Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 88 of 190
Found at i:14056300 original size:26 final size:26
Alignment explanation
Indices: 14056271--14056323 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14056261 GTTGACTCAG
*
14056271 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
14056297 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14056323 G
1 G
14056324 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:14058964 original size:26 final size:26
Alignment explanation
Indices: 14058935--14058987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14058925 GTCGACTTAG
*
14058935 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14058961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14058987 G
1 G
14058988 AGCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14059853 original size:26 final size:26
Alignment explanation
Indices: 14059817--14059869 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14059807 GTTGACTTAG
14059817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14059843 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14059869 G
1 G
14059870 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14060717 original size:26 final size:26
Alignment explanation
Indices: 14060688--14060740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14060678 GTTGACTTAG
*
14060688 GCATACAAAGTTCTTTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
** *
14060714 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14060740 G
1 G
14060741 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:14061629 original size:26 final size:26
Alignment explanation
Indices: 14061592--14061644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14061582 GTTGACTTAG
14061592 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14061618 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
14061644 G
1 G
14061645 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14062522 original size:26 final size:26
Alignment explanation
Indices: 14062486--14062538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14062476 GTTGACTTAG
14062486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14062512 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14062538 G
1 G
14062539 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14065039 original size:26 final size:26
Alignment explanation
Indices: 14065010--14065062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14065000 GTTGAATTAG
*
14065010 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
14065036 GCATTTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14065062 G
1 G
14065063 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14068596 original size:26 final size:26
Alignment explanation
Indices: 14068560--14068612 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14068550 GTTGACTTAG
14068560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14068586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14068612 G
1 G
14068613 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14068974 original size:889 final size:890
Alignment explanation
Indices: 14063200--14070790 Score: 9145
Period size: 889 Copynumber: 8.6 Consensus size: 890
14063190 CGCACGCCCG
* * * * * *
14063200 CCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGCAAACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
14063265 GTTCATTCCCAGTCTAAGCTCGGACCAGACCGAGGGTTGCGGCATCACATGCTAGGCTGGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
14063330 GTGCTGGTGTCACATTTTT-TTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
14063394 GCAGCATTAGGGTTTCGGTGATCGGGGGGCCGGGGGGGTGCGCGCACATGATGTGTGATGGGTGC
196 GCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
14063459 TGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
261 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
14063524 AGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTGGCCATTAAAGTGTCTGAAATGGGGACACTT
326 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
14063589 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
391 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
**
14063654 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTACCGAAAAAATTTTAAAAA
456 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-CCGAAAAAATTTTAAAAA
* * *** * * * ** *
14063719 ATCCCAAACTAAAAAAAGTTACAAAAATCATGAAAAATAGAAAACGGGTCATCTCGCCATGAAAC
520 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAAC
* * * * *
14063784 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGCA
585 TTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
* *
14063849 GAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
650 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * *
14063914 CTCGGGCTAGCGTAGTGCCCGCCTGCCCGCCCGTCTGCTCGTTTCATCGGTTCGCTTAGGCATAC
715 CTCTGGCCGGCGTA------G--TGCCCGCCCG-CT--T-GTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
14063979 AGAGTTCATTCCCAGTCTAAGGTCAGACTGGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGC
768 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
* * * * * *
14064044 AGAGGGGGTCCCAGCCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCG
833 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * * * *
14064102 CCTGCACGCTTGTTTTGTAGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACCGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
14064167 GTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGGCACCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * *
14064232 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGCGAACCTGACCG
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* ** *
14064297 GCGGCATTGGGGTTCCGGTGATCGGGGGTGTTGGGGGGGTGTGCTCACATGATGTGCGATGGGTG
196 GCGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
14064362 CTGGTACATGGCCCTAATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
14064427 AAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCCT
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * ** *
14064492 TTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTGTTTACGCATACCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** *
14064557 ACAAAAATACAACGATCACATCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAA
* * * * * *
14064622 AATTTTGAACCGTAAAAAGTTTTC-AAAATCATGAAATATAGAAAACGAGTCGTCTTGCTATGAA
519 AATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
* * *
14064686 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
583 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
14064751 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAGCCGGT
648 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
14064816 CTCTCTCGTCGGCGTAGTGCTCGCTCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGTTTGGGCAT
713 CTCTCTGGCCGGCGTA------G-T-----GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
*
14064881 ACGGAGTTCATTCCCAGTCTAAAATC-GA----ACC----------G--GC---A---GCA-CA-
766 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* *
14064921 -CAGAGGGGGACCCAG-CTGATCCCCGGCTTGCGCA-CCTTGCCCCTCTGGCCGGCTGAGCA
831 GCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCA
* ** * * **
14064980 CCCGTACGCTCGTTTTATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTGTAAGCATTTGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
14065045 GTTCATTCCCAGTCTAAGATCGGACCGGTCCGAGGGTTGCTGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
14065110 GTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * *
14065175 GCGGCATTGGGGTTTCGACGATCGGGGGGGCTGGGCGGGCTGTGCGCACATGATGTGCGATGGGT
196 GCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* *
14065240 GCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * *
14065305 CAAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTATCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
14065370 TTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** * *
14065435 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAACT-CT-TGAAAAAATTTAAAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCGAAAAAATTTTAAAA
* * * *
14065498 AATC-CTGAATCGCAAAATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
519 AATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
*
14065562 ACTTCACATGAAGGCTTGAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
583 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
14065627 TAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
648 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
14065692 CTCTCTTGCCGGCGTAGTGACCACCCGTCCGCCCGCCCGCTCGTTTCATCGGTTGGTTTATGCAT
713 CTCTCTGGCCGGC---GT----A---GT--GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
14065757 ACGGAGTTCATTCCCAGTCTAATATCA-AACTGAGCTGAGGGTTGTGGCAGCAGGATCGACAGCA
766 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * ** * *
14065821 CGCAGAGGGGGACCCAGTCGATCCCCGGCTTACGCATCTTGTCCCTCTGGTCGGCTGAGCA
830 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * * * *
14065882 CCCGTACGCTCGTTTCATGGGGTGACTTTGGCATACGGAGTTCATTCCCAATCTAAGCATCCAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
14065947 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGACAGCACATGCTGGGCTTGAGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * * *
14066012 GTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGATAACCTGACTG
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * **
14066077 GCGGTATTGGGGTTCCGACGATCGGGGGGGGCC-GGGGGGTGTGAACACATGATGTGCGATGGGT
196 GCGGCATTGGGGTTCCGGCGATC--GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* ** *
14066141 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCATGCCCCTTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
14066206 AAAGAGCATATGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
14066271 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCAGAATTTTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * *
14066336 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAACT-CT-TGAAAAAATTTAAAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCGAAAAAATTTTAAAA
* * * * *
14066399 AATC-CTGAATCGCAAAATGTTTCGAAAATCGTGAAAAATAGAAAACAAGTGGTCTTGCCATGAA
519 AATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
14066463 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
583 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
** * *
14066528 TAGAAATATGAAGAAATGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCATCCCGT
648 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
14066593 CTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTT
713 CTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCT-------T-GTTTCGTCGGTTGGCTTAGGCAT
* * * ***
14066658 ACGGAGTTCATTCCCAGTCTATGAAT-AGACCGAACTGAGGGTTGTGGCAGCAGGATAATCAGCA
766 ACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
** * * * * * *
14066722 CGCAGAGGGGGACCCGACCGATCCCCGACTTGCGAATCCCGCCCCTCTAGCTGACTAAGCA
830 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
14066783 CCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--TGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
14066845 ----A----C---C----A----A----ACCGAGGGTTACGGCAGTACATGCAGGACTCAGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * ** * * *
14066887 ATGTTGGTGTTGCATTTTTCTTC-TCCGGGGCACCATCGTCGGAGCATCG-CAAGAGAACCTGAC
131 GTGCTGGTGCCGCATTTTTCTTCAT-CAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGAC
* * * *
14066950 CGGCGGCATTGGGGTTCTGGTGATCGAGGGGGCCGGGGGGTGTGTGCGCACGTGATGTACGATGG
194 CGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGG
* * * *
14067015 GTGCTAGTACCTGGCCCTTACATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA-CCCC
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
14067079 TTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
322 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
14067144 ATTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGACTTTTTTTTTGCATG
387 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
14067209 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAAAAATTTTA
452 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTT-
**
14067274 AAAAAATCTCGAACAAT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCAT
515 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCAT
*
14067338 GAAACTTCACATGAAGGCTTGAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
580 GAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
14067403 ACGTAAAAATATGAGGTTGTGCCTAAACGCACCTACCACCCTATCGATCCACGGTTTGTGCATCC
645 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
14067468 CGTCTCTCTGGCCGGCGTAGTCCCTGCCCGCCAGCCTGCCCGCCCGCTCGTTTTGTCGATTGGCT
710 CGTCTCTCTGGCCGGC---G----T-------AG--TGCCCGCCCGCTTGTTTCGTCGGTTGGCT
* * * *
14067533 TAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGACAGCAGGATCG
759 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * *
14067598 ACAGCAAGCAAAGGGAGACCCGGTCGATCCCCGGCTTGCGAATCCCGCCCCTCTGGCCGACTGAG
824 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
14067663 CA
889 CA
* *
14067665 CCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG-AT-C-G-
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
14067726 G---------A-TC--AGAT----------CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
14067769 GTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCACCGGATCATCG-CTGGAGAACCTAACC
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACC
* * * *
14067833 GGTGGCATTGGGGTTCCAGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGC
195 GGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
14067898 ACTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
259 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
14067963 CAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
324 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
14068028 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
389 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *** *
14068093 AACAAAAATACAAGGGTCACGTC-ACCAAGTTTTTTGCCAAAACTCCATCCAAAAAAATTTTAAA
454 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAA
14068157 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
518 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAA
*
14068222 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
583 ACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
14068287 TAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATTCACGGCTTGCGCATCCTGT
648 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
14068352 CTCTTTGGTCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCTTATGGAGTTGATT
713 CTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
14068417 CCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGAC
778 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * *
14068482 CCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTAGTCAGCTGAGCA
843 CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
14068530 TCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
14068595 GTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGCAGATGCTGCGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*** * * * *
14068660 GTGCTGGTGCCGTGGTTTTCTTTATCAGGGCACCATCACCGGATCATCGTCGGAGAACCTAACCG
131 GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
14068725 GTGGCATTGGGGTTCCAGCAATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTGTGATGGGCGC
196 GCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
14068789 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCA
261 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
14068854 AGAGTATTT-ATGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
326 AGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
14068918 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * *
14068983 ACAAAAATACAAGGGTCACGTC-ACCAAGTTTGTTGCCAAAACTCCATCCAAAAAAATTTTTAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAA
14069047 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAA
519 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAA
* *
14069112 CTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCACAT
584 CTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * * **
14069177 AGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATTCACGGATTGCGCATCATGTC
649 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *** * * * *
14069242 TCTTTGGTCGGCGTAGTGCCCGCCCGCACATTTCGTCTGTTGGCTTAGGCTTATGGAGTTGATTC
714 TCTCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
14069307 CCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGGGACC
779 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * *
14069372 CGGTCGAACCCCGGCTTGCGCATCCCACCCCTCTAGTCGGCTGAGCA
844 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
14069419 CCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
14069483 TTTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTC-GGCA
66 -GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** * *
14069547 TGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACGATCACCGGATCATCACCGGAGAACCTAACT
130 TGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * *
14069612 GGTGGAATTGGGGTTCCAGCGAT--------C---GGGG-G-G-GC-C-----G-G-G--GGGTG
195 GGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
14069653 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTTACACCCCGTTA
260 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
14069718 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATT
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
14069783 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
14069848 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAA-TTTAAAA
455 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAATTTTAAAA
* * * **
14069912 ATATCCCGAACCGCAAAAA-TATTCAAAAATCGTGAAAAATAGAAAACCAGTCATCTTGCCATGA
519 A-ATCTCGAACCGTAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGA
* * *
14069976 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAG
582 AACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
14070041 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCG
647 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
14070106 TTTCTCTGGCCGGCTTAGTGCCCGCCCGCCCGTCCGCTCGTTTCG-CCGTTGGCTTAGGCATACG
712 TCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-T----T-GTTTCGTCGGTTGGCTTAGGCATACG
* * * *** * *
14070170 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGATTGCAACAGTAGGATCGGCAGCACGTA
769 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
* * *
14070235 GAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCA
834 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * *
14070292 CCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * *
14070357 GTTCATTCCCAGTATAAGATCAAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCAC--G-AT
66 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
14070419 GATACATTGGTACCGCATTTTT-TTC-GCCGGG-------G-C--ACCATCGTCGGAGAACCTAA
131 G-TGC--TGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * *
14070472 CCGGCAGCATTGGGGATCTGGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGG
193 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGG
* *
14070537 GTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCC
257 GTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
14070602 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGA
321 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
14070667 CACTTTATTCAATTGGCCACATAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
14070732 GCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
451 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAA
14070791 TAGAAAACGA
Statistics
Matches: 5903, Mismatches: 611, Indels: 365
0.86 0.09 0.05
Matches are distributed among these distances:
862 35 0.01
864 1 0.00
865 405 0.07
866 229 0.04
867 4 0.00
868 3 0.00
869 2 0.00
870 1 0.00
871 3 0.00
872 7 0.00
873 233 0.04
874 34 0.01
875 278 0.05
876 329 0.06
877 8 0.00
878 442 0.07
879 267 0.05
880 23 0.00
881 298 0.05
882 437 0.07
883 5 0.00
884 3 0.00
885 2 0.00
887 81 0.01
888 245 0.04
889 755 0.13
890 11 0.00
891 120 0.02
892 6 0.00
893 5 0.00
894 8 0.00
896 1 0.00
898 4 0.00
899 5 0.00
900 4 0.00
901 629 0.11
902 382 0.06
903 81 0.01
904 501 0.08
905 5 0.00
907 2 0.00
908 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (890 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCGAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACT
TCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
Found at i:14070351 original size:26 final size:26
Alignment explanation
Indices: 14070322--14070374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14070312 GTTGACTTAG
*
14070322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
14070348 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
14070374 G
1 G
14070375 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:14072561 original size:26 final size:26
Alignment explanation
Indices: 14072522--14072577 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14072512 TAGGATGACT
14072522 TAAGCGTACAGAGTTCATTCCCAGTC
1 TAAGCGTACAGAGTTCATTCCCAGTC
* *
14072548 TAAGCTTACGGAGTTCATTCCCAGTC
1 TAAGCGTACAGAGTTCATTCCCAGTC
14072574 TAAG
1 TAAG
14072578 ATCAAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCGTACAGAGTTCATTCCCAGTC
Found at i:14072725 original size:901 final size:896
Alignment explanation
Indices: 14070951--14075823 Score: 6112
Period size: 901 Copynumber: 5.5 Consensus size: 896
14070941 TCAGTTCACT
* *
14070951 CTGGTACTTGGTCCTTATATT--CTCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTT
1 CTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
14071014 AAAGGGCATTTGAGATTTAACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACAC
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
14071079 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
130 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
14071144 AACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAA
195 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * * * * *
14071209 AAATCTCGAACAGCAAAAAGTTTCGAAAATCGTAAAAAATAGAAAACGAGTCATCATGCCATCAA
260 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
14071274 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACA
325 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
14071339 CAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
390 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * * * * *
14071403 CTTTCTAGCCGGCGTAGTGCCCGCCCGTCCGCCTGTCCGCTCGTTTCGTCGATTAGCTTAGGCAT
455 CTCTCTGGCCGGCGTAGTGACCGCCCG-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
** * * ** *
14071468 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTTCGATAGCAGGATCGGCAGCAC
519 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCAC
* * * * * *
14071533 GTAGAGGGGGACCCGACCGATCCCCGACTTGTACATCCCGCCCCTATGG-TCGGCTGAGCGCCCA
584 GTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCT-GGCTGAGCACCCG
* * *
14071597 CACACTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
648 CACGCTCGTTTTAT-GG-TGACTTA-GCGTAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
14071662 ATTCCCAGTCTAAGATCACACTGGACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATTTGC
709 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGT
* * ** *
14071727 TGGTGCCGCATTTTTCTTCATCGGGGCACCAT-GTC-GAAGATTCACCGGAGAACCTGACTGGCG
774 TGGTGCTGCATTTTTCTTCCTC-GGGCACCATCGTCGGACCA-TCACCGGAGAACCTGACCGGCG
* * * * * * *
14071790 ACATTGAGGTTCCGATGATCGCGGGCGACGGGGGGTGTTCGTACATGATGTGCGATGGGTG
837 GCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
14071851 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
14071916 AAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
14071981 TTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGTTGAATTTTTTTGTGCTTGCCA
131 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
14072046 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAACACTCCTTCCAAAAAAATTTCAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
*
14072111 AATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
261 AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
14072176 CTTCACGCGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
326 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
14072241 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGATTTGCGCATCCCGTC
391 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * *
14072306 TCTCTGGCCGGCATAGTGACCGCCCGACCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
456 TCTCTGGCCGGCGTAGTGACCGCCCG-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
** * * *** * * *
14072371 TAGAGTTCATTCTCAGTCTAAGATGAGACCAGACCGAATTTTATGGCAGCAGGATCAGTAGCACG
520 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACG
* * ** * *
14072436 CAGACGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGACCGCCCGCA
585 TAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCA
*
14072501 CGCTCGTTTTATAGGATGACTTAAGCGTACAGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCAT
650 CGCTCGTTTTAT-GG-TGACTT-AGCGTAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
14072566 TCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTG
711 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * *
14072631 GTGCTGCATTTTTTTTCGCTAGGGCACCATCGTCGGACCATCATCGGACAACCTGATCGG-GGCA
776 GTGCTGCATTTTTCTTC-CTCGGGCACCATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCA
* * *
14072695 TTGGGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCAAATGATGTGCGATGGGTG
840 TTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
14072753 CTGGTACTTGGCCCTTATATTTGTCCCCTATCCCTCA-CAAGCCTCGAGAACTCATACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
14072817 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
14072882 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTATGTGCAAGCCA
131 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** *** *
14072947 AAAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCCTTTTGAAAAAATTTTAAAC
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * * * *
14073012 AATCTCGAACCGTAAAAAGTTTCAAAAATCACGAAAAATATAAAATGAGTCGTTTTGCCATGAAA
261 AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
14073077 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
326 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
14073142 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
391 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * * *
14073207 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCAGCTCGCTCATTTCGTCAGTTGGCTTAGGCATA
456 TCTCTGGCCGGCGTAGTGACCGCCCG-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* * * * *
14073272 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATTGGCAGCACA
520 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACG
* * * * * *
14073337 TAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCTTGCCCCTTTAGCTGGCTGAGCACCCGTA
585 TAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCA
* * * * *
14073402 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCAT
650 CGCTCGTTTTAT-GG-TGACTTA-GCGTAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
14073467 TCCCAGTCTAAGCTCAGATCGGACCGAGCGTTGC-AGCAGCACATGCTGGGCTCGAGCATGTATT
711 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGTT
*
14073531 GGTGCCGCATTTTTC-T--TC--G-----T--T--G---------GG-GAACCTGACCGGCGGCA
775 GGTGCTGCATTTTTCTTCCTCGGGCACCATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCA
* **
14073572 TTGGGGTTCCGGCGATCGGGGGGGTTGGGGGGGAGTGTGCGCACATGATGTGCGATGGGTG
840 TTGGGGTTCCGACGATC-GGGGGG--CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
*
14073633 CTGGTACTTGGCCCTTATA-TGGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTT
1 CTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
14073697 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
**
14073762 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCCCATGCC
130 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * *
14073827 AACAAAAATACAAGGATCACGTCTGCGAAGTTTACGACCAAAACTCCTTTCAAAAAAATTTTAAA
195 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * *
14073892 AAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAA
260 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
14073957 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATG
325 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
14074022 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGT
390 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * *
14074087 CTCTCTGGCCGGTGTAGT----G--C-CCGCCCGCCCGCTCATTTCATCGGTCGACTTAGGCATA
455 CTCTCTGGCCGGCGTAGTGACCGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* * * * *
14074145 CAGAGTTCATTCCTAATCTTAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGAAAGCACG
520 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACG
* * * * * * *
14074210 TAGAGGAGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCCGGCCGGTTGAGCACCCGTA
585 TAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCA
* * *
14074275 CG--C----T-T-GT---TT--CGT--GGGTTGA----C--T-TAGGCATACGGAGTTCATTCCC
650 CGCTCGTTTTATGGTGACTTAGCGTACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** * * *
14074318 AGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATACTGGGCTCGGGCATGTGTTGGTGC
715 AGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
* * * * *
14074383 TGCATTTTTCTTCGTCGGG-------G-C--ACCATCATCGAAGAACCTGACCGACGACATTGGG
780 TGCATTTTTCTTCCTCGGGCACCATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCATTGGG
* * * *
14074438 GTTCC-AGTGATTGGGGGGGCCGGTGGGATGTGCACACATGATGTGCGATGGGTG
845 GTTCCGA-CGA-TCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* *
14074492 CTGGTACTTGGCCCTTATATTGGCCCCATATCCCTTATCAAACCTCGAGAACTCACACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
14074557 AAAAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
14074622 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCA
131 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* **
14074687 ACAAAAATACAAGGATCACGTCTACCAACTTTGCAGCCAAAACTCCTTTCC-AAAAAATTTTAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAA
* * *
14074751 AAATCTCGAACCGTAAAAACTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAA
260 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* ** *
14074816 ACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACA
325 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
14074881 TAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGCATTCCGT
390 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * *
14074946 CTCTTTGGCCGACGTAGTG-CCTGCCTGCCTGCCCTCCCGCTCATTTCATCGGTTGGCTTAGGCA
455 CTCTCTGGCCGGCGTAGTGACC-GCCCGCC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
* * * * **
14075010 TAGGGAGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGAAGCA
518 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCA
* * *
14075075 CGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCAT-CTCGCCCCTCCGGCCGGCTGAGCACCC
583 CGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCT-GCCCCTCTGGCTGGCTGAGCACCC
*
14075139 GCACGCTCGTTTCATGG-G---T----T--GA---C-TT---AG-----GCATACGGAGTTCATT
647 GCACGCTCGTTTTATGGTGACTTAGCGTACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
14075182 CCCAGTCTAAAATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
712 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGG
* * * *
14075247 TGCTGTATTTTTCTTCAC-CGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGAACGGCGGCA
777 TGCTGCATTTTTCTTC-CTCG-GGCACCATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCA
*
14075311 TTGGGGTTCCAACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTG
840 TTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* *
14075370 CTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGTGAACTCACACCCCCTTA
1 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
14075435 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTGTTTGAAATGGGGACAGT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
14075500 TTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
131 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
14075565 AAAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACACCTTCGAAAAAAATTTTAAAA
196 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * ** *
14075630 AATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTATTGCCATGAAA
261 AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * ** *
14075695 CTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAATTCATAAAAATGGCATTGGCACGT
326 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
14075760 AGAAATATAAAGAGGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCATCCCGT
391 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
14075824 GGGAGTTCAT
Statistics
Matches: 3487, Mismatches: 409, Indels: 176
0.86 0.10 0.04
Matches are distributed among these distances:
847 83 0.02
848 2 0.00
850 2 0.00
852 1 0.00
854 5 0.00
857 2 0.00
859 453 0.13
860 12 0.00
861 33 0.01
862 1 0.00
863 2 0.00
864 1 0.00
866 4 0.00
867 245 0.07
868 2 0.00
869 1 0.00
871 1 0.00
872 2 0.00
873 142 0.04
874 2 0.00
875 3 0.00
876 11 0.00
877 26 0.01
878 488 0.14
879 10 0.00
880 58 0.02
881 403 0.12
886 1 0.00
888 1 0.00
890 1 0.00
895 1 0.00
897 1 0.00
900 23 0.01
901 1021 0.29
902 418 0.12
903 22 0.01
904 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (896 bp):
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGACCGCCCGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGAAGCACGT
AGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCAC
GCTCGTTTTATGGTGACTTAGCGTACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCT
GCATTTTTCTTCCTCGGGCACCATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
Found at i:14073456 original size:26 final size:26
Alignment explanation
Indices: 14073426--14073479 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14073416 GTTGACTTAG
* *
14073426 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14073452 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14073478 GC
1 GC
14073480 TCAGATCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14075622 original size:878 final size:863
Alignment explanation
Indices: 14072554--14075819 Score: 4302
Period size: 878 Copynumber: 3.7 Consensus size: 863
14072544 AGTCTAAGCT
** * *
14072554 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
14072619 GGGCAAGTGCTGGTGCTGCATTTTTTTTCGCTAGGGCACCATCGTCGGACCATCATCGGACAACC
66 GGGCATGTGTTGGTGCTGCATTTTTCTTC-C----G----A--G--GCACCATCATCGGAGAACC
* * * * *
14072684 TGATCGG-GGCATTGGGGTTTCGACGATC-GGGGGGTCGGGGGGGTGTGCGCAAATGATGTGCGA
118 TGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * * *
14072747 TGGGTGCTGGTACTTGGCCCTTATATTTGTCCCCTATCCCTCA-CAAGCCTCGAGAACTCATACC
183 TGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACC
14072811 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
14072876 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTATGTGC
313 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
14072941 AAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCCTTTTGAAAAAATT
378 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTACGGCCAAAACTCCTTTCAAAAAAATT
* * * * * * *
14073006 TTAAACAATCTCGAACCGTAAAAAGTTTCAAAAATCACGAAAAATATAAAATGAGTCGTTTTGCC
443 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
14073071 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
508 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
14073136 GCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
573 GCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * * *
14073199 ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCAGCTCGCTCATTTCGTCAGTTGGCT
636 ATCTCGTCTCTCTGGCCGACGTAGTGCCTG-CCG-CCGCCCGCCCGCTCATTTCATCGGTTGGCT
* * * *
14073264 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATTG
699 TAGGCATACGGAGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *** *
14073329 GCAGCACATAGAGGGGGACCCGACCGATCCCCGGATTGCGCATCTTGCCCCTTTAGCTGGCTGAG
764 GAAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCCGGCCGGCTGAG
*
14073394 CACCCGTACGCTCATTTCATGGGTTGACTTAGGCA
829 CACCCGTACGCTCGTTTCATGGGTTGACTTAGGCA
*
14073429 TACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCTCAGATCGGACCGA
1 TACGGAGTTCATTCCCAGTCTAAG-AT-C---G----------G----A---C----CGGACCGA
* * * * *
14073494 GCGTTGCAGCAGCACATGCTGGGCTCGAGCATGTATTGGTGCCGCATTTTTCTT-C---G-----
40 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCCGAGGCACCA
* ** **
14073550 T--T-GGGGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTTGGGGGGGAGTGTGC
105 TCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGG-CCGGGGGG-GTGTGC
14073612 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TGGACCCCCTATCCCTCATCAAAC
168 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGA-CCCCTATCCCTCATCAAAC
* *
14073676 CTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
232 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
14073741 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
297 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * * * *
14073806 CTGAATTTTTTTGCCCATGCCAACAAAAATACAAGGATCACGTCTGCGAAGTTTACGACCAAAAC
362 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTACGGCCAAAAC
*
14073871 TCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAA
427 TCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
14073936 AACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
492 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ***
14074001 AATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
557 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
14074066 TCCACGGCTTGTGCATCTCGTCTCTCTGGCCG--GT-GTAG--TG-C-CCGCCCGCCCGCTCATT
622 TCCACGACTTGCGCATCTCGTCTCTCTGGCCGACGTAGT-GCCTGCCGCCGCCCGCCCGCTCATT
* * * * *
14074124 TCATCGGTCGACTTAGGCATACAGAGTTCATTCCTAATCTTAGATCAGACCAGACCGAGGGTTAC
686 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTGC
* * *
14074189 GGCAGCAGGATCGAAAGCACGTAGAGGAGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCT
751 GGCAGCAGGATCGGAAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCT
* * *
14074254 CCGGCCGGTTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCA
816 CCGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
14074302 TACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATACTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
14074367 GGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGAAGAACCTGACCGACGAC
66 GGGCATGTGTTGGTGCTGCATTTTTCTTC--CGAGGCACCATCATCGGAGAACCTGACCGGCGGC
** * * * *
14074432 ATTGGGGTTCCAGTGATTGGGGGGGCCGGTGGGATGTGCACACATGATGTGCGATGGGTGCTGGT
129 ATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
14074497 ACTTGGCCCTTATATTGG-CCCCATATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAAA
194 ACTTGGCCCTTATATTGGACCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
14074561 GCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTT
258 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
14074626 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAACAA
323 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
14074691 AAATACAAGGATCACGTCTACCAACTTTGCAGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATC
388 AAATACAAGGATCACGTCTACCAAGTTTACGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC
* * * *
14074756 TCGAACCGTAAAAACTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTC
453 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
14074821 ACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACATAGAA
518 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
*
14074886 ATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCGCAT-TCCGTCTCT
583 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCT-CGTCTCT
* * *
14074950 TTGGCCGACGTAGTGCCTGCCTGCCTGCCCTCCCGCTCATTTCATCGGTTGGCTTAGGCATAGGG
647 CTGGCCGACGTAGTGCCTGCC-GCC-GCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGG
**
14075015 AGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGAAGCACGTAG
710 AGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGTAG
*
14075080 AGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCCGGCCGGCTGAGCACCCGCACGC
775 AGGGGGACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCCGGCCGGCTGAGCACCCGTACGC
14075145 TCGTTTCATGGGTTGACTTAGGCA
840 TCGTTTCATGGGTTGACTTAGGCA
* *
14075169 TACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
14075234 GGGCATGTGTTGGTGCTGTATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCACCGGAGAACC
66 GGGCATGTGTTGGTGCTGCATTTTTCTT--CCGAGGCACCAT--------CAT---CGGAGAACC
* *
14075299 TGAACGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGA
118 TGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
*
14075364 TGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGTGAACTCACACC
183 TGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
14075429 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTGTTTGAAATGGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
14075494 GACAGTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATTTTTTTTGTGC
313 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** *
14075559 ATGCCAAAAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACACC-TTCGAAAAAAAT
378 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTACGGCCAAAACTCCTTTC-AAAAAAAT
* ** *
14075623 TTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTATTGC
442 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * **
14075688 CATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAATTCATAAAAATGGCATT
507 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
14075753 GGCACGTAGAAATATAAAGAGGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCA
572 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
14075818 TC
637 TC
14075820 CCGTGGGAGT
Statistics
Matches: 2105, Mismatches: 209, Indels: 150
0.85 0.08 0.06
Matches are distributed among these distances:
847 55 0.03
850 1 0.00
851 1 0.00
853 1 0.00
854 1 0.00
858 7 0.00
859 446 0.21
860 9 0.00
861 40 0.02
862 2 0.00
863 2 0.00
864 1 0.00
866 2 0.00
867 274 0.13
868 1 0.00
869 1 0.00
872 2 0.00
873 187 0.09
875 27 0.01
876 14 0.01
877 25 0.01
878 480 0.23
879 17 0.01
880 59 0.03
881 394 0.19
884 1 0.00
894 1 0.00
897 1 0.00
899 1 0.00
901 52 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (863 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGTTGGTGCTGCATTTTTCTTCCGAGGCACCATCATCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACGTCTACCAAGTTTACGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGG
CCGACGTAGTGCCTGCCGCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAATCTTAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGTAGAGGGGG
ACCCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCCGGCCGGCTGAGCACCCGTACGCTCGTTT
CATGGGTTGACTTAGGCA
Found at i:14077771 original size:26 final size:26
Alignment explanation
Indices: 14077742--14077794 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14077732 GTTTACTTAG
14077742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14077768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14077794 G
1 G
14077795 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14078681 original size:26 final size:26
Alignment explanation
Indices: 14078644--14078696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14078634 GTTGACTTAG
* *
14078644 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14078670 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14078696 G
1 G
14078697 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14079124 original size:899 final size:897
Alignment explanation
Indices: 14075977--14079439 Score: 4926
Period size: 897 Copynumber: 3.9 Consensus size: 897
14075967 GTTAACTTAG
* * ** * **
14075977 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTCCGTTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
14076042 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGCGGCACCATCACCGGAGCATCGCCGGAGA
* *
14076107 ACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGCCGAGGGGTGTGTGCGCATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCG-GGGGTGTGCGCACATGATGTGC
* * * *
14076171 GATGGGGGCTGTTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
14076236 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
14076301 GGGACAC-TTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AACTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
14076364 GCATAACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAT
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCAAAAAAAT
* * * *
14076429 TTTAAAAAATCCCAAAGCGCAAAAAGTTTCAAAAATCTTG-AAAATAAAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
14076493 CATGAAGCTTCACGTGAAAGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
14076558 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCTTGCACG
584 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
14076623 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCTACTCATTTCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGGCGTAATG-CCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTT
* * *
14076688 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACC-GAACTGAGGGTTGTGGCAGTAGGATCG
713 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAG-ACTGAGGGTTGAGGCAGCAGGTTC-
* * * * *
14076752 GCAGCATGTAGAAGGGGACCCGGCCGATCCTCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGA-
776 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
*
14076816 T-CACCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TAC-CCGCACGCTCGTTTCGTA-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14076874 GCATACGAAGTTCATTCCCAGTCCAAAATCGAACCAGACCGAGGGTCGCGGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
14076939 CTCGGGCATGTGTTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGCGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
14077004 ACCTGACCGATGGCTTTGGGGTTCCGATGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCG
14077069 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
14077134 CCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* ***
14077199 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCCA
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
14077264 CATGCCAAAAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTC-AAAAAAAT
* *
14077329 TTAAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
** *
14077394 CATGAAACTTCACGTGAAGGCTTAAGGGACC-ATCGTATGAATTTACAATTCGTAAAAATGGCAT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCAAT-GTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
14077458 TGGCACATAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATTCACGGCTTGCGC
583 TGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
14077523 ATCCCGTCTCTCTGGTCGGCGT-A----G--TGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
648 ATCCCGTCTCTCTGGCCGGCGTAATGCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTT
* * * *
14077581 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCA-GTAGCAGGATTG
713 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACTGAGGGTTG-AGGCAGCAGG-TTC
* * * * * *
14077645 GCAGCACGCAGCGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGCTGAG
776 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * *
14077710 CACCCGCATGCTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TACCCGCACGCTCGTTTCGT-AGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14077768 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGGCAGCACATGCTAG
* * * * *
14077832 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCCTCGCCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGCGGCACCATCACCGGAGCATCGCCGGAG
* ** * * *
14077897 AACCTGACCGACGGCATTGAGGTTTTGACGATTGGGGGGGCTGGGGGTGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGC-CGGGG-GTGTGCGCACATGATGT
14077962 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14078027 CACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14078092 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAAGTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * *
14078157 TGTGCATGTCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGTCCAAAACGCCTTCCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTT-CAAAA
* * * * *
14078222 AAATTTTAAAAAATCCCGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
450 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
14078287 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAA-GG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGG
* *
14078351 CCATTGGCATGCAAAAATATG-AGATGTGCCTAAACCCAGCTACCACCCTATCTG-TCCACGGCT
580 -CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGGCT
* * * * *
14078414 TGCGCATCCCGTCTCTCTGGCTGGTGTAATGCACGCCCACCCGCCCGCCCGCTCGTTTCGTCGGT
643 TGCGCATCCCGTCTCTCTGGCCGGCGTAATGC-CGCCCGCCCGCCCGCCCACTCATTTCGTCGGT
* * *
14078479 TGGCTTACGCATACGGAGTTCATTCGC-AGTCTAAGATTAGACCAGATTGAGGGATGAGGCAGCA
707 TGGCTTAGGCATACGGAGTTCATTC-CTAGTCTAAGATTAGACCAGACTGAGGGTTGAGGCAGCA
* * *
14078543 GGTTCGAAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GCTGG
771 GGTTCGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
14078607 CTGAGTACCCGCACGCTCGTTTCGTCAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 CTGAGTACCCGCACGCTCGTTTCGT-AGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14078670 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTACGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* ** * * *
14078735 CTCGGGCATGTGTTGGTGTCACATTTTTCTTCGCTACGGCACCATTACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGCGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
14078800 ACCTGACCGGCGACGTTAGGGTTCCGACGATCGGGGGGTCGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
*
14078865 TGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
14078930 CCCTTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGG
261 CCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
14078995 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
14079060 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTTCAAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-GCCTTCAAAAAAAT
**
14079125 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
14079190 CATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
14079254 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCA
584 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
14079319 TCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGTCC-TTCATTTCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGGCGTAATGCC-GCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTT
* ** *
14079383 AGGCATACGGAGTTCAATCCTAGTCTAAGATCGGACC-GACCGAGGGTTGCA-GCAGCA
713 AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACTGAGGGTTG-AGGCAGCA
14079440 CATGCTGGGC
Statistics
Matches: 2279, Mismatches: 246, Indels: 82
0.87 0.09 0.03
Matches are distributed among these distances:
893 136 0.06
894 191 0.08
895 13 0.01
896 259 0.11
897 508 0.22
898 143 0.06
899 377 0.17
900 160 0.07
901 164 0.07
902 195 0.09
903 50 0.02
904 82 0.04
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGCGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCAAAAAAATTT
TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAATGCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACTGAGGGTTGAGGCAGCAGGTTCGCAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTACCC
GCACGCTCGTTTCGTAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14080307 original size:704 final size:700
Alignment explanation
Indices: 14078670--14080835 Score: 3263
Period size: 704 Copynumber: 3.1 Consensus size: 700
14078660 CCTAGTCTAA
* * * * * * * *
14078670 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTAC-GACAGCACATGCTAG
1 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCACATGCTGG
* * * ***
14078734 GCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGCTACGGCACCATTACCGGAGCATCACCGAAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCA-T--C---GC--CA--G-AG
* * * * * *
14078799 AACCTGACCGGC-GACGTTAGGGTTCCGACGATCGGGGGG-TCGGGGGTGTGCGCACATGATGTG
119 AACCTAACCGGCAG-CATTGGGGTTCCGGCTATCGGGGGGCTGGGGGGTGTGCGCACATGATGTG
*
14078862 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
14078927 ACCCCCTTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
247 ACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
14078992 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTT
*
14079057 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTTCAAAAA
376 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAA
14079122 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
441 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
14079187 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCA
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCA
14079252 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCG
571 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCG
* * * *
14079317 CATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGTCCTTCATTTCGTCGGTTGGCT
636 CATCCTGTCTCTTTGGCCGGCATAGTGCCTG-CC-CCCACCCG-CCCTCATTTCGTCGGTTGGCT
14079382 TAG
698 TAG
*
14079385 GCATACGGAGTTCAATCCTAGTCTAAGATCGGACC-GACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
14079449 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGAACCTAACCGGC
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGAACCTAACCGGC
* *
14079514 GGCATTGGGGTTCCGGCTAACGGGGCGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 AGCATTGGGGTTCCGGCTATCGGGG-GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
14079578 GTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAAA
195 GTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAAA
14079643 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
14079708 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTCAGCTGAATTTTTCTATGCATGCCAAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-AGCTGAATTTTTTTATGCATGCCAAC
*
14079773 AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCAAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAAA
*
14079838 TCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
453 TCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
14079903 TCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
518 TCACGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
*
14079968 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCTGTCTCT
583 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCTGTCTCT
14080033 TTGGCCGGCATAGTGCCTGCACACCCACCCGCCGCTCATTTCGTCGGTTGGCTTAG
648 TTGGCCGGCATAGTGCCTGC-C-CCCACCCGCC-CTCATTTCGTCGGTTGGCTTAG
14080089 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
14080154 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACTATCGCCAGAGAACCTAACCGGC
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGAACCTAACCGGC
*
14080219 AGCATTGGGGTTCCGGCTATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGG
131 AGCATTGGGGTTCCGGCTATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
14080284 TACTTGGCCTTCTATTGGCCCCCTATCCCTCATCAAGCCGTGAGAACTCAAACCCCC-TTAAAGA
196 TACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAAAGA
* *
14080348 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
261 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
14080413 TCAAATGGTCA-AAAATCTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTGTCCATGCCAACAA
326 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TAGCTGAATTTTTTTATGCATGCCAACAA
* * *
14080477 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTTAAAAAAT-
390 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAAATC
* **
14080541 CTCGAACCG-CAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-AGAACT
455 CT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACT
* * *
14080604 TCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCACATAG
518 TCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * * *
14080669 AAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCTGTCTC
** * *
14080734 TTTGGCCGGCATAGTGCC--CGGCCA------CTCGTTTCATCGGTTGG-TTGAG
647 TTTGGCCGGCATAGTGCCTGCCCCCACCCGCCCTCATTTCGTCGGTTGGCTT-AG
* * * *
14080780 GCATACGAAGTTCAATCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCA
14080836 GGATCAGAAA
Statistics
Matches: 1354, Mismatches: 82, Indels: 54
0.91 0.06 0.04
Matches are distributed among these distances:
690 2 0.00
691 69 0.05
698 3 0.00
700 2 0.00
701 69 0.05
702 231 0.17
703 120 0.09
704 602 0.44
705 155 0.11
706 1 0.00
708 1 0.00
711 1 0.00
713 1 0.00
714 64 0.05
715 33 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (700 bp):
GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGAACCTAACCGGC
AGCATTGGGGTTCCGGCTATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTTAAAAAATCC
TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCTGTCTCTTTG
GCCGGCATAGTGCCTGCCCCCACCCGCCCTCATTTCGTCGGTTGGCTTAG
Found at i:14080975 original size:26 final size:26
Alignment explanation
Indices: 14080939--14080989 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14080929 GTTCACTTAG
* *
14080939 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
14080965 GCATAGGGAGTTCATTCCCAGTCTA
1 GCATAGGGAGTTCATTCCCAGTCTA
14080990 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:14084997 original size:12 final size:12
Alignment explanation
Indices: 14084978--14085008 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14084968 TCGGCGTAGT
14084978 GCCCGCCCACCC
1 GCCCGCCCACCC
*
14084990 GTCCGCCCACCC
1 GCCCGCCCACCC
14085002 GCCCGCC
1 GCCCGCC
14085009 TGCTCGTGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.71, G:0.19, T:0.03
Consensus pattern (12 bp):
GCCCGCCCACCC
Found at i:14085228 original size:26 final size:26
Alignment explanation
Indices: 14085192--14085241 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14085182 GTTGACTTAG
14085192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14085218 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14085242 CAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14087019 original size:158 final size:159
Alignment explanation
Indices: 14086753--14087105 Score: 496
Period size: 158 Copynumber: 2.2 Consensus size: 159
14086743 CTTTCTGTCG
* * **
14086753 GTTGGCTTAGGCATACGGAGTTCA-TCCCAGTCTAAGATTGGACCGGACCGAGGGTTATGGCAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGC
* ** * *
14086817 AGGATTGGCAGCACGTAGAGCGGGATCCGACCAATCCCCAGCTTGCGCATCGCGCCCCTCTGGCC
66 AGGATCGGCAGCACAAAGAGCGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
* * *
14086882 GACTGAGCGCCCGCACGCTCGTTTTGTTA
131 GACTGAGCCCCCGCACGCTCGTTTCGTGA
* * * *
14086911 GTTGCCTTAGGCATACAGAGTTCATTCCTAGT-TAAGATCAGACCGGATCGAGGGTTGTGGCAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGC
* *
14086975 AGGATCGGCAGCACAAAGAG-GGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
66 AGGATCGGCAGCACAAAGAGCGGG-ACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
* *
14087039 CGGCTGAGCCCCCGCACGCTCGTTTCGTGG
130 CGACTGAGCCCCCGCACGCTCGTTTCGTGA
14087069 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
14087106 CATACAGAGT
Statistics
Matches: 171, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
157 3 0.02
158 158 0.92
159 10 0.06
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (159 bp):
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGC
AGGATCGGCAGCACAAAGAGCGGGACCCGACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
GACTGAGCCCCCGCACGCTCGTTTCGTGA
Found at i:14087115 original size:26 final size:26
Alignment explanation
Indices: 14087079--14087131 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14087069 GTTGACTTAG
14087079 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14087105 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14087131 G
1 G
14087132 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14090326 original size:867 final size:874
Alignment explanation
Indices: 14088092--14090529 Score: 3280
Period size: 867 Copynumber: 2.8 Consensus size: 874
14088082 AGCTTAAGGT
* * *
14088092 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTCTTCTTCACCAGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGA
* * *
14088157 GCATCGCCTGAGAACCTGATCAGCGGCATTAGGGTTCCGATGATCGGGGGAGCCGGGGGGTGTGC
66 GCAT-GCC-GTGAA-CTGATC-G-GACATTGGGGTTCCGATGATC-GGGGAGCCGGGGGGTGTGC
14088222 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
125 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
14088287 TCGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCA-CAA
190 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
14088350 AGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
255 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
14088415 TAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA
320 TAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** *
14088480 CCTTCCGAAAAATTTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAA
385 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
14088545 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
450 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
14088610 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAT
515 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
14088675 CCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGT---GCCCGCTCGCTAGTTTCGTCGGTT
580 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCTAGTTTCGTCGGTT
* * * * * * *
14088737 GGCTTAGGCATACGAAGTTCATTCCCCA-TCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAA
645 GGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCAA
* * * * * * * **
14088801 GATTGACAGCATGTAGAGGGGGACCCGCCTGATCCTCGGGTTATGCATCCCGCCCCTCTGGCCGG
709 GATCGACAGAACGCAGAGGGGGACCCGCCTGATCCTAGGCTTATGCATCCCGCCCCTCTAGCCAA
* *
14088866 TTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTACTAATACGGATTTCATTCCTAGTCTAAGC
774 CTGAGCGCCCGCACGCTCATTTCGTGGGTTG---TACT-ATACGG---TCA---CTAG-CGAAG-
* *
14088931 ATATGCAATTCATTTCCAGTCTAAGATCAGACTGGACCGAGGTTTGCGGC
827 ATATGCAATTC--TTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
* * * * *
14088981 AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GTGGCACCATCACCGG
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAG-GGCACCATCGCCGG
* * * * * ** * *
14089045 AG-A-ACC-TG-ACCGA-C-GATATTGGTGTTCTGGCGATCGGGGAGGCCGGCGGGGTGCGCGCA
65 AGCATGCCGTGAACTGATCGGACATTGGGGTTCCGATGATCGGGGA-GCCGG-GGGGTGTGCACA
* *
14089104 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTG
128 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
14089169 AGAAATCACACCCTCTTAAAAAGCATTTGA-AGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
193 AGAACTCACACCCCCTTAAAAAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
** * * * *
14089233 TGTCTGAAATGGGGATGCTTTTTTCAAAATTGTCCCAAAATCTTGTACACATCGAATTTTTAGCT
257 TGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
14089298 AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTC
321 AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
14089363 CTTTC-AAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATCAAAAATAGAAAA
386 CTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
14089427 CGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCA
451 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
14089492 TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
516 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** * *
14089557 CACGACTTGCGTC-TCCCGTCTCTCTGGTAGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGT
581 CACGGCTTGCG-CATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCTAGTTTCGTCGGT
* * *
14089621 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTGCGGCAGCAG
644 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCAA
* *
14089686 GATCGGCAGAACGCAGAGGGGGACCCGACC-GATCCTAGGCTTGTGCATCCCGCCCCTCTAGCCA
709 GATCGACAGAACGCAGAGGGGGACCCG-CCTGATCCTAGGCTTATGCATCCCGCCCCTCTAGCCA
* *
14089750 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG-ACT-TA-GG-CA-TA-CGGAG-T-T-C-ATTC
773 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGTACTATACGGTCACTAGCGAAGATATGCAATTC
* *
14089805 -T-CGGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
838 TTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
* *
14089840 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGA
14089905 GCATGGCCGGTGAACTTGATCGGTGACATTGGGGTTCCGATGATCGGGGAGCCGGGGGGTGTGCA
66 GCAT-GCC-GTGAAC-TGATC-G-GACATTGGGGTTCCGATGATCGGGGAGCCGGGGGGTGTGCA
* *
14089970 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-TCCCCCTATCCCTCATCAAACCT
126 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
14090034 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCGAGTAGCCATTAAA
191 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
14090099 GTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCT
256 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * * *
14090164 GAATTGTTTTGTGCATGCCAACAAAAATAAAATGATCACATCTACCAAGTTTGGGCCCAAAACTT
321 AAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
14090229 CTACCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAG
386 CTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
14090294 CGAGTCGACTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAA
451 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
14090359 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATC
516 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * **
14090424 CACGGCTTGCGCATCCCGTGTCTCTGGCCGACATAGAGCCTGCCTGCCCGCTCCTTTCGTCGGTT
581 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGCTAGTTTCGTCGGTT
14090489 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
645 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
14090530 GAATTGAGGG
Statistics
Matches: 1362, Mismatches: 157, Indels: 82
0.85 0.10 0.05
Matches are distributed among these distances:
859 87 0.06
860 3 0.00
862 2 0.00
863 4 0.00
864 3 0.00
865 3 0.00
866 100 0.07
867 369 0.27
868 51 0.04
869 5 0.00
870 23 0.02
874 2 0.00
877 5 0.00
878 22 0.02
879 110 0.08
880 16 0.01
881 234 0.17
882 104 0.08
883 1 0.00
884 5 0.00
885 151 0.11
886 4 0.00
888 2 0.00
889 56 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (874 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGA
GCATGCCGTGAACTGATCGGACATTGGGGTTCCGATGATCGGGGAGCCGGGGGGTGTGCACACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCTAGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCAAGATCGAC
AGAACGCAGAGGGGGACCCGCCTGATCCTAGGCTTATGCATCCCGCCCCTCTAGCCAACTGAGCG
CCCGCACGCTCATTTCGTGGGTTGTACTATACGGTCACTAGCGAAGATATGCAATTCTTCCAGTC
TAAGATCAGACCGGACCGAGGGTTGCGGC
Found at i:14092704 original size:874 final size:878
Alignment explanation
Indices: 14090472--14093878 Score: 4395
Period size: 904 Copynumber: 3.8 Consensus size: 878
14090462 CCTGCCTGCC
* * * * **
14090472 CGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--TGAATT
1 CGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCTG-ACC
* * *
14090535 GAGGGTTG-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
65 GAGGGTTGCGGCAGCACATGCTGGACTCAGGAATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * *
14090599 ACCATCGTTGGAGCATCGCCAGAGAACCTGACCGGCG-CATTGGGGTTCCGACGATCGGGGGTGC
130 ACCATCG-CGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGC
* * *
14090663 CGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTAT
194 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
14090728 CGCTCATC-AACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
259 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
14090792 TAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
14090857 TCGAGTTCTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* ** * * * *
14090922 TGGCGTGAAAACTCCTTT-CGAAAAAATTTTAAAAGATCCCGAACCGCAAAAAGTTTCAAAAATC
454 TGGGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
14090986 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACCTTTGTA
519 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
14091051 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAAGTGCCTAAACGCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
14091116 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG-CGGATGTAGTCCCCGCCCGCCC
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCACCCGCCC
* * *
14091180 GCCCGCCCACTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGAC
714 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * *
14091245 CAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTT
779 CAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCTATCCCCG-CTT
* * * * *
14091310 ACGCATCCTGCCCCTCTGGCCAGATGAGCGCCCGCA
843 GCGCATCCTGCCCCTCTTGTCGGCTGAGCGCCCGCA
14091346 CGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTTATTTCCAGTCTAAGCTTCCAGAGTTCAT
1 CGCTCGTTTCGTTGGTTGACTTAGG----C-------A--T--A--C---G-----A-AGTTCAT
* * * *
14091411 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTG
40 TCCCAGTCTAAGATCGGATCTGACCGAGGGTTGCGGCAGCACATGCTGGACTCAGGAATGTGCTG
* * ** * * * *
14091476 GTCCCGCATTTTTCTTCACCGGGGCTCCATCGTCGGAGGATCGCCAGAAGAACCTGATCGGCGAC
105 GTGCCACATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCC-GGAGAACCTGACCGGCGAC
* * * *
14091541 ATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCTCACATGATGTACGTTGGGTGCTGGT
168 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
14091606 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCTAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
*
14091671 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
14091736 CAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTATGCATGCCAACAAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
*
14091801 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-GTTTCCAAAAAAATTTTAAAAAATC
428 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAAATC
***
14091865 TTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
493 CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
14091930 ACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACACA-AA
558 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* *
14091993 ATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
623 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
14092058 TGGCCAG-CGTAGTGCCCACCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
688 TGGCCAGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * *
14092122 AGTTCATTCCCAGTCTAAGATCGGACCAGAC-CAGGGTTGCGACAGTAGGATCGGCAGCACGCAG
753 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAG
*
14092186 AGGGGGACCTGGCCTATCCCCAGCTTGCGCATCCTGCCCCTCTTATCGGCTGAGCGCCCGCA
818 AGGGGGACCTGGCCTATCCCC-GCTTGCGCATCCTGCCCCTCTTGTCGGCTGAGCGCCCGCA
14092248 CGCTCGTTTCG-TGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCTGACC
1 CGCTCGTTTCGTTG-GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCTGACC
* * ***
14092312 GAGGGTTGCGGCAGCACATGCTGAACTCGGGAATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGC
65 GAGGGTTGCGGCAGCACATGCTGGACTCAGGAATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
** * * *
14092377 ACCATCGCAGGAGCATCGTTGGAGAACCTGACCGACGATATTGGGGTTCCGATGATCGGGGGGGC
130 ACCATCGC-GGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGC
*
14092442 C-GGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
194 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
14092506 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGC
259 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
14092571 CAGTAGTCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * ***
14092636 TCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATAAAAGGATCACGTGTACTTTGTT
389 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
14092701 TGGGTCCAAAACTCC-TTCCGAGAAAATTGTAAAAAATCCCAAACC-TCAAAAGTTTCAAAAATC
454 TGGGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
*
14092764 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** *
14092829 TGAATTTACAAGCCATAAAAATGGTGTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
14092894 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCTG-CATAGTGCCCGCCCGCCT
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCACCCGCCC
* * *
14092958 GCCCGCCCGCTCGTTTCATCGGTTAGCTTCGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
714 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * **
14093023 CAGACTGAGGGTTACGACAGCAGGATCAGTAGCACGCAGAGGGGGTCCTGGCCTATCCTGGGCTT
779 CAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCTATCC-CCGCTT
*
14093088 GTGCATCCTGCCCCTCTTGTCGGCTGAGCGCCCGCA
843 GCGCATCCTGCCCCTCTTGTCGGCTGAGCGCCCGCA
* *
14093124 CGCTTGTTTCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTC-------G--TT-GG--TT--GA---C-TT---AG-----GCATACGAAGTTCAT
* * * *
14093189 TCCCACTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGACTCAAGAATGTGCTG
40 TCCCAGTCTAAGATCGGATCTGACCGAGGGTTGCGGCAGCACATGCTGGACTCAGGAATGTGCTG
* * * * *
14093254 GTGCCACAGTTTTCTTCGTCAGGGGCACCATCGCGAAGCATCACCGGAGAACCTGACCGGTGGCA
105 GTGCCACATTTTTCTTCGTC-GGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACCGGCGACA
* * ** * * *
14093319 TTGGGGTTCCGGCTATCGGATGGCCCGGGTGGGGTGTGCGCACTTGATTTGCGATGGGTGCTGGT
169 TTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
14093384 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
*
14093449 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
14093514 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAA
* * * * ** *
14093579 AATACAAGGATCACGTCTGCCAAGTTTGGAGCTAAAACTCCATCTGAAAAAAAATTTT-ACAAAT
428 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCCAAAAAAATTTTAAAAAAT
* *
14093643 CGCCAAACCGTAAGAAAGTTTTCCAAAATCCGTGAAAAAATAGAAAAAACGAGTCGTCTTTGCCA
492 C-CCAAACCGTAA-AAAG-TTTCAAAAAT-CATG-AAAAATAG--AAAACGAGTCGTC-TTGCCA
* *
14093708 TGAAACTTCAACGTGAAGGC-TAAGGGAACCATTGTATGAATCATTACAGGCCATAAAAAGGGAC
549 TGAAACTTC-ACGTGAAGGCTTAAGGG-ACCATTGTATGAAT--TTACAAGCCATAAAAATGG-C
*** *
14093772 ATTGGCATGTTAGAAATATGAAAGATGTTGCCTAAAACCCACCTACCACCCCTATCGATCCGCGG
609 ATTGGCA-CACAGAAATATG-AAGATG-TGCCT-AAACCCACCTACCA-CCCTATCGATCCACGG
* * *
14093837 CTTGCCGCATTCCATCTCTCTGGCCCGACGTAGTGCCCACCC
669 CTTG-CGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCACCC
14093879 CCCCCGTTCG
Statistics
Matches: 2214, Mismatches: 224, Indels: 139
0.86 0.09 0.05
Matches are distributed among these distances:
873 73 0.03
874 335 0.15
875 190 0.09
876 193 0.09
877 1 0.00
878 1 0.00
882 1 0.00
883 1 0.00
885 2 0.00
886 2 0.00
887 3 0.00
888 2 0.00
889 2 0.00
890 2 0.00
891 2 0.00
893 1 0.00
894 3 0.00
897 2 0.00
898 1 0.00
900 25 0.01
901 11 0.00
902 303 0.14
903 174 0.08
904 390 0.18
905 289 0.13
906 16 0.01
907 2 0.00
908 4 0.00
909 9 0.00
910 3 0.00
911 7 0.00
913 13 0.01
914 21 0.01
915 24 0.01
917 17 0.01
918 6 0.00
919 9 0.00
920 6 0.00
921 5 0.00
922 14 0.01
923 19 0.01
924 18 0.01
925 12 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (878 bp):
CGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCTGACCG
AGGGTTGCGGCAGCACATGCTGGACTCAGGAATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
CCATCGCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCACCCGCCCGC
CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCTATCCCCGCTTGCG
CATCCTGCCCCTCTTGTCGGCTGAGCGCCCGCA
Found at i:14094251 original size:26 final size:26
Alignment explanation
Indices: 14094203--14094255 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14094193 GTTGACTTAG
*
14094203 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* **
14094229 GCATACGGAGTTCATTGTAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14094255 G
1 G
14094256 GTCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14096839 original size:26 final size:26
Alignment explanation
Indices: 14096809--14096861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14096799 GTTGACTTAG
*
14096809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14096835 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14096861 G
1 G
14096862 ATCGGACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14098469 original size:26 final size:26
Alignment explanation
Indices: 14098440--14098492 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14098430 GTTGACAAAG
*
14098440 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
** *
14098466 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
14098492 G
1 G
14098493 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:14099365 original size:26 final size:26
Alignment explanation
Indices: 14099329--14099381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14099319 GTTAACTTAG
14099329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14099355 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14099381 G
1 G
14099382 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14099879 original size:903 final size:897
Alignment explanation
Indices: 14097370--14100019 Score: 3651
Period size: 890 Copynumber: 2.9 Consensus size: 897
14097360 CACCTACTAG
* * * * *
14097370 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATC-GAACCGGACCGAAGGTTGCGGCAGC
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGTAGC
* * * *
14097434 AGGATCAGCAGCACGTAAAGGGGGACCCGGTCGATCCCCGACTTACGCATCCTGCCCCTTTGGCC
65 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCC-GCCCCTCTGGCC
* * *
14097499 AGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
129 AGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
14097564 GGATACGGAGTTCATTCCCAATCTAAGATCGCACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
194 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* *
14097629 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCAGCATCGCCGGAGCATCGCCGGAGA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGCCGGAGA
* * *** * * *
14097694 ACCTAACCGGCAGCATTGGGGTTTTAATGATCGGGGGGGCCAGAGGGTGTGCGCACATGATGTAC
323 ACCTGACCGGCGGCATTGGGGTTTCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** *
14097759 GATGGGTGCTGGTACTTTTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACA
387 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
14097824 CCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
452 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATG
* * *
14097889 GGGACACTTTTTGAAAAT-GTTAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
517 GGGACACTTTTT-CAAATGGTCA-CAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* ** * * *
14097953 ACATGCCAACAAAAATATGAGGATCACGTCTACGAA-TATTCGGGCCAACACTCCTTCTGAAAAA
580 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCCTTCTGAAAAA
* * **
14098017 ACTTTAAGAAGCCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
644 ATTTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
14098082 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAAGGCAT
709 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAT
* *
14098147 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGC
774 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** * *
14098212 ATCCCGTCTCTCTGGCCGGCGTAGTGCATACCCGCCCACCCGTCTGCTCGTTTTGTCGG
839 ATCCCGTCTCTCTGACCGGCGTAGTGCATACCCGACCACCCGCCCACTCGTTTCGTCGA
* * *
14098271 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGAGTTACGGTAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCA
* *
14098336 GGATCGACAGCACGCAGAGGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCC
66 GGATCGGCAGCACGCAGA-GGGGGACCCGGTCGATCCCCGACTTACGCAT-CCGCCCCTCTGGCC
* * * * ** * *
14098401 GGCTAAGCGCCCGCATGTTCGTTTTGTGGGTTGACAAAGGCATACAGAGTTAATTCCTAGTCTAA
129 AGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
14098466 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
194 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
*
14098531 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--C---G--T---CGGAGAA
259 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGCCGGAGAA
* *
14098586 CCTGATCGGTGGCATTGGGG-TTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
324 CCTGACCGGCGGCATTGGGGTTTC-GGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
14098650 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
388 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
14098715 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC-GAAATG
453 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CCTGAAATG
* ** *
14098779 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACCTTTTAGCTGAATTGTTTTGT
517 GGGACA-CTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * *
14098844 GCATGCCAA-AAAATATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAAA
580 GCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * ** * *
14098908 ATTTTAAAAAATCTCGAACCATAAAATTTTTGAAAATCGTGAAAAATAGAAAACAAGACGTCTTG
644 ATTTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
14098973 CCATG-AACTTCACGTGATGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAA
709 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAT
** *
14099037 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
774 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * **
14099102 ATCTCGTTTCTCTGATCGGCGTAGTGCCTGCCCGATCGTCCGCCCACTCGTTTCGTCGA
839 ATCCCGTCTCTCTGACCGGCGTAGTGCATACCCGACCACCCGCCCACTCGTTTCGTCGA
* * * * * *
14099161 TTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCAGTAGTA
1 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCA
* * * * * * *
14099226 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCACATCTCGCGCATCTGGCCA
66 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATC-CGCCCCTCTGGCCA
* * *
14099291 GCTGAGCACCCGCACGTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
130 GCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* *
14099356 CATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGTTGTGC
195 CATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
14099421 TCGGGCATGTCCTGGTGCCGTATTTTTCCTCGTCGGGCCACCATCACCGGAGCATCGCCGGAGAA
260 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGCCGGAGAA
* *
14099486 CCTGACCGCCGGCATTGGGGTTTCGGGGATCGGGGGGCCGGGGTGGGGTGTGCGCACATGATGTG
324 CCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGCC--GG-GGGGTGTGCGCACATGATGTG
* *
14099551 CAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
386 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
14099616 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCACTGAAGTGCCTGAAAT
451 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAAT
* *
14099681 AGGGACACTTCTTTCAAATGGTCACAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGT
516 GGGGACACTT-TTTCAAATGGTCACAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
*
14099746 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAA
580 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
14099811 TTTTAAAAAATCCCAAACCGTAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
645 TTTTAAAAAATCCCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
** *
14099876 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGAAATCAAAATGGCAT
709 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAT
* * * *
14099941 TGGCACATAGAAATACGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCAAGGCTTGTGC
774 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
14100006 ATCCCGTCTCTCTG
839 ATCCCGTCTCTCTG
14100020 GCCAGAGTAG
Statistics
Matches: 1528, Mismatches: 190, Indels: 59
0.86 0.11 0.03
Matches are distributed among these distances:
888 1 0.00
889 191 0.12
890 396 0.26
891 181 0.12
892 2 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 1 0.00
899 1 0.00
900 38 0.02
901 72 0.05
902 312 0.20
903 208 0.14
904 122 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCCGCCCCTCTGGCCAG
CTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGCCGGAGAACC
TGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGA
CACTTTTTCAAATGGTCACAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGACCGGCGTAGTGCATACCCGACCACCCGCCCACTCGTTTCGTCGA
Found at i:14101069 original size:26 final size:26
Alignment explanation
Indices: 14101033--14101085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14101023 GTTGACTTAG
*
14101033 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14101059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14101085 G
1 G
14101086 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14102423 original size:711 final size:706
Alignment explanation
Indices: 14101066--14102451 Score: 2219
Period size: 711 Copynumber: 2.0 Consensus size: 706
14101056 TAAGCATACG
* ** *
14101066 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTCGCACATGCTGGGCTCGGCC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTCGCACATGCTGGGCTCGGCC
* ** *
14101131 ATGTGCTGGTTCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATGCCAGAGAACCTGACT
66 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATGCCAGAGAACCTGACC
* *
14101196 GGCGGCATAGGGGTTCCGGCAATCGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GGCGGCATAGGGGTTCCGGCAATCGGGGGGCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
* ** *
14101261 GGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAA
196 GGTACTTGGAACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
14101326 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTT
261 GAGCATTTGAGAGTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTT
** *
14101391 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTATTTTGTGCATGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAATTATTTTGTGCATGCCAAAA
14101456 AAAATACAAGGATCACGTCTACCAAGTTTGGCCCCAAAACTCCTTTCGAAAAAATTTTAACAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGCCCCAAAACTCCTTTCGAAAAAATTTTAACAAAT
* *
14101521 CCTGAACCGCAAAAATTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCTGAACCACAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
14101586 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCCCGCAGA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGCAGA
* *
14101651 AATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
586 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
14101716 CTGGCCCACGTAGTGAC-CGCCCGCCTACTCGTTTCGTCAGTTGACTTAGGCCGGCA
651 CTGGCCCACGTAGTG-CTCGCCCGCCTACTCGTTTCGTCAGTTGACTTAGGCCGGCA
14101772 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGG-CAGCACATGCTGGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTC-GCACATGCTGGGCTCG-G
14101836 -CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCAGAGAACCTG
64 CCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TGCCAGAGAACCTG
* **
14101900 ACCGGCGGCATTA-GGGTTTCGGTGATCGGGGGGGGCAAGGGGGTGTGCGCACATGATGTGCAAT
128 ACCGGCGGCA-TAGGGGTTCCGGCAATC--GGGGGGC-AGGGGGTGTGCGCACATGATGTGCAAT
** *
14101964 GGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATGCCTCATCAAACCTCAAGAACTCACACCC
189 GGGTGCTGGTACTTGGAACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCC
*
14102029 CCTTAAAGAGCATTTGAGAGTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
254 CCTTAAAGAGCATTTGAGAGTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGG
*
14102094 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCCGAATCT-TTTTGTGC
319 ACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAAT-TATTTTGTGC
* ** **
14102158 ATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAATGTCCTTTCGAAAAAATT
382 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCCCCAAAACTCCTTTCGAAAAAATT
** *
14102223 TTAA-AAATTTTCGAACCATAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
447 TTAACAAATCCT-GAACCACAAAAA-TTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
14102286 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
14102351 TGGAACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
575 TGGAACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
*
14102416 ATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCC
640 ATCCCGTCTCTCTGGCCCACGTAGTGCTCGCCCGCC
14102452 CGCTCGCCCG
Statistics
Matches: 624, Mismatches: 44, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
705 1 0.00
706 102 0.16
707 35 0.06
708 2 0.00
709 7 0.01
710 155 0.25
711 317 0.51
712 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (706 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTCGCACATGCTGGGCTCGGCC
ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATGCCAGAGAACCTGACC
GGCGGCATAGGGGTTCCGGCAATCGGGGGGCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
GGTACTTGGAACTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
GAGCATTTGAGAGTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTT
TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAATTATTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGCCCCAAAACTCCTTTCGAAAAAATTTTAACAAAT
CCTGAACCACAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGCAGA
AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
CTGGCCCACGTAGTGCTCGCCCGCCTACTCGTTTCGTCAGTTGACTTAGGCCGGCA
Found at i:14102683 original size:26 final size:26
Alignment explanation
Indices: 14102647--14102697 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14102637 GTTGACTTAG
*
14102647 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14102673 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
14102698 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14103580 original size:26 final size:26
Alignment explanation
Indices: 14103551--14103603 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14103541 GTTGACTTAG
*
14103551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
14103577 GCATATGGATTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14103603 G
1 G
14103604 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14104485 original size:26 final size:27
Alignment explanation
Indices: 14104456--14104509 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
14104446 GTTAACTTAG
*
14104456 GCATACGGAGTTCGTTCCCAG-TCTAA
1 GCATACGGAGTTCATTCCCAGATCTAA
14104482 GCATACGGAGTTCATTCCCAGATCTAA
1 GCATACGGAGTTCATTCCCAGATCTAA
14104509 G
1 G
14104510 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGATCTAA
Found at i:14107966 original size:26 final size:26
Alignment explanation
Indices: 14107937--14107989 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14107927 GTTGACTTAG
14107937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14107963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14107989 G
1 G
14107990 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14110611 original size:26 final size:26
Alignment explanation
Indices: 14110581--14110633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14110571 GTTGACTTAG
14110581 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14110607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14110633 G
1 G
14110634 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14113267 original size:26 final size:26
Alignment explanation
Indices: 14113231--14113283 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14113221 GTTGACTTTG
14113231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14113257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14113283 G
1 G
14113284 ATCGAATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14114422 original size:26 final size:26
Alignment explanation
Indices: 14114386--14114438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14114376 GTTGACTTAG
14114386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14114412 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14114438 G
1 G
14114439 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14116897 original size:26 final size:26
Alignment explanation
Indices: 14116844--14116898 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
14116834 TGGGTTGACT
* * * *
14116844 TAAGCATATGGAGTTCATTCCCGGTC
1 TAAGCAAATGAAGTTCACTCCCAGTC
*
14116870 TAAGCAAATGAAGTTCACTCCCATTC
1 TAAGCAAATGAAGTTCACTCCCAGTC
14116896 TAA
1 TAA
14116899 TATCGAACTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCAAATGAAGTTCACTCCCAGTC
Found at i:14117755 original size:26 final size:26
Alignment explanation
Indices: 14117725--14117777 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14117715 GTTGACTTTG
14117725 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14117751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14117777 G
1 G
14117778 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14118654 original size:26 final size:26
Alignment explanation
Indices: 14118618--14118670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14118608 GTTGACTTAG
*
14118618 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
14118644 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
14118670 G
1 G
14118671 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:14119848 original size:578 final size:577
Alignment explanation
Indices: 14118753--14119882 Score: 1858
Period size: 578 Copynumber: 2.0 Consensus size: 577
14118743 TGGGGCACCA
* *
14118753 TCGTCGGAGCATCACTGGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCAGGG
1 TCGTCGGAGCATCACTGGAGAACCTAACTGGCGGCATTGGGGTTCCGGTGATCGCGGGGCCAGGG
* * *
14118818 GGGTGTGCACACATGATGTGCCACGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
66 GGGTGTGCACACAGGATGTGCAACGAGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
14118883 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGTTGCCAGTA
131 ATCAAACCACAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAATA
*
14118948 GCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
196 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
14119013 TTTTTAGCTGGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAATTTGGGGC
261 TTTTTAGCTGGAATTTTTTGAGCATGCCAACAAAAATACAAGGATCAGGTCTACCAATTTGGGGC
* * *
14119078 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATGGTGAAAA
326 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
14119143 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
391 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
14119208 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
456 CAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
14119273 ATCGATCCACGACTTGCGCATCCCGTTTCTCTGGTCGGCGTAGTGCCCGCATTTTTCT
520 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCATTTTTCT
* * *
14119331 TCGTCGGAGCATCGCTGGAGAACCTAACTGGTGGCATTGGGGTTCCGGTGATCGACGGGG-CTGA
1 TCGTCGGAGCATCACTGGAGAACCTAACTGGCGGCATTGGGGTTCCGGTGATCG-CGGGGCCAG-
* * *
14119395 GGGGGTGTGCGCACAGGATGTGCAATGGGCGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCC
64 GGGGGTGTGCACACAGGATGTGCAACGAGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
14119459 TCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAA
129 TCATCAAACCACAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAA
14119524 TAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
14119588 AGTTTTTAGCT-GAATTTTTTTGAGCATGCCAACAAACATACAAGGATCAGGTCTACCAAGTTTG
259 AGTTTTTAGCTGGAA-TTTTTTGAGCATGCCAACAAAAATACAAGGATCAGGTCTACCAA-TTTG
*
14119652 GGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGTG
322 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
14119716 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
387 -AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
14119781 ATTTACAAGCCATAAAAATGGCATTGGAACAT-AGAAATATGAAGATGTGCCTCAACCCACCTAC
451 ATTTACAAGCCATAAAAATGGCATTGG--CATCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
14119845 CACCGTTTCGATCCACGGCTTGCGCATCCCGTCTCTCT
514 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
14119883 AGCCAGCGTA
Statistics
Matches: 513, Mismatches: 32, Indels: 14
0.92 0.06 0.03
Matches are distributed among these distances:
576 3 0.01
577 136 0.27
578 333 0.65
579 38 0.07
580 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (577 bp):
TCGTCGGAGCATCACTGGAGAACCTAACTGGCGGCATTGGGGTTCCGGTGATCGCGGGGCCAGGG
GGGTGTGCACACAGGATGTGCAACGAGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCACAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAATA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGGAATTTTTTGAGCATGCCAACAAAAATACAAGGATCAGGTCTACCAATTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCATTTTTCT
Found at i:14122034 original size:68 final size:68
Alignment explanation
Indices: 14121920--14122054 Score: 216
Period size: 68 Copynumber: 2.0 Consensus size: 68
14121910 ATGTGCTGGT
* * * *
14121920 GCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT
1 GCCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
14121985 GGC
66 GGC
* *
14121988 GCCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATT
1 GCCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
14122053 GG
66 GG
14122055 TGTTCCGACG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (68 bp):
GCCACATTTTTCATCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
GGC
Found at i:14124150 original size:722 final size:715
Alignment explanation
Indices: 14122750--14124249 Score: 2177
Period size: 722 Copynumber: 2.1 Consensus size: 715
14122740 CACTTTCATT
* * * * * *
14122750 TCGTGGGTTGACTTCGGCATACGGAGTTCACTCCCAGTCTAAGAT-GGACCGGACCGAGGGTTGT
1 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * *** *
14122814 GGCAGCACATGCTGGGCTCGGACATTTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCAACGCC
66 AGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGCGGCACCAACGCC
* * * * *
14122879 GAAGCATCGCCTGAGAACGTGATCAGTGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTT
131 GAAGCATCGCCTGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGGT
* * *
14122944 GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCA
196 GTGCGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCA
* * *
14123009 AACCTCGAGAACTCACACCACTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
261 AACCTCGAGAACCCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
* *
14123074 TTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
326 TTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTATT
* *
14123139 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGGCAA
391 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * **
14123204 AACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATA
456 AACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
14123269 GAAAACGAGTCGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
521 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
14123334 ACCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTAT
586 ACCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTAT
* *
14123399 CGATCTACGGCCTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCTGCC
651 CGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCG--T---
14123464 CACTCGTA
711 ---TCGTA
*
14123472 TCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
1 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * *
14123537 AGCAGCACATGCTGGGCTCGGGCCTGTGCTGGTGCCGCATTTTTCTTCACCGCGGCACCATCGCC
66 AGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGCGGCACCAACG-C
* * * * * *
14123602 CG-AGCATCGTC-GAAGAACCTGACCGGCGGACTTTGGGGTTCTGGCGATCGGGGGGACGGGGGG
130 CGAAGCATCGCCTG-AGAACCTGACCAGCGG-CATTGGGGTTCCGACGATCGGGGGGACCGGGGG
*
14123665 GGTGTGCGCACATGATGTACGATGGGTGCCGGTA-TTGGCCCTTATATTGGGCC-CCTATCTCTC
193 GGTGTGCGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATATT-GGCCACCTATCCCTC
* *
14123728 ATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
257 ATCAAACCTCGAGAACCCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
14123793 GCAATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
322 GCAATTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
14123857 TATTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACTAGGATCACGTCTACCAAGTTTGGG
387 TATTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
*
14123922 GCCAAAACTCCTGCC-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATTAA
451 GCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
*
14123986 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAAT
516 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
14124051 TTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCAC
581 TTACAACCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCAC
* * * * * * *
14124116 CCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTAGCTGGCGTAGTGCCTGCCCGCTCGCCCGT
646 CCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGT
* *
14124181 TTGTT
711 TCGTA
* * * *
14124186 TCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTG
1 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
14124250 TGGAAGCAGG
Statistics
Matches: 698, Mismatches: 74, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
714 62 0.09
720 1 0.00
722 332 0.48
723 238 0.34
724 65 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (715 bp):
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
AGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGCGGCACCAACGCC
GAAGCATCGCCTGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGGT
GTGCGCACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCA
AACCTCGAGAACCCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
TTAAAGTGTCTAAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTATT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
ACCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCCTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCCCGTTCGTA
Found at i:14124400 original size:26 final size:26
Alignment explanation
Indices: 14124361--14124413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14124351 GTTGACTTAG
*
14124361 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
* *
14124387 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
14124413 G
1 G
14124414 ATTCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:14125290 original size:25 final size:26
Alignment explanation
Indices: 14125252--14125303 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14125242 GTTAACTTAG
*
14125252 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14125278 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14125303 G
1 G
14125304 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14125682 original size:875 final size:888
Alignment explanation
Indices: 14123488--14126933 Score: 4381
Period size: 905 Copynumber: 3.8 Consensus size: 888
14123478 GTTGGCTTAG
*
14123488 GCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * *
14123552 GCTCGGGCCTGTGCTGGTGCCGCATTTTTCTTCACCGC-GGCACCATCGCCCGAGCATCGTCGAA
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTT---CGCTGGCACCATCGCCGGAGCAAC--C-AA
* *
14123616 GAACCTGACCGGCGGACTTTGGGGTTCTGGCGATCGGGGGGACGGGGGGGGTGTGCGCACATGAT
124 GAACCTGACC-GCGGAC--TGGGGTTCCGGCGATCGGGGGG-CCGGGGGGGTGTGCGCACATGAT
* * * * * *
14123681 GTACGATGGGTGCCGGTA-TTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTCGAGAACC
185 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
14123745 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAA
250 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
14123810 AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTATTTAGCTGAATTTTT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
* *
14123874 TTGTGCATGCCAAAAAAAAATACT-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCC-
380 TTGTGCATG-CAAACAAAAATA-TAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* ** * *
14123937 AAAAAATTTTAAAAAATCCCAAAC-CG-CAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAG
443 AAAAAATTTTAAAAAA---C-GACTCGTC-AAAACCTT-GAAAA--A-T---AATA-AAAATGAG
* *
14124000 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATTAA
495 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
14124065 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCACG
560 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
14124130 GCTTGCGCATCCTGTCTCTCTAGCTGGCGTAGT----GCCTGCCCGCTCGCCCGT---TT-GTTT
625 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGC-CGCCCGTCCGTTCATTT
* * * * *
14124187 CATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTG
689 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
* * ** * * *
14124252 GAAGCAGGATCGACAGCACGAAGAGGGGGACCTAACCAATCCCTGGCTTACGCATCCTGCCCCTT
754 GTAGCAGGATCGGCAGCACGAAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTC
* *
14124317 TGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
819 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
14124382 TCTAA
884 TCTAA
* * * *
14124387 GCATACGGACTTCATTCCTAGTCTAAGATTC-GACCGGACCGAGGGTTCCGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * ** *
14124451 GCTCAGGCATGTGCTGGTG-CGTTATTTTTCTTCATCGGGGCACCATCGTCGGAGCGTCGCCGGA
65 GCTCAGGCATGTGCTGGTGCCG-CATTTTTCTTC-GC-TGGCACCATCGCCGGAGC--AACC-AA
* *
14124515 GAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGAGTGTGCGCACATGATG
124 GAACCTGACCG-CGG-ACTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-GTGTGCGCACATGATG
*
14124580 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
14124645 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
14124710 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * *
14124775 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
381 TGTGCATGCAAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* *
14124840 AAACTTTAAAAAA-G-CTCG-C-AAACCTTGAAAAAT-A-AAAAATGAGTCGTCTTGTCATGAAA
446 AAATTTTAAAAAACGACTCGTCAAAACCTTGAAAAATAATAAAAATGAGTCGTCTTGCCATGAAA
* *
14124899 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
511 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
14124964 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
576 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
14125029 TCTCTGGCCAACGTAGTGCCCGCCTGCCCGTCCGCCCGTCCGTTCATTTCCTCGGTTGGCTTAGG
641 TCTCTGGCCGACGTAGTGCCCGCCTGCCCG-CCGCCCGTCCGTTCATTTCGTCGGTTGGCTTAGG
* * *
14125094 CATATGGAGTTCTTTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
705 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* * ** * *
14125159 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTTTGCAT-GTCGCCCCTCTAGCCGGCTGAGCGC
770 CACGAAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCT-GCCCCTCTGGCCGGCTGAGCGC
* * *
14125223 CCGCACGCGCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
834 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14125278 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
14125342 CTC-GAGCATGTGCTGGTGCCGTATTTTTCTTCGCT-GAAGCATCGCCGGAG-AACC-TG-A-CT
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCTGGCACCATCGCCGGAGCAACCAAGAACCT
* * * *
14125401 GA-CG-GGACTGAGGTTCCGACGATCGAGGGGGTC-GGGGGGTGTACGCACATGATGTGCGATGG
130 GACCGCGGACTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
14125463 GTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
14125528 TTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
14125593 ACTTTTTTCAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAATTATTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG
*
14125658 CAAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTA
389 CAAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * *
14125723 AAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAT-A-GAAAACGAGTCGTCTTGCCA
454 AAAAA---CG-A-CTC-----G--TC-AAAACCTTGAAAAATAATAAAAATGAGTCGTCTTGCCA
*
14125786 TGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
506 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
14125851 CATGCACAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATC
571 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
14125916 CTGTCTCTCTGGCCGACGCAGTGCCCG-CTCACCCGTCTGCCCGCCCGCTCTTTTCGTCGGTTGG
636 CCGTCTCTCTGGCCGACGTAGTGCCCGCCT-GCCCG-CCGCCCGTCCGTTCATTTCGTCGGTTGG
* *
14125980 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGATGGTTGCGGTAGCAGGAT
699 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGAT
** * * *
14126045 AAGCGGCACGAAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG-CCCTCTGGCCGCCTG
764 CGGCAGCACGAAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTG
* * *
14126109 AGCGCCCGCAAGCTCGTTTCATGGGTTGACTTA-GCGATACAGAGTTCATTCCCAGTCTAA
829 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14126169 GCTTAGGGAGTTCATTTCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
14126234 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCT--GGCACCATCGCCGGAGCA--ACCA-AGA
* * *
14126299 ACCTGATCGACGGCATTGGGGTTCCGGCGATCGAGGGGCC-GGGGGGTGTGCGCACATGATGTGC
126 ACCTGACCG-CGG-ACTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * * *
14126363 GATAGATGCTGGTACTTGGCCCTTATATTCGCCCCTTATCCTTCATCAAACCTTGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
14126428 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCCTTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
14126493 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG-TTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * * *
14126557 CCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACACCTTCCAAAAAA
384 GCATGCAAACAAAAATATAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAAAAA
* * * * *
14126622 ATTTTAAAAAATCCCGAATCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAATAAGTCATCTT
448 ATTTTAAAAAA---CGACTCGTCAAAAC-CTTGAAAA--AT----AATA-AAAATGAGTCGTCTT
*
14126687 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
502 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
14126752 TTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCGTATCGATCCACGGCTTGCG
567 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
14126817 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCC-CAC--CCGTTCATTTCGTCGATT
632 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCGCCCGTCCGTTCATTTCGTCGGTT
* *
14126879 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
697 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
14126934 AGGCAGCACA
Statistics
Matches: 2247, Mismatches: 222, Indels: 154
0.86 0.08 0.06
Matches are distributed among these distances:
875 273 0.12
876 20 0.01
877 8 0.00
879 3 0.00
880 4 0.00
881 1 0.00
882 4 0.00
883 156 0.07
884 3 0.00
885 1 0.00
887 29 0.01
888 1 0.00
889 5 0.00
890 84 0.04
891 255 0.11
892 389 0.17
893 7 0.00
894 1 0.00
895 20 0.01
896 9 0.00
897 8 0.00
898 60 0.03
899 266 0.12
900 88 0.04
901 68 0.03
902 4 0.00
903 7 0.00
904 58 0.03
905 397 0.18
906 18 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGCACCATCGCCGGAGCAACCAAGAACCTG
ACCGCGGACTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCA
AACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAACGACTCGTCAAAACCTTGAAAAATAATAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCTGCCCGCCGCCCGTCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGAAGAGGG
GGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14128133 original size:717 final size:715
Alignment explanation
Indices: 14126176--14128363 Score: 3433
Period size: 717 Copynumber: 3.1 Consensus size: 715
14126166 TAAGCTTAGG
* ** *
14126176 GAGTTCATTTCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTC-AGG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCTGGGCTCGA-G
* * * * * * *
14126240 CATGTGCTGGTG-CTGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCAGAGAACCTG
65 CATGTGTTGGTGTC-GTATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
14126304 ATCGACGGCATTGGGGTTCCGGCGATC-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAG
129 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGG
* * * *
14126368 ATGCTGGTACTTGGCCCTTATATTCGCCCCT-TATCCTTCATCAAACCTTGAGAACTCACACCCC
194 GTGCT-GTACTTGGCCCTTATATTGGCCCCTAT-TCC-TCAACAAACCTCGAGAACTCACACCCC
* *
14126432 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
14126497 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG-TTTTAGCTGAATTTTTTTGTCCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* * * *
14126561 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAACACCTTCCAAAAAAATTT
386 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCCTTCCAGAAAAATTT
* * * ** * *
14126626 TAAAAAATCCCGAATCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAATAAGTCATCTTGCCA
450 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
*
14126691 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
14126756 CACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCGTATCGATCCACGGCTTGCGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCGTATCGATCCACGGCTTGCGCATC
* * * * *
14126821 CCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCACCCGTTCATTTCGTCGATTGGCTTAG
645 CCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAG
14126886 GCATACA
709 GCATACA
*
14126893 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCTTGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCTGGGCTCGAGC
*
14126958 ATGTGTTGGTGTCATATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
66 ATGTGTTGGTGTCGTATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* *
14127023 CGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGG
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGG
14127088 TGCTGTTACTTGGCCCTTATATTGGCCCCTA-TCACTCAACAAACCTCGAGAACTCACACCCCCT
195 TGCTG-TACTTGGCCCTTATATTGGCCCCTATTC-CTCAACAAACCTCGAGAACTCACACCCCCT
14127152 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
14127217 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGT
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
*** * *
14127282 CAAAAAAAATACAAGGATCACGTCTACCCTTTTTGGGACCAAAACTCTTTCCGGAAAAATTTTAA
388 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAGAAAAATTTTAA
* *
14127347 AAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATAA
453 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATAA
14127412 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
518 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
14127477 ACAGAAATATGAAGATGTACCTAAACGCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCG
583 ACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCG
* * *
14127542 TCTCTCTGGCTGGCATAGTGCCCGCCTGCCTGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGACGTAGTGCCCGCCTGCC-GCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCA
*
14127607 TACT
712 TACA
* *
14127611 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGACAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCTGGGCTCGAGC
* * *
14127676 ATGTGTTGGTGTCGTATTTTTCTCCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGTTGGTGTCGTATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
*
14127741 CGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
131 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
14127806 GCTAGTACTTGGCCCTTATATTGGCCCCTATTCCTCAACAAACCTCGAGAACTCACACCCCCTTA
196 GCT-GTACTTGGCCCTTATATTGGCCCCTATTCCTCAACAAACCTCGAGAACTCACACCCCCTTA
14127871 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
14127936 TTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
* *
14128001 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCTGAAAAATTTTAAAA
390 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAGAAAAATTTTAAAA
*
14128066 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAA
455 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATAAAA
* * *
14128131 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGC
520 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
14128196 AGAAATATGAAGATGTGCCTGAACGCACCTACCACCGTATTGATCCACGGCTTGCGCATCTCGTC
585 AGAAATATGAAGATGTGCCTAAACGCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTC
* *
14128261 TCTTTGGCCGACGTACTGCCCG-C--CCGCCCGCCCGCTT-GTTTCATCGGTTGGCTTAGGCATA
650 TCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCG-TTCGTTTCATCGGTTGGCTTAGGCATA
14128322 CA
714 CA
** * *
14128324 GAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTT
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
14128364 ACGGTAGCAG
Statistics
Matches: 1359, Mismatches: 100, Indels: 28
0.91 0.07 0.02
Matches are distributed among these distances:
713 71 0.05
714 4 0.00
716 1 0.00
717 615 0.45
718 561 0.41
719 107 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGGCAGCACATGCTGGGCTCGAGC
ATGTGTTGGTGTCGTATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
GCTGTACTTGGCCCTTATATTGGCCCCTATTCCTCAACAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAGAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATAAAAC
TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACGCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACA
Found at i:14128512 original size:26 final size:26
Alignment explanation
Indices: 14128476--14128526 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14128466 GTTGACTTAG
* *
14128476 GCATACGGAGTTCATTCGCAGTCTAT
1 GCATACAGAGTTCATTCCCAGTCTAT
14128502 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
14128527 AGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAT
Found at i:14129414 original size:26 final size:26
Alignment explanation
Indices: 14129378--14129430 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14129368 GTTTACTTAG
14129378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14129404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14129430 G
1 G
14129431 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14129732 original size:902 final size:898
Alignment explanation
Indices: 14127604--14129895 Score: 3477
Period size: 898 Copynumber: 2.5 Consensus size: 898
14127594 GTTGGCTTAG
*
14127604 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGA-GACAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGACAGCACATGCTGG
* * * * *
14127668 GCTCGAGCATGTGTTGGTGTCGTATTTTTCTCCGCCAGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATC-ACGGAG
14127733 AACCTGACCGACGGCATT-AGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
14127797 GCAATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATTCCTCAACAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14127861 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAA
*
14127926 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* *
14127991 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGACCAAAACTCCATCCTG-A
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTAGGG-CCAAAACTCCATCC-GAA
14128054 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** * *
14128119 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATAAAACTTCACCAGAAGGCTTAAGGGACCATTGTATGAATTCAAAAGCCATAAAAATG
* * ** * * *
14128184 GTATTGGCACGCAGAAATATGAAGATGTGCCTGAACGCACCTACCACCGTATTGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
14128249 GCGCATCTCGTCTCTTTGGCCGACGTACTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCT
646 GCGCATCCCGTCACTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
** * *
14128314 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGTAGCAGGATCG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACCGTAGCAGGATCA
* * * ** *
14128379 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCTCTCTGGCAGGCTGAG
776 GCAACACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCAGGCTGAG
* * *
14128444 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAT
841 CACCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
14128502 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * *
14128567 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGACGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATC-ACGGAGA
** * *
14128632 ACCTGACCGGTGGCATTG-GGGTTCCGACGACCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14128696 CGATGGGTGCTAGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14128761 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14128826 TGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTA
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
** *
14128890 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCTGAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAACTCCATCCGAAAAA
* ** *
14128955 ATTTTAAAAAATCTCGGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
14129020 GCCATGAAACTTCACCAGAAGGCTTAAGGGACCATTGTATGAATTCAAAAGCCGTAAAAATGGCA
519 GCCATAAAACTTCACCAGAAGGCTTAAGGGACCATTGTATGAATTCAAAAGCCATAAAAATGGCA
* *
14129085 TTGGCACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
584 TTGGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
14129150 CATCCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCACTCTGGCCGACGTACTGCCCGCCCGCCCG--C--CCGCTCGTTTCATCGGTTGGC
* ** * * *
14129215 TTAGGCATACGGAGTTCATTCGTAGTCTAAGATCAGACTGGA-CTGATGGTTGCCGTAGCAGGAT
710 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTACCGTAGCAGGAT
* * * **
14129279 CAGCAACACATAGAGAGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTTGGCTG
774 CAGCAACACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCAGGCTG
* *
14129344 AGCACCCGCACCCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCACCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
14129404 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * *
14129469 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCTTCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCA-CGGAGA
* * * *
14129534 ACCTGACCGACAGCATTGATGGTTCCGATGATTGGGGGGGCCGGGGGAGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGAGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGT
14129599 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14129664 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG-AA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAA
14129728 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
* * * *
14129793 GTGCATGCCAACAAAATACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATCCGAAA
388 GTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAACTCCATCCGAAA
* * **
14129858 AAATTTTAAAAGATCTTGAACCACAAAAAGTTTCAAAA
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
14129896 CCCTATCGAT
Statistics
Matches: 1259, Mismatches: 118, Indels: 27
0.90 0.08 0.02
Matches are distributed among these distances:
897 2 0.00
898 453 0.36
899 77 0.06
900 98 0.08
901 2 0.00
902 319 0.25
903 187 0.15
904 49 0.04
905 72 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACGGAGAA
CCTGACCGACGGCATTGAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTAGGGCCAAAACTCCATCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATAAAACTTCACCAGAAGGCTTAAGGGACCATTGTATGAATTCAAAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCACTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACCGTAGCAGGATCAGCAAC
ACACAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCAGGCTGAGCACCC
GCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14131074 original size:26 final size:25
Alignment explanation
Indices: 14131038--14131089 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14131028 GTTAACTTAG
14131038 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
14131064 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14131089 G
1 G
14131090 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14131622 original size:892 final size:897
Alignment explanation
Indices: 14129954--14131677 Score: 2604
Period size: 892 Copynumber: 1.9 Consensus size: 897
14129944 GCCCGCCCGC
*
14129954 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * *
14130019 GTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCCTATCGATCCCCGGCTTGTGCATCCCG
66 GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCCCATCGATCCCCGGCTTGCGCATCCCA
* * * * *
14130084 CCCCTCTAGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCAT
131 CCACTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
* *
14130149 TCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAG
196 TCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAG
* * *
14130214 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCACCGGAGC
261 CACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCAT--CC-G-G-
* ** *
14130279 ATCGCTGGAGAACTTGATCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGGGTGTGC
321 ATC-CTGGAGAACTTGACCGGCGGCATTGGGGTTCCAGCAATCGGGGGGGCCGAGGGGGGTGTGC
* *
14130344 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTATCCCTCCTCAAACC
385 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTAACCCTCATCAAACC
*
14130409 TCGAGAAATAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
450 TCGAGAAATAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCACTAGCCATTAA
14130474 AGTGTCTGAAGTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
515 AGTGTCTGAAGTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * **
14130539 TGAATTTTTTTATGCATGCCAACAAAAATAGAAGGATACGTCTACCAAGTTTGGGGCCAAAACTC
580 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTGGGGCCAAAACAA
** * * * * *
14130604 CTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAATAGTTTTAAAAATTGTGAAAACTAGAAAA
645 CTTCCAAAAAAATTAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
14130669 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTTTATGAATTTACAAGCCA
710 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCA
*
14130734 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATC
775 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGT-CCTAAACCCACCTACCACCATATCGATC
14130799 CACGGCTTGCGCATCCCGTCTCTATGGCCGGCATAGTGCCCGCCCGCCCGCCTGCTCGA
839 CACGGCTTGCGCATCCCGTCTCTATGGCCGGCATAGTGCCCGCCCGCCCGCCTGCTCGA
* * * *
14130858 TCGTTTCATTGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAGGATC-GAACCAGACCGAG
1 TCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAG
* * *
14130922 GGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGATCCCGTCGATCCCCGGCTTGCGCATCCC
65 GGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCCCATCGATCCCCGGCTTGCGCATCCC
* *
14130987 ACCACTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCA
130 ACCACTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCA
* ** *
14131052 TTCCTAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGATCAGACCGAGGGTTGCGGCA
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCA
** * *
14131116 GCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGGACCAT-C-G-T-C
260 GCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCCGGATCC
*
14131177 -GGAGAACTTGACCGGCGGCATTGGGGTTCCAGCAATCGGGGGGGCCG-GTGGTGGTGTGCGCAC
325 TGGAGAACTTGACCGGCGGCATTGGGGTTCCAGCAATCGGGGGGGCCGAG-GGGGGTGTGCGCAC
* * *** *
14131240 ATGATGTGGGATGGGTGCTAGTACTTGGCCCTTATCTTGGCCTTTTAACCCT-ATCAAACCTTGA
389 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTAACCCTCATCAAACCTCGA
* * *
14131304 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTG
454 GAAATAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCACTAGCCATTAAAGTG
*
14131369 TCTGGAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
519 TCT-GAAGTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
14131433 ATTGTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACAACT
583 ATTGTTTTATGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCAAAACAACT
* ** * *
14131498 TCGAAAAAAATTAAAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGACAACG
647 TCCAAAAAAATTAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
14131563 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
712 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATA
* *
14131628 AAAATGGCATTGGCATGCAGAAATATGAAGATGTCCTCAACCCACCTACC
777 AAAATGGCATTGGCACGCAGAAATATGAAGATGTCCTAAACCCACCTACC
14131678 CCCTTAAAGA
Statistics
Matches: 741, Mismatches: 75, Indels: 21
0.89 0.09 0.03
Matches are distributed among these distances:
891 176 0.24
892 280 0.38
893 1 0.00
895 1 0.00
897 1 0.00
900 1 0.00
903 80 0.11
904 201 0.27
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
TCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCCCATCGATCCCCGGCTTGCGCATCCCA
CCACTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAG
CACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCCGGATCCT
GGAGAACTTGACCGGCGGCATTGGGGTTCCAGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTAACCCTCATCAAACCTCGAGA
AATAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCACTAGCCATTAAAGTGTC
TGAAGTCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
GTTTTATGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTGGGGCCAAAACAACTTCCA
AAAAAATTAAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTCCTAAACCCACCTACCACCATATCGATCCACGGCT
TGCGCATCCCGTCTCTATGGCCGGCATAGTGCCCGCCCGCCCGCCTGCTCGA
Found at i:14131857 original size:225 final size:226
Alignment explanation
Indices: 14131465--14131903 Score: 702
Period size: 225 Copynumber: 1.9 Consensus size: 226
14131455 AAATACAAGG
* * * *
14131465 ATCACGTCTACCAGGTTTGGGGCCAAAACAACTTCGAAAAAAATTAAAAAAAATCCTGAACTGCA
1 ATCACGTCTACCAAGTTTGGGACAAAAACAACTTCGAAAAAAATTAAAAAAAATCCCGAACTGCA
*
14131530 AAAAGTTTCAAAAATCGTGAAAAATAGACAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
66 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
14131595 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
131 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
*
14131660 GT-CCTCAACCCACCTACCCCCTTAAAGAGC
196 GTGCCTAAACCCACCTACCCCCTTAAAGAGC
** ** *
14131690 ATCACGTCTACCAAGTTTGGGACAAAAACTCCTTTCG-AAAAAATTTTAGAAAATCCCGAACTGC
1 ATCACGTCTACCAAGTTTGGGACAAAAACAAC-TTCGAAAAAAATTAAAAAAAATCCCGAACTGC
* *
14131754 AAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
65 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
14131819 CTTAAAGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGA
130 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
14131884 TGTGCCTAAACCCACCTACC
195 TGTGCCTAAACCCACCTACC
14131904 ACCATATCGA
Statistics
Matches: 195, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
225 176 0.90
226 19 0.10
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (226 bp):
ATCACGTCTACCAAGTTTGGGACAAAAACAACTTCGAAAAAAATTAAAAAAAATCCCGAACTGCA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCCCCTTAAAGAGC
Found at i:14132188 original size:26 final size:26
Alignment explanation
Indices: 14132146--14132198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14132136 GTTGACTTAG
* *
14132146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
14132172 GCATACGGAGCTAATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
14132198 G
1 G
14132199 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTAATTCCCAGTCTAA
Found at i:14134658 original size:26 final size:26
Alignment explanation
Indices: 14134622--14134674 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14134612 GTTGACTTAG
14134622 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
14134648 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14134674 G
1 G
14134675 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:14135549 original size:26 final size:26
Alignment explanation
Indices: 14135513--14135565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14135503 GTTGACTTAG
*
14135513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14135539 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14135565 G
1 G
14135566 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14136153 original size:891 final size:892
Alignment explanation
Indices: 14132889--14138981 Score: 8259
Period size: 891 Copynumber: 6.8 Consensus size: 892
14132879 GTTGGCTTAG
* **
14132889 GCATACAGAGTTCATTCCCAATCTAAGAT-GGA----ACCAAGGGTTGCGGCAGCACATGCTGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
14132949 CTCGGGCATGTGCTGGTGCCGCACTTTTCTTCA-CCGAGGCACCATCGTCGGAGCATCATCGGAG
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTT-AGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * *
14133013 AACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCC--GGGG-G-G-G----T-A--TG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * **
14133066 CGAAGGGTGCTAGTACTTGGCCCTTATATTGGGCTCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
14133131 ACACCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
14133196 GGGGA-ACGTTTTTCGAATGGTCACAAAATCTTGTACACATCAAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
14133260 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGACCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
14133325 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
14133390 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14133455 TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
14133520 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCAACCGCCTGTCTGCCAGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTG-----CC-CC-G-C--CC-GCTCGTTTCGTCGGTTGGC
* ** * *
14133585 TTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGA-TCAGACCGAGGGTTGTGACAGCAGGAT
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGTGGCAGCAGGAT
* ** ** * *
14133649 CAGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCCTGCGCATCCTGCCCCTCTGGCCGGCTG
768 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
14133714 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
14133774 G-AT-C-G-G----------A--T---A---GACC-G----AGGGTTGCGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
14133812 CTCCG-GCATGTGTTGGTGCTGCATTTTTCATCA-TCGGGGCACCATCGCCAGAGCATCGTCGGA
66 CT-CGAGCATGTGCTGGTGCTGCATTTTTC-TTAGTCGGGGCACCATCGCCGGAGCATCATCGGA
* * *
14133875 GAACTTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* **
14133939 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
14134004 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
14134069 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
14134134 GCACATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
14134199 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
14134264 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
14134329 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTAC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
14134394 GTATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCCCGCCTGCTCGTTTCGTCGGTTTG
649 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-G--C-CCCG--C-CC-GCTCGTTTCGTCGGTTGG
** * * *
14134459 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGACGGTTGCGGCAGCAGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAGGAT
* * * * *
14134524 CGGCAGCACACA-AGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCGGCAG
768 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
14134588 AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
833 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
14134648 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
14134713 CTCGGGCATGTGTTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* *
14134778 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
14134843 GGTGGGTGCTTGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
14134908 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14134973 GTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
14135038 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * * * * *
14135103 TTTTAAAAAATCCCCAATCGCAAAAAGTTTTGAAGATCGTGAAAAATGGAAAACAAGCCATCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
** *
14135168 CCATGAAACTTCTTGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
14135233 TGGCATACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14135298 ATCCCGTCTCTCTGGCCGGCGTAGTG-CCCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATATGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * ** *
14135362 AGTTCATTCCCAATCTAAGATCGGACTGGACCAAGTGTTGTGGCAGCAAGATCAACAGCATGCAG
716 AGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG
* * ** * * *
14135427 AGGGGGACCCCATCGATCCCCGGCTTATGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGC
781 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
14135492 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
14135539 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
14135604 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTAGCCGGGGCACCGTCGTCGGAGCATCATTGGAGA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * *
14135669 ACCTGACTGGCGGCTTTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGA
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
14135733 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
14135798 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
14135863 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
14135928 GCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
14135993 TTTTAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 TTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
14136058 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
***
14136123 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATTACTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
14136188 CATCCCGTCTCTCTGGCCGGCATAGTG-CCCGCCCGCTCATTTCATCATTTGGCTTAGGCATACG
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * *
14136252 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGTAGCAGGATTGGCAGCACGCA
715 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
** * * * * *
14136317 GAGGGGGACCCGGTCGATACCCGACTTGCACATCCCGCCACTCTGGCCGGCTGAGCACCCGTACG
780 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * * *
14136382 CTCGTTTAGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
845 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
14136430 GCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGACCAAGGATTTTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
14136495 CTC-AGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGA-GCATGTGCTGGTGCTGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * *
14136559 AACGTAACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
14136624 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCTCTCATCAAACCTTGAGAACTCAG
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
14136689 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
14136754 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14136819 TGCATTCCAAAAAAAATACAAGGCTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAC-AAGAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AA
* ** * *
14136883 AATTTTAAAAAATCCCAAACCGCAAAAAGGTTT-GGAAATCATAAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
14136947 TTGCCATGAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ** *
14137012 CATTGGAACGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
14137077 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCAGCTGCCCGTCCGCCCGCTCATTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGC---GT----AG-TG-CC--CCGCCCGCTCGTTTCGTCGGTTG
* * * * *
14137142 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCAAAGGTTGAGGTAGCAAGA
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAGGA
* * * *
14137207 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTAGCCGGCT
767 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
14137272 GAGCACCCGCGCGCTAATTTCGTGGGTTGACTTAGGCATACAGAGATCATTTCCAGTCTAA
832 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14137333 GCATATGGAGTTCATTCCCAGTCTAAGATCAGG-CCGGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATC-GGACCGGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * * *
14137397 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGTGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * * * * *
14137462 AACCTAACCGACGGCATTAGGGTTTCGGCAATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
14137527 CGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGACCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
14137592 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGACAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14137657 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTAAATTTCTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** ** *
14137722 TGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGTAGACAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
14137787 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
14137852 GCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14137917 TTGGCATGGAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
**
14137982 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCATCCGCCCGCTCGTTTCGTTAGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGT----G-----CC--CCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
14138047 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-CGAATCGAGGGTTGTGGTAGCAGGAT
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCAAGGGTTGTGGCAGCAGGAT
* * * * * * *
14138111 CGACATCACGCA-AAGGGGACCCGACCGATCCCCAGCTTG-GACATCGCGCCCCTCCGACCGGCT
768 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCT
* * * * *
14138174 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
832 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
14138235 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
14138300 CTCGGGCATGTGCTGTTGCTGCATTTTTCTTCA-TCGGGGCACC-TCGCCGGAGCATCGTCAGAG
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTT-AGTCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * *
14138363 AACTTGACCGACGGCATTAGGGTTTCGACGATC-GGGGGGCCGGGAGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATG
* *
14138427 TGTGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG-AGAACT
* * *
14138491 CACACCCCCTTAAGGAGCATTTGAGATTCTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
14138556 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
14138621 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
14138685 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTCCAAAAATAGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
14138750 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
***
14138815 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
14138880 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCATTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG--C-CCCGCCCGCTCGTTTCGTCGGTTGGCT
*
14138945 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
14138982 CGAGGGTTGC
Statistics
Matches: 4631, Mismatches: 480, Indels: 182
0.87 0.09 0.03
Matches are distributed among these distances:
862 8 0.00
863 99 0.02
864 9 0.00
865 1 0.00
866 2 0.00
867 1 0.00
869 1 0.00
871 2 0.00
872 1 0.00
874 231 0.05
875 413 0.09
876 6 0.00
877 3 0.00
878 2 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
890 361 0.08
891 949 0.20
892 281 0.06
893 1 0.00
894 5 0.00
895 1 0.00
896 5 0.00
897 59 0.01
898 5 0.00
899 5 0.00
900 14 0.00
901 379 0.08
902 902 0.19
903 872 0.19
904 5 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14136440 original size:26 final size:26
Alignment explanation
Indices: 14136404--14136456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14136394 GTTGACTTAG
14136404 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14136430 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14136456 G
1 G
14136457 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14138246 original size:26 final size:26
Alignment explanation
Indices: 14138209--14138261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14138199 GTTGACCTAG
14138209 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
14138235 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14138261 G
1 G
14138262 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14140749 original size:542 final size:541
Alignment explanation
Indices: 14139690--14140768 Score: 1849
Period size: 542 Copynumber: 2.0 Consensus size: 541
14139680 TCAGACCGAG
14139690 GGTTGCGACAGCAGGATCAGCAGCACATAGAGGGGGACCTGGCCGATCCCTGGCCTGCGCATCCC
1 GGTTGCGACAGCAGGATCAGCAGCACATAGAGGGGGACCTGGCCGATCCCTGGCCTGCGCATCCC
14139755 TTCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCA
66 TTCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCA
* *
14139820 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCTGCACATGATGGGCTCGGGCATGTGTT
131 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGATGGGCTCGGGCATGTGTT
* * **
14139885 GGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACTTGACCGGTGGC
196 GGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGC
* *
14139950 ATTGGGGTTTCGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
261 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
14140015 CTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
326 CTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
14140080 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
391 ATTTGAGATTTTACAGGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
14140145 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATCTTTTTGTGCATGCCAAAAAAA
456 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATCTTTTTGTGCATGCC-AAAAAA
*
14140210 ATACAAGGATCATGTCTATGAA
520 ATACAAGGATCACGTCTATGAA
14140232 GGTTGCGACAGCAGGATCAGCAGCACATAGAGGGGGACCTGGCCGATCCCTGGCCTGCGCATCCC
1 GGTTGCGACAGCAGGATCAGCAGCACATAGAGGGGGACCTGGCCGATCCCTGGCCTGCGCATCCC
14140297 TTCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCA
66 TTCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCA
* *
14140362 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTT
131 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGATGGGCTCGGGCATGTGTT
* ** *
14140427 GGTG-TCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCG-CAAGAGAACCTGTCCGACG
196 GGTGCT-GCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTC-AGAGAACCTGACCGACG
* *
14140490 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
259 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* **
14140554 TACTTGGCCCTTATATTGGCCCCCTATCTTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
324 TACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
14140619 GCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
389 GCATTTGAGATTTTACAGGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
** *
14140684 TCAAATGGTCACAAAATCTTGTACTTTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCCAAAA
454 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATCTTTTTGTGCATG-CCAAAA
*
14140749 AAGTACAAGGATCACGTCTA
518 AAATACAAGGATCACGTCTA
14140769 CCAAGTTTGG
Statistics
Matches: 506, Mismatches: 28, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
541 243 0.48
542 263 0.52
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (541 bp):
GGTTGCGACAGCAGGATCAGCAGCACATAGAGGGGGACCTGGCCGATCCCTGGCCTGCGCATCCC
TTCCCTCTGGCCAGCTGAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCACATGATGGGCTCGGGCATGTGTT
GGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATCTTTTTGTGCATGCCAAAAAAA
TACAAGGATCACGTCTATGAA
Found at i:14141256 original size:26 final size:26
Alignment explanation
Indices: 14141220--14141272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14141210 GTTGACTTAG
14141220 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14141246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14141272 G
1 G
14141273 ATCAGATCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14142159 original size:26 final size:26
Alignment explanation
Indices: 14142122--14142174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14142112 GTTGACTTAG
*
14142122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14142148 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14142174 G
1 G
14142175 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14142321 original size:902 final size:900
Alignment explanation
Indices: 14140348--14146359 Score: 7953
Period size: 902 Copynumber: 6.8 Consensus size: 900
14140338 GTTGACTTAG
* *
14140348 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGG
**
14140413 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGCAAGAG
65 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * *
14140477 AACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
14140542 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTTTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
14140607 CCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
14140672 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTTTTCGAGTTTTTAGCTAAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** *
14140737 GCATGCCCAA-AAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCAACCAAAAAA
389 GCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
* * *
14140801 ATTTTAACAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCT
452 ATTTTAA-AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
14140866 TGCCATTAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
14140931 ATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACGCTATTGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
14140996 G-ATTCCGTCTCTCTGGCCGGC--A-T-AATGCCCGCCCGCCCACCCACTCATTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * *
14141056 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAGCAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGAT
* * * * *
14141121 C-GACAGCACACAAAGGGGGACCCGGCCGAACCTCGGCTTTCGCATCCCGCCCCTCTGGCCGACT
776 CAG-CAGCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
14141185 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** *
14141246 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCTGGCCGAA-GGTTGTGATAGTGCATGCTGA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACC-AAGGGTTGTGGCAGCACATGCTGG
* * *
14141310 GCTCGGGCATGTGTCGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCAGGAG
64 GCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
14141375 AACCTGTCCGGCGGCTTTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
14141440 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
14141505 CCCCCTTAAGGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14141570 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
14141635 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACACCTTCCGAAAAAG
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAA
* * * *
14141700 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTCG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
14141765 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
14141830 TGAAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14141895 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
14141960 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCA
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCA
* * * * * * **
14142025 GCAACACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGAATCCCGCCCCTCTGGCCGGTTGAG
778 GCAGCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
14142090 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ***
14142148 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGG
* *
14142213 CTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
14142278 ACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGGCCGGGGGGTGTGCGCACATGAAT-TG
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATG-ATGTG
* * * * *
14142341 CGGTGGGTGGTGGTACTGGGCCCCTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * *
14142406 ACCCCCTTATCGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
14142471 GCTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14142536 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTTCCAAAATTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAAA
* * * ** * * *
14142601 ATTTTAAAAAATCCCCAATCGTAAAAAGTTTTGAAGATCGTGAAAAATGGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
14142666 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
14142731 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
14142796 CATCCCGTCTCTCTGGTCGGCGTAGTACCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
14142861 TTAGGCATAAAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATC
* ** *
14142926 GGCAGCACGCAAAGGTGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
777 AGCAGCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* *
14142991 GCACCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
842 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14143050 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * ** * * *
14143115 CTTGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGTCGCCATCGCTAGG-GCATCGCCGGAG
65 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCCGGAG
* * * * *
14143179 AACCTGACTGG-GGCATTGGGGTTCCGACGATTGGGGGGGCAGGGGGGTCTGCACACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
14143243 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14143308 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14143373 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * *
14143438 -TGCATGCCAAGAAAAATACAAGGATCACGGCTTCCAAGTTTGGGGCAAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
* * * * *
14143502 AATTTAAAAAAATCTTGAGCCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
**
14143567 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGC
516 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** **
14143632 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACATTATCGATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14143697 GCATCCCGTCTCTCTGGCCGGCATAATGCCTACCCGCCCGCCCGCCCGCTCGTTCCGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
14143762 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGTCTGAGGGTTGCAGTAGTAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGAT
* * * * * **
14143827 CAGCAGCACGCAGAGGTCGAGCCGACCGATCCCCGGCTAGCGCATCCTACCCCTCTGGCCGACTG
776 CAGCAGCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
14143892 AGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCACTCCCAGTCTAA
841 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14143952 G-AT-C-AG---A-T--CGGTCCAAG---GG-T--TA-C-A-----GT---AGCACAAGCTGGGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGC
** * * * * *
14143992 TCGGGCATGTGTT-GTGTCGCATTTTTCTTCACCCGGACATCATCGCCGGAGCATCACCGGAGAA
66 TCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
14144056 CCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGCCATGGGGGGTGTGCGCACATGATTTGC
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGC
* *
14144121 GGTGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
14144186 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC---AG----T-AA----C-------
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
14144232 ----CAC-----T--AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTGTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
14144286 GCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAAAA
* * * * *
14144351 TTTTAAAAAATCCCCAACCGTAAAAA-TTTCAAAAATCGTGAAAAATGGAAAATGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
14144415 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
14144480 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14144545 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
14144610 TAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAAGGTTGCAGCAGTAGGGTTT
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTA-GGATC
* * * * * * * * *
14144675 AG-TGCACACAGAGGTCGA-GCGGACCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGTCGATTG
777 AGCAGCACGCAAAGGTGGACCCGG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
14144738 AGCACCCGCACGCTCGTTTTATGGGTTAACTTAGGCATACGGAGTTCATTCCTAG--T--
841 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
14144794 -C-TA--AG---------A-TC--AGATCGG-T----CCAAGGGTTGCAGTAGCACATACTGGGC
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGC
** *
14144838 TCGGGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAA
66 TCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
** * * * *
14144903 CCTGATTGGCGACATTCGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGACGTGCGA
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
14144968 TGGGTGCTGGTCCTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTC-AGAACCCACAC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACAC
*
14145032 CCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
14145097 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAAATTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
14145162 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCTAAAACTCCTTTCGAAAAAATT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATT
* * *
14145227 TTAAAAAATCTTGATCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
14145292 ATGAAACTTCTTGTGAATGCTTAAAGGACCATTGCT-TGAATTTACAAGCCATAAAAATGGCATT
520 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCATT
* * *
14145356 GGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
14145421 TCCCGTCTCTCTGGCCGGCATA--G--TGCCCACCCACCCG-CC-C-CGTTCCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
14145479 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGACGG-T-CATGGCAGTAGGATC
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCA--GCAGTAGGATC
* * * * * *
14145542 GGTAGCACACAAAGGTGGACCCGACCGATCCTCGGCTTGCGCA-CCCGCCCCTTTGGCC-AGCTG
777 AGCAGCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTG
* * * * *
14145605 AGCTCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
841 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14145665 GCAAACTGAGTTCTTTCCCAATCTAGGATTGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * *
14145730 CTCGAGCATGTGTTGGTGTTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * *
14145795 ACCTAACCGGCGATATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTTTGCGCACATGATGTGCA
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
14145860 ATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
14145925 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
14145990 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
14146055 CATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGCTAAAACTCCTTTCAAAAAAATT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
14146120 TTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCC
455 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
14146185 ATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTC
520 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
14146250 GCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * *
14146315 CCCGTCTCTCTGGCCGATGTAGTGCCCGCCCCACCCGTCCGCCCG
650 CCCGTCTCTCTGGCCGGCGTAGTGCCTG-CCCGCCCGCCCGCCCG
14146360 TCGATGGTGC
Statistics
Matches: 4525, Mismatches: 470, Indels: 236
0.87 0.09 0.05
Matches are distributed among these distances:
835 2 0.00
837 3 0.00
838 4 0.00
841 3 0.00
843 1 0.00
844 1 0.00
845 119 0.03
846 397 0.09
847 203 0.04
848 2 0.00
849 1 0.00
852 1 0.00
853 2 0.00
854 3 0.00
857 1 0.00
865 1 0.00
866 3 0.00
867 68 0.02
868 99 0.02
869 5 0.00
870 3 0.00
871 12 0.00
872 1 0.00
873 3 0.00
874 46 0.01
875 317 0.07
876 45 0.01
877 119 0.03
879 2 0.00
884 1 0.00
885 2 0.00
886 3 0.00
888 5 0.00
889 3 0.00
892 9 0.00
893 586 0.13
894 1 0.00
895 2 0.00
897 182 0.04
898 443 0.10
899 4 0.00
900 2 0.00
901 24 0.01
902 1777 0.39
903 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGC
TCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCAGCA
GCACGCAAAGGTGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCAC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14143054 original size:26 final size:26
Alignment explanation
Indices: 14143024--14143076 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14143014 GTTGACTTAG
*
14143024 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14143050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14143076 G
1 G
14143077 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14149753 original size:26 final size:26
Alignment explanation
Indices: 14149717--14149768 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14149707 GTCTGGTCTG
*
14149717 ATCTTAGACTGGGAATTAACTCCGTA
1 ATCTTAGACTGGGAATGAACTCCGTA
14149743 ATCTTAGACTGGGAATGAACTCCGTA
1 ATCTTAGACTGGGAATGAACTCCGTA
14149769 TGCCTCAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
ATCTTAGACTGGGAATGAACTCCGTA
Found at i:14150416 original size:226 final size:226
Alignment explanation
Indices: 14150015--14150454 Score: 711
Period size: 226 Copynumber: 1.9 Consensus size: 226
14150005 ATCGATATGT
* *
14150015 GGTAGGTGGGTTTAGGCACATCATCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTGAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
14150080 TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
66 TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTT
* * * *
14150145 CACAATTTTTGAAACTTTTCGCAGTTCGGGATTTTCTAAAA-TTTTTTCGAAAGGAGTTTTTGTC
131 CACAATTTTTGAAACTTTTCGCAGTTCAGGATTTTCTAAAATTTTTTTCG-AAGCAGTTTTGGCC
*
14150209 CCAAACTTGGTAGACGTGATGCTCTTTAAGGG
195 CCAAACCTGGTAGACGTGATGCTCTTTAAGGG
* *
14150241 GGTAGGTGGGTTGAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
1 GGTAGGTGGGTTGAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
14150306 TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTT
66 TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTT
* * * * ** *
14150371 CACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTTTAATTTTTTTCGAAGCTGTTTTGGCCC
131 CACAATTTTTGAAACTTTTCGCAGTTCAGGATTTTCTAAAATTTTTTTCGAAGCAGTTTTGGCCC
14150436 CAAACCTGGTAGACGTGAT
196 CAAACCTGGTAGACGTGAT
14150455 CCTTGTATTT
Statistics
Matches: 196, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
226 188 0.96
227 8 0.04
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.39
Consensus pattern (226 bp):
GGTAGGTGGGTTGAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTT
CACAATTTTTGAAACTTTTCGCAGTTCAGGATTTTCTAAAATTTTTTTCGAAGCAGTTTTGGCCC
CAAACCTGGTAGACGTGATGCTCTTTAAGGG
Found at i:14150857 original size:25 final size:26
Alignment explanation
Indices: 14150829--14150880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14150819 CTGATCCGAT
*
14150829 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14150854 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14150880 C
1 C
14150881 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14151783 original size:26 final size:26
Alignment explanation
Indices: 14151732--14151784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14151722 CCGGTTTGAT
* *
14151732 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14151758 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
14151784 C
1 C
14151785 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14152514 original size:26 final size:26
Alignment explanation
Indices: 14152485--14152537 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14152475 CCGGTCTGAT
14152485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14152511 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14152537 C
1 C
14152538 CTAAGTATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14152721 original size:753 final size:755
Alignment explanation
Indices: 14151268--14152726 Score: 2235
Period size: 753 Copynumber: 1.9 Consensus size: 755
14151258 TTTTCACAAT
* *
14151268 TTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
1 TTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACT
* *
14151333 TGGTAGACGTATCCTTCTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAACCTCGAAGTGT
66 TGGTAGACGTATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
14151398 ACAAGATTTTGTGACCATTTGAATAAAGTGTCCCGACTTCAGACACTTTAATGGCTACTGGTAGC
131 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGC
*
14151463 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGC
196 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGC
* * *
14151528 GGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCC
261 GGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATATGCGCACACCCCCCTCGGCCC
* * * *
14151593 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCTAGCGATGCTCCGGTGATGGTGCCC
326 CCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGAAGGTGCCC
* *
14151658 TGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTC
391 TGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTAGATC
* *
14151723 CGGTTTGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTA
456 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTA
* ** * * *
14151788 AGTCAACCCACGAAACGAGCGTGCAGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
521 AGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAACCAGAGGGGCAGGATGCGCAAGCCAGA
* * * ***
14151853 GATCAATCGGATCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATC
586 GATCAATCGGATCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCATCAGTCCAATCTGATC
* * * * *
14151918 TTAGACTCAGAATGAACTTCGTATGCCTAAGCCGATCGATGAAACGAGCGGGCGGGCACTGCGCC
651 TTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCACTGCGCC
14151983 AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
716 AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
14152023 TTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGATGGACTTTTGGCCCCAAACT
1 TTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACT
* * *
14152088 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
66 TGGTAGACGT-ATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
14152153 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATGGCTACTGGCAG
130 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAG
*
14152217 CAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
195 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * *
14152282 GGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATATGCGCACACTCCCC-CGG-G
260 CGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATATGCGCACACCCCCCTCGGCC
* * * * * *
14152345 CCCCCGATCATCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGAAGGTGCC
325 CCCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGAAGGTGCC
* * * *
14152410 CTGGTGAAGAAAAATGTGGCACCAACACATGGCCGAGCCCAGCATGTGCTGCCGTAACCCTAGAT
390 CTGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTAGAT
*
14152475 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
455 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCT
* * **
14152540 AAGT-ATACCCACGAAACGAGGGTGCGGGTGCTCAGCCAACCAGAGGGGCAGGATGCGCAAGCCA
520 AAGTCA-ACCCACGAAACGAGCGTGCAGGCACTCAGCCAACCAGAGGGGCAGGATGCGCAAGCCA
*** * * * * *
14152604 GAGATTGGTCGGGTCCCTCTCTATGTGTTGCCGATCCTGCTACGGCAACCATCAGTCCAATCTGA
584 GAGATCAATCGGATCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCATCAGTCCAATCTGA
14152669 TCTTAGACT-ACGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
649 TCTTAGACTCA-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
14152727 TGGGCGGGTG
Statistics
Matches: 632, Mismatches: 69, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
752 2 0.00
753 330 0.52
754 3 0.00
755 212 0.34
756 85 0.13
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (755 bp):
TTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACT
TGGTAGACGTATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGC
GGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATATGCGCACACCCCCCTCGGCCC
CCCCGATCACCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGAAGGTGCCC
TGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTAGATC
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCCTA
AGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAACCAGAGGGGCAGGATGCGCAAGCCAGA
GATCAATCGGATCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCATCAGTCCAATCTGATC
TTAGACTCAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCACTGCGCC
AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
Found at i:14153419 original size:26 final size:26
Alignment explanation
Indices: 14153390--14153440 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14153380 GGTCTGATCT
* *
14153390 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGCGAATGAACTCCGTATGCA
14153416 TAGACTGCGAATGAACTCCGTATGC
1 TAGACTGCGAATGAACTCCGTATGC
14153441 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGCGAATGAACTCCGTATGCA
Found at i:14155309 original size:709 final size:709
Alignment explanation
Indices: 14153553--14155736 Score: 3428
Period size: 709 Copynumber: 3.1 Consensus size: 709
14153543 CTGCTACCGT
*
14153553 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
* * * * * * *
14153618 C-AA-GC-GGGCGGGCGGGCGGGCAGTACGTCGGCCAAAGAGACGAGATTCGCAAGCCGTGGTTC
66 CGAACGCGGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTGGATC
* * *
14153680 AATACGGCGGTAGGTGCGTTCAGGCACATCTTCATATTTTCTGCGTGCCAATGCCATTTTTATGG
131 AATACGGTGGTAGGTGCGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGG
14153745 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
*
14153810 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGATGGAG
260 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGAG
*
14153875 TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTAGC
325 TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGC
*
14153940 TAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14154005 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
14154070 TTTGTTGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
520 TTTGTTGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
14154135 CACCCCCCCTCGACCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
585 CA------C-C--CCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
* ** *
14154200 TCCGACGATGGTGCCCTGGTGGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTACT
641 TCCGACGATGGTGCCC-CGACGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCT
*
14154265 GTCTC
705 GCCTC
*
14154270 AACCCTCGGTCTGGTCCGATATTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
* * *
14154335 CGAACGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGTCGGGATGCGTAAGCCGTGGAT
66 CGAACGCG-GGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTGGAT
* *
14154400 CGATACGGTGGTAGGTGCGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
130 CAATACGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
14154465 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
*
14154530 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
260 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGAG
* * *
14154595 TTTTGGTCCCAAACTGGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACCAAACAATTCAGC
325 TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGC
* *
14154660 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATATACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
14154725 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
14154790 TTTGTTGAGGGATAGGGGCCAATATAAGGGCCGAGTACCAGCACCCATTGCACATCATGTGCGCA
520 TTTGTTGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
** * *
14154855 CA-CCCCCC-CGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT
585 CACCCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
14154918 GGTGCCCCGACAGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCTC
650 GGTGCCCCGAC-GAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCTC
* ** * *
14154979 AACCCTCAGTCTGGTTTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
* * *
14155044 CGAACGACGGGGCGGGCAGGCAGGCACTACGCCGGCCAAAGAGTTGGGATGCGCAAGTCGTGGAT
66 CGAACG-CGGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTGGAT
* * *
14155109 CAATACGTTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGG
130 CAATACGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
14155174 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTT
* * * * *
14155239 TCTATTTTTCACGATTTTTGAAAGTTTTTACGATTCGGGATTTTTTAAAATTTTTTTGGAAGGTG
260 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGAG
* * *
14155304 TTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAG
325 TTTTGG-TCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG
*
14155369 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
389 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
14155434 TAAGGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* * * * *
14155499 GTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCATCTATCGCACATCATGTGCG
519 GTTTGTTGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG
* * *
14155564 CACACCCCCCGGCTCGTCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGTGATGCTC
583 CACA-CCCCC--C-C-ACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
* * *
14155629 CGACGATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACATGC-CTGAGCCCAGCATGTGCT
643 CGACGATGGTGCCCCGACG-AGAAAAATACGA-CACCAACACATGCTC-GAGCCCAGCATGTGCT
*
14155692 GCCAC
705 GCCTC
* *
14155697 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
14155737 CGTAAGCTTA
Statistics
Matches: 1357, Mismatches: 92, Indels: 35
0.91 0.06 0.02
Matches are distributed among these distances:
708 1 0.00
709 410 0.30
710 197 0.15
711 48 0.04
712 1 0.00
713 4 0.00
715 1 0.00
716 1 0.00
717 67 0.05
718 138 0.10
719 1 0.00
720 408 0.30
721 80 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAA
CGAACGCGGGGCGGGCAGGCGGGCACTACGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTGGATC
AATACGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTAGGAAGGAGT
TTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
TTGTTGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC
ACCCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
GTGCCCCGACGAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCTC
Found at i:14156651 original size:25 final size:25
Alignment explanation
Indices: 14156611--14156661 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
14156601 CCGGTCCGAT
14156611 CTTAGACTGGAATGAAC-TCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
14156635 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACT-GGAATGAACTTCGTATG
14156661 C
1 C
14156662 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 8 0.32
25 9 0.36
26 8 0.32
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:14157537 original size:26 final size:26
Alignment explanation
Indices: 14157499--14157551 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14157489 CCGGTCCAAT
* *
14157499 CTTAGACTAGGAATGAAGTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14157525 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14157551 C
1 C
14157552 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14158363 original size:901 final size:899
Alignment explanation
Indices: 14154978--14158386 Score: 4695
Period size: 892 Copynumber: 3.8 Consensus size: 899
14154968 TGTGCTGCCT
* * *
14154978 CAACCCTCAGTCTGGTTTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ** *
14155043 ACGAACGACGGGGCGGGC-AGGCAGGCACTACGCCGGCCAAAGAGTTGGGATGCGCAAGTCGTGG
66 AC-AA-GACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
14155107 ATCAATACGTTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
14155172 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
14155237 TTTCTATTTTTCACGATTTTTGAAAGTTTTTACGATTCGGGATTTTTTAAAATTTTTTTGGAAGG
259 TTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
* *
14155302 TGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTC
324 AGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14155367 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14155432 TTTAAGGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * *
14155497 AGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCATCTATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * *
14155562 CGCACA-CCCCCCGGCTCGTCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGTGATG
583 CGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* *
14155626 CTCCGACGATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACATGC-CTGAGCCCAGCATGT
648 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGA-CACCAGCACATGCTC-GAGCCCAGCATGT
* * *
14155689 GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGG
711 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACT-CGTATGCTTAGACTGGG
* * * * *
14155754 AATGAACTCTGTAT-CGCTAAGTCAACCCATGAAACGAGCTTGCGGTCGCTCAGGCGGCCAGAGG
774 AATGAACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
14155818 GGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGCTTATCCTGCTACCG
838 GGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGC-GATCCTGCTACCG
* *
14155881 CAACCATCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
14155946 ACGAG-CGGGCAGGCGGGCGGGTGAGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGAAAGCA
66 ACAAGAC-GG--GGCGGGC--GTG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14156010 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14156075 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGATGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14156140 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTTAG
255 TCGTTTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
* * * *
14156205 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTTGTATGCACAAAATAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14156270 TTCAGCTAAAAACTTGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14156335 CACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
14156400 TCAAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCGGCACCCATCGCACATCAT
515 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
14156465 GTGCGTACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAGTCCCGTCAGCCAGGTTCTAC-GG
580 GTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGG
*
14156529 CGA---T--G-C--T--T----CGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
643 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCA
* * *
14156580 TGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTCGTATGCTTAGACTAG
708 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCGTATGCTTAGACTGG
* *
14156645 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGG
773 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** ** * *
14156710 GGC-GGCATGCATAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
838 GGCAGG-ATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTG-CGATCCTGCTACCG
* * *
14156773 CAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * **
14156838 ATGAACGGAC-GGGCGGACGGGTAGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCC
66 A-CAA--GACGGGGCGG--GCGT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14156902 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14156967 TTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGACAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14157032 TCATTTT-TATTTTTCAA-G------G------TTTGCGAG--C----TTTTTTAAAGTTTTTTT
255 TCGTTTTCTATTTTT-AATGATTTTTGAAACTTTTTGCG-GTTCGGGATTTTTTAAAATTTTTTT
*
14157077 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
318 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14157142 AATTCAGGTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
383 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14157207 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGT
448 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
14157272 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATC
513 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
14157337 TTGTGCGCACACTCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
578 ATGTGCGCACAC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
** * * *
14157402 ATGACGCTCCGACGATGGTGCCCCGACAAAGAAAAATAACG-CACCAGCACATGCTCGAGCCTAG
642 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-ACGACACCAGCACATGCTCGAGCCCAG
* * *
14157466 CATGTGCTGCCGCAACCTTCGGTCCGGTCCAATCTTAGACTAGGAATGAAGTCTGTATGCTTAGA
706 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTC-GTATGCTTAGA
* *
14157531 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCA
769 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
14157596 AAGGGGCAGGATGCGTAAGCCAGGGATTGGTTGGGTCCCCCTCTTCATGCTGTCGATCCTGCTTC
834 GAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTG-CGATCCTGCTAC
*
14157661 CA
898 CG
* * * *
14157663 CAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
1 CAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
14157727 AACAA-AC-GGGCGGGCG-GGCGGGCACTACGCCAGCCAGAGAGACAGGATGCGCAAGCCGTGGA
65 AACAAGACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
14157789 TCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14157854 GCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14157919 TTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
260 TTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* * * *
14157984 ATTTTGGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTTTTTGGCCTGCACAAAAAAATTCA
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCA
* *
14158049 GCTAAATACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
14158114 TTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
14158179 GGTTTGATGAGAGATAGGGGCCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
14158244 GCACACCCCCCCCGTCCCCCCAATCGCCAGAACCCCAAAT-CCGTCGGTCAGGTTCT-TCGGCGA
584 GCACA-CCCCCCCGGCCCCCCGATCGCCGGAACCCC-AATGCCGTCGGTCAGGTTCTCT-GGCGA
* * * * *
14158307 TGCTCTGGCGATGGTGCCACGACGAAGAAAAATGCGACACCAGCACATGTTCGAGCCCAGCATGT
646 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGT
14158372 GCTGCCGCAACCCTC
711 GCTGCCGCAACCCTC
14158387 AGTCTAGTCT
Statistics
Matches: 2215, Mismatches: 221, Indels: 142
0.86 0.09 0.06
Matches are distributed among these distances:
873 1 0.00
874 305 0.14
875 7 0.00
877 1 0.00
878 1 0.00
879 6 0.00
880 2 0.00
882 168 0.08
883 8 0.00
884 3 0.00
885 1 0.00
886 8 0.00
888 72 0.03
889 17 0.01
890 180 0.08
891 12 0.01
892 352 0.16
893 14 0.01
894 75 0.03
895 8 0.00
896 1 0.00
898 1 0.00
900 61 0.03
901 327 0.15
902 6 0.00
903 70 0.03
905 1 0.00
906 243 0.11
907 227 0.10
908 36 0.02
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACAAGACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
GCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGCGATCCTGCTACCG
Found at i:14158415 original size:901 final size:900
Alignment explanation
Indices: 14154978--14158426 Score: 4705
Period size: 901 Copynumber: 3.8 Consensus size: 900
14154968 TGTGCTGCCT
* * *
14154978 CAACCCTCAGTCTGGTTTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * ** *
14155043 ACGAACGACGGGGCGGGC-AGGCAGGCACTACGCCGGCCAAAGAGTTGGGATGCGCAAGTCGTGG
66 AC-AA-GACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
14155107 ATCAATACGTTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
14155172 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
14155237 TTTCTATTTTTCACGATTTTTGAAAGTTTTTACGATTCGGGATTTTTTAAAATTTTTTTGGAAGG
259 TTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGG
* *
14155302 TGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTC
324 AGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14155367 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14155432 TTTAAGGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * *
14155497 AGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCATCTATCGCACATCATGTG
518 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * *
14155562 CGCACA-CCCCCCGGCTCGTCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGTGATG
583 CGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* *
14155626 CTCCGACGATGGTGCCCCAACGAAGAAAAATGC-AGCACCAGCACATGC-CTGAGCCCAGCATGT
648 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGA-CACCAGCACATGCTC-GAGCCCAGCATGT
* * *
14155689 GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGG
711 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGG
* * * * *
14155754 AATGAACTCTGTAT-CGCTAAGTCAACCCATGAAACGAGCTTGCGGTCGCTCAGGCGGCCAGAGG
775 AATGAACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
14155818 GGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGCTTATCCTGCTACCG
839 GGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGC-GATCCTGCTACCG
* *
14155881 CAACCATCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
14155946 ACGAG-CGGGCAGGCGGGCGGGTGAGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGAAAGCA
66 ACAAGAC-GG--GGCGGGC--GTG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14156010 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14156075 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGATGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14156140 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTTAG
255 TCGTTTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGG
* * * *
14156205 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTTGTATGCACAAAATAA
320 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14156270 TTCAGCTAAAAACTTGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGA
385 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14156335 CACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
450 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
14156400 TCAAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCGGCACCCATCGCACATCAT
515 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
14156465 GTGCGTACACCCCCCCGACCCCCCCGATCGTCGGAACCTCAGTCCCGTCAGCCAGGTTCTAC-GG
580 GTGCGCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGG
*
14156529 CGA---T--G-C--T--T----CGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
643 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCA
* * *
14156580 TGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCGTATGCTTAGACTA
708 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTG
* *
14156644 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAG
773 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** ** * *
14156709 GGGC-GGCATGCATAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
838 GGGCAGG-ATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTG-CGATCCTGCTACCG
* * *
14156773 CAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * **
14156838 ATGAACGGAC-GGGCGGACGGGTAGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCC
66 A-CAA--GACGGGGCGG--GCGT-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14156902 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
125 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
14156967 TTCTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGACAAGACGAC
190 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14157032 TCATTTT-TATTTTTCAA-G------G------TTTGCGAG--C----TTTTTTAAAGTTTTTTT
255 TCGTTTTCTATTTTT-AATGATTTTTGAAACTTTTTGCG-GTTCGGGATTTTTTAAAATTTTTTT
*
14157077 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
318 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14157142 AATTCAGGTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
383 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14157207 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGT
448 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
14157272 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATC
513 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
14157337 TTGTGCGCACACTCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
578 ATGTGCGCACAC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
** * * *
14157402 ATGACGCTCCGACGATGGTGCCCCGACAAAGAAAAATAACG-CACCAGCACATGCTCGAGCCTAG
642 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-ACGACACCAGCACATGCTCGAGCCCAG
* * * *
14157466 CATGTGCTGCCGCAACCTTCGGTCCGGTCCAATCTTAGACTAGGAATGAAGTCTGTATGCTTAGA
706 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGA
* *
14157531 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCA
770 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
14157596 AAGGGGCAGGATGCGTAAGCCAGGGATTGGTTGGGTCCCCCTCTTCATGCTGTCGATCCTGCTTC
835 GAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTG-CGATCCTGCTAC
*
14157661 CA
899 CG
* * * *
14157663 CAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
1 CAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
14157727 AACAA-AC-GGGCGGGCG-GGCGGGCACTACGCCAGCCAGAGAGACAGGATGCGCAAGCCGTGGA
65 AACAAGACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
14157789 TCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14157854 GCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14157919 TTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
260 TTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* * * *
14157984 ATTTTGGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTTTTTGGCCTGCACAAAAAAATTCA
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCA
* *
14158049 GCTAAATACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
14158114 TTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
14158179 GGTTTGATGAGAGATAGGGGCCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
14158244 GCACACCCCCCCCGTCCCCCCAATCGCCAGAACCCCAAAT-CCGTCGGTCAGGTTCT-TCGGCGA
584 GCACA-CCCCCCCGGCCCCCCGATCGCCGGAACCCC-AATGCCGTCGGTCAGGTTCTCT-GGCGA
* * * * *
14158307 TGCTCTGGCGATGGTGCCACGACGAAGAAAAATGCGACACCAGCACATGTTCGAGCCCAGCATGT
646 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGT
* ** * * * *
14158372 GCTGCCGCAACCCTCAGTCTAGTCTGATCTTAAATTGGGAATGATCTCCGTATGC
711 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTATGC
14158427 CTAAGCCAAC
Statistics
Matches: 2244, Mismatches: 231, Indels: 144
0.86 0.09 0.05
Matches are distributed among these distances:
873 1 0.00
874 305 0.14
875 7 0.00
877 1 0.00
878 1 0.00
879 6 0.00
880 2 0.00
882 168 0.07
883 8 0.00
884 3 0.00
885 1 0.00
886 8 0.00
888 72 0.03
889 17 0.01
890 180 0.08
891 12 0.01
892 352 0.16
893 14 0.01
894 75 0.03
895 8 0.00
896 1 0.00
898 1 0.00
900 61 0.03
901 355 0.16
902 7 0.00
903 70 0.03
905 1 0.00
906 243 0.11
907 227 0.10
908 36 0.02
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACAAGACGGGGCGGGCGTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
TGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTTCGTGCTGCGATCCTGCTACCG
Found at i:14160019 original size:26 final size:26
Alignment explanation
Indices: 14159990--14160042 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14159980 CTGGTCCGAT
*
14159990 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14160016 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14160042 C
1 C
14160043 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14160841 original size:26 final size:26
Alignment explanation
Indices: 14160805--14160857 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14160795 CCTATCCTAT
*
14160805 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14160831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14160857 C
1 C
14160858 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14161086 original size:158 final size:158
Alignment explanation
Indices: 14160831--14161206 Score: 472
Period size: 158 Copynumber: 2.4 Consensus size: 158
14160821 ACTCTGTATG
* ** * *
14160831 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCGTACGTGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAATGAGCGTGTGGGTGCTCAGC
** *
14160896 CGGCCAGAGGGGCGGGATGCACAAGTCAGGGATCGGTCGGG-CACCCTT-TATGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATG-ACAAGTCAGGGATCGACCGGGTC-CCCTTCTATGTGCTACCAATC
* *
14160959 CTGCTGCCCCAACCCTC-GGTCTGGTCCGAT
129 CTGCTACCCCAACCCTCAGTTC-GGTCCGAT
* ** *
14160989 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAATGAGCGTGTGGGTGCTCAGC
* * *
14161054 CGGCCAGAGGGGTGGGAAATG-CAAGTCAGGGATCGACCGGGTCCCCTTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGG--ATGACAAGTCAGGGATCGACCGGGTCCCCTTCTATGTGCTACCAATC
* *
14161118 CTGCTACCGCAACCCTCAGTTCGGTTCGAT
129 CTGCTACCCCAACCCTCAGTTCGGTCCGAT
* * * *
14161148 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACAGACGAAATGAGCGGGTGGGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAATGAGCGTGTGGGTG
14161207 GCGGGTGGGT
Statistics
Matches: 188, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
158 94 0.50
159 88 0.47
160 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGAAATGAGCGTGTGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGACAAGTCAGGGATCGACCGGGTCCCCTTCTATGTGCTACCAATCCT
GCTACCCCAACCCTCAGTTCGGTCCGAT
Found at i:14161778 original size:26 final size:26
Alignment explanation
Indices: 14161731--14161783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14161721 CCAATCCGAT
*
14161731 CTTAGACTGGGAATCAACTCCCCATG
1 CTTAGACTGGGAATCAAATCCCCATG
* *
14161757 CTTAGACTGGGAATGAAATCCCTATG
1 CTTAGACTGGGAATCAAATCCCCATG
14161783 C
1 C
14161784 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAAATCCCCATG
Found at i:14162670 original size:26 final size:26
Alignment explanation
Indices: 14162634--14162686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14162624 CCTATCCTAT
*
14162634 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14162660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14162686 C
1 C
14162687 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14162916 original size:158 final size:160
Alignment explanation
Indices: 14162660--14163030 Score: 453
Period size: 158 Copynumber: 2.3 Consensus size: 160
14162650 ACTCTGTATG
* * *
14162660 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAAACGGAACGAGCGTACGTGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGC
* * *
14162725 CGGCCAGAGGGGCGGGATGCACAAGTCAGGGATCGGTCGGG-CACCCTTTATGTGCTGCCAATCC
65 CGACCAGAGGGACGGGATGCACAAGTCAGGGATCGGTCGGGTCACCCTTTACGTGCTGCCAATCC
*
14162789 TGCTGCCC-CAACCCTCGGTCC-GGTCCGAT
130 TGCTGCCCGCAACCCTCGATCCGGGTCCGAT
* * * * *
14162818 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGC
* * * * ** *
14162883 CGACCAGAGGGACGGGATGCGCAAG-CGGAGGATCGGTCGGGTCCCCCTTTGCGTGCTTTCTATC
65 CGACCAGAGGGACGGGATGCACAAGTCAG-GGATCGGTCGGGTCACCCTTTACGTGCTGCCAATC
* * *
14162947 CTGCTGCCCGCAACTCTTGATCCGGGGTCTGAT
129 CTGCTGCCCGCAACCCTCGATCC-GGGTCCGAT
* *
14162980 CTTAGACTGGAATGAACTCCGTATGGCCTAAGTGAACCGACGAAACGAGCG
1 CTTAGACTGGAATGAACTCCGTAT-GCCTAAGTCAACCAACGAAACGAGCG
14163031 GCAGACGGGC
Statistics
Matches: 181, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.01
158 90 0.50
159 25 0.14
160 10 0.06
161 16 0.09
162 38 0.21
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (160 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGCC
GACCAGAGGGACGGGATGCACAAGTCAGGGATCGGTCGGGTCACCCTTTACGTGCTGCCAATCCT
GCTGCCCGCAACCCTCGATCCGGGTCCGAT
Found at i:14163716 original size:26 final size:26
Alignment explanation
Indices: 14163680--14163732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14163670 CCGATCCGAT
*
14163680 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
14163706 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
14163732 C
1 C
14163733 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:14166197 original size:26 final size:26
Alignment explanation
Indices: 14166150--14166202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14166140 CCAATCCGAT
*
14166150 CTTAGACTGGGAATCAACTCCCCATG
1 CTTAGACTGGGAATCAAATCCCCATG
* *
14166176 CTTAGACTGGGAATGAAATCCCTATG
1 CTTAGACTGGGAATCAAATCCCCATG
14166202 C
1 C
14166203 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAAATCCCCATG
Found at i:14167133 original size:30 final size:28
Alignment explanation
Indices: 14167078--14167134 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
14167068 CTATCCTATC
*
14167078 TTAGACTGGGAATGAACCTCTGTATGCT
1 TTAGACTGGGAATGAACCCCTGTATGCT
14167106 TTAGACTGGGAATGAACTCCCCTGTATGC
1 TTAGACTGGGAATGAA--CCCCTGTATGC
14167135 CTTAAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 16 0.62
30 10 0.38
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (28 bp):
TTAGACTGGGAATGAACCCCTGTATGCT
Found at i:14168168 original size:26 final size:26
Alignment explanation
Indices: 14168132--14168184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14168122 CCGATCCGAT
*
14168132 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
14168158 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
14168184 C
1 C
14168185 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:14169288 original size:914 final size:888
Alignment explanation
Indices: 14167268--14169756 Score: 3415
Period size: 902 Copynumber: 2.8 Consensus size: 888
14167258 CCGGTCCGAT
* * *
14167268 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
14167333 CGGCCAGAGGGACGGGATGCGCAAGCGGAGGATCGGTCGGGTCCCCCTTTGCGTGCTTTCTATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
* * * ** **
14167398 TGCTGCCGCAACTCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAA
131 TGCTGCTGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14167463 CCGATGAAATG-AGCGGGCAAACGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGTATGCGCA
196 CTGATGAAATGAAGCGGGCAGACGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
14167527 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTTGCATGCCAATGC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACATGCCAATGC
* * * *
14167592 CATTTTTATCGCTTGCAAATTCATACAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * ** *
14167657 ACAACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
* * * * *
14167722 TTTGGAAGGAGTTTCGGCCCCAAACTCGGTAGACGTGATCCTGGGTATATTTGTTGGCATGCATA
454 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTGTTGGCATGCATA
* *
14167787 AAAAAATTCAGCTAAAAACTCAGAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
14167852 TTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
14167917 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCA
648 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCA
* * *
14167982 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGTAACCCCAATGCTGTCGGTCAGGTTCTC
713 CATCATGTGCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * *
14168047 TAGCGATGCTCCGACGAAGAAAAATGCGACACAAGCGCACGCTGGAGCCTAGCATGTGCTACTGC
778 TAGCGATGCTCCGACGAAGAAAAATGCGACACAAGCACACGCCCGAGCCCAGCATGTGCCACTGC
* * * *
14168112 AACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
843 AAACCTCGATCCGATCCGATATTAGAATGGGAATGAACTCCATATG
* * * ** *
14168158 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAGCCCACGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * *
14168223 CGGCCAGAGGGGCGGGATGTC-CAAGCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATG-CGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATC
* *
14168287 CTGCTG-TCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
130 CTGCTGCT-GCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
14168351 AACTGACGAAATGAACGGGCGGGCAGACGGGCTGGCGGGCACTACGCCGGCCAGAGAGATGGGAT
194 AACTGATGAAATGAA---GCGGGCAGACGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGAT
14168416 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
255 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
*
14168481 ATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
320 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
14168546 CAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAA
385 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAA
** * * *
14168611 TTTTTTTGAAAGGAGTTTTGGGTCCAAACTTGGGAGACGTGATCCTTGTTTTTTTATTGGCATGC
450 TTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
14168676 ATAAAAAAATTCGGCTAAAAACTCAAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
515 ATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
14168741 CATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
14168806 TGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATC
645 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAC
* *
14168871 GCACATCATGTGCACACACCCCCCGGCCCCCCCCGATTGTTGGAACCCCAATGCCG-CTGGTCAG
710 GCACATCATGTGCACACACCCCCCGG--CCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAG
* *
14168935 GTTCTCCGACGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACTAGCACCAGCACA
772 G-T-T----C--T-CT--AGCGATGCT--CC-GACGAAGAAAAATGC-G-AC-A-CA--AGCACA
* * * * * *
14169000 TGCCCGAGCCCAGCATGTGCCGCTGTAAACCTCGGTCC-AGTTCGATATTAGAATGGGAGTGAAC
817 CGCCCGAGCCCAGCATGTGCCACTGCAAACCTCGATCCGA-TCCGATATTAGAATGGGAATGAAC
* *
14169064 TTCGTATG
881 TCCATATG
* * *
14169072 CTTAGACCGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * *
14169137 TGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTTTCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
* * * * *
14169202 TACCGCTGCAACCCTCAATTTGGTCTGAACTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14169267 TTGATGAAACGAA-C-GG--G-C--G-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CTGATGAAATGAAGCGGGCAGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14169324 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
14169389 TTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14169454 GACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTGATGGTTCAGGATTTTTGAAAA-TTTT
391 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG-TGGTTCGGGATTTTTTAAAATTTTT
* * * *
14169517 TTCAGAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGATGCTTGTATTTTTGTTGGCATGCACAA
455 TTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
*
14169582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14169647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGAGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14169712 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCA
649 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
14169757 TGCTCTGGTG
Statistics
Matches: 1407, Mismatches: 158, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
890 172 0.12
891 2 0.00
892 224 0.16
893 169 0.12
894 122 0.09
895 1 0.00
896 1 0.00
900 1 0.00
901 12 0.01
902 429 0.30
903 2 0.00
904 1 0.00
905 7 0.00
906 1 0.00
907 3 0.00
908 15 0.01
909 3 0.00
910 3 0.00
911 1 0.00
912 2 0.00
913 2 0.00
914 233 0.17
915 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
TGCTGCTGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGATGAAATGAAGCGGGCAGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACAT
CATGTGCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTAG
CGATGCTCCGACGAAGAAAAATGCGACACAAGCACACGCCCGAGCCCAGCATGTGCCACTGCAAA
CCTCGATCCGATCCGATATTAGAATGGGAATGAACTCCATATG
Found at i:14170649 original size:26 final size:26
Alignment explanation
Indices: 14170602--14170654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14170592 CCAATCCGAT
*
14170602 CTTAGACTGGGAATCAACTCCCCATG
1 CTTAGACTGGGAATCAAATCCCCATG
* *
14170628 CTTAGACTGGGAATGAAATCCCTATG
1 CTTAGACTGGGAATCAAATCCCCATG
14170654 C
1 C
14170655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAAATCCCCATG
Found at i:14171530 original size:26 final size:26
Alignment explanation
Indices: 14171501--14171553 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14171491 CTGGTCCGGT
14171501 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14171527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14171553 C
1 C
14171554 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14171851 original size:26 final size:26
Alignment explanation
Indices: 14171815--14171865 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14171805 CTGATCAAAT
14171815 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
14171841 CTTAGTCTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14171866 GCCTAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14172696 original size:26 final size:26
Alignment explanation
Indices: 14172667--14172719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14172657 CCGATTCGAT
*
14172667 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14172693 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14172719 C
1 C
14172720 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14173612 original size:866 final size:859
Alignment explanation
Indices: 14171835--14174320 Score: 3097
Period size: 866 Copynumber: 2.9 Consensus size: 859
14171825 GAATGAACTC
* * * * *
14171835 CGTATACTTAGTCTGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGTG
1 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGTG
* * * *
14171900 CTCAGCTG-CCAAGAGGGGTGGGATGCGCAAGTC-GGG---GAT----T-----T-TGCGTGCTA
66 CTCAGCCGACC-AGAGGGGCGGGATGCACAAGCCAGGGATCGATCGAGTCCCCCTCTGCGTGCTA
* * *** * * * *
14171950 CTGATCTTGCTGCCGCAACCCTCGGT-TCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
130 CCGATCCTGCTATAGCAACCCCCGGTCT-GGTCTGATCTTAGACTAGGAATGAACTCTGTATGCC
* * * ** *
14172014 TAAGCCAACCGATGAAACGAGCGGGCGGGTGAGCAAGCGGGTACTACGTCGGCCAGAGAGACGGG
194 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * ** * * * *
14172079 ATGCACAAGCTATGGATCGATAAGGTGGTAGGTGAGCTTAGGCATATCTTCATATTTCTACTTGC
259 ATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
*
14172144 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCAT
324 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * *
14172209 GGCAAGACGACTCATTTTATATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTAAA
389 GGCAAGATGACTCGTTTTCTATTTTTCA-TATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAA
* **
14172274 AATTTTTTCGGAAGGGGTTTTGGCCATAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
452 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* *
14172339 GCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
517 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
14172404 CCCATTTCAGACACTTTAATGGCTACTT-GTAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGG
582 CCCATTTCAGACACTTTAATGGCTA-TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
14172468 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCC
646 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCC
* **
14172533 ATCGCACATCATGTGCGCACACCCCCGCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGT
711 ATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCAAGT
* **** * * * ** * * *
14172598 CAGGTTCTTCGACGATCAACACATGCCCGAGCCCAGCATGTACTGTCGCAGCCCTCAGTCCGATT
774 CAGGTTCTTCGACGATCAACACAAGAAAAAACACACCATACACTGCCGCAGCCCGCAGTCCGATG
* * *
14172663 CGATCTTAGACTGGGAATGAACTT
839 CAACCTCAGACTGGG-AT--ACTT
* *
14172687 CGTATGCTTATACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGTG
1 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGTG
** * ** ** *
14172752 CTCAGGTGGCCAGAGTTGCGGGATGTGCAAGCCAGGGATCGA-CTGGGTCCCCCTCTGCGTGCTA
66 CTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATC-GAGTCCCCCTCTGCGTGCTA
* * *
14172816 CCGATCCTGCTATAGCAACCCCCGGTCTGGTCTGATCTTAGACTAGAAATGAACTCTATATGGCT
130 CCGATCCTGCTATAGCAACCCCCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCT
* * * * *
14172881 AAGCCAACCAAGGAAATGAGCGGGCGGGGGGGCGGGCGGGCACT-CTATCGGCCAGAGAGACGGG
195 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC-GTCGGCCAGAGAGACGGG
*
14172945 ATGTGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
259 ATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
* *
14173010 CAATGCCATTTTTATGGCTTGTATATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCAT
324 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
14173075 GGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGATTCAGGATTTTTTAA
389 GGCAAGATGACTCGTTTTCTATTTTTCAT-ATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAA
* * * *
14173140 AATTTTTTCGAAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTACTTTTGTTGGCAT
452 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
*
14173205 GCATAAAAAAATTCAGCTAAAAACTCGATA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
517 GCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
14173269 CCCCAATCCAGGCACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
581 CCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* ** *
14173334 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCC
646 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCC
* * ** *
14173399 ATCACACACCATGTGCGTGCACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCAAGTTA
711 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCAAGTCA
* * **
14173464 GGTTCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGACACCA-ACACATGCCGCAGCCCAGCA
776 GGTTCT-T--CGACGAT-CAAC-AC-AAGAAAAA-AC-ACACCATACAC-TGCCGCAGCCC-GCA
* * *
14173528 TGTGCTACTGCAACCCTCAGTCT-GG-T-C-T
831 -GTCCGA-TGCAA-CCTCAGACTGGGATACTT
* * * *
14173556 -G-AT-CTTAGATTGGTAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTG
1 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGTG
* * * *
14173618 CTCAGCCGACCAGAGGGGTGGGATGCACAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGTTGC
66 CTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGAGTCCCCCTCTGCGTGCTAC
* * ** *
14173683 CGATCCTGCTGTAGCAACCCTCGGTCTGGTCCAATCTTAGA-TAGCGAATCAACT-TCGTATGCC
131 CGATCCTGCTATAGCAACCCCCGGTCTGGTCTGATCTTAGACTAG-GAATGAACTCT-GTATGCC
** * *
14173746 TAAGCCAACCGACGAAACGAATGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGTCGGG
194 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * *
14173811 ATGCGCTAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
259 ATGCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
*
14173876 CAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
324 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
14173941 GGCAAGATGACTCGTTTTCTATTTCTCACTATTTTTGAAACTTTTTATGGGTCGGGATTTTTTAA
389 GGCAAGATGACTCGTTTTCTATTTTTCA-TATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAA
* *
14174006 AATTTTTTCGGAAGGATTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCAT
452 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
*
14174071 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAAAGTGTC
517 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
14174136 CCTATTTCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGG
582 CCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* **
14174201 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAAGTAGCACCCA
647 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCA
* ** * * *
14174266 TCGCACATCATGTGCGCACACCCCCCAGCCCCTTCGATCATCGAAACCCTAATGC
712 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
14174321 TGTCGGTCAG
Statistics
Matches: 1411, Mismatches: 182, Indels: 68
0.85 0.11 0.04
Matches are distributed among these distances:
852 84 0.06
853 5 0.00
856 2 0.00
860 1 0.00
864 42 0.03
865 14 0.01
866 1205 0.85
867 13 0.01
868 3 0.00
869 3 0.00
870 4 0.00
871 3 0.00
872 14 0.01
873 3 0.00
874 4 0.00
875 5 0.00
876 6 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (859 bp):
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTGCGGGTG
CTCAGCCGACCAGAGGGGCGGGATGCACAAGCCAGGGATCGATCGAGTCCCCCTCTGCGTGCTAC
CGATCCTGCTATAGCAACCCCCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTA
AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
GCGCAAGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGATGACTCGTTTTCTATTTTTCATATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCAAGTCAGGTTC
TTCGACGATCAACACAAGAAAAAACACACCATACACTGCCGCAGCCCGCAGTCCGATGCAACCTC
AGACTGGGATACTT
Found at i:14176860 original size:26 final size:26
Alignment explanation
Indices: 14176831--14176880 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14176821 GTTCGATCTT
14176831 AGACTGGGAATGAACTCCATATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
*
14176857 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
14176881 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:14179409 original size:895 final size:890
Alignment explanation
Indices: 14174663--14179882 Score: 6320
Period size: 895 Copynumber: 5.9 Consensus size: 890
14174653 CAACCAACGA
* * *
14174663 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCA
1 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
* *
14174728 TTTCAGACACTTTAATGGCTACTGCCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
66 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
14174793 TGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGC
131 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
14174858 ACATCATGTGCGCACACCACCCCGGCCCCCTCGATCGTCGAAACCCCAATGTCGTCGGTCAAGTT
196 ACATCATGTGCGCACACC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * * *
14174923 CTCTGATGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGC
259 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGC
* * * *
14174988 CCAGCATGTGCTGTCGTAACCCTCGGTCCGATCCGATC-TAGGACTGGGAATGAACTCCATATGC
324 CCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTA-GACTGGGAATGAACTCCGTATGC
* * * * * * *
14175052 TTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTGTGGATTCTCAG-T
388 TTAGACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT
** * * * * * *
14175116 CGGTTAGAGGGGCAGGCTGCACAAGCCGGGGATCGGCCGGGTCCCCTTCTGCATGCTACCGATCC
452 -GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-GCGATCC
* * *
14175181 TACTGCCACAACCCTCGCTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAA
515 TACTGCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14175245 CCGACGAAACGA----GCGGACGGG--CA-G--G---TG-G-G-CGGGCACTACGC-CGAC-TAG
580 CCGACAAAACGAGCGGGCGGGCGGGCACACGCCGACCAGAGAGACGGG-A-TGCGCAAGCCATGG
** * *
14175293 AGAGACGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
643 ATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
14175358 GCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAACACGACTCATT
708 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14175423 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
773 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * *
14175488 TTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCAAGCAT
838 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCAAGCAC
* *
14175541 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGCCCATTTGAAAAAAGTGTCCCCA
1 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
*
14175606 TTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
66 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
14175671 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCATGTACCAGCACCCATCGC
131 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * * *
14175736 ACATCATGTAAGCACACCCCCCCAGCCCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTA
196 ACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
14175801 TCCGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAACACATG-ATCGAGC
260 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCT-GAGC
* * * *
14175865 CCAACATGTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGATCTCCATATGCT
324 CCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
14175930 TAGACTGGGAATGAACTCTGTATGCCTCAGTCAACTCATGAAACGAGCGTACGGGTGCTCAGCCG
389 TAGACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTG
* * *
14175995 G-CAGAGGGGCGGGGCGTTCAGCCGGCCAGAGGTGCGGGATGTACAAGCCAGGGATTGATCGGGT
453 GCCAGA------GGG-G-T-A----G---GA--TGC-------ACAAGCCGGGGATCGGTCGGGT
* ** * * * *
14176059 CCTCCTCTATGTGCTGCCCATCCTATTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGAA
493 CCCCCTCTGCGTGCTG-CGATCCTACTGCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAA
* * * * **
14176124 TGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGTGGGCGGGCGAGCAGGCGAGCACTACGTC
557 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC--G--GGC-A-CACGCCG--
* * * *
14176189 AGCCAGAGACACGGGATGCGCAAGCCGTGGATCAATAGGGTAGTAGGTGGGTTTAGGCACATCTT
614 A-CCAGAGAGACGGGATGCGCAAGCCATGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
14176254 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTT
677 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
14176319 CACGTGAAGTTTCATGGCAAGACGACTCGGTTTCTATTTTTCACGATTTTTGAATCTTTTTACGG
742 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* *
14176384 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTG
807 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTT
* *
14176449 TATTTTTGTTGGTATGCAC
872 TATTTTTGTTGGCAAGCAC
* * *
14176468 AAAAAAATTCAGCTAAAAA-TTCGAAGTGCACAAGATTTT-ATGACCATTTGAATAAAGTTTCCC
1 AAAAAAATTCAGCTAAAAACTT-GAAGTGTACAAGATTTTGA-GACCATTTGAAAAAAGTGTCCC
* * *
14176531 CATTTCAAACACATTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
64 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
14176596 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCATGTACCAGCACCCATC
129 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
14176661 GCACATCATGTGCGTACACCCCCCGCCCCCCCGATCGTCGGAATCCCAATGCCG-CTGGTTAGGT
194 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGT
* * * * *
14176725 TCTCTGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAACACATGCCCGAG
258 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAG
** * * *
14176790 CCCAACATGTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCATATGC
323 CCCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
14176855 TCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGAGGTTGCTCAGCT
388 TTAGACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT
* * * * *
14176920 GGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGG-CTGGGTCCCCCTCTGCATGCTGCCAATCC
452 GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTG-CGATCC
* * *
14176984 TGCTGCCGCAACCCTCACTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
515 TACTGCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * ** * * *
14177049 CTGACGGAACGAGCGGGCAGGTGGG----CG--G-GC-G-G-G-C--TCTACGTC-GGCTA-GAG
580 CCGACAAAACGAGCGGGCGGGCGGGCACACGCCGACCAGAGAGACGGGATGCG-CAAGCCATG-G
*
14177099 A--GATGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGCATGCCAATGCCATTTTTATG
643 ATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
14177162 GCTTGTAAATTCATACAATGGTCCCTCAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
708 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
14177227 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTTGGATTTTTTTAAATTTTTTCGGAAGGA
773 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * *
14177292 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTTTTTTTTTTTAGCAAGCAC
838 GTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTTTATTTTTGTTGGCAAGCAC
*
14177346 AAAAAAATTCAGATAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
1 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
* *
14177411 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGAGGGTG
66 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
14177476 TGAGTTCTCAAGGTTTGGTGACGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCTATCGC
131 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
14177541 ACATTATGTGCGCACA----CC--CCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT
196 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * *
14177600 CAGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCT
261 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCC
* *
14177665 AGCATGTGCTGCCGCAACCCT---T---G---G-TC-----C-------G-A-TCCG-AT-CTTA
326 AACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
14177704 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTGCGGGTGCTCAGCCGGC
391 GACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGC
* ** * *
14177769 TAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACT
455 CAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG-CGATCCTACT
* * * *
14177834 GCCGAAACCCTCACTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
519 GCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * ** **
14177899 CGAAACGAGCGGACGGGCGGG--C-GGGC-A-C-TA-CG-CCTG-TTAG-AA---A--GA-C---
584 CAAAACGAGCGGGCGGGCGGGCACACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
* * *
14177945 GGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTAATGGCTTGG
649 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
14178010 AAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTAT
714 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
14178075 TTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTG
779 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
14178140 GCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCAAGCAT
844 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCAAGCAC
* * * * *
14178187 AAAAAAATTCAGTTGAAAACTCGAAGTGTACAAGATTTTGAGCCCATTTGAAAAAAGTGTCCCTA
1 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
* *
14178252 TTTCAGACACTTTAATGGCTACT-GCTAGCAAACCTGTAGAATCTCAAATGCTCATTAAGGGGGT
66 TTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14178316 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCCTCG
130 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14178381 CACATCATGTGTGCACACCCCCCCGGCCACCTCGATCGTCGAAACCCCAATTCCGTCGGTCAGGT
195 CACATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * *
14178446 TCTCCGACGATGCTCCGACGATGGTGCCCCGACTAAGAAAAATACGACACCAACACATGCTTGAG
258 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAG
14178511 CCCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
323 CCCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
**
14178576 TTAGACTGGGAATGAACTTTGTATGCCTCAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT
388 TTAGACTGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT
* *
14178641 GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGTGAATCCT
452 GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCG-ATCCT
* ** * * *
14178706 GCTGCCATAACCCTCACTCTGGTCTGATCTAAGACT-GGAATGAACTCCGTAAGCCTAAGCCGAC
516 ACTGCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
14178770 CGACAAAACGAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGAT
581 CGACAAAACGAGCGGGCGGGCGGGCAC-ACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGAT
* *
14178835 CGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGG
645 CGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
14178900 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
709 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** ** *
14178965 TCTATTTTTCACGATTTTCAAAACTTTTTACGAG-TCAAGATTTTTTAAAATTTTTTCAGAAGAA
774 TCTATTTTTCATGATTTTTGAAACTTTTTACG-GTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* * * *
14179029 GTTTTGGCCCCAAACTTGGTAGACGTTATACTTTTATTTTTTTTGGCATGCAC
838 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCAAGCAC
** * *
14179082 AAAAAAAATTTTGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCC
1 -AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCC
* * **
14179147 ATTTC-GAACACATTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAAAGGG
65 ATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14179211 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATC
129 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
14179276 ACACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGT
194 GCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * *
14179341 TCTCCGGCGATGCTCCGACGATGGTGCCCCAATGAAGAAAAATGCAGCACCAACACATGCCTGAG
258 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAG
* * *
14179406 CCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
323 CCCAACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
14179471 TTAGACTGGGAATGAATTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG-T
388 TTAGACTGGGAATGAACTCCGTATGCCTA-GTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCT
* * * * *
14179535 CGACCAGAGGGGTGGGATGCACATGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCC
452 -GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-GCGATCC
* * ** * *
14179600 TACTACTGCAACCCTCGGT-TCAGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
515 TACTGCCGCAACCCTCACTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14179664 ACTGACAAAACGAGCGAGCGGGCGGGCGGGCACCACACTGACCAGAAAGACGGGATGCGCAAGCC
579 ACCGAC-AAA--A-CGAGCGGGCGGGCGGGCA-CACGCCGACCAGAGAGACGGGATGCGCAAGCC
* * * * *
14179729 GTGGATCGATGGGGAGGTAGGTGGGTTTTGGCACTTCTTCATATTTCTCCATGCCAATGCCATTT
639 ATGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
14179794 TTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
703 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
14179859 TCGTTTTTTATTTTTCATGATTTT
768 TCGTTTTCTATTTTTCATGATTTT
14179883 CAAAACCTTT
Statistics
Matches: 3765, Mismatches: 424, Indels: 284
0.84 0.09 0.06
Matches are distributed among these distances:
840 2 0.00
841 209 0.06
842 206 0.05
844 2 0.00
846 200 0.05
847 4 0.00
848 6 0.00
849 115 0.03
850 3 0.00
852 1 0.00
855 1 0.00
857 1 0.00
858 1 0.00
859 2 0.00
862 2 0.00
863 1 0.00
864 1 0.00
866 1 0.00
869 1 0.00
871 1 0.00
872 113 0.03
873 5 0.00
874 51 0.01
875 145 0.04
876 4 0.00
877 400 0.11
878 417 0.11
879 7 0.00
880 8 0.00
881 2 0.00
882 5 0.00
883 3 0.00
884 3 0.00
885 4 0.00
886 1 0.00
888 1 0.00
889 1 0.00
890 3 0.00
891 1 0.00
892 2 0.00
894 6 0.00
895 513 0.14
896 223 0.06
897 5 0.00
898 2 0.00
899 1 0.00
900 189 0.05
901 51 0.01
902 161 0.04
906 5 0.00
908 1 0.00
909 3 0.00
910 2 0.00
911 2 0.00
914 3 0.00
917 1 0.00
918 1 0.00
920 1 0.00
921 3 0.00
923 1 0.00
924 5 0.00
925 4 0.00
926 228 0.06
927 418 0.11
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCC
AACATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCC
AGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCGATCCTACTGC
CGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACA
AAACGAGCGGGCGGGCGGGCACACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCAAGCAC
Found at i:14179473 original size:26 final size:26
Alignment explanation
Indices: 14179444--14179496 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14179434 CTGGTCCGAT
14179444 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14179470 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14179496 C
1 C
14179497 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14180092 original size:219 final size:218
Alignment explanation
Indices: 14179705--14180101 Score: 659
Period size: 219 Copynumber: 1.8 Consensus size: 218
14179695 ACCACACTGA
* * * *
14179705 CCAGAAAGACGGGATGCGCAAGCCGTGGATCGATGGGGAGGTAGGTGGGTTTTGGCACTTCTTCA
1 CCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTCA
*
14179770 TATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
66 TATTTCACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
* * *
14179835 CGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAACCTTTTGTTGTT
131 CGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTTCAAAACCTTTTGTTGTT
14179900 CGAACGGGCGGGCACTGCGGTGG
196 CGAACGGGCGGGCACTGCGGTGG
* *
14179923 CCAGAGAGAACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 CCAGAAAG-ACGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTC
* * * *
14179988 ATATTTCAGCGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
65 ATATTTCACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTC
14180053 ACGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTT
130 ACGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTT
14180102 TGAAACTTTT
Statistics
Matches: 164, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
218 7 0.04
219 157 0.96
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (218 bp):
CCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTTCAAAACCTTTTGTTGTT
CGAACGGGCGGGCACTGCGGTGG
Found at i:14180591 original size:26 final size:26
Alignment explanation
Indices: 14180553--14180602 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14180543 CTATTCGGAT
* *
14180553 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTAGGAACGAACTCCGTACG
*
14180579 CTTAGACTAGGAACGAACTTCGTA
1 CTTAGACTAGGAACGAACTCCGTA
14180603 TGCCTAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTACG
Found at i:14181012 original size:26 final size:26
Alignment explanation
Indices: 14180976--14181028 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14180966 CTGAACCGAT
*
14180976 CTTAGATTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
**
14181002 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
14181028 C
1 C
14181029 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:14181468 original size:25 final size:26
Alignment explanation
Indices: 14181412--14181468 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
14181402 TATTTTTCAT
***
14181412 GATTTTTGAAACTTTTTTCGGTTTGA
1 GATTTTTGAAACTTTTTTCGGAAGGA
*
14181438 GATTTTTTAAACTTTTTTCGGAAGGA
1 GATTTTTGAAACTTTTTTCGGAAGGA
14181464 G-TTTT
1 GATTTT
14181469 GGTCGTAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.21, C:0.07, G:0.19, T:0.53
Consensus pattern (26 bp):
GATTTTTGAAACTTTTTTCGGAAGGA
Found at i:14181904 original size:26 final size:24
Alignment explanation
Indices: 14181867--14181916 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
14181857 CCTCAGTTTG
14181867 ATCTGATCTTAGACTGGGAATGAA
1 ATCTGATCTTAGACTGGGAATGAA
14181891 ATCTGTATGCTTAGACTGGGAATGAA
1 ATCTG-AT-CTTAGACTGGGAATGAA
14181917 TTCCATATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (24 bp):
ATCTGATCTTAGACTGGGAATGAA
Found at i:14181925 original size:26 final size:26
Alignment explanation
Indices: 14181874--14181926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14181864 TTGATCTGAT
**
14181874 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCATATG
*
14181900 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
14181926 C
1 C
14181927 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14183365 original size:895 final size:896
Alignment explanation
Indices: 14180885--14185502 Score: 6092
Period size: 909 Copynumber: 5.1 Consensus size: 896
14180875 TATTTCTGCT
* * *
14180885 CTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** * *
14180950 TGCCGCAACCCTCGGTCTGAACCGATCTTAGATTGGGAATGAACCCCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
14181015 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAACCGACCAGAGTGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * ** * * * * *
14181080 -AGGATGTGCAAG-TCGGGATCAATAGGGTCCCCCTCTGTGTACTGCTGATCCTGCTACCGTAAC
196 GA-GATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
* * * * ** ** ** *
14181143 CCTC-ACTCCGGTCTGATC-TAGGACTGGGAATGAACTCCGTAAGTGTAAGCTGACCGATAAAAC
260 CCTCGGC-CCGGTCCGATCTTA-GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAT
* * * *
14181206 GAACGGGCGGGTGGACGGGCGACCACTACGCTGGCCAGAGAGACGGGATTCGCAAGTCGTGGATC
323 GAGCGGGC--G-GG-CGGG-G--CACTACGC-CGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
****
14181271 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCACATGCCAATGCCATTTTTATGGC
380 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
14181336 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
445 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
14181401 CTATTTTTCATGATTTTTGAAACTTTTTTCGGTTTGAGATTTTTTAAACTTTTTTCGGAAGGAGT
510 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* ** * *
14181466 TTTGGTCGTAAACTT-ATAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCT
575 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
14181529 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATTTTAGACACTTTA
640 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
14181594 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGT
705 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
14181659 TTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATTATGTGC-CA
770 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
14181723 CA-CCACCC-GCCCCCCCGATCATCGGAACCCTAATGCAGTCGGTCAGGTTCTTTGGCGATG
835 CACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
* * *
14181783 CTCCGACGATGGTGCCCCGATGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
14181848 TGTCGCAACCCTCAGTTTGA-TCTGATCTTAGACTGGGAATGAAATCTGTATGCTTAGACTGGGA
66 TGCCGCAACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * ** * * ** *
14181912 ATGAATTCCATATGCCTAAGTCAACCCACGAAACAAGCGTATGCGTGCTCAGCTAGCTAGAGGGG
130 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * *
14181977 CGGGATGCACAAGCTGGGGATCAGTCGGGTCCCCCTCTGCGTGCTACCAATCTTGATGCCGCAAC
195 CGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
* * * * * * **
14182042 CCTCAGTCTGGTCTGATCTTAGACCGAGAATGAACTCTGTATGTATAAGCCAACCGACGAAATGA
260 CCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA
* * * *
14182107 GCGGACGGGC-GGCCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
325 GCGGGCGGGCGGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
14182171 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
389 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
14182236 CGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTC
454 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
14182301 ACGATTTTGGAAACTTTTTGCGGTTTCGGATTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCGC
519 ACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
14182366 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCG
584 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
14182431 AAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTCCAGGCAATTTAATGGCTACT
649 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
14182496 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
714 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
14182561 GATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
779 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
14182626 GGCCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATG
844 GGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
* * * * *
14182679 CTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCATATGCCCGAGCCCAGGATATGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
14182744 TGCCGCAACCCTCGGTCTGGTTGGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
14182809 CGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* ** ** *
14182874 GAGATGCGCAAG-TCGGGGATCGGCCGGGTCCCCCTCTACGTGCTTTCGATCCTGCTGCTGCAAC
196 GAGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
* ** * ** * *
14182938 CCTTGGCCCGACCCAATCTTAGACAAGGAATGAACTCTGTATGCCTAAGGCAACTGACGAAATGA
260 CCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA
* **
14183003 GTGGGCGGGC-GGGCACTACGCCGCCAGAGAGACGAAATGCGCAAGCCGTGGATCGATAGGGTGG
325 GCGGGCGGGCGGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
14183067 TAGGTGGGTTTAGGCGCATCTTCATATTTCTGTGTGCGAATGCCATTTTTATGGATTGTAAATTC
390 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
14183132 ATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTACTTGTCA
455 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
**
14183197 CGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
520 CGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
14183262 AACTTGGTAGACGTGGTCCTTGCATGTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGA
585 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * *
14183327 AATGTACAATATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTG
650 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
14183392 GCAGCAAACCTATAAAATTTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTGAGGTTTGATGAGGG
715 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14183457 ATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAACGCACATCATGTGCGCACACCCCCCCG
780 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* ** * * * *
14183522 GCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCACGTTCTCCGGTGATG
845 GCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
** * * * * * *
14183574 CT-CGGCGATGGTTTCCCGGCAAAGAAAAATGCGGCACCAGCACTTGCCTGATCCCAGCATGTGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * ** * *
14183638 TGTCGTAACCCTTAGTCTGATTCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
*
14183703 TGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
14183768 -AGGATGTGCAAGCTGGGGATCGGTCGGGTCCCTCTTTGTGTGCTGTCGATCCTGCTGCCGCAAC
196 GA-GATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
* * * * *
14183832 CCTCGGCCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATGAAACGA
260 CCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA
*
14183897 GCGGGCGGGGGGGTGGGCGGCTGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGA
325 GCGGGC--------GGGC-G--GGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * ** * * *
14183962 TCGATAAGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATACCAATTTTATG
378 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
** * *
14184027 GCTTGTAAATTCATACAAAAGTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGATTCGTT
443 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * ** *
14184092 TTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
508 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA
** * *
14184157 CATTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAG
573 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
14184222 CTAAAAACTCGAAGTGTACAACATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTT
638 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
14184287 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCGAG
703 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
14184352 GTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
768 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
14184417 CAGACCCCCCCTCGG-CCCCCCGATCACCGGAACCCCAATGCTGCCAGTCAGGTTC-TCTGGCGA
833 CACA-CCCCCC-CGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GGCGA
14184480 TG
895 TG
* * * *
14184482 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
14184547 TGCCGCAGCCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
14184612 TGAACTCCGCAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAG-TCAGCCAGCCAGAGGGG
131 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGG
* * * * *
14184676 CGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCTTCTATGTGCTGCCGATCCTGCTACCGCAAC
195 CGAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAAC
* * *
14184741 CCTCGGTCCGGTCCGATCTTAG-CTTGGGAATGAACTCTGTATGCCTAAGCCAATCGACAAAATG
260 CCTCGGCCCGGTCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAT-
*
14184805 AGCAGACGGGCGAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
323 -G-AG-C--G-G-GCGGGC-GG-G-GCACTACG-CCGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ** *
14184870 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATTCCAATGCCATTTTTAT
377 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
** *
14184935 GGCTTGTAAATTCATACAATGGTCCCTTAAAACTTCACGTGAAGTTTCATGGCAACACGACTCGT
442 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * ** * *
14185000 TTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCGAAAATTTTTAAAATTTTTTCGGAAGT
507 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
** * * *
14185065 ACATTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTTTTGGCATGCACAAAAAGATTCG
572 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
14185130 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGACACT
637 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
14185195 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
702 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14185260 GGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
767 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
14185325 GCACACCCCCTCGACCCCCCCGATCACCGGAACCCTAATGCCGTCGGTCAGGTTC-TCTGGCAAT
832 GCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTC-GGCGAT
14185389 G
896 G
* * *
14185390 CTTCTGCGATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
14185455 TACCGCAACCCTTGGTCT-AGTCTGATCTTAGACTGGGAATGAACTCCG
66 TGCCGCAACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAACTCCG
14185503 CCTGCCTAAG
Statistics
Matches: 3252, Mismatches: 420, Indels: 86
0.87 0.11 0.02
Matches are distributed among these distances:
891 228 0.07
892 32 0.01
893 192 0.06
894 282 0.09
895 507 0.16
896 336 0.10
897 3 0.00
898 173 0.05
899 91 0.03
900 2 0.00
902 4 0.00
906 12 0.00
907 442 0.14
908 197 0.06
909 741 0.23
910 2 0.00
911 1 0.00
912 2 0.00
913 1 0.00
915 1 0.00
916 1 0.00
917 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GAGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACC
CTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAG
CGGGCGGGCGGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
CCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATG
Found at i:14183703 original size:26 final size:26
Alignment explanation
Indices: 14183664--14183716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14183654 CTGATTCGAT
*
14183664 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14183690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14183716 C
1 C
14183717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14186219 original size:26 final size:26
Alignment explanation
Indices: 14186190--14186242 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14186180 CTGGTCCGAT
* *
14186190 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14186216 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14186242 C
1 C
14186243 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14187891 original size:26 final size:26
Alignment explanation
Indices: 14187862--14187914 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14187852 CTGGTCCGAT
14187862 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14187888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14187914 C
1 C
14187915 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14188792 original size:26 final size:26
Alignment explanation
Indices: 14188763--14188815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14188753 CCAGTCCGAT
14188763 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14188789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14188815 C
1 C
14188816 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14189700 original size:26 final size:26
Alignment explanation
Indices: 14189664--14189714 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14189654 GGTCCGATCA
*
14189664 TAGATTGGGAATGAACT-TCGTATGCT
1 TAGACTGGGAATGAACTCT-GTATGCT
14189690 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
14189715 CTCAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:14190600 original size:26 final size:26
Alignment explanation
Indices: 14190564--14190616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14190554 CTGGTTTGAT
14190564 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14190590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14190616 C
1 C
14190617 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14190898 original size:902 final size:901
Alignment explanation
Indices: 14187211--14192575 Score: 7035
Period size: 902 Copynumber: 6.0 Consensus size: 901
14187201 TCGGTTTGGT
* * * *
14187211 CACTAC-TCTGGCCAGAGAGACGGGATGCACAAGCCTTGGATCGATAGGATGGTAGGTGGGTTTA
1 CACTACGTC-GGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
14187275 GGCACATCTTCATAGTTCTACATGCCAATGCCATTTTTGTGGCTTGTAAATTCAAACAATGGTCC
65 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
14187340 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCGAAT
130 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
14187405 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
195 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14187470 GTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGAT
260 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14187535 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
325 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14187600 TAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAA
390 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14187665 TATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCCCCGGCCCCCCCAAT
455 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGAT
* * * * * * * *
14187730 -CGCTAGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTGCTCCGACGA
518 CCCCGA-AACCCCAATGCCGACGATCAGGTTCTCCGGCGATGCTCCGG-GATGG-GCCCCGACGA
* * * *
14187794 AGAAAAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTACTGCCACAACCCTCGGTCTGGTCC
580 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCC
14187859 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
645 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * * **
14187924 CCCACGAAATGAGCATGTGGGCACTCAACCGACCAGA-GGGATGGGATGCTCAAGCTAGGGATC-
710 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG-TGAGATGCGCAAGCCGGGGATCG
** * * * * * * * * *
14187987 ACCCAAGTCCCTCTCTGCATGCTGCTGATGCTGCT-GTCGCAACCCTC-GATCCAGTCCGATCTT
774 A-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACT-GCAACCCTCAG-TTCGGTCTGATCTT
* * * *
14188050 AGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCAG
836 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCCGGGCAG
14188115 G
901 G
* * * * *
14188116 CACCACGTCGGCCAAAGAGACGGGATGGGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
1 CACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
14188181 GCATATCTTCATATTTCTGCGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCC
66 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
14188246 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCTCATTTT-TATTTTTCACAATTTTTGAAAC
131 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
*** * * * *
14188310 TTTTTGCGGTTTAAGATATTTTAAAATTTCTTCAGAAGGAGTTTCGGCCCCCAAACTTGGTACAC
196 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAGAC
* * *
14188375 GTGATCCTTGTACTTTTT-TTGGTATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAATA
260 GTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
14188439 TTTTGTGACTATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGTAGCAAACCT
324 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14188504 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCA
389 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
14188568 ATTTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG-CCCCCCGATC
454 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * * * * * * * *
14188632 GTCGAAACCCCAATTCTGCCGATCAAGTTCTCCGACGATGCTCTGGTGATGGTACCCCAACGAAG
519 CCCGAAACCCCAATGCCGACGATCAGGTTCTCCGGCGATGCTCCGG-GATGG-GCCCCGACGAAG
* * * * * *
14188697 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCATAACCCTTGGTCCAGTCCGA
582 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* * *
14188762 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATC
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** *
14188827 CACGAAACGAGCGTGC-GACGCTCAGCCGGCCAGACGGGCTG-TATGCGCAAGTTGGGGATCGGC
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGG-TGAGATGCGCAAGCCGGGGATCGAC
* * * * *
14188890 CAGGTCCCCCTCTGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTAT-GGTTTGATCTTAGAC
776 CGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGT-TCGGTCTGATCTTAGAC
* *
14188954 TGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGGCAGGCGGGCAG
840 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGC-GGC---CGG
14189019 GCAGG
897 GCAGG
* * *
14189024 CACTACGCCCGCCA-A-AAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTA
1 CACTACGTCGGCCAGAGAA-ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
14189087 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
65 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
14189152 CTTAAACCTTCACGTGAAGTTTCACGGCAAAATGACTCGTTTTCTATTTTTCATGATTTTCT-AA
130 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-TGAA
* * * * **
14189216 ACTTTTTGCGGTTCGGGATTTTTCAAAATTTTTTCGGAAGAAATTTTCACCCCAAACTTGGTAGA
194 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
** *
14189281 CACGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAA-TGCGAAGTGTACAAG
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CGAAGTGTACAAG
* *
14189344 ATTTTGTGACCATTTGAAAAAAGTGTCCACATTTTAGACACTTT-ATGGCTACTGGCAGCAAACC
323 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14189408 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCC
388 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14189473 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTCGGCCCCCTC
453 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC-CGGCCCCCCC
* * * *
14189538 GATTGCCCG-ATCCCCAATGCCGTCGATCAGGTTCTCCAGCGA---T---GG-T--GCCCCGACG
515 GA-TCCCCGAAACCCCAATGCCGACGATCAGGTTCTCCGGCGATGCTCCGGGATGGGCCCCGACG
* * *
14189593 AAGAAAAATGTGGCACCAGCACATGCTCGAGCACAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
579 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
* * * * *
14189658 CGATCATAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTCAGTCA
644 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
14189723 ACCCACGAAACGAGTGTGCGGGCGCTCAGCCAGCCAGAGTGGCT-AGATGCGCAAGTCGGGGATC
709 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-TGGGTGAGATGCGCAAGCCGGGGATC
* * * *
14189787 GATCGGGTCCCCCTCTGCGTGCTGTCTATCCTACTACTGCAACCCTCAGTTTGGTCTGATCTTAG
773 GACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTTCGGTCTGATCTTAG
* * * * *
14189852 ACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGGCGGGCGGG
838 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCCGGGCAGG
* * *
14189916 CACTACGTCGGCCAGAGAAACGGGGTGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
1 CACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14189981 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CC
66 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
14190045 TTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
131 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* *
14190110 TTTTTGCGGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
196 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14190174 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTATAAGA-T
261 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
14190238 TTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGGCACTTTAGTGGCCACTGGCAACAAACCTGT
326 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
14190303 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
391 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
14190368 ATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCACCCCGGCCCCCCCGAT
456 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCCGGCCCCCCCGAT
* * * * *
14190433 CCCCGAAACCCCAATGCCGATGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGGGCCTGACGAGG
518 CCCCGAAACCCCAATGCCGACGATCAGGTTCTCCGGCGATGCTCCGG-GATGGGCCCCGACGAAG
** * * * * * * **
14190498 AAAAATACGGCACCAGGACATGCCCGAGCACAACATGTGCTGCCGCAACCCTCAGTCTGGTTTGA
582 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* *
14190563 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACC
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
14190628 CACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGATGGGTGAGATGCGCAAGCCAGGGATCGACC
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGGTGAGATGCGCAAGCCGGGGATCGACC
*
14190693 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAATTCGGTCTGATCTTAGACTG
777 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTTCGGTCTGATCTTAGACTG
** * * *
14190758 GGAATGAACTTTGTATGCCTAAACCAATCAACGAAACGAGCGGGCGGGCGGCCGGGCAGG
842 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCCGGGCAGG
** * * *
14190818 CACTACG-CTGATCAGAGAAACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTA
1 CACTACGTC-GGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
14190882 GGCACATCTTCATATTTCTACGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
65 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * **
14190947 ATTAAGCCATCACATGAAGTTTCATGGCAAGACGTCTTGTTTTCTATTTTTCATGATTTTCAAAA
130 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
14191012 ATTTTAT--GGTTTGGGATTTTTTAAAA-TTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGA
195 CTTTT-TGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * ** *
14191074 TGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTCAGCTAAAAGGTCAAAGTGTACAAGA
259 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
14191139 TTTTGTGACCATTTGAAAAAAATGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCT
324 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14191204 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
389 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
14191269 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATC
454 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** * *
14191333 ATC-AGAACCCCAATGCC-ACCGACCAGGTTCT-C--CGATGAT---GG-T--GCCCCGACGAAG
519 CCCGA-AACCCCAATGCCGA-CGATCAGGTTCTCCGGCGATGCTCCGGGATGGGCCCCGACGAAG
* * *
14191387 AAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACCACCCTCGGTCTGGTCCGA
582 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * *
14191452 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATTAACTCTGTATGCCTTAGTCAACC
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
14191517 CACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGTCGGGGATCGATC
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGGTGAGATGCGCAAGCCGGGGATCGACC
* * * * *
14191582 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACTCTCAGTTCGGTCTGATCTTCGACTG
777 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTTCGGTCTGATCTTAGACTG
* * * * * * *
14191647 GGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAGACGGGTGGACGGGTATG
842 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCCGGGCAGG
* * *
14191707 CACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAG
1 CACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14191772 GCACATCTTCATATTTCTATGTGCCAATGCC-TTTTTATGGCTTGTAAATTCAAACAATGGTCCC
66 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14191836 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
131 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * *
14191901 TTTTTACGGTTCGAGACTTCTTAAAATTTTTTCAGAAGGAGTGTTGG-CCCAAATATTGGTAGAC
196 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA-CTTGGTAGAC
* * *
14191965 GTGATCCTCGTATTTTTGGTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
260 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * ** * * *
14192030 TTTCTAAAAATTTTAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACTTG
325 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14192095 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
390 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
14192160 TATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCGGCCCCCCCGATCA
455 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCC
* * * * * * *
14192225 CCAAAACCCCAATG-CTACCGGTCAGGTTCTCCAGTGAGGCTCCGGCGATGCTGCCCCGACGAAG
520 CCGAAACCCCAATGCCGA-CGATCAGGTTCTCCGGCGATGCTCCGG-GATG-GGCCCCGACGAAG
* * *
14192289 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGA
582 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * *
14192354 TCTTAGATTGGGAATGAACTCCGTATCCTTAGACTGGGAATTAACTCCATATGCCTAAGTCAACC
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14192419 CATGAAACGAGCGTGCGGGCGCTCAGCTGGCCA-AAGGG-CAGGATGCGTAAGCCGAGGATCGAC
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGGTGA-GATGCGCAAGCCGGGGATCGAC
* * ** * * *
14192482 CGGGTCCCCCT-TCACGTGCTGCTGATCCTA-TTGTCGCAACCTTCAGTCCGGTCAGATCTTAGA
776 CGGGTCCCCCTCT-GCGTGCTGCCGATCCTACTACT-GCAACCCTCAGTTCGGTCTGATCTTAGA
14192545 CTGGGAATGAACTCCGTATGCCTAAGCCAAC
839 CTGGGAATGAACTCCGTATGCCTAAGCCAAC
14192576 TGGTAGGTGG
Statistics
Matches: 3919, Mismatches: 462, Indels: 162
0.86 0.10 0.04
Matches are distributed among these distances:
887 1 0.00
888 91 0.02
889 391 0.10
890 255 0.07
891 137 0.03
892 305 0.08
893 107 0.03
894 6 0.00
895 3 0.00
896 13 0.00
897 1 0.00
898 6 0.00
899 175 0.04
900 256 0.07
901 301 0.08
902 682 0.17
903 229 0.06
904 149 0.04
905 349 0.09
906 168 0.04
907 179 0.05
908 76 0.02
909 3 0.00
910 33 0.01
911 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCC
CGAAACCCCAATGCCGACGATCAGGTTCTCCGGCGATGCTCCGGGATGGGCCCCGACGAAGAAAA
ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGGTGAGATGCGCAAGCCGGGGATCGACCGGGT
CCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCCGGGCAGG
Found at i:14191482 original size:26 final size:27
Alignment explanation
Indices: 14191453--14191510 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
14191443 CTGGTCCGAT
*
14191453 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTAGGAATGAACTCCGTATGC
* *
14191479 CTTAGACTAGGAATTAACTCTGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
14191506 CTTAG
1 CTTAG
14191511 TCAACCCACG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCGTATGC
Found at i:14194895 original size:26 final size:26
Alignment explanation
Indices: 14194844--14194896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194834 CTGGTTTGAT
**
14194844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14194870 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14194896 C
1 C
14194897 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14195387 original size:892 final size:891
Alignment explanation
Indices: 14193035--14196651 Score: 4491
Period size: 892 Copynumber: 4.1 Consensus size: 891
14193025 CCCCCCGGTG
* * * * **
14193035 ATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTGC-GGTCCAATCTTAGACTGGGAATGAA
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCGGT-CTGATCTGATCTTAGACTGGGAATGAA
* * * **
14193099 CTTCGTATCCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAAGCGG
64 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * *** * * *
14193164 GCCCTCAG-TCGGCTAGAGGGGCAAGATGCACAAGCCGGGGATCGGTCGGGTCCCTCTCTACGTG
129 GCGCTCAGCT-GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * *
14193228 CTGCTGATCCTGCTATCGCAACCCTCGGTCTGGTCTGACCTTGGACTGAGAATGAACTCTGTATG
193 CTGCTGATCCTGCT-TCACAACCCTCAGTCCGGTC-GATCTTAGACTGAGAATGAACTCAGTATG
* * * ** * * *
14193293 CCGAAGCCATCCGACGAAACGAGC--G-G-GCGGGCACTATGCTGGCCAGA-AAGACGAGATGCG
256 CCTAAGCCAACCGACGAAATGAGCGGGCGAGCGGGCGGTA-GCCGACCAGAGAA-ACGGGATGCG
* * * * *
14193353 CAAGCCGTGGATCGATTGAGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAATG
319 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATG
* *
14193418 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAA
384 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
14193483 GACGGCTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCAGGATCTTTTAAAATTT
449 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTC
* * * *
14193548 TTTCGTAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACA
514 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAA
* * *
14193613 AAAAAATTTAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
579 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14193678 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGT
644 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
14193743 GAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGAA
709 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14193808 CATCATGGGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCT
774 CATCATGTGCGCACACCCTCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * **
14193873 CCGACGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATACGGCACCAGCAC
839 TCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
*
14193926 ATGCCCGAGCCCAGCATGTGCT------A--TC-G-C--A----A---T-G-CT-CGAATGAACT
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGATCTGATCTTAGACTGGGAATGAACT
* * * * **
14193969 CCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCATGCGATC
66 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
14194034 GCTCAGCTGGCCAGAGGGGTGGGATGCGAAAGCCAGGGATCGGTCGGGTCCTCCTCTGCGTGCAG
131 GCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * ** * *
14194099 TTGATACTGTTGTTGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCA-TATGCC
196 CTGATCCTGCT-TCACAACCCTCAGTCCGGT-CGATCTTAGACTGAGAATGAACT-CAGTATGCC
* * * ** * ** * *
14194163 TAAGTCAACCGACGAAATGAGCGGGTGGGCGGGCACTACGTCGGGCAGAGAGACGGGATGCGAAA
258 TAAGCCAACCGACGAAATGAGCGGGCGAGCGGGCGGTA-GCCGACCAGAGAAACGGGATGCGCAA
* **
14194228 GCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCAT-TTTTCTTTATGCCAATGCC
322 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT-TACATGCCAATGCC
* *
14194292 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTGCATGGCAAGA
386 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
14194357 CGACTCATTTTCTATTTTTCACAATTTTTCAACCTTTTTTCGGTTTGGGATTTTTTAAAATTTTT
451 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTT
* * * * * * * * *
14194422 TCGAAAGGCGTTTCGACCCCAAACTTGGTAGATGTGATCCTTTTATTTTTTTTGGGATGCACAAA
516 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
14194487 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
581 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14194552 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGA
646 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14194617 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACA
711 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14194682 TCATGTGCGCACACCC-CCCGGCCCCTCGATCGACGGAACCCCAATGCCGCCAGTCAGGTTCTTC
776 TCATGTGCGCACACCCTCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC
* * *
14194746 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCAA
841 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * *
14194797 ATGCCCGAGCCCAGCATGTGCTGCTGCAACCTTCTGTCTGGTTTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TCGGTCTGATCTGATCTTAGACTGGGAATGAAC
* * *
14194862 TCTGTATGCTTAGACTGGGAGTGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
65 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * *
14194927 CGCTCAGCTGACCAAAGGGGTGGGATGCGCAAGCCGGGGATTGGTTGGGTCCCCCTCTACGTGCT
130 CGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
* *
14194992 GCTGATCCTGCTATCATAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCC
195 GCTGATCCTGCT-TCACAACCCTCAGTCCGGTC-GATCTTAGACTGAGAATGAACTCAGTATGCC
* * *
14195057 TAAGCCATCCGACGAAATGAGCGGGCGAACGGGCGGT-GCCGACCAGAGAAATGGGATGCGCAAG
258 TAAGCCAACCGACGAAATGAGCGGGCGAGCGGGCGGTAGCCGACCAGAGAAACGGGATGCGCAAG
* * *
14195121 CCGTGTATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
323 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCAT
* * *
14195186 TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGTAAGACG
388 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14195251 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATCTTTTAAAATTCTTTC
453 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTC
* * *
14195316 GGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCAGAAAAA
518 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
14195381 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
583 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** *
14195446 GACACTTTAATGGCTACCAGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGT
648 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14195511 TCTCGAGTTTTGATGAGCGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
713 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
14195576 ATGTGCG-ACACCCTCCGGGCCCCGCCGACCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
778 ATGTGCGCACACCCTCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCG
* * * ** *
14195640 GCTATGCTCCGGCGATGGTGCCCTGGTGAAAAAAAATGTGGCACCAGCAC
842 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* *
14195690 ATGCCCAAGCCCAGCATGTGCTGCCGTAAACCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCG-CAACCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
* * * *
14195755 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGTGTGTGGG
65 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
14195820 CCCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCTGGGG-TCAGCCGGGTCCCCCTCTGTGTGC
130 CGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCTCTGCGTGC
* * *
14195883 TGCGGATCCTGCTGCTACAACCCTCGGTCC-G--G-TC-----C--A-AATGAACTCAGTATGCC
194 TGCTGATCCTGCTTC-ACAACCCTCAGTCCGGTCGATCTTAGACTGAGAATGAACTCAGTATGCC
*
14195936 TAAGCCAACCGACCAAATGAGCGGGCAGGCTAGCGGGCGGGCGGGCACTACGCCGACCAGA-AAG
258 TAAGCCAACCGACGAAATGAGCGGGC--G--A----GCGGGC-GG---TA-GCCGACCAGAGAA-
* * * *
14196000 ACAGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTA
309 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTA
* * *
14196064 CGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGT
374 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** * ** **
14196129 TTCATGGCAAGACG-CATCGTTTTCTATTTTTCGGGATTTTTGAAACTTTTTGCAATTCAAGATT
439 TTCATGGCAAGACGAC-TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
*
14196193 TTTTAAAATTTCTTT-GGAAGGAGTTTTGG-ACCAAACTTGGTAGACGTGATCCTTGTATTTTTG
503 TTTTAAAA-TTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
14196256 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAA
567 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
14196321 AAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGGAAAATCTCAAATGCTC
632 AAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14196386 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAACTACC
696 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
14196451 AGCACCCATTGCACATCTTGTGTGCACACCACTCCTCGGCCCCCCCGATCGTCGGAACCCCAATG
761 AGCACCCATCGCACATCATGTGCGCACACC-CTCC-CGG-CCCCCCGATCGTCGGAACCCCAATG
** * * **
14196516 CCGCCGGTCACCTTC-TCTGATGATGCTCCGGCGATGGTGTCCC-AGCGAAGAAAAATGCAGCAC
823 CCGCCGGTCAGGTTCTTC-GACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGTGGCAC
14196579 CAGCAC
886 CAGCAC
* * * * *
14196585 ATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATTAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
14196650 TC
65 TC
14196652 TATATGCCTA
Statistics
Matches: 2367, Mismatches: 294, Indels: 126
0.85 0.11 0.05
Matches are distributed among these distances:
868 182 0.08
869 5 0.00
870 2 0.00
871 116 0.05
872 450 0.19
873 1 0.00
874 1 0.00
877 1 0.00
879 41 0.02
880 3 0.00
881 3 0.00
882 4 0.00
883 1 0.00
885 1 0.00
887 7 0.00
888 4 0.00
891 138 0.06
892 796 0.34
893 264 0.11
894 212 0.09
895 131 0.06
896 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGATCTGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
CTGATCCTGCTTCACAACCCTCAGTCCGGTCGATCTTAGACTGAGAATGAACTCAGTATGCCTAA
GCCAACCGACGAAATGAGCGGGCGAGCGGGCGGTAGCCGACCAGAGAAACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCTCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
Found at i:14195773 original size:26 final size:26
Alignment explanation
Indices: 14195737--14195789 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195727 CTGATCTGAT
14195737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14195763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14195789 C
1 C
14195790 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14198267 original size:25 final size:26
Alignment explanation
Indices: 14198221--14198272 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14198211 CCGGTTTGAT
14198221 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
14198247 CTTAGGCTGG-AATGAATTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14198272 C
1 C
14198273 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14198766 original size:890 final size:885
Alignment explanation
Indices: 14196611--14200911 Score: 5561
Period size: 887 Copynumber: 4.8 Consensus size: 885
14196601 TGTGCTGCCA
* * ** *
14196611 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATTAACTCTATATGCCTAAGCCAACCAACGGA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GA
* * *
14196676 AAGAGCGGGC--GGGCGGGCACTACACCGGCCAGAGAGACGGCATGCGCAAGCCATGGATCGATA
65 AAGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* ** * *
14196739 GGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGTGTACCAATGCCATTTTTATGGCTTGT
130 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGT
* * *
14196804 AAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCAAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
14196869 TTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
260 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
* *
14196934 GACCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAA
325 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
14196999 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATTG
390 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
14197064 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTA
455 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
14197129 TGTGGGATAGGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
520 TGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
14197194 CCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGATTGTCCGGCGATGGTGCC
584 CCCCCT-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCC
* * * * * *
14197259 CCGACGAAGAAACATGCGGCACCAACACATCCCCGAGCCCAGCATGTCCTGTCGCAACCCTTGGT
648 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT-TCTCAACCCTCGAT
* * * *
14197324 CTGGTCCGATCTGAGACTGGGAATGAACTCTGTATGCTTAGGCT-GGTAATGAACTCCGTATGCC
712 CCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTAGG-AATGAACTCCGTATGCC
* * * * * * * * *
14197388 TGAGTCAACCTACGAAACAAGCATGCAGTTGCTCAGTC-GGCCAGAGGGGCGGGTTCCCCAAGCT
775 TAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
14197452 AGGGATCGGCTGGGTCCCACTTTACGTGCTACCGATCCTGC-AGCTG
840 GGGGATCGGCCGGGTCCCCCTTTGCGGGCTGCCGATCCTGCTA-CCG
* * * * * * *
14197498 CAACCCTCTGTTCGGTCTGATCTTAGATTGGGAATGAACTACGTATGCCTAAGCAAACTGACGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * * *
14197563 ATGAGC-GG-ATGGGCGGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCATGAATCGATA
66 A-GAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
14197626 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGA
130 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGT
* *
14197691 AAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
195 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
**
14197756 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAAAGTTTTG
260 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
* * * *
14197821 GCCCCAAACTTGCTAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCATCTAAAA
325 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
14197886 ACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAAGTGT-CCCATTTCAGACACTTTAATA
390 ACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATG
14197950 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
454 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
14198015 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACAC
519 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* *
14198080 CCCCCCTTGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGGTGA
583 CCCCCC-TGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGC
* *
14198145 CCCGACGAAGAAACATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTATCTCAACCCTCAA
647 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT-TCTCAACCCTCGA
** * *
14198210 TCCGGTTTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGGCT-GGAATGAATTCCGTATGCC
711 TCCGGTCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCC
* *
14198274 TGAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CAGGCCAGAGGGGCGGGATGCGCAAGCC
775 TAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
14198338 GGGGATCGGCCAGGTCCCCCTTTGCGGGTTGCCGATCCTACTACCA
840 GGGGATCGGCCGGGTCCCCCTTTGCGGGCTGCCGATCCTGCTACCG
* * ** * *
14198384 CAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
14198449 ATGAGCGGGCGGGCGAGCGGGCACTATGCCTGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
66 A-GAGCGGGCGGG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
14198514 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTT
128 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTT
*
14198579 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
193 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
14198644 ATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
258 ATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* ** * * *
14198709 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGTAACGCACATAAAAATTTAGCTAA
323 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
14198774 AAAATCGAAGCGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
388 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
14198839 GGTTACTCGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
453 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
** *
14198904 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATAACCCATCGCACATCATATGCGCACA
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
14198969 CCCCCCCGGCCCCCCCAATTGTCGGAACCTCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCG
583 CCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG---T-------T-CTCCG
* * * * *
14199034 ACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGC-TGTC
637 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTTCTC
* * *
14199098 -A----C-A-----ACC---C-T---C--GAATGAACTCCGTACGCTTAGACTGGGAATGAACTC
702 AACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
* * ** * *
14199143 CGTATGCGTAAGTCAACTCACGAAATGAGCGTGCCGGTGCTCAGTCA-GCCAAAGGGGCGGGATG
767 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGGCCAGAGGGGCGGGATG
* * * * * *
14199207 TGCAAGCCGGGGATCGG-CGGGT-CCCCTTTGTGTGCTGTCGATCCTGCTGCTG
832 CGCAAGCCGGGGATCGGCCGGGTCCCCCTTTGCGGGCTGCCGATCCTGCTACCG
* * * * *
14199259 CAACCCTCGGTCCAATCTAATCTTAGATTGGGAATGAATTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
14199324 ACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 A-GAGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
14199389 TAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTATTATGGCTT
128 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTT
14199454 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
193 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
14199519 ACTTTTTCACGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTCGAAGGACTT
258 A-TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
*
14199584 TTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
322 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * *
14199649 AAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAA
387 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
14199714 TGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
452 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* ** * * *
14199779 TGATGAGGGATAGGGGGCCAATATAAAGAACAAGTTCCAGCACCCATTGCACATCATGCGCGCAC
517 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * * * * * *
14199844 AACCCCTTTCGG-CCCCCCGTTCGCCGAAAACCCAATGCTGCCGGTCAGGTTCTCCGACGATGCT
582 -ACCCCCCT-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA----
* * *
14199908 CCGGTGATGGTGCCCCGACGAAGAAAAATGCGACTCCAGA-ACATGCCTCGAGCCCAGCATGAGC
638 -C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCA-ACACATGCC-CGAGCCCAGCATGTGC
* * * *
14199972 TGTCGCAACCCTCGATCTGGTCCGATCATAGACTGGGAATGAACTCCCTATGCTTAGACTAGGAA
697 T-TCTCAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTAGGAA
* * * *
14200037 TGAACTCCGTATGCCTAAGTGAACCGACGAAACAAGTGTGCGGGTGCTCAG-CCGGCCAGAGGGG
760 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGGCCAGAGGGG
* * * ** * * * *
14200101 CAGGAATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTG-GGTGTTTCTGATCCTGCTACCG
825 C-GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTTTGCGG-GCTGCCGATCCTGCTACCG
* * * *
14200163 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGATTGAACTTCGTATGCCTCAGCCAACCGACG-A
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
14200227 A-A-C--GAGTGGTCGGGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAG
66 AGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
14200288 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTAGGGCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTA
*
14200353 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
14200418 TTTCACAATTTTTGAAAC-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
261 TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
*
14200482 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAA
326 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
14200547 CTCAAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
391 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
14200611 TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTC-ACGGTTTGG
456 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGA
*
14200675 TGAGGGATAGGGGGCCAATAGAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
520 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * **
14200738 CCCC-AG-CCCCCCGATAGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCTGGA
585 CCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA----C----
* * *
14200801 GATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGTA
639 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTTCT-CA
* * *
14200866 ACCCTCGGTCCAGTCCGATCTTAGACTAGGATTGAACTCCGTATGC
703 ACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
14200912 CTAAGCCAAC
Statistics
Matches: 2996, Mismatches: 341, Indels: 154
0.86 0.10 0.04
Matches are distributed among these distances:
866 2 0.00
867 2 0.00
869 3 0.00
874 2 0.00
875 259 0.09
876 317 0.11
877 149 0.05
878 20 0.01
879 1 0.00
880 2 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 2 0.00
886 223 0.07
887 678 0.23
888 128 0.04
889 17 0.01
890 460 0.15
891 5 0.00
892 35 0.01
893 122 0.04
894 124 0.04
895 20 0.01
896 174 0.06
897 4 0.00
898 3 0.00
899 59 0.02
900 2 0.00
901 80 0.03
902 18 0.01
903 8 0.00
904 74 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
AGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTTCTCAACCCTCGATCCGG
TCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACAAGCGTGCGGGTGCTCAGTCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGGCCGGGTCCCCCTTTGCGGGCTGCCGATCCTGCTACCG
Found at i:14200036 original size:26 final size:26
Alignment explanation
Indices: 14200000--14200050 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14199990 GGTCCGATCA
*
14200000 TAGACTGGGAATGAACTCCCTATGCT
1 TAGACTAGGAATGAACTCCCTATGCT
*
14200026 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCCTATGC
14200051 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCCTATGCT
Found at i:14201866 original size:718 final size:706
Alignment explanation
Indices: 14200162--14202346 Score: 2957
Period size: 712 Copynumber: 3.1 Consensus size: 706
14200152 TCCTGCTACC
* * *
14200162 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGATTGAACTTCGTATGCCTCAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
14200227 AACGA--GTGGT--C-G-GGCACTATGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGAT
66 AATGAGGGCGGTGGCGGAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATAGAT
* * *
14200286 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTTAGGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
*
14200351 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * *
14200416 TTTTTCACAATTTTTGAAAC-TTTTGCGGTTC-GAGATTTTTTAAAATTTTTTTGGAAGGATTTT
260 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTTGGAAGCAATTT
14200479 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAA
324 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-G-CAAAAAAATTCAGCTAA
*
14200544 AAACTC-AAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
387 AAACTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
14200607 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTTTGAGTTCTC-ACGG
451 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGA-GG
* *
14200670 TTTGGTGAGGGATAGGGGGCCAATAGAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
515 TTTGATGAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
14200735 C-ACCCCCAGCCCCCCGATAGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCTG
580 CAACCCCCAGCCCCCCGATAGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGA--CTCTG
14200799 GAGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCT
643 GAGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCT
* * *
14200863 GTAACCCTCGGTCCAGTCCGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGA
*
14200928 AATGAGCGGCGGGTGGGCGTGCAGGCACTACGCCGGCCAAAGAGACAGGATGCGCAAGCCGTGGA
66 AATGAG-GGC-GGT-GGCG-G-AGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
*
14200993 TAGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
126 TAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* *
14201058 GCTTGTAAATTCATACAATGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTCGTTT
191 GCTTGTAAATTCATACAATGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
14201123 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTCGAAGCAA
256 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGCAA
* * *
14201188 TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAGAAAAAGTCAGC
321 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-A-AAAAATTCAGC
14201253 TAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
384 TAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
14201318 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAG
449 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAG
14201383 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
514 GTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
14201448 CACAACCCCCCGCCGCCCCGATTAGCCGGAACCCCAATTGCCGTCGGGTTAGGTTCTCCTGCGA-
578 CACAACCCCCAGCC-CCCCGA-TAGCCGGAACCCCAA-TGCC-ACCGGTCAGGTTCTCCGGCGAC
*
14201512 T-T-G-G-T-TTGCCCCGGCGAAGAAAGAATG-GGCACCAACACATGCCCTGAGCACCAGCATTG
639 TCTGGAGATGGTGCCCCGGCGAAGAAA-AATGCGGCACCAACACATGCCC-GAGC-CCAGCA-TG
14201571 TGCTGCT
700 TGCTGCT
*
14201578 GCAACCCTCGGTCCGGTCTGATCTTATGACTAGGATTGAACTCCGT-TGCCTAAGCCAACCAACG
1 GCAACCCTCGGTCCGGTCTGATCTTA-GACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACG
*
14201642 AAATGAGGGGACGGTGGCGGTAGGCACTACCGTCGGCCAGAGAGACAGGATGCGCAAGCCAGTGG
65 AAATGA-GGG-CGGTGGCGG-AGGCACTA-CGCCGGCCAGAGAGACAGGATGCGCAAGCC-GTGG
*
14201707 ATAGGATAGGGTGGTTAGGTGGGTTTAGGCACATTCTTCATATTTCTGTGTGCCAATGCCATGTT
125 ATA-GATAGGGTGG-TAGGTGGGTTTAGGCACA-TCTTCATATTTCTGTGTGCCAATGCCATTTT
14201772 TATGGCTTGTAAATTCATACAATGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
187 TATGGCTTGTAAATTCATACAATGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
14201837 GTTTTTTATTTTTGATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAA-TCTTTTGGAA
252 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAA
* *
14201900 GCAGTTTTGGCCCCAAACTTGGTAGACGTGGATCCTT-TATTTTTGTTGGCATGCCAAAAAACTT
317 GCAATTTTGGCCCCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATG-CAAAAAAATT
* *
14201964 CATGCTAAAAACTCGGAAGTGGTACAAGATTTGGTTGACCATTTGAAAAAAGTGT-CCCATTTCA
380 CA-GCTAAAAACTC-GAAAT-GTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCA
**
14202028 GATGC--TAATGGCTTACTGGCAGC-AACCATGTAAAATCTC-AATGC-CTTTAAAGGGGGTGTG
441 GACACTTTAATGGC-TACTGGCAGCAAACC-TGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTG
14202088 AGTTCTCGGAGGTTTGATTGAGGGA-AGGGGGCCAATATAATGGCCAAGTACCAGGCA-CCATCG
504 AGTTCTC-GAGGTTTGA-TGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCA-GCACCCATCG
* * * * * *
14202151 CACAATCATGTGC-CACACCACCCCCTGGCCCCCGAATCGTCGGAAACCCCAA-GTCGCCTGGTC
565 CAC-ATCATGTGCGCACA--ACCCCCAGCCCCCCG-ATAGCCGG-AACCCCAATGCCACC-GGTC
* * * * ** * *
14202214 AAG-TCTCTGGTGATGCTCCGGCA-ATGGTGCCCTAGTGAAGAAAAATGCGACACCAACACATGC
624 AGGTTCTCCGGCGA--CTCTGG-AGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGC
*
14202277 CCGAGCCCAGCATGTGCTGCC
686 CCGAGCCCAGCATGTGCTGCT
* * ** * * * *
14202298 GTAACCTTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGC
1 GCAACCCTCGGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGC
14202347 TTAGACTAGG
Statistics
Matches: 1327, Mismatches: 92, Indels: 111
0.87 0.06 0.07
Matches are distributed among these distances:
701 63 0.05
704 1 0.00
705 3 0.00
708 1 0.00
710 3 0.00
711 67 0.05
712 263 0.20
713 101 0.08
714 84 0.06
715 145 0.11
716 175 0.13
717 96 0.07
718 191 0.14
719 40 0.03
720 50 0.04
721 6 0.00
722 9 0.01
723 29 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (706 bp):
GCAACCCTCGGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGA
AATGAGGGCGGTGGCGGAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATAGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGCAATTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAATTCAGCTAAAAAC
TCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCC
CCAGCCCCCCGATAGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGACTCTGGAGATGGT
GCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCT
Found at i:14202358 original size:26 final size:26
Alignment explanation
Indices: 14202320--14202372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202310 CCAATCCGAT
* *
14202320 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14202346 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14202372 C
1 C
14202373 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.