Alignment explanation
Indices: 14048085--14048135 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14048075 CGTCCGATCC
14048085 TAGACTGGAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
* *
14048111 TAGACTGGGAATTAACTCCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
14048136 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:14048893 original size:25 final size:25
Alignment explanation
Indices: 14048869--14048915 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14048859 ACCCCAATGC
*
14048869 CGCCGGTCA-GGTTCCCCGACGATG
1 CGCCGGTCATGGTGCCCCGACGATG
* *
14048893 CTCCGGTGATGGTGCCCCGACGA
1 CGCCGGTCATGGTGCCCCGACGA
14048916 AGAAAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (25 bp):
CGCCGGTCATGGTGCCCCGACGATG
Found at i:14049020 original size:26 final size:26
Alignment explanation
Indices: 14048984--14049036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14048974 TTGGTTTGAT
14048984 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
14049010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14049036 C
1 C
14049037 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14050747 original size:26 final size:26
Alignment explanation
Indices: 14050711--14050763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14050701 TCGGTTCGAT
14050711 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14050737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14050763 C
1 C
14050764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14053403 original size:26 final size:26
Alignment explanation
Indices: 14053374--14053423 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14053364 ATCCGATCTT
14053374 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
14053400 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14053424 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:14054414 original size:15 final size:15
Alignment explanation
Indices: 14054394--14054428 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
14054384 AACCCGATCG
14054394 ATCCTCGGCTTACGC
1 ATCCTCGGCTTACGC
*
14054409 ATCCTCGGCTTGCGC
1 ATCCTCGGCTTACGC
14054424 ATCCT
1 ATCCT
14054429 GCCCCTCTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.40, G:0.20, T:0.29
Consensus pattern (15 bp):
ATCCTCGGCTTACGC
Found at i:14054517 original size:26 final size:26
Alignment explanation
Indices: 14054480--14054532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14054470 GTTGACTTAG
*
14054480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14054506 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14054532 G
1 G
14054533 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14055413 original size:26 final size:26
Alignment explanation
Indices: 14055376--14055428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14055366 GTTGACTTAG
14055376 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
* *
14055402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
14055428 G
1 G
14055429 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:14056039 original size:890 final size:892
Alignment explanation
Indices: 14054060--14063256 Score: 10768
Period size: 894 Copynumber: 10.3 Consensus size: 892
14054050 CTTCCCATGC
* * *
14054060 AAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTTGTCTTCCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
14054125 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
14054190 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
14054255 TAGTGCCCGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
196 TAGT---------------CACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * * *
14054320 TTCAAAGTCTAAGATCGGATCGGACAAACGGTTGC-GACAGCAGGATCGGCAGCACGCAAAGGAG
246 TTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGG-G
* * * * *
14054384 AACCCGATCGATCCTCGGCTTACGCATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGC
309 -----G---GA-CC-CGGC---CG-ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* * * *
14054449 ACCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
360 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * * *
14054514 AGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCGGTAGCACGTGCTGGGCCCGGGCA
425 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
14054579 TGTGCTGGTACCGCATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCACTGGAGAACCTGACC
490 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAACCTGACC
* * ** * *
14054644 GGCGGCATTGGGGTTTCGACGATCAGGGGGGCCGGGGGTGGGGGTGTGTGCACGTGATGTGCGAT
554 GACGGCATTGGGGTTCCGACGATTGGGGGGGCC---GG-GGGGGTGTGCGCACATGATGTGCGAT
* *
14054709 GGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-CCC
615 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
14054773 CCTTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
680 CC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
14054838 GACACTTTTTTCAAATGGCCACAAAATATTGTACACTTGGAGTTTTTAGCAGAATGTTTTTGTGC
744 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
14054903 ATGCCAACAAAAATACAAGGATCACGTCTACCATGATTGGGGCCAAAACTCCTTCTGAAAAAATT
809 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
14054968 TAAAAAAATCTCGAACCGC
874 TTAAAAAATCCCGAACCGT
* * * * * *
14054987 AAAAAGTTTCAAAAATTGAGAAAAAT-GAAAAACGCGTCGTGTTACCATGAAACTTCACATGAAG
1 AAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
14055051 GCTTAGGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCTTGCAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
14055116 ATGTGCCTAAACCCACCTACCAGCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
14055181 GTAGT-ACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGA
195 GTAGTCACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * ** * *
14055245 TTGGATCAGACCAAGGGTTGC-GACAGCAGGATCGACAGCACGCAGAGGGGGATGCGGTCGACCC
260 TCGGACCAGACCAAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCC
* ** *
14055309 CCAGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGACTT
324 CCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * * *
14055374 AGGCATACGAAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
389 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
14055439 ACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
454 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * *
14055504 GGCACCATCATGGAAGCATCACCGAAGAATCTCACCGGCGGCATTGGGGTTCCGACGATTGGGGG
519 GGCACCATCACGG-AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGG
* * * * *
14055569 GGCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGATGGTACTTGGCCCGTATATT-ACCCCC
583 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
**
14055633 TAAT-CCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
648 T-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
14055697 TTGCCAGTAGCCGTTAAAGTCTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTA
712 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
14055762 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAA-AAAAATACAAGGATCACGTCTACCA
777 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
14055826 AGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
842 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
14055877 AAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGACTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
14055942 CTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
14056007 TGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTATCTTTGGCCGGTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* **
14056072 TAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATTA-GGAGTTCATTCCTAGTCTA
196 TAGT---CACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA-TACGGAGTTCATTCCTAGTCTA
* * ** * * * * *
14056136 AGATCAGACCGGACCAAGGGTTGGGGCAGCAAGATTGGCAGCATGCAGAGAGGGAACGCGGCCGA
257 AGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAG-GGGGACCCGGCCGA
* * * * *
14056201 TCCCCGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCGCTCGTACGCTTATTTCGTGGGTTGA
321 TCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
* * *
14056266 CTCAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGCTCATTCCCAGTCTAAGATCGGAC
386 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
14056331 CGGACTGAGGGTTGCCAGGCAGCACATGCTGGGGGCTCAGGCTTGT-CTGGTG-CGTATTTTTTC
451 CAGACCGAGGGTTG-C-GGCAGCACATGCT--GGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTC
* * * * *
14056394 ATCCGTCGGGGGCACCATCGCCGGAAGCATCGCCGGAG-AGCT---TGAC--C-----GG-T---
511 -TTCGTC-GGGGCACCATC-ACGG-AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
14056444 --GATT-GCGGGGCCGGGGTGGGTGGTGCACACATGATGTGCGATGGGTGCTGGTTACTTTGGCC
572 ACGATTGGGGGGGCCGGGG-GGGT-GTGCGCACATGATGTGCGATGGGTGCTGG-TAC-TTGGCC
* *
14056506 C-TATATTGGCCCCCTATCCCTCAT-AAACCACGAGAACTCACACCCCC-T-AAGAGCATTTTAG
633 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
14056567 ATTTTACAGG-TTGCTGCCA-TAAGCCATTAAGAATGTCTGAAAT-GGGAC-CGTTTTTTTCAAA
698 ATTTTACAGGTTTGCTGCCAGT-AGCCATTAA-AGTGTCTGAAATGGGGACAC--TTTTTTCAAA
14056628 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
759 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
14056693 CAAGGATCACGTCTACCAAGTTT-GGG--AGAA--CATTCC-AATATAAATTTTAAAAAATCCC-
824 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-A-AAATTTTAAAAAATCCCG
* *
14056751 AACTGC
887 AACCGT
* *** *
14056757 AAATAGTTTTGCAAATCATGAAAAATAG-AAACGAGTC--CTTGCCATGAAACTTC-CGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* **
14056818 TTTAAGATGGGACC-TT-TATGAATTTATGAGCCAT--AAAT--CA-TGGCATG-AG-AA-ATGA
66 CTT-A-A-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * ** * ** * * **
14056873 AG-TGTGCCTAAAACC-CTTACCGTCCTATC-TTAGACTGGCTT--GAATCCTTGTCT-T-AAGC
128 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCC-CGTCTCTCTGGC
* * * *
14056931 TCGACGATAGTGCCAACCCGGCGCTCGCCGCTGCGTTTCGTAGG-TGGC-TAGGTATA-GGA-TT
191 -CGGCG-TAGT--C-A-CC--CG--C-CCACT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * * ** *
14056992 CACGCAC-A-TCTAAGATTGGACC-GATCGAGGG-TGCAAC-GCAAGATCGATAGCAC-TA-A--
244 CATTC-CTAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGG
*** * * * * * *
14057048 AATACCTGG-CGAT-CCCGGCTTAGCG--TCCCGGCCCTCTGGCTGGCTGAGTGACCGCACGTTC
308 GGGACCCGGCCGATCCCCAGCTT-GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTC
* **
14057109 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCA
372 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
14057174 GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTACC
437 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * *
14057239 ACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCACAGGAGAACCTGACCGACGGCATTGGG
502 GCATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGG
* * * * *
14057304 GTTCCGGCGA-TCGGAGGGCCGGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGG
566 GTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
14057368 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCCTTAAAGAGCATTTG
631 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
14057433 AGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
696 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
14057498 ATCACAAAATCTTGTACACTTCGAATTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACA
761 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * *
14057562 AGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCGAAAC
826 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
14057627 AT
891 GT
* *
14057629 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGCGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
14057694 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
14057759 TGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTAGTCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * **
14057824 TAATGCTCGCCCGCCCGCCCGGCCGCTCATTTCATTAGTTGGCTTAGGCATACGGAGTTCATTCC
196 T-A-G-T----CACCCG--C--CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** ** *
14057889 CAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAATAGGATCGGCAGCACGCAGTGGGGGACCC
250 TAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
14057954 GACCCGATCACCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGT
315 G-GCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGT
* * * **
14058019 GTGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACAAAGTTCATTCCCAGTCTAAG
379 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * **
14058084 ATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTT
444 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTT
* * *
14058149 TTCTTCG-CTAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTTGGGTTCC
508 TTCTTCGTC-GGGGCACCATCA-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * * *
14058213 GACGATCGGGTGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACGTGGCCCTT
571 GACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
14058278 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
636 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
14058343 TTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAT
701 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
14058408 AAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
766 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
14058473 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAATAAATATTAAAAAATCTCGAACCGT
831 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* **
14058535 AAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
14058600 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * * *
14058665 TGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTGCGTATCCTGTCTCTCTGGTCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
14058730 TAGTGCCCGCCTGCCCACCTGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTGC
196 TAGT-CAC-CC-GCCCA-CT-----C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * *
14058795 TAGTCTAAGAT-AGACCAGACCGAGGGTTACGGTAGTAGGATCGACAGCACGCAGAGGGGGACCC
250 TAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * * * *
14058859 GATCGATCCCCAGCTTACGCATCCCACCCCTCTGGCTGGCTCAGTGCCCGTACGCTCATTTTGTG
315 GGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTG
* *
14058924 GGTCGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
380 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
14058989 GCGGACCGGACCGAGGGTTGTGGCAGAACATGCTAGGCTCGGGCATGTGCCGGTGCCGTATTTTT
445 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
14059054 CTTCGTCGGGGCA--AT-ATC---G--T---CGGAGAACCTGAACGGCGACATTGGGGTTCTGAC
510 CTTCGTCGGGGCACCATCA-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * *
14059108 GA-TCGGGGGGCC-AGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATA
574 GATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
14059171 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
639 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
14059236 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCTAATGGTCACAAA
704 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
14059301 ATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCAC
769 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * ** *
14059366 GTCCACCAAGCTTAGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAAATGC
834 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
** * *
14059425 AAAAAGTTTTGAAAATCGTGAAAACTAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
14059490 CTT-AGGGAACCACTGTATGAATTTACGAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
66 CTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
14059554 ATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGAC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
14059618 GTAGT-GCCCGCCCACCCGCTCGTTTCATCGGTTGTCTTAGGCATACGGAGTTCATTCCTAGTCT
195 GTAGTCACCCGCCCA----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
* * * * * * * *
14059682 AAGATCAGACCAGACTAAGGGTTACAGCAACAAGATCGGTAGCACGTAGAGGGGGACCCGACCGA
256 AAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* * * * * *
14059747 T-CCCAGGCTTTCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCTGCACGTTCATTTCGTGTGTTG
321 TCCCCA-GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
*
14059811 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
385 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
14059876 CCAGATCGAGGGTTACGACAGCACATGCTGGGCTTGGACATGTGCCGGTGCCGTATTTTTCTTCG
450 CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
14059941 TTGGGGCACCATCCCCGGAGCATCATCGGAGAACCTGACCGACGGCATTTGGGTTCCGATGATTG
515 TCGGGGCACCAT-CACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTG
* * *
14060006 GGGGGGTC-AGGGGGTGTGCAG-ACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGG
579 GGGGGGCCGGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
14060069 CCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC--------C----------TTA-A--
643 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
14060112 ------G---G-AG-CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAACCT
708 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
14060166 TGTACATTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCT
773 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
14060231 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAGCAGT
838 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* *
14060286 AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * ***
14060351 CTCAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
14060416 TGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTATGGTCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
14060481 TAGTGCACGCCCGCCGGCCCACCCGCTTTGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTC
196 TAGT-CA----C-CC-GCCCA----C-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * *
14060546 CCAGTCTAAGATCGAACCAGATCGAGCGTTGTAGCAGCAGGATCGACAGCGCACAGAGGGGGACC
249 CTAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * *
14060611 CGGCCGATCCCC-GTCTTGCGCATCACGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCA
314 CGGCCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCG
** * *
14060675 TGGGTTGACTTAGGCATACAAAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAA
378 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
*
14060740 GATCGGACCAGACCGAGGGTTGCGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
443 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
14060805 TTCTTCGTCGGGGCACCATCGCCGAAGCATCGCAGGAGAACCTGACCGACGGCATTAGGGTTTCG
508 TTCTTCGTCGGGGCACCATC-ACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** * * *
14060870 GTGATCGAGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
572 ACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
14060935 TATTGGCCCCTTATCCCTCATCAAACCTCGACAACTCACATCCCCTTAAAGAACATTTGAGATTT
637 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
14061000 TACAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
702 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
14061065 GAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATC
767 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
14061130 ACGTTTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
832 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
14061191 AAAAAGTTTCCAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
14061256 CTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAACGGTATTGGCATGCAAAAATGTGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
14061321 TGTGCCTAAACCCACCTATCGCCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTAGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
14061386 TAGTGCACACCCGCCCGCCCGCCCGCTCGTTTCGTCGGGTGGCTTAGGCATACGGAATTCATTCA
196 TAGT---CA--------CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
14061451 TAGTCTAAGATCGGACCAGTCTGAA-GGTTACAGCAGTAGGATAGGCAGCATGCAGAGGGGGACC
250 TAGTCTAAGATCGGACCAGAC-CAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* *
14061515 CGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG-TCGGCTGAGCGCCCGCACACTCATTTCG
314 CGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCATTTCG
* *
14061579 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
378 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
14061644 GATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTT
443 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
14061709 TTCTTCATCAGGGCACCATCGTCGGAGCATCACCGAAGAAGCTGGCCGACGGCATTGGGGTTCCG
508 TTCTTCGTCGGGGCACCATC-ACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * *
14061774 GC-AATCGGGGGGCC-TGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTA
572 ACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
14061837 TATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCACACCCTCTTAAAAAGCATTTAAGATTT
637 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
14061902 TACTGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGAGGACACTTTTTTCTAATGGTCACA
702 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
14061967 AAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATAAAAGGAT
767 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGAT
* * * * ** *
14062032 CACGTCCACCAGGCTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAAATGC
831 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
** *
14062094 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
14062159 CTTAAGGAACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
14062224 TGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
14062288 TAGT-GCCCGCCCACCCGCTCGTTTCATTGGTTGTCTTAGGCATACGGAGTTCATTCCTAGTCTA
196 TAGTCACCCGCCCA----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * * * * * * *
14062352 AGATCAGACCAGACTAAGGGTTACAGCAACAAGATCGGTAGCACGTAGAGGGGGACCCGACCAAT
257 AGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT
* * * *
14062417 -CCCAGTCTTTCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGTGTTGA
322 CCCCAG-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
*
14062481 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
386 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
14062546 CAGATCGAGGGTTGCGACAGCACATGCTGGGCTTGGACATGTGCCGGTGCCGTATTTTTCTTCAT
451 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
14062611 TGGGGCACCATCCCCGGAGCATCATCGGAGAACCTGACCGACGGCATTTGGGTTCCGATGATTGG
516 CGGGGCACCAT-CACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGG
* * * *
14062676 GGGGGTC-AGGGGGTGTGCACACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCC
580 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
14062740 CCCTATCCCTCCTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTAAGATTTTACAGGTT
645 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
14062805 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATGTTG
710 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
14062870 TACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
775 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
14062935 AAAGTTTGGGGCCAAAACACCTTCCGAAAGAATTTTAAAAAATCCCGAACCAT
840 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* *
14062988 AAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
14063053 CTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATTAGGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
14063118 TGTGCCTAAATCCACCTACCACCCTATCGATCAATGGCTTGTGCATCCCGTCTCTCTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
14063183 TAGTGACCGCACGCCCGCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCC
196 TAGT-----CA------CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
*
14063248 CAGTCTAAG
250 TAGTCTAAG
14063257 CAAACGGAGT
Statistics
Matches: 7135, Mismatches: 888, Indels: 518
0.84 0.10 0.06
Matches are distributed among these distances:
851 11 0.00
852 16 0.00
853 14 0.00
854 11 0.00
855 18 0.00
857 115 0.02
858 8 0.00
859 7 0.00
860 4 0.00
861 270 0.04
862 61 0.01
863 3 0.00
864 10 0.00
865 49 0.01
866 61 0.01
867 76 0.01
868 120 0.02
869 38 0.01
870 25 0.00
871 338 0.05
872 132 0.02
873 32 0.00
874 4 0.00
875 40 0.01
876 20 0.00
877 36 0.01
878 3 0.00
879 18 0.00
880 39 0.01
881 68 0.01
882 227 0.03
883 39 0.01
884 120 0.02
885 81 0.01
886 41 0.01
887 41 0.01
888 16 0.00
889 70 0.01
890 664 0.09
891 169 0.02
892 97 0.01
893 50 0.01
894 688 0.10
895 434 0.06
896 232 0.03
897 19 0.00
898 14 0.00
899 22 0.00
900 23 0.00
901 24 0.00
902 266 0.04
903 419 0.06
904 542 0.08
905 586 0.08
906 307 0.04
907 9 0.00
909 4 0.00
910 3 0.00
911 98 0.01
926 1 0.00
927 182 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTCACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
CGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCC
AGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
Done.