Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 89 of 190
Found at i:14203260 original size:26 final size:26
Alignment explanation
Indices: 14203208--14203260 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14203198 CTGGTCCTAT
* *
14203208 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
14203234 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
14203260 C
1 C
14203261 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:14203778 original size:887 final size:871
Alignment explanation
Indices: 14201571--14205161 Score: 4179
Period size: 887 Copynumber: 4.1 Consensus size: 871
14201561 ACCAGCATTG
* * * * *
14201571 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTATGACTAGGATTGAACTCCGT-TGCCTAAGCCA
1 TGCTACTGCAACCCTCGATCTGGTCTAATCTTA-GACTAGGAATGAACTCCGTATGCCTAAGCCA
* ** ** * *
14201635 ACCAACGAAATGAGGGGACGGTG-GCGGTAGGCACTACCGTCGGCCAGAGAGACAGGATGCGCAA
65 ACCGACGAAACAAGGGGACGG-GCG-GGCGGGCACTA-CGCCGGCCAGAGAGACGGGATGCGCAA
* **
14201699 GCCAGTGGATAGGATAGGGTGGTTAGGTGGGTTTAGGCACATTCTTCATATTTCTGTGTGCCAAT
127 GCC-GTGGAT-CGATAGGGTGG-TAGGTGGGTTTAGGCACA-TCTTCATATTTCTACGTGCCAAT
*
14201764 GCCATGTTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
188 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
14201828 AGACGACTCGTTTTTTATTTTTGATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAATC
253 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* *
14201892 TTTTGGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGGATCCTT-TATTTTTGTTGGCATGC-C
318 TTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCAC
* *
14201955 AAAAAACTTCATGCTAAAAACTCGGAAGTGGTACAAGATTTGGTTGACCATTTGAAAAAAGTGT-
382 AAAAAAATTCA-GCTAAAAACTC-GAAGT-GTACAAGATTTTG-TGACCATTTGAAAAAAGTGTC
** *
14202019 CCCATTTCAGATGC--TAATGGCTTACTGGCAGCAACCATGTAAAATCTC-AATGC-CTTTAAAG
443 CCCATTTCAGACACTTTAATGGC-TACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTT-AAG
*
14202080 GGGGTGTGAGTTCTCGGAGGTTTGATTGAGGGA-AGGGGGCCAATATAATGGCCAAGTACCAGGC
506 GGGGTGTGAGTTCTC-GAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GC
* * * *
14202144 A-CCATCGCACAATCATGTGCCACACCACCCCCTG-GCCCCCGAATCGTCGGAAACCCCAAGTCG
568 ACCCATCGCAC-ATCATGTG-CACA-CACCCCCAGCCCCCCCG-ATCGCCGG-AACCCTAA-T-G
* * * * ** * *
14202207 CCTGGTCAAGTCTCTGGTGATGCTCCGGCAATGGTGCCCTAGTGAAGAAAAATGCGACACCAACA
626 CC--GTC--G-GTCAGGT--T-CTCCGGCGATGCT--CCGGGCGAAGAAAAATGCGGCACCAACA
* * *
14202272 CATGCCCGAGCCCAGCATGTGCTGCCGTAACCTTCGGTCCAATCCGATCTTAGACTGGGAATGAA
681 CATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-C--T--GGTCTT---C----AGTG-A
* * *
14202337 CTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGG
733 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
* *
14202402 GTGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTG
798 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCGCTGCGTG
*
14202465 TTGCCGAA-CC
862 CTGCC-AATCC
* * * *
14202475 TGTTGCCT-CATCCCTCGATCTGGTCTAATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCA
1 TGCT-ACTGCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14202539 ACCGACGAAACGAGAGGGCGGGCGGGTGGGCGTGCATTACGCCAGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAAC-A-A-GG-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14202604 AGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATC-TCATATTTTTGCGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * * *
14202668 CTTTTTATGGCTTGTAAATTCATACATTGGTCCCTTGAGCCTTCACGTGAAGTTTAATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14202733 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGATTCGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
14202798 TCGGAAGGCGTTTTGGACCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGACATGCACAAA
321 TC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14202863 AAAATTCAGCTGAAAACTCGACGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTT
385 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14202928 CAAACACTTTAATGGCTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
14202993 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
14203058 TCACGTGTGCACACACCCCCAGCCCCCCCGATCGCCGGAA-CCTCAATGCCGTCGGTCAGGTTCT
580 TCA--TGTGCACACACCCCCAGCCCCCCCGATCGCCGGAACCCT-AATGCCGTCGGTCAGGTTCT
* *
14203122 CCGGCGATGCTCC-GGCGAGGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCC
642 CCGGCGATGCTCCGGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
14203186 GTAACCCTCGGTCTGGTCCTATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
707 GTAACCCTCGGTCTGG-----TCTT---C-A-G--TG-ACTTCGTATGCTTAGACTGGGAATGAA
* * *
14203251 CTCCGCATGCCTAAGTAAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGA
759 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * *
14203316 TGCGCAAGCCGGGGATCGATTGGGTCCCCCGCTACGTGCTGCCAATCC
824 TGCGCAAGCCGAGGATCGATCGGGTCCCCCGCTGCGTGCTGCCAATCC
* *
14203364 TGCTACTGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACTGCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
14203429 CCGACGAAACAAGTGGG-CGGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGTC
66 CCGACGAAACAAG-GGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14203493 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC-ATT
* ** * *
14203558 TTTACGAATTGTAAATTCATACGATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGA
194 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
14203623 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTC
259 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTC
* * * *
14203688 GAAGGAGTTTTGGCCCCAAACTTGATAGACATGATCCTTGTATTTTTTTTGGCATGCAGAAAAAA
323 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14203753 ATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14203818 ACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
14203883 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * ** * *
14203948 TGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGACG
583 TGTGCACACACCCCCAGCCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCG
* * * *
14204013 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACTAACACATGCCTGAGCCTAGCATG
648 ATGCTCC-------G-G----G-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* ** *
14204078 TGCTACCGCGACCCTCGATCTGG--TTC---GA-TT--T-TG----GACTGGGAATGAACTCCGT
700 TGCTGCCGTAACCCTCGGTCTGGTCTTCAGTGACTTCGTATGCTTAGACTGGGAATGAACTCCGT
* * * *
14204130 ATGCCTAAGTCAACCTACGAAATGACCGTGCGGGTGATCAGCCGGCCAGAGGGGCGGGATGCGTA
765 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* ** ** *
14204195 AGTCGAGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
830 AGCCGAGGATCGATCGGGTCCCCCGCTGCGTGCTGCCAATCC
* * ** *
14204237 TACTGCCACAACCCTC-AGTTTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACTGCAACCCTCGA-TCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14204301 ACCGATGAAATGAGCAGGCAGACGGCCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCA
65 ACCGACGAAA-CA--AGG-GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14204366 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
14204431 ATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCTTTCACGTGAAGCTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14204496 CGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * **
14204561 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGTTATGCACAAAA
321 TCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14204626 AAAGTT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AGAAAGTGTCCCCATTT
386 AAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14204689 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14204754 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTAACAGCCCCCATCGCACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * **
14204819 TCATGTGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCTATCGGTCAGGTTCTCC
580 TCATGTGCACACA-CCCCCAGCCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCC
* ** * *
14204884 GACGATGCTCCAGTGATGGTGCCCCGGCGAAGAAAAATATGGTACCAACACATGCCCGAGCCTAG
644 GGCGATGCTCC---------G----GGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
*
14204949 CATGTGCTGCCG-AAACC-C--TC-GGTC--CAGT--C--CG-AT-CTTAGACTGGGAATGAACT
696 CATGTGCTGCCGTAACCCTCGGTCTGGTCTTCAGTGACTTCGTATGCTTAGACTGGGAATGAACT
* * *
14205001 CCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATA
761 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * *
14205066 CGCAAGTCAAGAATCGATCGGGTCCCCCGGTGCATGCTGCCAATCC
826 CGCAAGCCGAGGATCGATCGGGTCCCCCGCTGCGTGCTGCCAATCC
* * * * *
14205112 TGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
1 TGCTACTGCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCC
14205162 CACGGGATAC
Statistics
Matches: 2354, Mismatches: 252, Indels: 191
0.84 0.09 0.07
Matches are distributed among these distances:
870 3 0.00
871 2 0.00
872 2 0.00
873 175 0.07
874 157 0.07
875 354 0.15
876 122 0.05
877 104 0.04
878 1 0.00
880 3 0.00
881 1 0.00
882 1 0.00
883 1 0.00
885 140 0.06
886 26 0.01
887 355 0.15
888 153 0.06
889 120 0.05
890 1 0.00
891 11 0.00
892 3 0.00
894 6 0.00
895 1 0.00
897 3 0.00
898 1 0.00
899 58 0.02
900 3 0.00
901 69 0.03
902 131 0.06
903 138 0.06
904 142 0.06
905 23 0.01
906 28 0.01
907 10 0.00
908 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (871 bp):
TGCTACTGCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGGGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCACACACCCCCAGCCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCCGGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
GGTCTGGTCTTCAGTGACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG
GGTCCCCCGCTGCGTGCTGCCAATCC
Found at i:14204947 original size:875 final size:875
Alignment explanation
Indices: 14201578--14205161 Score: 4320
Period size: 875 Copynumber: 4.0 Consensus size: 875
14201568 TTGTGCTGCT
* * * * *
14201578 GCAACCCTCGGTCCGGTCTGATCTTATGACTAGGATTGAACTCCGT-TGCCTAAGCCAACCAACG
1 GCAACCCTCGATCTGGTCTAATCTTA-GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* ** * *
14201642 AAATGAG-GGGACGGTG-GCGGTAGGCACTACCGTCGGCCAGAGAGACAGGATGCGCAAGCCAGT
65 AAACGAGAGGGACGG-GCG-GGCGGGCACTA-CGCCGGCCAGAGAGACGGGATGCGCAAGCC-GT
** *
14201705 GGATAGGATAGGGTGGTTAGGTGGGTTTAGGCACATTCTTCATATTTCTGTGTGCCAATGCCATG
126 GGATA-GATAGGGTGG-TAGGTGGGTTTAGGCACA-TCTTCATATTTCTACGTGCCAATGCCATT
14201770 TTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
188 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
14201834 CTCGTTTTTTATTTTTGATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAATCTTTTGG
253 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGG
*
14201898 AAGCAGTTTTGGCCCCAAACTTGGTAGACGTGGATCCTT-TATTTTTGTTGGCATGC-CAAAAAA
318 AAGGAGTTTTGGCCCCAAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
14201961 CTTCATGCTAAAAACTCGGAAGTGGTACAAGATTTGGTTGACCATTTGAAAAAAGTGT-CCCATT
382 ATTCA-GCTAAAAACTC-GAAGT-GTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATT
**
14202025 TCAGATGC--TAATGGCTTACTGGCAGC-AACCATGTAAAATCTC-AATGC-CTTTAAAGGGGGT
443 TCAGACACTTTAATGGC-TACTGGCAGCAAACC-TGTAAAATCTCAAATGCTCTTT-AAGGGGGT
*
14202085 GTGAGTTCTCGGAGGTTTGATTGAGGGA-AGGGGGCCAATATAATGGCCAAGTACCAGGCA-CCA
505 GTGAGTTCTC-GAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCCA
* *
14202148 TCGCACAATCATGTGCCACACCACCCCCTGG-CCCCCGAATCG-TCGGAAACCCCAAGTCGCC-T
567 TCGCAC-ATCATGTG-CACA-CACCCCCCGGCCCCCCG-ATCGCTCGG-AACCCTAA-T-GCCGT
* * ** ** ** * *
14202210 -GGTCAAG-TCTCTGGTGATGCTCCGGCAATGGTGCCCTAGTGAAGAAAAATGCGACACCAACAC
625 CGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACAC
* *
14202273 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCTTCGGTCCAATCCGATCTTAGACTGGGAATGAAC
690 ATGCCCGAGCCCAGCATGTGCTACCGCAA----C---CC--T-CGA---T---CT--G---G--C
* * * *
14202338 TTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGG
732 TTCGAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * *
14202403 TGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGT
796 TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCGCTGCGTGC
* *
14202466 TGCCGAA-CCTGTTGCC
860 TGCC-AATCCTGCTACC
* * *
14202482 TCATCCCTCGATCTGGTCTAATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14202547 AACGAGAGGG-CGGGCGGGTGGGCGTGCATTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTG
66 AACGAGAGGGACGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
14202611 GATAGATAGGGTGGTAGGTGGGTTTAGGCACATC-TCATATTTTTGCGTGCCAATGCCCTTTTTA
127 GATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
* * * *
14202675 TGGCTTGTAAATTCATACATTGGTCCCTTGAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCG
192 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
14202740 TTTTCTATTTTTCACGATTTTTGAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTCGGAAG
257 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAG
* * * * *
14202805 GCGTTTTGGACCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGACATGCACAAAAAAATTC
321 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
14202870 AGCTGAAAACTCGACGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACAC
386 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14202935 TTTAATGGCTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
451 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
14203000 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTG
516 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TG
* *
14203065 TGCACACACCCCCAGCCCCCCCGATCGC-CGGAA-CCTCAATGCCGTCGGTCAGGTTCT-C--CG
579 TGCACACACCCCCCGGCCCCCCGATCGCTCGGAACCCT-AATGCCGTCGGTCAGGTTCTCCGACG
* * *
14203125 --G---C---GA---TGCTCCGGCGAGGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATG
643 ATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * *
14203179 TGCTGCCGTAACCCTCGGTCTGGTCCTATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGG
708 TGCTACCGCAA-CC-C--TC--G----A---T---CT--G---G--CTTCGAAT-CTTAGACTGG
* *
14203244 GAATGAACTCCGCATGCCTAAGTAAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
749 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
* * * * *
14203309 GGTGGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCGCTACGTGCTGCCAATCCTGCTACT
814 GGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCGCTGCGTGCTGCCAATCCTGCTACC
* *
14203371 GCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
14203436 AACAAGTGGG-CGGGCGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATC
66 AACGAGAGGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATA
* * *
14203500 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAATTTTTACGA
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC-ATTTTTATGG
* * *
14203565 ATTGTAAATTCATACGATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
14203630 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTCGAAGGAG
260 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAG
* * * *
14203695 TTTTGGCCCCAAACTTGATAGACATGATCCTTGTATTTTTTTTGGCATGCAGAAAAAAATTCAGC
324 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
14203760 TAAAAAGTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACAATTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14203825 AATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
14203890 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAC
* *
14203955 ACACCCCCCGGCCCCCCGATC-ATCGGAACCCTAATGCCGTCAGTCAGGTTCTCCGACGATGCTC
584 ACACCCCCCGGCCCCCCGATCGCTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * * *
14204019 CGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACTAACACATGCCTGAGCCTAGCATGTGCTAC
649 CGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTAC
* * * *
14204084 CGCGACCCTCGATCTGG-TTCG-ATTTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTA
714 CGCAACCCTCGATCTGGCTTCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * **
14204147 CGAAATGACCGTGCGGGTGATCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGGATCGGCCGG
779 CGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGG
** * * *
14204212 GTCCCCTTCTGCGTGCTGCCGATCCTACTGCC
844 GTCCCCCGCTGCGTGCTGCCAATCCTGCTACC
* * *
14204244 ACAACCCTC-AGTTTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 GCAACCCTCGA-TCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14204308 AAATGAGCAGGCAGACGGCCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTG
65 AAACGAG-AGG--GACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14204373 GATCA-ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
127 GAT-AGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
14204437 ATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCTTTCACGTGAAGCTTCATGGCAAGACGACTC
191 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
14204502 GTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTGGAAG
256 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAG
* **
14204567 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGTTATGCACAAAAAAAGTT
321 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TT
* *
14204632 -AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AGAAAGTGTCCCCATTTTAGACA
385 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
14204695 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
450 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
14204760 GAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTAACAGCCCCCATCGCACATCATGT
515 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
**
14204825 GCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCTAATGCTATCGGTCAGGTTCTCCGACGA
580 GCACACACCCCCCGG-CCCCCCGATCGCTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGA
* ** * *
14204889 TGCTCCAGTGATGGTGCCCCGGCGAAGAAAAATATGGTACCAACACATGCCCGAGCCTAGCATGT
644 TGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* * * ** *
14204954 GCTGCCGAAACCCTCGGTCCAG-TCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
709 GCTACCGCAACCCTCGATCTGGCTTCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
14205017 ACCCACGAAATGAGCATGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGTCAAGAATCG
774 ACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
* *
14205082 ATCGGGTCCCCCGGTGCATGCTGCCAATCCTGCTACC
839 ATCGGGTCCCCCGCTGCGTGCTGCCAATCCTGCTACC
* * * *
14205119 GTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCC
1 GCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCC
14205162 CACGGGATAC
Statistics
Matches: 2362, Mismatches: 251, Indels: 163
0.85 0.09 0.06
Matches are distributed among these distances:
872 1 0.00
873 178 0.08
874 165 0.07
875 382 0.16
876 120 0.05
877 99 0.04
878 1 0.00
881 1 0.00
882 2 0.00
883 4 0.00
884 1 0.00
885 123 0.05
886 25 0.01
887 352 0.15
888 154 0.07
889 129 0.05
890 2 0.00
891 1 0.00
893 2 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 2 0.00
898 2 0.00
899 54 0.02
900 4 0.00
901 75 0.03
902 134 0.06
903 135 0.06
904 149 0.06
905 25 0.01
906 27 0.01
907 7 0.00
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (875 bp):
GCAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGAGGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATA
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC
ACCCCCCGGCCCCCCGATCGCTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
GTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCG
CAACCCTCGATCTGGCTTCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT
CCCCCGCTGCGTGCTGCCAATCCTGCTACC
Found at i:14205924 original size:810 final size:810
Alignment explanation
Indices: 14204354--14205970 Score: 2391
Period size: 810 Copynumber: 2.0 Consensus size: 810
14204344 GGCTAGAGAG
*
14204354 ACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
1 ACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
** *
14204419 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCTTTCACGTGAAGC
66 CATGCCAATGCCATTTTTATGAATTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGC
* *
14204484 TTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGATTT
131 TTCATGGCAAGACGAATCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGACTT
* * * *
14204549 TTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTG
196 TTTAAAATTTTTTCGAAGGAGTTTTAGCCCCAAACTTGATAGACATGATCCTTGCATTTTTGTTG
** * * * *
14204614 TTATGCACAAAAAAAGTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAGT
261 GCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAGT
** * * *
14204679 GTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
326 GTCCCCATTCCAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATATCAAATGCACTTTAA
* * * * *
14204744 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTAACAGCCC
391 GGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATAACAACAC
* * * *
14204809 CCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCTAATGCTATCGGT
456 CCATCGCACATCATGTGCACACACCCCCCCGACCCCCCGATCGCTGGAACCCCAATGCCATCGGT
* * * ** *
14204874 CAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGGCGAAGAAAAATATGGTACCAACACATGC
521 CAGGTTCTCCGACGATGCACCAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACATGC
* *
14204939 CCGAGCCTAGCATGTGCTGCCGAAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
586 CCGAGCCCAGCATGTGCTGCCGAAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* *
14205004 TATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATACGC
651 TATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATACGC
* * * ** * * * *
14205069 AAGTCAAGAATCGATCGGGTCCCCCGGTGCATGCTGCCAATCCTGCTACC-GTAACCCTCGGTCT
716 AAGCCAAGAATCAACCAAGTCCCCCGCTACATGCTGCCAATCCTGCTACCAGCAACCCTCGGTCC
*
14205133 GGTCCAATCTTAGACTGGGAATGAACTCCC
781 AGTCCAATCTTAGACTGGGAATGAACTCCC
* *
14205163 ACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTA
1 ACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * *
14205228 CGTGCCAATGCCATTTTTATGAATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
66 CATGCCAATGCCATTTTTATGAATTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGC
*
14205293 TTCATGGCAAGACGAATCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGACTT
131 TTCATGGCAAGACGAATCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGACTT
* *
14205358 TTTAAAATTTTTTTCGAAGGTGTTTTAGCCCCAAACTTGATAGACATGATCCTTGTATTCTTT-T
196 TTTAAAA-TTTTTTCGAAGGAGTTTTAGCCCCAAACTTGATAGACATGATCCTTGCATT-TTTGT
* *
14205422 TGGCATGCACAAAAAAAATCAGCTAAAAACTCGAGGTGTATAAGATTTTGTGACCAATTGAAAAA
259 TGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTG-AAAA
14205487 AGTGTCCCCATTCCAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATATCAAATGCACTT
323 AGTGTCCCCATTCCAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATATCAAATGCACTT
* *
14205552 TAAGGGGGTGTGAGTTCTTGAGGGTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAATACCAA
388 TAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATAACAA
* * *
14205616 CATCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCG-TCGGAACCCCAATGCCGT
453 CACCCATCGCACATCATGTGCACACACCCCCCCGACCCCCCGATCGCT-GGAACCCCAATGCCAT
* * * *
14205680 CGGTCAGGTTCTCCGTCGTTGCACCAGCGATGGTGCCTCGACGAAGAAAAATGCAGCACCAACAC
517 CGGTCAGGTTCTCCGACGATGCACCAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAACAC
* *
14205745 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCC-GATCTGATCTTAGACTGGGAATGAA
582 ATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCAGTCCAG-TCCGATCTTAGACTGGGAATGAA
** *
14205809 CTCCGTATGCCTAAGTCAACCCAC-AGAATGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGGCGAG
646 CTCCGTATGCCTAAGTCAACCCACGA-AATGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGAG
* * * * * * *
14205873 ATGCGCAAGCCGAGGATCAACCAAGTCCCCCTCTACGTGCTGTCGATCCTGCTACCAGCAACCCT
710 ATACGCAAGCCAAGAATCAACCAAGTCCCCCGCTACATGCTGCCAATCCTGCTACCAGCAACCCT
* *
14205938 TGGTCCAGTCCGATCTTAGACTGGGAATGAACT
775 CGGTCCAGTCCAATCTTAGACTGGGAATGAACT
14205971 TCATATACCT
Statistics
Matches: 718, Mismatches: 83, Indels: 12
0.88 0.10 0.01
Matches are distributed among these distances:
809 193 0.27
810 388 0.54
811 137 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (810 bp):
ACGGGATACGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CATGCCAATGCCATTTTTATGAATTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGC
TTCATGGCAAGACGAATCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTTGGGACTT
TTTAAAATTTTTTCGAAGGAGTTTTAGCCCCAAACTTGATAGACATGATCCTTGCATTTTTGTTG
GCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAGT
GTCCCCATTCCAGACACTTTAATGGCTACCGGCAGCAAACCTGTAAAATATCAAATGCACTTTAA
GGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATAACAACAC
CCATCGCACATCATGTGCACACACCCCCCCGACCCCCCGATCGCTGGAACCCCAATGCCATCGGT
CAGGTTCTCCGACGATGCACCAGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACATGC
CCGAGCCCAGCATGTGCTGCCGAAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATACGC
AAGCCAAGAATCAACCAAGTCCCCCGCTACATGCTGCCAATCCTGCTACCAGCAACCCTCGGTCC
AGTCCAATCTTAGACTGGGAATGAACTCCC
Found at i:14209112 original size:26 final size:26
Alignment explanation
Indices: 14209083--14209136 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14209073 TCCGATCTGA
* *
14209083 GCTTAGAGTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
14209109 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
14209135 GC
1 GC
14209137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:14211299 original size:874 final size:873
Alignment explanation
Indices: 14206631--14212536 Score: 7209
Period size: 902 Copynumber: 6.7 Consensus size: 873
14206621 GCCCAACATG
* * * * *
14206631 TGCTACTGCAACCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14206696 CCGATGAAACGAACGGGCA----GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCT
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
***
14206757 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14206822 TATGTCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
14206887 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAA
* * * *
14206952 AGAAGTTTTAGCCGTAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
14207017 TCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
14207082 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
14207147 CGAGGTTTGATGAGGGAT-AGGGGTCCAAGATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
521 CGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
14207211 GTGCGCACACCCCACCGGCCCCCCCGATCG-CTGGAACCCCAATGCCG-TCGTTCAGGTTCTTCG
585 GTGCGCACACCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCTGCTCGGTCAGGTTCTCCG
* * ** * *
14207274 GTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACAGCACCAACACATGCCCGAGCCCAGC
648 GCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* * * * *
14207339 ATCTGCTGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
712 ATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * ** *
14207404 CAACCCATGAAACGAGCGTGCAGGTGCTCAGTCGACTGGAGGGGTGGGATGCGCAAGCCGGGGAT
777 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* *
14207469 CGACCGGGTCCCCCTCTACGTGCTTCCGATCC
842 CGATCGGGTCCCCCTCTACGTGCTACCGATCC
* * ** ** * * *
14207501 AGCTATCGCCGCCCTTGGTCTGGTCCGATCTAAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14207566 CCGACGAAATGAGCGGG-AGGGCGGGCGGGCAGGCACTACGTCGGCCAAAGAGACGGGATGCGCA
66 CCGACGAAACGAGCGGGCA-GGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * ***
14207630 AGCCGTGTATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** *
14207695 ATTTTTATTACTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14207760 CGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * *
14207825 TCGAAAGGAGTTTTGGCCATAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTCACAAA
321 TCGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14207890 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTATCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14207954 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14208019 GTTCTCGAGGTTTGATAAGGGATACGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14208084 TCATGTGCGCACATCCCACCGGCCCCCCCGATC-ACTGGAACCCCAATG-T-CGTCGGTCAGGTT
581 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCTGC-TCGGTCAGGTT
* *
14208146 CT---TCGA---T----GATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCC
643 CTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
*
14208201 CAGCATGTGCTGCCACAACCCTCGGTCCGGCCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
708 CAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
14208266 AAGTCAACCCACGAAATGAGTGTACCGGTGCTCAACAGGCCGGAGGGGCGGGATGCACAAGCCGG
773 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * *
14208331 GGATCGATCGGGTCCTCCTCTGCGTGCTTCCGATCC
838 GGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * * * *
14208367 TGCTGCCGCAACCCTCAATGTGGTCTGATCTAAGATTAGGAATGAACTCTGTATGCCTAAGCCGA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14208432 CCGACGAAATGAGC--G--GGCGGGCGGGCACTACACCGGCCAGAGAGACGAGATGCACAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
14208493 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
14208558 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
14208623 CGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAA
* * *
14208688 AGGAGTTTTGGTCGTAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
326 AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
14208753 TCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14208818 ACTTTAAAT-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTC
456 ACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
14208882 TCGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
520 TCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** *
14208947 GTGCGCACACTGCCCCCAACCCCCCCCGATCGTCGGAACCCCAATGCCG-TCGGTCAGGTTC-CC
585 GTGCGCACAC--CCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCTGCTCGGTCAGGTTCTCC
** * * *
14209010 --C-A---------A---T--------GAAGAAAAATGTGGCACCAACACATGCCCGAGGCCAGT
647 GGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
** * *
14209052 ATGTGCTGCTGCAACGCTCGGTCCGATCTGAGCTTAGAGTGGGAATGAACTCTGTATGCTTAGAC
712 ATGTGCTGCCACAAC-C-C--T-CGGTC----C--------GG--T---C-C--AAT-CTTAGAC
* * *
14209117 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCAGCCAG
751 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAG
** * * * * * ** *
14209182 AGGGGCAAGATGCGCAATCCAGGGATCGGTCGGGTCCCCCTCTATGTACTGTCGATCT
816 AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
* *
14209240 TGCTACCGCAACCCTCAGTCTGGTATGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14209305 CCTACGAAATGAGCGGGCTGACGAGCGGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGTAA
66 CCGACGAAACGAGCGGGC--A-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14209370 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
14209435 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14209500 GACTCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
14209565 CAAAAGGATTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACATAA
322 CGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14209630 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14209695 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14209760 TTCTTGAGGTTT-ATGAGGGAT-AGGGGCCAAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 TTCTCGAGGTTTGATGAGGGATAAGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14209823 TCATTTGTGCACACCCCCC-CCACCCCCCTGATCGTCGGAACCCCAATGC-CCT-GGTCAGGTTC
581 TCATGTGCGCACACCCCCCGGC-CCCCCC-GATCGTCGGAACCCCAATGCTGCTCGGTCAGGTTC
* * * * *
14209885 TCCGACGATGCTCCGGCGATGGTGCCCTGGCGAAAAAAAATGCAGCACCAGCACTTGCCCGAGCC
644 TCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * * *
14209950 CAACATGTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAAGCTT
708 CAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT-A---T
* * * * *
14210015 AGACTGGGAATGAACTTCGTTCGCCTAAGTCATCCTATGAAACGAGCGTGCGGGCGGTCAACCAG
769 -G-C-----CT-AA----G-T---C-AA--C--CC-ACGAAACGAGCGTGCGGGTGCTCAACCGG
* * * * *
14210080 CCAGAGGGGCGGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCGTCTACGTGCTACTGATCC
812 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
* ** ** * * * **
14210142 TGCTGCCATAAAACTCGGTCTGGTCTCATCTTAGACTGAGAATGAACTCTATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14210207 CCGACGAAACGAGCGGGCGGGCGGTCGGGCGGTCACTATGCCGGCCAGAGAGACGGGATGC-CTA
66 CCGACGAAACGAGCGGGC---AGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC-A
* *
14210271 AACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14210336 ATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
14210401 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTGAAATTTTT
256 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * *
14210466 TTGGAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
321 TCGAAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
14210531 AAAATTCAACTAAAAACTCAAAGTGTTCAAGTTTTTGTGACCATTTG-AAAAAGTGTCCCCATTC
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14210595 CAGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTGAAATGCTCTTTAAGGGGGAGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14210660 TTTCTCGAGGTTTGATGAGAGATAAGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14210725 TCATGTGCGCACACCCCCCTTGGCCCCCCCGATCGCCGAAACCCCAATGCTGCT-GGTCAGGTTC
581 TCATGTGCGCACACCCCCC--GGCCCCCCCGATCGTCGGAACCCCAATGCTGCTCGGTCAGGTTC
* * ** * **
14210789 TCCGGCGATGCTCTTGTGATGGCACCCCGACGAAGAAAAATGC-GATACCAGCACATTTCCGAGC
644 TCCGGCGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGC
* ** * *
14210853 CCAGCATGTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGTC
707 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * ** *
14210918 TAAGTCAACCCATGAAATGAGCGTGCAGGAGCTCAACCGGTTAGAGTGGCGGGATGCGCAAGCCG
772 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** *
14210983 GAGATCGATCGGATCCCTCTCTGTGTGCTACCAATCC
837 GGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
* * ** * * * * *
14211020 TGCTGCCGCAATCCTTGGTTTGATCTGATCTTCGATTGGGAATGAACTACGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14211085 CCGATGAAACGAGCGGGCAGGCGGGCGGGCATTACGCCAGCCAGAGAGATGGGATGCACAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14211150 T-GATTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCGAATGCCATTT
131 TGGA-TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14211214 TTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
14211279 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTC-
260 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCG
*
14211342 AGAAGGAGTTTTGGTCCC-AAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 A-AAGGAGTTTTGG-CCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14211406 AAA-TCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14211470 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
14211535 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCACGTACCAGCACCCATTGCACAT
517 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * * * * *
14211600 CATGTGTGAACACCCCCCGGTGCCCCTGATCGTCAGAACCTCAATG-TCGC-CAGTCAGGTTCTT
582 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCT-GCTCGGTCAGGTTCTC
* * * * *
14211663 CGGTGATTCTCCGAC-ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCCCAAGCCCA
646 CGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* *
14211727 GCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
710 GCATGTGCTGCCACAA-CC-C--T-C-G---G-TC-----C---G---G---TCCA-AT-CTTAG
* * * * * * *
14211792 ACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGTGTGTGGGCGCTCAGCCGACC
749 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCC
* * * *
14211857 ATAGGGGCGGGATGCACAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
814 AGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCC
** **
14211917 TGCTACCAAAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14211982 TCGATGAAACGAGC--G--GGC--G-GGG-ACTACGCCGGCTAGAAAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
14212039 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14212104 TATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14212169 CGTTTTCTATTTTTTATGATTTTCGAAACTTTTTGCTGTTC-AGGATTTTTTAAAATTTTTTCGA
261 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGA
* * *
14212233 AAGGATTTTTGGCCAC-CAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
325 AAGGAGTTTTGGCC-CTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
14212297 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14212362 ATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGGGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
14212427 ATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
519 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
14212492 GGTGCGCACACCCCCCGGGCCCCTCGATCGTCGAAACCCCAATGC
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
14212537 CTCCGGCGAT
Statistics
Matches: 4381, Mismatches: 489, Indels: 311
0.85 0.09 0.06
Matches are distributed among these distances:
847 47 0.01
848 1 0.00
849 1 0.00
851 1 0.00
852 4 0.00
855 1 0.00
856 1 0.00
858 310 0.07
859 155 0.04
860 9 0.00
861 36 0.01
862 8 0.00
864 3 0.00
866 255 0.06
869 2 0.00
870 68 0.02
871 56 0.01
872 47 0.01
873 219 0.05
874 427 0.10
875 8 0.00
876 27 0.01
877 216 0.05
878 487 0.11
879 9 0.00
880 61 0.01
881 421 0.10
882 1 0.00
883 3 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 2 0.00
888 5 0.00
889 263 0.06
890 222 0.05
891 2 0.00
892 4 0.00
893 5 0.00
894 1 0.00
895 5 0.00
896 3 0.00
897 176 0.04
898 1 0.00
899 2 0.00
900 2 0.00
901 91 0.02
902 562 0.13
903 27 0.01
904 119 0.03
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCTCGGTCAGGTTCTCCGGCG
ATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
CGGGTCCCCCTCTACGTGCTACCGATCC
Found at i:14213993 original size:26 final size:26
Alignment explanation
Indices: 14213964--14214016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14213954 CTGGTCCGAT
*
14213964 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCATATG
14213990 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
14214016 C
1 C
14214017 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14214392 original size:903 final size:891
Alignment explanation
Indices: 14212556--14215763 Score: 4124
Period size: 892 Copynumber: 3.6 Consensus size: 891
14212546 TGCTCCAACG
* * *
14212556 ATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGA-T
1 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* ** * *
14212620 TTTCAAAGCTTTTTGTGGTTC-GAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAAC
66 TTTGAAA-CTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* * *
14212684 TTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAC-TCAATG
129 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA-G
* *
14212748 TGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGTA
193 TGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
14212813 GTAAACTTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
258 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** * *
14212878 GGGGGCCAATATAAGGGCCAAGTACCAGTGCCCATCGCACATCAAGTGCGCACACCACCCTGCCC
323 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGGCCC
* * * * * *
14212943 CGCCGATCGTCGAAACCCCTAGTGCTG-CACGTCAGGTTCT-C-CGA----C-G--ATAGTGCCT
388 C-TCGATCGTCGAAACCCC-AATGCCGTCA-GTCAGATTCTCCGCGATGCTCGGCTATGGTGCCC
* * * ** * *
14212998 CGACGAAGAAAAATGTGGCACCAGCACATGCCAAAGCCTAGCATGTGCTGTCGTAACCCTCGGTC
450 CGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCAAGCATGTGCTACCCTAACCATCGGTC
* * * *
14213063 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTACGCCTA
515 TGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCC-TATGCCTA
* * * * * *
14213128 AGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCCTGCCAGAGGGGCGAGATGCGCAAGCTAGG
578 AGT-AACCCACGAAACGAGCGTGCGGGCACTCAGCC-GCCAGAGTGGCGGGATGTGCAAGCAAGG
* * * * * *
14213193 GATCGGCTGGGCCCCCCTCTACATGCTGTCGATCCAGCTGCCACAACCCTTGCTCCGGTCTGATC
641 GATCGGCTGGGTCCCCTTCTGCATGCTGTCGATCCTGCTGCC-CAACCCTTGATCCGAT-TGATC
** * * *
14213258 TTAGACTAAGAATGAACTCTGTATGCCCAAGCCAACCGAC-AAA--A-TGA--A-CGGGTGGGCG
704 TTAGACTGGGAATGAACTC-GTATGCCTAAGCCAACCGACGAAACGAGCGAGGAGCGGGCGGGCG
14213316 -G-GCACAACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
768 CGTGC-C-ACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14213379 TTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACA
831 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* **
14213440 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACAATT
1 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
14213505 TTTGAAACTTTTTATGGTTCAGGATTTTTTAAATTTTTTTTGAAAGGGGTTTTGGCACCAAACTT
66 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* *
14213570 GGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
131 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
*
14213635 ACAAGATTTTGTGACCATTTGAAGAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
196 ACAAGATTTTGTGACCATTTGAA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
14213700 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G
260 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
14213764 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCGCACA-C-CCCGGCCC
325 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCACACCACCCGGCCC
* * * * *
14213827 CTCGATTGTCGGAACCCCAATGCCGTCAATCAGATTCTCCAGCGATGCTAGGCTATGGTGCCCCA
388 CTCGATCGTCGAAACCCCAATGCCGTCAGTCAGATTCTCC-GCGATGCTCGGCTATGGTGCCCCG
* * *
14213892 ACGATGAAAAATGTGGCACCAGCACATGCCCAAGCCAAGCATGTGGTACCCTAACCATCGGTCTG
452 ACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCAAGCATGTGCTACCCTAACCATCGGTCTG
14213957 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCATATGCCTAAG
517 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG-GAATGAACTCC-TATGCCTAAG
* * * *
14214022 TTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGTGGTGGGATGTGCAAGTC-GGGG
580 -TAACCCACGAAACGAGCGTGCGGGCACTCAGCCG-CCAGAGTGGCGGGATGTGCAAG-CAAGGG
* * *
14214086 ATCGG-TCGGGTCCCCTTCTGCATGCTGTCGATCCTGCTGCCGTAACCCTTGGTCTGATTGGATC
642 ATCGGCT-GGGTCCCCTTCTGCATGCTGTCGATCCTGCTGCC-CAACCCTTGATCCGATT-GATC
* *
14214150 TTAGACTGGGAATGAACTCGTATGCCTAAGCTAATCGACGAAACGAGCGAGCGAGCGGGCGGGCG
704 TTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-GAGCGGGCGGGC-
* *
14214215 GGCGTGCCCTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
767 -GCGTG-CC-ACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * **
14214280 GTTTTGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATTACTTGTAAATTCATACA
829 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14214343 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
1 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * *
14214408 TTTAAAAC-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACTT
66 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
* * * * *
14214472 GGTGGACGTGATCAC-TGTATTTTTTTTGGCATGCACAAAAAATTTCATCTAAAAACTCGAAGTG
131 GGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
*
14214536 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
195 TACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14214601 CAAACCTGTAAAATCTCAAATGCTCTTTAACGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
259 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14214666 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCTCCCGGC
324 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A-CACCACCCGG-
* * * * *
14214731 CCCCTCGATAGCCGAAACCCCAATG-CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA-GGTGC
385 CCCCTCGATCGTCGAAACCCCAATGCCGTCAGTCAGATTCTCCG-CGATGCT-CGGCTATGGTGC
* * * *
14214794 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCAC-AACCCTCG
448 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCAAGCATGTGCTACC-CTAACCATCG
* *
14214858 GTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGC-----CT--AA-G--------T--C-
512 GTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCTATGCCT
* * *
14214904 ----AACCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGTGGCAGGAT-TCACAAGCAAG
577 AAGTAACCCACGAAACGAGCGTGCGGGCACTCAGCC-GCCAGAGTGGCGGGATGT-GCAAGCAAG
* * * * * *
14214964 GGATCGGCTGGGT-CCCTCTCTGCGTGCTGCCTATGCTGCTGCCCAACCCTCGATCCGATCCGAT
640 GGATCGGCTGGGTCCCCT-TCTGCATGCTGTCGATCCTGCTGCCCAACCCTTGATCCGAT-TGAT
14215028 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGC--GG-GCGGGCGGGC
703 CTTAGACTGGGAATGAAC-TCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGAGCGGGCGGGC
* *
14215090 AC-TG-CA--CCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTGGGTT
767 GCGTGCCACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14215151 TAGGCACATATTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
832 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14215211 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
1 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
*
14215276 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCAGAA-GATGTTTTGGCCCCAAAC
66 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGA-AAGGA-GTTTTGGCCCCAAAC
* *
14215339 TTGGTAGACGTGATCCTTGAATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
129 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
* * * *
14215404 GTACAAGATTATGTGGCCAATTGAATAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCA
194 GTACAAGATTTTGTGACCATTTGAA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14215469 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATA
258 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
14215534 GGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTGG-
323 GGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC-GGC
* * * *
14215597 CCCTCCGATCGTCGTAACCCCAAAGTCGTCGGTCA-AGTTCTCCAGCGATGCTCGGCTATGGTGC
386 CCCT-CGATCGTCGAAACCCCAATGCCGTCAGTCAGA-TTCTCC-GCGATGCTCGGCTATGGTGC
* * *
14215661 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTACCATAACCATCGG
448 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCAAGCATGTGCTACCCTAACCATCGG
* * *
14215726 TCTGTTCTGATCTTAGACTGGGAATGAACTCCGTATGC
513 TCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
14215764 CTAAGCCAAC
Statistics
Matches: 2064, Mismatches: 192, Indels: 153
0.86 0.08 0.06
Matches are distributed among these distances:
865 4 0.00
866 24 0.01
867 126 0.06
868 189 0.09
869 220 0.11
870 48 0.02
871 1 0.00
873 2 0.00
874 1 0.00
876 10 0.00
877 1 0.00
878 1 0.00
879 39 0.02
880 108 0.05
881 2 0.00
882 13 0.01
883 17 0.01
884 237 0.11
885 112 0.05
886 8 0.00
888 1 0.00
890 1 0.00
891 21 0.01
892 243 0.12
893 2 0.00
894 1 0.00
895 2 0.00
897 1 0.00
898 3 0.00
899 8 0.00
901 7 0.00
902 226 0.11
903 232 0.11
904 2 0.00
905 2 0.00
906 122 0.06
907 27 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCGGCCCCTC
GATCGTCGAAACCCCAATGCCGTCAGTCAGATTCTCCGCGATGCTCGGCTATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCAAGCCAAGCATGTGCTACCCTAACCATCGGTCTGGTCC
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCTATGCCTAAGTAACCC
ACGAAACGAGCGTGCGGGCACTCAGCCGCCAGAGTGGCGGGATGTGCAAGCAAGGGATCGGCTGG
GTCCCCTTCTGCATGCTGTCGATCCTGCTGCCCAACCCTTGATCCGATTGATCTTAGACTGGGAA
TGAACTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGGAGCGGGCGGGCGCGTGCCACGCCGG
CCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
Found at i:14217255 original size:26 final size:25
Alignment explanation
Indices: 14217196--14217255 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
14217186 CCTCGGTTCG
14217196 GTCCGAT-CTTAGACTGGGAATGAA
1 GTCCGATGCTTAGACTGGGAATGAA
* *
14217220 CTCTGGATGCTTAGACTGGGAATGAA
1 GTC-CGATGCTTAGACTGGGAATGAA
14217246 GTCCGTATGC
1 GTCCG-ATGC
14217256 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 2 0.07
25 4 0.14
26 23 0.79
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (25 bp):
GTCCGATGCTTAGACTGGGAATGAA
Found at i:14218306 original size:903 final size:899
Alignment explanation
Indices: 14215903--14240853 Score: 18899
Period size: 903 Copynumber: 27.5 Consensus size: 899
14215893 GCCAATGCCA
** * * ***
14215903 TTTTT-GGAAGGAGTTTTACCCCCAAACTTGGTAGAGGTGATCCTTGTATTTTTATTGGTGCGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14215967 CAAAAAAATTTAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CTC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
14216031 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
14216096 GTGAGTTCTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAGGTACCAGCACCTATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14216161 CACATCATGTGCGTACACACCCCCCGGCCCCCCAATCACCAGAACCCCAATGCCGCCGGTCAGGT
261 CACATCATGTGCG--CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
** * * * *
14216226 TCTCTTGCGATGCTCCGACGATGGTGCCCCGGA-GAAGAAAAATGCAACACCAACATATGCCTGA
324 TCTCCGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATG--GCACCAGCACATGCCCGA
* * *
14216290 GCCCTGCATGTGGTGCCACAA-CC-C--TC--G---G---TT---CT----AT----T-CG-AT-
386 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14216329 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGT
451 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ***
14216394 TGGCCAGAGGGGCGGGATTCGTAAACCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGATTATCC
516 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14216459 TGCTGCCGCAACCCTCAGTTCGGTCTGTTCATAGACTGGGAATGAACTTCGTAAGCCTAAGCCAA
581 TGCTGCCGCAACCCTC-GGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14216524 CCGACGAAACGAGCGGGCGAGCAGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
645 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** * * *
14216589 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCATTTCTTCATACTTCTACGTGCCAATGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14216654 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
14216719 CACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCAGGATTTTTTTAAAT
840 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
** * *
14216779 TTTTTC---AGGAGTTTTATCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14216841 CAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGTCTCT
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14216904 ATTTCAGACACTTTAATGGCTACTGGCA-CAAACACTGTAAAACCTGCATATGCTC-TTAAAGGG
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAAC-CTGTAAAATCT-CAAATGCTCTTTAAGGGG
* *
14216967 GTGTGAGTTCTCGAGGTTTTATGAGGGATAGGGGGCCAATATATA-GGCCAAGTATCAGCACCCA
194 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCA
* *
14217031 TCGCACATCATTGTG-GTTCACACGCCCCCGGTCCCCCCGATCGTCGGAACCCCAATACCG-CGG
258 TCGCACATCA-TGTGCG--CACAC-CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGG
* * * ** * *
14217094 TCAGGTTATCCGGTGATGCTCCGACGATGGTTCCCCGGTGAAAAAAAATGTGACACCAACACATG
318 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-G-CACCAGCACATG
* *
14217159 CTC-ATGCCCAGCATGTGCTGTCGCAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACT
381 CCCGA-GCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACT
* * * * *
14217222 CTGGATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGT
444 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * *
14217287 GCCCAGTCGGCCAGAAGGGCTGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
509 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
** * * * *
14217352 ATGATCCTGCTGCCGTAACCCTCAGTTCGGT-CTATTCATAGACTGGGAATGAACTCCGTATGCC
574 CCGATCCTGCTGCCGCAACCCTC-GGTCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCC
* * * **
14217416 TAAGCCAATCGACAAAATGAGCGGGCAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
637 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
14217481 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTTATATTTCTGCATGC
702 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
** *
14217546 CAATATCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCAT
767 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
14217611 GGCAAGACGGCTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGAGGTTCGGGATTTTTTAA
832 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAA
14217676 AAT
897 AAT
** * *
14217679 TTTTTCGGAAGGAGTTTTCACCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14217744 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14217808 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGA
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14217873 GTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14217938 CACATCATGTGCGCACAGCCCCCCGGTCCCCCCGATCACCGAAACCCTAATGCCGTCGGTCAGGT
261 CACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * *
14218003 TCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAATATGGCACCAACACATGCCTGAGC
324 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA-ATGGCACCAGCACATGCCCGAGC
* * * ** * ** *
14218068 CTAGCATTTGCTGCCACAACAATCGGTCTGGCTCCGATCATAGTGTGAGAATGAACTCCGTATGC
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGG-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
14218133 TTAGACTGGGAATTAACTCCATTTGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCC
452 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * **
14218198 AGCCAGA-GGGCTGTGATGCACAAGCCGAGGATAGGTCGGGTCCCCCTCTGTGTGCTAACGATCC
517 GGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14218262 TACTGGCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
581 TGCTGCCGCAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14218327 CCGATGAAACGA----GCGTGCGGGCGGGCGGGCACTACGCCGGCCAAAAAGACGGGATGCACAA
645 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
14218388 GCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCATATGTTCATATTTTTGCATGCCAAAGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14218453 TTTTTATGGCTTCTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14218518 GACTCGTTTTCTATTTTTCATGA-TTTTGAAAACTTTTT-ACGGTTCGAGATTTTTTAAAAT
840 GACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * ** * * *
14218578 TTTTTTGGATGGAGTTTTGGCAACAAACTTTGT-GACGTGACCCTTATATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14218642 CAAAAAAATTCAGCTATAAACTCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14218707 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
14218772 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * **
14218837 CACATCATGTGCGCACAGCCCCCCTAGCCCCCTCGATCGCCGGAACCCCAATGCCGCCAATCAGG
261 CACATCATGTGCGCACA-CCCCCC-GGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
14218902 TTCTCCGACGATGCTCTTG-CGATGGTGCCCCGATGAAGAAAAATGCGGCTCCAACACATGCTCG
323 TTCTCCGGCGATGCTC-CGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCG
* * *
14218966 AGCCCAGCATGTGTTGCCGTAA--C-C---C---TCAG-TC-----C-------G-A-TCCG-AT
385 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14219006 -CTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCATGCGGGTGCTCAG
450 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
14219070 CCGGCCAGAGGGACAAGATGCGCAAGCCGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTGTCGAT
515 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * ** * * * *
14219134 CCTGCTGCCACAACCCTCGACTCGGTTTGATATTAGACTGGGAATGAACTCTGTATGCATAAACC
579 CCTGCTGCCGCAACCCTCG-GTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
14219199 AACCGATGAAATGAGCGGGCGGGCAGACGGGTTGGTCACTA---CGGCAAGAGAGACGGGATGCG
643 AACCGACGAAACGAGCGGGCGGGCGGGCGGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
14219261 CAAGTCGTGGATCGAAAGGGTGCTAGGT-GGTTTAGGCACATCTTCATATTTCT--ATGTTCCAA
707 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAA
14219323 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
770 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
14219388 AAGACGACTCGTTTTCT-TTTTACACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAAG
835 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* ** *
14219452 TTTTTC---AGGAGATTTATCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14219514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14219579 ATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTGAA-GGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14219643 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
14219708 CACATCATGTGCGCACAGCCCGCCCAGCCCCCCCGGTCGTCGAAACCCCAATGCCGCCGGTCAGG
261 CACATCATGTGCGCACA-CCC-CCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * *
14219773 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAA
323 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGA
* * * * **
14219838 GCCCAGCATGTGCTGCCGCAACCTTCGGACCGGTCCGATCTTAGACTGGAAATGAACTCCAAATG
386 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14219903 CTTACACTGGGAATGAACTCCGTATGCCTAATTCAACCCACAAAACAAGCGTACGGGTGCTCAGC
451 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *
14219968 CGGCCAGA-GGGCAAGATGCACAAGCCGAGGATCGG-CTGGGT-CCCC-CT-C-TG-TG--G---
516 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
14220021 --GCT---G-----C-CGGT---T-CGATTTTAGACTGGGAATAAACTCCGTATGCCCAAACCAA
580 CTGCTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14220071 CCGATGAAACGAGAGGGCGGGCGGGCGGGTGAGCACTACACCGGCGAGAGAGATC-GGATGCGCA
645 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA-CGGGATGCGCA
*
14220135 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
709 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14220200 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGA
774 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14220265 CGACTCGTTTTCTATATTTCATGA-TTTTGAAAACTTTTTGCGGTTCGGAATTTTTTAAAAT
839 CGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* * *
14220326 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGTATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
14220391 TAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGGGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14220456 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14220521 GTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * * *
14220586 CACATCATGTGCGCACACCCCCCAACACCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
261 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** ** *
14220651 CCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
326 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGCC
* * * * * *
14220716 CAGCATGTGGTGTCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCGGTATGCTT
389 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
14220781 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGCAGG
454 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
14220846 CCAGAGGGGCGGGATGCGCAAGCCTGGGATCGG-CTGGTTTCCCCTCTGCGTGTTGCCGATCCTA
519 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * * *
14220910 CTACCACAACCCTTGGTCTAGTCTGACCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
583 CTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** *
14220975 GACGAAACGAGCGGACGGGCGGGCAGGCGGGCACTACGCTAGCCCGAGAGACGGGATGCGCAAGC
647 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
14221040 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
14221105 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
14221170 CTCGTTTTCTATTTTTCATGATTTTTGTAACTTTTTTCGGTTTGGGATTTTTTAAAAT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* ** *
14221228 TTTTTCGGTAGGAGTTTTCACCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
1 TTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
14221293 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
65 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
14221358 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
14221423 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGCACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * *
14221487 GCACATCATGTGCGCGCACCCCCGGGCCCTCCGATCACCGGAACCCTAATGCCGCCGATCAGGTT
260 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
14221552 CTCCGGTGATGCTCTGGCGATGGTGCCCCGACGAA-AAAAATGTGACTCCAGCACATGCCCCAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-G-CACCAGCACATGCCCGAGC
*
14221616 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
14221681 TAGACTGGGAATGAACTCCGCACGCCTAAGTGAACCCACGAAACGAGCGTGCGGGTGCTCAGTCG
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * *
14221746 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCCGCTGATCCTG
518 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * **
14221811 CTGCCATAACCCTTGGTCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
583 CTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
14221876 GACGAAACGA-----------AG-GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGT
647 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
14221929 CGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
14221994 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14222059 CTCATTTTCTATATTTCATGA-TTTTGAAACCTTTTT-ACGGTTCGGAATTTTTAAAAAT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * * ** *
14222117 TTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGATGTGATTGTTGTATTTTTGTTGGTATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14222182 CAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14222247 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14222312 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14222377 CACATCATGTGCACACACCCCCCAGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * **
14222442 CCCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAAGGCACCAAAACATGCCCGAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGC
* * * *
14222507 CCAGCATGTGGTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCAGTATGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
14222572 TACACTGGGAATAAACTCCGTATGCCTAAGTCAA-CCACCAAAACGAGCGTGCAGGCGCTCAGCC
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCC
* * *
14222636 AGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGG-CTGGGTCCCCCTCTGTGTGCTGCCGATCC
517 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * ** * *
14222700 TGCTACCACAACCCTCAATCCAGTTTGACCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAA
581 TGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** * *
14222765 CTGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGATAGCCCGAAAGACGGGATGCGCAA
645 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14222830 GCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14222895 GTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14222960 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT
840 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* ** * *
14223020 TTTTTCAGAAGGAGTTTTCACCCCAAACTTTGTAGATGTGATCCTTGTATTTTT-TTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
14223084 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14223149 ATTTCAAACACTTTAATTGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14223214 GTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
14223279 CACATCATGTGCGCACACCCACCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
261 CACATCATGTGCGCACACCC-CCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * * *
14223344 TCTTCGACGATGCTCCGACGAAGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAG
324 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAG
* * * * *
14223409 CCCAGCATGTGCTACCGTAACCCTCGGTCTAGTCTGATCTTAGCCTGGGAATGAACTCCGTATGC
387 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
14223474 TTACACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTGCTCAGCT
452 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** * *
14223539 GGCCAAAGGGGTGGGATGTGCCAGAC-GGGATCGACCGAGTCCCCCTCTGCGTGCTGCCGATCCA
517 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
**
14223603 GCTGCTACAA-CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
582 GCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
14223667 CGATGAAA--A------GAGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
646 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14223724 CCGTGGATCTATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCAT
711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
14223789 TTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
776 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
14223854 ACTCGTTTTCTATTTTTGACGATTTTTGAAACTTTTTGCGGTTCAGGA-TTTTTAAAAT
841 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* * *
14223912 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTGTTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14223977 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14224042 AATTT-AGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAATTGCTCTTTAAGGGGG
131 -ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14224106 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTTCCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
14224171 GCACATCATGTGCGCATAGCCCCCCGACCCCCCGATTGCCGTAACCCCAATGCCGTCGGTCAGGT
260 GCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * *
14224236 TCTCCGGTGATGCTCCAACGATGGTGCCCCGATGAAAAAAAATGCAGCACCAGCGCATGCCTGAG
324 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG--GCACCAGCACATGCCCGAG
* * * * *
14224301 CCCAACATGTGCTGCCGCAACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCTTATGC
387 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
14224366 TTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGAGCGAGCCCTCAGCC
452 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * **
14224431 GGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTACGTGCTATCGATCCT
517 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * * *
14224496 GCTGCTACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCCAAGCCAAC
582 GCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * *
14224561 CGACGAAATGAGCGGGCGGACGGAAGGCCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAG
646 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14224626 CCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
14224691 TTTTATGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
776 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14224756 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGATTCGGGATTTTTTAAAAT
841 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * *
14224815 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTCGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14224880 C-AAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14224944 ATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGAT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14225009 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * *
14225074 CACATCATGTACGCACACCCCCCGGCCCCCCAATCGACGGAA-GCGATGGTGCACCGACGAAGAA
261 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCA--ATG--CCGTCG--G--
* * ** **
14225138 AAATACGGCACCGGTACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGGTCCGATC
318 ---T----CA--GGTTC-T-C-CG-G--C-G-A--TGCT-C--CGACGAT-GG-T-GCCCCGA-C
** ** * * * * * * * * *
14225203 TTAGACTGGGAAT-GAACTTCGTATGC-CTATG-TC-AACCCATGAAACGAGCGTACGGC--CGC
357 GAAGA---AAAATGGCAC--C--A-GCAC-ATGCCCGAGCCCA-G-CATGTGC-TGCCGCAACCC
* * ** ** * * * * ***** *
14225262 TCAG-CCGG-CCAGAGGGGTGGGA-TGCGCAAGTCGGGGA-TCGGTCAAGTCCCCCTCTGCG--T
410 TCGGTCTGGTCC-GA--TCTTAGACTG-GGAA-T---GAACTCCGT-ATG-CTTAGACTGGGAAT
* ** **** * * *
14225321 G--CTGCCG-AT-CTTGGTGCTGCAACCTTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCT
465 GAACT-CCGTATGCCT-AAG-T-CAACC--C-A--CGAAACGAGCGT-G-C-GGG--CG--CTC-
** ** * ** * * *** * *
14225382 GTATGCATAAGCCA-ACCGAC--GAAACG--AG-CGGGCGAACGGGCGGG-CGGGCACTACGT-C
513 --A-GC--CGGCCAGAGGGGCGGGATGCGCAAGCCGGG-GATCGGTCGGGTCCCCCTCTGCGTGC
* * ** * * * ** * ** * * *
14225439 GGCCAGAGAGACGGGATG-CGCAAGCCGT-GGATCGATAGGGTGGTAG-GTGGGTTTAGGCACAT
572 TGCC---GA-TCCTGCTGCCGCAA-CCCTCGG-TCGGTCCGATCTTAGACTGGG--AATG-A-A-
* * ** * **** * ********** *** * * *
14225501 CTTCATATTTCTATGTGCCAATGCC-ATTTTATG-GCTTGTAAATTAATAC-AATGGTCCCTTAA
626 CTCCGTATGCCTA--AGCCAA--CCGACGAAACGAGC--GGGCGGGCGGGCGGGCGGGCAC-TAC
** * ** * * * *** ** ** * *
14225563 GCC-TTCACGTGA-A-GTTTCATG-GCAAGACGACTCGTTTTCTA-TTTTTTCACGAT---TTTT
684 GCCGGCCA-GAGAGACG--GGATGCGCAAGCCG--TGGATCGATAGGGTGGT-A-GGTGGGTTTA
** * ** ** * * *** * * * ***** *
14225620 GAAAC-TTTTTGTGGTTCAGGATTTTTTAAAATG---TTTTTGGAAGGAGTTTTTGCCCCAAAC-
742 GGCACATCTTCATATTTCTGCA----TGCCAATGCCATTTTT--ATGG-CTTGTAAATTCATACA
* ** * * * * * *** * * * ** * ** * **
14225680 TTGGTGGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCAAAG
800 ATGGT-CCCTTAAGCCTT-CACGTGAAGTT-TCATG-GCAAGACGACTC-G-T----TTTCTATT
* * ** ** ***** **** * * *
14225744 CTT-ACAATATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGAC
855 TTTCACGAT-TTTTGAAACTTTTTGAGGTTCG-G-GATTTTTTAAAAT
** * ** ** * * * **** *
14225791 ACTTT---AATGG-CTACTGGCAGCAAACCT-GTAAAATC-TCAAATGCTCTT-TA-AAGGGGTG
1 TTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGT-AGA-CGT--GAT-C-CTTGTATTTTTGTTG
* * ** * * *** * * ** * ** * * * *
14225848 TG-AGTTCTC---AAGGTT-TGATGAGGGA-T--AGGGGGCCAATA-TAAGGGCCCA---G-TAC
59 -GCA-TGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * * *** * ** * *
14225900 CA--G-CACCCA-TT--G-CACATCATGTGCGCATACCCCCCGGC-CCCCTG----ATCGCCGGA
121 AAGTGTC-CCCATTTCAGACACTTTA-ATG-GC-TA-CTGGCAGCAAACCTGTAAAATC-TC-AA
* * ** ** ** * * * * ** * * *
14225953 A-CCCCAATACCGTCG-GTCAGGTTCTCTGACG-ATGCTCTGGCGAT-GGCGCCCCGACGAAGAA
179 ATGCTCTTTAAGGGGGTGTGA-GTTCTC-GAGGTTTGATGAGG-GATAGG-G----GGCCAA-TA
* * * * * ** * ** **
14226014 AAATGCGGCACCAGCA-CATGC-CCGA--GCCCAGT-ATGTGCTGCTGTAACCCTTGGTCCTATC
235 TAA-G-GGC-CAAGTACCA-GCACCCATCGCACA-TCATGTGC-GC-ACACCCCCCGG-CC-CCC
*** *** * * * ** * * *
14226074 CGATC-TTAG-ACTGGGAATGAAC-TCCGT-ATGCTTAGACTGG-GAATGAACTCCGTATGCCTA
291 CGATCGCCGGAAC-CCCAATG-CCGTCGGTCA-GGTT-CTCCGGCG-ATG--CTCCG-ACG-AT-
* ** ** * * * * *
14226134 AGT-CAACCC-ACGAA-ACGAGCGTGCGAGC-GCTCA-G-TCG-G-CCAG-AGGGGCGGGATG-C
346 GGTGC--CCCGACGAAGAAAAATG-GC-ACCAGCACATGCCCGAGCCCAGCATGTGC----TGCC
* * * ** * ** * * ** * * *
14226189 GCAAGCCGCGGATC-GATAGGGTGGTAG-GTGTGTTTAGGGACATCTACATATTTCTGT-G--TG
403 GCAACCCTCGG-TCTGGTCCGATCTTAGACTG-G--GAATGA-A-CTCCGTA-TGCT-TAGACTG
** *** * * * ** * * ** * **
14226249 CCAATG-ACATTTTTATGGCT-TGTAAATTCA-TACAA--TG-GT-C---CTTTAAGCCTTCACA
460 GGAATGAAC-TCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGC-CA
*** * * ** * *** * * * * * ** * *
14226304 TGAAGTTTC---ATG-GCAAGTC----AAC--TCGTTTTCTATTTTTCATGATTTTCAAAACAT-
522 -G-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG--CTGCCGATCCTG
* *** ** * *** *** ** * * * * * *
14226358 TTTATG--A-TTTGGGATTTTTTAAAAT-TT--TTTTGGAA-GGAGT---TTTGCC---CCCAAA
583 CTGCCGCAACCCTCGG--TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*** * * ** ******* ** ** ** ******* * * * *
14226410 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
646 CGACG-AAAC--GA-GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG--AGAGAC-GGGA-
** *** * * ** ***** *** * * ** *
14226475 TGTACAAGATTTTTTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACAC-T-TTAATGGCTACT
703 TGCGCAAG--CCGTGGATCGATAGGGTGGTAG-GT--GGGTTT-AGGCACATCTTCAT-ATTTCT
* * ** * * * *
14226537 GGCAGGAAACCTGTAAAAT-CTCAAATGCTCTTTAAGGGGGTGTGAGTTC-T-CGA-GG--CTTG
761 -GCATG---CC-----AATGC-C--AT--T-TTT-ATGGCTTGTAAATTCATACAATGGTCCCT-
*** * * * * * *** ***
14226596 ATAAGTGAT-AGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGGACATC-ATGTGAGCA
809 -TAAGCCTTCA-CGTG--AAGTTTCATGG-CAAG-A-C-G-A--C-TC-GTTTTCTAT-TTTTCA
****** ** **** * *****
14226658 C-AGCCCCCCAGCCCCCCTGATCG-TC-GGA---ACCCCAAT
860 CGA-TTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
**** * * ** * * ** *** ****
14226694 GCCGTCGGTCAGG-TTCTTTGGCGATCCTCCGACGATGGT-GCCCCGA-CGAAG-AAAAATG-TG
1 TTTTTCGG-AAGGAGT-TTTGGC---CC-CAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTG
* * ** * ** ** *** * * *
14226754 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT-C-CGATCTT-AG
59 GCA--TGCACA------A---AAAAAT-T-CAG-CTAAAAACTCGAAGT-GTACAAGATTTTGTG
** ** * * * *** * * ** * ** * * *** *
14226816 A-C-TGGGAATGAACTCCGTATGCCTAAGCCAAAAGAC-GAAACGAGCGGCCGGGCGGGCGGGCG
109 ACCATTTGAA--AA--AAGTGTCCCCATTTC-AGACACTTTAATG-GC-TACTGGC-AGCAAACC
* * ** * ** ** * **** * *
14226878 GGCACTA-CGC--CGGC-C-AGAGAGACGGGATGTGCAAG--CT-GTTAATCGAT-AGGGTGGTA
166 TGTAAAATCTCAAATGCTCTTTA-AG--GGGGTGTG--AGTTCTCGAGGTTTGATGA-GG-GATA
* ** * * *** * * ***
14226934 GGTGGG----T-TTA-GGCACATCTTCATATTTCTGCAT-GC-CA--A--TGC-CATTTTTATGG
224 GG-GGGCCAATATAAGGGC-CAAGTAC-CAGCAC-CCATCGCACATCATGTGCGCA----CACCC
** ****** *** * * * * * * * *
14226986 CTTGTAAATTC-ATACAATGG-TCCCTTAA-GCCTTCACGTGAAGTT-TCATGGCAAGACGACT-
281 CCCGGCCCCCCGAT-CGCCGGAACCC-CAATGCCGTC-GGTCAGGTTCTC-CGGC--GATG-CTC
* * * ** * ** * *** * * * ***** *
14227046 CGTTTTCTAT-TTTTCACGATTTTAA-AAAATTTTTACGATTCGAGATTTTTTAAAATTTTTTCG
339 CG---ACGATGGTGCCCCGA--CGAAGAAAAATGGCACCA-GC-ACA---TGCCCGA-----GC-
** * ** * * * * * * * * * * * **
14227109 GAAGGA-GTTTTGGCCCCAAACTTCGTAGACGTGATCCTTTTATTTTTG--TTGGCATGCACAAA
388 CCAGCATGTGCT-GCCGCAACCCTCG--GTC-TGGTCC---GATCTTAGACTGGGAATGAAC-TC
*** * * * * ** ** * * ** *
14227171 AAAATTCAGCTAAAAACT-CGAAGTGTAC-AAG-AT---TTTGT-GA-CCATTTGAAAAAAGTGT
445 CGTA-T--GCT-TAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCA--CGAAACGAGCGT
** ** * * *** ** * * *** *** * *
14227228 -C-CCCATTTCAGAC-ACTTTAATGGC--TACTAGCAGCAAACCTGTAAAATC--TCAAAT-GCT
503 GCGGGC-GCTCAGCCGGCCAGAGGGGCGGGA-T-GC-GCAAGCC-G-GGGATCGGTCGGGTCCCC
* * * * * * * * ** * ** * * * * * **
14227285 CTTTAAGGGGGTTTG-AGTTCTCAAGGTTTGATG-AGCGATAGG--GGGCCAAT-ATA-AGTGCC
562 CTCT--GCGTG-CTGCCGATC-C--TG-CTGCCGCAACCCTCGGTCGGTCCGATCTTAGACTGGG
* * * *** * ** * * *
14227344 AA-GTACCAGCTCC-CATCGCACATCATGTGCGCACACCCCCCGGCCGCCCCGACCGCCCCGACC
620 AATG-A--A-CTCCGTAT-GC-C-T-A--AGC-CA-A----CC-GACGAAACGAGCGGGCGGGCG
** * ** * * * *** * * * * * *
14227407 ACCGGAAC-CCCAATGTCGCCGGTCAG-GTTCTCCGGTGATGCTC-CGGCGAT-GCTCCGACGAT
668 GGCGG-GCGGGCACT-ACGCCGGCCAGAG--AGACGG-GATGCGCAAGCCG-TGGAT-CGA-TAG
*** * **** * * *** * **
14227468 GGTGCCCCGATGAAGAAAAAAGCGGCACCAGC-ACATGCCAGAGCCTAGCATGTGC--TGCCACA
725 GGTG-GTAGGTG--G-GTTTA--GGCA-CATCTTCAT---A-TTTCT-GCATG-CCAATGCCATT
**** ** ** * * ** * * * *
14227530 ACCCTCGGTCCAGTCTGATGTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATGATCT
777 TTTAT-GG-CTTGT-AAAT-TCATAC----AATGGTC-CCTTAAGCCTT-CAC-GTGAA-G-T-T
* * * **** * *** * ***** * ** ***** ** **
14227594 CCGTATGCCTAAGTCAAC-ACACGAAAACGA-GCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCAA
828 TC--ATGGC-AAG---ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGG
* * * ****
14227656 GATGTGTGAGCCG
887 GATTTTTTAAAAT
**** ** * * * * * * * ** * *
14227669 AGGATCGG-CCGTGTCCCCCTCTGTGTGCTACCGATCCTGCTA-CCGCAACCCTCGGTCCGATTT
1 TTTTTCGGAAGGAGT-----T-T-TG-GC-CCCAAACTTGGTAGACGTGATCCT-TGT---ATTT
* * * * ** ** * * * ** * ***** *
14227732 GATCTTAG-A-CCGGGAATGAACTTCGTATGCCTAAGCCAAC-CGACG-AAACGAGCGGGCGGGC
53 -TTGTTGGCATGC-ACAAAAAAATTC--A-G-CTAA--AAACTCGAAGTGTACAAGATTTTGTG-
** * * * * * * * * * *
14227793 ACTACGA-CGGCCAAAGAGACGGGATGCGCAAGCCGTGGATC-GATAGGTGGTAGGTGGGT-TTA
109 AC--C-ATTTG--AAA-A-AAGTG-T-C-C---CCAT--TTCAGACA-CT-TTA-ATGGCTACT-
* * *** * * * ** * * *
14227855 GGCA-C-ATCTTCATCT-TTGTGCCTGCCAATGC-CATTTTTATGGCTTGTAAATTCATACAATG
155 GGCAGCAAAC--C-TGTAAAAT--CT-CAAATGCTC--TTTAAGGGGGTGTGAGTTC-T-CGA-G
**** * *** * * * * ** * * *** *** **
14227916 GTCCCTTAAGCCTTCA---CGTCAAGTTTCATTG-CAAG-ACGA-CTCGTTTTTTATTTTTCATG
209 GTTTGATGAGGGAT-AGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCA--CATCATG
*** * **** ** * ****** **** * *
14227975 ATTTTCAAAACTTTTTACGG--TTCGGATTTTTTAAAATTTTTTTGGAATG-AGTTTTGGTCCCA
270 -TGCGC-ACAC--CCCCCGGCCCCCCGA-TCGCCGGAA-----CCCCAATGCCG--TCGGT--C-
** * * * * *** * * ** * * **
14228037 AACTTGGT-AGACG-TGATCCTTGCATTTTTGTTGGCATGCAC-AA-AAAAAT-TCAGCTAAAAA
320 AGGTT-CTCCGGCGATGCTCC--G-A-CGATGGTGCCCCG-ACGAAGAAAAATGGCA-C-CAGCA
* ** * * * * * *** * * *
14228097 CTTG-AAGTGTACAAG-ATTTTG-TGACCATTTGAAAAAGT--GTCCCCAT-TTCAGACACTTTA
377 CATGCCCGAG-CCCAGCA-TGTGCTG-CC----GCAACCCTCGGT---C-TGGTCCGA-TC-TT-
* ** ** ** * **
14228156 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTGTGAGTTCTTGAGG
428 A--G--ACTGG--G--AA--TG--AACTC-CGTATG--C-TTAGACTGGGAATGA--AC-T-CCG
* * * ** * ** * * ** * * * * *
14228220 TTTG-ATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCA-CC-GCACATCATGT
473 TATGCCTAAGTCA-A----CCCACGA-AACGAG-C--GTGCGGGCGCTCAGCCGGC-CA-GAGGG
** ** * ** *** ** * *
14228281 GCGCACACCCCCCGGCCCCCTTGATC-GTCGGAACCCCAATGCTGCCGGTTAGGTTCTCCAACGA
527 GCG-GGATGCGCAAG--CCGGGGATCGGTCGGGTCCCC-CT-CTG-C-G-T--G--CTGC--CGA
* * * * * ** * *
14228345 TGCT-CTGACG-ATGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCT-AGAA
578 TCCTGCTGCCGCA----ACCCT--CG--G-----T-CGG-TCC-G---AT--CTTAGACTGGGAA
** ** ** ** * ** * ** ** * *
14228407 TGTGCTGCCACAACCCTCGGTCCAGTCCGATC-TTA-GA-CTGGGAATGAAC-TCCGTATGCTTA
622 TGAACT-CCGTATGCCTAAG-CCA-ACCGA-CGAAACGAGC-GGG--CGGGCGGGCG--GGC--G
* * * ** * * * *
14228468 AGCTAACCAACGAAACGAGCGGGTG-GGCGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGT
676 GGC--A-CTACG--CCG-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
14228532 GGGTTTACGCACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACA
735 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14228597 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTAGGATT
800 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
14228662 TTTGAAACTTTTTGCGGTGCGGGATTTTTTTAAATT
865 TTTGAAACTTTTTGAGGTTCGGGA-TTTTTTAAAAT
* * * **
14228698 TTTTTC-GAAGGAGTTTTGGCCCCAAATTTGGTAGATGTGATCCCTGTATTTTT-TTGGTGTGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14228761 CAAAAGAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14228826 ATTTCTGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
14228891 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * * *
14228956 TATATCATGTGTGCACACCCCTCGGCCCCCTCGACCGCTGGAACCCCAATGCCGCCGGTCAGGTC
261 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
14229021 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCAAATGCCCGAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-G-CACCAGCACATGCCCGAGC
* * * * ** * * *
14229086 CCAGCATTTACTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGATTGAACTCTGTATGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
14229151 TAGATTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14229216 GCCAGAGGGGCAGGATGCACGAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCTTG
518 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
14229281 TTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACC
583 CTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
14229346 GACGAAAAGAGCGGGCGGGCGGGCGTGCGGTCAGTACGTCGGCAAGAGAGACGGGATGCACAAGC
647 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
14229411 CATGCATCGATAGGGTGGTAGGTGGATTTAGGCACATCCTAATATTTCTGCATGCCAATGCCATT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14229476 TTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
14229541 CTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTT-ATGGTTCGGGATTTTTTAAAAT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * * * *
14229599 TGTTTCGGAAGGTGTTTTGGCCCCAAACTTTGTAGACATAATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14229664 CAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14229729 ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTTAAATGCTTTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14229794 GTGAGTTCTCGAGGTTTGAGGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14229859 CACATCATGTGCGCACACCCCCAGGCCCCCCGATTGCCGGAACCCCAATGCCGTCGGCCAGCTTC
261 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
14229924 TCCGGTGATGCTCCGGCGATGGTGCCCTGATGAAGAAAAATGAGGCACCAGCACATGCCCGAGCC
326 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGCC
*
14229989 CAGCATGTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
389 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
14230054 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGA
454 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * * * *
14230119 CCAGAGGGGTGGGATGCGCAAGCTGGGGATCGACCGAGTCTCCCTCTGCATGCTGCCTATCCTAC
519 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * ** * *
14230184 TACTGTAACCCTCGGACTGGTCCGATCTTAGACTATGAATGAATTCCGTATGCCTAAGCCACCCG
584 TGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
14230249 ACGAAACGAGCGGGCAGGCGGG-GGGTGGGCACTACGCCGGCTAGAGAGGCGGGATGTGCAAGCC
648 ACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * * *
14230313 GTGGATTGATGGGGCGATAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCGTTT
713 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14230378 TTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGAC
778 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14230443 TCGTTTTCTCTTTTTCACGATTTTGGAAACTTTTT-ACGGTTCGGGATTTTTTAAAAT
843 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* *
14230500 TTTTTCGGAAGGAGTTGTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14230565 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCC
66 C-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14230630 CATTTCAAACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14230695 TGTGAGTTGTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
14230760 GCACAACATGTGCGCACACCCCCCCGGCCCTCTCAATCACCGGAACCCTAATGCCGTCGGTTAGG
260 GCACATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
** * * *
14230825 TTCTCCTACGATGCTTCGACGATGCTGCCTCGACGAAGAAAAATGCGGGCACCAGCACATGCCCG
323 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT---GGCACCAGCACATGCCCG
* * *
14230890 AGCCCAGCATGTGCTGCCGTAAACCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTAT
385 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
14230955 GCTTAGACTGGGAAAGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
450 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * *
14231020 TCGGCCAGAGGGGCGTGATGCGCAAGATGGGGATTGGCCGGGTCCCCCTCTGTGCGCTGTCGATC
515 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * *
14231085 CTGCTACTGCAATGCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
580 CTGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * *
14231150 ACTGACGAAACAAAAAGGGTGGGCGGGCGGGCGTGCACTACGCCGGCCACAGAGACGGGATGCGC
644 ACCGACGAAAC-GAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ***
14231215 AAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
708 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14231280 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACATGAAGTTTCATGGCAAG
773 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
14231345 ACAACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT-ACAGCTCGAGATTTTTTAAAAT
838 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * * *
14231407 TTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
14231472 TAAAAACATTCAGCTAAAAACTCGAAATGTACAAGGTTTTGTGACAATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14231537 ATTTCAAACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14231602 GTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
14231667 CACAACATGTGCGCACACCCCCCCGGCCCTCTCAATCACCGGAACCCTAATGCCGTCGGTTAGGT
261 CACATCATGTGCGCACA-CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
** * * *
14231732 TCTCCTACGATGCTTCGACGATGCTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
324 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAG
* * * *
14231797 CCCAGGATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGC
387 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * *
14231862 TTAGACTGGGAAAGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTC
452 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * * * *
14231927 GGCCAGAGGGGCGTGATGCGCAAGATGGGGATTGGCCGGGTCCCCCTCTGTGCGCTGTCGATCCT
517 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * ** * *
14231992 GCTACTGCAATGCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
582 GCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
14232057 TGACGAAACAAAGAG-GGGTGGGCGGGCGGGCGTGCACTACGCCGGCCACAGAGACGGGATGCGC
646 CGACGAAAC---GAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ***
14232121 AAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
708 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
14232186 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACATGAAGTTTCATGGCAAG
773 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14232251 ACAACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT-ACGGCTCGAGATTTTTTAAAAT
838 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* *
14232313 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
14232378 CAAAAACATTCAGCTAAAAAATCGAAATGTACAAGGTTTTGTGACAATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14232443 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAAGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14232508 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCGGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
14232573 CACATCATGTGCGCACACCCCCTGACCCCCCCAATCGTCGAAACCCAAATGCCGTCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * * **
14232638 CTACGGTGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATACGGCACCGGCACATGTCTAAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGC
14232703 CCAGCATGTGCTGCCGCAA--C-C---C---T-CGA---T---CT--G---G---TCCG-AT-CT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
14232742 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCGTGCAGGTGCTCAGACG
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14232807 GCCAGAGGGGCGGGATGCGAAAGCCTGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCTTG
518 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* ** * * * * *
14232872 TTGCTACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGACAACC
583 CTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
14232937 GATGAAACGA--------GCGGGTGGGCGGGCACTACACCGACCAGAGAGACAGGATGCGCAAGC
647 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
14232994 TGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14233059 TTTATGGCTTGTAAATTCATACAGTGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * * *
14233124 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGTTTCGAGATTTTTTAAAAT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* * * * *
14233182 TTTTTCAGAAGGGGTTTTGGCCCCAAGCTTGGTGGACGTGATCCTT-TATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14233246 CAAAAAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
14233311 ATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14233376 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14233441 CACATCATGTGCGTACACCCCCCTGGGCCCCCGATCGCCGGAACCCCAATGTCGTCGTTCAGGTT
261 CACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
14233506 CTCCGGCGA---T------AT--TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGC
* * * * * * *
14233560 CTAGCATGTGCTGCCACAACCCTCAGTCCGGTCGGCTCTTAGACTGGGAATGAACTCTGTATGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
14233625 TAGACTGGGAAAGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGGGCGTTGAGCCA
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
14233690 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTA
518 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
14233755 CTACCGTAACCCTCGGTCTGATCC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
583 CTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
14233819 GACGAAACGAGCGGGCGGGCGGGCAGGCAGGCACTACGTCGGCCAAAGAGACAGGATACGCAAGC
647 GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
14233884 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
14233949 TTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14234014 CTCGTTTTCTATTTTTCACGA-TTTTCAAAATTTTTTACGGTTCGAGATTTTTTAATAT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * * *
14234072 TTATTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
**
14234137 CAAAAAAATTCAAATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
14234202 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
** *
14234267 GTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
14234332 CACATCATGTGCGCACACCCCCCCAGCGCACCCGATCGTCGGAACCCAAATGCGGTTGGTCAGGT
261 CACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* ** *
14234397 TCTCCAGCGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATATGGCACCAGCACATGCCTGA
324 TCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAG-AAAA-ATGGCACCAGCACATGCCCGA
* * **
14234461 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATG
386 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
14234526 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCGTGCGGGCGCTCAGC
451 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
14234591 CGGTCAGAGGGGCGGGATGTGCAAGCCGACGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
516 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * ** *
14234656 TATTGCTGTAACCCTTAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
581 TGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14234721 CCAATGAAATGAGCGGTCGGGCGGGCGGGCGAGCATTACGCCGACCAGAGAGACGGGATGCGCAA
645 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
14234786 GCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
14234851 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14234916 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTT-ATGTTTCGGGATTTTTTTAAACT
840 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGA-TTTTTTAAAAT
* * *
14234977 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTACACATGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14235042 CAAAAAAAATCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14235107 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGG
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
14235172 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14235237 CACATCATGTGCGTACACCCCCTCGGCCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTT
261 CACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
** * * * *
14235302 CTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGTACCAGCAGATGCTCGAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGAGC
* *
14235367 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
14235432 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAACGTGCGGGCGCTCAGCCG
453 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14235497 GCAAGAGGGCCGGGACGCGCAAGCCGGGGATCGG-CTAGGTCCCCCTCTACGTGCTGCCGATCCT
518 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * * * *
14235561 GCTGTTGAAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAT
582 GCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * * **
14235626 CGACGAAACGAGCAGGCGAGC-TACTGGGTGGGCACTATGCCAGCCAGAGAGATAGGAT-CGCAA
646 CGACGAAACGAGCGGGCGGGCGGGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
14235689 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
710 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
** *
14235754 TTTTTATGGCTCATAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGAC
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
14235819 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-ACAGTTCGGGATTTTTTAAAAT
840 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * * *
14235879 TTATTCGGAATGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
14235944 C-AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14236008 ATTTCAGACATTTTAATGGCTTA-TGGCAGCAAACCTGTAAAATCTAAAATGCTTTTTAAGGGGG
131 ATTTCAGACACTTTAATGGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
14236072 TGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** * * *
14236137 GCACATCATGTGTGCACACCCACCCCGGCCCCCCCAATCATCGAAACCCCAATGTCGTCGGTCAA
260 GCACATCATGTGCGCACA-CC-CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * **
14236202 GCTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGATGAAAAATACGGCACCAGCACATGGCTT
322 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACAT-GCCC
* * * *
14236267 GAGCCTAGCATGTGCTCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCA
384 GAGCCCAGCATGTG--CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* ** * *
14236332 TATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAATAAGTGTACGGGCGCT
447 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
14236397 CAGCCAGCTAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTTCCCCCTCTGCATGCTGCC
512 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG-TCCCCCTCTGCGTGCTGCC
* * * * **
14236462 AATCCTGCTGCCCCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCAATGCCTAA
576 GATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
14236527 GCCAACCGATGAAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGATACGGGATG
640 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
14236588 CGCAAGCTGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGGCAA
705 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
14236653 TGTCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
770 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
14236718 AAGTC-ACCTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTTGGGATTTTTTAAA
835 AAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAA
14236781 AT
898 AT
* * * *
14236783 TTTTTTGGAAGGAATTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAGGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14236848 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14236913 ATTTCAGAGACTTTAACGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14236978 GTGAGTTCTTGAGGTTTGATGA-GGATTAGGGGG-CAATATACAGGGCCAAGTACCATCACCCAT
196 GTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCAT
* * * * *
14237041 TGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTGAGG
259 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * ** *
14237106 TTCTCCGGCGATGCTTCGATGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACGTGCCCGA
323 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCGA
* * *
14237171 GACCAGCATGTGCTGCCGCAACCCTCAGT-TCGGTCCGATCTGAGACTGGGAATGAACTCCGTAT
386 GCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
14237235 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAG
450 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** ** *
14237300 CCAGCCAGAGGGGTGGGATGCGCAAGCTGGGGGTCGACCGCATCCCCCTCTGCGTGCTGTCGATC
515 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * ** * * *
14237365 CTGCTATCGTAACCCTCGATCCAATTCGATCTTAGACAGGGAATGAACTCCATATGCCTAAGCCA
580 CTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14237430 ACCGACGAAACGA------------GCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGTGCA
644 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14237483 AGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGCC
709 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14237548 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAACA
774 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
14237613 CGACTCGTTTTTTATTTTTCTCAATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTTAAAT
839 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAAT
* * *
14237674 TTTTTCAGAAGGAGTTTTGGCCCCAATCATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
14237739 CAAAAACATTCTGCTAAAAACTCCAAGTGTACAATATTTTGTGGCCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14237804 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAAGGGGG
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGG
* *
14237869 -GTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
14237933 GCACATCACGTGCACACACCCCCAACCCCGGTCCCCCTGATCGTCGAAACCCTAATGCCGCCGAT
260 GCACATCATGTGCGCACA---CC--CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * ** * * * *
14237998 CAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCCGGCCATGAAAAATGCAGCACAAGCACATGC
319 CAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG--GCACCAGCACATGC
* ** *
14238063 CCGGGCCCAGCATGTGCTAG-CGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTTC
382 CCGAGCCCAGCATGTGCT-GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
*
14238127 GTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGC
446 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* ** * * * *
14238192 TCAACCAACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTTCTCCTTTGCGTGCTGCC
511 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* ** * *
14238257 GATCCTGCTGCCGTAACCCTTTGTCCGGTCCGATCTTAGACTTGGAATGAACTTCGTATGCCTAA
576 GATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
14238322 GCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATG
640 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
*
14238387 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAA
705 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
14238452 CGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGG
770 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
14238517 AAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAAT
835 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* * * * * *
14238582 TTTTTTGAAAGGATTTTTGGCCCCAAACTTAGTTGACGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14238647 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAACTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14238712 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAAGGGGG
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGG
*
14238777 -GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * * *
14238841 GCACATCACGTGCACACACCCCCCACCCCCAGCCCCTCGATCGTCGAAACCCCAATACCGCCTGT
260 GCACATCATGTGCGCACA-----C-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* ** *
14238906 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATGC
319 CAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGC
* * * * *
14238971 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGGTCTTAGACTGGGAATGAACTCCA
382 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
14239036 TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
447 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* ** * *
14239101 CAGTCGGCCAGAGGGGTAGGATGGGCAAGCCGGGGAT-GGATCGGGTCCCCCTCTGCATGCTGCC
512 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCC
* * ** * * *
14239165 GATCCTACTACCGCAACCCTCATTCCGAT-CTATCTTAGATTGGGAATGAACTCCGTATGCCTAA
576 GATCCTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
14239229 GCCAACCGACAAAACGAGCAGTCGGGCGGGCGGGCAGGCACTACGCTGACCAGAGAGACGAGATG
640 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
14239294 CGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAA
705 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
14239359 TGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGC
770 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * **
14239424 AAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCAAGA-TTTTTAAAAT
835 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
* * * *
14239488 TTTTTCGGAAGGATTTTTGGCCCCAAAGTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGAA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
14239553 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATAACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14239618 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * **
14239683 GTGGGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACAAATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** *
14239748 TACATCATGTGCGCACACCCCTCCCGGCCCCCTCGATCGTCGGAACCTAAATGCC-TCCGGTCAA
261 CACATCATGTGCGCACA-CCC-CCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGT-CGGTCAG
* ** * * *
14239812 GTTCTACGATGATTCTCCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATACCCG
322 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT--GGCACCAGCACATGCCCG
* * * * * * ** *
14239877 AGCCTAGCATGTGCCGCCGTAACCCTCGATCCGATCCGATCTTAGACTATGAATGAACTCCATAT
385 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
14239942 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAA
450 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * **
14240007 CCGGCCAGAGGGGAGGGATGCGTAAGCCGAGGATCGGCCGAGTCCCCCTCTGCATACTATCGATC
515 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
14240072 TTACTGCCGCAACCCTTGGTCCGGTCCGATCTTAGAAC-AGGAATGAACTCCGTATACCTAAGCC
580 CTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14240136 AACCGACGAAACGAGCGGGCGGGTGGACGAGCGGGCATTACACCGGCCAGAGTGAAC-GGATGCG
643 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG-ACGGGATGCG
* * *
14240200 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATG
707 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
14240265 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAA
772 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
14240330 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTTGGGATTTTTTAAAAT
837 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
** * *
14240393 TTTTTTTGAAGGAG-TTTAGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
14240456 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
14240521 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGAT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
14240586 GTGAGTTCTCGAGGTTTGATGAGGCATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
14240650 CACATCATTTGCATACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTT
261 CACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
*
14240715 CTCCGGC-AT--T--G-C--T-CTG----G-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
325 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA--TGGCACCAGCACATGCCCGAGC
* * * * * *
14240766 CTAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACGGGGAATGAACACCGTATGCT
388 CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
14240831 TAGACTAGGAATGAACTCCGTAT
453 TAGACTGGGAATGAACTCCGTAT
14240854 ACGGAGTTCA
Statistics
Matches: 19508, Mismatches: 3424, Indels: 2276
0.77 0.14 0.09
Matches are distributed among these distances:
857 54 0.00
859 3 0.00
860 1 0.00
863 1 0.00
865 1 0.00
866 1 0.00
867 1 0.00
868 258 0.01
869 262 0.01
870 61 0.00
871 211 0.01
872 211 0.01
873 255 0.01
874 430 0.02
875 361 0.02
876 85 0.00
877 174 0.01
878 98 0.01
879 179 0.01
880 8 0.00
881 11 0.00
882 47 0.00
883 133 0.01
884 4 0.00
885 1 0.00
886 112 0.01
887 7 0.00
888 218 0.01
889 286 0.01
890 322 0.02
891 920 0.05
892 344 0.02
893 470 0.02
894 75 0.00
895 14 0.00
896 357 0.02
897 72 0.00
898 100 0.01
899 497 0.03
900 652 0.03
901 863 0.04
902 2010 0.10
903 2390 0.12
904 1351 0.07
905 1165 0.06
906 1222 0.06
907 633 0.03
908 748 0.04
909 23 0.00
910 17 0.00
911 21 0.00
912 13 0.00
913 15 0.00
914 10 0.00
915 4 0.00
917 4 0.00
918 2 0.00
919 5 0.00
920 8 0.00
921 10 0.00
922 14 0.00
923 24 0.00
924 20 0.00
925 6 0.00
926 3 0.00
927 10 0.00
928 4 0.00
929 5 0.00
930 11 0.00
931 11 0.00
932 14 0.00
933 25 0.00
934 21 0.00
935 28 0.00
936 24 0.00
937 33 0.00
938 21 0.00
939 28 0.00
940 24 0.00
941 20 0.00
942 25 0.00
943 16 0.00
944 29 0.00
945 9 0.00
946 9 0.00
947 10 0.00
948 1 0.00
949 6 0.00
950 11 0.00
951 7 0.00
952 9 0.00
953 9 0.00
954 24 0.00
955 22 0.00
956 18 0.00
957 20 0.00
958 7 0.00
959 12 0.00
960 38 0.00
961 12 0.00
962 20 0.00
963 40 0.00
964 29 0.00
965 18 0.00
966 46 0.00
967 13 0.00
968 30 0.00
969 16 0.00
970 26 0.00
971 33 0.00
972 17 0.00
973 38 0.00
974 45 0.00
975 23 0.00
976 31 0.00
977 24 0.00
978 19 0.00
979 21 0.00
980 12 0.00
981 9 0.00
982 6 0.00
983 7 0.00
984 5 0.00
985 2 0.00
986 4 0.00
987 5 0.00
988 15 0.00
989 15 0.00
990 18 0.00
991 18 0.00
992 13 0.00
993 3 0.00
994 12 0.00
995 13 0.00
996 7 0.00
997 7 0.00
998 11 0.00
999 13 0.00
1000 5 0.00
1001 4 0.00
1002 5 0.00
1003 8 0.00
1004 6 0.00
1005 5 0.00
1006 2 0.00
1007 5 0.00
1008 7 0.00
1009 16 0.00
1010 8 0.00
1011 12 0.00
1012 18 0.00
1013 6 0.00
1014 6 0.00
1015 9 0.00
1016 7 0.00
1017 5 0.00
1018 2 0.00
1019 1 0.00
1020 9 0.00
1021 8 0.00
1022 2 0.00
1023 2 0.00
1024 277 0.01
1025 274 0.01
1026 257 0.01
1027 209 0.01
1028 154 0.01
1029 218 0.01
1030 427 0.02
1031 330 0.02
1032 270 0.01
1033 159 0.01
1034 161 0.01
1035 196 0.01
1036 198 0.01
1037 195 0.01
1038 226 0.01
1039 193 0.01
1040 148 0.01
1041 139 0.01
1042 129 0.01
1043 101 0.01
1044 90 0.00
1045 76 0.00
1046 60 0.00
1047 71 0.00
1048 65 0.00
1049 85 0.00
1050 92 0.00
1051 275 0.01
1052 451 0.02
1053 184 0.01
1054 551 0.03
1055 308 0.02
1056 558 0.03
1057 153 0.01
1058 102 0.01
1059 415 0.02
1060 268 0.01
1061 31 0.00
1062 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGGCACCAGCACATGCCCGAGCCCA
GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
CCGCAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAAT
Found at i:14220781 original size:26 final size:26
Alignment explanation
Indices: 14220752--14220804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14220742 CCGGTCCGAT
* *
14220752 CTTAGATTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14220778 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14220804 C
1 C
14220805 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14222580 original size:26 final size:26
Alignment explanation
Indices: 14222544--14222596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14222534 CCGGTCCAAT
* *
14222544 CTTAGACTGGGAATGAACTCAGTATG
1 CTTACACTGGGAATAAACTCAGTATG
*
14222570 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCAGTATG
14222596 C
1 C
14222597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCAGTATG
Found at i:14224892 original size:902 final size:899
Alignment explanation
Indices: 14220036--14225104 Score: 7329
Period size: 902 Copynumber: 5.6 Consensus size: 899
14220026 CGGTTCGATT
* * * * * *
14220036 TTAGACTGGGAATAAACTCCGTATGCCCAAACCAACCGATGAAACGAGAGGGCGGGCGGGCGGGT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-GCG-
** * *
14220101 GAGCACTACACCGGCGAGAGAGATC-GGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGT
64 G-GCACTACGTCGGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
14220165 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14220230 TCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCGTTTTCTATATTTCATGA-TTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* **
14220294 AAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
257 -AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14220359 AGAAGTGATCCTTGTATTTTTGTTGGTATGCATAAAAAAATTCAACTAAAAACTCGAAGTGTACA
321 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
14220424 AGATTTTGTGAACATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14220489 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14220554 CCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAACACCCCGA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGA
* * **
14220619 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCCCCGATGATGCTCCGGTGATGGTGCCCCGACGA
581 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * *
14220684 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGGTGTCGCAACCCTCAGTCCGGTCC
646 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * *
14220749 GATCTTAGATTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
14220814 CCCACAAAACAAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGG
776 CCCACGAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * *
14220879 CTGGTTTCCCCTCTGCGTGTTGCCGATCCTACTACCACAACCCTTGGTCTAGTCTGACC
841 CTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
* *
14220938 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG--GGC
* * *
14221003 GGGCACTACG-CTAGCCCGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
63 GGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
14221067 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
14221132 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * ** *
14221197 TAACTTTTTTCGGTTTGGGATTTTTTAAAATTTTTTCGGTAGGAGTTTTCACCCCCAAACATGGT
257 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGCCCCAAACTTGGT
*
14221262 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
321 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
14221327 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
14221392 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
14221457 CCAATATAA-GGCCAAGCACCAGCACCCATCGCACATCATGTGCGCGCACCCCCGGGCCCTCCGA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGA
* * ** * *
14221521 TCACCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGACGA
581 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
14221586 A-AAAAATGTGACTCCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
646 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* * * * *
14221650 GATCTTAGACTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGCACGCCTAAGTGAA
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
14221715 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
776 CCCACGAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* ** * * * * *
14221780 CCGGGTCCCCCTCTATGTGCCGCTGATCCTGCTGCCATAACCCTTGGTCTGGTATGATC
841 CTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
*
14221839 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---------AGGGGCGGG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCGGG
* * * *
14221895 CACTACGCCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14221960 GCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
14222025 TTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATATTTCATGA-TTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-
* * * ** *
14222089 CTTTTTACGGTTCGGAATTTTTAAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGAT
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
** * *
14222154 GTGATTGTTGTATTTTTGTTGGTATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14222219 TTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14222284 TAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14222349 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCC-AGCACCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA-C-CCCCCGATC
* *
14222413 ACCGGAACCCCAATGCCGCCGGTCAGGTTCCCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
583 ACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
** * * *
14222478 AAAAATAAGGCACCAAAACATGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCGGTCCGGTCCAA
648 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* *
14222543 TCTTAGACTGGGAATGAACTCAGTATGCTTACACTGGGAATAAACTCCGTATGCCTAAGTCAA-C
713 TCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14222607 CACCAAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGGC
778 CA-CGAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
* * ** ** * *
14222672 TGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAATCCAGTTTGACC
842 TGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
* * *
14222730 TTATACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-GGGC
* * * *
14222795 GGGCACTACGAT-AGCCCGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGT
63 GGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14222859 TTAGGCACATCTTCATATTTCTACATGCCAATGCCAGTTTTATGGCTTGTAAATTCAGACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14222924 TCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* ** *
14222989 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCACCCCAAACTTTGTA
257 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
14223054 GATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
322 GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14223118 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14223183 CCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14223248 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCGGCCCCCTCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGACCCCC-CG
** * *
14223313 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGAAGGTGCCCCGACG
580 ATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * * **
14223378 AAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTC
645 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
14223443 TGATCTTAGCCTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCTGTATGCCTAAGTCA
710 CGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
14223508 ACCCATGAAACGAGTGTA-CGGGTGCTCAGCTGGCCAAAGGGGTGGGATGTGCCAGAC-GGGATC
775 ACCCACGAAACGAGCG-AGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
14223571 GACCGAGTCCCCCTCTGCGTGCTGCCGATCCAGCTGCTACAA-CCTCGGTCCGGTCCGATC
839 GGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
* * * *
14223631 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA--A--GAGCAGAC-GGGCGGG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCGGG
*
14223691 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14223756 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14223821 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
*
14223886 TTTTTGCGGTTCAGGA-TTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGAT
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGAT
* *
14223949 GTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14224014 TTTGTTACCATTTGAAAAAAGTGTCCCCAATTT-AGACACTTTAATGGCTACTGGCAGTAAACCT
390 TTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
14224078 ATAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
14224143 ATATAAAGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCATAGCCCCCCGACCCCCCGATT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCGATC
* * * ** * * *
14224208 GCCGTAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCCCGATGAAA
583 ACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * * * *
14224273 AAAAATGCAGCACCAGCGCATGCCTGAGCCCAACATGTGCTGCCGCAACCCTTGGTCCGGTTCGA
648 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* **
14224338 TCTTAGACTGGGAATGAACTCCTTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * ** ** *
14224403 CACGAAACGAGTGAGCGAGCCCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGTT
778 CACGAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT
* ** *
14224468 GGGTCCCCCTCTACGTGCTATCGATCCTGCTGCTACAACCCTCGGTCTGGTCTGATC
843 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
* * * * *
14224525 TTAGACTGGGAATGAACTTCGTACGCCCAAGCCAACCGACGAAATGAGCGGGCGGACGGAAGGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG--GG-C
* * *
14224590 GGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTT
63 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
14224655 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGT
128 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14224720 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
193 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
14224785 AACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
258 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14224850 ATGTGATCCTTGTATTTTTGTTCGCATGCAC-AAAAAATTCAGCTAGAAACTCGAAGTGTACAAG
323 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14224914 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
14224979 TGTAAAATCTCAAATGCTCTTTAAGAGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14225044 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCC
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCC
14225105 AATCGACGGA
Statistics
Matches: 3744, Mismatches: 371, Indels: 105
0.89 0.09 0.02
Matches are distributed among these distances:
888 215 0.06
889 261 0.07
890 70 0.02
891 261 0.07
892 272 0.07
893 454 0.12
894 63 0.02
896 1 0.00
897 4 0.00
898 6 0.00
899 2 0.00
901 337 0.09
902 1028 0.27
903 755 0.20
904 14 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCACC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATC
Found at i:14226107 original size:26 final size:26
Alignment explanation
Indices: 14226078--14226130 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14226068 CCTATCCGAT
14226078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14226104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14226130 C
1 C
14226131 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14227586 original size:26 final size:26
Alignment explanation
Indices: 14227550--14227601 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14227540 CAGTCTGATG
14227550 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14227576 TTAGACTGGGAATGATCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14227602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14229152 original size:26 final size:26
Alignment explanation
Indices: 14229123--14229175 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229113 CCAGTCTGAT
* * *
14229123 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
14229149 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14229175 C
1 C
14229176 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14230054 original size:26 final size:26
Alignment explanation
Indices: 14230025--14230077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14230015 CTGGTCCGAT
14230025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14230051 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14230077 C
1 C
14230078 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14233633 original size:26 final size:26
Alignment explanation
Indices: 14233597--14233649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14233587 CCGGTCGGCT
* *
14233597 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14233623 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14233649 C
1 C
14233650 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:14234550 original size:26 final size:26
Alignment explanation
Indices: 14234500--14234552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234490 CCGGTCTGAT
**
14234500 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14234526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14234552 C
1 C
14234553 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14235433 original size:26 final size:26
Alignment explanation
Indices: 14235404--14235456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14235394 CTGGTCCGAT
*
14235404 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14235430 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14235456 C
1 C
14235457 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14236346 original size:26 final size:26
Alignment explanation
Indices: 14236310--14236362 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14236300 CCGGTCCGAT
14236310 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14236336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14236362 C
1 C
14236363 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14237242 original size:26 final size:26
Alignment explanation
Indices: 14237213--14237262 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14237203 GTCCGATCTG
14237213 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
14237239 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14237263 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:14238142 original size:26 final size:26
Alignment explanation
Indices: 14238106--14238158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14238096 CTAATCCGAT
*
14238106 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14238132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14238158 C
1 C
14238159 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14239050 original size:26 final size:26
Alignment explanation
Indices: 14239014--14239066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239004 CCGATCCGGT
14239014 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14239040 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14239066 C
1 C
14239067 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14239956 original size:26 final size:26
Alignment explanation
Indices: 14239917--14239969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239907 CCGATCCGAT
*
14239917 CTTAGACTATGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14239943 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14239969 C
1 C
14239970 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14240841 original size:26 final size:26
Alignment explanation
Indices: 14240803--14240853 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240793 CCGATCCGAT
*
14240803 CTTAGACGGGGAATGAACACCGTATG
1 CTTAGACGAGGAATGAACACCGTATG
* *
14240829 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACGAGGAATGAACACCGTAT
14240854 ACGGAGTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACACCGTATG
Found at i:14241045 original size:26 final size:26
Alignment explanation
Indices: 14241009--14241061 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240999 GTTGACTTAG
*
14241009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
14241035 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
14241061 G
1 G
14241062 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:14241943 original size:26 final size:26
Alignment explanation
Indices: 14241907--14241957 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14241897 TGACTTAGGT
*
14241907 ATACAGAGTTCACTCCCAGTCTAAGC
1 ATACAGAGTTCACTCCAAGTCTAAGC
* *
14241933 ATACGGAGTTCATTCCAAGTCTAAG
1 ATACAGAGTTCACTCCAAGTCTAAG
14241958 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCACTCCAAGTCTAAGC
Found at i:14243704 original size:26 final size:26
Alignment explanation
Indices: 14243668--14243717 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14243658 GTTGACTTAG
14243668 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
14243694 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14243718 AAGATCGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:14244606 original size:26 final size:26
Alignment explanation
Indices: 14244570--14244622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14244560 GTTGACTTAG
14244570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14244596 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14244622 G
1 G
14244623 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14245319 original size:894 final size:890
Alignment explanation
Indices: 14240852--14245331 Score: 6522
Period size: 879 Copynumber: 5.0 Consensus size: 890
14240842 TGAACTCCGT
* * * *
14240852 ATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACAGAGGGTTGCGGCAGCAGGATCGGCAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * * *
14240917 ATGGAAAGGAGGACCCGACCGATCCTCGGCTAG-GGCATCCCACCCCTCTGGCAGGCTGAGTGCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGG-ATCCCGCCCCTCTGGCCGGCTGAGTGCC
*
14240981 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** * * *
14241046 GCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGAGCATTT
195 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* *
14241111 GCTGGTGCAGCATTTTTCTTCAT-CGGGGCACCATTGCCGGAGCATCGCTGGAGAACCTGACCGG
260 GCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCA-T--C---G--T--CT-GAGAACCTGACCGA
* *
14241175 CGGCATTGGGGTTCTGACGATC-GGGGGCATCGGGGGGGGGTGTGCGCACATGATGTGCGATGGG
313 CGGCATTGGGGTTCCGACGATCGGGGGGC--C-GAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
14241239 TGCTAGTACTTGGCCCTTCTATTGGCCCCCTATACC-TCATCAAACCTCGAGAACTCACACCCCC
375 TGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCGGCATCAAACCTCGAGAACTCACACCCCC
* *
14241303 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAT-GGGAC
439 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAC
* * *
14241367 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
504 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAG
* *
14241432 CCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGCGG-CAAAATTCC-TTCTGAAAAAATTTT
569 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTC-GAAAAAATTTT
* ** *
14241495 AAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
633 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
14241560 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
698 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
14241625 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
763 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
14241690 CGTCTCTCTGGCC--GGT-GTAGTGACCG-CC-CAC-CCGCTCGTTTCGTCGGTTGGCTTAGGC
828 CGTCTCTCTGGCCAACGTAGT-GTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
14241748 ATACGAAGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGCGTTGCGGCAGCAAGATCGGCAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
*
14241813 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGAGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
* * *
14241878 GCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCACTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
14241943 CATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
*** *
14242008 CTGGTGCTATATTTTTCTTCTCCGGGGCACCATCGTCTGAGAACCTGACCGACGGCCTTGGGGTT
261 CTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCTGAGAACCTGACCGACGGCATTGGGGTT
14242073 CCGACGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT-CTGGTACTT-GCC
326 CCGACGATCGG-GGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
14242136 CTTATATTGGCCCCCTATCTGGCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAG
390 CTTATATTGGCCCCCTATCCGGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
14242201 ATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
455 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
14242266 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAACAAAAATACAAG
520 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAG
* * *
14242331 GATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGT
585 GATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
*
14242396 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
650 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
14242461 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATACGAAGA
715 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
* ** * * * *
14242526 TGTGCCTAAACCCACCTACTACCCTATTAATCCACGGCTTCCACATCCCGTCTCTCTAGCCGACG
780 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACG
14242591 TA--GT----GCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGC
845 TAGTGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
14242628 ATACGAAGTTCATTCCCAGCCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCTGCAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * *
14242693 ACCCAGAGGCGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCTTCTGGTCGGCTGAGCGCCT
66 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
* *
14242758 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCCAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
14242823 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * **
14242888 TTGGTACCGCATTTTTCTTCGT-CGGGGCACCA-CGTCGGAGAACCTGACCGATGATATTGGGGT
261 CTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCGTCTGAGAACCTGACCGACGGCATTGGGGT
* *
14242951 TCCGACGATCGGGGGGGCC--GGGGGGTGTCCGCACATGATGTGCGATAGGTGCTGGTACTTGGC
325 TCCGACGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
***
14243014 CCTTATATTGGCCCCCTATCTACCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
389 CCTTATATTGGCCCCCTATCCGGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
14243079 GATTTTACAGGTTTGCTGCCAGTAG-TAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
454 GATTTTACAGGTTTGCTGCCAGTAGCT-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
14243143 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACA
518 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACA
* **
14243208 AGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAACATCCCGAAGT
583 AGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
*
14243273 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAACACGAGTCGTCTTGCCATGAAACTTCACGTG-A
648 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
14243337 GCGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAATGGCACATAGAAATATGA
713 G-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * * *
14243402 AGATGTGCCTAAACCCACCTAACACCCTATCGATCAACGGCTTGCACATCCCGTCTCTCTGGCCG
777 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCA
* *
14243467 ACGTA--GTGCCCGCCCG-TCG--GCTCGTTTTGTCGGTTGGCTTAGGC
842 ACGTAGTGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
14243511 ATAGGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
14243576 ACGTAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCACTGGTCGACTGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
*
14243641 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
14243706 CATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGC-AGCAGCACATGCTGGGCTTGGGCATGT
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGT
* * * * *
14243770 GCTGGTGCCACATTTTACTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATCGTC
260 GCTGGTGCCGCATTTTTCTTCTCCGGGGCACCAT---C---G--TC-T--GAGAACCTGACCGAC
*
14243835 GGCATTGGGGTTCCGACGATCGGGGGGCTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
314 GGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
14243900 GGTACTTGGCCCTTATATTGGCCCGCTATCCCGCATCAAACATCGAGAACTCACA-CACCTTAAA
379 GGTACTTGGCCCTTATATTGGCCCCCTATCCGGCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
14243964 GAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTT
444 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTT
* *
14244029 TTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTATGCATGCCAA
509 TTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
* *** *
14244093 AAAAAATACAAGGATCACGTTTACCAAGTTTTCAG-CAAAATTCC-TTCTGAAAAAATTTTGAAA
573 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTC-GAAAAAATTTTAAAA
* * ** *
14244156 AATCCCTAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
637 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
14244221 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
702 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
14244286 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTGGCGTATCCCGTC
767 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
14244351 TCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGGC
832 TCTCTGGCCAACGTAGTG--TGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
14244413 ATACGAAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGCGTTGTGGCAGTAGGATCGGCAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
14244478 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
*
14244543 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
14244608 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
** * *
14244673 CTGGTGCCGCATTTTTCTTCTCCGGGTTACCATCGTCTAAGAACCTGACCGACGGCATTAGGGTT
261 CTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCTGAGAACCTGACCGACGGCATTGGGGTT
14244738 CCGACGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT-CTGGTACTTGGCC
326 CCGACGATCGG-GGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
14244802 CTTACATTGGCCACCTATCCGGCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTTGAG
390 CTTATATTGGCCCCCTATCCGGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
14244867 ATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
455 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
14244932 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGCATTTTTTTGTGCAAGCCAATAAAAATACAAG
520 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAG
* * * *
14244997 GATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGT
585 GATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
14245062 AAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
650 AAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
14245127 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
714 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
*
14245192 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCAAC
779 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAAC
* *
14245257 ATAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGC
844 GTAGTG--TGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGC
*
14245307 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
14245332 CATACGGAGT
Statistics
Matches: 3234, Mismatches: 289, Indels: 124
0.89 0.08 0.03
Matches are distributed among these distances:
877 29 0.01
878 12 0.00
879 474 0.15
880 291 0.09
881 4 0.00
882 103 0.03
883 396 0.12
884 250 0.08
885 36 0.01
886 5 0.00
887 6 0.00
888 1 0.00
890 2 0.00
891 87 0.03
892 196 0.06
893 41 0.01
894 472 0.15
895 194 0.06
896 336 0.10
897 2 0.00
898 9 0.00
899 3 0.00
902 284 0.09
903 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCTGAGAACCTGACCGACGGCATTGGGGTT
CCGACGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCGGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGT
AGTGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
Found at i:14245335 original size:26 final size:26
Alignment explanation
Indices: 14245305--14245357 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14245295 GTTGGCTTAG
14245305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14245331 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14245357 G
1 G
14245358 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14245968 original size:744 final size:733
Alignment explanation
Indices: 14244539--14246075 Score: 2412
Period size: 744 Copynumber: 2.1 Consensus size: 733
14244529 CCGGCTGAGT
* * *
14244539 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
14244604 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCA
* ** *
14244669 TGTGCTGGTGCCGCATTTTTCTTCTCCGGGTTACCATCGTCTAAGAACCTGACCGACGGCATTAG
130 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCCAAGAACCTGACCGACGGCATTAG
14244734 GGTTCCGACGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTCTGGTACTTG
195 GGTTCCGACGATCGGAGGGGCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTCTGGTACTTG
* * * *
14244799 GCCCTTACATTGGCCACCTATCCGGCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTT
259 ACCCATACATTGGCCACCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTT
* * * *
14244864 GAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
324 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACGTTTTTCAAAT
* * * *
14244929 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGCATTTTTTTGTGCAAGCCAATAAAAATAC
389 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAAAAAAAATAC
**
14244994 AAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAAC
454 AAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAAC
* * * *
14245059 TGTAAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
519 CGTAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTA
**
14245124 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
14245189 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCC
*
14245254 AACATAGTGCCTGCCCGCCC
714 AACATAGTGCCCGCCCGCCC
*
14245274 GCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
1 GCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
14245339 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGCACATGCTGGGCTCAGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCA
14245404 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACC
130 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT---C---G--T--CCA-AGAACCTGACC
* * * * *
14245469 GACGGGATTGGGGTTTCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
184 GACGGCATTAGGGTTCCGACGATCGGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
14245533 GCTGGTACTTGACCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
249 -CTGGTACTTGACCCATACATTGGCCACCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTT
*
14245598 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACA-
313 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACAC
*
14245662 GTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCC
378 GTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCC
* *
14245727 AAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAGCTTCTTTCGAAAAAATTTTAAA
443 AAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
*
14245792 AAATCCCAAACCGTAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCCTGCCATGA
508 AAATCCCAAACCGTAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGA
14245857 AACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
573 AACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
14245922 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCTCG
638 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCC
** * *
14245987 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC
703 TCTCTCTGGCCAACATAGTGCCCGCCCGCCC
* * *
14246018 GCCCGCCCGCTCATTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCTAGTCTAAG
1 GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14246076 ATCAGACCGG
Statistics
Matches: 731, Mismatches: 57, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
734 1 0.00
735 155 0.21
738 1 0.00
741 1 0.00
743 1 0.00
744 413 0.56
745 120 0.16
746 39 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (733 bp):
GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCAT
GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCCAAGAACCTGACCGACGGCATTAGG
GTTCCGACGATCGGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTCTGGTACTTGAC
CCATACATTGGCCACCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACGTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAAAAAAAATACAA
GGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCG
TAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTAAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCAA
CATAGTGCCCGCCCGCCC
Found at i:14247112 original size:26 final size:26
Alignment explanation
Indices: 14247076--14247128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14247066 GTTGACTTAG
14247076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14247102 GCATATGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14247128 G
1 G
14247129 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14248830 original size:26 final size:26
Alignment explanation
Indices: 14248800--14248852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14248790 GTTGACTTAG
14248800 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
* *
14248826 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
14248852 G
1 G
14248853 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:14249736 original size:26 final size:26
Alignment explanation
Indices: 14249700--14249752 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14249690 GTTGACTTAG
14249700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14249726 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14249752 G
1 G
14249753 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14250186 original size:902 final size:902
Alignment explanation
Indices: 14248422--14256885 Score: 4584
Period size: 904 Copynumber: 9.3 Consensus size: 902
14248412 AACTCCTTCC
* * *
14248422 GAAAAATGGAAAACGAGCCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
14248487 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * **
14248552 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGC---GTG-AAGCCCGCCCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
** *
14248613 CGTCCGCTCGTTTCGTCGGTTGGCTTACACATACGGAGTTCATTCCCAGTCTAAGATCGGACC-G
196 CGT-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
14248677 AACCGAGGGTTGCGGTAGCAGGATC-AGCAACACGCAGAGGGGGTCCCGATCGATCCCCGGCTTG
260 -ACCGAGGGTTG-TGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTA
* * * *
14248741 TGCATCCCGCCCTTCTGACGGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAA
322 CGCATCCCGCCCCTCTGCCGG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
14248806 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATC-GAACCAAACCGATG
386 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGG
* * *
14248870 GTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCA
450 GTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * * *
14248935 TCACCGGAGCATCGTCGGGGAACCTGACCGGCGGCATTGGGGTTCCGTCGAT-TGGGGGGCC--G
515 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* * *
14248997 GGGGGTGTGCGCACATGATGTACGATGTGTGCTGGAACTTGGCCCTTATATTCGG-CCCCTATCC
580 GGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCC
* * * *
14249061 CTCATCAAACC-TCAGGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCC
644 CTAATCAAACCTTGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
14249125 AGTGGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
708 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
14249190 TGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
773 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
14249255 GGGGCCAAAACTCCGTCCAAAAAAATTTTAAAAAATCACAAACTGTAAAAAGTTTCAAAAATCTT
838 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
* *
14249320 GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
14249385 AATTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAAATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
14249449 CACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGACATAGTGCCTGCCCGTCCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
* * * *
14249514 CGCTCTCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAG
196 CG-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * ** * *
14249579 ACTGAGGGTTGTGCCAGCAGTATCGACAGCACATAGATGGGGACCCGGTCGAT-CTCGGCTTACG
260 ACCGAGGGTTGTG-TAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACG
* * * *
14249643 CATCCCACCCCTCTAGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
324 CATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
14249708 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
388 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* *
14249773 GCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGCCACCATCG
453 GCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
* * * *
14249838 CCGGAGCATC-ACCGAAAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
518 CCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
* * *
14249902 GGTGTGCGCACATGAGGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAA
583 GGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAA
* *
14249967 TCAAACCTTGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAG
648 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
14250032 CAATTAAAGTGTATGAAATAGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGT
713 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * ***
14250097 TTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTATCGC
778 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
14250162 TAAAACCCCTTCTGAAAGAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCGT
843 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
* *
14250222 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAA-TTCAACGTGAAGGCTTAAGGGACCATTGCAT
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTAT
* * *
14250286 GAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTACCTAAACCCACCTA
65 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
14250351 CCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTTTGGTCGGCAAAGTGCCCACCCGTCCGC
130 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGC
* * *
14250416 CTAC-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCAGACC
195 C--CGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * ** * * *
14250480 AAACCAAGGGTTACTGTAGCAGGATCGGTAGCATGCAGAGGGGGACCTAGCCAATCCCCGACTTA
258 AGACCGAGGGTT-GTGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTA
* * * * *
14250545 CGCATCCTGCCCCTTTGGCTGGCCGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
322 CGCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
14250610 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG
386 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* ** *** *
14250675 TTGCGGCAGCACATGCTAGGCTCAAGCATGCACTGGTGCTGTATTTTTCTTCGCCGGGGCACCAT
451 TTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
14250740 TGCCGGAGCATCGTCGGAGAACCTTACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGTCGGGG
516 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
* *
14250805 GGGGTGTTCGCACATGATGTGCGATGCATGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCT
581 GGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
14250869 AATCAAACCTTGAGAACTCACACCCCCTTAAAAAGGATTTGAGATTTTACAAGTTTCCTGCCAGT
646 AATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
14250934 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
711 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
14250999 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
776 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
14251064 GCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAACGTTTCGAAAATCGT
841 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
* * * *
14251126 GAAAAATAGAAAACGAGTTGTCTTGCCAAGAAACTTAACGTGAAGGCTTAAGGGACCATTTTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
14251191 AATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
14251256 CGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCATAGTGCCCGCCCGCCCG-
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CATAGTGCCCGCCCGCCCGC
* * **
14251319 CC--CGCTTGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
195 CCGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * * * ** * *
14251382 ATTGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGAGGGGGACACGACCAAACCCCGGCTT--G
260 ACCGAGGGTTGTG-TAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACG
* ** * * **
14251445 -----CG-----C--CC-G-T-A-------CAC-TTATTTTTATGGG-TGAAATTAGGCATATAG
324 CATCCCGCCCCTCTGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG-ACTTAGGCATACGG
* * * **
14251486 AGTTCATTCCCAGTCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGTTCAGACCGAGGGTT
388 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
** * * * * * ** * * ** ** * ** *
14251551 AAGGTAG-A-AAGATTGG-T--AGCACGTAGAGGGGGACC-CGACTGATCCCCGGC-TTGC-GCA
453 GCGGCAGCACATGCTAGGCTCGAGCATGT-GCTGGTG-CCAC-ATTTTTCTTCGTCGGGGCACCA
** * * * * * * * * *** * * * **** *
14251608 TC-CC-GTCCCTC-T-GGCCG--GCTGAGCGCCCGAACTCTCGTTTCGTG-GGTTGACTTAGGCA
515 TCGCCGGAGCATCGTCGG-AGAACCTGACCGGCGGCATTGGGGTTCCG-GCGATCG-GGGGGGCC
*** * * * * * * * * ** ** * **
14251666 TACGGAGTTCATTC-C-CA-G-TCTAAGCGGAGTTCATTCCCAGT-CTAAG--C--ATA-CGGAG
577 GGGGGGGGT-GTGCGCACATGATGT--GC-GA-TGC-GTGCTGGTACTTGGCCCTTATATTGGCC
** * * * * *** *** * **
14251721 TTC-ATTCCC-AGTCTAGGATC-GGAGGGAAC-CA-A--GGGTTGTGGTAGCACATGCTG-GGCT
636 CCCTA-TCCCTAATC-A-AACCTTGA--GAACTCACACCCCCTTAAAG-AG--CAT-TTGAGATT
** * * * * ** ** * *
14251778 CGAGCATGTCCTGGTGCC----G-CATT----TTTCT-TCATCGGGG-CAC-CATTGCAGGA-GC
692 TTA-CAGGT-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCA-AATG-
* * ** * * * * * * * **** **** * **
14251830 ATCACCGGAGAACCTGACCGGTGGCA-TTGGGGTTCCGGTGATCGGGGGGTCGGGGGGTGTGCGC
752 GTCA-C--A-AA-AT--CTTGT-ACACTTCGAGTT---TTTAGCTGAATTTTTTTGTGCATGC-C
* ** ** * * * ** * * * *** * **
14251894 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATT-GGCCCCCTA-TCCCT-C-ATCAA
805 AAAAAAAATAC-AAGGAT-CACGT-C-T--ACC-AAGT-TTGGGGCCAAAACTCCTTCCGAAAAA
** ** * * ** * *
14251954 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGT
862 ATTTTAAAAAATCACA-AACCGTAAAAAG--TTTCGA-A----A-A-------T--C-GT
* * * ** * * * * ** *** * * **
14252013 AGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGA
1 -G--A--AAA--AT-AGAAAA--CGAGTCGTCTTGC-CAT-GAAACTTCA-CGTGAAGGCTTA-A
***** * * *** * * * * * * **
14252078 GTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAAT-ACA-AGGATCACG-TG---TACCAAG
52 GGGACCA-TTGTA-TGAATT-TACAAGCC-ATAAAAATGGCATTGG--CACGCAGAAATATGAAG
* * ** * * ** *** *** * * ****
14252137 TTTGGGGCAAAAACTCCTTTCCAAAGAATTTTAAAAAATCC-CGAAC---CACAAAAAGT-T-T-
111 -AT-GTGCCTAAAC-CC--ACC-TACCACCCT-ATCGATCCACG-GCTTGCGCATCCCGTCTCTC
* * * ** ** * ** ** * ** * **
14252195 TGAAAATCATGAAAAATAGAAAACGAGTCATCTTG-CCAT-GAAAC--TTC-ACGTGAAGGCTTA
168 TG----GC-CG--ACATAG--TGCCCGCCCGCCCGCCCGTCG-CTCGTTTCGTCG-GTTGGCTT-
* * * * * * * * ** *** *
14252255 AGGGACCAT-TGTA-TTAATTTACAAGCCATAA-A-AATG-GCATTG-CACG-CAGAAATAT-G-
221 A-GG--CATACGGAGTTCA-TTCCCAGTC-TAAGATCA-GACCA--GAC-CGAGGGTTGTGTAGC
* * * * * ****** ** ** * * * * *
14252311 AAGATGTGCCTA-AACCCA-CCTACCACCCTATCGATCCATGTCTTGA-ACATCTCGTCTCTCTG
277 AGGAT-CGAC-AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT-ACGCATCCCGCCCCTCT-
* * ** * *
14252373 GCTGGCGTAGTACCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
338 GCCGGC-T-G-A---G-C-GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* **** ** * *
14252438 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG-C-AGGATCA-A-CAGCACATAGAGG
395 TCCCAGTCTAAG--CATA-CGGA--G-TTCAT-TCCCAGTCTAAGATCAGACCAG-AC--CGAGG
* * * * ** * * ** * ** * * * *
14252499 G-GGAC-CCGACCA-ATCCCCGGCTTGCGCA--T-C--CCGCCAC-TCTAGC--CGACTGAGCGC
450 GTTG-CGGC-AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
** ** * * * * * * ** *
14252553 C-T-GCACGCTCGTTTCATGGGTTG-A-CTTAGGCGTACGG-AGTT--CATTCCCAGTCTAAGAT
513 CATCGC-CG-GAGCATCGTCGG-AGAACCTGA-CCG-GCGGCA-TTGGGGTT-CC-GGC---GAT
**** * **** * * *
14252611 CAGACCAGACCGAGGATTACG-GT-CGCACATGTTG-GCCTCAGGCATGTGCTGGTGCCACATT-
567 C-GGGGGGGCCG-GG-GGGGGTGTGCGCACATGATGTG-C-GATGC--GTGCTGGT---AC-TTG
*** ** * * * * * * ** ** **
14252672 TTTCTTCAT-CGGGGCACC-ATCGTCGAAGC-ATCGCCGGAGAAC-CTGACCGGC-----G-GCA
621 GCCCTT-ATATTGGCCCCCTATC-CCTAATCAAAC-CTTGAGAACTCACACCCCCTTAAAGAGCA
* * ** *** * ** * * * **
14252727 -TTGGGGTTCCGACGATCGGGGGGCCGGGGGAAGTGCGCACATGATGTACGATGGGTGCTGGTA-
683 TTTGAGATT-TTAC-A--GGTTTG-C--TGCCAGT-AGC-C---AT-TA--AAGTGT-CTGAAAT
* * * ** ** * ** *
14252790 GTTGGA-TCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAG
732 G-GGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA---C-TT--CGAG
** * * * **
14252854 CATTT-G-AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT--GAGGA-CATT
777 TTTTTAGCTGAATTT-T---TTTG-TG-CA-T-GCCA--AAA------AAAATACAAGGATCACG
* ** * * ***
14252914 TTTTTCAA--AT-GGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATG
826 TCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCC-G-----A----AA--AAATT-T---T-
** * *
14252976 CCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
867 ---A-AAAAATCACAA--A-C-CG--TAAAAAGTTT----CGAAAA-T-CGT
* **
14253027 CCGAAAAAATTTTTAAAAAATCCTGAACCG-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
1 --G-AAAAA----TAGAAAA--C-G-A--GTC-----G--TC-----T--TG--CCAT-G--AA-
14253091 GTGTCATCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
33 -----A-CTT--C-----A---C--GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * ** *
14253156 AAAATTGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCT
80 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * * *
14253221 ACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGCGCACGCCTGCACGCCTGCTCATTTT
145 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGTC-GCTCGTTTC
* * ** * *
14253286 GTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGACTAAGATTGGACCAGACTGAGGGTTGCGG
209 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TG
* * * * * * ** * * *
14253351 CAGTAGGATCGGCAGCACGTAGAGGAGGACTCGACCGATCCCTGGCTTGCACATCCCGCCCCTCT
273 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCT
* * * * * * *
14253416 GGCCGGCTCAGCGCTCGGAGGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTTATTCCCAGT
338 -GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* **
14253481 CTAAG-AT-C-G-G---------A--C------C-G----GACTGAGGGTTAAGGCAGCACATGC
402 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGC
* ** *
14253520 TGGGCTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACC-GA--A----C
467 TAGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
* * ** * *
14253577 ----AACCTGACCGGCGGTAATGGCCTTCCGGTGAT---------C--GGGGGGTGTGCGTACAT
531 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACAT
* * ** * *
14253627 GATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAATCTTTAGA
596 GATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGA
* *
14253692 ACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTC
661 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
14253757 TAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAACT
726 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** * *
14253821 TTTTTGTGCATAACAACAAAAATACAAGGATCACATCTACCACCAAGTTTGGGGCCAAAA-TGCC
791 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT---ACCAAGTTTGGGGCCAAAACT-CC
* * *
14253885 TTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCAT
852 TTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
*
14253936 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
14254001 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
14254066 CACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCTGGCGTAGTGCCTGCCCGCACGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
* * * * *
14254131 CGCCTGTTCGTTTAGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCA
196 CGTC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCA
* ** * * *
14254196 -ATCGAGGGTTACGACAGCAGGGTCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTAC
259 GACCGAGGGTTGTG-TAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTAC
* * * * * *
14254260 GCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATATG
323 GCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * *
14254325 GAGTTTATTCCCAGTCTAAACATACGAAGTTCATTCCCATTCTAAGATCAGACCAGACCGAAGGT
387 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * *
14254390 TGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCAT-
452 TGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * ** *
14254454 ---------T-GCCGGAGAACCTGACCGACAGCATTAGGGTTCCAACGATC-AGGGGG-C-GGGG
517 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG
* * * * *
14254506 GGGTGTGCGCACGTGATGTGCGATGGGTGCTAGTACTTGGACCTTATATTGGCCCCCTATCCCTC
582 GGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTA
** *
14254571 ATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTA
647 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
14254635 GCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
712 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
14254700 TTTTTAGCTGAATTTGTTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG
777 TTTTTAGCTGAATTT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
14254764 GCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATGTTTCAAAAATCAT
841 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAA-GTTTCGAAAATCGT
14254827 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
14254892 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
14254957 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG----CCCGCC
* * *
14255022 TGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
192 CGCCCG-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * ** * *
14255087 TCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGTACGCAAAGAAGGACCCGG-CTGTTCCCCGAC
256 CCAGACCGAGGGTTG-TGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGC
** * * ***
14255151 TTGTGCATCTCGCCCCTCAGGCCGGCTGAGCGTTGGCACGCTCGTTTCATGGGTTGACTTAGGCA
319 TTACGCATCCCGCCCCTC-TGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
14255216 TACGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGA
383 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * *
14255281 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGTGGCAC
448 GGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
* ** * * * *
14255346 CATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGCGTTCCGGCGATC-AGGGGGCC-
513 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* * * *
14255409 -AGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGG-CCCCTATC
578 GGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
14255472 CCTCATCAAACCTTCG-GAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGG-TTGCTGC
643 CCTAATCAAACCTT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
14255535 CAGTAGCCATTAAGGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
707 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
14255600 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAGATAAAAGGATCACGACTTCCAAGTT
772 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
14255665 TGGGGCCAAAACACCTTCC-AAAAATATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATC
837 TGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATC
14255729 GT
901 GT
*
14255731 GAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
14255796 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** * * * *
14255861 CATCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGGTGGCGTAGTGCCAGCCCGTCCG-C
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
* * *
14255925 C--CGCTCGTTTCATCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
196 CGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * * ** * * *
14255988 CCGAGGGTTGTAACACCAGGATCTACAGCACGCAGAGGGGGACCCGACCGGTCCCTGGTTTACGC
261 CCGAGGGTTGT-GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGC
* * * * *
14256053 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTCCATGGGTTGACTTAGGCATATGGA
325 ATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * *
14256118 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTG
389 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * *
14256183 CGGTAGCACATGCTAGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGAGCACCATCGT
454 CGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC
* * *
14256248 CGGAGCATTGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCC--GGGGG
519 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
* * * * * *
14256311 GTGTACGTACATGATGTGCGATGGGTGCTGGTACTGGGCCCATATATTGGCCCCCTATCCCTCAT
584 GTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAAT
* * *
14256376 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTGACAGGTTTGCTGCTAGTAGC
649 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* **
14256441 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTAAGTT
714 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
14256506 TTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC
779 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * ** * * *
14256570 GAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAATTTTGAAAATCAT
844 AAAACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
* *
14256629 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGG-CCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
14256693 AATTTACAAGCCGTAGAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
14256758 CACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGGCCGCCCGCT
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
*
14256823 CGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
196 CG-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
14256886 GGATCAAGGG
Statistics
Matches: 5753, Mismatches: 1252, Indels: 1119
0.71 0.15 0.14
Matches are distributed among these distances:
854 5 0.00
855 9 0.00
856 9 0.00
858 2 0.00
859 319 0.06
860 12 0.00
861 9 0.00
862 22 0.00
863 16 0.00
864 31 0.01
865 27 0.00
866 15 0.00
867 13 0.00
868 5 0.00
869 22 0.00
870 13 0.00
871 17 0.00
872 19 0.00
873 6 0.00
874 84 0.01
875 3 0.00
876 1 0.00
877 1 0.00
878 2 0.00
880 2 0.00
881 4 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 90 0.02
886 2 0.00
887 2 0.00
888 1 0.00
890 58 0.01
891 196 0.03
892 28 0.00
893 203 0.04
894 7 0.00
895 280 0.05
896 315 0.05
897 261 0.05
898 298 0.05
899 128 0.02
900 314 0.05
901 179 0.03
902 385 0.07
903 193 0.03
904 835 0.15
905 315 0.05
906 96 0.02
907 6 0.00
908 6 0.00
909 6 0.00
910 4 0.00
911 37 0.01
912 9 0.00
913 7 0.00
914 11 0.00
915 15 0.00
917 2 0.00
918 3 0.00
919 1 0.00
920 6 0.00
921 4 0.00
923 1 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 1 0.00
929 3 0.00
931 2 0.00
932 1 0.00
935 1 0.00
939 5 0.00
940 1 0.00
941 9 0.00
942 6 0.00
944 2 0.00
945 44 0.01
946 6 0.00
947 15 0.00
948 12 0.00
949 8 0.00
950 9 0.00
951 21 0.00
952 13 0.00
953 12 0.00
954 2 0.00
955 10 0.00
956 12 0.00
957 13 0.00
958 8 0.00
959 5 0.00
960 3 0.00
961 1 0.00
962 3 0.00
963 4 0.00
964 9 0.00
965 7 0.00
966 13 0.00
967 5 0.00
969 1 0.00
970 2 0.00
971 4 0.00
972 8 0.00
973 5 0.00
975 2 0.00
976 2 0.00
979 6 0.00
980 26 0.00
981 13 0.00
982 2 0.00
983 10 0.00
984 9 0.00
985 9 0.00
986 13 0.00
987 13 0.00
988 7 0.00
989 1 0.00
990 6 0.00
991 3 0.00
992 4 0.00
993 1 0.00
994 3 0.00
995 3 0.00
996 2 0.00
997 3 0.00
998 5 0.00
999 3 0.00
1001 5 0.00
1002 8 0.00
1003 6 0.00
1004 8 0.00
1005 11 0.00
1006 3 0.00
1007 2 0.00
1008 1 0.00
1010 4 0.00
1011 3 0.00
1012 3 0.00
1013 13 0.00
1014 6 0.00
1015 6 0.00
1016 4 0.00
1020 3 0.00
1021 4 0.00
1022 2 0.00
1023 6 0.00
1024 277 0.05
1025 278 0.05
1026 257 0.04
1027 211 0.04
1028 156 0.03
1029 218 0.04
1030 429 0.07
1031 335 0.06
1032 270 0.05
1033 160 0.03
1034 161 0.03
1035 196 0.03
1036 247 0.04
1037 196 0.03
1038 227 0.04
1039 194 0.03
1040 163 0.03
1041 152 0.03
1042 142 0.02
1043 116 0.02
1044 142 0.02
1045 81 0.01
1046 74 0.01
1047 83 0.01
1048 78 0.01
1049 93 0.02
1050 100 0.02
1051 282 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCC
CGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CCGAGGGTTGTGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCA
TCCCGCCCCTCTGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
GCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGT
GTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCA
AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCACAAACCGTAAAAAGTTTCGAAAATCGT
Found at i:14250634 original size:26 final size:26
Alignment explanation
Indices: 14250604--14250656 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14250594 GTTGACTTAG
14250604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14250630 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14250656 G
1 G
14250657 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14251513 original size:26 final size:26
Alignment explanation
Indices: 14251475--14251528 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14251465 TGGGTGAAAT
*
14251475 TAGGCATATAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
14251501 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
14251527 TA
1 TA
14251529 AGATCGGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:14251696 original size:22 final size:23
Alignment explanation
Indices: 14251667--14251744 Score: 104
Period size: 22 Copynumber: 3.3 Consensus size: 23
14251657 ACTTAGGCAT
14251667 ACGGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATTCCCAGTCTAAG
14251690 -CGGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATTCCCAGTCTAAG
*
14251712 CATACGGAGTTCATTCCCAGTCTAGG
1 ---ACGGAGTTCATTCCCAGTCTAAG
14251738 ATCGGAG
1 A-CGGAG
14251745 GGAACCAAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
22 22 0.45
23 1 0.02
24 5 0.10
26 21 0.43
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (23 bp):
ACGGAGTTCATTCCCAGTCTAAG
Found at i:14251726 original size:26 final size:26
Alignment explanation
Indices: 14251663--14251735 Score: 118
Period size: 22 Copynumber: 3.0 Consensus size: 26
14251653 GTTGACTTAG
14251663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14251689 G----CGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14251711 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
14251736 GGATCGGAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
22 22 0.51
26 21 0.49
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14254103 original size:859 final size:861
Alignment explanation
Indices: 14251752--14256885 Score: 6012
Period size: 859 Copynumber: 5.8 Consensus size: 861
14251742 GAGGGAACCA
* * * *
14251752 AGGGTTGTGGTAGCACATGCTGGGCTC-GAGCATGTCCTGGTGCCGCATTTTTCTTCATCGGGGC
1 AGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG-
* * *
14251816 ACCATTGCAGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGGGTC
64 --CA---C-----CATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATC-----G--
14251881 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
112 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
14251946 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
177 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
14252011 GTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTA
242 GTAGCCATTAAAGTGTCT-AAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
14252076 GAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTG
306 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
* * * **
14252141 GGGCAAAAACTCCTTTCC-AAAGAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCAT
370 GGGCCAAAA-TCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* *
14252205 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATT
433 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
14252270 AATTTACAAGCCATAAAAATGGCATT-GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
498 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** * * *
14252334 CACCCTATCGATCCATGTCTTGAACATCTCGTCTCTCTGGCTGGCGTAGT--AC-CCGCCTGCCC
563 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGCCGCCTGCCC
* * *
14252396 GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
628 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * *
14252461 CCGAGGGTTGTGGCAGCAGGATCAACAGCACATAGAGGGGGACCCGACCAATCCCCGGCTTGCGC
693 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * *
14252526 ATCCCGCCACTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCGTACGGA
758 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
14252591 GTTCATTCCCAGTCTAAGAT-C-AG-A-CC--AGACC-G
823 GTTCATTCCCAGTCTAAGATACGAGTATCCAGAGACCTG
* * * * * *
14252623 AGGATTACGGTC-GCACATGTTGGCCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
1 AGGGTTGCGG-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
14252687 ACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
65 ACCA---T-----CA---CCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATC----GG--
* * * **
14252752 GGGGGAAGTGCGCACATGATGTACGATGGGTGCTGGTAGTTGGATCTTATATTGGCCCCCTATCC
113 GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
14252817 CTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
177 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
14252882 GTAGCCATTAAAGTGTCTAAAATGAGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
242 GTAGCCATTAAAGTGTCTAAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
14252947 CAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
306 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
*
14253012 GGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
370 GGGCCAAAA-TCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
14253077 GAAAAATAGAAAACGTGTCATCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATG
433 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
14253142 AATTTACAAGCCATAAAATTGGTATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCT
498 AATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCT
* * *
14253205 ACCACCCTATCGATCTACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGCGCACGCCTG
561 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGC-CGCCTG
* * * * * * *
14253270 CACGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGACTAAGATTGGACC
625 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
14253335 AGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGAGGACTCGACCGATCCCTGGCTTG
690 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
14253400 CACATCCCGCCCCTCTGGCCGGCTCAGCGCTCGGAGGCTCGTTTCGTGGGTTGACATAGGCATAC
755 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
14253465 GGAGTTTATTCCCAGTCTAAGAT-CG-G-A-CC-G-GA-CTG
820 GGAGTTCATTCCCAGTCTAAGATACGAGTATCCAGAGACCTG
** *
14253500 AGGGTTAAGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * *
14253565 CCATCACCGAACAACCTGACCGGCGGTAATGGCCTTCCGGTGATC-GGGGGGTGTGCGTACATGA
66 CCATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATCGGGGGGGTGTGCGCACATGA
* * * **
14253629 TGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAATCTTTAGAAC
131 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* *
14253694 TCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTA
196 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
* *
14253759 AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAACTTTT
261 AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
**
14253824 TTGTGCATAACAACAAAAATACAAGGATCACATCTACCACCAAGTTTGGGGCCAAAATGCCTTCC
325 TTGTGCATGCCAACAAAAATACAAGGATCACATCT---ACCAAGTTTGGGGCCAAAAT-CCTTCC
* * * *
14253889 GAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
386 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
14253954 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
451 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
14254019 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
516 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
14254084 CTTGCGCATCCCTTCTCTCTGGCTGGCGTAGTGC-CTGCCCGCAC-GCCCGCCTGTTCGTTTAGT
581 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGC-G-CCGC-CTGCCCGCCCGCTCGTTTCGT
* * * *
14254147 CGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCA-ATCGAGGGTTACGAC
643 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGC
* ** * *
14254211 AGCAGGGTCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTG
707 AGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
14254276 GCCGGCTAAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCAGTC
772 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
14254341 TAAACATACGAAGTTCATTCCCATTCTAAGATCAGACCAG
837 T-AAGATACG-AG-T-A-T--C---C--AG---AGACCTG
* *
14254381 ACCGAAGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGTCGG
1 A--G--GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
** * * **
14254446 GGCACCATTGCCGGAGAACCTGACCGACAGCATTAGG-GTTCCAACGATCAGGGGGCGGGGGGGT
62 GGCACCATCACCGGAGAACCTGACCGGCGGCATT-GGCGTTCCGGCGAT-------CGGGGGGGT
* * *
14254510 GTGCGCACGTGATGTGCGATGGGTGCTAGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCA
119 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
14254575 AACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCA
184 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
14254639 TTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
249 TTAAAGTGTCTAAAATGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
14254704 TAGCTGAATTTGTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
313 TAGCTGAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-A
* *
14254769 AAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATGTTTCAAAAATCATGAAAAAT
376 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCATGAAAAAT
14254834 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
440 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
14254899 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
505 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
14254964 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCTGCCCGC
570 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CG--C-GCCGCCTGCCCGC
* * * *
14255029 CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
630 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * ** * * * * *
14255094 GAGGGTTGCGGCAGCAGGATCGGCAGTACGCAAAGAAGGACCCGGCTGTTCCCCGACTTGTGCAT
695 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * ***
14255159 CTCGCCCCTCAGGCCGGCTGAGCGTTGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
760 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
14255224 TCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCG
825 TCATTCCCAGTCTAAG-ATA-CGAG-T-A-T-CCAG----AG-----A-C---CTG
* * *
14255280 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGTGGCA
1 AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GG--
* * *
14255345 CCATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGCGTTCCGGCGATCAGGGGGCCA
63 -----G-C--ACCATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATC----GG---
* *
14255410 GGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGG-CCCCTATCCC
113 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
14255474 TCATCAAACCTTC-GGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGG-TTGCTGCCA
178 TCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
14255537 GTAGCCATTAAGGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
242 GTAGCCATTAAAGTGTCTAAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
14255602 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAGATAAAAGGATCACGA-CTTCCAAGTTT
306 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-ATCTACCAAGTTT
* * *
14255666 GGGGCCAAAACACCTTCC-AAAAATATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCG
369 GGGGCCAAAA-TCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
14255730 TGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
432 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
14255795 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
497 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * ** *
14255860 CCATCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGGTGGCGTAGTGC-CAG-C-CC-GT
562 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGC-GCCGCCTGC
* *
14255921 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCA
626 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
*** * * * * * * *
14255986 GACCGAGGGTTGTAACACCAGGATCTACAGCACGCAGAGGGGGACCCGACCGGTCCCTGGTTTAC
691 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
14256051 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTCCATGGGTTGACTTAGGCATATG
756 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
*
14256116 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAGACCGG
821 GAGTTCATTCCCAGTCTAAG-ATAC-GAG-T-A-TCC-------AG---AGACCTG
* * * *
14256172 ACCAAGGGTTGCGGTAGCACATGCTAGGCT-TGAGCATGTGCTGGTGCCGCATTTTTCTTCATCG
1 ----AGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
14256236 GAGCACCATCGTCGGAGCATTGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGG
61 GGGCACCA---TC--A-C-----CGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATC----
* * * *
14256301 GGGCCGGGGGGTGTACGTACATGATGTGCGATGGGTGCTGGTACTGGGCCCATATATTGGCCCCC
111 --G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
14256366 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTGACAGGTTTGC
172 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
14256431 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAC
237 TGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
14256496 ACTTTAAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATG
301 ACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
** * **
14256561 TTTGGGGCCGAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAATTTTGAAAA
366 TTTGGGGCC-AAA-ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
14256625 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGG-CCATTG
429 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
14256689 TATGAATTTACAAGCCGTAGAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
494 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
* * * *
14256754 CTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGGCCGCC
559 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGC-GCCGCC
* * **
14256819 CGCTCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
623 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
14256884 CC
688 CC
14256886 GGATCAAGGG
Statistics
Matches: 3713, Mismatches: 386, Indels: 298
0.84 0.09 0.07
Matches are distributed among these distances:
857 87 0.02
858 134 0.04
859 392 0.11
860 44 0.01
861 5 0.00
863 2 0.00
865 1 0.00
866 32 0.01
868 5 0.00
869 2 0.00
870 20 0.01
871 341 0.09
872 123 0.03
873 76 0.02
874 1 0.00
875 1 0.00
876 4 0.00
877 260 0.07
880 2 0.00
881 3 0.00
883 1 0.00
885 90 0.02
886 2 0.00
887 1 0.00
888 3 0.00
889 2 0.00
890 55 0.01
891 199 0.05
892 31 0.01
893 203 0.05
894 6 0.00
895 250 0.07
896 287 0.08
897 168 0.05
898 203 0.05
899 95 0.03
900 5 0.00
901 63 0.02
902 3 0.00
903 3 0.00
904 203 0.05
905 214 0.06
906 91 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGGCGATCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
AAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCGCGCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATC
GACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACG
AGTATCCAGAGACCTG
Found at i:14255243 original size:26 final size:26
Alignment explanation
Indices: 14255213--14255265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14255203 GTTGACTTAG
14255213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14255239 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14255265 G
1 G
14255266 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14256138 original size:26 final size:26
Alignment explanation
Indices: 14256109--14256161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14256099 GTTGACTTAG
*
14256109 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14256135 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14256161 G
1 G
14256162 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14256227 original size:896 final size:893
Alignment explanation
Indices: 14253459--14256885 Score: 4607
Period size: 896 Copynumber: 3.8 Consensus size: 893
14253449 GTTGACATAG
* * * ** **
14253459 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTAAGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
14253524 CTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---T-----CA-CCGAACAA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCCGGAGAA
* * * * ** *
14253579 CCTGACCGGCGGTAATGGCCTTCC-G-G-T-----GATCGGGGGGTGTGCGTACATGATGTGCGA
129 CCTGACCGACGGCATTGG-GTTCCAGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * * * *
14253636 TGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAATCTTTAGAACTCACACA
193 TGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAGAACTCACACC
*
14253701 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* * *
14253766 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAACTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** **
14253831 TAACAACAAAAATACAAGGATCACATCTACCACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAA
388 TGCCAACAAAAATACAAGGATCACATCT---ACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
* * *
14253896 TTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
450 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
14253961 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
14254026 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
580 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
14254091 ATCCCTTCTCTCTGGCTGGCGTAGTGCCTGCCCG-CACGCCCGCCTGTTCGTTT-AGTCGGTTGG
645 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTC-CGCCCG-C---TCGTTTCA-TCGGTTGG
* * * *
14254154 CTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCA-ATCGAGGGTTACGACAGCAGGG
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGCAGGA
* * *
14254218 TCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCT
768 TCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * * * *
14254283 AAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * *
14254344 ACATACGAAGTTCATTCCCATTCTAAGATCAGACCAGACCGAA-GGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCGGCAGCACATGCTGG
* *
14254408 GCTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCAT--T----G---CCGGAGAA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGTCGGAGCATCCGGAGAA
* * * *
14254464 CCTGACCGACAGCATTAGGGTTCCAACGATCAGGGGGCGGGGGGGTGTGCGCACGTGATGTGCGA
129 CCTGACCGACGGCATT-GGGTTCCAGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
14254529 TGGGTGCTAGTACTTGGA-CCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCACA
193 TGGGTGCTGGTACTT-GACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTCACA
* *
14254592 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
14254656 GTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTT-
321 G-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTG
*
14254720 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-ATCCTTTCGAAAA
384 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
14254784 AATTTTAAAAAATCCCGAACCGTAAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
448 AATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
14254849 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
14254914 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
14254979 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCTGCCCGCCCGCTCGTTTCGTCG
642 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG--T--CCGCCCGCTCGTTTCATCG
* * * * *
14255044 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGC
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
* * * ** * * * ** * *
14255109 AGGATCGGCAGTACGCAAAGAAGGACCCGGCTGTTCCCCGACTTGTGCATCTCGCCCCTCAGGCC
764 AGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
*** *
14255174 GGCTGAGCGTTGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
829 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * *
14255239 GCATAGGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
14255304 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGTGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGTCGGAGCAT--CCGGAGA
* * * *
14255369 ACCTAACCGACGGCATTGGCGTTCCGGCGATCAGGGGGCCAGGGGGTGTGCGCATATGATGTGCG
128 ACCTGACCGACGGCATTGG-GTTCCAGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
14255434 ATGGGTGCTGGTACTTGACCCTTATATTGG-CCCCTATCCCTCATCAAACCTTCGGAACTCACAC
192 ATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAGAACTCACAC
* *
14255498 CCCCTTAAAGACCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAGGTGTCTAAAATGA
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG-
*
14255562 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
14255627 CATGCCAACAAAGATAAAAGGATCACGA-CTTCCAAGTTTGGGGCCAAAACACCTTCC-AAAAAT
386 CATGCCAACAAAAATACAAGGATCAC-ATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA-
* * * *
14255690 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGATTCGTCTT
449 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
14255755 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14255820 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACAGCTTGCG
579 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
14255885 CATCCCGTCTCTCTGGGTGGCGTAGTGCCAGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAG
644 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* ** * *
14255950 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAACACCAGGATCTACA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
14256015 GCACGCAGAGGGGGACCCGACCGGTCCCTGGTTTACGCATCCCGCCCCTCTGGCCGACTGAGCGC
774 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
14256080 CCGCATGCTCATTCCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * * *
14256135 GCATACGGAGTTCATTCCTAGTGTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
14256200 CTTGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGAGCACCATCGTCGGAGCATTGTCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GCACCATCGTCGGAGCA-T-CCGGAGA
* * * *
14256265 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTACGTACATGATGTGC
128 ACCTGACCGACGGCATT-GGGTTCCAGCGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
14256330 GATGGGTGCTGGTACTGGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
191 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAGAACTCACA
* * * *
14256395 CCCCCTTAAAGAGCATTTGAGGTTTGACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-
* **
14256460 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTAAGTTTTTAGCTGAA-TTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
14256524 GCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCGAAACACCTTCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
** * ** *
14256589 TTTTAAAAAATCCCGAACCAAAAAAAATTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
450 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
14256654 CCATGAAACTTCACGTGAAGGCTTATGGG-CCATTGTATGAATTTACAAGCCGTAGAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
14256718 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGC
580 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
14256783 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGGCCGCCCGCTCGTTCGCTCGTTTCGTCGGTTGGCT
645 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGC-C---CGCTCGTTTCATCGGTTGGCT
14256848 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
14256886 GGATCAAGGG
Statistics
Matches: 2251, Mismatches: 226, Indels: 114
0.87 0.09 0.04
Matches are distributed among these distances:
885 115 0.05
886 5 0.00
887 1 0.00
888 1 0.00
890 55 0.02
891 195 0.09
892 26 0.01
893 199 0.09
894 8 0.00
895 268 0.12
896 315 0.14
897 184 0.08
898 206 0.09
899 92 0.04
900 6 0.00
901 58 0.03
904 205 0.09
905 220 0.10
906 92 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAGCATCCGGAGAACC
TGACCGACGGCATTGGGTTCCAGCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:14260386 original size:902 final size:899
Alignment explanation
Indices: 14257329--14260946 Score: 5023
Period size: 902 Copynumber: 4.0 Consensus size: 899
14257319 GTTGACTTAG
* * *
14257329 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACATGCTGGG
* *
14257394 CTCGGGCATGTGCTGATGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTG-TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * * *
14257459 ACCTGGCTGGCGGCATTGGGGTTCTGATGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
* *
14257524 ATGGGTGCTGGTACTTGGCCCTTATATTGTCCCTCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
14257589 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAGGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
14257654 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG-
* *
14257719 GCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGAGTG--AAAACTCCTTTCGAAAA
389 G-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GAG-GCCAAAACTCCTTCCGAAAA
* *
14257782 AATTTTAAAAAATCCCGAATCATAAAAAGTTTCAAAAATT-GTGAAAAATAGAAAATGAGTCGTC
451 AATTTTAAAAAATCCCGAACCATAAAAAGTTTC-AAAATTCGTGAAAAATAGAAAACGAGTCGTC
*
14257846 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
14257911 CATTGGCACACAGAGATATGAAGATGTGCCTAAACCCACCAACCACCCGATCGATCCACGACTTG
580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
14257976 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGGCCACCAGCCCACCCGCTCATTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCGGTTG
* * **
14258041 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * *
14258106 TCAACAGCACACAGAGGGGGACCCGGTCGATCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCT
775 TCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
* * *
14258171 GAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14258232 GCGTGCGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACATGCTGGG
* * **
14258297 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCT-GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
14258362 ACCTGACC-AGCGGCATTTGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGA-CGGCATTTGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTG
*
14258426 CGATGGGTGGTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCA
* * *
14258489 CACCTCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14258554 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
14258619 TGTATGACAAAAAAAATAAAACGATCACGTCTACCAAGTTTG-GGCCCAAAACTCCTTTCG-AAA
387 TGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGG-CCAAAACTCCTTCCGAAAA
* * * * * *
14258682 AATTTTAAGAAATCCCAAACCATAAAAACTTTCAAAATTTGT-AAAAATAAAAAAGGAGTCGTCT
451 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCT
*
14258746 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
14258811 ATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14258876 ACATCCCGTCTCTCTGGCCGGCGTAATGCCCGTCTGCCCGCCCGCCCACCCGCTCGTTTCATCGG
646 GCATCCCGTCTCTCTGGCCGACGTAGTG-CC--C-GCCCGCCCGCCCACCCGCTCATTTCATCGG
* *
14258941 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * ** *
14259006 GGATCAGCAGCACGTAGAGGGGGGACCTTGTCGATCCCCGGCTTGCACATCCCGCCGTTCTGGTC
772 GGATCAGCAGCACGCAGA-GGGGGACC-CGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
* * * ** *
14259071 GGCTGAGTGCCCGTACTCTTATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCCAA
835 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14259136 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTAC-AGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGA-CAGCACATGCTGG
** * * * * * * *
14259200 GCTCCAGCGTGCGCTTGTGCCGCATTTCTCTTCGCCGGGG-AGCCATTGTCGGATCATCACCAGA
65 GCTCGGGCATGTGC-TGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGCATCACCGGA
* * *
14259264 GAACCTGACCGGCAGCATTTGGGTTCCGACGATCGGGGGGCCCGGGGGGAGTGTGCGCACATGAT
128 GAACCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGG-CC-AGGGG-GTGTGCGCACATGAT
*
14259329 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATGAAC
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAAC
* *
14259393 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTCTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
14259458 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTATAGCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
14259523 TTTATGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCAGGCCAAAACACCTTCCGA
384 TTT-TGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGA
* ** *
14259588 AAAAATTTTAAAAAGTCTTGAACCGA-AAAAAGTTTCAAAATTCGTTAAAAATAGAAAACGAGTC
448 AAAAATTTTAAAAAATCCCGAACC-ATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTC
* *
14259652 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
14259717 TTGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
577 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
14259782 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCTGCTCGTTTCATCGA
642 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCGG
* * *
14259847 TTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCGGTAGTA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * * * * *
14259912 GGATCGGTAGCACGTAGAGGGGGACCCAGCCGATCCTCGGCTTGCGCATCCTGCCCCTTTGGCCG
772 GGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
** * *
14259977 GCTGAGCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * **
14260041 GCATATTGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACATGCTGGG
* * * **
14260106 CTCGGCCATTTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCT-GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
14260171 ACCTGACCGACGGAATTCGGTTTCTGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
* *
14260236 ATGGGCGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
14260301 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
14260366 GGACACTTTTTTCCAATGGTCACAAAATCTTATACACTTCAAATTTTTAGCTAAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TG
* * *
14260431 CATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGAGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
14260495 TTATAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTG
*
14260560 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
14260625 TGGCATGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
14260690 ATCCCGTCTCTCTGGCCGACGCAGTGCCCGCTCGCCCGTCCGCCCGCTCATTTCGTGGGTTGACG
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCT
* * * * ** *
14260755 TAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAACATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCA
* * * * *
14260820 GCAGCAAGCAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCGTCCCTCTGGCCGACTGAG
778 GCAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* **
14260885 CACTGGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
14260943 GCAT
1 GCAT
14260947 GCCGTCTCTC
Statistics
Matches: 2404, Mismatches: 274, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
898 1 0.00
899 174 0.07
900 37 0.02
901 49 0.02
902 654 0.27
903 416 0.17
904 277 0.12
905 233 0.10
906 141 0.06
907 164 0.07
908 49 0.02
909 40 0.02
910 169 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
GCACGCAGAGGGGGACCCGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14261182 original size:251 final size:251
Alignment explanation
Indices: 14260722--14261197 Score: 673
Period size: 251 Copynumber: 1.9 Consensus size: 251
14260712 AGTGCCCGCT
* * *
14260722 CGCCCGTCCGCCCGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTGATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCGCTCATTTCGTCGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
14260787 CGGACCGGATCGAGGGTTGCGGCAGCAACATCGGCAGCAAGCAGAGGGGGACCCGATCGATCCTC
66 CAGACCGGATCGAGGGTTGCAGCAGCAACATCGGCAGCAAGCAGAGGGGGACCCGATCGATCCCC
* * ** *
14260852 GACTTACGCATCCCGTCCCTCTGGCCGACTGAGCACTGGCACGCTCGTTTCGTGGGTTAACTTAG
131 GACTTACGCATCCCGCCCCTCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTAACTTAG
*
14260917 GCATACGGAGTTCATTCCCAGTCTAAGCATGCCGTCTCTCTGGCTGGCGTAATGCC
196 GCATACGAAGTTCATTCCCAGTCTAAGCATGCCGTCTCTCTGGCTGGCGTAATGCC
* * * * *
14260973 CGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCCCGCTCATTTCGTCGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * *
14261038 TAGACCGGATCGAGGGTTGCAGTAGCAGGATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCC
66 CAGACCGGATCGAGGGTTGCAGCAGCAACATCGGCAGCAAGCAGAGGGGGACCCGATCGATCCCC
* * * * * * *
14261103 GATTTATGCATCCTGCCCCTCTGGCCGGCTAAGCACCCGCACTCTCATTTCTTGGGTTGACTTAG
131 GACTTACGCATCCCGCCCCTCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTAACTTAG
*
14261168 GCATATGAAGTTCATTCCCAGTCTAAGCAT
196 GCATACGAAGTTCATTCCCAGTCTAAGCAT
14261198 ACGGAGTTCA
Statistics
Matches: 194, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
251 194 1.00
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.24
Consensus pattern (251 bp):
CGCCCGCCCGCCCGCTCATTTCGTCGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGATCGAGGGTTGCAGCAGCAACATCGGCAGCAAGCAGAGGGGGACCCGATCGATCCCC
GACTTACGCATCCCGCCCCTCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTAACTTAG
GCATACGAAGTTCATTCCCAGTCTAAGCATGCCGTCTCTCTGGCTGGCGTAATGCC
Found at i:14262097 original size:26 final size:26
Alignment explanation
Indices: 14262061--14262113 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14262051 GTTGACTTAG
14262061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14262087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14262113 G
1 G
14262114 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14263786 original size:902 final size:900
Alignment explanation
Indices: 14260943--14264390 Score: 4457
Period size: 902 Copynumber: 3.9 Consensus size: 900
14260933 CCCAGTCTAA
* * * * * *
14260943 GCATGCCGTCTCTCTGGCTGGCGTAATGCCCGCCCG-CC-CTCCCGCTCGTTTCGTCGGTTGGCT
1 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCT
* * * * * * * * *
14261006 TAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTAGCAGGATCG
66 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGAACGAGGGTTGCGGCAGCAGGATCA
** * ** *** * *
14261071 GCAGCATGTAGAGGGGGACCCGATCGATCCCCGATTTATGCATCCTGCCCCTCTGGCCGGCTAAG
131 GCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
14261136 CACCCGCACTCTCATTTCTTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACG
196 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * **
14261201 GAGTTCATTCCCAGTCCAAAATCAGACCA-GACCGAGGGTTACGGTAGCACATGCTGGGCTTAGG
261 AAGTTCATTCCCAGTCTAAGATCAGA--AGGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGG
* * * * *
14261265 CATGTGTTGGTGCCGCATTGTTCTTCACCAGGGCACCATCGCTG-GAA-CATCGTCGGAGAACCT
324 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC-GCAAAGCATCGTCGGAGAACCT
* * *
14261328 GACCGACGGCATT-AGGTTCCGATCGATCGTGGGGGCCGGGGGGTGTGCGCACATGATGTGCAAT
388 GACCGACGGCATTGGGGTTCCGA-CAATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAAT
* *
14261392 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCTATCCCTCATCAAACCTCAACAACTCACACCCC
452 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
14261457 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGA
517 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
14261522 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTAG-GCA
582 CACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAGCTGAATTTTTTT-GTGCA
* * * *
14261586 TGCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCGAAACTCATTCTGAAAAAA-TT
646 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
14261650 TAAAAAATCCCAAACCGCAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
711 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
14261715 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG
776 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ***
14261780 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCAATACTTGC
841 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
14261840 GCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCG--CTCGCTCGTTCCATCGGTTGGCT
1 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCT
* * * *
14261899 TAGGCTTACGGAGTTCATTCCCAGCCTAAGATCGGATC-GAACTGAGGGTTGTGGCAGCAGGACC
66 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGAAC-GAGGGTTGCGGCAGCAGGATC
* ** *
14261963 AGCAGCACATAGAGGGGGGCCCGATTGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGA
130 AGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
* * *
14262028 GCGCCCGCACGTTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
195 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
14262093 GGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCACATGCTGGGCTAGGG
260 GAAGTTCATTCCCAGTCTAAGATCAGA-AGGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGG
* * *
14262158 CATGTGCTGGTGCCACATTTTTCTTTC-CCGGGGCACCATCGTCG--GAGCATCGCCGGAGAACC
324 CATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCG-CGCAAAGCATCGTCGGAGAACC
* * **
14262220 TGACCGACGACATTGGGGTTCCGACAATCGAGCGGGCCCGAGGGGGTGTGCGCACATGATGTGTG
387 TGACCGACGGCATTGGGGTTCCGACAATCGAG-GGGGCCG-GGGGGTGTGCGCACATGATGTGCA
* *
14262285 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCGTCAAACCTCAAGAACTCACTCC
450 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
14262350 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGG
515 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
14262415 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTACAAGTTTTTAGCTGAATTTTTTTGTG
580 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACCT-CAAGTTTTTAGCTGAATTTTTTTGTG
* * * *
14262479 CATGTCAACAAAAATAGATGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
644 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
14262544 TTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTAC
709 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
14262609 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATT
774 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
14262674 GGCATGTGGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
839 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
14262736 ACATCCCGTCTCTCTGGCCAACGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCATCGATTGG
1 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG-CC-CCCGCTCGTTTCATCGGTTGG
* * * *
14262801 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAGCAGATCGAAGGGTTGCGGCAGCAGGA
64 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGAACG-AGGGTTGCGGCAGCAGGA
* * * ** *
14262866 TC-GATAGCACATAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCCGCCCCTCTGACCGGC
128 TCAG-CAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGC
14262930 TGAG-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
192 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
14262994 TATGAAGTACATTCCCAGTCTAAGATCGGAAAGGACCGAGGGTTGTGGCAGCACATGCTGACCTC
257 TACGAAGTTCATTCCCAGTCTAAGATCAG-AAGGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
* * * *
14263059 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGC-CAAAGCACCGTCGAAAAAC
321 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCGCAAAGCATCGTCGGAGAAC
* * *
14263123 CTGACCGACGGCATTGGGGTTCCGGCAATCG-GGGGGTCGGGGGGGTTGTGCGGACATGATGTGC
386 CTGACCGACGGCATTGGGGTTCCGACAATCGAGGGGG-CCGGGGGG-TGTGCGCACATGATGTGC
* *
14263187 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
449 AATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
14263252 TCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAAT-
513 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14263316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAGCTGAAGTTTTTTGT
578 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAGCTGAATTTTTTTGT
* * *
14263381 GTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCAAAAAAA
643 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
14263445 TTTGAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTTGTCTTG
708 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
14263510 CCATCAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGACATAAAAAAGGCAT
773 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
14263575 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
838 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
14263638 GCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTGGTCAGTTGG
1 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCC-CC-GCTCGTTTCATCGGTTGG
* * * *
14263703 CTTAGGCTTACAGAGTTCATTCCCAGCCTAAGATCGGATCAGAACTGAGGGTTGCGGCAGCACGA
64 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGAAC-GAGGGTTGCGGCAGCAGGA
** * *
14263768 TCAGCAGCACGCAGAGGGGGGCCCGACTGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCT
128 TCAGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCT
*
14263833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T
193 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
14263892 ---AAG---A-T--C-G-----GATC----GGACCGAGGGTTGCGGCAGCACATGC-GAGGCTCG
258 ACGAAGTTCATTCCCAGTCTAAGATCAGAAGGACCGAGGGTTGCGGCAGCACATGCTGA-GCTCG
* *
14263937 GGCATGTGCTGGTGCC-CTATTTTTCTTCGCAGGGGCACCATCGTCGGGCATCGTCGGAGCATCG
322 GGCATGTGCTGGTGCCGC-ATTTTTCTTCGCCGGGGCACCATCG-C--GCA------AAGCATCG
* * * * ** * *
14264001 TCGGAGAACCTAACCGGCGGCATTGGAGTTTCGATGATCG-GGGGGCCGGGGGGTGTCCGTACAT
377 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGTGTGCGCACAT
* * *
14264065 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGCGAGA
442 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGA
* *
14264130 ACTCACCCCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
506 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * ** *
14264195 TGAAATGGGGAAACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGA-TTTTTCAGATGAAT
571 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTT-AGCTGAAT
* * *
14264259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT
635 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
** * * *
14264324 CGAAAAAATTTTAAAAAATCTGGAACCGTAAAAAGTTTTGAAAATTATGAAAAACAGAAAACGAG
700 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
14264389 TC
765 TC
14264391 ATCCGGTTGA
Statistics
Matches: 2249, Mismatches: 250, Indels: 114
0.86 0.10 0.04
Matches are distributed among these distances:
876 2 0.00
877 69 0.03
878 1 0.00
881 2 0.00
882 4 0.00
885 141 0.06
886 104 0.05
887 109 0.05
888 1 0.00
890 1 0.00
891 1 0.00
892 4 0.00
893 305 0.14
894 25 0.01
895 261 0.12
896 202 0.09
897 24 0.01
898 1 0.00
900 10 0.00
901 5 0.00
902 360 0.16
903 208 0.09
904 333 0.15
905 76 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGAACGAGGGTTGCGGCAGCAGGATCA
GCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCAGAAGGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCGCAAAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACCTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
Found at i:14264000 original size:11 final size:11
Alignment explanation
Indices: 14263975--14264006 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14263965 GCAGGGGCAC
14263975 CATCGTCGG-G
1 CATCGTCGGAG
14263985 CATCGTCGGAG
1 CATCGTCGGAG
14263996 CATCGTCGGAG
1 CATCGTCGGAG
14264007 AACCTAACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.16, C:0.28, G:0.38, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14264634 original size:26 final size:26
Alignment explanation
Indices: 14264605--14264657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14264595 GTTGAATTAG
14264605 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
14264631 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
14264657 G
1 G
14264658 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:14265550 original size:197 final size:192
Alignment explanation
Indices: 14265178--14265564 Score: 558
Period size: 192 Copynumber: 2.0 Consensus size: 192
14265168 AGGCTTAAGG
* * *
14265178 GACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGAACATAGAAATATGAAGATGTGCCT
1 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGACT
* * ** * *
14265243 AAACCCACTACCACCCAATCTATCCACAGCTTGTGCATCCCTTCTCTCTGGCCGGCGTAGTGCCC
66 AAACCCACTACCACCCAATCGATCCACAGCTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCC
* *
14265308 GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCT
131 GCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCT
* *
14265370 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGACT
1 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGACT
** * * *
14265435 AATGCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCACCTCTCTGGCCGACATAGTGCC
66 AAACCCA-CTACCACCCAATCGATCCACAGCTTGCGCATCCCACCTCTCTGGCCGACATA--G--
*
14265500 TGCCCGCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
126 TGCCCGCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGAT
14265565 AGGACCAGAC
Statistics
Matches: 171, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
192 65 0.38
193 43 0.25
195 1 0.01
197 62 0.36
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (192 bp):
GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAAATATGAAGATGTGACT
AAACCCACTACCACCCAATCGATCCACAGCTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCC
GCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCT
Found at i:14266199 original size:26 final size:26
Alignment explanation
Indices: 14266145--14266201 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
14266135 CTCCTTCCAA
* * ***
14266145 AAAAATTTTAAAAAATCCTGAACCGT
1 AAAAAGTTTAAAAAATCATGAAAAAT
14266171 AAAAAGTTTAAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
14266197 AAAAA
1 AAAAA
14266202 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:14266591 original size:26 final size:26
Alignment explanation
Indices: 14266561--14266613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14266551 GTTGACTTAG
* *
14266561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14266587 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14266613 G
1 G
14266614 ATCAGACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14267304 original size:25 final size:25
Alignment explanation
Indices: 14267275--14267325 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
14267265 TTAGGCATAC
*
14267275 GGAGTTCATTCCCAGTCTAAGATTG
1 GGAGTTCATTCCAAGTCTAAGATTG
14267300 GGAGTTCATTCCAAGTCTAAGATTG
1 GGAGTTCATTCCAAGTCTAAGATTG
14267325 G
1 G
14267326 ACCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (25 bp):
GGAGTTCATTCCAAGTCTAAGATTG
Found at i:14268800 original size:899 final size:891
Alignment explanation
Indices: 14266957--14269485 Score: 3424
Period size: 899 Copynumber: 2.9 Consensus size: 891
14266947 ACTTCGAGTT
** *** *
14266957 TTTACAAGCCATTGTAAATGGCATTGGCACATAGAAATATGAATATGTGCCTAAACCCACCTACC
1 TTTACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
14267022 ACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACCC
65 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * * ** * *
14267087 GCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGGTCAAACAAAATCGA
130 GCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGA
* * *
14267152 GGGTTGCGGCAGCAGGATCGACAGCA-AGCAGAGGGGGACCCAGCTGATCCCCGGCTTGCACATC
195 GGGTTGCGACAGCAGGATCGACAGCACA-CAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATC
* * *
14267216 CCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
259 CCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
14267281 CATTCCCAGTCTAAGATTGGGAGTTCATTCCAAGTCTAAGATTGGACCAGACTGAGGTTTACGGC
324 CATTCCCA-TCTAAGA-T--AAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGC
* * ** *
14267346 AGCACATGCTAGGCTTGGGCATGTCCTGGTGCCACATTTTTCTTCGTCGGGG--CATCATC---G
385 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACATCATCGGAG
* * * * **
14267406 --TCG-GAGAACCTGTCTGACGACATTGGGGTTTCAGCGATCGGTGGGCCCGGGGGGGTGTGCGC
450 CATCGCGAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGCGC
* * * *
14267468 ACATGACGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATTCCTCATCGAACCTC
515 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
14267533 GAGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGCATCCATTAAAG
580 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
14267598 TGTCTTAAATGGGGACGCTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTG
645 TGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
14267662 AATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCC
710 AA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCC
* * *
14267726 TGTCGAAAAAATTTTAAAAAATCCCCAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
774 TGTCGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
14267791 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAATGTATGAA
839 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAA
14267844 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
14267909 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCTGGCGTAGTGCCTGCCCGCCCGTCCG
66 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * *
14267974 CTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGGCCAAG
131 CTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAG
* * * *
14268039 GGTTGCGATAGCAGGATCAACAGCACACAGAGGGGGA-CCGGCCGATCCCCGGCTTGTGCATCCC
196 GGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCC
* * *
14268103 GCCCCTCTGGCCGGCTGAGCACCCGTACACTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCA
261 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
14268168 TTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTA
326 TTCCC-ATCTAAG-AT---AAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCA
* * *
14268233 GCACATACTGGGCTCGAGCATGTGTTGGTGTCAAATTTTTCTTCGTCGGGGCACTATCATCGGAG
386 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCAC-ATCATCGGAG
* * *
14268298 CATCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGGCAATCGGGGGGGTCGGGGGGGTGAGC
450 CATCG-CG-AGAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGC
* *
14268363 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
513 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
14268428 TCGAGAAGTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
578 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
14268493 AGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGC
643 AGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
14268558 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATT
708 TGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATG
*
14268623 CCT-TCCGAAAAAATTTAAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
772 CCTGT-CGAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
14268687 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-TAATTGTATGAA
836 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAA-TGTATGAA
*
14268743 TTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * **
14268808 CCCCATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTTCGCCCG
66 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
** * * * * *
14268873 CTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCAGACTGAG
131 CTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAG
* * * * ** **
14268938 GGTTACGACAGTAGGATCGATAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATTTC
196 GGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCC
* * *
14269003 GCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAG----
261 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
14269064 --------T----TAA-TTC--T--CAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACA
326 TTCCCATCTAAGATAAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCACA
** *
14269112 TGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGACGGGGCACCATCATCGGAGCATCG
391 TGCTGGGCTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCA-CATCATCGGAGCATCG
* * * * * *
14269177 CCGGAGAACTTGACC-AGTGGCATTGAGGTTTCGGCGATCGGGGGGGTCGGGGAGGGTGTGTGGA
455 -C-GAGAACCTGACCGA-CGACATTGGGGTTTCGGCGATCGGGGGGGTCGGGG-GGGTGTGCGCA
* * * *
14269241 CATGATGGGTGAGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTG
516 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
14269306 AGTACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
581 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
14269370 GTCTGAAATGGGGA-CATTTTTTCAAATGGTCAAAAAATCTTGTACACTACGAGTTTTTAGCTGA
646 GTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
14269434 AGTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGG
711 A-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
14269486 CACCCAGAAA
Statistics
Matches: 1456, Mismatches: 160, Indels: 66
0.87 0.10 0.04
Matches are distributed among these distances:
873 95 0.07
874 187 0.13
875 91 0.06
876 1 0.00
878 3 0.00
879 2 0.00
882 1 0.00
885 94 0.06
886 274 0.19
887 13 0.01
888 1 0.00
889 6 0.00
892 1 0.00
894 3 0.00
896 1 0.00
897 208 0.14
898 43 0.03
899 355 0.24
900 77 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (891 bp):
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
CTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAG
GGTTGCGACAGCAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCATCTAAGATAAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGTTGGTGCCAAATTTTTCTTCGTCGGGGCACATCATCGGAGCATCGC
GAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGA
TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCTGTCGAA
AAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAA
Found at i:14269791 original size:26 final size:26
Alignment explanation
Indices: 14269762--14269817 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14269752 TGGGTTGACT
*
14269762 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
14269788 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
14269814 TAAG
1 TAAG
14269818 ATCGGACAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:14270695 original size:26 final size:26
Alignment explanation
Indices: 14270665--14270715 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14270655 TGACTTAGGC
14270665 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
14270691 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
14270716 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:14271581 original size:26 final size:26
Alignment explanation
Indices: 14271551--14271603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14271541 GTTGACTTAG
*
14271551 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14271577 GCATACGGAGTTCTTTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14271603 G
1 G
14271604 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14272032 original size:897 final size:898
Alignment explanation
Indices: 14269493--14272782 Score: 4292
Period size: 889 Copynumber: 3.7 Consensus size: 898
14269483 TGGCACCCAG
* * * *
14269493 AAATATGAAGATGTTCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTG
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * * * * * * **
14269558 TCTAGCCGGCGTGGTGCCTGTCC-GGCCGCCTGTCTGCTCGTTTCGTCAGTTGTTTTAGGCATAC
66 TCTGGCCGACGTAGTGCCCGCCCTGCCCGCC--TC-GCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
14269622 AGAGTTCATTCCCAGTCTAAGATCAGAGTGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGC
128 AGAGTTCATTCCCAGTCTAAGATCAGAATGGAC-AAGGGTTACGGTAGCAGGATCGGCAGCATGC
* * * *
14269687 AGAGGGGGACCCGACCGATCCCTGGCTTGTG-ATCCCG-CCCT-T---C-T-G-GCGCCCGTACG
192 AAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCGAGCGCCCGCACG
* *
14269743 CTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
257 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
** * * ***
14269808 CCAGTCTAAGATCGGACAGGACCGATGGTTACTATAGCACATGCTGGGCTCGGGCATGTGCTGGT
322 CCAGTCTAAGATCAAACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
14269873 GCCGCATTTTTCTT-TGTCGGGGCACCATCGTCGTAGCATCTTCGGAGAACCTGACC-AGCGGCA
387 GCCGCATTTTTCTTCTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCA
* *
14269936 TTGCGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
451 TTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
*
14270000 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
515 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
14270065 ATTTCAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
580 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
14270130 AAATGGTCATAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATCCCAACAAAA
645 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
14270195 ATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCC
710 ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * * *
14270260 GAACCTTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
775 GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTAC
* * * *
14270325 ATGAAGGCATAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCA
840 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGCATGCA
*
14270385 GAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
1 -AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
* * * *
14270450 CTCTGGCCGGCGTAGTGCCCGCCC-ACCCGCC-CACTCGTTTTGTCGGTTGGCTTAGGCATACAG
65 CTCTGGCCGACGTAGTGCCCGCCCTGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* * *
14270513 AGTTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTGCGGTAGCAGGATCGGTAGCATG-A
130 AGTTCATTCCCAGTCTAAGATCAGAAT-GGA-CAAGGGTTACGGTAGCAGGATCGGCAGCATGCA
* * * * * *
14270576 AGAGGGGGACCCGGCCGAT-CCTGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGTGCCTGCAC
193 A-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GTCGAGCGCCCGCAC
* *
14270640 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACAGAGTTCATT
256 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* ** * * *
14270705 CCTAGTCTAAGATCAAATTGGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTCG
321 CCCAGTCTAAGATCAAACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
14270770 TGCCGTATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACCGGCGGCA
386 TGCCGCATTTTTCTTCTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** * *
14270834 TTGGGGTT----CGAT-----GATCGAGGGGGTTTGCGCACATGATGTGTGATGGGTGCTGGTAC
451 TTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
14270890 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
516 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
14270955 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGAAAACTTTTTTCA
581 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
14271020 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGACAA-AAAAT
646 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-
14271084 ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
710 ATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
* * ** *
14271149 GATCCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTTAC
775 GAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTAC
*
14271214 GTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGCTA
840 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGCATGC-A
* * *
14271275 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAT-CACGGCTTGCGCATCCCGTCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* **
14271339 TCTGGCCGACGTAGTG-CCG-CCTGCCCG-CTCGCTCGTTTCATCGGTTGGCTTAGGCATATGGA
66 TCTGGCCGACGTAGTGCCCGCCCTGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
* * * ** *
14271401 GTTTATTCCCAGTCTAAGATCAGAATGGATCAAGGGTTATGGTAGTAGGATCGGCAATAGGCAAA
131 GTTCATTCCCAGTCTAAGATCAGAATGGA-CAAGGGTTACGGTAGCAGGATCGGCAGCATGCAAA
* *
14271466 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGTCGAGCGCCTGCACGCT
195 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GTCGAGCGCCCGCACGCT
* * * *
14271531 CGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCTC
259 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* * *
14271596 AGTCTAAGATCAGACAGGACTGAGGGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGC
324 AGTCTAAGATCAAACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
14271661 TGCATTTTTCTTCACT-GGCGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
389 CGCATTTTTCTTCTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
14271725 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
454 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
* *
14271790 GCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTT
519 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
14271855 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
584 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
** *
14271920 GGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATAC
649 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
14271985 AAGGATCATGTCTACCAAGTTTGGGGCCACAAA-TCCTTTCGAAAAAATTTTAAAAAATCTCGAA
714 AAGGATCACGTCTACAAAGTTTGGGGCCA-AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
*
14272049 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-TTTCACGT
778 CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTT-ACGT
*
14272113 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGCAA
842 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-CATGC-A
* * **
14272172 AAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTTCGCATCCTATCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * * *
14272237 TCTGGCTGACGTAGTGCCCGCCCT-CCCGCCTACCCGTTCATTTCCTCGGTTGGCTTAGGCATAC
66 TCTGGCCGACGTAGTGCCCGCCCTGCCCGCCT---CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * **
14272301 GGAGTTCATT-CTAGTCTAAGATTAGATTGGACAGAAGGTTACGGTAGTAGGATCGGCAGCAAAC
128 AGAGTTCATTCCCAGTCTAAGATCAGAATGGACA-AGGGTTACGGTAGCAGGATCGGCAGCATGC
* * * * * *
14272365 AGAGGGGGACCC-AGCCAATCCCCGGCTTGCGCATCTCGCCCCTTTGGCCGGCTGAGCAACCCGC
192 AAAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTC-GAGC-GCCCGC
* * *
14272429 ACACTCGTTT-AGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATGCAGAGTTC
254 ACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
* * * * * * *
14272493 ATTCCCATTCTAAGATCAAACCA-AACCGAGGGTTGCGCCAGCACATGCTCGGCTTGGGTAGGTG
318 ATTCCCAGTCTAAGATCAAA-CAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * * ** *
14272557 TTGGTGTCGCATTTTTCTTC-GTCAGGGCGCCATCGCCGGAGCATCACCGGAGAACCTGACCGGC
382 CTGGTGCCGCATTTTTCTTCTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
* * * * *
14272621 GGCATTGGGGTTTCGGCAACCGGGAGGGCCGGTGGGGTGTGCGAACATGATGTGTGATGGGTGCT
447 GGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* ** *
14272686 GGTACTT-G----------GGCCCTCTATCCAACATCAAACCTCGAGAACTCACACCCCGTTAAA
511 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
14272740 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
576 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
14272783 ATTTTTACGG
Statistics
Matches: 2112, Mismatches: 233, Indels: 104
0.86 0.10 0.04
Matches are distributed among these distances:
886 3 0.00
887 99 0.05
888 275 0.13
889 527 0.25
890 7 0.00
891 1 0.00
892 4 0.00
893 167 0.08
894 5 0.00
896 7 0.00
897 423 0.20
898 222 0.11
899 7 0.00
900 5 0.00
901 5 0.00
902 90 0.04
903 218 0.10
904 47 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCTGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATCAGAATGGACAAGGGTTACGGTAGCAGGATCGGCAGCATGCAAAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGTCGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAAACAGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCTCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
GTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCA
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCATGCA
Found at i:14273272 original size:26 final size:26
Alignment explanation
Indices: 14273236--14273288 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14273226 CCAGTCTGAT
*
14273236 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14273262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14273288 C
1 C
14273289 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14273992 original size:26 final size:26
Alignment explanation
Indices: 14273956--14274008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14273946 CCAGTTCGAT
14273956 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
14273982 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
14274008 C
1 C
14274009 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:14274459 original size:730 final size:722
Alignment explanation
Indices: 14273626--14275087 Score: 2067
Period size: 729 Copynumber: 2.0 Consensus size: 722
14273616 TAAAAACTCA
*
14273626 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
*
14273691 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTT-TTCAAGGTTTGATGAG
66 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-AAGGTTTGATGAG
14273755 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
130 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
14273819 -CGGCCTCCCC-GATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGACGA
195 TCGGCC-CCCCTGATCACCAGAACCCCAATGCCACCGGTCAGG-T-T-C-----T-C--CGACGA
* * * * *
14273882 TGGTGCCTCGATGAAGAAAAATGCGACACCAACACAT-A-CAGCATGTGCTGCCGCAACCCTCAA
248 TGGTGCCCCGATGAAAAAAAATACGACACCAACACATCACCAGCATGTGCTACCGCAACCATCAA
* * ***
14273945 TCCAGTTCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTTTGTATGCC
313 TCCAGTCCAATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCC
* * * * **
14274010 TAAGTTAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATACGCAAGCCG
378 TAAGTCAACCCACGAAACGAACGTACGGGTGCTCAACCGGCCAGAGGGCCGGGATACGCAAGCCG
* * * * **
14274075 GGGATCGATCGGATCCCCCTCTGCGTACTGTTGATCCTGCTGCTGCAACCCTCGGTCCGGTCCT-
443 GGGATCGATCGGATCCCCCTCTGCATACTGTCGATCCTACTGCCGCAACCCTCAATCCGGT-CTG
* ** * ** *
14274139 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACG-AGTGGGCGGGCGGAC
507 ATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACGTA-CGAACGGGCAGAC
* * *
14274203 GGGCAGGCACTACGTCGGCCAGAGAGACGGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGT
571 GGACAGGCACTACGCCGGCCAGAGAGAC-GGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGT
14274268 GGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
635 GGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
14274333 ATGGTCCCTTAAGCCTTCACGTC
700 ATGGTCCCTTAAGCCTTCACGTC
*
14274356 AAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
* * * *
14274421 GGCCGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
66 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGG
*
14274486 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCT
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT
* * *
14274551 CGGCCCCCCTGATCATCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGGTGCCCCGATG
196 CGGCCCCCCTGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGATG
* * * **
14274616 AAAAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCATCGGTCCAGTC
261 AAAAAAAATACGACACCAACACAT---C-A--CCAGCATGTGCTACCGCAACCATCAATCCAGTC
* *
14274681 CAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCA
320 CAATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* ** ** *
14274746 ACCCACGAAATGAACGTACGGGTGCTCAGTCGGCCAGAGGGCCGGGATGTGTAAGCCGGGGATCG
385 ACCCACGAAACGAACGTACGGGTGCTCAACCGGCCAGAGGGCCGGGATACGCAAGCCGGGGATCG
* * * *
14274811 GTCGGGTCCCTCTCTGCATGCTGTCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGA
450 ATCGGATCCCCCTCTGCATACTGTCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGA
* * *
14274876 CTGGGAATGAACTCCGTACACCTAAGCCAAGCGACGAAATGTACGAACGGGCAGACGGACGGGCA
515 CTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAACGTACGAACGGGCAGACGGACAGGCA
* *
14274941 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGC
580 CTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGC
14275006 ACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
645 ACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
14275071 AAGCCTTCACGTC
710 AAGCCTTCACGTC
14275084 AAGT
1 AAGT
14275088 TTCATGGCAA
Statistics
Matches: 651, Mismatches: 67, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
721 38 0.06
723 1 0.00
724 1 0.00
726 1 0.00
728 128 0.20
729 260 0.40
730 179 0.27
731 12 0.02
732 31 0.05
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (722 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT
CGGCCCCCCTGATCACCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGGTGCCCCGATG
AAAAAAAATACGACACCAACACATCACCAGCATGTGCTACCGCAACCATCAATCCAGTCCAATCT
TAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
GAAACGAACGTACGGGTGCTCAACCGGCCAGAGGGCCGGGATACGCAAGCCGGGGATCGATCGGA
TCCCCCTCTGCATACTGTCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTACACCTAAGCCAACCGACGAAACGTACGAACGGGCAGACGGACAGGCACTACGC
CGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTC
Found at i:14274736 original size:26 final size:26
Alignment explanation
Indices: 14274685--14274737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14274675 CCAGTCCAAT
**
14274685 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14274711 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14274737 C
1 C
14274738 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14275620 original size:26 final size:26
Alignment explanation
Indices: 14275580--14275632 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14275570 TCGGTCTGAT
14275580 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14275606 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
14275632 C
1 C
14275633 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14276199 original size:895 final size:892
Alignment explanation
Indices: 14274356--14277850 Score: 4712
Period size: 895 Copynumber: 3.9 Consensus size: 892
14274346 CCTTCACGTC
* *
14274356 AAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
14274421 GGCCGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
*
14274486 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCT
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C-
* *
14274551 CGGCCCCCCTGATCATCGGAACCCCAATGCCATCGGTCAGGTTCT-C--CGA------CGATGGT
190 C-GCCCCCC-GATCATCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGCCCGCGATGGT
* * * * *
14274607 GCCCCGATGAAAAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCATC
253 GCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* ** * * * *
14274672 GG-TCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCATAT
318 GGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTAT
* * * * * *
14274736 GCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTCAGTCGGCCAGAGGGCCGGGATGTGTAAG
382 GCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
* * * * ** *
14274801 CCGGGGATCGGTCGGGTCCCTCTCTGCATGCTGTCGATCCTACTGCCGCAACCCTCAATCCGGTC
447 CCGGGGATCGGTCGGCTCAC-CTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTC
** * * ***
14274866 TGATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAAGCGACGAAATGTA-CGAACGGGCAG
511 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGCGGGTGGG-AG
* * * * *
14274930 ACGGACGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGG
574 GCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGG
*
14274995 TGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
639 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
14275060 AATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGAT
704 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
*
14275125 TTTTGAAACTTTTTACC-GTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAG
769 TTTTGAAACTTTTT-CCGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAAC
* * * * *
14275189 TTGGTAGACGTGATCCTTGTATTATTTTTGGCATCCATAAAATAATTCAGCTAAAAAGTCA
832 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCA
* *
14275250 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTGATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
14275315 GGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* *
14275380 GATAGGGGGCTAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCC
* * *
14275443 CCGATCATCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGCTCCTGCGATGGTGCCCC-
196 CCGATCATCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGC-CC-GCGATGGTGCCCCG
* *
14275507 AGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGATC
259 A-CGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGATC
*
14275572 GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAA
323 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAA
* * * * * *
14275637 GTTAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAAAGGGGCGGGATGCACAAGCCGGAG
388 GTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * * *
14275702 ATCGATCGGCTCGACCTCTGTGTGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGAACT
453 ATCGGTCGGCTC-ACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCT
* *
14275767 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGAGTGCGGGCA
517 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGAG-GCGGGCA
* *
14275832 GGCACTATGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTT
581 GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTT
*
14275897 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
646 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14275962 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTTTATTTTTCATGATTTTTGAA
711 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
14276027 ACTTTTTCCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTTAGCCCCAAATTTGGTAG
776 ACTTTTTCCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGGAG-TTTTGGCCCCAAACTTGGTAG
14276092 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCA
839 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCA
** *
14276146 AAGTGTACAAGATTTCATGACCATTTGAAAAAAGTGTCCACA-TTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
14276210 GGCAGTAAACCTGTAAAATCTCAAATACGCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* *
14276275 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAGACCCCCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A---CACC
* * * * *
14276340 GGCCCCTCCGATCATCGGAACCCTAATTCCCCCAGTCAGATTCTCCGACGATGCCCCGACAATGG
191 -GCCCC-CCGATCATCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATG-CCCG-CGATGG
* * *
14276405 TGCCCCGATGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCT
252 TGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCT
* *
14276470 CGGCTTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGG-AATGAACTCCGT
317 CGGATCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGCAATGAACTCCGT
* * *
14276533 ATGCCTAAGTCAACCCACGAAAAGAGCGTACGAGTGCTCAG-CTGGCCAGAGGGGCAGGATGCGT
380 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTC-GGCCAGAGGGGCAGGATGCGC
* * * * * * *
14276597 AAGTCAGGGATCGGTCGGGC-CCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTTTG
444 AAGCCGGGGATCGGTC-GGCTCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTG
* * *
14276661 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGC-------A
508 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGA
* * * * * * * *
14276719 GGCGGGCGGGTACTACGTCGGCCAAAGAGACGGGATGCGTAAGCCGTGGATCGACAGGGTGGTAG
573 GGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAG
* *
14276784 GTGGCTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
638 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14276849 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTGCACGA
703 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
14276914 TTTTTAAAACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
768 TTTTTGAAACTTTTTCCGGTTCGAGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAAC
* *
14276979 TTGGTAGACGCGATGCC-TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
832 TTGGTAGACGTGAT-CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCA
* * *
14277040 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCTATTTCAGACACTTTAATGGTTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
14277105 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
* * *
14277170 GATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCACCGCAAATCATGTGCGCACACCCCCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CC
* *
14277235 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGG
191 -G-CCCCCCGATCATCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGC-CC-GCGATGG
* *
14277300 TGTCCC-AGCGAAGAAAAATGTGGCA-CAACACATGCCCGAGACCAGCATGTGCTACCGCAACCC
252 TGCCCCGA-CGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
*
14277363 TCGGACCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTA
316 TCGGATCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTA
* * *
14277428 TGCCTAAGTTAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCTA
381 TGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAA
* * * * * * *
14277493 GCCGGGGATCGGTTGGCTTGACCTCTGCGTGCTGCC-AGTCCTGCTGCTGTAATCCTTGGTCTGG
446 GCCGGGGATCGGTCGGC-TCACCTCTGCGTGCTGCCGA-TCCTACTGCCGCAACCCTCGGTCTGG
* * *
14277557 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGGCG
509 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGG-A
* * * * *
14277622 GGCGAGCAGGCACTATACCGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAG
573 GGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAG
*** **
14277687 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTTATCTCTTGTAAATTCAT
638 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCAT
* *
14277752 ACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACG
702 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
14277817 ATTTTTGAAACTTTTTGCGGTTCCAGATTTTTTA
767 ATTTTTGAAACTTTTTCCGGTTCGAGATTTTTTA
14277851 TTGGCATGCA
Statistics
Matches: 2295, Mismatches: 244, Indels: 114
0.87 0.09 0.04
Matches are distributed among these distances:
884 33 0.01
885 7 0.00
887 3 0.00
890 1 0.00
893 7 0.00
894 448 0.20
895 1141 0.50
896 123 0.05
897 1 0.00
900 1 0.00
901 1 0.00
903 185 0.08
904 336 0.15
905 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCC
CCGATCATCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGCCCGCGATGGTGCCCCGAC
GAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGATCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
GGTCGGCTCACCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGAGGCGGGCAGGCAC
TATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTCCGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCA
Found at i:14276522 original size:26 final size:26
Alignment explanation
Indices: 14276484--14276536 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14276474 TTGGTTCGAT
14276484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14276510 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14276536 C
1 C
14276537 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14277418 original size:26 final size:26
Alignment explanation
Indices: 14277378--14277430 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14277368 CCGGTCTGAT
*
14277378 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14277404 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14277430 C
1 C
14277431 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14278997 original size:735 final size:738
Alignment explanation
Indices: 14277308--14279310 Score: 3171
Period size: 736 Copynumber: 2.7 Consensus size: 738
14277298 GGTGTCCCAG
* * ** * * ** * *
14277308 CGAAGAAAAATGTGGCA-CAACACATGCCCGAGACCAGCATGTGCTACCGCAACCCTCGGACCGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
** * *
14277372 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGT
66 TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * **
14277437 TAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCT-AGCCGGGGA
131 CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCG-TAAG-CGGGGA
*** * * *
14277501 TCGGTTGGCTTGACCTCTGCGTGCTGCCAGTCCTGCTGCTGTAATCCT-TGGTCTGGTCTGATCT
194 TCGACCGGGTT--CC-CT-C-TGCTGCCA---CTGCTG--G-AACCCTCT-GTCTGGTCCGATCT
14277565 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGGCGGGCGAGCA
247 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGT-GGC-GGCGAGCA
14277630 GGCACTATACCGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTT
310 GGCACTATACCGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTT
*
14277695 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTTATCTCTTGTAAATTCATACAACGGT
375 AGGCACATCTTCATATTTCTATGTGCCAATGCCA-TTTTTATCGCTTGTAAATTCATACAACGGT
14277760 CCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
439 CCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
14277825 AACTTTTTGCGGTTCCAGATTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
504 AACTTTTTGCGGTTCCAGATTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
14277890 TACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGC
569 TACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGC
14277955 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGG
634 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGG
14278020 GGGCCAATATAAGGGCCTAGTACCAACACCCATCGCACGA
699 GGGCCAATATAAGGGCCTAGTACCAACACCCATCGCACGA
*
14278060 CGAAAAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
14278125 TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
14278190 CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCGGGGATC
131 CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCGGGGATC
14278255 GACCGGGTTCCC-CT-CTG-CA-TGCTGGAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGA
196 GACCGGGTTCCCTCTGCTGCCACTGCTGGAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGA
14278316 ACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGACAGGCGAGCAGGCACTATACCGGC
261 ACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGG-C-GGCGAGCAGGCACTATACCGGC
14278381 CAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACATCTTCAT
324 CAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
14278446 ATTTCTATGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAACGGTCACTTAAGCCTTCAC
389 ATTTCTATGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAC
14278511 GTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
454 GTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
14278576 CAGATTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTGTGAC
519 CAGATTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTGTGAC
14278641 CATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
584 CATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
14278706 CAAATGCTCTTTAAGGGGGTGTGAG-TTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
649 CAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
14278770 CCTAGTACCAACACCCATCGCACGA
714 CCTAGTACCAACACCCATCGCACGA
14278795 CGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
1 CGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
14278860 TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
14278925 CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCGGGGATC
131 CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCGGGGATC
14278990 GACCGGGTTCCCTCTGCATGCTACTGATCCTGCTGTGGAACCCTCTGTCTGGTCCGATCTTAGAC
196 GACCGGGTTCCCTCTGC-TGC--C--A--CTGC--TGGAACCCTCTGTCTGGTCCGATCTTAGAC
* *
14279055 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GGC-G-G-GCA--CTAC-
252 TGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGCGGCGAGCAGGC-ACT
* ** * ** * *
14279111 GT--CGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGACAC
316 ATACCGGCCAGAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTTAGGCAC
*** * * * *
14279174 ATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAA
381 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAACGGTCCCTTAA
* * *
14279239 GGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
446 GCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
*
14279304 TACGGTT
511 TGCGGTT
14279311 TGGGATTTTT
Statistics
Matches: 1181, Mismatches: 52, Indels: 52
0.92 0.04 0.04
Matches are distributed among these distances:
735 270 0.23
736 446 0.38
737 179 0.15
738 6 0.01
739 2 0.00
740 8 0.01
741 2 0.00
742 1 0.00
743 1 0.00
744 3 0.00
745 5 0.00
746 5 0.00
747 1 0.00
748 71 0.06
749 1 0.00
750 2 0.00
752 29 0.02
753 149 0.13
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (738 bp):
CGAAGAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCATAACCCTCGGTCTGG
TCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGGAACGAGCGTACGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCGGGGATC
GACCGGGTTCCCTCTGCTGCCACTGCTGGAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGTGGCGGCGAGCAGGCACTATACCGGCCA
GAGGGATGGGATGCGCAAGCCGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTATGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCCA
GATTTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
TAGTACCAACACCCATCGCACGA
Found at i:14279770 original size:26 final size:26
Alignment explanation
Indices: 14279741--14279793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14279731 CTGATCCGAT
*
14279741 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
14279767 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
14279793 C
1 C
14279794 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14280655 original size:26 final size:26
Alignment explanation
Indices: 14280616--14280665 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14280606 CAGTCTGATC
*
14280616 TTAGACTGGGAATGAACTTCGTATAG
1 TTAGACTGGGAATGAACTCCGTATAG
* *
14280642 TTAGATTGGTAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
14280666 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAG
Found at i:14281557 original size:26 final size:26
Alignment explanation
Indices: 14281518--14281570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14281508 CCGGTCTGAT
14281518 CTTAGACTGAGAATGAACTTC-GTATG
1 CTTAGACTGAGAATGAAC-TCAGTATG
*
14281544 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
14281570 C
1 C
14281571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCAGTATG
Found at i:14282448 original size:26 final size:26
Alignment explanation
Indices: 14282410--14282462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14282400 TCTGTCTGAT
*
14282410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14282436 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14282462 C
1 C
14282463 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14283009 original size:903 final size:900
Alignment explanation
Indices: 14280577--14285319 Score: 6078
Period size: 903 Copynumber: 5.3 Consensus size: 900
14280567 CCGATGATGC
* * * * * *
14280577 CCCAGTATGTGCTGCCGCAACTCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATAG
1 CCCAGCATGTGCTGTCGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTAT-G
* * * * * *
14280642 -TTAGATTGGTAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACAAGCGTGCGAGCACTCAGC
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14280706 CGGCCAGAGGGACGGGATACGCAAGCTGGGGATCGACTGGGTCCCCCTTTGCATGCTGCTGATCC
129 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCC
* * * * * * *
14280771 TGTTGCCACAACCCTT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTA
194 TGCTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14280835 ACCGATGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
259 ACCGACGAAACGA---GGCGGGCGGGC-AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14280900 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCC
320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
14280965 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14281030 CGACCCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGA-GGTTCGAGATTTTTTAATATTTT
450 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTT
* *
14281094 TTCGGAAGGAGTTTT-GCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
514 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14281158 AAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATT
579 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14281223 TCAGAAACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
644 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14281288 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACAC
709 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * **
14281353 ATCATGTGCGCACACCCCCCCGGCCTCCTCGATCGTCAGAACCCCAATGCCATCGGTCAGGTTCT
774 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
14281418 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
839 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
14281480 CCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTTCGTATGC
1 CCCAGCATGTGCTGTCGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14281545 TTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAGCA
65 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * ** * *
14281610 GGCCAGAGGGGCGGGATGTGCAAG-CGGGGATCGACCTGGTCCCCTTCTGCATGCTATCGATCCT
130 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCCT
* * * *
14281674 ACTGCTGCAACCC-TCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTAAAGCCA
195 GCTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCA
* * * * *
14281737 ACCGACGAAATGA-GCGAGC--G--G-GGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGCC
259 ACCGACGAAACGAGGCGGGCGGGCAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
14281796 GTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTT
324 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
14281861 TTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTCCACCTGAAGTTTCATGGCAAGAAGAC
389 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14281926 TCGTTTTCTATTTTTCAC-ACATTTTGAAACTTTTTACGGTACGGGATTTTTTAAAATTTTTTCG
454 TCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
** ** * *
14281990 GAAGGAGTTTTCACCCCAAACTTTTTAGACATGATCCTTGTATTTTTGTTGGGATGCACAAAAAA
518 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14282055 ATTCAGCTAAAACCTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
583 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
14282120 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTT
648 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14282185 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
713 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
14282250 TTTGTGCACACCCCCCCGGCCCCCCCGATCG-CTGGTACCCCAATGCCGCCGGTCAGGTTCTCTG
778 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
14282314 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCGAG
842 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
14282373 CCTAGCATGTTCTGTCGCAACCCTCAGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
1 CCCAGCATGTGCTGTCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
14282438 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCG
66 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * *
14282503 GCCAGAAGGGTGGGATGCACAAGCCAAGAATCGGCAGGGTCCCCCTCTGCGTGCTGCCGATCCTG
131 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCCTG
* * *
14282568 CTACCGTAACCCTTGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
196 CTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
14282632 CGACGAAACGAGCACACGGGCGGGCAAGCGGGCACCATGCCGACTAGAGAGACGGGATGCGCAAG
261 CGACGAAACGAG---GCGGGCGGGC-AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
14282697 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCAT
322 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
14282762 TTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
387 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** ** *
14282827 ACTCGTTTTCTATTTTTCTTGATTTTCCAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
452 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
14282892 GGAAGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
517 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14282957 AATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
582 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
14283022 GGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAAGCTGAAATGCTCTTTAAGGGGGTGTGTGT
647 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
14283087 TCTCGAGGTTTGATG-GGTGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACAT
712 TCTCAAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * *
14283151 CATGTGCGCACACCCGCCCGGCCCCACCGATAATCGAAACCCCAATGTCGCCGGTCAGGTTCTCC
776 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
14283216 GGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
841 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * ** * * * *
14283276 CCCAGCATTTGCT-ACTGCAACCCTCAATCCGGTCCGATCTTGGACTGGGAATGAACTCTGTATG
1 CCCAGCATGTGCTGTC-GCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14283340 CTTAGACTAGGAATGAACTCCGTATGCCTTAGTCAACCCACGGAACAAGCATGCGGGCGCTCAGC
64 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14283405 CGGCCAGAGGGGTGGGATGCGCAAG-CGGGGATCGACCGGTTTCCCCTCTGCGTGCTGCTGATCC
129 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCC
* * * * *
14283469 TACTGCTGCAACCC-TCAGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
194 TGCTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14283533 ACCGACGAAACAAGCGGGCGGGCTGGCGGGCGGGCACTACGTCGGCTAGATAGATGGGATGCGCA
259 ACCGACGAAAC--G-AGGCGGGCGGGC-AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14283598 AGCCGTGGATCGATAGCGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
14283663 ATTTTTATGGCTTGTACATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14283728 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
450 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
14283793 TTGGAAAGTGTATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
515 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14283858 AAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
580 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
14283923 TAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATACTTTTTAAGGGGGTGTGA
645 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14283988 GTTCTCAAGGTTTGATGAGGGATAAGGGGGCCAATATAAGGGCCTAGTAACAGCACCCATCGCAC
710 GTTCTCAAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
14284053 ATCATGTGCGCACA-CCCGCTGGCCCCCCCGATCGTCGGAGCCCTAATGTCGCCTGTCAGG---T
774 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
14284114 -------T-CTCCGGCGATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCCGAG
839 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
14284168 CCCAGCATGTGCTGTCACAA--C-C---CT-T-TG---TT---C---G---G---TCC-AAT-CT
1 CCCAGCATGTGCTGTCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
14284208 TGGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCAACGAAACGAGTGTACGGGCGCTCAGTCG
66 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
14284273 GCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC-GGGTCCCCCTCTACATGCTGCCGATCCT
131 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCAGGGTCCCCCTCTGCATGCTACCGATCCT
* * * *
14284337 ACTGCCGCAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCAA
195 GCTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14284401 TCGACGAAACGA-GCGGG-TGGCTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
260 CCGACGAAACGAGGCGGGCGGGC--AGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
14284464 CGTGGATCGATAGGG-GGTAGGTGGCTTTAGGCACATCTTCATATTTTTGCATGCCGATGCCATT
323 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
14284528 TTTATGGCCTT-TAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCTTGGCAAGATG
388 TTTATGG-CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** ** *
14284592 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
452 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
14284657 GGATGGATTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
517 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14284722 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCTTTTCA
582 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
14284787 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
647 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
**
14284852 TCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATATAAGGGCCAAGTACCAGCAC
712 TCTCAAGGTTTGATGAGGGATA---GG---------GGGCCAATATAAGGGCCAAGTACCAGCAC
* *
14284917 CCATCACACATCATGTGCGCACACCCCCCGTCGGCCCCCCTGATCGTCGGAACCCC-ATGCCGCC
765 CCATCGCACATCATGTGCGCACACCCCCC--CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * *
14284981 -GTCAGGTTCTCCGG-TATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACA
828 GGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
*
14285044 TGCCTGA-
893 TGCCCGAG
* * * *
14285051 ACCAGCATGTGCTGCCGCAACCCTCGGTCTGAGCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CCCAGCATGTGCTGTCGCAACCCTCGGTCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** *
14285116 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCCAGCGCTCAGTC
65 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** ** * * *
14285181 GACCAGAGCGACGGGATGCGTAAGTTGGGGATCGGTTGGGTCCCCCTCTACGTGCTACCGATCCA
130 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCCT
* * * * * *
14285246 GCTGCCGCAACCC-TC-GATCCGGTCCGATCTTACACTTGGAATGAACTTCGTAAGCCTAAGCCA
195 GCTGCCGCAACCCTTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
14285309 ATCGACGAAAC
259 ACCGACGAAAC
14285320 AAGCGTGCGG
Statistics
Matches: 3362, Mismatches: 389, Indels: 172
0.86 0.10 0.04
Matches are distributed among these distances:
861 1 0.00
862 362 0.11
863 59 0.02
864 2 0.00
865 1 0.00
866 78 0.02
867 99 0.03
868 3 0.00
871 1 0.00
873 49 0.01
874 11 0.00
875 7 0.00
876 21 0.01
877 2 0.00
880 2 0.00
883 19 0.01
884 50 0.01
885 2 0.00
886 1 0.00
889 3 0.00
890 1 0.00
891 2 0.00
892 399 0.12
893 454 0.14
894 4 0.00
895 2 0.00
896 1 0.00
897 4 0.00
898 5 0.00
899 1 0.00
900 1 0.00
901 4 0.00
902 99 0.03
903 1257 0.37
904 172 0.05
905 1 0.00
906 1 0.00
907 3 0.00
908 3 0.00
909 175 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCAGCATGTGCTGTCGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCATGCTACCGATCCTG
CTGCCGCAACCCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGGCGGGCGGGCAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
Found at i:14283354 original size:26 final size:27
Alignment explanation
Indices: 14283318--14283371 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
14283308 TCCGATCTTG
* *
14283318 GACTGGGAATGAACTCTGTATG-CTTA
1 GACTAGGAATGAACTCCGTATGCCTTA
14283344 GACTAGGAATGAACTCCGTATGCCTTA
1 GACTAGGAATGAACTCCGTATGCCTTA
14283371 G
1 G
14283372 TCAACCCACG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
GACTAGGAATGAACTCCGTATGCCTTA
Found at i:14284893 original size:12 final size:12
Alignment explanation
Indices: 14284876--14284906 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
14284866 GAGGGATAGG
14284876 GGGCCAATATAA
1 GGGCCAATATAA
14284888 GGGCCAATATAA
1 GGGCCAATATAA
14284900 GGGCCAA
1 GGGCCAA
14284907 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:14285125 original size:26 final size:26
Alignment explanation
Indices: 14285089--14285141 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14285079 CTGAGCCGAT
14285089 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14285115 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14285141 C
1 C
14285142 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14285417 original size:160 final size:159
Alignment explanation
Indices: 14285115--14285492 Score: 458
Period size: 160 Copynumber: 2.4 Consensus size: 159
14285105 ACTCCGTATG
* * * **
14285115 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCCAGCGCTCAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
14285179 TCGACCAGAGCGACGGGATGCGTAAGTTGGGGATCGGTTGGGTCCCCCTCTACGTGCTACCGATC
65 CCGACCAGAGCGACGGGATGCGCAAGCTAGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATC
*
14285244 CAGCTGCCGCAACCCTCGA-TCCGGTCCGAT
130 CAGCTGCCGCAACCCTC-ACTCCAGTCCGAT
* * * * *
14285274 CTTACACTTGGAATGAACTTCGTAAGCCTAAGCCAATCGACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14285339 CGGCCAGA-CGGGCGGGATGCGCAAGCCTAGGGATCGGCCGGGTCCCCCTCTACGTGGTACCGAT
66 CGACCAGAGC-GACGGGATGCGCAAG-CTAGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGAT
* *
14285403 CCTGCTGCCGCAACCCTCACTCCAGTCTGAT
129 CCAGCTGCCGCAACCCTCACTCCAGTCCGAT
* * *
14285434 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCG-GACGGGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGTG-CGGGCG
14285493 GGCGGGCACT
Statistics
Matches: 184, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 73 0.40
160 110 0.60
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGCGACGGGATGCGCAAGCTAGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCC
AGCTGCCGCAACCCTCACTCCAGTCCGAT
Found at i:14286188 original size:26 final size:26
Alignment explanation
Indices: 14286152--14286204 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14286142 CTAGTCTGAT
14286152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14286178 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14286204 C
1 C
14286205 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14287280 original size:902 final size:901
Alignment explanation
Indices: 14285274--14306156 Score: 13571
Period size: 902 Copynumber: 23.3 Consensus size: 901
14285264 CCGGTCCGAT
* * * * * * *
14285274 CTTACACTTGGAATGAACTTCGTAAGCCTAAGCCAATCGACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14285339 CGGCCAGACGGGCGGGATGCGCAAGCCTAGGGATCGGCCGGGTCCCCCTCTACGTGGTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
*
14285404 CTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14285469 ACCGACAAAACGAGC-GGA-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14285532 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAA
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* **
14285597 TTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-AAAAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* *
14285661 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
14285726 GGAAAGATTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATCCACAAAAA
455 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
14285791 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
14285856 AACACATTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGT
585 AACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14285921 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * **
14285986 GTGTGCGTACAACCCCCGCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
715 ATGTGCG--C-A-CACC-CCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
** * *
14286051 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAAATGCCCGAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * **
14286116 CAGCATATGCTGCCACAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
*
14286178 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
14286242 CCGGCCAGAGGGGCGGGATGTGCAAGCCTAGGATCGGTCAGGTCCCCCTCTACGTGCTACCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
* * ** * ** *
14286307 TTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTGGACTCTGAATGAACTCCGTTTGCCTAAGCCA
130 CTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
14286372 ACCGACGAAACGAGCGTGCGAGCGGGCG-GACGGGCACTACGCCAGG-CAGAGAGACGGGATGCG
195 ACCGACGAAACGAGCG-G-GAGCGGGCGAG-CGGGCACTACGCC-GGCCAGAGAGACGGGATGCG
**
14286435 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
14286500 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGA-ATGAAGTTTCCTGGCA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACATGAAGTTTCATGGCA
* * * * *
14286564 AGATGACTCATTTTCTGTTTTTCACGATTTTGGAAACTTTTTGCGGTT-TAGGATTTTTTAAAAT
385 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAAT
* ** * *
14286628 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGTGTGATACTTGTATTTTTGTTGGCTTGCA
449 TTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
14286693 TAAAAAAATTCAGCTAAAAACTCTG-AGGGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCTC
514 CAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
14286757 CATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
578 CATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14286822 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATC
643 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
14286887 ACACATCATGTGCGCACACCCCCTAG-CCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGT
708 ACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
*
14286951 TCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
773 TCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
14287016 CCTAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
838 CCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
14287080 CTTGGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14287145 AGGCCAAAGGGGAGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCTC-AGCGTGCTATCGATT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA-CGTGCTACCGATC
* * **
14287209 CTACTGTCGCAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTTAGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTC-ACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14287273 AACCGACGAAATGAGCGGGTGGGCGGGCGAGCGGGCACTACACCGACCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGC-GG-GAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
14287338 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAGTAC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
14287403 CATTTTTATGGGTCGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* * *
14287468 ACGACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
** * * *
14287533 TTCAAAAGGAATTTCAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
14287598 AACAATTCAGCTGAAAACTTGAAGTGTATAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14287663 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTG
582 TCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14287728 AGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * ** * *
14287793 ATCAAGTGTGCACAGCCCCCTCAGCCCCATCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTC
712 ATCATGTGCGCACA-CCCCCT-AGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
14287858 TCTGGCGATGCTCCGACGATGGTACCCC---G--G-----T---G----AGCACATGCCCGAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
14287906 CAGCATGTGCTGTCGAAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCTTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14287968 CTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
14288033 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCAGTTCCCCCTCTACATGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * ** * * *
14288098 TGCTACCGTAACCCTCATTCTGGTC-CATTCTTAGACT-GGAATGAACACCGTATGCCTAAGCCG
131 TGCTGCCGCAACCCTCACTCCAGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14288161 ACTGACGAAACGAGC-AG-GTGGGCTAGCGGGCACGACGCCGGCCAGAGAGACGGGATGTGCAAG
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
14288224 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATCTTTCTACATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * ** * * * *
14288289 TTTTGTGGCTTGTAAAATCATACAATGGTGCCTTATCCCTTCACGTGATGTTTCATGGGAAGATG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* * *
14288354 ACTCGTTTTCTGTTTTTCACGATTTTTCAAACTTTTTGTGGTTCCG-GATTTTTTAAAATTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTTT
* *
14288418 CGGAAGGAGTTTTCA-CCCCAAACTTTGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
454 CGGAAGGAGTTTT-AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14288482 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14288547 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGA
583 CAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14288612 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-------CAC-C-
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * ** *
14288668 -CA--T-CGCAC-CCCCC-GGCCCCCCCAATCATCGAAACCATAATGTCGTCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** *
14288727 GGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
778 GACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
14288792 TATGTACTGCCGCAACACTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATG
843 CATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
14288851 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14288916 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGT-CCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * * *
14288980 TGCTACCACAACCCTCAAT-CTGATTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAA
131 TGCTGCCGCAACCCTCACTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14289044 ACCGACAAAACGAGCGGGCAG-GTG-G-GCGAGCACTACGCAGGCCAGAG-GGCAGGATGTGCAA
195 ACCGACGAAACGAGCGGG-AGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ***** * * ** *
14289105 GCC-TGG---GAT-CGGTCG--GGTCCCCCTATGCATA-CTCTCGATCCTGCTGC-TG-CAA--C
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT-TC-ATATTTCTGCATGCCAATGC
* * ** * * ** * * * * *
14289158 CCTTGGTT-TGG--T-CCAATCTTAGACTGGGAATGAACTCCGTATGCC-TAAGCCAACCGACAA
322 CATT-TTTATGGCTTGTAAAT-TCATAC----AATGGTC-CCTTAAGCCTTCA--C-A-TGA-AG
** * * ** **** ***** * ****** * **** *
14289218 AAT-A-AGC-AGACGGGCAGGCGGGCGGGCACTACATCGGCCAAAGAGACGGGATGC-G--CAAG
375 TTTCATGGCAAGAC-GACTCGTTTTC-TATTTTTCA-CGATTTTTGAAACTTTTTGCGGTTCGAG
*** ** ** **** * * * * * * * * *
14289277 -CCGTGGATCGATAGGGT-GGTAGGTGGGTTTAGGCACATCATCATAT-TTCAG-CATG--CCAA
437 ATTTTTTA-AAATTTTTTCGGAAGG-AGTTTTAGCCCCA--AAC-T-TGGT-AGACGTGATCC-T
* * * * * * * * ** *
14289336 TGCCATTTTT-ATCGCTTGTA-AATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCAT
494 TG-TATTTTTGTTGGCATGCACAA---A-AAAAT--TCAGCTAAAAAC-T--C--GAAGTGT-A-
* * * *** *
14289398 GGCAAGACATGTTT-TCTATTTTTCATGATTTTTAAAACTTTTTACAGT-TCGGGATTTTTTAAA
545 --CAAG--AT-TTTGT-GA-----C--CA-TTTGAAAA------A-AGTGTCCCCA--TTTCAAA
* * ** * ** * ** * ** * ** **
14289461 -ATTTTTTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTG-TATTTTTGTTGG
587 CA---CTTT--AATGG-CTACTAGCAGCAAACCT-GTA-AAAT-CTCAAATGCTCTTTAAGGGGG
** *** *** * *** * * *** * ** * * * *
14289522 CATGCA---CAAAAAAATT-AAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAAAA
643 TGTG-AGTTCTCGAGGTTTGATG--AGGGA-T--AGGGGGCCAATA-TAAG-GGCCA--AG-TAC
* * * * *** *** **
14289583 AAGTGTC-CCCATTTCAGACACTTTAAT-T--GC-TACTGGC-AG-CAAACC--T-GT-AAAATC
697 CA--G-CACCCA--TC--ACAC-ATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAA-C
* * * ** * * * * * **
14289637 TCAAATGCTCTTTAACGAGGTGTGAGTTCT-TGAGGTTTGAT--GAGGGATAGG-G----GGCCA
753 CCCAATGC-C-GT--C--GGTCAG-GTTCTCCGACG-ATGCTCCGA-CGAT-GGTGCCCCGGTGA
* * ** * * ** * * * * *
14289694 ATATAAGGGCCAAGTACCAGCACA-GATCGTA---CATCATGAGC-G-CACACCCCCTCGG-C-C
808 AGAAAAATG-C-GGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCA-ACCCTCGGTCTA
** * * * *** * *
14289751 CCCCGATCGCTGAAAC-CCTAATG-CCGTCGGTCA-G
869 GTCCAAT--CTTAGACTGGGAATGAAC-TCCGT-ATG
* ** ** * * ** * * * * * * *
14289785 GTT-CTCCAGGCATGCACCGACGATGGTGCCT-TGGCGA---A-GAAA--A--ATGC-AGCACT-
1 CTTAGACTGGGAATG-AACTTCG-T-ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * * ** * * * ***** **
14289838 AGCACATGCCCGAGGCCACCATGTGCTGCCGCAACCCTCGG-TCGATCCGATCTTAGACTGGGAA
63 AGC-C-GGCCAGAGG--GGC--GGGATG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG--
* * * * * * * * * **** *
14289902 TGAACT-CCG-TACGCTTAGATTG--GGAA---TGAATTTC-GTATG-CCTAAGTCAACCAACGA
119 TG--CTACCGAT-C-C-T-G-CTGCCGCAACCCT-CACTCCAGTCTGATCTTAGACTGGGAATGA
* * * * * * * * *
14289958 A--ACG-AAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGTGTAAGCTGGG-GATCGGTC
176 ACTCCGTATGCCTA----AGC-CAACCGACGAAACGAGC--G--G-G--AGC-GGGCGA---G-C
* ** * ** * ** * * * * * ** * **
14290019 GGGTCCACCACTGCATGCTATTGA-TCCTGCTGCTCGC-ATCCCTCGGTTCGGTCTGATCTTAGA
224 GGG--CACTAC-GCCGGCCAGAGAGACGGGATG--CGCAAGCCGT-GGATCGATAGGGTGGTAG-
* * * * * ** * * *** *** ** *
14290082 CTGGG--AATG-A-A-CTCCGTATGCCT--AAGCCAA--CCAATGAAATGAG--TGGGCAGGCGT
282 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG-GCTTGTAAATTCAT
* *** * * * **** * *
14290136 GCGGGCGGGCGGGCAC-TACG-CTGGC-CA-GAGAGACGGGATGTGCAAGCCGTGGA-TCGGTAA
346 AC-AATGGTC---C-CTTAAGCCT-TCACATGA-AG-TTTCATG-GCAAGAC---GACTC-GT-T
** * * * * * ** * * **
14290196 GGCGGTAGGTGAGTTTAGGCAC-A-TCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTG
397 TTC--TA--T---TTT--TCACGATTTTTGAAACTT-TT--TG-CGGTTCGAGATTT-T---TT-
* ** * * * * * ** * * * *
14290259 CAAATTCATAC--AACG-GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
444 AAAATTTTTTCGGAAGGAGT---TTTAGCC-CCA----AA-CTTGGTAG-ACG-TGA-TCCTTGT
* * ** ** * **** * * **** * * * * *
14290321 CTATTT-TTCACGATTTTAGAAACTTTTTACGGTTCGAGATTTTTTTTGAATTTTTTGAGAGGAT
497 ATTTTTGTTGGC-A-TGCACAAAAAAATT-CAG--CTA-A--AAACTCGAA--GTGT-ACAAGAT
* * **** * * * ** * ** * * *
14290385 TTT-TGGCCCCAAACTTGGTGGACGTGAT---CATGTACAAAAAAATTCA--GCTAAAAAC-TCG
551 TTTGT-G-ACC--ATTTGAAAAAAGTG-TCCCCAT-TTCAAACACTTTAATGGCTACTAGCAGCA
* *** **** * **
14290443 AA-GTGTACAAGAT-T-TTGTGAC-CATTTGAAAAAAGTGTCCCCA-TT-TCAGACACTTT-A-G
610 AACCTGTA-AA-ATCTCAAATG-CTC-TTT-AAGGGGGTGT---GAGTTCTC-GA-GGTTTGATG
* * * ** *** * * ***** * *
14290500 -TGGCTAGTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGT
665 AGGGATAG-GG-GGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCATCA---CAC-A--T
* * * * * ** ****** * * * *
14290564 -TTGATGAGGGATAGGGGGCCAATATAAGGGCC-A-AGTAC-GAGCACCC-ATCGCACATCATGT
714 CATG-TG-CGCACA----CCCCCTAGCCCCCCCGATCGT-CGGAAC-CCCAAT-GC-CGTC-GGT
* ** * ** * ** * * **** *
14290624 GA-GCACACCCCCCACCCCCCGATCG-TCGGAAGCCCAATGCCACCGGT-TAG-GTTCTCCGGCG
768 CAGGTTCTCCGACGATGCTCCGA-CGAT--G--G-----TGCC-CCGGTGAAGAAAAATGCGGC-
* ** * ** * * * *
14290685 ATGCTCCG-ACGATGGTGCCCG-GCGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAG--
821 A--C-CAGCAC-A---TGCCCGAGCCCAG-CATGTGCTG--CC-GCA-A-CCCTCG-GTCTAGTC
* ** *
14290745 CATATGCTGCT-GCAACCCTTGGTCTG--GTCCG-AT-
872 CA-AT-CT--TAG--A--CTGGGAATGAACTCCGTATG
* *
14290778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * ***
14290843 TGGCTAGAGGGGCAGGATGTGCAAGCCGGGGATCGGTAGGATCCCCTTTTGCGTGCGGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* *** * * *
14290908 TGCTGCCTGCAACCCT-AGGTTTGGGTC-GATCTTAGACTGGGAATGAACTACGTAAGCCTAATC
131 TGCTGCC-GCAACCCTCA--CTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * *
14290971 CAATCGGTGAAATGAGC---AG-GCG-GA-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
193 CAACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
14291030 AACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
14291095 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * ** * *
14291160 TGACTCCTTTTCTATTTTTCACGATTTTTGAAAGTTTTTATGGTTTGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * * ** * *
14291225 TTGGAAGTAGTTTTGGCCCCAAACATATTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * **
14291290 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAACCTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14291355 CAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGA
583 CAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14291420 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCACACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* ** *
14291485 TCATGTGCACACACCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCG-CTGGTCAGGTTCTC
713 TCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * * * *
14291549 CGACGATGCTCCGACGAGGGTGCCCCGATGAAGAAAAATACGGCACTAACACATGCCGGAGCCTA
777 CGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** * *
14291614 GCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATCAACTCCGTATG
842 GCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14291674 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14291739 CGGCCAGA-GGGCGAGATGCGCAAGCCAGGGATTGGTCAGGTCCCCCTCTGCGTGCCACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* ** * * ** *
14291803 TACTGTTGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
14291868 TCGATGAAATGAGC-GG-GCGGGCGAACGGGCGATCACTACGCCGGCCAGATAAACGGGAAGCAC
196 CCGACGAAACGAGCGGGAGCGGGCGAGC-GG-G--CACTACGCCGGCCAGAGAGACGGGATGCGC
* ** *
14291931 AAGCCTTTAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14291996 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* * * ** *
14292061 ATGACTCATTTTCTATTTTTCACGATTTTTGAAAGTTTTTATGGTTTCG-GATTTTTTAAAAATT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTT
* * * * *
14292125 TTT-GGAAGTA-TTTTAGGCTCCAAACTTGGTGGATGTGATCCTTGTATTTTTTTTGGCATGCAC
451 TTTCGGAAGGAGTTTTA-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14292188 -AAAAAA-T----T------TC--AGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
14292239 TTTCAGACACTTTAATGGCTAATGGCAGCAAATCTGTAAAATCTCTAATGCTCTTTAAGGGGGTG
580 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** *
14292304 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACTGGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * * ** *
14292369 ACATCATGCGCGCACA-CCCCTCGACCCCCCAATCACCGGAACCCCAATGTCGTCGGTCAGGTTC
710 ACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** * * * ** *
14292433 TGCGGTGATGCTCGGGCGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * * *
14292498 TAGTGTGTGCTGCCGTAACCCTCGGTC-CGATCCGATCTTAGACTGGGAATGAACTCCGTAAG
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14292560 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACAAGCGTGGGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14292625 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTCAGGT-CCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * * *
14292689 TACTACCACAACCCTCAGTCC-GATATGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAA
131 TGCTGCCGCAACCCTCACTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14292753 ACCGACAAAACGAGCGGGCAG-GTG-G-GCGAGCACTACGCCGGCCAGAGAGGCAGGATGCGCAA
195 ACCGACGAAACGAGCGGG-AGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
14292815 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCCATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
14292880 TTTTTATGGCTTGCAAATTCATACAGTGGTCCCTTAGGCCTTCACGTGAAGTTTAATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* ** * * * **
14292945 GACTCGTTTTCTAATTTTCACGATTTTCAAAACTTTTTACGATTCGGGATTTTTTTTGAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTT
* * *
14293010 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-AAA
453 TCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14293074 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
518 AAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14293139 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
582 TCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * **
14293204 AGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGTAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * *
14293269 ATCATGCGCGCACACCCCC-A--CCCCCCGATCATCGGAAGCCCAATGCCGTCGGTCAGGTTCTC
712 ATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
14293331 CGGCGATGCTCTGACGATGGTGCCCTGGTGAAGAAAAATGCGGCACAAGCACATGCCCGAGCCCA
777 CGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14293396 GCATGTGCTGCGGCAA-CC-C--T-T-G----------GTCT--G---G-ACT--G-AT-
842 GCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14293430 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCGCAAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * **
14293495 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCTTTTTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * *** * * *
14293560 TGCTACCGCAACCTTCGA-TTTGGTTTGATCTTAGATTGGGAATGAACTCCGTAAGCCTAAGCCA
131 TGCTGCCGCAACCCTC-ACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
14293624 ATCGATGAAACGA---GTA---GGCG-GGGGGCACTACGTCGGCCAAAGAGATGGGATGCGCAAA
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14293682 CCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
14293747 TTTTATGACTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAACATG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* * * * * *
14293812 ACTCATTTTTTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCGGGATCTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * *
14293877 GGAAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
455 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* **
14293942 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAACCTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * * *
14294007 GACACTTTAATGGCTATTGGGAGCAAACCTGTAAAATCTCAAATGCTTTTTCAGGGGGTGTGAGT
585 AACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14294072 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCACACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* ** * *
14294137 ATGTGCACACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCG
715 ATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * * * * * * * *
14294201 ACGATGCTCTGACGA-GGTACCCTGATGAAGAAAAATACGGCACCAACACATACCGGAGCGCAGC
779 ACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** * *
14294265 ATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGAGAATCAACTCCGTATG
844 ATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14294323 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGATCGTGCGGGCAG-TTAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
* * * * * * * **
14294387 CCGGCCAGAAGGGCGGGATGTGCAAGCCAGGGATTGGTCAGGTCCCCCTCTGCATGCTGTCGA-C
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
* * * ** * * * *
14294451 CTACTGCTGTAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14294516 ACCGATGAAACGAGC-GG-GCGGGCGGACAGACGGTCACTACACCGGCCAGATAGACAGGAAGCG
195 ACCGACGAAACGAGCGGGAGCGGGC-G--AG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * **
14294579 TAAGCCTTTAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
14294644 CCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
* * * * * *
14294709 GATGACTCCTTTTATATTTTTCATGATTTTTGAAAGTTTTTACGGTTTC-AGATTTTTTAAAATT
386 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATT
* * * * *
14294773 TTTTTGGAAGTAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCAC
450 TTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14294838 AAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
14294903 TTTCAGACACTTTAATGGCTAATGGCAGCAAACCTATAAAATCTCTAATGCTCTTTAAGGGGGTG
580 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
14294968 TGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* ** * ** ** *
14295033 ACATCATGCGCGCACACCCCCCCGGCCCCCCCAATCACCGGAACCCCAATGTTGTCGGTTAGGTT
710 ACATCATGTGCGCACA-CCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
** * * ** * ** * *
14295098 CTCCGGTGATGCTCTGGCGACAGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGTCCGAGC
774 CTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * *
14295163 CCAGTGTGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14295226 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTCACC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** *
14295291 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * ** * *
14295356 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * * *
14295421 CCGACAAAACGAGC-GG-GCAGGCGGGCAAGCACTACGTCGGCCAAAGAGGCGGGATGCACAAGC
196 CCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
14295484 TGTGGATCGATAGAGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
14295549 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGATGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
* ** * **
14295614 CTCGTTTTCTAATTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTTGAATTTTTTC
391 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTC
* * *
14295679 GGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
14295744 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
14295809 GACACTTTAATGGCTACTGGGTAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AACACTTTAATGGCTACT-AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14295874 TTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* ** * *
14295939 CATGTGCGCACACCCCCTGGCCCCCCCGATCGTTAGAACCCTAATGCTG-CTGGTCAGGTTCTCC
714 CATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* * * * *
14296003 GCTCGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCA
778 G-ACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * ** * *
14296068 GCATGTGCTGTCGCAACCCTCGATC-CGATCTGATCTTATACTAGGAATGAACTCCGTATG
842 GCATGTGCTGCCGCAACCCTCGGTCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATG
*
14296128 CTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ***
14296193 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCCGTCAGGTCTCCCTCTACGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * ** * * * *
14296258 TACTACTGCAACCCTCGA-TTCGGTCCAATCTTAGATTGGGAATAAACTCTGTATGCGTAAGCCA
131 TGCTGCCGCAACCCTC-ACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14296322 ACCGATGAAACGAGC-GG-GCTGGC-A---AGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14296381 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCCTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
14296446 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* *
14296511 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* ** * * * *
14296576 GAAAGGAGTTTTTTCCTCAAACTTGGTAGATGTGATCCTTGTA-GTTTGTTGACATGCACAAAAA
455 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
14296640 TATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
14296705 GACAATTTAATGGCTACTGGCCGCAAACCTGTAAAATCTTAAATGCTCTTTAA-GGGGTGTGAGT
585 AACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14296769 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
** * ** * * * * *
14296834 ATGTGCGCACACCCCCCGGTCCCCCCGATCACCGAAACCCTAATGCCGCCGGTTAGGTTCTCCGG
715 ATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * ** * *
14296899 CGATGC-CCTGGCGATGATGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGC
780 CGATGCTCC-GACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * **
14296963 ATGTGCTACCGCAACCCTC-GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 ATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
14297020 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14297085 CGGCTAGAGGGGCGGGATGCTCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
** * * ** ** *
14297150 TGCTGCCATAACCCTTAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14297215 CCGAAGAAACAAGCGGGCGGCGGGCCG-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGG-AGCGGG-CGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *** *
14297279 GCCTTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14297344 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * * *
14297409 GACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGGGGTTCGGGATTTTGTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * *
14297474 CGGAAAGAGTTTTAGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * * *
14297539 AAATTTAGCTAAATACTAGAAGTGTATAAGATTTTATGACAATTTGAAAAAAGTGTCACCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14297604 AAACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
584 AAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14297668 TTCTCTAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
** * *
14297733 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCG-CAAGTCAGGTTCTC
714 CATGTGCGCACA-CCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * *** * *
14297797 CGGCGATGCTCTGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCA
777 CGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * ** ** ** *
14297862 GTATGTGCTGCCACAACCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATA
842 GCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14297922 CTTAGACTGGGAATGAACTCCATATCCCTAAGTTAACCCACGAAACAAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * **
14297987 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCATTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * ** ** * *
14298052 TGCTGCCGTAACCCTCAGT-TTGATCCAATCGTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCACTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14298116 ACCGATGAAACGAGC-GG-CCGGGC-A---GGCACTACGCCGACTAGAGAGACGGGATGTGCAAG
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
14298175 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
14298240 TTTTCTAGCTTGTAATTTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
** *
14298305 ACTCAATTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTTAAAATTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTT
* * *
14298370 -GGAAGG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTAGGCGA-AA
454 CGGAAGGAG-TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAA
* *
14298431 AAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14298496 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
582 TCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14298561 AGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * ** * *
14298626 ATCATGTACGTACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCG-CAAGTCAGGTTC
712 ATCATGTGCGCACA-CCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTC
* * *** * *
14298690 TCCGGCGATGCTCTGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCAAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * ** ** ** *
14298755 CAGTATGTGCTGCCACAACCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATA
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14298817 CTTAGACTGGGAATGAACTCCATATCCCTAAGTTAACCCACGAAACAAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * **
14298882 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCATTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * ** ** * *
14298947 TGCTGCCGTAACCCTCAGT-TTGATCCAATCGTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCACTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14299011 ACCGATGAAACGAGC-GG-TCGGGC-A---GGCACTACGCCGACCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
14299070 CCGTGGATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
14299135 TTTTCTAGCTTGTAATTTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* * *
14299200 ACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTT-
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * *
14299264 GGAAGG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGTAGGCGA-AAA
455 GGAAGGAG-TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAA
*
14299326 AAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14299391 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
583 CAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14299456 GTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * **
14299521 TCATGTGCCCACACCCCCT-GACCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGG---T--
713 TCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
14299580 -----T-CTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAG
778 GACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14299639 CATGTACTGTCGCAACCCTC-G----G--------T---CT-GG--T---CT--G-AT-
843 CATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
14299672 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
14299737 CGGCCAGAGGGGCAAGATGCGCAAGTCGGGGATCGGTCGGGTTCCCTTCTGCGCGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* ** *
14299802 TGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14299867 CCGATGAAACGAGCAGGCAGACGGGCGGGCGGGTACTACGCCAGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGC-GGGAG-CGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14299932 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACTTCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
14299997 TTTTTATTGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * * *
14300062 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCTG-GATTTTGTAAAATTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTT
* ** ** *
14300126 TCGGACA-GAGTTTTGGCTGCAAACTTGGTAGACGTGATCCTCATATTTTTGTTGGCATGCATAA
453 TCGGA-AGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14300190 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14300255 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * **
14300320 AGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * ** *
14300385 ATCTTGTGGGCACACCCCCCGGCCCCCCTGATCG-CTGGAACCCCAATGCCG-CTGGTCAGGTTC
712 ATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTC-GGAACCCCAATGCCGTC-GGTCAGGTTC
* * * ** * *
14300448 TACGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
14300513 CAGCATGTGCTGTCGCAACCCTCGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * *
14300575 CTTAGACAGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
14300639 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTTTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
* * * ** **
14300704 CTTCTACCGCAACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * * *
14300769 ACCGACGAAACAAAAAGGCGAGCAGGCGA----GTAGTACACCGACTAGAGAGACGGGATGCGCA
195 ACCGACGAAAC-GAGCGG-GAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *** *
14300830 AGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
14300895 ATTTGTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * * *
14300960 CGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGATTTGTGATATTTTT-AAATTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGAT-TTTTTAAAATTTT
14301024 TT-GGAAGGAGGTTTT-GCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
452 TTCGGAAGGA-GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
14301086 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTT-AGAAAAAGTGTCCCCA
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCA
* * * * *
14301150 TTTCAGACACTTTAATGGCTATTGGTAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTG
580 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * **
14301215 TGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATGGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * ** * * * *
14301280 ACATCCTGTGTGCACACCCCC-CGACTGCACCGATCGTTGGAACCCCAATGCCGCCAGTCAGG-T
710 ACATCATGTGCGCACACCCCCTAG-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * ** *
14301343 -T----C--T-CT--G--G-TGATGCTCCGGTGAAGAAAAATGCGGGCACTA-CACCGGCCAGAG
774 CTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGC-GGCACCAGCACATGCCCGAG
* * * ** * * * **** ** * * * *
14301394 ---AG-ACGGGATG-AACAAGTCGT-GGATCGA-TAGGGTGGTAG-GTGGGTTTAGGCACATCTT
838 CCCAGCATGTGCTGCCGCAA-CCCTCGG-TCTAGTCCAATCTTAGACTGGG--AATG-A-A-CTC
*
14301451 CATAT-
896 CGTATG
** ** * ** * * * ** * *
14301456 -TTCTACGTGCCAATG-CCATTTTTATGGCT-TGTAAATTCA-TACAA--TG-GT-C---C-CTT
1 CTTAGAC-TGGGAATGAAC-TTCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGC-T
* ** *** * * ** * **
14301509 AAGCCTTCACATGAAGTTTC---ATG-GCAAGAC---GA-C--TC--AT---TTTCTA-TTTTTC
62 CAGCCGGC-CA-G-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT-
** * *** * * * * ** * * *
14301558 ACC-AT--T--T-TTG-AA-ACTTTTTACGGTTCGGGATTTTTTAAAAGTTTTTCGGAA-GGAGT
123 ACCGATCCTGCTGCCGCAACCCTCACTCCAG-TC-TGA--TCTT---AG--ACTGGGAATGAACT
* * * *** * * * * ** **** ** *
14301614 --TTTTGCC----CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCATAAAAAAT
179 CCGTATGCCTAAGCCAACCGACG-AAAC--GA-GC-GGGA-----GCGGGCGA-GCGGGCACTAC
** * * * *** ** *** * ** ***** ***
14301672 TTCAGCTA-A-AAACTCAAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTC
233 GCCGGCCAGAGAGAC-GGGA-TGCGCAAG-CCGTG-GATCGATAGGGTGGTAG-GT--GGGTTT-
* * ** * * ** ** * *****
14301734 AGACAC-T-TTAATGGCTACTGGCA-GCAAACCTGTAAAATCTTGAAT-GCTCTTTAAGGGGGT-
290 AGGCACATCTTCAT-ATTTCT-GCATGCCAA--TG--CCAT-TTTTATGGCT-TGTAAATTCATA
* * * ** * * * * *
14301794 --GTGAGT-TCTTGAGGTTTCATGAGGGATAGGGGGCTAATATAATGGCCAAGTACCAGCAC---
347 CAATG-GTCCCTTAAGCCTTCA-CA-TGA-A----G-T--T-TCATGG-CAAG-ACGA-CTCGTT
* **** * * ***** ** ** ***** *
14301853 --CCATGGCACATC-ATGTGTGCACACCCAC-CCCCCCGGCCCCCCGATCGCCGAAGCCCCAATG
397 TTCTATTTTTCA-CGATTTTTG-A-A---ACTTTTTGCGG-TTCGAGATTTTTTAA-----AATT
* ** ** * * * * * ** *** **** *
14301914 CTGCCAGTCAGG-TTCTCCGTTGATGCTCC-AGCGATGGT-GCCCCGA-CGAAG-AAAAATG-CG
450 TTTTC-GGAAGGAGT-T---TT-A-GCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * * * * * * * *** * *
14301973 GCA--C-C-AACACATGC-CCT--GAGCCCAGTATGTGCTGTCGTAA-CCCTTG-GTCCAGTTCG
507 GCATGCACAAAAAAATTCAGCTAAAAACTC-G-AAGTG-T-AC--AAGATTTTGTGACCA-TTTG
**** ** *** * * * ** * * *** *** *
14302029 ATCTTAGACT-GGGA-AT-GAACTCCGT-AT-GCTTAGACTGGGAATGAACTCTGT-ATGCCTAA
565 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGC-T--ACTAGCAGCAAAC-CTGTAAAATCTCA
** * ** * * * ** ** * *
14302088 GGCAACCCAC-GAAACGGGCGTGTGGGTGCTC-A-GTCGGCCCGAGGGGT-GGGATGCACAAGCC
626 ---AATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTG-ATGAGGGATAGGG-GGC-CAA---
*** ** ** ** * * * * * * * **
14302149 GGGGATCGGCCGGGT-CCCCCTCTGCATGTTGACA-ACCCTACTGC-CACA-ACCCTCAGTCCGG
681 -TATAAGGGCCAAGTACCAGCAC-CCA---TCACACATCAT-GTGCGCACACCCCCT-AG-CCCC
* * * * *** * * * * * * ***
14302210 TCTGATCCT-AG-ACTGGGAATGAAC-TCTG-CATG-CCTAAGCCAACCGACGAAACGAGCG-TG
738 CCCGATCGTCGGAAC-CCCAATG-CCGTCGGTCAGGTTCT---CCGA-CGATGCTCCGA-CGATG
* * * * * ** * * * ** *
14302269 CG-G-GCGGGCG-GGCACTACGCCG-ACCAG-AGA-GACGAGATGCGCCAGC-CGTGGATCAATA
796 -GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATG-CCCGA-GC-CCAGCATGT-G--C--T-
** ** ** * * * * * *** * * *
14302327 GGGTGGTA-GGTGGGTTTAG-GCACATCTTCATATTTCTACGTGCCAATTCC--ATT
851 -GCCGCAACCCTCGGTCTAGTCCA-ATCTT-AGACTGGGA-ATG--AACTCCGTATG
* * ** ** * * * * ** *
14302380 TTTATGGCTTGTAAATTCA-TAC-AATGGTCCTTTAAG-C--CTTCACGTGAA-GTTTCATGGCA
1 CTTA-GAC-TGGGAATGAACTTCGTAT-G-CC--TAAGTCAAC-CCACG-AAACG-AGCGT-GC-
* ** **** * **** ** ** * ** ** * ****
14302439 AGATGACTCA-TTTTCTA-ATTTTCATGATTTTTG-AA-AC---TTTTTGT-GGTTCAGGAT-T-
55 GGGCG-CTCAGCCGGCCAGAGGGGCGGGA--TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA
** ** ** * * ** * * *
14302494 --TTTTA-AAATTTTTTCGGAAGCAACCCTCGCTTCGGTCTGATCTTAGACTGGGAATGAACTCC
117 CGTGCTACCGA-TCCTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCC
* * * ** *
14302556 GTATGCCTAAGCCAACCGACGGAACGAGC-GGA-CGGGCGCGTGGG--C-A----GG-CA-CTAC
181 GTATGCCTAAGCCAACCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAG
* * * * *
14302610 AC-CGAT---TAA-----AGA--GA-CGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTG
246 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
14302663 CATGCCAATACCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
311 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGT
* * * * * *
14302728 TTCATGGAAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
376 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTT
* * * * * * *
14302793 TTTAAAATTTTATCGGAAGGCGTTTTGGCCCCAAACGTGGTAGACATGAGCCTTTTATTTTT-TT
441 TTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * *
14302857 CGGCAAGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATGTTGAGCCCATTTGAAAAA
506 -GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
14302922 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAGAATCTCAAATGCTCTT
570 AGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
14302987 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGCAATATAAGGGCCAAGTACCAG
635 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * * ** *
14303052 CACCCCTCGCACATCATGTGCACATAGCCCTCTGGCCCCACCGATTATCGGAACCCCAATTCCGT
700 CACCCATCACACATCATGTGCGCACA-CCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGT
* * * ** * * *
14303117 CGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCACGACGAAGAAAAATACGACACCAACAC
764 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* * * * ** **
14303182 ATGCTCGAGCCCAGCATGTGCTACCGTAATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
829 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAAC
*
14303247 TTCGTATG
894 TCCGTATG
* * * * * * *
14303255 CTTAGACTGGGAATGAACTTTGTATGCCTCAGTCAGCCCATGAAACGAGCGTGAGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
14303320 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * *
14303385 TACTGCCGTAACCCTCACTCCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14303450 CCGACGAAACGAGTGGACGGGCGGGC-AGGCGAGCATTACGCCAGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGCGG--GAGCGGGCGA-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
14303514 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATGTCAGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
14303579 ATTTTTATGGCTTATAAATTCATATAATCGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
*
14303644 CGACTCGTTTTCTATTTTTCACGAATTTTGAAACTTTTTGCGAG-TCGAGATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCG-GTTCGAGATTTTTTAAAATTTT
* * * *
14303708 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTTTATTTTTTTTGGCATGCACAA
452 TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14303773 AAACATTTC-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
14303837 TTCAAACACATTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
581 TTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14303902 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
** * ** *
14303967 CATCATGTGCGCACACCCCCCCGACCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
711 CATCATGTGCGCACACCCCCTAG-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
*** * *
14304032 T-C--C---G----G-CGATGGTGCCCCAACGAAGAAAAATGTGGCACCAACACATGCCCGAGCC
775 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** ** *
14304086 CAGCATGTGCTGCTGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
14304148 CTTAGACTGGGAATGAA-TTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
14304212 TCGACC-GAGGGATGGGATGCGCAAGTCGGGGATCGATAGGGT-CCCCTTTACGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
* * * * * * * *
14304275 CTACTACCGCAACCC-CTAGTTCGGTCTGATCTTAGGCTGGGAATAAACTCCATATGCCTAAGCC
130 CTGCTGCCGCAACCCTC-ACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
14304339 AACCGACAAAATGAGCGAGCGGGCGGGCGGGCGGGCACCACACTGGCCAGAAAGACGGGATGCGC
194 AACCGACGAAACGAGCG-G-GAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
14304404 AAGCCATGGATCGTTGGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATACCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
14304469 CATTTTTATGGCTTTTAAATTCATACAATGGTCCTTTAAGCCTTCACTTGAAGTTTCATTGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* * *
14304534 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* * * *
14304599 TTTGAAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
452 TTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
14304663 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14304728 TCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 TCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
14304793 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGAACCAGCACCAATCGA-A
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-ACA
** * * *
14304857 CATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCT
711 CATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
14304922 CTGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
776 CCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * ** ** * * *
14304987 AGCATGTGCTACTGCAACCCTCTGTCCGGTCTGAT-TTAGACTGGGAATGAATTTCGTGTG
841 AGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14305047 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * * * *
14305112 CGGCCAGAGGGGTAGGATGCACAAGCCAGGGATCAGCCGGGTGCCCCTCCACATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* ** *** * *
14305177 TGCTACCGCAACCCTCGGTTTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTATGCCA
131 TGCTGCCGCAACCCTCACTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14305241 ACCGATGAAACGAGCGGGTGGCCGGGC-AGGTGGGCACTGCGTCGACCAGAGAGATGGGATGCGC
195 ACCGACGAAACGAGCGGG-AG-CGGGCGA-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
14305305 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
14305370 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
*
14305435 ACGA--C----TC-A-TTTT--C------T---A---TTT-C---TC-ACGA-TTTTTAAAACTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTT
* * * * * *
14305472 TTTCGGAAGGAG-TTT-GGCCCAAACTTCGTAGATGTGATCCTCT-TAATTTTCTTGGCACGCA-
451 TTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTGTTGGCATGCAC
* *
14305533 TAAAAAATTCAGCT-AAAACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
14305596 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGT
580 TTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGT
* *
14305661 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
644 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
** * ** * * *
14305726 CACATCATGTGCGCACACCCCCGGGCCCCCCCGATCGCCAAAACTCCAATGCCGCCGGTCAAGTT
709 CACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* ** * *
14305791 CTTC-A--A---T-----GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGC
774 CTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * ** *
14305845 CCAACAAGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
839 CCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14305908 CTTAGACTAGAAATGCACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14305973 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCTCTCTGCATGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * * *
14306038 TACTGCCGTAACCCTCACTCCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGA
131 TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14306103 CTGACGAAACGAGCGGGCGGGGGGGCGGGCGGGTACAACGTCGGCCAGAGAGAC
196 CCGACGAAACGAGC-GG-GAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGAC
14306157 TCATTTTCTA
Statistics
Matches: 15838, Mismatches: 3096, Indels: 2133
0.75 0.15 0.10
Matches are distributed among these distances:
853 5 0.00
854 4 0.00
855 191 0.01
856 7 0.00
857 5 0.00
858 2 0.00
859 13 0.00
860 79 0.00
861 225 0.01
862 12 0.00
863 212 0.01
864 44 0.00
865 486 0.03
866 286 0.02
867 67 0.00
868 71 0.00
869 17 0.00
870 194 0.01
871 245 0.02
872 68 0.00
873 55 0.00
874 45 0.00
875 57 0.00
876 50 0.00
877 100 0.01
878 36 0.00
879 109 0.01
880 43 0.00
881 106 0.01
882 290 0.02
883 743 0.05
884 86 0.01
885 20 0.00
886 306 0.02
887 279 0.02
888 244 0.02
889 73 0.00
890 241 0.02
891 370 0.02
892 384 0.02
893 388 0.02
894 627 0.04
895 1041 0.07
896 313 0.02
897 332 0.02
898 411 0.03
899 580 0.04
900 524 0.03
901 1079 0.07
902 1708 0.11
903 520 0.03
904 613 0.04
905 76 0.00
906 9 0.00
907 158 0.01
908 340 0.02
909 22 0.00
910 9 0.00
911 2 0.00
912 9 0.00
913 15 0.00
914 20 0.00
915 18 0.00
916 15 0.00
917 28 0.00
918 12 0.00
919 12 0.00
921 5 0.00
922 5 0.00
923 5 0.00
924 9 0.00
925 16 0.00
926 17 0.00
927 19 0.00
928 8 0.00
929 3 0.00
930 6 0.00
931 19 0.00
932 14 0.00
933 33 0.00
934 41 0.00
935 55 0.00
936 35 0.00
937 27 0.00
938 37 0.00
939 40 0.00
940 19 0.00
941 24 0.00
942 16 0.00
943 8 0.00
944 6 0.00
945 2 0.00
946 10 0.00
947 12 0.00
948 19 0.00
949 6 0.00
950 10 0.00
951 14 0.00
952 11 0.00
953 12 0.00
954 14 0.00
955 29 0.00
956 15 0.00
957 24 0.00
958 12 0.00
959 8 0.00
960 9 0.00
961 4 0.00
962 10 0.00
963 5 0.00
964 8 0.00
965 6 0.00
966 23 0.00
967 3 0.00
968 3 0.00
969 7 0.00
970 7 0.00
971 4 0.00
972 8 0.00
973 15 0.00
974 18 0.00
975 20 0.00
976 9 0.00
977 22 0.00
978 17 0.00
979 20 0.00
980 9 0.00
981 18 0.00
982 15 0.00
983 8 0.00
984 6 0.00
985 3 0.00
986 1 0.00
989 3 0.00
990 6 0.00
991 13 0.00
992 12 0.00
993 11 0.00
994 21 0.00
995 18 0.00
996 31 0.00
997 2 0.00
998 5 0.00
999 6 0.00
1000 9 0.00
1001 4 0.00
1002 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
TGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
GATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14288854 original size:26 final size:26
Alignment explanation
Indices: 14288825--14288877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14288815 CCAGTCCAAT
14288825 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14288851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14288877 C
1 C
14288878 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14291687 original size:26 final size:26
Alignment explanation
Indices: 14291648--14291700 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14291638 CTGGTCTGAT
14291648 CTTAGACTGAGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
*
14291674 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATCAACTCCGTATG
14291700 C
1 C
14291701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:14292563 original size:26 final size:26
Alignment explanation
Indices: 14292534--14292583 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14292524 CCGATCCGAT
14292534 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
14292560 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14292584 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14294336 original size:26 final size:26
Alignment explanation
Indices: 14294297--14294348 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14294287 CCAGTCTGAT
14294297 CTTAGACTGAGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
14294323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
14294349 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:14295229 original size:26 final size:26
Alignment explanation
Indices: 14295200--14295252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14295190 CTGGTCCGAT
*
14295200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14295226 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14295252 C
1 C
14295253 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14296131 original size:26 final size:26
Alignment explanation
Indices: 14296102--14296154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14296092 CCGATCTGAT
*
14296102 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14296128 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14296154 C
1 C
14296155 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14297030 original size:26 final size:26
Alignment explanation
Indices: 14296994--14297046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14296984 CCAGTCTGAT
14296994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14297020 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14297046 C
1 C
14297047 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14297932 original size:26 final size:26
Alignment explanation
Indices: 14297896--14297946 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14297886 CCGGTCTGAT
*
14297896 CTTAGACTGGGAATGAACTCTATATA
1 CTTAGACTGGGAATGAACTCCATATA
14297922 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
14297947 CCCTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:14298398 original size:895 final size:895
Alignment explanation
Indices: 14293430--14306120 Score: 11265
Period size: 895 Copynumber: 14.2 Consensus size: 895
14293420 CTGGACTGAT
* * * * * *
14293430 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCGCAAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * *
14293495 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCTTTTTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * *** * *
14293560 TGCTACCGCAACCTTC-GATTTGGTTTGATCTTAGATTGGGAATGAACTCCGTAAGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * * *
14293624 ATCGATGAAACGAGTAGG-CGGG-GGGCACTACGTCGGCCAAAGAGATGGGATGCGCAAACCATG
195 ACCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14293687 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * * * *
14293752 TGACTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAACATGACTCA
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
14293817 TTTTTTATTTTTCACGATTTTTGAAAGTTTTTACGGTTCGGGATCTTTTAAAATTTTTTCGGAAG
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAG
*
14293882 GAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* **
14293947 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAACCTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
14294012 TTTAATGGCTATTGGGAGCAAACCTGTAAAATCTCAAATGCTTTTTCAGGGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * *
14294077 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCACACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
14294142 CACACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATG
714 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATG
* * * * * * * *
14294207 CTCTGACGA-GGTACCCTGATGAAGAAAAATACGGCACCAACACATACCGGAGCGCAGCATGTGC
779 CTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
14294271 TGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGAGAATCAACTCCGTATG
844 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14294323 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGATCGTGCGGGCAG-TTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
* * * * *
14294387 CCGGCCAGAAGGGCGGGATGTGCAAGCCAGGGATTGGTCAGGTCCCCCTCTGCATGCTGTCGA-C
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATC
* * * * * * * *
14294451 CTACTGCTGTAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14294516 ACCGATGAAACGAGCGGGCGGGCGGACAGACGGTCACTACACCGGCCAGATAGACAGGAAGCGTA
195 ACCGATGAAACGAGCGGGC---CGGGC--A-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCA
* **
14294581 AGCCTTTAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
14294646 ATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
14294711 TGACTCCTTTTATATTTTTCATGATTTTTGAAAGTTTTTACGGTTTC-AGATTTTTTAAAATTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAA-TTT
* *
14294775 TTTGGAAGTAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAA
446 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
14294840 AAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14294905 TCAGACACTTTAATGGCTAATGGCAGCAAACCTATAAAATCTCTAATGCTCTTTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14294970 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
641 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** ** *
14295035 ATCATGCGCGCACACCCCCCCGGCCCCCCCAATCACCGGAACCCCAATGTTG-TCGGTTAGGTTC
706 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTC
* * ** * * *
14295099 TCCGGTGATGCTCTGGCGACAGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGTCCGAGCC
769 TCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * *
14295164 CAGTGTGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
834 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14295226 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCGCTCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
14295291 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTGTATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* ** * *
14295356 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCAAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * *
14295421 CCGACAAAACGAGCGGGCAGGCGGGCAAGCACTACGTCGGCCAAAGAGGCGGGATGCACAAGCTG
196 CCGATGAAACGAGCGGGC---CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
14295486 TGGATCGATAGAGTGGTAGGTGGGTTTAACCACATCTTCATATTTCTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14295551 TATGGCTTGCAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * **
14295616 CGTTTTCTAATTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTTGAATTTTTTCGG
388 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTT-GG
* * *
14295681 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
14295746 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14295811 CACTTTAATGGCTACTGGGTAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 CACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
14295876 CTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
645 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * *
14295941 TGTGCGCACACCCCCTGGCCCCCCCGATCGTTAGAACCCTAATGCTGCTGGTCAGGTTCTCCGCT
710 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG-G
* * * * *
14296006 CGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCAGCA
774 CGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
14296071 TGTGCTGTCGCAACCCTCGATCCGATCTGATCTTATACTAGGAATGAACTCCGTATG
839 TGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
14296128 CTTAGACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14296193 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCCGTCAGGTCTCCCTCTACGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * * * * *
14296258 TACTACTGCAACCCTCGATTC-GGTCCAATCTTAGATTGGGAATAAACTCTGTATGCGTAAGCCA
131 TGCTGCCGCAACCCTC-AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14296322 ACCGATGAAACGAGCGGG-CTGGCAAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
195 ACCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
14296386 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCCTGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
14296451 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
14296516 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGAAAG
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAG
** * * * * * *
14296581 GAGTTTTTTCCTCAAACTTGGTAGATGTGATCCTTGTA-GTTTGTTGACATGCACAAAAATATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* * *
14296645 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACAA
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14296710 TTTAATGGCTACTGGCCGCAAACCTGTAAAATCTTAAATGCTCTTTAA-GGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
14296774 AGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * * *
14296839 CGCACACCCCCCGGTCCCCCCGATCACCGAAACCCTAATGCCGCCGGTTAGGTTCTCCGGCGATG
714 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATG
* * * * * * *
14296904 CCCTGGCGATGATGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGC
779 CTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
14296969 TACCGCAACCCTC-GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14297020 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
14297085 CGGCTAGAGGGGCGGGATGCTCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
** * *
14297150 TGCTGCCATAACCCTTAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14297215 CCGAAGAAACAAGCGGGCGGCGGGCCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
196 CCGATGAAACGAGCGGGC--C--G--GGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *** *
14297280 CCTTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTATGTGCCAATACCAT
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
14297345 TTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
14297410 ACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTGGGGTTCGGGATTTTGTAAAATTTTTTC
385 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-
* * * *
14297475 GGAAAGAGTTTTAGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTGGCATGCACAAAAA
449 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * * * * *
14297540 AATTTAGCTAAATACTAGAAGTGTATAAGATTTTATGACAATTTGAAAAAAGTGTCACCATTTCA
514 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14297605 AACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
14297669 TCTCTAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
644 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* **
14297734 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCGCAAGTCAGGTTCTCCG
709 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
* * * *
14297799 GCGATGCTCTGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGT
773 GCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * ** *
14297864 ATGTGCTGCCACAACCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATA
838 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14297922 CTTAGACTGGGAATGAACTCCATATCCCTAAGTTAACCCACGAAACAAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** **
14297987 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCATTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * *
14298052 TGCTGCCGTAACCCTCAGTTTGATCCAATCGTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14298117 CCGATGAAACGAGC-GGCCGGGCAGGCACTACGCCGACTAGAGAGACGGGATGTGCAAGCCGTGG
196 CCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14298181 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTCT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * **
14298246 AGCTTGTAATTTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAA
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* **
14298311 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTTAAAATTTTTTGGAAGG
391 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTGGAAGG
* *
14298376 -GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGTAGGCGA-AAAAAAATT
455 AG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATT
* *
14298438 CAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
14298503 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
14298568 AAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
648 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * **
14298633 ACGTACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCATTGCCGCAAGTCAGGTTCTCCGGCGA
713 GCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGA
* * * *
14298698 TGCTCTGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGTATGT
777 TGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * ** *
14298763 GCTGCCACAACCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATA
842 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14298817 CTTAGACTGGGAATGAACTCCATATCCCTAAGTTAACCCACGAAACAAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** **
14298882 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCATTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * *
14298947 TGCTGCCGTAACCCTCAGTTTGATCCAATCGTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14299012 CCGATGAAACGAGC-GGTCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
196 CCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
14299076 ATCAATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTCT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * *
14299141 AGCTTGTAATTTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
14299206 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTTGGAAGG-
391 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGA
* *
14299270 GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGTAGGCGA-AAAAAAATTC
456 G-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTC
*
14299333 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
14299398 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
14299463 AGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * * *
14299528 CCCACA-CCCCCTGACCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGG-T-T----C--T-
714 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATG
* * * *
14299583 C-C-GACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTA
779 CTCTGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
14299645 CTGTCGCAA-CC-C--T-C-G---G----T---CT-GG--T---CT--G-AT-
843 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
14299672 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * ** *
14299737 CGGCCAGAGGGGCAAGATGCGCAAGTCGGGGATCGGTCGGGTTCCCTTCTGCGCGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
** *
14299802 TGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14299867 CCGATGAAACGAGCAGGCAGACGGGCGGGCGGGTACTACGCCAGCTAGAGAGACGGGATGCGCAA
196 CCGATGAAACGAGC-GG--G-C---CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14299932 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACTTCTTCATATTTCTGCATGCCAATGCCA
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14299997 TTTTTATTGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14300062 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCTGGATTTTGTAAAATTTTTT
384 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** ** * *
14300127 CGGACA-GAGTTTTGGCTGCAAACTTGGTAGACGTGATCCTCATATTTTTGTTGGCATGCATAAA
449 -GGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
14300191 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14300256 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
14300321 GTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
642 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14300386 TCTTGTGGGCACACCCCCCGGCCCCCCTGATCG-CTGGAACCCCAATGCCGCTGGTCAGGTTCTA
707 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCTGGTCAGGTTCTC
* * * *
14300450 CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCA
771 CGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
14300515 GCATGTGCTGTCGCAACCCTCGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
836 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14300575 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14300640 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTTTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * *
14300705 TTCTACCGCAACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** * * * * *
14300770 CCGACGAAACAAAAAGG-CGAGCAGGCGAGTAGTACACCGACTAGAGAGACGGGATGCGCAAGCC
196 CCGATGAAACGAGCGGGCCGGGCAGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *** *
14300834 GTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
14300899 GTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14300964 TCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGATTTGTGATATTTTT-AAATTTTTTGG
387 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT-TTTTTAAAATTTTTTGG
*
14301028 AAGGAGGTTTT-GCCCCAAAC-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
451 AAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
14301091 ATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTT-AGAAAAAGTGTCCCCATTTCA
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCA
* * *
14301155 GACACTTTAATGGCTATTGGTAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * *
14301220 TCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATGGCACATC
644 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** * * ** *
14301285 CTGTGTGCACACCCCCCGACTGCACCGATCGTTGGAACCCCAATGCCGCCAGTCAGGTTCTCTGG
709 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGG
* * ** *
14301350 TGATGCTC---C---GGT--------GAAGAAAAATGCGGGCACTA-CACCGGCCAGAG---AG-
774 CGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGC
* * * ** * * * ** * ** * * * * *
14301396 ACGGGATG-AACAAGTCGT-GGAT-CGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATAT-
838 ATGTGCTGCCGCAA-CCCTCGG-TCCGGTCTGATCTTAGACTGGG--AATG-A-A-CTCCGTATG
** ** * *** * * * ** * *
14301456 -TTCTACGTGCCAATG-CCATTTTTATGGCT-TGTAAATTCA-TACAA--TG-GT-C---C-CTT
1 CTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGC-T
* ** *** * *** * *** * * *
14301509 AAGCCTTCACATGAAGTTTC---ATG-GCAAGAC---GA-C--TCATTTTCTATTTTTCA-CCAT
62 CAGCCGGC-CA-G-AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGC--
* * ** ** ** *** *** * ** ** * * * * * *
14301563 TTTTGAAACTTTTTACG-GTTCGGGA-TTTTTTAAAAGT-TT---TTCGGAA-GGAGT--TTTTG
122 TGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAA-TCTTAGACTGGGAATGAACTCCGTATG
* * ** * ** * ** ** ** * ***
14301619 CC----CCAAAC-TTGGTA-GA-CGTGATCCTTGTA---TTTTTGTTGG-CATGCATA-A-AAAA
186 CCTAAGCCAACCGATGAAACGAGCG-G-GCCGGGCAGGCACTACGCCGGCCA-G-AGAGACGGGA
** ***** * *** * * * * * *
14301671 T-TTC-AGCTAAAAACTC-A-A-AGT-GTA-CAAGATTTTGTG-ACCAT-TTGAAAAAAGTGTCC
247 TGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTAG-GCA-CATCTT---CATA-TTTCT
* ** * * * * * * * *
14301727 CCATTTC-A-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGAATGCT-CTTTAAG
305 GCATGCCAATGCCATTTTTATGGCT--T----GTAAA--T-TCATA-C---AATGGTCCCTTAA-
** * * * ** * * *** ** * * *** * ****
14301789 GGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGC-TAATATAATGGCCAAG-TACCAGCA
356 -GCCT-TCA---CGTGAAGTTTCATG-GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-A
** * *** * * ** ******* *** ***
14301852 CCCATGGCAC--ATC---ATGTGTGCACACCCACCCCCCCGGCCCCCCGA-TCGCCGAAGCCCCA
414 AACTTTTTACGGTTCGGGAT-TTTTTA-A---AATTTTTTGG---AAGGAGT-TTTG--GCCCCA
* ** * ** ** *** *
14301911 ATGC-TGCCAGTCAGGTTCTCCGTTG-A--TGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGC
468 A-ACTTGGTAG--ACGTGATCC-TTGTATTTTTTTTGGC-A---TG---C-AC-AA-AAAAATTC
* * *** * * * **** *
14301972 GGC-ACCAACACAT-GCCCTG-AGCCCAGTATGTGCTGTCGTAACC-CTTG-GTCCAGT-T--CG
519 AGCTA--AAAAC-TCGAAGTGTA--CAAG-AT-T--T-T-GTGACCATTTGAAAAAAGTGTCCCC
* * * *** *** *
14302029 ATCTT-AGACTGGGA-ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGT-ATGCCTAAGGC
573 AT-TTCAGAC----ACTTTAA-T--G---GC-T--ACTGGCAGCAAAC-CTGTAAAATCTCA---
** * ** * * * ** ** * * ***
14302091 AACCCAC-GAAACGGGCGTGTGGGTGCTC-A-GTCGGCCCGAGGGGT-GGGATG-CACA-AGCCG
620 AATGCTCTTTAA-GGGGGTGTGAGTTCTCAAGGTTTG-ATGAGGGATAGGG-GGCCA-ATATAAG
* * * * ** * * ** *
14302150 GG-GATCG-GCCGGGTCCC--C-CTC-TGCATGT-TG-ACAACCCTACTGCCACAACCCTC-AGT
681 GGCCA-AGTACCAGCACCCATCGCACAT-CATGTGCGCAC-ACCCCCCGGCC-C--CCC-CGA-T
* * * * ** * ** *
14302206 CCGGTCTG-A-TCCTA-G--ACTGGGAATGAACT-CTGC-ATGC-CT-A--A----GCCAACCGA
738 -C-GTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCC--CCGA
*** * ** * * * * * * * *
14302256 CGAA-ACGAGCGTGCGGGCGGGCGGGCAC-TACGCCGA-CCAGAGAGACGAGATG-CGCCAGCCG
799 CGAAGA--AAAATGC-GGC--ACCAGCACATGC-CCGAGCC-CAG-CATGTGCTGCCG-CAACCC
** ** * ** * * * * *
14302317 T-GGAT-CAATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATAT-
855 TCGG-TCCGGTCTGATCTTAGACTGGG--AATG-A-A-CTCCGTATG
** ** ** *** * * * ** * * * ****
14302360 -TTCTACGTGCCAAT-TCCATTTTTATGGCT-TGTAAATTCA-TACAATG-GTCCTTTAAGC-CT
1 CTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGA-AACGAG-CGTGCGGGCGC-
* * ** * ** ****** * * *** ****
14302419 TCA--CGTG-AAGTTTCA-TGGCAAGATGACTCATTTTCTAATTTTCATGATTTTTGAAACTTTT
61 TCAGCCG-GCCAG----AGGGGCGGGATG-CGCA--AGCCGGGGATC--G---GTCGGGTCCCCC
* ** * ** ** * * ** **
14302480 TGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGCAACCCTC-G-CTTCGGTCTGATCTTAGACT
113 TCT-G--C---ATGCTGT-CGA-TCCTGCTGCCGCAACCCTCAGTC-T-GGTCCAATCTTAGACT
* * * *
14302543 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGC-GGACGGGC--GC-GT--G--GG
168 GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGG
* * * ** * *
14302600 -CAG-G-CAC----T--AC-A-CCGAT-TAAAGAGACGGGTGGTAGGTGGGTTTAGGCGCATCTT
233 CCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTT
* *
14302653 CATATTTCTGCATGCCAATACCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
296 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
14302718 CACGTGAAGTTTCATGGAAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
361 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * * *
14302783 TTCGGGATTTTTTAAAATTTTATCGGAAGGCGTTTTGGCCCCAAACGTGGTAGACATGAGCCTTT
426 TTCGGGATTTTTTAAAATTTT-TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * * *
14302848 TATTTTTTTCGGCAAGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATGTTGAGCCCA
490 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
14302913 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAGAATCTCA
555 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
14302978 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGCAATATAAGGGCC
620 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * * **
14303043 AAGTACCAGCACCCCTCGCACATCATGTGCACATAGCCCTCTGGCCCCACCGATTATCGGAACCC
685 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCC
* * * * *
14303108 CAATTCCG-TCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCACGACGAAGAAAAATACG
749 CAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * *
14303172 ACACCAACACATGCTCGAGCCCAGCATGTGCTACCGTAATCCTCGGTCCGGTCTGATCTTAGACT
813 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
*
14303237 GGGAATGAACTTCGTATG
878 GGGAATGAACTCCGTATG
** * * * * * *
14303255 CTTAGACTGGGAATGAACTTTGTATGCCTCAGTCAGCCCATGAAACGAGCGTGAGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14303320 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * ** * * *
14303385 TACTGCCGTAACCCTCACTCCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14303450 CCGACGAAACGAGTGGACGGG-CGGGCAGGCGAGCATTACGCCAGCCAGAGAGACGGGATGCGCA
196 CCGATGAAACGA---G-CGGGCCGGGCAGGC-A-C--TACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
14303514 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATGTCAGCATGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
14303579 ATTTTTATGGCTTATAAATTCATATAATCGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
14303644 CGACTCGTTTTCTATTTTTCACGAATTTTGAAACTTTTTGCGAG-TCGAGATTTTTTAAAATTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG-GTTCGGGATTTTTTAAAATTTT
* *
14303708 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTTTATTTTTTTTGGCATGCACAA
447 TT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
14303773 AAACATTTC-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
511 AAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
14303837 TTCAAACACATTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
14303902 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACA
640 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
14303967 CATCATGTGCGCACACCCCCCCGACCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
705 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
* * *
14304032 T-C--C---G----G-CGATGGTGCCCCAACGAAGAAAAATGTGGCACCAACACATGCCCGAGCC
769 TCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** *
14304086 CAGCATGTGCTGCTGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
834 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14304148 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * **
14304213 CGACC-GAGGGATGGGATGCGCAAGTCGGGGATCGATAGGGT-CCCCTTTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * ** * * *
14304276 TACTACCGCAACCC-CTAGT-TCGGTCTGATCTTAGGCTGGGAATAAACTCCATATGCCTAAGCC
131 TGCTGCCGCAACCCTC-AGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * * *
14304339 AACCGACAAAATGAGCGAGCGGGCGGGCGGGCGGGCACCACACTGGCCAGAAAGACGGGATGCGC
194 AACCGA-TGAA--A-CGAGCGGGC---CGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
14304404 AAGCCATGGATCGTTGGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATACCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
14304469 CATTTTTATGGCTTTTAAATTCATACAATGGTCCTTTAAGCCTTCACTTGAAGTTTCATTGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** *
14304534 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTT
382 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTT
* *
14304599 TTTGAAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
446 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
14304663 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14304728 TCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * * * *
14304793 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGAACCAGCACCAATCGAAC
641 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14304858 ATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCG-TCAGTCAGGTTCT
706 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCT
* * ** *
14304922 CTGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
770 CCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
14304987 AGCATGTGCTACTGCAACCCTCTGTCCGGTCTGAT-TTAGACTGGGAATGAATTTCGTGTG
835 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14305047 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * ** * *
14305112 CGGCCAGAGGGGTAGGATGCACAAGCCAGGGATCAGCCGGGTGCCCCTCCACATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
* * * * * * *
14305177 TGCTACCGCAACCCTCGGTTTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTATGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14305242 CCGATGAAACGAGCGGGTGGCCGGGCAGGTGGGCACTGCGTCGACCAGAGAGATGGGATGCGCAA
196 CCGATGAAACGAGC--G-GGCCGGGCA----GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14305307 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCA
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
14305372 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
14305437 GACTCATTTTCTATTTCTCACGATTTTT-AAA------A-----C--------------TTTTTC
384 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * *
14305476 GGAAGGAG-TTTGG-CCCAAACTTCGTAGATGTGATCCTCT-TAATTTTCTTGGCACGCA-TAAA
449 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTTTTGGCATGCACAAAA
*
14305537 AAATTCAGCT-AAAACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14305600 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGTGA
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGA
14305665 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * *
14305730 TCATGTGCGCACACCCCCGGGCCCCCCCGATCGCCAAAACTCCAATGCCGCCGGTCAAG-T-T--
707 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCC
* * * * *
14305791 --C--T--TC-AATGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAA
772 GGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
14305849 CAAGTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
837 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14305908 CTTAGACTAGAAATGCACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14305973 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCTCTCTGCATGCTG-CTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTC-GATC
* * * * ** * * *
14306037 CTACTGCCGTAACCCTCACTCCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCG
130 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14306102 ACTGACGAAACGAGCGGGC
195 ACCGATGAAACGAGCGGGC
14306121 GGGGGGGCGG
Statistics
Matches: 9733, Mismatches: 1591, Indels: 983
0.79 0.13 0.08
Matches are distributed among these distances:
841 8 0.00
842 7 0.00
843 11 0.00
844 4 0.00
845 11 0.00
846 3 0.00
847 3 0.00
848 4 0.00
849 6 0.00
851 1 0.00
852 3 0.00
853 3 0.00
854 2 0.00
855 196 0.02
856 11 0.00
857 3 0.00
858 6 0.00
859 10 0.00
860 77 0.01
861 226 0.02
862 12 0.00
863 213 0.02
864 40 0.00
865 223 0.02
866 55 0.01
867 20 0.00
868 4 0.00
869 10 0.00
870 85 0.01
871 143 0.01
872 45 0.00
873 28 0.00
874 16 0.00
875 5 0.00
876 9 0.00
877 79 0.01
878 23 0.00
879 78 0.01
880 28 0.00
881 78 0.01
882 10 0.00
883 35 0.00
884 15 0.00
885 7 0.00
886 5 0.00
887 28 0.00
888 21 0.00
889 84 0.01
890 237 0.02
891 314 0.03
892 402 0.04
893 363 0.04
894 576 0.06
895 1023 0.11
896 152 0.02
897 364 0.04
898 248 0.03
899 572 0.06
900 510 0.05
901 1009 0.10
902 705 0.07
903 390 0.04
904 628 0.06
905 24 0.00
906 3 0.00
907 3 0.00
908 2 0.00
909 3 0.00
910 1 0.00
911 6 0.00
912 5 0.00
913 5 0.00
914 4 0.00
915 16 0.00
917 2 0.00
918 6 0.00
919 26 0.00
920 6 0.00
921 2 0.00
922 3 0.00
923 5 0.00
924 7 0.00
925 5 0.00
927 6 0.00
928 3 0.00
929 1 0.00
930 1 0.00
931 4 0.00
932 3 0.00
933 2 0.00
934 7 0.00
935 14 0.00
936 8 0.00
937 14 0.00
938 7 0.00
939 13 0.00
940 3 0.00
941 1 0.00
942 9 0.00
944 1 0.00
946 8 0.00
947 4 0.00
948 2 0.00
949 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCT
CTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14298827 original size:26 final size:26
Alignment explanation
Indices: 14298791--14298841 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14298781 CCGGTCTGAT
*
14298791 CTTAGACTGGGAATGAACTCTATATA
1 CTTAGACTGGGAATGAACTCCATATA
14298817 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
14298842 CCCTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:14300578 original size:26 final size:26
Alignment explanation
Indices: 14300549--14300601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14300539 CCAGTCCGAT
*
14300549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
14300575 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14300601 C
1 C
14300602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14302067 original size:26 final size:26
Alignment explanation
Indices: 14302031--14302083 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14302021 CCAGTTCGAT
14302031 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14302057 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14302083 C
1 C
14302084 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14303265 original size:26 final size:26
Alignment explanation
Indices: 14303229--14303281 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14303219 CCGGTCTGAT
14303229 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14303255 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14303281 C
1 C
14303282 CTCAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14304151 original size:26 final size:26
Alignment explanation
Indices: 14304122--14304174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14304112 CCGGTCCGAT
14304122 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14304148 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14304174 C
1 C
14304175 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14304622 original size:891 final size:895
Alignment explanation
Indices: 14302625--14306156 Score: 4529
Period size: 904 Copynumber: 4.0 Consensus size: 895
14302615 TTAAAGAGAC
* * * *
14302625 GGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATACCATTTTAATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
* *
14302690 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGATGACTCATTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* * * *
14302755 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTATCGGAAGGCGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * * *
14302820 GCCCCAAACGTGGTAGACATGAGCCTTTTATTTTTTTCGGCAAGCATAAAAAAATTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
14302885 ACTCGAAGTGTACAAGATGTTGAGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
14302950 CTACTGGCAGCAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
14303015 TGAGGGATAGGGGGGCAATATAAGGGCCAAGTACCAGCACCCCTCGCACATCATGTGCACATAGC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-C
* * * * * *
14303080 CCTCTGGCCCCAC-CGATTATCGGAACCCCAATTCCGTCGGTCAGGTTCTCTGGCGATGCTCCGA
455 CCCCCGGCCCC-CTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC--GC-A-G---CGA
* * *
14303144 CGATGGTGCCACGACGAAGAAAAATACGACACCAACACATGCTCGAGCCCAGCATGTGCTACCGT
512 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGT
* *
14303209 AATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
577 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
** * * *
14303274 TTGTATGCCTCAGTCAGCCCATGAAACGAGCGTGAGGGTGCTCAACCGGCCAGAGGGGCAGGATG
642 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATG
* * ** * *
14303339 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATGGATCCTACTGCCGTAACCCTCACT
707 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTACCGATCCTACTACCGCAACCCTCACT
* * *
14303404 CCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGACCGACGAAACGAGTGGACG
772 CCGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * ** **
14303469 GGCGGGCAGGCGAGCATTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATA
837 GGCGGGCAGGCGGGCACTAC-CTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* * *
14303529 GGGTGGTAGGTGGGTTTAGGCACATCTCCATATGTCAGCATGCCAATGCCATTTTTATGGCTTAT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
14303594 AAATTCATATAATCGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* *
14303659 TTTTCACGAATTTTGAAACTTTTTGCGAG-TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
131 TTTTCACGATTTTTGAAACTTTTTGCG-GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
14303723 GGCCCCAAACTTGGTAGACGTTATCCTTTTATTTTTTTTGGCATGCACAAAAACATTTC-GCTAA
195 GGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAA-AATTCAGCTAA
* *
14303787 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACATTAAT
259 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14303852 GGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTT
324 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
14303917 GATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
389 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
*
14303982 CCCCCCCGACCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC-C-G-G-CGATGG
454 -CCCCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCAGCGACGATGG
* ** * *
14304043 TGCCCCAACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCT
518 TGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCT
** * *
14304108 CAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTAT
583 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
** * ***
14304173 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGACC-GAGGGATGGGATGCGCAAG
648 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAG
* * * * * *
14304237 TCGGGGATCGATAGGGT-CCCCTTTACGTGCTACCGATCCTACTACCGCAACCC-CTAGTTCGGT
713 CCGGGGATCGATCGGGTCCCCCTCTACATGCTACCGATCCTACTACCGCAACCCTC-ACTCCGGT
* * * * * * * *
14304300 CTGATCTTAGGCTGGGAATAAACTCCATATGCCTAAGCCAACCGACAAAATGAGCGAGCGGGCGG
777 CTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * * *
14304365 GCGGGCGGGCACCACACTGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGTTG
842 GCAGGCGGGCACTAC-CTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* ** * *
14304420 GGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATACCAATGCCATTTTTATGGCTTTT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
14304485 AAATTCATACAATGGTCCTTTAAGCCTTCACTTGAAGTTTCATTGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* * * *
14304550 TTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTAAATTTTTTTGAAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
14304615 GCCCCAAACTTGCTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
14304679 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
14304744 CTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
14304809 TGAGGGATAGGGGGCCAATATAAAGGCCAAGAACCAGCACCAATCGA-ACATCATGTGCGCACAC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-ACACATCATGTGCGCACAC
* * *
14304873 CCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCTCTGGCGATGCTCCGAC
455 CCCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC--GC-A-G---CGAC
** * * *
14304938 GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCA
513 GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTA
* * * * *
14305003 ACCCTCTGTCCGGTCTGAT-TTAGACTGGGAATGAATTTCGTGTGCTTAGATTGGGAATGAACTC
578 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
14305067 CGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTAGGATGC
643 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGC
* * * * * * * * **
14305132 ACAAGCCAGGGATC-AGCCGGGTGCCCCTCCACATGCTGCCGATCTTGCTACCGCAACCCTCGGT
708 GCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACATGCTACCGATCCTACTACCGCAACCCTCACT
** * * * * * *
14305196 TTGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTATGCCAACCGATGAAACGAGCGGGT
772 CCGGTCT-GATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * *
14305260 GGCCGGGCAGGTGGGCACTGCGTCGACCAGAGAGATGGGATGCGCAAGCCATGGATCGATA
836 GGGCGGGCAGGCGGGCACTACCT-GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
14305321 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
14305386 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC---
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
* *
14305448 ---T----A--TTT----C----T-C---AC--GA-TTTTTAAAACTTTTTCGGAAGGAG-TTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * * * *
14305488 G-CCCAAACTTCGTAGATGTGATCCTCTTAATTTTCTTGGCACGCA-TAAAAAATTCAGCT-AAA
196 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
*
14305550 ACTTGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
14305614 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
14305679 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
390 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
* * * ** * * * *
14305744 CCCCGGGCCCCCCCGATCGCCAAAACTCCAATGCCGCCGGTCAAGTTCT-TCA---ATGATGGTG
455 CCCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCAGCGACGATGGTG
* * * *
14305805 CCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAACAAGTGTTGCCGTAACCCTCG
520 CCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCG
* * * * * *
14305870 GTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGAAATGCACTCCATATGC
585 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
14305935 CTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCC
650 CTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * * * *
14306000 GGGGATCGGTCGAGTCCCTCTCTGCATGCTGCTGATCCTACTGCCGTAACCCTCACTCCGGTCTG
715 GGGGATCGATCGGGTCCCCCTCTACATGCTACCGATCCTACTACCGCAACCCTCACTCCGGTCTG
* * * *
14306065 ATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGACTGACGAAACGAGCGGGCGGGGGGGCG
780 ATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * *
14306130 GGCGGGTACAACGTCGGCCAGAGAGAC
845 GGCGGGCACTACCT-GGCCAGAGAGAC
14306157 TCATTTTCTA
Statistics
Matches: 2298, Mismatches: 300, Indels: 103
0.85 0.11 0.04
Matches are distributed among these distances:
860 74 0.03
861 224 0.10
862 1 0.00
867 1 0.00
868 1 0.00
870 81 0.04
871 145 0.06
872 36 0.02
873 18 0.01
874 20 0.01
875 2 0.00
877 1 0.00
881 1 0.00
885 1 0.00
889 54 0.02
890 212 0.09
891 336 0.15
892 32 0.01
893 159 0.07
894 1 0.00
895 2 0.00
898 1 0.00
899 87 0.04
900 105 0.05
901 250 0.11
902 1 0.00
903 1 0.00
904 446 0.19
905 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
CCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCGCAGCGACGATGGTGC
CCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGG
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCG
GGGATCGATCGGGTCCCCCTCTACATGCTACCGATCCTACTACCGCAACCCTCACTCCGGTCTGA
TCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
GCGGGCACTACCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
Found at i:14305922 original size:26 final size:26
Alignment explanation
Indices: 14305882--14305934 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14305872 CTGGTCTGAT
* *
14305882 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCATATG
*
14305908 CTTAGACTAGAAATGCACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
14305934 C
1 C
14305935 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:14306661 original size:26 final size:26
Alignment explanation
Indices: 14306625--14306677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14306615 CTGGTCCGAT
14306625 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
14306651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
14306677 C
1 C
14306678 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14308437 original size:26 final size:26
Alignment explanation
Indices: 14308401--14308450 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14308391 CCAGTCCAAA
14308401 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
14308427 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14308451 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14309334 original size:26 final size:26
Alignment explanation
Indices: 14309296--14309348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14309286 TGGATCCGAT
*
14309296 CTTAGACTAGGAAAGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCTATATG
* *
14309322 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAAAGAACTCTATATG
14309348 C
1 C
14309349 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCTATATG
Found at i:14311962 original size:26 final size:26
Alignment explanation
Indices: 14311933--14311982 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14311923 CCGATCCAAT
*
14311933 CTTAGATTGGGAATGAACTCCATACG
1 CTTAGACTGGGAATGAACTCCATACG
14311959 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
14311983 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATACG
Found at i:14313735 original size:26 final size:26
Alignment explanation
Indices: 14313706--14313758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14313696 CTAGTCCGAT
14313706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14313732 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14313758 C
1 C
14313759 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14314616 original size:903 final size:892
Alignment explanation
Indices: 14311333--14315353 Score: 5357
Period size: 903 Copynumber: 4.5 Consensus size: 892
14311323 CTAGAGAGAC
** * *
14311333 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCACTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
* * * *
14311398 AAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCCAT
66 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* *
14311463 TTTTCACGATTTTTGAAACTTTTTGTGGTTCTGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTT
131 TTTTCACGATTTTTGAAACTTTTTG-CGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTT
* *
14311527 GGCCCCAAACTTGGTAGACGTGATCCTT-T-TTTTTTTTGGCATGCATAAAAAAATTCAGCTAAA
194 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
14311590 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATG
259 AACTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
14311655 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
14311720 ATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
* * * ** *
14311784 -CCCCCAGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCTCCGGTGATGCTTCGA
454 CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* * * *
14311848 CGATGGTACCCCGACGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGC
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGC
** * * * * * *
14311913 AGCCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACT
583 AAACCTCGGTCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATT
* * * * *
14311978 CCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCTGGATG
647 TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG-CAGCCAGAGGGGCGGGATG
* * * * * * * * *
14312043 CGCGA-CTCGGGTATCGG-CTGGGTCCCCCTCTGCATGCTGCCGATCTTGCTGCCACAACCCTCA
711 CGCAAGCT-GGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCAGATCCTACTACCGCAACCCTCG
* ** * * *
14312106 CTCCAGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGGAACGAGCGGA
774 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-
* * * * *
14312171 CGGGCGGGCGGGCA-C-TACG-C------C-GG-T----TA---G-AGA--GA-C
838 CGGGCGGGCAGGCACCACACGCCAGAAGACGGGATGCGCAAGCCGTGGATCGATA
* *
14312204 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTAATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
* * * *
14312269 AAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* * *
14312334 TTTTCACGAGTTTTGAAACTTTTTGCAGTTCGTGATTTTTTAAAATTTTTTCGGAAAGAAGTTTT
131 TTTTCACGATTTTTGAAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTT
* * * * * *
14312399 GGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCAAGCAC-AAAAAATTTAGCTAAA
194 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
14312463 AACTCGAAGTGTACAACATTTTGAGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
259 AACTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
14312528 GCTACTGGCAGCAAACCTGT-AGATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* **
14312592 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCCTTGCACATCATGTGCGCACAC
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
* * *
14312657 CCCCCCGGCCCCCCGATCGTCGGAACCCCAATTCCGTCGATCAGGTTCTCCGGCGATGCTCCGAC
454 CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGAC
* *** * *
14312722 GATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGTTGGAGCCCTGCATGTGCTACCGTA
519 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCA
* *
14312787 AGCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
584 AACCTCGGT-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA-TT
* * * * * *
14312852 T-GTATGCCTCAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACAAGAGGGGCAGGATA
647 TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAG-CCAGAGGGGCGGGATG
* * * * **
14312916 CGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGCAGATCCTACTATCGTAACCCTCACT
711 CGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGGT
* * * *
14312981 CTGGTCTGATCTAAGACTGGGAATGAACTCCGTAAGCCTAAGCCGATCGACGAAACGAGCTGGCG
776 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCG
* * *
14313046 GGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATA
840 GGCGGGCAGGCACCACA-C-GCCAGA-AGACGGGATGCGCAAGCCGTGGATCGATA
*
14313102 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
*
14313167 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* * *
14313232 TTTTCATGATTTTTGAAACTTTTTGCGAGTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCG-TTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * *
14313297 G-CTCCAAACATGGTAGACGTTATCCTTTTATTCTTTTTGGCATGCACAAAAAAATTTC-GCTAA
195 GTC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TTCAGCTAA
* * *
14313360 AAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACATTAAT
258 AAACTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14313425 GGCTACTGGCAGCAAACCAGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
323 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
14313490 GATGAGGGATAGAGGGCCAATATAGGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
388 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
* * *
14313555 CCCCCCCGGCCCTCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTG
453 CCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * **
14313620 ATGATGGTGCCCTGATGAAGAAAAAGGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCG
517 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCG
***
14313685 CAAACCTTAATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAT
582 CAAACCTCGGTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAT
* *
14313750 TTCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGTGCTCAGTCAGCCAGAGGGGTGGGAT
646 TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG-CAGCCAGAGGGGCGGGAT
* * * * * *
14313815 GTGCAAGTTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACTCTTGG
710 GCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGG
* * * *
14313880 TTTGGTCTGATATTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGC
775 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-AA-CGAGC
*
14313945 GGGCGGGCGGGCAGGCACCACACCGACCAGAAAGACGGGATGCGCAAGCCGTGGATCGATG
836 -GGCGGGCGGGCAGGCACCACA-CG-CCAG-AAGACGGGATGCGCAAGCCGTGGATCGATA
* ** ** *
14314006 GGGTGGTAGGTGGGTTTTGGCACATCTTTGTATTTCTCCATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
* *
14314071 AAATTCAGACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATTGCAAGATGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
*
14314136 TTTTCACGATTTTTAAAACTTTTGTG-GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
*
14314200 GTCCCAACCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
195 GTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
14314265 ACTCGAAGTGTACAAGATTTTGTGACGATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
260 ACTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
14314330 CTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
14314395 TAAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-C
* * *
14314460 CCCCCCGGCCCCCTCGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCACCGA
454 CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
* *
14314525 CGATGGTGCCCCGGCGAAGAGAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGC
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGC
* * ** * * * *
14314590 AACCCTCGGTGCAATTTGAT-TTAGACTAGGAATGAATTCCGTGTGCTTAAACTGGGAATGAA-T
583 AAACCTCGGT-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATT
* *
14314653 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
647 TC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG-CAGCCAGAGGGGCGGGAT
* * * * * *
14314718 GCACAAGCTGGGGATCGGTCGGGTGCCCCTCTACATGCTGCCGATCCTACTGCCGCAACCCTCGG
710 GCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGG
* ** * * *
14314783 TCCGGTCCAATCTTAGACTAGGTATGAACTCCATATGCCTAAGCCAACCGACGAAACGA------
775 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCG
*
14314842 -GC--GCA-G---C-CA-G--AG-AGACGGGATGCGCAAGCCATGGATCGATA
840 GGCGGGCAGGCACCACACGCCAGAAGACGGGATGCGCAAGCCGTGGATCGATA
* **
14314883 GGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATAATATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
*
14314948 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* *
14315013 TTTTCATGATTTTTGAAACTTTTTATG-GTTCGGGATTTTTTAAAATTTTTTCGAAACGAGTTTT
131 TTTTCACGATTTTTGAAAC-TTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* *
14315077 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACAAAA
194 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* *
14315142 AACTCGAAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTCCCTATTTCAGACACTTTAATG
259 AACTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
14315207 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
14315272 ATGAGAGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCACCGCACATCATGTGCGCACA-
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
*
14315336 CCCCCTGGCCCCCCGATC
454 CCCCCCGGCCCCCCGATC
14315354 ACTGGAACCC
Statistics
Matches: 2803, Mismatches: 286, Indels: 118
0.87 0.09 0.04
Matches are distributed among these distances:
871 169 0.06
872 140 0.05
873 422 0.15
874 32 0.01
875 6 0.00
876 13 0.00
877 164 0.06
878 290 0.10
879 2 0.00
882 1 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 3 0.00
891 3 0.00
894 1 0.00
895 2 0.00
896 1 0.00
897 54 0.02
898 261 0.09
899 120 0.04
900 306 0.11
901 3 0.00
902 7 0.00
903 466 0.17
904 325 0.12
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (892 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATACCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
TCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAACATTTTGTGACCATATGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAAA
CCTCGGTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTTCGT
ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAGCCAGAGGGGCGGGATGCGCAA
GCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGGTCTGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGG
CAGGCACCACACGCCAGAAGACGGGATGCGCAAGCCGTGGATCGATA
Found at i:14315749 original size:135 final size:135
Alignment explanation
Indices: 14315507--14315775 Score: 511
Period size: 135 Copynumber: 2.0 Consensus size: 135
14315497 ATGAGCGGGC
*
14315507 GGGCGGGCGAGCACTACGCCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGAGCACTACACCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
14315572 GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
14315637 ACAAT
131 ACAAT
* *
14315642 GGGCGGGTGGGCACTACACCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGAGCACTACACCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
14315707 GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
14315772 ACAA
131 ACAA
14315776 CGGTCCCTTA
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (135 bp):
GGGCGGGCGAGCACTACACCGGCCAGAAAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAAT
Found at i:14315973 original size:19 final size:19
Alignment explanation
Indices: 14315940--14315976 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14315930 TTGGTATGCA
*
14315940 CAAAAGTGTGACCATTTCC
1 CAAAAGTGTCACCATTTCC
*
14315959 CAAAAGTGTCCCCATTTC
1 CAAAAGTGTCACCATTTC
14315977 AGACACTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (19 bp):
CAAAAGTGTCACCATTTCC
Found at i:14316290 original size:26 final size:26
Alignment explanation
Indices: 14316261--14316313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14316251 CTAGTCCGAT
14316261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14316287 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14316313 C
1 C
14316314 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14317196 original size:26 final size:26
Alignment explanation
Indices: 14317160--14317213 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14317150 GGTCTGATCT
14317160 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
14317186 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14317212 TA
1 TA
14317214 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14318086 original size:26 final size:26
Alignment explanation
Indices: 14318050--14318103 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14318040 GGTCTGATCT
14318050 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
14318076 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14318102 TA
1 TA
14318104 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14319541 original size:906 final size:891
Alignment explanation
Indices: 14315946--14319866 Score: 5401
Period size: 890 Copynumber: 4.4 Consensus size: 891
14315936 TGCACAAAAG
*** * * *
14315946 TGTGACCATTTCCCAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGAAGCAATCCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
14316011 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGCGGCCAATA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* ** *
14316076 TAAGGGCCAAGTACCAGCACCCATCGCATATTGTGTGCGCACACCCCCCCCCCGGCCCCCCGATC
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCCCCGACCCCCCGATC
* * * * *
14316141 GTCAGAACCTCAATG-C-T--G-CCGG---T-CGG-G-TTCTCCGGCGATGGTGCCCCGACGAAG
192 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * **
14316195 AAAAATGCGACACCAGCATATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGATCTAGTCCG
257 AAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACC-CAACCCTTGGTCCGGTCCG
* * *
14316259 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAAC
321 ATCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * **
14316324 CCATGAAAAGAACGTGCGGGCGCTCAGCC-ATCCAGAGGGGCGTGATGC-GCAAGCCGAAGATCG
386 CCACGAAATGAGCGTGCGGACGCTCAGCCGA-CCAGAGGGGTGGGATGCACCAA-CCGGGGATCG
* * * * * * * *
14316387 ATCGGGTCCCCCTCTACTTGCTGCTGATCCTACTACCATAACCCTCGGTCCAGTCTGATCTTAGA
449 ATCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTTGATCCAGTCCGATCTTAGA
* * *
14316452 CTGGGAAAGAACTCCGTATGCCTAAGCCAACCGATGAAACGTGCGTGCGGGCGGCTGGGTACTAC
514 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG-GCGAG-GGC-----ACTAC
* *
14316517 GTCGACC--AGAGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
572 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** *
14316580 ATTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTTGTACAACGGTCCCTTAAGC
637 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
14316645 CTTCACGTGAAGTTTCTAT-GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTCT
702 CTTCACGTGAAGTTTC-ATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTT
* * *
14316709 GCGGTTCAGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCCAAACTTGGTAGACGTGAT
766 GTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGAT
*
14316774 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
830 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
14316836 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
14316901 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
14316966 TAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGTACACCCCCCGACCCCCCGATCGTCG
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCG
**
14317031 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGACGATGGTGCCCCGGTGAAGAAA
196 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAA
* *
14317096 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ACCCAACCCTTGGTCCGGTCTGATCT
260 AATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACCCAACCCTTGGTCCGGTCCGATCT
*
14317160 TAGACTGGGAATGAACTCCATATGCCTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
325 TAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
*
14317225 GAAATGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGTGGGATGCACCAACCGGGGATCGATCGGG
390 GAAATGAGCGTGCGGACGCTCAGCCGACCAGAGGGGTGGGATGCACCAACCGGGGATCGATCGGG
* * *
14317290 TCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTTGATCCAGTTCGATCTTAGACTGGGA
455 TCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTTGATCCAGTCCGATCTTAGACTGGGA
* * ** * *
14317355 ATGAACTCCGTATGCCTAAGCCAATCGATGGAACGAGCGGTTAGGGCACTATGCCGGCCAGAGAG
520 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGAGGGCACTACGCCGACCAGAGAG
* * * * *
14317420 ACGGGATGCGCAAGCCATTGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTG
585 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * * *
14317485 CTTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTGAAGCCTTCCCGTGAAGT
650 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* ** *
14317550 TTCACGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTTGTTCAGGATTT
715 TTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAGGATTT
* * * * * *
14317615 TTTAAAATTTTTTCAGAACGAGTTTTGGCCCCAAACTTGGTAGCCATAATCCTCGTATTTTTTTT
780 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTT
* * *
14317680 TGGCATGCATAAAAAAATTCAACTAAAAACTCGAATTGTACAAGATTT
844 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
** *
14317728 TGTGGGCATTTGAAAAAAGTGTCCCCATTT-AGACTCTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
14317792 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
14317857 TAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGTACACCCCCCGACCCCCCGATCGTCG
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCG
**
14317922 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAA
196 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * *
14317987 ACGCGACACTAGCACATGCCCGAGCCCAGCATGTGCT-ACCCAACCCTTGGTCCGGTCTGATCTT
261 ATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACCCAACCCTTGGTCCGGTCCGATCTT
*
14318051 AGACTGGGAATGAACTCCATATGCCTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
326 AGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* *
14318116 AATTGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGTGGGATGCACCAACCGGGGATCGATCGGGT
391 AAATGAGCGTGCGGACGCTCAGCCGACCAGAGGGGTGGGATGCACCAACCGGGGATCGATCGGGT
* * *
14318181 CCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTTGATCCAGTTCGATCTTAGACTGGGAA
456 CCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTTGATCCAGTCCGATCTTAGACTGGGAA
* ** * *
14318246 TGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGTTAGGGCACTACGTCGGCCAGAGAGA
521 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGAGGGCACTACGCCGACCAGAGAGA
* * *
14318311 CGGGATGCGCAAGCCGTTGATTGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTAC
586 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
14318376 GTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
651 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * **
14318441 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTT-TGGTTTGGGATTTT
716 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAGGATTTT
*
14318505 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
781 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
14318570 GCATGCACAAAGAAATTCAGCTAAAAACTCGAAGTGTATAAGATTT
846 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
14318616 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
14318681 AAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAAGGATAGGGGTCCAATA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
14318746 TAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACATCCGCCCCCGGCCGCCCCGATC
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--C-CCCCCGACC-CCCCGATC
* * * * *
14318811 GTCGGAACACCAATGCCGTCGGTCAGGTTCTCTGGCAATGCTCCGATGATGGTCCCCCGACGAAG
192 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
14318876 AAAAAGGCGGCACCAGCAAATGCCCGAG-CCAGCATGTGCTGTCACAACCCTTGATCTGGTCCGA
257 AAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACCCAACCCTTGGTCCGGTCCGA
* ** ** * *
14318940 TCTTATACTGGGAATGAACTCTGTACACTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACC
322 TCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
14319005 CACCAAATGAGCTTACGGGCGCTCAGCCGACCAGAGGGGTGAGATGC-GCAAGCTGGGGATCGGA
387 CACGAAATGAGCGTGCGGACGCTCAGCCGACCAGAGGGGTGGGATGCACCAA-CCGGGGATC-GA
* * *** *** *
14319069 -CGGGTCCCCGTTTTTTGTGCTGCCGATCCTACTGTTGCAACCCTCTG-TCCGGTCCGATCTTAG
450 TCGGGTCCCC-CTCTGCATGCTGCCGATCCTACTGCCACAACCCT-TGATCCAGTCCGATCTTAG
* * *
14319132 ACTGGGAATGAACTGCGTATGCCTAAGCCAACCAACGAAACAAGCAGGCGGGAGGGGCGAGCGGG
513 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC--G-A-GC------GGCGA--GGG
14319197 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
566 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
14319262 GCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
631 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
14319327 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAAC
696 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAAC
*
14319392 TTTTTGAGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
761 TTTTTGTGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
14319456 GTGATCCTTGTATTTTTTTTGGCATGTACAAAACAATTCAGCTAAAAAGTCGAAGTGTACAAGAT
825 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
14319521 TT
890 TT
* *
14319523 TGTGACCATTTG-AAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
14319587 AAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
14319652 TAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-----C--CCCCCCGATCGTCG
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCG
*
14319710 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
196 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
*** * * * *
14319775 ATATAGCACCAGCAAATGCCCGAGCCTAGCATGTGCTG-CCGTAACCCTCGGTCCAGTCCGATCT
261 ATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACC-CAACCCTTGGTCCGGTCCGATCT
* * *
14319839 TAGACTGGGAATCAACTGCATATACCTA
325 TAGACTGGGAATGAACTCCATATGCCTA
14319867 ACCCAACCAA
Statistics
Matches: 2731, Mismatches: 255, Indels: 84
0.89 0.08 0.03
Matches are distributed among these distances:
886 30 0.01
887 1 0.00
888 79 0.03
889 194 0.07
890 677 0.25
891 232 0.08
892 302 0.11
893 222 0.08
894 78 0.03
895 100 0.04
896 57 0.02
897 224 0.08
898 65 0.02
904 3 0.00
906 340 0.12
907 127 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGACCCAACCCTTGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAATGAGCGTGCGGACGCTCAGCCGACCAGAGGGGTGGGATGCACCAACCGGGGATCGATCGGGT
CCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTTGATCCAGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGAGGGCACTACGCCGACCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCAGGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
Found at i:14321469 original size:26 final size:26
Alignment explanation
Indices: 14321433--14321485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14321423 CCTGTTCGAT
*
14321433 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14321459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14321485 C
1 C
14321486 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14322372 original size:26 final size:26
Alignment explanation
Indices: 14322334--14322386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14322324 CCCATCCGAT
* *
14322334 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14322360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14322386 C
1 C
14322387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14322611 original size:903 final size:902
Alignment explanation
Indices: 14320555--14329119 Score: 10324
Period size: 924 Copynumber: 9.5 Consensus size: 902
14320545 TCAGTCTGAT
* * * *
14320555 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** ** * * *
14320620 TGGCTGGAGGGGCGGG-TGCGCAAGCAAGGGATCGATCGTGTCCCCCTTTGCGTGCTGCT-GATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* * * * * * **
14320683 CTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAACGAACTTTGTATGCCTAAGCCA
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14320748 ACCGATGAAACGAGTGGGCGGGCGGGTGGGCGAGCACTACGCCGGCCAGAGATACGGGATGTGAA
196 ACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14320813 AGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
14320878 ATTTTTATGGCTTGTAAATTCATACAATAGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * * *
14320943 CGACCCTTTTTCTATTTTTCACGATTTTTGAAACTTTCTACGGTTCGAGATTTTTAAAAATTTTT
391 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAA-TTTT
* * * * * * *
14321008 TTAGTAA-GTGTTTGGGCCTCGAACTTGGTAGACGTGAACCTTGTATTTTTGTTGGCATGCACAA
455 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
14321072 AAAACTTCAGCTACAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATT
* *
14321137 TCAGACACTTTAATAGCTACTGGCAGC-AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
14321201 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14321266 ATCATGTACGCATAACCCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTT
714 ATCATGTGCGC---ACACCCCCCGGCCCCCCCGATCGCCAGAACCC-AATGCCGTCGGTCAGGTT
* * ** *
14321331 CTCCGGCGATGCTCCAACGATGGTCCCCCGATGAAGAAAAATATGGCACCAACACATGCCCGAGC
775 CTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
14321396 CTAGCATGTGCTGCTGGAACCCTCGGTCCTGTTCGATCTTAGATTGGGAATGAACTCCGTATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14321459 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAAAGAAACGAGCATGC-GGTGCTCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
14321523 CGGCTAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC--CATCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC-TCGAT
* * ** * * **
14321586 CCTACTGCTTTAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCC
130 CCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
14321651 AACCGGTAAAACGAGCGGGCGGGCGGGCGCGCAGGCACTATGCC-GCCAGATAGACGGGATGCGC
195 AACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** * * **
14321715 CAGCCGTGGATCGATAGGGTGGTAGGTGATTTTAGGCACATCTTAATTTTTCTGTGTGCCAATGC
260 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * *
14321780 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGGAGTTTCAAGGCAAG
325 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14321845 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* * * *
14321910 TTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAA
455 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14321975 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATT
*
14322040 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
14322105 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14322170 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCAAAAGCCCAATGCCGTCGTTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAA-CCCAATGCCGTCGGTCAGGTTCTC
* * * ** * * * *
14322235 CAGCGATGCTCCGACAATGGTGCCCTGGCGAAGAAAAATGTGGCACAAACACATGCTCGAGCCCA
778 CGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** * * *
14322300 GCATGTGCTGCCGCAACCCTCGGTCCCATCCGATCTTAGATTAGGAATGAACTCTGTATG
843 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14322360 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
14322425 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGGCGAGTCCCCCTCTGCATGTTGCT-GATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
** * * **
14322489 CTGCTACTATAACCCTCAGTTCGGTCCAATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCCA
* * *
14322554 ATCGATGAAACGAGCGGGCTGGCGGGAGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCA
196 ACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
14322619 AGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
14322684 ATTTTTGTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGG
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
14322749 TGACTTGTTTTCTATTTTTCA-CAATTTCTGAAACGTTTTT-CAGTTTGGGATTTTTTAAAAAAA
391 CGACTCGTTTTCTATTTTTCATGATTTTC-GAAAC-TTTTTACGGTTTGGGATTTTTT--AAAAT
* * * *
14322812 ATTTT--GATGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
452 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
14322875 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCC
517 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CC
* *
14322940 A-TTCAG-CACTTTATATGGCTACCGGTAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGG
581 ATTTCAGACACTTTA-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14323002 TGTGAGTTCTCAAGGTTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCAC
645 TGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * * *
14323066 CTTACATCATGTGCGCACA-CCCCC-GCGACCCGCGAT-GCCA-AAACCAATGCCGTCGGTCAGG
709 CGCACATCATGTGCGCACACCCCCCGGC-CCCCCCGATCGCCAGAACCCAATGCCGTCGGTCAGG
* * * * * *
14323127 TTCTTTCGGTGATGC-CTGGCGATGGTGCCCCCGGTGAAGAAAAATGCAGCACCAAGCACATGCC
773 TTC-TCCGGCGATGCTCCGACGATGGTG-CCCCGATGAAGAAAAATGCGGCACC-AGCACATGCC
* * * * * * ** *
14323191 CAAGCCCAGAATGTGCTACTGCTA-CCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGT
835 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
14323255 ATG
900 ATG
* * * * * *
14323258 CTTAGACTGGGAATGAACTTCGTATGCCCAAGTCAACCCACAAAATGAGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
14323323 CGGCCAGAAGGGTAGGATGGGCAAGTCAGGGATCAACCGGGTCCCCCTTTTCTGTGCTG-TCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC-GTGCTGCTCGAT
* * * * *
14323387 CCTGCTACCGAAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTTTGCAC-AGAG
130 CCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGC-CTA-AG
** *** * * * *** *
14323451 -C-ATGGATCGGCCCG-GTCCGCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCCAC
193 CCAACCGAT-GAAACGAG--CG----GGCGGGC-G-GGA--GGGC-G-GGC-A--C----T--AC
* * * *
14323513 GCCAGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACAT
236 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
14323578 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGGTTGCAAATTCATATAATGGTCCCTTAAGC
301 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
14323643 CTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
366 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * *** *
14323708 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCGTGAACTTGGAAGACGTGATCC
431 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
14323773 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
496 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
14323838 CCATTTGAAAAAAGTGTCGCCATTTTAGACACTTTAATGGCTACCGGTAGCAAACCTGTAAAATC
561 CCATTTGAAAAAAGTGTC-CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
14323903 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
625 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * *
14323968 GCCAAGTACCAGCACCCACCTTACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCAAAAC
690 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAA-
* * * * * *
14324033 CCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGC
754 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGC
* * * * * * ** * *
14324098 AGCACCAGCACATGCCCAAGCCCAGAATGTGCTACTGCTACCCTTAGTCTGGTCTGATCTTAGAC
819 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
14324163 TGGGAATGAACTCCGTATG
884 TGGGAATGAACTCCGTATG
* * ** * *
14324182 CTTAGACTGGGAATGAACTTCGTATGCCCAAGTCAACATACGAAATGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
14324247 CGGCCAGAAGGGTAGGATGGGCAAGTCAGGGATCAACCGGGTCCCCCTTTTCTGTGCTG-TCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGC-GTGCTGCTCGAT
* * * * *
14324311 CCTGCTACCGAAACCCTCAGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTTTG-C-ACAGA
130 CCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTA-AG-
** *** * * * *** *
14324374 CC-ATGGATCGGCCCG-GTCCGCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCCAC
193 CCAACCGAT-GAAACGAG--CG----GGCGGGC-G-GGA--GGGC-G-GGC-A--C----T--AC
* * * *
14324437 GCCAGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGATGGTAGGTGGGTTTAGGCACAT
236 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
14324502 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGGTTGCAAATTCATATAATGGTCCCTTAAGC
301 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
14324567 CTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
366 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * *** *
14324632 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCGTGAACTTGGAAGACGTGATCC
431 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
14324697 TTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
496 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
14324762 CCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTAGCAGCAAACCTGTAAAATC
561 CCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
14324827 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
625 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
14324892 ACCAAGTACCAGCACCCATCGCACATCATGTGTGCAAACCCGCCCCGGCCCCCTCGATCGCCAGA
690 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGCCAGA
* * *
14324957 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAAT
753 A-CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
* * ** * * *
14325022 GCGACACCAGCACATGCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCTGATCTTAA
817 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
**
14325087 ACTGGTCATGAACTCCGTATG
882 ACTGGGAATGAACTCCGTATG
* * * *
14325108 CTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
14325173 TGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATTGACTGGGTCCCACTCAGTGTGCT-ATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* * *
14325237 CTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCC
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGCC
* * * ** *
14325301 AATCGAAGAAACGAGCGGGCGGGC----GGGCGGTCACTACGCCGATCAGAGAGACGGGATGCGT
195 AACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
14325362 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
260 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
14325427 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
325 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
14325492 ACGACTCGTTTTC------T-AT--TTTT-----C-----AC-------GA-TTTTTAAAATTTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
* **
14325530 TTCAGAAGGAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
455 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
14325595 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCACCATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCATT
* *
14325660 TCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
14325725 AGTTCTCAAGGTTTAATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14325790 ATCATGTGCGCAGACCCCCCTCGGCCCCCCCGATTGTCGGAAGCCCAATGCCGCCGGTCAGGTTC
714 ATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCAGAA-CCCAATGCCGTCGGTCAGGTTC
* * *
14325855 TCCGACGATGCTCCGGA-GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
776 TCCGGCGATGCTCC-GACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * * *
14325919 CCAGTATTTGTTGCCGCAACCCTTGGTCCGATCTGATCTTTGACTGGGAATGAACTCCATATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
14325982 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14326047 CAGCCAGAGGGGCGGGATGCGCAGGCCGGGGATCGACCGGGTCCCCTTCTGAGTGCTGC-CAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* ** *** *
14326111 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGGTTAGGAATGAACTACGTATGCCTAAGCCA
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
14326176 ACCGACAAAACGAGCAGGCGGGCGAGTGGGCAGGCGGGCACTACGTCAGCCAGAGAGACGGGATA
196 ACCGATGAAACGAGCGGGCGGGCG-G-GAG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * ** *
14326241 CGCAAGTCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTTCCAA
257 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
*
14326306 TGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
322 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
14326371 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTACGGTTTGGGAATTTTTAAAAT
387 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAAT
* ** * *
14326436 TTTTTCGGAAAGACATTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
452 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
14326501 CATAAAGATTCGGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
517 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCC
* * *
14326566 ATTTTAGACACTTTAATGGCTACTGGGAGTAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
14326630 GTGAGTTCTCGAGGTTTGATGACGGATAGAGGGCCAATATAAGGGCCATGTACCAGCACCCATCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14326695 CACATCATGTGCGCACACCCCCCGG-CCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
711 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAA-CCCAATGCCGTCGGTCAGGTT
* * *
14326759 CTCCGGCGATGCTCCGATGATAGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGC
775 CTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
14326824 CCAGCATGTGCTGTCGTAACCCTTGGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * *
14326887 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCACGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **
14326952 AGGCCAGAGGGGCAGGATGATCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC-CGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* * *
14327016 CTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGATTG-GGAATGAACTCCGTATGCCTAAGCC
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGA-CGAGGAATGAACTCCGTATGCCTAAGCC
* ** * * * *
14327080 AACCGACGAAACGAGCAAGCGGGCGGGCGGGCTGGTGGGCACTACGCCGGCCGGATAGATGGGAT
195 AACCGATGAAAC--G--AGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
14327145 GCGCAAGTCGTGGATCGATAGGGTGGT-GTGTGGGTTTAGGCAAATCTTCATATTTCTGCGTGCC
256 GCGCAAGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
14327209 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
320 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
14327274 GCAAGACGACTCATTTTCTATTTTTTATGATTTCCAAAACTTTTTACGGTTTAGGCATTTTTTAA
385 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTT-GGGATTTTTTAA
* * * * *
14327339 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCATT-TATTTTTGTTGGCC
449 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCA
* * *
14327403 TCCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGT
513 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
14327468 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGGTCTTTAAGT
578 -CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
14327533 GGGTGTGAGTTATCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCC
642 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
14327598 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCTAGTGCCGCCGGTTA
707 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCC-AATGCCGTCGGTCA
* * * ** * **
14327663 GGTTCTCCGACGATGCTCGGGCGATGGTGCCCCGACAAAGAAAAATTCACCACCAGCACATGCCC
771 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCC
* *
14327728 GAGCCCAGCATGTGCTGCCGCAACCCCCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
836 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
14327793 TG
901 TG
* * * * * *
14327795 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGTGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
14327860 CGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCCGGTCCATCTCTACGTGCTG-TCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* * * * * *
14327924 CTACTACCGTAACCCTCAGTCTGGTCTGATCTAAGACTG-GGAATGAACTCTGTCTGCCTAAGCC
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGCC
*
14327988 AACCGACGAAACGAGCGGGCGTACGG-GCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
195 AACCGATGAAACGAGCGGGCG---GGCG-GGA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
14328052 TGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTACGTGCC
255 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* *
14328117 AATGCCATTTTTATAGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
320 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * **
14328182 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTATGATTTTTTAAA
385 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAA
* * * **
14328247 ATTTTTTCAGAAGAAGTGTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTGT
450 ATTTTTTCGGAAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
14328311 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTC
514 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-
* ** * *
14328375 CCCATTTCAGACACTTTAATGGCTCCTAACAGCAAACCTGTAAAATCTCAAACGCTCTTTAAAGG
578 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
14328440 GGTATAAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
643 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
14328505 TCGCACATCATGTGCGCACACCCCCTGGCCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
708 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAA-CCCAATGCCGTCGGTCAG
* * * *
14328570 GTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCTCG
772 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
14328635 AGCCTAGCATGTGCTGCCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
837 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
14328700 G
902 G
* * * * * * * *
14328701 CTTAGACTAGGAAAGAACTCTGTATGCCTCAGTCAACCCACGAAATGAGTGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * *
14328766 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTAC-CGATT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
* * * *
14328830 CTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTG-GGAATGAACTTCGTATGCCTAAGCC
131 CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGAC-GAGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14328894 AACTGACG-AA--AG-GAGCGGAC----GGGCGGGCACCACGTCGGCCAGAGAGACGGGATGCGC
195 AACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
14328951 AAGCCGTAGATCGATGGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
260 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* ** *
14329016 CATTTTTATGGCCTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAC
325 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14329081 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
14329120 AGACTGGGAA
Statistics
Matches: 6766, Mismatches: 756, Indels: 288
0.87 0.10 0.04
Matches are distributed among these distances:
873 4 0.00
874 604 0.09
875 4 0.00
880 1 0.00
882 168 0.02
887 1 0.00
888 1 0.00
889 1 0.00
891 4 0.00
892 4 0.00
894 192 0.03
895 1 0.00
897 29 0.00
898 169 0.02
899 96 0.01
900 17 0.00
901 437 0.06
902 226 0.03
903 630 0.09
904 312 0.05
905 530 0.08
906 651 0.10
907 219 0.03
908 600 0.09
909 193 0.03
910 4 0.00
911 2 0.00
912 1 0.00
913 1 0.00
917 9 0.00
918 5 0.00
919 296 0.04
920 66 0.01
921 84 0.01
922 16 0.00
923 39 0.01
924 799 0.12
925 100 0.01
926 249 0.04
927 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTCGATC
CTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACGAGGAATGAACTCCGTATGCCTAAGCCA
ACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCAATGCCGTCGGTCAGGTTCTCCGG
CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14323261 original size:26 final size:26
Alignment explanation
Indices: 14323232--14323284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14323222 CTAGTCTGAT
14323232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14323258 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14323284 C
1 C
14323285 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14324192 original size:26 final size:26
Alignment explanation
Indices: 14324156--14324208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14324146 CTGGTCTGAT
14324156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14324182 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14324208 C
1 C
14324209 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14326890 original size:26 final size:26
Alignment explanation
Indices: 14326861--14326913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14326851 CCGGTCCAAT
14326861 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14326887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14326913 C
1 C
14326914 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14327798 original size:26 final size:26
Alignment explanation
Indices: 14327769--14327821 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14327759 CCGGTTCGAT
14327769 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14327795 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14327821 C
1 C
14327822 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14328704 original size:26 final size:26
Alignment explanation
Indices: 14328675--14328727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14328665 CCGGTCCGAT
* *
14328675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
14328701 CTTAGACTAGGAAAGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
14328727 C
1 C
14328728 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:14328778 original size:906 final size:906
Alignment explanation
Indices: 14325517--14329119 Score: 4986
Period size: 906 Copynumber: 4.0 Consensus size: 906
14325507 TTTTTCACGA
* **
14325517 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
14325582 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAC
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
14325647 AAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAACATCTCAAATGCTCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
14325712 TTAAGGGGGTGTGAGTTCTCAAGGTTTAATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCA
196 TTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCA
* * * *
14325777 GTACCCATCGCACATCATGTGCGCAGACCCCCCTCGGCCCCCCCGATTGTCGGAAGCCCAATGCC
260 GCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCC
*
14325842 GCCGGTCAGGTTCTCCGACGATGCTCCGGAGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
323 GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGC
* * * * * *
14325907 ACATGCCCGAGCCCAGTATTTGTTGCCGCAACCCTTGGTCCGATCTGATCTTTGACTGGGAATGA
388 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
* *
14325972 ACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
14326037 GGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAGGCCGGGGATCGACCGGGTCCCCTTCTGA-GT
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCT-ACGT
* * * ** ** *
14326101 GCTGCCAATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGGTTAGGAATGAACTAC-GTA
582 GCTGCCGATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-CTGTA
* * * * * * * *
14326165 TGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGAGTGGGCAGGCGGGCACTACGTCAGCCAGA
646 TGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGACGGGCGGGCACTACGCCGGCCAGA
* * *
14326230 GAGACGGGATACGCAAGTCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCAAATCTTCATATTT
711 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTT
** * *
14326295 CTGTGTTCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
776 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
14326360 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTACGGTTTGGGA
841 AGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTAGGA
*
14326425 A
906 T
* *
14326426 TTTTTAAAATTTTTTCGGAAAGACA--TTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTT
1 TTTTTAAAATTTTTTCAG-AAGA-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * * *
14326489 TTTTGGCATGCACATAAAGATTCGGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAA
64 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
14326554 AAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGGAGTAAACCTGTAAAATCTCAAATGCT
129 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
14326619 CTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGAGGGCCAATATAAGGGCCATGTACC
194 CTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
*
14326684 AGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCTCGATCGTCGGAACCCCAATGCCG
259 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * ** * * * *
14326748 TCGGTCAGGTTCTCCGGCGATGCTCCGATGATAGTGCCCCGATGAAGAAAAATGCGACACCAGCA
324 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
* * * *
14326813 CATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCGGTCCAATCTTAAACTGGGAATGAA
389 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAA
**
14326878 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAC
454 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * ** *
14326943 GCGTTCAACAGGCCAGAGGGGCAGGATGATCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGC
519 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGC
* * *
14327008 TGCCGATCCTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
584 TGCCGATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
* * * * * * *
14327073 CTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCGGGCTGGTGGGCACTACGCCGGCCGGATAG
649 CTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAG
* *
14327138 ATGGGATGCGCAAGTCGTGGATCGATAGGGTGGT-GTGTGGGTTTAGGCAAATCTTCATATTTCT
714 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCAAATCTTCATATTTCT
*
14327202 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
778 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
14327267 TTTCATGGCAAGACGACTCATTTTCTATTTTTTATGATTTCCAAAACTTTTTACGGTTTAGGCAT
843 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTAGG-AT
** * * * *
14327332 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCATT-TATTTTT
1 TTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTT
* * * *
14327396 GTTGGCCTCCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
14327461 AAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGGTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
14327526 TTTAAGTGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
195 TTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
* * * * *
14327591 AGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCTAGTGCCG
259 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * * **
14327656 CCGGTTAGGTTCTCCGACGATGCTCGGGCGATGGTGCCCCGACAAAGAAAAAT-TCACCACCAGC
324 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGT-GGCACCAGC
** *
14327720 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCCCGGTCCGGTTCGATCTTAGACTGGGAATGA
388 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * *
14327785 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACAAGCGTGTG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * **
14327850 GGCACTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCCGGTCCATCTCTACGTG
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTG
* * * * *
14327915 CTGTCGATCCTACTACCGTAACCCTCAGTCTGGTCTGATCTAAGACTGGGAATGAACTCTGTCTG
583 CTGCCGATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* *
14327980 CCTAAGCCAACCGACGAAACGAGCGGGCGTACGGGCGGACGGGCGGGCACTACGCCGGCCAGAGA
648 CCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGACGGGCGGGCACTACGCCGGCCAGAGA
* * *
14328045 GACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCT
713 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCT
* *
14328110 ACGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAG
778 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** * *
14328175 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTATGAT
843 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTAGGAT
14328239 TTTTTAAAATTTTTTCAGAAGAAGTGTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
1 TTTTTAAAATTTTTTCAGAAGAAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* **
14328303 TTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AA
65 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
* ** *
14328367 AAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTAACAGCAAACCTGTAAAATCTCAAACGCTC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
14328432 TTTAAAGGGGTATAAGTTGTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
195 TTT-AAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
* *
14328497 AGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCTCCGATCGTCGGAACCCCAATGCCG
259 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCG
* * *
14328562 CCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCA
324 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
* *
14328627 CATGCTCGAGCCTAGCATGTGCTGCCGCAA-CCTTCGGTCCGGTCCGATCTTAGACTGGGAATGA
389 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTT-GGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * * * *
14328691 ACTCCGTATGCTTAGACTAGGAAAGAACTCTGTATGCCTCAGTCAACCCACGAAATGAGTGTACG
453 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* *** *
14328756 GGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTG
518 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTG
* * * * * *
14328821 CTACCGATTCTGCTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT-TCGTAT
583 CTGCCGATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTAT
* * *
14328885 GCCTAAGCCAACTGACG--A--A--A---GGA---GCGGACGGGCGGGCACCACGTCGGCCAGAG
647 GCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGACGGGCGGGCACTACGCCGGCCAGAG
* * * *
14328938 AGACGGGATGCGCAAGCCGTAGATCGATGGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTC
712 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTC
* * **
14329003 TACATGCCAATGCCATTTTTATGGCCTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAA
777 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* **
14329068 GTTTCATGGCAACACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
842 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
14329120 AGACTGGGAA
Statistics
Matches: 2395, Mismatches: 280, Indels: 53
0.88 0.10 0.02
Matches are distributed among these distances:
894 197 0.08
897 2 0.00
902 1 0.00
904 4 0.00
905 545 0.23
906 639 0.27
907 210 0.09
908 616 0.26
909 177 0.07
910 3 0.00
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (906 bp):
TTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG
CCGATCCTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
AAGCCAACCGACGAAACGAGCAGGCGGACGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTAGGAT
Found at i:14329167 original size:26 final size:26
Alignment explanation
Indices: 14329118--14329169 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14329108 TTTGAAACTT
**
14329118 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
14329144 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
14329170 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:14329452 original size:167 final size:167
Alignment explanation
Indices: 14329145--14329527 Score: 460
Period size: 167 Copynumber: 2.3 Consensus size: 167
14329135 TTTGTATGCT
* * *
14329145 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AA--A-CGA----GCGTGAGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGAGGGCG
* * * * * ** *
14329202 CTCAACCGGTCAGAGGGGCGGGATGCGCAAGCCGGGGATAGGTCGGGTCCCTTTCTGTGTGCTGC
66 CTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATACGACAGGTCCCCCTCTATGTGCTGC
* * *
14329267 CGATCCTGCTGCCGCAACCCTCTGTCCGATCCAATCG
131 CGATCCTGCTACCGCAACCCTCAGTCCGACCCAATCG
* *
14329304 TAGACTGGGAATGAACTCCGTATGACTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGTGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGAGGGCG
* * *
14329369 TTCAACCGGCCAGAAGGGTGGGATGCGCAAGCCTGGGAT-CGACAAGGTCCCCCTCTATGTGCTG
66 CTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATACGAC-AGGTCCCCCTCTATGTGCTG
* * * * *
14329433 CCGTTCCTGCTATCGCAACCCTCAGTCTGGCCCAATCT
130 CCGATCCTGCTACCGCAACCCTCAGTCCGACCCAATCG
* *
14329471 TAGACTGGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGAGCGGGCGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCG
14329528 GGCACTATGC
Statistics
Matches: 188, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
159 36 0.19
160 2 0.01
162 1 0.01
163 3 0.02
166 2 0.01
167 144 0.77
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (167 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGTGAGGGCG
CTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATACGACAGGTCCCCCTCTATGTGCTGC
CGATCCTGCTACCGCAACCCTCAGTCCGACCCAATCG
Found at i:14331081 original size:26 final size:26
Alignment explanation
Indices: 14331052--14331104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14331042 CTGGTCCGAT
*
14331052 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14331078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14331104 C
1 C
14331105 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Done.