Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 92 of 190
Found at i:14612426 original size:26 final size:26
Alignment explanation
Indices: 14612397--14612449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14612387 CCAGTCTGAT
*
14612397 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14612423 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14612449 C
1 C
14612450 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14612498 original size:184 final size:185
Alignment explanation
Indices: 14612189--14612632 Score: 595
Period size: 184 Copynumber: 2.4 Consensus size: 185
14612179 GCATGTGCTA
* * * * *
14612189 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGAGAATG
1 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
* ** *
14612254 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-
66 AACTCCGTATGCCTAAGTCAAACCATGAAACAAGCAAGCGAGCGCTCAGCCGGCCAGAGGGGCGA
* * * * *
14612318 GAATGCGCAAGCTGAGGATCGATCGGATCCC-CACTGCTTGTTGCCGATCCTTCTG
131 G-ATGCGCAAGCCGAGGATCGATCGGATCCCTCACTGCGTGCTGCCGATCCTACAG
* * *
14612373 CCGCAACCCTCAATCCAGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
1 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
* *
14612438 AACTCCGTATGCCTAAGTCAAACCATGAAACGAGCAAGCGAGCGCTCAGTCGGCCAGAGGGGCGA
66 AACTCCGTATGCCTAAGTCAAACCATGAAACAAGCAAGCGAGCGCTCAGCCGGCCAGAGGGGCGA
* * * *
14612503 GATGCGCAAGCCGGGGATCGATTGGGTCCCTCTCTGCGTGCTGCCGATCCTACAG
131 GATGCGCAAGCCGAGGATCGATCGGATCCCTCACTGCGTGCTGCCGATCCTACAG
* * ** * * *
14612558 TCGTAACCCTCAGTTTAGACCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATG
1 CCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
14612623 AACTCCGTAT
66 AACTCCGTAT
14612633 TCTTAGACTG
Statistics
Matches: 225, Mismatches: 33, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
184 140 0.62
185 85 0.38
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
CCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAAACCATGAAACAAGCAAGCGAGCGCTCAGCCGGCCAGAGGGGCGA
GATGCGCAAGCCGAGGATCGATCGGATCCCTCACTGCGTGCTGCCGATCCTACAG
Found at i:14612618 original size:26 final size:26
Alignment explanation
Indices: 14612582--14612660 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14612572 TTAGACCAAT
*
14612582 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14612608 CTTAGATTGGGAATGAACTCCGTATT
1 CTTAGACTGGGAATGAACTCCGTATG
14612634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14612660 C
1 C
14612661 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14612797 original size:211 final size:211
Alignment explanation
Indices: 14612404--14612819 Score: 548
Period size: 211 Copynumber: 2.0 Consensus size: 211
14612394 GATCTTAAAC
* *
14612404 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAAC
1 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAAC
* * * *
14612469 GAGCAAGCGAGCGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATTGGGTCCCT
66 GAGCAAGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGATCGGGTCCCC
*** **
14612534 CTCTGCGTGCTGCCGATCCTACAGTCGTAACCCTCAGTTTAGACCAATCTTAGACTGGGAATGAA
131 CTCTGCGTGCTGCCGATCCTACAGTAACAACCCTCAGTCCAGACCAATCTTAGACTGGGAATGAA
14612599 CTCTGTATGCTTAGAT
196 CTCTGTATGCTTAGAT
* *
14612615 TGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAC
1 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAAC
* * * * * *
14612680 GAGCGTA-CGGGCGTTTAGCCGGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGGTCGGGTCCC
66 GAGC-AAGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * * * **
14612744 CCTCTTCGTGCTGCCGATCTTGCTGTAACCACCCTC-GATCCGGTCTGATCTTAGACTGGGAATG
130 CCTCTGCGTGCTGCCGATCCTACAGTAACAACCCTCAG-TCCAGACCAATCTTAGACTGGGAATG
14612808 AACTCTGTATGC
194 AACTCTGTATGC
14612820 CTAAGCCAAT
Statistics
Matches: 175, Mismatches: 28, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
210 1 0.01
211 173 0.99
212 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (211 bp):
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATAAAAC
GAGCAAGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGATCGGGTCCCC
CTCTGCGTGCTGCCGATCCTACAGTAACAACCCTCAGTCCAGACCAATCTTAGACTGGGAATGAA
CTCTGTATGCTTAGAT
Found at i:14613547 original size:26 final size:26
Alignment explanation
Indices: 14613511--14613563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14613501 CCAGTTTGAT
14613511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14613537 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14613563 C
1 C
14613564 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14614420 original size:26 final size:26
Alignment explanation
Indices: 14614391--14614443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14614381 CCGGTCTGAT
*
14614391 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14614417 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14614443 C
1 C
14614444 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14614819 original size:877 final size:888
Alignment explanation
Indices: 14612608--14614926 Score: 2954
Period size: 905 Copynumber: 2.6 Consensus size: 888
14612598 ACTCTGTATG
* *
14612608 CTTAGATTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * ** * *
14612673 ATAAAACGAGCGTACGGGCGTTTAGCCGGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
* * * *** * * ** *
14612738 GGTCCCCCTCTTCGTGCTGCCGATCTTGCTGTAACCACCCTCGATCCGGTCTGATCTTAGACTGG
131 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTAAGACTGG
* * * * * **
14612803 GAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAACGGGCGGGTGGGTGGGTAGGCACTAC
196 GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTAC
* * * *
14612868 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGTACCGATAGAGTGGTAGGTGGGTTTAGGCACAT
261 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** *
14612933 CTTCATATTTCTGTGTGATAATGCCATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGC
326 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** **
14612998 CTTCATGTGAAGTTTCATGTTAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTA
391 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTA
*
14613063 CGGTTTGAGATTTTTTAATATTTCTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGATGTGATCC
455 CGGTTCGAGATTTTTTAATATTTCTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGATGTGATCC
* *
14613128 TTGTATTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGA
* *
14613193 CCATTTGACAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
585 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* *
14613258 TCAAATGCTCTTCAAGGGGGTCTGAGTTCTCCAGGCTTGATGAGGGATAGGGGGCCAATATAAGG
650 TCAAATGCTCTTCAAGGGGGTCTGAGTTCTCCAGGCTTGATGAGAGATAGGAGGCCAATATAAGG
* * * *
14613323 GCCAACTAACAGCACCCATCGCACATCATGTGCGTACACCCCCCCCGACGCCCCGATCGCCAGAA
715 GCCAACTAACAGCAACCATCACACATCATGTGCG-ACACACCCCCCGACCCCCCGATCGCCAGAA
* *
14613388 CCTCAATGCCGCTGGTCAGGTTCTCCAACGATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATG
779 CCCCAATGCCGC--G-CAGG-T-TCCAACGA-GCTCT-GC----GT--CCCGGCGAAGAAAAATA
* * * * * * * *
14613453 CGCCACCAGCACATGCCGAGCCCAGTATGTGCTGCCATAACCCTTAGTCCAGTTTGAT
831 CGCCACCAGAACATGCCAAGCACAGCATATGCTGCCACAACCCTCAGTCCAGTCTGAT
*
14613511 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
14613576 ACGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGA-GGGCGGGATGCACAAGCCGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
* * * * * *
14613640 GGTCCTCCTCTGTGTGGTGTCGATCCTGCTACCGCAACCCT-TATTTTGGT-CAGATCTAAGACT
131 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCTGGTCCA-ATCTAAGACT
* *
14613703 GGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCGGGCCGACGGG
194 GGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGG-AGG--G-CGGG
*
14613768 CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
255 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14613833 GCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCC
320 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CC
*
14613897 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAA
384 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* ** * **
14613962 CTTTTATGGTTCGAGATTTTTTTAA-AGTTT-TTTGGTAGGAGTTTTGGATCCAAACTTTTTAGA
449 CTTTTACGGTTCGAGA-TTTTTTAATA-TTTCTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGA
*
14614025 TGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGA
512 TGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGA
14614090 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
577 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
14614155 ATTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGAGGCCA
642 ATAAAATCTCAAATGCTCTTCAAGGGGGTCTGAGTTCTCCAGGCTTGATGAGAGATAGGAGGCCA
* ** * *
14614220 ATATAAGGGCCAAGTGCCAGCAACCATCACACATCATGTGCG-CACACCCCCCGGCCCCCTCTAT
707 ATATAAGGGCCAACTAACAGCAACCATCACACATCATGTGCGACACACCCCCCGACCCCC-CGAT
* * *
14614284 CGTC-GAAACCCCAATGCCGC-CA-G-T-C-A-G-G-T-T-C-T-CCGGTGAAGAAAAATACGGC
771 CGCCAG-AACCCCAATGCCGCGCAGGTTCCAACGAGCTCTGCGTCCCGGCGAAGAAAAATACGCC
* * *
14614336 AGCAGAACATGCCCAAGCACAGCATATGCTGCCACAACCCTCGGTCCGGTCTGAT
835 ACCAGAACATG-CCAAGCACAGCATATGCTGCCACAACCCTCAGTCCAGTCTGAT
*
14614391 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
14614456 ACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAAAGGGGCGGGATGC-CTAAGCCGAGGATCGGCC
66 ACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCAC-AAGCCGGGGATCGGTC
* * * * *
14614520 TGGTCCCCCTCTGCGTGCCGTCGATCCAGCTGCCGTAACCCTCGGTCTGGTCCAATCTAAGACTG
130 GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTAAGACTG
* * * * * * *
14614585 GGAATGAACTCCGTATACCTATGCCAACCGATGAAATGAGTGGGTGGGCAGGAGGGCGGGCACTA
195 GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTA
* * * *
14614650 CGTCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACA
260 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
14614715 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAT
325 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
14614780 CCTTCACATGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
390 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTT
* * * * * * ** * * **
14614845 GCGGTT-TAGGATTTTTTAAAATTTTTTCGGACGGAGTTTTAAACCCAAACATGGTAGACATGAT
454 ACGGTTCGA-GATTTTTTAATATTTCTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGATGTGAT
*
14614909 CCTTGTATTTTTATTGGC
518 CCTTGTATTTTTGTTGGC
14614927 TGAGGCATAC
Statistics
Matches: 1239, Mismatches: 156, Indels: 67
0.85 0.11 0.05
Matches are distributed among these distances:
877 168 0.14
878 86 0.07
879 26 0.02
880 130 0.10
881 119 0.10
882 3 0.00
887 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 1 0.00
899 1 0.00
900 2 0.00
901 1 0.00
902 117 0.09
903 105 0.08
904 19 0.02
905 291 0.23
906 163 0.13
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCAATCTAAGACTGG
GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGAGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTAC
GGTTCGAGATTTTTTAATATTTCTTCAGAAGGAGTTTTGGATCCAAACTTGGTAGATGTGATCCT
TGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
CAAATGCTCTTCAAGGGGGTCTGAGTTCTCCAGGCTTGATGAGAGATAGGAGGCCAATATAAGGG
CCAACTAACAGCAACCATCACACATCATGTGCGACACACCCCCCGACCCCCCGATCGCCAGAACC
CCAATGCCGCGCAGGTTCCAACGAGCTCTGCGTCCCGGCGAAGAAAAATACGCCACCAGAACATG
CCAAGCACAGCATATGCTGCCACAACCCTCAGTCCAGTCTGAT
Found at i:14616346 original size:26 final size:26
Alignment explanation
Indices: 14616317--14616369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14616307 CCAGTCCGAT
14616317 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
14616343 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
14616369 C
1 C
14616370 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:14618746 original size:26 final size:26
Alignment explanation
Indices: 14618710--14618760 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14618700 TTGACTTAGG
*
14618710 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACAGAGTTCATCCCCAGTCTAAC
*
14618736 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
14618761 GATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAC
Found at i:14620721 original size:26 final size:26
Alignment explanation
Indices: 14620685--14620735 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14620675 TGACTTAGGT
*
14620685 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
14620711 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
14620736 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:14621209 original size:26 final size:26
Alignment explanation
Indices: 14621173--14621223 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14621163 TGACTTAGGC
14621173 ATACGGAGTTCAATCCCAGTCTAAGG
1 ATACGGAGTTCAATCCCAGTCTAAGG
* *
14621199 ATACGGTGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCAATCCCAGTCTAAG
14621224 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCAATCCCAGTCTAAGG
Found at i:14622093 original size:26 final size:25
Alignment explanation
Indices: 14622064--14622115 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14622054 GTTGACTTAG
14622064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
14622090 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
14622115 G
1 G
14622116 ATTGGACCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:14623189 original size:492 final size:492
Alignment explanation
Indices: 14622265--14623222 Score: 1508
Period size: 492 Copynumber: 1.9 Consensus size: 492
14622255 GGGGTCGGGC
* *
14622265 GGGTGTGCGCACATGATGGGCATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTT
1 GGGTGTGCGCACATGATGGGCATTGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
14622330 ATCAAACCTCGAGAACTCGCACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGGA
66 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGGA
* *
14622395 GCCATTAAAGTGTCTGAAATGCGGACACTTTTATCAAATGGTCACAAAGTCTTGTAAACTTTGAG
131 GCCATTAAAGTGTCTAAAATGCGGACACTTTTATCAAATGGTCACAAAATCTTGTAAACTTTGAG
14622460 TTTTTACCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
196 TTTTTACCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
* * ** * * *
14622525 CCAATACTCCTTTCGAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
261 CCAAAAATCCTACCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAA
* * * * **
14622590 AATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
326 AATAAAAAACGAGTCGTCTTGCCATGAAACTCCACGTAAAGGCTTAACAGACCATTGTATGAATT
** * *
14622655 TACAAGCCATAAGTATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACC
391 TACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACA
14622720 CTATCGATCCATGGGGTTCTGACGTTCGGGGGGCCGG
456 CTATCGATCCATGGGGTTCTGACGTTCGGGGGGCCGG
*
14622757 GGGTGTGCGCACATGATGTGCGA-TGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGTGTGCGCACATGATGGGC-ATTGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
14622821 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
65 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGG
* *
14622886 AGCCATTAAAGTGTCTAAAATAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
130 AGCCATTAAAGTGTCTAAAAT-GCGGACACTTTTATCAAATGGTCACAAAATCTTGTAAACTTTG
* * *
14622950 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
194 AGTTTTTACCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
** **
14623015 TTCCAAAAATCCTACCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATTGTA
259 GGCCAAAAATCCTACCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATA
14623079 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTCCACGTAAAGGCTTAACAGACCATTGTATGA
323 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTCCACGTAAAGGCTTAACAGACCATTGTATGA
** *
14623144 ATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
388 ATTTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGAGCCTAAACCCACCTACC
14623209 ACACTATCGATCCA
453 ACACTATCGATCCA
14623223 CAGCTTGCGC
Statistics
Matches: 423, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
491 1 0.00
492 420 0.99
493 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (492 bp):
GGGTGTGCGCACATGATGGGCATTGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGGA
GCCATTAAAGTGTCTAAAATGCGGACACTTTTATCAAATGGTCACAAAATCTTGTAAACTTTGAG
TTTTTACCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
CCAAAAATCCTACCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATAAAA
AATAAAAAACGAGTCGTCTTGCCATGAAACTCCACGTAAAGGCTTAACAGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACA
CTATCGATCCATGGGGTTCTGACGTTCGGGGGGCCGG
Found at i:14623985 original size:26 final size:26
Alignment explanation
Indices: 14623937--14623987 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14623927 CCAAACAATT
***
14623937 TTTTAAAAATCCTGAACCGTAAAAAG
1 TTTTAAAAATCCTGAAAAATAAAAAG
*
14623963 TTTTAAAAATCGTGAAAAATAAAAA
1 TTTTAAAAATCCTGAAAAATAAAAA
14623988 ACGAGTCATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.27
Consensus pattern (26 bp):
TTTTAAAAATCCTGAAAAATAAAAAG
Found at i:14624396 original size:26 final size:26
Alignment explanation
Indices: 14624360--14624409 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14624350 TGACTTAGGT
14624360 ATACAGAGTTCATTCCAAGTCTAAAC
1 ATACAGAGTTCATTCCAAGTCTAAAC
* *
14624386 ATACGGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCAAGTCTAA
14624410 GATTGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAAC
Found at i:14624563 original size:905 final size:902
Alignment explanation
Indices: 14622747--14629106 Score: 5858
Period size: 906 Copynumber: 6.9 Consensus size: 902
14622737 TCTGACGTTC
*
14622747 GGGGGGCC-G-GGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
14622810 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
66 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
14622875 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
131 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
14622940 GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
196 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** *
14623005 CCAAGTTTGGTTCCAAAA-ATCCTACCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTT
261 CCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTT
* * * * **
14623068 CAAAAATTGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTCCACGTAAAGGCTTAACAGA
324 CAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
14623133 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAA
389 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * * * *
14623198 ACCCACCTACCACACTATCGATCCACAGCTTGCGCATTCAGTCTCTCTGGCCGACGTAGTG-CT-
454 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG
* *
14623261 --CG--CCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
519 CCCGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * *
14623322 CGGACCGAACCGAGAGTTGCGGCAGTAGTATCAGTG-A-AATACAGAAGGGGGACCCGGCCGATC
584 CAGACCGGACCAAGGGTTGCGGCAGCAGGAT-TG-GCAGCACACAGAA-GGGGACCCGACCGATC
* * * * * *
14623385 CCTGGCTTGCGCAACTCGCCCCTCTGGCCCGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGACT
646 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* ** * * * * **
14623450 TAGGTATATTGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCGGACTG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
** * * **
14623515 GACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCACCG
776 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
14623580 GGGCACCATCGTCGAAGCATTGTCAGAGAACCTGATCGACGGCATTTGGGTTCCG-GTGATCG
841 GGGCACCATCGCCG-AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGTGATCG
* * *
14623642 GGGTGGCCGGGGTGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
1 GGGGGGCC--GGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* ** *
14623707 GCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAG
64 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
14623772 GTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAACC
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *** * *
14623837 TTGTACACATCAAGTTTTTAGCTGAATTTTTTTGTGCGCCCCAA-AAAAATAAAACGATCACGTC
194 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
14623901 TACCAAGTTTGGGGCCAAAACACCTTCC-AAACAATTTTTTAAAAATCCTGAACCGTAAAAAGTT
259 TACCAAGTTTGGGGCCAAAACACCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
14623965 TTAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
323 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * **
14624030 ACCATTATATGAATTTACAAGCCATAAAAATGGTATTGCCACATAGAAATATGAAGATGTGCCTA
388 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* * *
14624095 AACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAGTGCCT
453 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCT
* * * *
14624160 GCCCGCCCACCCACCCGCTCATTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAA
518 GCCCG-CC-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
14624225 GATCAGACCAGACCAAGGGTTGCGGCAGCAGGATTGACAGCATGTAGAAGGGGACCCGAACGATC
581 GATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAGGGGACCCGACCGATC
* * * * *
14624290 CCCGGCATGCGTATGCCGCCCCTATGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACT
646 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
14624355 TAGGTATACAGAGTTCATTCCAAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
14624420 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
776 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
14624485 GGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGTCGGCATTGGGGTTCCGAG-GATCG
841 GGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGTGATCG
* *
14624547 GGGGGGCTGCGGTGGGGTGTGCGCACATGTTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
1 GGGGGGC--CGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
14624612 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
64 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
14624677 GTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATC
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
14624742 TTGTAGA-TATCTAGTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
194 TTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
14624806 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAGAATCTCAAACCGCAAAAAGT
258 CTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAA-AATCCCGAACCGTAAAAAGT
* * * *
14624870 TTCCAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGG
322 TTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
14624935 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
387 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
** *
14625000 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGAGAC
452 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C
* * * *
14625065 CTCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAA
516 CT---GCCCG-CC-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * * * * **
14625130 TCTAAGATCAAACTGGACTGAGGGTTGCAGCAGCAAGATCGACAGCATGCAG-AGAGGGACCCGA
576 TCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAG-GGGACCCGA
*
14625194 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
640 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
14625259 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATT
705 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * *
14625324 GGACCAGACCGAGGGTTG-CAGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATGTTTC
770 GGACCAGACCGAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * *
14625388 TTCATCGGGGCACCATCGCCAGAGCATCGTC-GATGAACCTGATCGACGGCACTGGGGTTCCGA-
834 TTCGTCGGGGCACCATCGCC-GAGCATCGTCGGA-GAACCTGACCGACGGCATTGGGGTTCCGAG
** *
14625451 CCAT-T
897 TGATCG
14625456 GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
14625521 CCCTTATCCCTCATCAAACCTTAAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
66 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
**
14625586 TTAATGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
131 TTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
14625650 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGATCACGTCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* ** *
14625715 ACAAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
260 ACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* *
14625780 AAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGAC
325 AAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
14625845 CATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGCAGAAATATGAAGGTGTGCCTAAA
390 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
* * *
14625909 CCCACATACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGACTGC
455 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGC
** * *
14625974 CTGCCCGCCCGCCTGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
516 CTGCCCGCCC-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * *
14626039 AAGATTAGACCGGACCAAGGGTTTTGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGACTGA
579 AAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAGGGGACCCGACCGA
* * ** * * *
14626104 TCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGTGCGCTTGTTTCATGGCTTGA
644 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * *
14626169 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAATCTAAGACTGGAC
709 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * * * * * ** * ** ** ****
14626234 CCGACCAAGGGTTGTGGCA--ACAGGATCGGCAGCACGCA-GAGGGGGACCCGATCGATCCCCGG
774 CAGACCGAGGGTTGTGACAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCG--C-AT--TTTT
* ** * * * * * ** *
14626296 CTTGCGTATGCCGC-CCCTCTGCCG-GCTGAGCGCCCGCACG--CTTGTTTCG-TGGCTTGACTT
833 CTT-CGT-CGGGGCACCATC-GCCGAGC--ATCG-TCGGA-GAACCTG-ACCGACGGC---A-TT
** * * *
14626356 AGGCATACGGAGTTCATTCCCAG
886 -GGGGTTCCGAG-TGA-T--C-G
***** ****** * * * * * **
14626379 TCTAAGCATACAAAGTTCATTCCCAATATAAGATTAGACTGGACCGA-GGGTTGC-GACAACACA
1 GGGGGGC-CGGTGGGGT-GTGCGC-ACAT--GA-T-G--T-G--CGATGGG-TGCTG---GTAC-
* * * ** * * * * * ** * * ** ** ***
14626442 TGCTAGGCTCAGGCATGTGATGGTGCCGCATTTTTCTTCGTCGAGGCACCATCA-TCGGAGAACC
49 T--T-GGC-C---CTTAT-ATTG-GCC-CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* ** ** * ** ** * *** *
14626506 TGACCGGCAGCA-TTG-G-GGTTACGGCGATCGGGGGGGCCGGGGT-GGGGTGTGCGCACATGAT
104 TTA-AAG-AGCATTTGAGATTTTACAG-G-T--TTGCTGCC--AGTAGCCAT-T----A-AAG-T
* ** * * * ** ** * ** *
14626567 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
154 GTCTGA--AATG--GG-----GACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--
** *** *** ** * *
14626632 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTG
199 CACTTCGAGTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAAAAT-AC--
* * ** * *
14626696 AAATCGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGA
247 -AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C----AC-CTTCCGA------A----A
** * * * ** * *
14626756 ATTTTTTTGTGCATGCCAAGAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
291 A---AATT-T---T---AA-AAAATC-C--CGAAC-CG--TAAAAAGTTT-----CAAAAAT-CG
* * **
14626821 TCCGAGAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
333 T--GA-AAA---ATAAAAAA---CG-A--GT----CG--TC------T-TG--CCAT-G-AAAC-
* *
14626886 AGTCGTCTTACCATGAA-TCTTCACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCAT
368 --T--TC--A-CGTGAAGGC-T----T-AAGG-------GACCATTGTATGAATTTACAAGCCAT
** * * *
14626950 AAAAATGGCATTGGCACATAGAAATATGAAGAAGTGCCTAAACCCACCTACAACCTTATCGATCC
413 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
14627015 ACGGCTTGCGTATCCCCTCTCTCTGGTCGACGTA--G--TGCCCG--CCTGCCCGCTCGTTTCAT
478 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCCGCCCGCTCGTTTCAT
** *
14627074 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGCA
543 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCA
* * * * * * * *
14627139 GCAGGATTGGCAGCACACAGAGGGGGACCTGGCCGATCCTCGACTTGTGCATCCCGCTCCACTGG
608 GCAGGATTGGCAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * **
14627204 CCGGTTGAGCGCCCGTACACTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
673 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * **
14627269 AAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGTAGCACATGCTG
738 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGCACATGCTG
* *
14627334 GGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGA
803 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGTCGGA
* * *
14627399 GAACTTGACCGGCGGCATTGCGGTTCCGA-TGATCG
867 GAACCTGACCGACGGCATTGGGGTTCCGAGTGATCG
* * *
14627434 GGAGGGCC-G-GGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTTGC
1 GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
14627496 CCCCTATCCCTCATCAAGCCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGG
66 CCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
14627560 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
130 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
14627625 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAACACAAGGATCACGTCT
195 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
14627690 ACCAAGTTTGGGGCCAAAA-ACTCTTTCCGAGAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
260 ACCAAGTTTGGGGCCAAAACAC-C-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
** * * * * **
14627754 TCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCACATGAAGGCCTAAAAG
323 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
14627819 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTG
388 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* **
14627884 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTTACCGGCGTAGTGCAC
453 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C
* * * *
14627949 -ACCCG--CCCGCTCGCTCGTTTCATCGGTTAGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAG
517 TGCCCGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * ** * * * * * * *
14628011 ATTGGACCGAACCGAGGGTTGCAACAGCATGATCGGCATCACATAGAGGGGGACCCGGCCAAT-C
582 ATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAGGGGACCCGACCGATCC
* * * *
14628075 CCGGCTTGTGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTT
647 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
14628140 AGGCATA-AGGAGATCATTCCCAGTCTAAGCATACGGGGTTCATTCCCAATCTAAGATCGGACTA
712 AGGCATACA-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
* * * *
14628204 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTAGCCG
776 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
14628269 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCG-GTGATCA
841 GGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGTGATCG
* * *
14628331 GGTGGGCCAGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGACCCTTATATTGG
1 GGGGGGCC-GGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
14628395 TCCCCTATCCCTCATCAAACCTGC-AGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAG
65 CCCCCTATCCCTCATCAAACCT-CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
14628459 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATTGTCACAAAAT
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAAT
* *
14628524 CATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGT
193 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
14628589 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTT
258 CTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
** *
14628654 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
323 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
14628719 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGGTGTGCCTA
388 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* * * * *
14628784 AACCCACCTACCACCCTATTGATCCACAGCTTGCCCATCCCGTCTATCTGGTCGGCGTAGTGACA
453 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----
*
14628849 GCCTGCCCGCCGGCCCGCCCGCTCGTTTTC-TCGGTTGGCTTAGGCATACGAAGTTCA-TCCCTA
514 GCCTGCCCGCC--CCCGCCCGCTCG-TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC-A
* * * *
14628912 GTCTACGATCAGACCGGACCAAGGGTTACAGCAGCAGGATTGGCAGCACGCAG-AGGGGAACCCG
575 GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAGGGG-ACCCG
* ** * *
14628976 ATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCATGG
639 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
14629041 CTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAAGTTCATTCCCAGTCTAAGA
704 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGA
14629106 T
768 T
14629107 CAGACTGGAC
Statistics
Matches: 4440, Mismatches: 726, Indels: 583
0.77 0.13 0.10
Matches are distributed among these distances:
894 112 0.03
895 7 0.00
896 2 0.00
897 232 0.05
898 350 0.08
899 218 0.05
900 346 0.08
901 105 0.02
902 4 0.00
903 1 0.00
904 22 0.00
905 465 0.10
906 657 0.15
907 383 0.09
908 94 0.02
909 115 0.03
910 365 0.08
911 16 0.00
912 4 0.00
913 2 0.00
914 4 0.00
915 2 0.00
916 8 0.00
918 4 0.00
919 2 0.00
923 2 0.00
924 2 0.00
925 5 0.00
926 3 0.00
927 1 0.00
928 2 0.00
929 1 0.00
930 1 0.00
931 2 0.00
932 1 0.00
933 2 0.00
934 6 0.00
935 6 0.00
937 8 0.00
938 1 0.00
940 4 0.00
941 5 0.00
942 1 0.00
943 1 0.00
944 6 0.00
945 3 0.00
946 8 0.00
947 12 0.00
948 18 0.00
949 12 0.00
950 3 0.00
951 4 0.00
952 5 0.00
954 1 0.00
955 5 0.00
956 3 0.00
957 2 0.00
958 5 0.00
959 2 0.00
960 2 0.00
962 3 0.00
963 2 0.00
966 2 0.00
967 5 0.00
968 1 0.00
969 2 0.00
973 3 0.00
974 6 0.00
975 6 0.00
976 7 0.00
977 3 0.00
978 14 0.00
979 3 0.00
980 8 0.00
981 3 0.00
982 3 0.00
983 9 0.00
984 5 0.00
985 2 0.00
986 2 0.00
987 4 0.00
988 4 0.00
989 2 0.00
990 2 0.00
991 6 0.00
992 9 0.00
993 3 0.00
994 2 0.00
995 7 0.00
996 4 0.00
997 13 0.00
998 2 0.00
999 4 0.00
1000 8 0.00
1001 6 0.00
1002 3 0.00
1006 3 0.00
1007 1 0.00
1008 5 0.00
1010 2 0.00
1013 4 0.00
1014 1 0.00
1015 2 0.00
1017 7 0.00
1018 2 0.00
1019 1 0.00
1020 2 0.00
1021 5 0.00
1022 1 0.00
1023 3 0.00
1024 322 0.07
1025 315 0.07
1026 364 0.08
1027 278 0.06
1028 203 0.05
1029 260 0.06
1030 464 0.10
1031 368 0.08
1032 319 0.07
1033 203 0.05
1034 209 0.05
1035 229 0.05
1036 331 0.07
1037 231 0.05
1038 248 0.06
1039 219 0.05
1040 206 0.05
1041 212 0.05
1042 193 0.04
1043 158 0.04
1044 217 0.05
1045 123 0.03
1046 98 0.02
1047 112 0.03
1048 104 0.02
1049 107 0.02
1050 117 0.03
1051 293 0.07
1052 532 0.12
1053 190 0.04
1054 559 0.13
1055 317 0.07
1056 595 0.13
1057 161 0.04
1058 106 0.02
1059 420 0.09
1060 271 0.06
1061 38 0.01
1062 31 0.01
1063 41 0.01
1064 47 0.01
1065 105 0.02
1066 57 0.01
1067 50 0.01
1068 43 0.01
1069 85 0.02
1070 32 0.01
1071 266 0.06
1072 29 0.01
1073 197 0.04
1074 44 0.01
1075 63 0.01
1076 31 0.01
1077 28 0.01
1078 198 0.04
1079 52 0.01
1080 32 0.01
1081 170 0.04
1082 30 0.01
1083 100 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GGGGGGCCGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC
CGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCAAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAAGGGGACCCGACCGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
AGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGCCGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAGTGATCG
Found at i:14625297 original size:26 final size:26
Alignment explanation
Indices: 14625268--14625320 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14625258 GTTGACTTAG
14625268 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14625294 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14625320 G
1 G
14625321 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14626204 original size:26 final size:26
Alignment explanation
Indices: 14626174--14626226 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14626164 CTTGACTTAG
* *
14626174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
14626200 GCATACGAAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14626226 G
1 G
14626227 ACTGGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:14626384 original size:184 final size:183
Alignment explanation
Indices: 14626015--14626431 Score: 577
Period size: 184 Copynumber: 2.3 Consensus size: 183
14626005 GTTGGCTTAG
* * * * * *
14626015 GCATACAGAGTTCATTCCTAGTCTAAGATTAGACCGGACCAAGGGTTTTGGCAGCAGGATTGGCA
1 GCATACA-AGTTCATTCC-AATCTAAGACTAGACCCGACCAAGGGTTGTGGCAACAGGATCGGCA
*
14626080 GCACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGC
64 GCACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
**
14626145 CCGTGCGCTTGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 CCGCACGCTTGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
14626200 GCATACGAAGTTCATTCTCAATCTAAGACTGGACCCGACCAAGGGTTGTGGCAACAGGATCGGCA
1 GCATAC-AAGTTCATTC-CAATCTAAGACTAGACCCGACCAAGGGTTGTGGCAACAGGATCGGCA
* * * *
14626265 GCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGTATGCCGCCCCTCT-GCCGGCTGAGCG
64 GCACACAGAGGGGGACCCGACT-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
14626328 CCCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 CCCGCACGCTTGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
14626384 GCATACAAAGTTCATTCCCAATATAAGATTAGACTGGACCGAGGGTTG
1 GCATAC-AAGTTCATT-CCAATCTAAGACTAGACCCGACCAAGGGTTG
14626432 CGACAACACA
Statistics
Matches: 206, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
184 105 0.51
185 99 0.48
186 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (183 bp):
GCATACAAGTTCATTCCAATCTAAGACTAGACCCGACCAAGGGTTGTGGCAACAGGATCGGCAGC
ACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTTGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14627274 original size:26 final size:26
Alignment explanation
Indices: 14627245--14627297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14627235 GTTGACTTAG
14627245 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
14627271 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14627297 G
1 G
14627298 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14628171 original size:26 final size:26
Alignment explanation
Indices: 14628142--14628194 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14628132 GTTGACTTAG
*
14628142 GCATAAGGAGATCATTCCCAGTCTAA
1 GCATAAGGAGATCATTCCCAATCTAA
* * *
14628168 GCATACGGGGTTCATTCCCAATCTAA
1 GCATAAGGAGATCATTCCCAATCTAA
14628194 G
1 G
14628195 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGATCATTCCCAATCTAA
Found at i:14628675 original size:900 final size:897
Alignment explanation
Indices: 14626200--14629120 Score: 4065
Period size: 900 Copynumber: 3.3 Consensus size: 897
14626190 CCCAGTCTAA
* * * * * ** *
14626200 GCATACGAAGTTCATTCTCAATCTAAGACTGGACCCGACCAAGGGTTGTGGCAACAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * *
14626265 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATGCCGCCCCTCT-GCCGGCTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
14626329 CCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAG
131 CCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
* * * * *
14626394 TTCATTCCCAATATAAGATTAGACTGGACCGAGGGTTGCGACAACACATGCTAGGCTC-AGGCAT
196 TTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA-GCAT
* * *
14626458 GTGATGGTGCCGCATTTTTCTTCGTCGAGGCACCAT--------CAT--CGGAGAACCTGACCGG
260 GTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGG
* * * *
14626513 C-AGCATTGGGGTTACGGCGATCGGGGGGGCCGGGGTGGGGTGTGCGCACATGATGTGTGATGGG
325 CGA-CATTGGGGTTCCGGTGATCGGGAGGGCC--GG-GGGGTGTGCGCACATGATGTGCGATGGG
14626577 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCCCC
386 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGC-AGAACTCACACCCCC
*
14626641 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
14626706 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
515 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
14626771 CCAAGAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAGTTTTA
580 CCAAGAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTA
*
14626836 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTACCATG
645 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
14626901 AATCTTCACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
710 AATCTTCACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
14626966 CATAGAAATATGAAGAAGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCTTGCGTATCCC
775 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * *
14627031 CTCTCTCTGGTCGACGTAGTG---CCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAG
840 GTCTCTCTGGTCGGCGTAGTGCACCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * *
14627086 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * *
14627151 GCACACAGAGGGGGACCTGGCCGATCCTCGACTTGTGCATCCCGCTCCACTGGCCGGTTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
14627216 CCGTACACTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
* ** * * * ** * *
14627281 TTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGTAGCACATGCTGGGCTTGGGCATG
196 TTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATG
* *
14627346 TGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCGG
261 TGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGG
* * *
14627411 CGGCATTGCGGTTCCGATGATCGGGAGGGCC-GGGGG-GTGCGCACATGATGTGCGATGGGTGCT
325 CGACATTGGGGTTCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
14627474 GGTACTTGGCCCTTACATTTGCCCCCTATCCCTCATCAAGCCTAG-AGAACTCACACCCCCTTAA
390 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GCAGAACTCACACCCCCTTAA
*
14627538 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
454 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
14627603 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
519 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
14627668 GAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCTTTCCGAGAAAATTTTAAAA
584 GAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAGAAAATTTTAAAA
* *
14627733 AATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAT
648 AATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAT
* *
14627798 CTTCACATGAAGGCCTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
713 CTTCACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* *
14627863 AGAAATATGAAGATGTACCTGAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
778 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
*** * *
14627928 TCTCTTACCGGCGTAGTGCACACCCGCCCGCTCGCTCGTTTCATCGGTTAGCTTAG
843 TCTCTGGTCGGCGTAGTGCAC-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * *
14627984 GCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTGCAACAGCATGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * * *
14628049 TCACATAGAGGGGGACCCGGCCAAT-CCCGGCTTGTGCATCCCGCCCCTCTGGTCGACTGAGCGC
66 GCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * **
14628113 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGATCATTCCCAGTCTAAGCATACGGG
131 CCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACA-GAGTTCATTCCCAGTCTAAGCATACGAA
*
14628177 GTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
195 GTTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCAT
*
14628242 GTGCTGGTGCCGCATTTTTCTTAGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
260 GTGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCG
* * *
14628307 ACGACATTGGGGTTCCGGTGATCAGGTGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
324 GCGACATTGGGGTTCCGGTGATCGGGAGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
14628372 CTGATACTTGACCCTTATATTGGTCCCCTATCCCTCATCAAACCTGCAGAACTCACACCCCCTTA
388 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGCAGAACTCACACCCCCTTA
*
14628437 AAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
453 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-
* * * *
14628502 TTTTTTGAAATTGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCC
517 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
14628567 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
582 AAGAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTAAA
* * * ** *
14628632 AAATCTCGAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
647 AAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
14628697 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
712 TCTTCACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
14628762 CAGAAATATAAAGGTGTGCCTAAACCCACCTACCACCCTATTGATCCAC-AGCTTGCCCATCCCG
777 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCG
*
14628826 TCTATCTGGTCGGCGTAGTGACAGCCTGCCCGCCGGCCCGCCCGCTCGTTTTC-TCGGTTGGCTT
841 TCTCTCTGGTCGGCGTAGTG-CA------CC-CC-GCCCGCCCGCTCG-TTTCATCGGTTGGCTT
14628890 AG
896 AG
* * ** * *
14628892 GCATACGAAGTTCA-TCCCTAGTCTACGATCAGACCGGACCAAGGGTTACAGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCC-AGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGC
* * * *
14628956 AGCACGCAGAGGGGAACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
65 AGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
14629021 CCCGCACGCTTGTTTCATGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAA
130 CCCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG-A
* *
14629086 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAG
194 AGTTCATTCCCAATCTAAGATCAGACTAGACCGAG
14629121 TTCATTCCCA
Statistics
Matches: 1789, Mismatches: 204, Indels: 60
0.87 0.10 0.03
Matches are distributed among these distances:
886 96 0.05
887 152 0.08
893 250 0.14
894 224 0.13
895 4 0.00
896 1 0.00
897 229 0.13
898 148 0.08
899 7 0.00
900 354 0.20
901 100 0.06
906 1 0.00
907 7 0.00
908 91 0.05
909 93 0.05
910 32 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAGGATCGGCA
GCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAG
TTCATTCCCAATCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATG
TGCTGGTGCCGCATTTTTCTTAGTCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGGC
GACATTGGGGTTCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGCAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGA
AAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTT
CACGTGAAGGCCTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
CTGGTCGGCGTAGTGCACCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:14629081 original size:26 final size:27
Alignment explanation
Indices: 14629051--14629104 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
14629041 CTTGACTTAG
*
14629051 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGAAAGTTCATTCCCAGTCTAA
14629077 GCATACGAAAGTTCATTCCCAGTCTAA
1 GCATACGAAAGTTCATTCCCAGTCTAA
14629104 G
1 G
14629105 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATACGAAAGTTCATTCCCAGTCTAA
Found at i:14632985 original size:26 final size:26
Alignment explanation
Indices: 14632933--14632985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14632923 GTTGGCTTAG
*
14632933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
14632959 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14632985 G
1 G
14632986 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14633827 original size:26 final size:26
Alignment explanation
Indices: 14633797--14633849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14633787 GTTGACTTAG
* *
14633797 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14633823 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14633849 G
1 G
14633850 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14634739 original size:26 final size:26
Alignment explanation
Indices: 14634703--14634754 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14634693 GTTGACTTCG
14634703 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14634729 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14634755 TATCAAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14635641 original size:26 final size:26
Alignment explanation
Indices: 14635605--14635657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14635595 GTTGACTTAG
* * *
14635605 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
14635631 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
14635657 G
1 G
14635658 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:14635683 original size:902 final size:901
Alignment explanation
Indices: 14633435--14644463 Score: 13468
Period size: 902 Copynumber: 12.4 Consensus size: 901
14633425 GTAAAATCCT
* * *
14633435 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGATCATTGTATGAATTTACAAGTCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
**
14633500 AAAAATGGCATTGGCATGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
14633565 ACGGCTTACGCATCTCGTCTTTCTGGCTGACGTAGTGCCCG-C--CCG--CGCCCGTTCATTTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
* ** ** * **
14633625 TCGGTTGGCTTAGGCATACGGATTTCATTCCCAGTCTAAGATTGGACTGGACAGAGGGTTACAGC
196 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGC
* * * * **
14633690 AGCAGGATC-GACAGCACACAGAGGGGGACCCGACCGGTCCCCAGTTTTTGCATCCCGCCCCTCT
261 AGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
14633754 GGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
325 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * ** * *
14633819 CTAAGCATACGAAGTTCTTTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGGGGCAGCACATGC
390 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * * * * *
14633884 TGGCCTCGGGCATGTGCTGGTGGCGTATTGTTCTTCATCGGGGCACCAACGCCGGAGCATCATTG
455 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * * * *
14633949 GAGAACCTGACCGGCGACATTGGGGTT-CTAGCGATCGGGGGAGCCGAGGGGTGTGCGCACATGA
520 GAGAACCTGACCGGCGGCATTGGGGTTCCGA-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
14634013 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
584 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
14634078 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
649 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
14634142 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
714 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
14634207 TTTGTGCATGCCAACAAAAGTACAAGGATCAAGTCTACCAAGTTTGGGACCAAAACTCCTTCTGA
779 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CA
*** * *
14634272 AAATTTTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
843 AAAAAATTTTAAAAAATCTCAAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * ***
14634332 GAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAGGAGGT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14634397 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCC-ATTGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
14634461 ACGGCTTGAGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGACCGCTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CCG--C-C-CGCCCGCTCG
* ** * **
14634526 TTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTT
191 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * **
14634591 GT-GACAGCAGGATCAGTAGCACGTAGAAGGGGACTCGACCGATCCCAAGCTTGCGCATCCCGCC
256 GTAG-CAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
14634655 CCTCCGGCCGACTGAGCGCCCGCACGCTCGTGTCTTGGGTTGACTTCGGCATACGGAGTTCATTC
320 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * ** * * *
14634720 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAAACCGGACCAAGGTTTGCGGTAGCA
385 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * *
14634785 CATGCTGGGCTCGGGCATTTGCTGGTGTCGCATTTTTCTTCGTCGGGTCACCATCGTCGAAGCAT
450 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
** * * * * *
14634850 CGCCAGAGAACGTGACCAGCGGCATTGGGATTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCAC
515 CATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCAC
* *
14634915 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGA
580 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* **
14634980 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTG
645 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
14635045 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAA
710 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
** * * *
14635110 TTTTTTTGTGCATGTGAACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTACTT
775 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
14635175 CCAAAAAAATTTTAAAAAATCTCAAACTCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
840 CCAAAAAAATTTTAAAAAATCTCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * *
14635237 AAGTCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * * *
14635302 AAAAATTTCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * ** ** *
14635367 ACGACTTGCGCATCCCGTTTCTCTGGTCGAAATAGTGCCCGCCTGCCTGCCCGCCCATTCCTTTC
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCC-GCCCGCCCGCTCGTTTC
* * * *
14635432 GTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGAGTTGTGG
195 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAG
* * *
14635497 CAGCAGGATCAGCAGCACGCAGAGAGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
260 CAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
14635562 AGTCGGCTGAGCACCCGCACGTTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
325 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * ** ** *
14635627 CTAAGCATACAGAGTTCATTCCCACTCTAAGATCGGATTGGATTGAGGGTTGCGGTAGCACATGC
390 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * *
14635692 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--TACTAGACCATCAT
455 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-C-GGAGCATCAT
* * * * *
14635755 TGGAGAACCTGACTGGTGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTACGCACATG
518 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
14635820 ATGTGCGATTGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
583 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
14635885 CTCACTCCCCCTTAAAGAGCGTTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
648 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
14635950 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
713 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
14636015 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTCCA
778 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * * *
14636080 AATAACTTTTAAAAAATCCTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAC
843 AAAAAATTTTAAAAAAT-CTCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
14636140 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* ** * *
14636205 AAAAATGGAATTGGCATGTAGAAATATGAAGACATGCCTAAACCCACCTACAACCCTATCAATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
14636270 ACGGCTTGCGCATCACATCTCTCTGGCCGACGTA--G--CGCCT-------GCCCGCTCGTTTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
** * * * *
14636324 TCAATTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAAACTGAGGGTT-TCGG
196 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGT-AG
* * * * * * * * * **
14636388 TAGTAGGATCGGCACCAC-AAGAGGGGGACCCGGCCGATCCCCAGATTGTGCATCCCGAACC-CT
260 CAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
14636451 AGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA--
325 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
14636497 -T----AT--GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACACGT
390 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * *
14636555 TGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTTG-CTGGGGCACCATCGTCGGAGCATCGTC
455 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATC
* * * * ** *
14636619 GGAGAACCTTACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCCGGAAGGGCTGTGCGCACAT
519 GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGG--GGGGTGTGCGCACAT
* * *
14636684 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATAAAACCTTGAGA
582 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
** *
14636749 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCCCCGTTAAAGTGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
14636814 AGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
712 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** *
14636879 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTTGCCAAAACTCCTTCT
777 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
14636944 GAAAAAATTTTAAAAAATC-CTGAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
842 AAAAAAATTTTAAAAAATCTC-AAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
14637004 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14637069 AAAAATGGCATTGGCATGCATAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
14637134 ACGGCTTGCGTATCCCATCTCTCTGGCTAGA-ATAGTGCCCGCCTGCCCGCCCGCCCGTTCGTTT
131 ACGGCTTGCGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCTG-CCGCCCGCCCGCTCGTTT
* * * *
14637198 CGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGTG
194 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTA
* * * * * ** * *
14637263 GTAGCAGGATCAGCAGCACTCAAAGAGGGACTCGGTCTATCCCCAGCTTGCGCATCCCGCCCCTC
259 GCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
14637328 TGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
324 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *** * *
14637393 TCTAAGCATACAGAGTTCATTCCC-GTTCTAAGATCGGATTTGATCGAGGGTTGCGGTAGCACAT
389 TCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* *
14637457 GCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCAT
453 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * *
14637522 TGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCTGGGGGGGTGTGCGCACAT
518 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGC-CGGGGGGTGTGCGCACAT
* * *
14637587 GATGTGTGATTGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGA
582 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
14637651 ACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
14637716 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTCTTTAGCTGAATT
712 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ***
14637781 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCGCCACTCCTTCC
777 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
14637846 AAAAAACTTTTAAAAAATCCCGAACCGCAAAAAGTTTTC-AAAATCGTGAAAAATGGAAAAC
842 AAAAAAATTTTAAAAAATCTC-AAACGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAAC
*
14637907 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14637972 AAAAATGGCATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCCACCACCTTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
14638037 ACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTA--G--CG-CT------TGCCCGCTCATTTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
* * * * *
14638091 TCGATTGGCTTAGGCATACGGAGTTTATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGT-GC
196 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGC
* * * * * *
14638155 TAGCAGGCTCGGCACCAC-AAGAGGGGGACCAGACCGATCCCCGGATTGCGCATCCCGCCCC-CT
261 -AGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
14638218 AGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGA-TT-----TA--G-G--------CA--
325 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
14638264 -T----AT--GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACATGC
390 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* ** ** * ** * * * **
14638322 TGGGCTCGGGCATGTGCTGCTATCGTGTTTTTCTTTGTCGGCTCACCATCGCCAGAGCACCGCCG
455 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
* * *
14638387 GAGAACCTGACCGGCGGCATTGGGGTTCCG-TCAATCGGGGGGG-CTGGGGGTGTGTGCACATGA
520 GAGAACCTGACCGGCGGCATTGGGGTTCCGAT-GATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
14638450 TCTGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAAC
584 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
14638515 TCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
649 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
14638579 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTT
714 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
14638644 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCCA
779 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * * *
14638709 AAAGATTTTAAAAAATCTCAAACTGTAAAAAGTTCCAAAAATCACGAAAAATAGAAAAC
844 AAAAATTTTAAAAAATCTCAAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * *
14638768 AAGTCGTCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14638833 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
14638898 ACGACTTGCCCATCCCGTTTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTC
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CCGCCCGCCCGCTCGTTTC
* * * * * *
14638963 ATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CAAAATCGAGGGTTGCA
195 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTA
** * * * * *
14639027 ATAGCAAGATC-GACAGCATGTAGAGGGGGACCCGACCGATCCACGGCTCGCGCATCCCGCCCCT
259 GCAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * **
14639091 CTGGCCTGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCATA
323 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* ** * ** ** **
14639156 GTCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCTAAGCATA-C--GGGTTATGGCAGCACGC
388 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * *
14639218 GTTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGT
453 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * *
14639283 CAGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGTGGGTGTGCGCACA
518 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCG-GG-GGGTGTGCGCACA
* * * * *
14639348 TGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTCGCTCCCTATCCCTCATAAAACCTTGAG
581 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
14639413 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACA-TG
646 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-AGTG
*
14639477 TCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
710 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
14639542 TTTTTTTGTGCATGCCAACAAATATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTT
775 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
14639607 CCGAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
840 CCAAAAAAATTTTAAAAAATCTC-AAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
14639670 GAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14639735 AAAAATGGCATTGGCATGCAGAAATATTAAGATGTCCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
14639800 ACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCTG--G-CCGCCCGCTCGTTTCA
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
* * * **
14639862 TCGATTGGCTTAGGCATACAGAGTTCATTCCCA-TGCTAAGATCAGACCAGATTGAGGGTTGCGG
196 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACTGAGGGTTGTAG
* * * * ** *
14639926 CAGCAGGATCAGCAGCATGAAGAGGGGGACTCGATCGATCCCCGTTTTGCGCATCCTGCCCCT-T
260 CAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
14639990 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAA
325 -GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
14640055 TCTAAGCATGCGGAGTTCATTCCTAGTCTAGGATCGGACCAGACCAAGGGTTGTGGC--CATGCA
389 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA--CA
* * * * ** **
14640118 TGCTAGGCTCAGGCATGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCA
452 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * * * ** *
14640183 CCGAAGAACCTGACCGGTGGCATCGTGGTTCCGATGATTTGGGGGGCCGAGGGGGGTGTGCACAC
517 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC--GGGGGGTGTGCGCAC
* * * * * *
14640248 ATGATGTACGATGGGTGCTTGTACTTGGACCTTATATTGGCCCCCTAACCCTTATCAAACCTTGA
580 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
14640313 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTG
645 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
14640378 TCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAA
710 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
14640443 TTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTT
775 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** *
14640508 TCAAAAAAATTTTAAAAAATC-CTGAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAG
840 CCAAAAAAATTTTAAAAAATCTC-AAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
14640571 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAC
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
14640636 AAAAATGGCATTGGGATGTAGAAATATGAAGATATGCCTAAACCCACCTAACACACTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** *
14640701 ACGGCTTGCGTGTCCCGTCTCTCTGG-C-TCGTA-T----G-C--CCGCCCGCCCGCTCGTTTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
* * * ** *
14640756 TCAGTTTGGCTTAGGCAATACGGAGTCCATTCCCAGTCTAAGATCAGACCAGACCGTTGGTTGCA
196 TC-GGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTA
* * * * * * *
14640821 GCTGCA-GATCGGCAGCACGCAGAGAGGGACCCGACTGATCCCCGACTTGCGGATCCC-CGCCTT
259 GCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC-CCCT
* *
14640884 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGCGTTGATTTAGGCATACGGAGTTCATT-CCA
323 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
14640948 G--T---C-TA---AG---------A-TC--A-A----ACCGGA-CGAGGGTTACGGTAGCACAT
388 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * *
14640986 GCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGTC-GGGCACCATCGCCAGAGCATCAC
453 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * * * * *
14641049 CGAAGAACTTGACCGACGGTATTGGGGTTCCGATAATCGAGGGGGCCGGGGGGTGTGCGTACATG
518 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
14641114 ATGTG-GAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGA
583 ATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
** * *
14641178 ACTCACACCCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTT
647 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
14641243 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-----T---C-TCGAGTTTTTAGCTGAATT
712 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
14641299 TTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TTCTTCC
777 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * ** * *
14641363 GAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTTTAAAATCGTGACAAATAGAAAAC
842 AAAAAAATTTTAAAAAATCTC-AAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * * *
14641424 GAGCCATCCTGCCATGAAACTTCACTTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
**
14641489 AAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** *
14641554 ACGGCTTATGCATCCCGTC-CATCTGGCCGGCGTAGTGCCCG--T-CCGCCCGCCCGCTCGTTTC
131 ACGGCTTGCGCATCCCGTCTC-TCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTC
* *** *
14641615 TTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AATTGAACCGAGGGTT-TC
195 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGT-
* * *
14641678 AGCAGTAGGATCGGCAGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCT
258 AGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
14641742 CTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
323 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
14641807 GTCTAAGCATATGCAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACAT
388 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * *
14641872 ACTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCCGAGCATCAT
453 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * * * * *
14641937 CGGAGAACCTGATCGGCGGCATCGGGGTTCCGACGATC-GAGGGGCCAGGGGGTGCGCGCACATG
518 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
14642001 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAA
583 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * * *
14642066 CTCACACCCATTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTT
648 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
14642131 GAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTT
713 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
14642196 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-
778 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * ** *
14642260 AAAAAATTTAAAAAAAATCCCAGACCGGAAAAAGTTTTGAAAATCATGACAAATAGAAAAC
843 AAAAAATTT-TAAAAAATCTCA-AACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * *
14642321 GAGCCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
14642386 AAAAATGGCATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * * * * *
14642451 ACGGCTTATGCTTCCCGTCTCTTTGGCCGGCATAGTGCCC-AC--CCGCCCGCCCGCTCGTTTCG
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTC-
** *
14642513 GT-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CAGGACTGAGGGTTGCA
195 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTGTA
* * * * * *
14642576 GCAGTAGCATC-G--G-ACGTAGAGGGGGACCCAACCGATCCCCGGCTTGCCCATCTCGCCCCTC
259 GCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * *
14642637 TGGCCGACTGAGCGCCCGCACGCTTGTTTCGTAGGTTAACATAAGCATACGGAGTTCATTCCCAG
324 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * *
14642702 TCGAAGCATATGGAGTTCATTCGCAGTCTAAGATTGGACCGGATCAAGGGTTGTGACAGCACATG
389 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
14642767 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGCATCGTC
454 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
* * * *
14642832 GGAGAAACTGAACGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
519 GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
14642897 TATGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTGTCCCTCATCAAACCTCGAGAAC
584 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
14642961 TCACATCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
649 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
14643026 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAAGTTT
714 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * * ***
14643091 TTTGTGCATGCCAGCAAAATTACAAGGATTATGTTTACCAAGTTTGGGGCCAAAATTTCTTTTGA
779 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * * * * * * *
14643156 AAACATTTTAAAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAAAAAAT
844 AAAAATTTTAAAAAAT-CTCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* ** * *
14643215 GAGTCATCTTGCCATGAAACTTCACGCAAAGGCTTAAAGGACCATTGTATGGATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
14643280 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTGTCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
14643345 ACGGCTTGCGCATCCCGTCTCTCTGACC-AGCGTAGT-CCTCGCCCGCCCGCCCGCCCGCTCGTT
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCC-CGCCTG-CCGCCCGCCCGCTCGTT
* * *
14643408 TTGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACTGAGGGTTG
193 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTG
* * ** * *
14643472 CAGTAGCATCATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCC
257 TAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
14643537 TCTGGCCGGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA-GGAGATCATTCCC
322 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * *
14643601 AGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCAGACTGAATCGAGGGTTGCGGCAGCACA
387 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* ** * ** * ***
14643666 AGCTAAGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGAGGCACCATTACCGGAGCATCA
452 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * * * * *** *
14643731 CCGGAGAACCTGACTGACGGCATTAGGGTTCCGAAGGTCGAGGGGGTTGGGGGGGTGTGTGCACA
517 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGGGGGCCGGGGGGTGTGCGCACA
* * *
14643796 TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAG
581 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
14643861 AACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
646 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
14643926 CTGGAATAGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
711 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
14643991 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCAT
776 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTT
* * * * *
14644055 CCGAAAAAATTTTAAAAAATCCCGAAC-CACAAAATGTTTCAAAAAACGTGAAAAATAGAAAAC
840 CCAAAAAAATTTTAAAAAATCTCAAACGCA-AAAA-GTTTCAAAAATCATGAAAAATAGAAAAC
* * * * *
14644118 GGGTCATCTTGCCATTAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAG
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * **
14644183 AAAAATGGCATTGGCACGTAGAAATATAAAGATGTAACTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
** * * *
14644248 ACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCAGCC-CACCGGCCCGCTCATTT
131 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGC-CC-GCCCGCTCGTTT
* * * ** *** ** *
14644312 TGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGACCCAGGGTTG-C
194 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTA
* * * * * * ** * *
14644376 GATAGCAGGATC-GACAGCAAGCAGAGCGGGACCCCATCGAACAACGACTTTCGCATCCCGCCCC
259 G-CAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* *
14644440 TCTGGCCGACTGAGCACCCGCACG
322 TCTGGCCGGCTGAGCGCCCGCACG
14644464 ATCGGGCATG
Statistics
Matches: 8752, Mismatches: 1132, Indels: 490
0.84 0.11 0.05
Matches are distributed among these distances:
852 1 0.00
853 188 0.02
854 74 0.01
855 5 0.00
856 1 0.00
857 2 0.00
858 128 0.01
859 34 0.00
860 28 0.00
861 415 0.05
862 38 0.00
863 435 0.05
864 187 0.02
865 338 0.04
866 16 0.00
867 33 0.00
868 12 0.00
869 4 0.00
872 8 0.00
873 73 0.01
874 38 0.00
875 37 0.00
876 85 0.01
877 35 0.00
878 39 0.00
879 1 0.00
880 3 0.00
881 5 0.00
883 5 0.00
884 3 0.00
885 7 0.00
886 41 0.00
887 189 0.02
888 55 0.01
889 72 0.01
890 70 0.01
891 159 0.02
892 3 0.00
893 10 0.00
894 641 0.07
895 182 0.02
896 173 0.02
897 405 0.05
898 396 0.05
899 26 0.00
900 12 0.00
901 803 0.09
902 1352 0.15
903 945 0.11
904 149 0.02
905 146 0.02
906 468 0.05
907 177 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGC
AGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
AAATTTTAAAAAATCTCAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
Found at i:14639184 original size:26 final size:27
Alignment explanation
Indices: 14639131--14639185 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
14639121 CGTGGGTTGA
* *
14639131 CTTAGGCATACGGAGTTCGTTCATAGT
1 CTTAGGCATACGGAGTTCATTCACAGT
*
14639158 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCACAGT
14639184 CT
1 CT
14639186 AAGATCTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCACAGT
Found at i:14640457 original size:901 final size:894
Alignment explanation
Indices: 14638261--14644463 Score: 7522
Period size: 901 Copynumber: 6.9 Consensus size: 894
14638251 GTTGATTTAG
* * * ** * *
14638261 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGA-C-AGGGTTGTGGCAG-ACATGCTAGG
* ** *** * * ** * * * *
14638326 CTCGGGCATGTGCTGCTATCGTGTTTTTCTTTGTCGGCTCACCATCGCCAGAGCACCGCCGGAGA
62 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAGA
* * * * * * *
14638391 ACCTGACCGGCGGCATTGGGGTTCCGTC-AATCGGGGGGGCTGGGGGTGTGTGCACATGATCTGC
127 ACCTGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
14638455 AATGGGTGCCGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
14638520 CCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14638584 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
14638649 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCCAAAAGA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAA
* * * ** ** *
14638714 TTTTAAAAAATCTCAAACTGTAAAAAGTTCCAAAAATCACGAAAAATAGAAAACAAGTCGTCTTG
452 TTTTAAAAAATC-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
14638779 CCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
14638844 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGACTTGCCC
581 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
14638909 ATCCCGTTTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCT
646 ATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * ** *
14638974 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACAAAATCGAGGGTTGCAATAGCAAGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCG
* * * * * * *
14639039 ACAGCATGTAGAGGGGGACCCGACCGATCCACGGCTCGCGCATCCCGCCCCTCTGGCCTGCTGAC
772 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
14639104 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCATAGTCTTA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
14639162 GCATACGGAGTTCATTCCCAGTCTAAGATCTAAGCATAC-GGGTTATGGCAG-CACGCGTTGGGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACAGGGTTGTGGCAGACATGC--TAGGC
* ** * * **
14639225 TCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTC-AGAGA
63 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGA-AGA
*
14639289 ACCTGACCGACGACATTGGGGTTCCGACGA-TCGGGGGGGCCGAGGTGGGTGTGCGCACATGATG
127 ACCTGACCGACGGCATTGGGGTTCCGACGATTC-GGGGGGCCG-GG-GGGTGTGCGCACATGATG
* * * *
14639353 TGCGATGGGTGCTGGTACTTGGCCATTATATTCGCTCCCTATCCCTCATAAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
14639418 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACA-TGTCAGA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-AGTGTCTGA
14639482 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
14639547 TTGTGCATGCCAACAAATATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAA
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAA
* *
14639612 AAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
14639677 CTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
14639742 GCATTGGCATGCAGAAATATTAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
577 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
14639807 GCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCTGGCCGCCCGCTCGTTTCATCGATTGGCT
642 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** *
14639872 TAGGCATACAGAGTTCATTCCCA-TGCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCAGGATC
707 TAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATC
* * * * * ** *
14639936 AGCAGCATGAAGAGGGGGACTCGATCGATCCCCGTTTTGCGCATCCTGCCCCT-TCGGCCGGCTG
771 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTG
* * *
14640000 AGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAATCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14640060 GCATGCGGAGTTCATTCCTAGTCTAGGATCGGACCAGACCAAGGGTTGTGGCCATG-CATGCTAG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGA-C-AGGGTTGTGG-CA-GACATGCTAG
* * * *
14640124 GCTCAGGCATGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGAAG
61 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAG
** * * * * *
14640189 AACCTGACCGGTGGCATCGTGGTTCCGATGATTTGGGGGGCCGAGGGGGGTGTGCACACATGATG
126 AACCTGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCC--GGGGGGTGTGCGCACATGATG
* * * * *
14640254 TACGATGGGTGCTTGTACTTGGACCTTATATTGGCCCCCTAACCCTTATCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
14640319 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14640384 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
14640449 TATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTTCAAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAA
* * * *
14640514 AAATTTTAAAAAATCCTGAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAGGAGTCGTC
449 AAATTTTAAAAAATCC-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
14640579 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
14640644 CATTGGGATGTAGAAATATGAAGATATGCCTAAACCCACCTAACACACTATCGATCCACGGCTTG
578 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
14640709 CGTGTCCCGTCTCTCTGG-C-TCGTA-T----GCCCGCCCGCCCGCTCGTTTCGTCAGTTTGGCT
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGCT
* ** *
14640767 TAGGCAATACGGAGTCCATTCCCAGTCTAAGATCAGACCAGACCGTTGGTTGCAGCTGCA-GATC
707 TAGGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATC
* * * * *
14640831 GGCAGCACGCAGAGAGGGACCCGACTGATCCCCGACTTGCGGATCCC-CGCCTTCTGGCCGGCTG
771 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC-CCCTCTGGCCGGCTG
* *
14640895 AGCGCCCGCACGCTCGTTTCGTGCGTTGATTTAGGCATACGGAGTTCATT-CCAGTCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
14640954 G-AT-C--A----A----A--C------CGGA-C-G--AGGGTTACGGTAGCACATGCTGGGCTC
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACAGGGTTGTGGCAG-ACATGCTAGGCTC
* * *
14640995 GGGCATGTGCTGGTG-CACATTTTTCTTCGTC-GGGCACCATCGCCAGAGCATCACCGAAGAACT
65 GGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAGAACC
* * * *
14641058 TGACCGACGGTATTGGGGTTCCGA-TAATCGAGGGGGCCGGGGGGTGTGCGTACATGATGTG-GA
130 TGACCGACGGCATTGGGGTTCCGACGATTCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCG-
* * *
14641121 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
** * *
14641186 CCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
14641251 GGACACTTTTTTCAAATGGTCACAAAA-----T---C-TCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
14641307 CATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATT-CTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAAT
* * * * * * *
14641371 TTAAAAAAATCTCGAACCGTAAAAAGTTTTTAAAATCGTGACAAATAGAAAACGAGCCATCCTGC
453 TTTAAAAAATC-CGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
14641436 CATGAAACTTCACTTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** **
14641501 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGCA
582 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
14641566 TCCCGTC-CATCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGG
647 TCCCGTCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*** * *
14641630 CATACGGAGTTCATTCCCAGTCTAAGATCA-AATTGAACCGAGGGTTTCAGCAGTAGGATCGGCA
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAGGATCGGCA
* * *
14641694 GCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCAC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
14641758 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
14641813 GCATATGCAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATACTAGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGA-C-AGGGTTGTGGCAG-ACATGCTAGG
** ** * *
14641878 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCC-GAGCATCATCGGAG
62 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG-CCGGAGCATCACCGAAG
* * * * * *
14641942 AACCTGATCGGCGGCATCGGGGTTCCGACGA-TCGAGGGGCCAGGGGGTGCGCGCACATGATGTG
126 AACCTGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14642006 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
** * * *
14642071 ACCCATTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14642136 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
14642201 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAA
* * * * * * * *
14642265 ATTTAAAAAAAATCCCAGACCGGAAAAAGTTTTGAAAATCATGACAAATAGAAAACGAGCCGTCC
451 ATTT-TAAAAAATCCGA-ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
14642330 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
14642395 ATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAT
579 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14642460 GCTTCCCGTCTCTTTGGCCGGCATAGTGCCCACCCGCCCGCCCGCTCGTTTCGGT-GGTTGGCTT
644 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC-GTCGGTTGGCTT
** * * *
14642524 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CAGGACTGAGGGTTGCAGCAGTAGCATC-
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCAGCAGCAGGATCG
* * * * *
14642587 G--G-ACGTAGAGGGGGACCCAACCGATCCCCGGCTTGCCCATCTCGCCCCTCTGGCCGACTGAG
772 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
14642649 CGCCCGCACGCTTGTTTCGTAGGTTAACATAAGCATACGGAGTTCATTCCCAGTCGAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14642707 GCATATGGAGTTCATTCGCAGTCTAAGATTGGACCGGATCAAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGACCAGA-C-AGGGTTGTGGCAG-ACATGCTAGG
* * * * ** *
14642772 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGCATCGTCGGAGA
62 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAGA
* * * * *
14642837 AACTGAACGGCAGCATTGGGGTTCCGACGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGATATG
127 ACCTGACCGACGGCATTGGGGTTCCGACGATTC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
14642901 CGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTGTCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
14642965 ATCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
14643030 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAAGTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * ** *
14643095 TGCATGCCAGCAAAATTACAAGGATTATGTTTACCAAGTTTGGGGCCAAAATTTCTTTTGAAAAC
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAA
* * * *
14643160 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCT-AAAATCGTGAAAAATAAAAAATGAGTCATCT
451 ATTTTAAAAAATCC-GAACCGCAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** * *
14643224 TGCCATGAAACTTCACGCAAAGGCTTAAAGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14643289 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTGTCGATCCACGGCTTGC
579 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14643354 GCATCCCGTCTCTCTGACCAGCGTAGTCCTCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGC
644 GCATCCCGTCTCTCTGGCCGGCGTAG---T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * **
14643419 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACTGAGGGTTGCAGTAGCATCA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGCAGGA
*
14643483 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
769 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
14643548 GAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA-GGAGATCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14643608 GCATACGGAGTTCATTTCCAATCTAAGATCAGA-CTGAATCGAGGGTTGCGGCAGCACAAGCTAA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCAG-A-C-AGGGTTGTGGCAG-ACATGCTAG
* * * * ** *
14643672 GCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGAGGCACCATTACCGGAGCATCACCGGAG
61 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAG
* * * * ** *
14643737 AACCTGACTGACGGCATTAGGGTTCCGAAG-GTCGAGGGGGTTGGGGGGGTGTGTGCACATGATG
126 AACCTGACCGACGGCATTGGGGTTCCGACGATTCG-GGGGG-CCGGGGGGTGTGCGCACATGATG
* *
14643801 TGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
14643866 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
14643931 ATAGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
14643996 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCATCCGAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAA
* * * * * *
14644061 AAATTTTAAAAAATCCCGAACCACAAAATGTTTCAAAAAACGTGAAAAATAGAAAACGGGTCATC
449 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
14644126 TTGCCATTAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** **
14644191 CATTGGCACGTAGAAATATAAAGATGTAACTAAACCCACCTACCACCCTATCGATCCACAACTTG
578 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
14644256 CGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCAGCCCACCGGCCCGCTCATTTTGTCAGTTG
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CGC-CC-GCCCGCTCGTTTCGTCGGTTG
* ** *** * *
14644321 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGACCCAGGGTTGC-GATAGCAGG
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGG
* * * * * * ** * * *
14644385 ATCGACAGCAAGCAGAGCGGGACCCCATCGAACAACGACTTTCGCATCCCGCCCCTCTGGCCGAC
768 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
14644450 TGAGCACCCGCACG
833 TGAGCGCCCGCACG
14644464 ATCGGGCATG
Statistics
Matches: 4604, Mismatches: 573, Indels: 248
0.85 0.11 0.05
Matches are distributed among these distances:
852 1 0.00
853 191 0.04
854 73 0.02
855 5 0.00
856 1 0.00
857 2 0.00
858 129 0.03
859 40 0.01
860 24 0.01
862 1 0.00
863 166 0.04
864 3 0.00
865 56 0.01
866 15 0.00
867 33 0.01
871 1 0.00
872 2 0.00
873 4 0.00
874 1 0.00
879 1 0.00
880 3 0.00
881 1 0.00
882 1 0.00
886 39 0.01
887 188 0.04
888 50 0.01
889 3 0.00
890 1 0.00
892 2 0.00
893 10 0.00
894 648 0.14
895 179 0.04
896 137 0.03
897 295 0.06
898 397 0.09
899 23 0.00
900 10 0.00
901 805 0.17
902 520 0.11
903 540 0.12
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACAGGGTTGTGGCAGACATGCTAGGCTCG
GGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGAAGAACCT
GACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTT
AAAAAATCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14641817 original size:26 final size:26
Alignment explanation
Indices: 14641787--14641839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14641777 GTTGACTTAG
14641787 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGCAGTTCATTCCCAGTCTAA
*
14641813 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATAAGCAGTTCATTCCCAGTCTAA
14641839 G
1 G
14641840 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGCAGTTCATTCCCAGTCTAA
Found at i:14642716 original size:26 final size:26
Alignment explanation
Indices: 14642679--14642729 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14642669 AGGTTAACAT
14642679 AAGCATACGGAGTTCATTCCCAGTCG
1 AAGCATACGGAGTTCATTCCCAGTCG
* *
14642705 AAGCATATGGAGTTCATTCGCAGTC
1 AAGCATACGGAGTTCATTCCCAGTC
14642730 TAAGATTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCG
Found at i:14643622 original size:26 final size:25
Alignment explanation
Indices: 14643583--14643634 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
14643573 GTTGACTTAG
*
14643583 GCATAGGAGATCATTCCCAGTCTAA
1 GCATAGGAGATCATTCCCAATCTAA
* *
14643608 GCATACGGAGTTCATTTCCAATCTAA
1 GCATA-GGAGATCATTCCCAATCTAA
14643634 G
1 G
14643635 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATAGGAGATCATTCCCAATCTAA
Found at i:14644037 original size:903 final size:897
Alignment explanation
Indices: 14640929--14644463 Score: 4642
Period size: 894 Copynumber: 3.9 Consensus size: 897
14640919 GTTGATTTAG
* * * * *
14640929 GCATACGGAGTTCATTCCAGTCTAAGATCAAACCGGA-CGAGGGTTACGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACAAGCTAGGC
* *
14640993 TCGGGCATGTGCTGGTG-CACATTTTTCTTCGTC-GGGCACCATCGCCAGAGCATCACCGAAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
* * * *
14641056 CTTGACCGACGGTATTGGGGTTCCGATA-ATCGAGGGGGCCGGGGGGTGTGCGTACATGATGTG-
131 CCTGACTGACGGCATTGGGGTTCCGA-AGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
14641119 GAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCAC
195 G-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14641184 ACCCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
14641249 GGGGACACTTTTTTCAAATGGTCACAAAA-----T---C-TCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
14641305 TGCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCTTCCGAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCTTCCGAAAAAA
* *
14641370 TTTAAAAAAAT-CTCGAACCGTAAAAAGTTTTTAAAATCGTGACAAATAGAAAACGAGCCATCCT
454 TTTAAAAAAATCCT-GAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGCCATCCT
* *
14641434 GCCATGAAACTTCACTTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14641499 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATG
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
*
14641564 CATCCCGTC-CATCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTCGTTTCT-TCGGTTGGCTT
648 CATCCCGTCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTTGGCTT
** ** * * *
14641627 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGAACCGAGGGTTTCAGCAGTAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACAG-ACCGAGGGTTGCAGCAGCAGCATCGG
* **
14641692 CAGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
14641756 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14641813 GCATATGCAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATA-CTAG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACA-AGCTAG
** * *
14641877 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCC-GAGCATCATCGGA
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CCGGAGCATCACCGGA
* * * * *
14641941 GAACCTGA-TCGGCGGCATCGGGGTTCCGACGATCGA-GGGGCCAGGGGGTGCGCGCACATGATG
128 GAACCTGACT-GACGGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGCGCACATGATG
* *
14642004 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
14642069 ACACCCATTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGAA
257 ACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
14642134 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
14642199 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TTCTTCCGAAA
* * * *
14642263 AAATTTAAAAAAAATCC-CAGACCGGAAAAAGTTT-TGAAAATCATGACAAATAGAAAACGAGCC
451 AAATTT-AAAAAAATCCTGA-ACCGTAAAAAGTTTCT-AAAATCGTGAAAAATAGAAAACGAGCC
* * *
14642326 GTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCCATAAAAA
513 ATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
14642391 TGGCATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
14642456 TTATGCTTCCCGTCTCTTTGGCCGGCATAGTGCCCACCCGCCCGCCCGCTCGTTTCGGT-GGTTG
643 TTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTTG
* * *
14642520 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACAGGACTGAGGGTTGCAGCAGTAGCA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACA-GACCGAGGGTTGCAGCAGCAGCA
* * * *
14642585 TC-G--G-ACGTAGAGGGGGACCCAACCGATCCCCGGCTTGCCCATCTCGCCCCTCTGGCCGACT
772 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * * * * *
14642646 GAGCGCCCGCACGCTTGTTTCGTAGGTTAACATAAGCATACGGAGTTCATTCCCAGTCGAA
837 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * *
14642707 GCATATGGAGTTCATTCGCAGTCTAAGATTGGACCGGATCAAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACAAGCTAGG
* * * * * **
14642772 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * * *
14642837 AACTGAAC-GGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATG
130 ACCTG-ACTGACGGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14642901 CGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTGTCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
14642965 A-TCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 ACCCA-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
14643029 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * **
14643094 GTGCATGCCAGCAAAATTACAAGGATTATGTTTACCAAGTTTGGGGCCAAAATTTCTTTTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TTCTTCCGAAAA
* * * * * *
14643159 CATTTTAAAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAAAAAATGAGTCATCT
452 AATTTAAAAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGCCATCC
** * *
14643224 TGCCATGAAACTTCACGCAAAGGCTTAAAGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14643289 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTGTCGATCCACGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* *
14643354 GCATCCCGTCTCTCTGACCAGCGTAGTCCTCGCCCGCCCGCCCGCCCGCTCGTTT-TGTCGGTTG
647 GCATCCCGTCTCTCTGGCCGGCGTAG---T-GCCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTTG
* * * *
14643418 CCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCAGTAGCATCA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAA-CAGACCGAGGGTTGCAGCAGCAGCA
* *
14643483 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
772 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * *
14643548 GAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA-GGAGATCATTCCCAGTCTAA
837 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14643608 GCATACGGAGTTCATTTCCAATCTAAGATCAGACTGAATCGAGGGTTGCGGCAGCACAAGCTAAG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACAAGCTAGG
* * * **
14643673 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGAGGCACCATTACCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * ** *
14643738 ACCTGACTGACGGCATTAGGGTTCCGAAGGTCGAGGGGGTTGGGGGGGTGTGTGCACATGATGTG
130 ACCTGACTGACGGCATTGGGGTTCCGAAGATCGAGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * *
14643803 CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14643868 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
259 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14643933 AGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
14643998 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCATCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-TCTTCCGAAAAA
* * ** * * * * * *
14644063 ATTTTAAAAAATCCCGAACCACAAAATGTTTCAAAAAACGTGAAAAATAGAAAACGGGTCATCTT
453 ATTTAAAAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGCCATCCT
* * *
14644128 GCCATTAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** ** *
14644193 TTGGCACGTAGAAATATAAAGATGTAACTAAACCCACCTACCACCCTATCGATCCACAACTTGCG
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* * * * *
14644258 CATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCAGCCCACCGGCCCGCTCATTT-TGTCAGTTGG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CGC-CC-GCCCGCTCGTTTCTGTCGGTTGG
* *** * * *
14644322 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGACCCAGGGTTGC-GATAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GAACAGACCGAGGGTTGCAG-CAGCAGCA
* * * * * * ** * *
14644386 TCGACAGCAAGCAGAGCGGGACCCCATCGAACAACGACTTTCGCATCCCGCCCCTCTGGCCGACT
772 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
14644451 GAGCACCCGCACG
837 GAGCACCCGCACG
14644464 ATCGGGCATG
Statistics
Matches: 2313, Mismatches: 279, Indels: 99
0.86 0.10 0.04
Matches are distributed among these distances:
884 14 0.01
885 19 0.01
886 39 0.02
887 188 0.08
888 51 0.02
889 2 0.00
892 1 0.00
893 10 0.00
894 614 0.27
895 68 0.03
896 87 0.04
897 289 0.12
898 91 0.04
899 10 0.00
900 2 0.00
901 152 0.07
902 140 0.06
903 533 0.23
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACAAGCTAGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
CCTGACTGACGGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCTTCCGAAAAAATT
TAAAAAAATCCTGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGCCATCCTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCTGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATTGAACAGACCGAGGGTTGCAGCAGCAGCATCGGCAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14646244 original size:26 final size:26
Alignment explanation
Indices: 14646207--14646259 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14646197 GTTGACTTAG
14646207 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14646233 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
14646259 G
1 G
14646260 AGCGGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14646703 original size:902 final size:897
Alignment explanation
Indices: 14644556--14646972 Score: 3349
Period size: 898 Copynumber: 2.7 Consensus size: 897
14644546 GGTACCATTG
* * *
14644556 CCGGAGAACCTGACCGGTGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACAT
1 CCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACAT
14644621 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
*
14644686 ACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
131 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
14644751 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTGTAGCTGAATT
195 TGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** * * * * *
14644816 TTTTTGTGAATGTGAACAAAAATTCAAGGATCATGTCAACCAAGTCTGTCGCCAAAACTCCTTCC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG-GGCCAAAAATCCTTCC
* * * * *
14644881 CAAGAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
323 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
*
14644946 CGTCTTGCCATGAAACTTCA-TGTGAAGGCTTAAGGGAACATTGTATGAA-ATTACAAGCCATAA
388 CGTCTTGCCATGAAACTTCACT-TGAAGGCTTAAGGGACCATTGTATGAATA-TACAAGCCATAA
* *
14645009 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCAC
451 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
14645074 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CGCCCGCCT-GCCTGCTCATTTTGTC
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-TGCCCTCGCCCGCCTGGCC-GCTCGTTTCGTC
* * *
14645136 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCAGCAG
579 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGCAG
* ** *
14645201 CAGGATCGGCAACACGTAAAGGGAGACCCGGTCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
644 CAGGATCGACAACACACAAAGGGAGACCCGGTCAATCCCCAGCTTACGCATCCCGCCCCTCTGGC
* * * *
14645266 CGGCTAAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTA
709 CGGCTAACCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * * * * *
14645331 AGCATACGGAGTTCTTTCCCATAATAAGATCAGACCCGACCGAGGGTTACGGTAGCACATGGTGG
774 AGCATACGAAGTTCATTCCCATAATAAGAGCAGACCCGACCAAGGGTTACGGCAGCACATGCTAG
* * * *
14645396 GCTCGAACATGTGTTGGTGCCGCATTTTTCTTCACCGGGGAACCATCACCGAGTTATCA
839 GCTCGAACATGTGTTGGTGCCACAATTTTCTTCACCGAGGAACCATCACCGAGTCATCA
* * *
14645455 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGTC--GGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-AGGGGGCCGGGGGGGTGTGCGCACA
* * *
14645518 TGATGTGCGATGGGTGCTGGCACTTGGCCCTTATACTGGCCCCCTCTCCCTCATCAAACCTTGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
*
14645583 AACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGT
130 AACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
14645648 CTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
194 CTGAAA-TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
14645713 TTTTTTGTGCGTGCCAA-AAAACATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAAATCCTT
258 TTTTTTGTGCATGCCAACAAAA-ATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAAATCCTT
*
14645777 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAATGA
321 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
14645842 GTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAA
386 GTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAA
*
14645907 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCAC
451 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
14645972 AGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCCGCTCGCCCGCCTGGCCGCTCGTTTCAT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-TG-CC-CTCGCCCGCCTGGCCGCTCGTTTCGT
* * * *
14646037 CGGTTGGCTTAGGCATACGGAATTGATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGGCA
578 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGCA
* * * * * **
14646102 GTAGGATCGACAGCACACAGAGGGGGA-CCGG-CTGATCCCTGGCTTACGCATCCCGCCCCTCTG
643 GCAGGATCGACAACACACAAAGGGAGACCCGGTC-AATCCCCAGCTTACGCATCCCGCCCCTCTG
** * * * *
14646165 GTTGGCTGACCACCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
707 GCCGGCTAACCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * ** *
14646230 TAAGCATACGAAGTTCATTCTCAGT-CTAAGAGCGGA-TTGAACCAAGGGTTGCGGCAGCACATG
772 TAAGCATACGAAGTTCATTCCCA-TAATAAGAGCAGACCCG-ACCAAGGGTTACGGCAGCACATG
* * * * * *
14646293 CTAGGCTTGAGCATGTGTTGGTGCCACAATTTTCTTCACCGAGGCACCATCGTCGGAG-CATCG
835 CTAGGCTCGAACATGTGTTGGTGCCACAATTTTCTTCACCGAGGAACCATC-ACCGAGTCATCA
* * * * * *
14646356 TCGGAGAACCTGACCGACGGTAATAGGGTTTCGACAATCAGGGGGCCCGGGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGG-CCGGGGGGGTGTGCGCACA
* * ** **
14646421 TGATGTGTGATGGGTGCTGGTACCTGGCCCTTATATTGGGACCCTATCCCTCATCAAACCTCAAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
* * * *
14646486 AACTCATATCTCCTTAAAGAGCATTTGATATTTTACAGGTTTACTGCCAGTAGCCATT-AAGTGT
130 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
14646550 CTGAAATGGGAACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
194 CTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
14646615 TTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTAGGGCCAAAAATCCTTC
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAAATCCTTC
* * *
14646680 CGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
322 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
* * * *
14646745 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTCTATGAATTTACAAGCCATAAA
387 TCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAA
* * * *
14646810 AATGGCATTGGCACA-CGGAAATTTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAT
452 AATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
14646874 GGCTTGCACATCCCGTCTCTCTGGCCGGCGTA-GCGCCT-GCCCGCCCGTCTGCTCGTTTCGTCT
516 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTATGC-CCTCGCCCGCCTGGCCGCTCGTTTCGTCG
14646937 GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
580 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14646973 CATATGGAGC
Statistics
Matches: 1348, Mismatches: 146, Indels: 50
0.87 0.09 0.03
Matches are distributed among these distances:
897 16 0.01
898 499 0.37
899 42 0.03
900 17 0.01
901 216 0.16
902 427 0.32
903 129 0.10
904 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (897 bp):
CCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
ACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATG
GCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTATGCCCTCGCCCGCCTGGCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGCAGCAGGATC
GACAACACACAAAGGGAGACCCGGTCAATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTAA
CCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
GAAGTTCATTCCCATAATAAGAGCAGACCCGACCAAGGGTTACGGCAGCACATGCTAGGCTCGAA
CATGTGTTGGTGCCACAATTTTCTTCACCGAGGAACCATCACCGAGTCATCA
Found at i:14647603 original size:740 final size:740
Alignment explanation
Indices: 14646183--14647717 Score: 2225
Period size: 740 Copynumber: 2.1 Consensus size: 740
14646173 ACCACCCGCA
* * *
14646183 CGCTCGTTTCGT-TGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
1 CGCTCGTTTCGTCT-GTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGAAGCTCA
* * * * * *
14646247 TTCTCAGTCTAAGAGCGGATTGAACCAAGGGTTGCGGCAGCACATGCTAGGCTTGAGCATGTGTT
64 TTCCCAGTCGAAGAGCAGATCGAACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGTT
* ** * * *
14646312 GGTGCCACAATTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGT
129 GGAGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGC
*
14646377 AATAGGGTTTCGACAATCAGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
194 AATAGGGTTCCGACAATCAGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
* * *
14646442 ACCTGGCCCTTATATTGGGACCCTATCCCTCATCAAACCTCAAGAACTCATATCTCCTTAAAGAG
259 ACCTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAG
* *
14646507 CATTTGATATTTTACAGGTTTACTGCCAGTAGCCATTAAGTGTCTGAAATGGGAACACTTTTTTG
324 CATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAGTGTCTGAAATGGGAACACTTTTTTC
*
14646572 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
389 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAA
* * * *
14646637 ATACAAGGATCATGTCTGCCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCC
454 ATACAAGGATCACGTCTACAAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCC
*
14646702 GAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
519 GAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
14646767 GTGAAGGCTTAACGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACGGAAAT
584 GTGAAGGCTTAACGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* * *
14646832 TTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTG
649 ATGAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
*
14646897 GCCGGCGTAGCGCCTGCCCGCCCGT-C
714 GCCGGCGTAGCGCCCGCCCGCCCGTCC
* * *
14646923 TGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGCTCATT
1 CGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGCTCATT
* * * * * *
14646988 CCCAGTCGAAGATCAGATCGGACCGAGGGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGTTGG
66 CCCAGTCGAAGAGCAGATCGAACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGTTGG
*** * ** * ** *
14647053 AGCTGTATTTTTCTTTGCCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGTGGCAT
131 AGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCAA
* * * *
14647118 TAGGGTTCCGACGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
196 TAGGGTTCCGACAATCAGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
* * **
14647183 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC-CTCTTAAAGAGC
261 CTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCTC-CTTAAAGAGC
* *
14647247 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTT
325 ATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATT-AAGTGTCTGA-AATGGGAACACTTTTTT
* *
14647311 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGTGCATGCCAACAAA
388 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAA
* * *
14647376 AATACAAGGATCACGTCTACAAAGTTTTGGG-CAGAAACTCCTTTCAAAAAAATTTTAAAAAATC
453 AATACAAGGATCACGTCTACAAAGTTTAGGGCCA-AAAATCCTTCCAAAAAAATTTTAAAAAATC
* * **
14647440 CCGAACTGCAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
517 CCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * **
14647505 ACGTGAAGGCTTAAGGGACTATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
582 ACGTGAAGGCTTAACGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* *
14647570 ATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
647 ATATGAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC
*
14647635 TGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCC
712 TGGCCGGCGTAGCGCCCGCCCGCCCGT---CC
* *
14647667 CGCTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTTATTCCTAGTCTAAG
1 CGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAG
14647718 ATTGTACCGG
Statistics
Matches: 704, Mismatches: 81, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
738 1 0.00
739 276 0.39
740 378 0.54
741 1 0.00
744 40 0.06
745 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (740 bp):
CGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGCTCATT
CCCAGTCGAAGAGCAGATCGAACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGTTGG
AGCCACAATTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCAA
TAGGGTTCCGACAATCAGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
CTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAGTGTCTGAAATGGGAACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAAT
ACAAGGATCACGTCTACAAAGTTTAGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGA
ACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAACGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
GAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGC
CGGCGTAGCGCCCGCCCGCCCGTCC
Found at i:14647880 original size:26 final size:26
Alignment explanation
Indices: 14647850--14647902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14647840 GTTGTCTTAG
14647850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14647876 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14647902 G
1 G
14647903 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14647966 original size:25 final size:26
Alignment explanation
Indices: 14647930--14647981 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14647920 GTTGACTTAG
14647930 GCATACGAAGTTCATTCC-AGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
14647955 GCATATCG-AGTTCATTCCTAGTCTAA
1 GCATA-CGAAGTTCATTCCTAGTCTAA
14647981 G
1 G
14647982 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:14647978 original size:79 final size:80
Alignment explanation
Indices: 14647838--14647984 Score: 251
Period size: 79 Copynumber: 1.9 Consensus size: 80
14647828 CTCGTTTCGT
* * *
14647838 GGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
14647903 ATCGGACCGGACCGA
66 ATCGGACCGGACCGA
*
14647918 GGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAAGCATATCGAGTTCATTCCTAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
14647982 ATC
66 ATC
14647985 AAATCGGACT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 37 0.59
80 26 0.41
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (80 bp):
GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGA
Found at i:14647993 original size:79 final size:80
Alignment explanation
Indices: 14647838--14648001 Score: 249
Period size: 79 Copynumber: 2.1 Consensus size: 80
14647828 CTCGTTTCGT
* * *
14647838 GGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
**
14647903 ATCGGACCGGACCGA
66 ATCAAACCGGACCGA
*
14647918 GGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAAGCATATCGAGTTCATTCCTAGTCTAAG
1 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
* *
14647982 ATCAAATCGGACTGA
66 ATCAAACCGGACCGA
14647997 GGGTT
1 GGGTT
14648002 ACGGAAGGAC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
79 50 0.66
80 26 0.34
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (80 bp):
GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATCGAGTTCATTCCCAGTCTAAG
ATCAAACCGGACCGA
Found at i:14649767 original size:26 final size:26
Alignment explanation
Indices: 14649731--14649783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14649721 GTTTACTTAG
14649731 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14649757 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14649783 G
1 G
14649784 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14650029 original size:903 final size:904
Alignment explanation
Indices: 14647918--14651545 Score: 4904
Period size: 903 Copynumber: 4.0 Consensus size: 904
14647908 ACCGGACCGA
* *
14647918 GGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAAGCATATC-GAGTTCATTCCTAGTCTAA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCTAA
* * * * * *
14647981 GATCAAATCGGACTGAGGGTTACGGA-AGGACATGTTGGGCTCGCGCATGTGCTGGTGCCGCATT
65 GATCAAACCAGACCGAGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *** * * * *
14648045 TTTCTTCAT-AGGTCACCATCGTTTGAGCATCACCGCAGAACCTGATCGACGGCATTGGGGTTCC
129 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTC
*
14648109 GACGATCGG-GGGG-CCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
194 GACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTT
* * * * * *
14648172 ATATTGGCCCCCTATCCTTTATCAAACCTCGAGAAATCACACCCTCTTAAAGAGCATTTGAGATT
259 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATT
* *
14648237 TTATAGGTTTGCTGCCAGTA-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCAC
324 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
14648301 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGG-T
389 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * * *
14648365 CATGTCTACCATGTTTGGGGCCAAAATTCCTTTCGAAAAAATATAAAAAAATCTCGAACCGCAAA
454 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
* * *
14648430 AAGTTTCAAAAATCGA-GAAAAATAGAAAATGAGTCGTCTTGCCATGAAAGTCCACGTGAAGGCT
519 AAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
14648494 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATG
583 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * * *
14648559 TGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTA
648 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTA
* * * * *
14648624 GTGCTTGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
713 GTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * *
14648689 GTCTAAGATCGGACTAAACCAAGGGTTGCAGTAGCAGGATCGGCAGCACACAAAGGGGGACCCGG
778 GTCTAAGATAGGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGG
* * **
14648754 CCGGTCCCAGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGT
843 CCGATCCCAGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGT
* * * * * * *
14648816 TGGTTTACTTAGGCATACGGAGTTCCTTTCCAAATTTAAGCATATGGAGTTCATTCCCAGTCTAA
1 GGGTTGACTTAGGCATACGGAGTT-CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14648881 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
65 GATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * *
14648946 TTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAAAACCTAACAGACGGCGTTGGGGTTTCG
130 TTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTCG
* * *
14649011 ACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTTGCCCTTG
195 ACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTA
* * * *
14649075 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-ACCCCCCCTAAAGAGCGTTTGAGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT
*
14649139 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACA
325 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
14649204 AAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAAAAAAAATACAAGGATC
390 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * * * * * *
14649269 AGGTCTACCAAGTTTGGGTCCAAAACTACTTTCAAAAAAATTTTAAAAATTCTCGGATCGCACAA
455 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* ** *
14649334 TGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACGTAAAGGCTTA
520 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
14649399 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTG
585 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * * * *
14649464 GCTAAACCCACCTACCACCATATTGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
650 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGT
** *
14649529 GCTCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGT
715 GCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
14649594 CTAAGATAGGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGGCCCGACC
780 CTAAGATAGGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGCC
* * ** * * *
14649659 AATCCTAGGCTTGAGCATCTTGCCCTTCTGGCTGGCTGAGTGCTCGCACGTTCGTTTCGT
845 GATCCCAGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGT
* * *
14649719 TGGTTTACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCC-GATCTAA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAA
** * * *
14649783 GATCGGACCAGACCGAGGGTTACGATAGCACATGCTGGG-TCGGGCATGTACAGGTGCCGCATTT
65 GATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* ** * ** *
14649847 TTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCGTTGGGGTTTCG
130 TTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTCG
* * *
14649912 ACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTG
195 ACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTA
* *
14649977 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACACCCTTAAAGAGCATTTGGGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT
*
14650042 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACA
325 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
14650107 AAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTCTTGTGCATGCCAAAAAAAATTCAAGGATC
390 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* *
14650172 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTCGAACCGAAAAA
455 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
* ** *
14650237 AATTTCAAAAATTGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
520 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
14650302 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACACAGAAATATGAAGATGTG
585 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* *
14650367 CCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTATGGCCGCCGTAGT
650 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGT
* * * * *
14650432 GCCCGCCCGCCCACCCGCCCGCTCGTTACATCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGT
715 GCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
14650497 CTAAGATCA-GACTGGACCGAGGGTTGCAGCAGCCA-GATCGACAGCATGCAGAGGGGGACCTGG
780 CTAAGAT-AGGACCGAACCGAGGGTTGCAGCAG-CAGGATCGGCAGCACGCAAAGGGGGACCCGG
* * * * * * * * *
14650560 TCGATCCCCGGCTTGTA-CGTCCCGCCCTTTTGGTCGGCTAAGTGCCCGCACGCTCGTTCCGT
843 CCGATCCCAGGCTTG-AGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGT
14650622 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
14650687 ATCGAACTAGACAGAGGGTTACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTT
66 ATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *
14650752 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGG-TCCGG
131 TCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTC-G
**
14650816 A-GATC-G-GGGG--GGCTGGG-G-G-G----TG-TG--CGATGGGTGCTGGTACTTGGCCCTTA
195 ACGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTA
** * *
14650866 TATTGGCTGCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT
*
14650931 TACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
325 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
14650996 AAAACTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATC
390 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * ** * * *
14651061 ACATGTACAAAGTTTGGGGAAAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAA
455 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA
** * *
14651126 AGTTTCAAAAATTGTGAAAAATAGAAAAAGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTA
520 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
14651191 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
585 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * * * *
14651256 CCTAAACCCACCCACCACCCTATCGATCCACGTCTTGCGCATCCCGTCTCTATGGCCGGCGAAAT
650 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGT
* *
14651321 GCT----CGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
715 GCTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * *
14651382 CTAAGATCGAACCCG-ACTGAGGGCTGCGGTAGAAGGATCGGCAGCACGCAAAGGTGGACCCGGT
780 CTAAGATAGGA-CCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGC
* * * *
14651446 CGATCCCCA-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-TCCGCACGATCGTTTCAT
844 CGAT-CCCAGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGTGCT-CGCACGCTCGTTTCGT
14651507 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14651546 ATCGGACCAG
Statistics
Matches: 2428, Mismatches: 277, Indels: 63
0.88 0.10 0.02
Matches are distributed among these distances:
884 1 0.00
885 180 0.07
886 5 0.00
889 446 0.18
891 2 0.00
892 2 0.00
896 1 0.00
897 1 0.00
898 22 0.01
899 9 0.00
900 90 0.04
901 190 0.08
902 340 0.14
903 1058 0.44
904 81 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTTCGA
CGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGACGTAGTG
CTCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATAGGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGCCG
ATCCCAGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGT
Found at i:14650663 original size:26 final size:26
Alignment explanation
Indices: 14650634--14650686 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14650624 GTTGACTTAG
14650634 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14650660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14650686 G
1 G
14650687 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14653824 original size:26 final size:26
Alignment explanation
Indices: 14653794--14653843 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14653784 TTTGACTTAG
14653794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14653820 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14653844 CAGATCGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14655114 original size:863 final size:861
Alignment explanation
Indices: 14652896--14655809 Score: 3082
Period size: 892 Copynumber: 3.3 Consensus size: 861
14652886 GAGTAGTGCC
* * *
14652896 CGCCCGC-TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 CGCCCGCAT-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * * ** * *
14652960 ACCAGACCTAA-GGTTGC-A-ATTGCAGATGCTGGGCTCAAGCATGTGTTGGTGTCGCATTTTTC
65 ACTGGACCAAAGGGTTGCGACAAT--ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * * * * *
14653022 TTCACCGGGGCACCATCGCCGGGGCATCACCGGAGAACCTGACCGGGGGCATTGGGGTTCCGATG
128 TTC-TTGGGGCACCATCGTCGGAGCATC-CCTGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * * *
14653087 ATCGGAGGGGCC-GGGGGGTGTGCACAAATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATAT
191 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
*
14653151 TGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
256 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
14653216 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
321 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
14653281 TCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
386 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACG
* * * *
14653346 TCTACCAAGTTTGGGGCTAAAACGCCTTCCCAAAAAATTTTAAAAAATCCCGATCCGTAAAAAGT
450 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGT
14653411 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
514 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
14653476 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAG-TGTGCCT
579 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* ** * *
14653540 AAACCCACCTATCACCGACT-TCTCTTTCCACGGCTTGCACATCCCGTCTCTCTGGTCGACGTAG
644 AAACCCACC--T-ACC-ACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
** *
14653604 TGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACAGGA
705 TGCCCGCCCGCTCATTTCCTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACAGAA
* *
14653669 CAGACCGAGGGTTACGAGAGCAAGATCGACAGAACGTGAAAGGGGACCCGACCAATCCTCGACTT
770 CAGACCGAGGGTTACGACAGCAAGATCGACAGAACGAGAAAGGGGACCCGACCAATCCTC-ACTT
* *
14653734 ATGCATCCCGCCCCTCCGGCTGGCTGAG
834 ATGCATCCCGCCCCTCCGGCCGACTGAG
* * * *
14653762 CGCCCGCACGCTCATTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* ** *
14653827 GAGTTCATTCCCAGTCTCAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGAC
63 G-G---------A----C---T-GGACCA-A---AGGGTTGCGACAATACATGCTGGGCTCGGGC
* * *
14653892 ATGTGCTGGTGCTGCATTTTTCTT-TGTCGGGGCACCATCATCGGAGCATCACTAGAGAACCTGA
106 ATGTGCTGGTGCCGCATTTTTCTTCT-T-GGGGCACCATCGTCGGAGCATCCCT-GAGAACCTGA
* * *
14653956 CCGACGACATTGGGGTTCCGACGAT-GGGGGGG-TGGAGGGGGTGTGCGCACATGATGTGTGATG
168 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGTGATG
*
14654019 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
232 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
14654084 CTTGAGGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTGTGAAATGGGGA
297 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
14654149 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTCATGCAT
362 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-ATGCAT
* * **
14654214 GCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTT
426 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
14654279 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
491 AAAAAATCCCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
14654344 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGC
555 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * *
14654409 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGTGCATCT
620 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCC
* * * *
14654474 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGTTCGTTTCCTTGGTTGGCTTAGGCATACGGAGTTC
685 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCATTTCCTCGGTTGGCTTAGGCATACGAAGTTC
** * * * * *
14654539 ATTCCTGGTCTAAGATCA-AACCAGACCGAGGGTTACGACAGCAGGATTGGCAGCACGCAG-ATG
750 ATTCCCAGTCTAAGA-CAGAA-CAGACCGAGGGTTACGACAGCAAGATCGACAGAACG-AGAAAG
* * * *
14654602 GGGACCC-ACCCGATCC-C-CTGT-TGCGATCCTGTCCCTCTGGCCGACTGAG
812 GGGACCCGA-CCAATCCTCACT-TATGC-ATCCCGCCCCTCCGGCCGACTGAG
* * *
14654651 CGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
14654716 CTGGACC-AAGGGTTGCGACAATACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTC
66 CTGGACCAAAGGGTTGCGACAATACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * *
14654780 TTAAGGCACCATCGTAGGAGCATCGCCTGAGAACCTAACCGGCGGCATTGGGGTTTCGACGATCG
131 TTGGGGCACCATCGTCGGAGCATC-CCTGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
*
14654845 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGC
195 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
14654910 CCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTCAGATTTTAGAGGT
260 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
14654975 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTT
325 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
14655040 TTACACTTCGAGTTTTTAGCTGAACTTTTTTATGCATGCCAACAAAACTACAAGGATCACGTCTA
390 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
14655105 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CC--A--G---AA----C--
454 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTCAA
* *
14655156 --A--A-G------A-AAAACGAGTCGTCTTGCTATGAAACTTTACGTGAAGGCTTAAGGGACCA
519 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
14655209 TTGTATCAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAAGATGAAGATGTGCCTAAACC
584 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
** * *
14655274 CACCTACCAC-CATATCGATCCACGGCTTGCGCATCCCGTCTCTCTCACCGGCATAGTGCCCGCC
649 CACCTACCACTC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC
* * *
14655338 CGCCCGCCTGCCCGCTCGTGTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
709 CGCCCG-CT---C-AT--T-TCCTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-
* * * * * ** ** * * * * * * * *
14655403 TACACCAAACCAAGGGTTGTGGTAGCAGGACCAACAGCATGCAG-AGGGGGACCCGACCGATCCC
765 CAGAACAGACCGAGGGTTACGACAGCAAGATCGACAGAACG-AGAAAGGGGACCCGACCAATCCT
* ** * * *
14655467 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
829 C-ACTTATGCATCCCGCCCCTCCGGCCGACTGAG
* * * * * *
14655501 CAG-TCGCACGCTCGTTTCGCGGGTTGAGTTAGGCATATGGAGTTCATTCCCAATCTAAGCATAC
1 C-GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C
* * * ** * *
14655565 GAAGTTCATTCCCAGTCTCAAATTGGACCGGACCGAGGATTAC-AGCAGCACATGTTGGGCTTGG
63 G--G---------A----C----TGGACC--A--AAGGGTTGCGA-CAATACATGCTGGGCTCGG
** * ** *
14655629 GCATGTGCTGGTGTTGCATTTTTCTT-TGTCGTGGCACCATCGTCGGAGCATTGTCAGAGAACCT
104 GCATGTGCTGGTGCCGCATTTTTCTTCT-T-GGGGCACCATCGTCGGAGCA-TCCCTGAGAACCT
* **
14655693 GACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGAGGGGTGTGCGCACATGATGTGCA
166 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGGTGTGCGCACATGATGTGTG
*
14655758 ATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATAAAACCTC
229 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
14655810 AAATTAAGAT
Statistics
Matches: 1742, Mismatches: 206, Indels: 188
0.82 0.10 0.09
Matches are distributed among these distances:
835 1 0.00
836 153 0.09
837 1 0.00
840 9 0.01
841 1 0.00
843 1 0.00
844 2 0.00
845 1 0.00
846 1 0.00
847 1 0.00
848 86 0.05
849 3 0.00
850 70 0.04
851 7 0.00
852 2 0.00
854 3 0.00
858 1 0.00
860 1 0.00
862 51 0.03
863 329 0.19
864 9 0.01
866 53 0.03
867 3 0.00
868 6 0.00
869 1 0.00
870 1 0.00
871 6 0.00
872 1 0.00
875 2 0.00
876 45 0.03
877 60 0.03
878 39 0.02
879 37 0.02
883 1 0.00
885 1 0.00
886 1 0.00
887 5 0.00
888 8 0.00
889 75 0.04
890 95 0.05
891 64 0.04
892 488 0.28
893 16 0.01
894 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (861 bp):
CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CTGGACCAAAGGGTTGCGACAATACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
TTGGGGCACCATCGTCGGAGCATCCCTGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
TCATTTCCTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACAGAACAGACCGAGGG
TTACGACAGCAAGATCGACAGAACGAGAAAGGGGACCCGACCAATCCTCACTTATGCATCCCGCC
CCTCCGGCCGACTGAG
Found at i:14657895 original size:26 final size:26
Alignment explanation
Indices: 14657859--14657908 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14657849 GTTGAGTTAG
*
14657859 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14657885 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14657909 CAAATTGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14658236 original size:26 final size:28
Alignment explanation
Indices: 14658176--14658233 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
14658166 CCCTATCGAT
14658176 CCACGGCTTGCGCATCCTATCTCTCAGG
1 CCACGGCTTGCGCATCCTATCTCTCAGG
14658204 CCACGGCTTGCGCATCCTATCTCTCAGG
1 CCACGGCTTGCGCATCCTATCTCTCAGG
14658232 CC
1 CC
14658234 GGCGTAGTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.41, G:0.21, T:0.24
Consensus pattern (28 bp):
CCACGGCTTGCGCATCCTATCTCTCAGG
Found at i:14658478 original size:25 final size:26
Alignment explanation
Indices: 14658444--14658495 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14658434 GTTGACTTAG
*
14658444 GCATACGGAGTTCATTCCCA-TCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
14658469 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
14658495 G
1 G
14658496 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:14659358 original size:26 final size:26
Alignment explanation
Indices: 14659319--14659371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14659309 GTTGACTTAG
* *
14659319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14659345 GCATACAGATTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14659371 G
1 G
14659372 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14661126 original size:26 final size:26
Alignment explanation
Indices: 14661090--14661142 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14661080 GTTGACTTAG
*
14661090 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14661116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14661142 G
1 G
14661143 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14662538 original size:26 final size:26
Alignment explanation
Indices: 14662502--14662555 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14662492 TAGCAGGATC
* *
14662502 AGCATACGGAGTTCATTTCTAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
14662528 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
14662554 AG
1 AG
14662556 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:14663416 original size:26 final size:26
Alignment explanation
Indices: 14663387--14663439 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14663377 GTTGGCTTAG
*
14663387 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14663413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14663439 G
1 G
14663440 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14665110 original size:876 final size:864
Alignment explanation
Indices: 14663413--14665339 Score: 2756
Period size: 876 Copynumber: 2.2 Consensus size: 864
14663403 TCCAGTCTAA
* * * *
14663413 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGCGACAGCCAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCCAGATCGGCA
* * * * *
14663478 ACACGCAGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCAGCTGAACGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-
* *
14663543 CCGCACAT--TCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
130 CC-CACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
14663606 CAGACTGAGGTTTGCTACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGT
194 CAGACTAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGC
* * * ** * * *
14663671 CGGGGTACCATCACCGTAGCTTCGTCGGAGAACTTGACCGGAGGCATTGGGGTTCCGATGATTGG
259 CGGGGCACCATCACCGGAGCATCACCGGAGAACTTGACCGGAGGCATTAGGGTTCCGACGATCGG
*
14663736 GGGGCCGGGGGGTGTGCGTACATGATGTGGAATGGGTGCTAGTACTTGGCTCTTATATTGGCCCC
324 GGGGCCGGGGGGTGTGCGTACATGATGTGGAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
*
14663801 CTATCCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
389 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
14663866 CTTCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAACTCTTGTA
454 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** * **
14663931 CATTTCGAGTTTTTAGGTAAATTTTTTTGTGGATTCCAACAAAAATACAAGGATCACGTCTACCT
519 CATTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACAA
* * *
14663996 AGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAA
584 AGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGGTTCAAAA
* * *
14664061 ATTATGAAAAATAGAAAACGAGTCATCTTACCGTGAAACTTCACGTGAAGGCTTAAGGGACCACT
649 ATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGAACCACT
*
14664126 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACACA
714 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACACA
* * * *
14664191 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCATAGTGCCCGCCCG
779 CCTACCACCATAGCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGA-CATAGTGCCCGCCCG
*
14664255 CCTGCCCGCCCGTTTATTTCGTGGGTTGGCTTAG
843 -CT-------CG----TTTCGTCGGTTGGCTTAG
* * * * *
14664289 GCATATGGAGTTCATTCCAAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCCAGATCGGCA
* * * * * *
14664354 GCATGCAGAGAGGGACCCGGCCAATCCCCGGCTTGCGCGTCTCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
14664419 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCA
131 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* **
14664484 GACTAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
196 GACTAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCG
* * * * *
14664549 GGGCACCATCGCTGGAGCATCACCGGAGAACTTGACTGGCA-GCTTTAGGGTTCCGGCGATCGGG
261 GGGCACCATCACCGGAGCATCACCGGAGAACTTGACCGG-AGGCATTAGGGTTCCGACGATCGGG
*
14664613 GGG-CGTGGGGTGTGCGTACATGATGTGGAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
325 GGGCCGGGGGGTGTGCGTACATGATGTGGAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
14664677 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
390 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
14664742 TGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
455 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
14664807 ACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACAA
520 A-TTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACAA
* *
14664871 AGTTTGGGGCCAAAACT-TCTTCCAAAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGGTTCG
584 AGTTTGGGGCCAAAACTCT-TTCC-AAAAAAATTTTAAAAAATCTC-AAACCGTAAAAAGGTTCA
* * *
14664934 ACAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACC
646 AAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGAACC
* * ** *
14664999 ATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAGATATGAAGATGTGCCTAAAC
711 ACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* *
14665064 CCACCTACCACCATAGCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
776 ACACCTACCACCATAGCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGACATAGTGCCCGCC
14665129 CGCTCGTTTCGTCGGTTGGCTTAG
841 CGCTCGTTTCGTCGGTTGGCTTAG
* * *
14665153 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGCCGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCCAGATCGGCA
** * * *
14665218 GCACGCAGAGGGGGAATCGACCGATCCTCGGATTACGCATCCCGCCCCTCTGGCCGGCT-AGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * *
14665282 CTGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGAT
131 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
14665340 TGGACCGAAT
Statistics
Matches: 937, Mismatches: 106, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
863 57 0.06
864 122 0.13
868 2 0.00
874 6 0.01
875 261 0.28
876 487 0.52
877 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCCAGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACTAAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCG
GGGCACCATCACCGGAGCATCACCGGAGAACTTGACCGGAGGCATTAGGGTTCCGACGATCGGGG
GGCCGGGGGGTGTGCGTACATGATGTGGAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
TTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACAAAG
TTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGGTTCAAAAAT
CATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGAACCACTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACACACC
TACCACCATAGCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAG
Found at i:14665371 original size:158 final size:158
Alignment explanation
Indices: 14665080--14665496 Score: 537
Period size: 158 Copynumber: 2.6 Consensus size: 158
14665070 ACCACCATAG
** * * * ** *
14665080 CGATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGT
1 CGATCCACGGCTTACGCATCCCGCCCCTCTGGCCGGC-TAGCGCCCGCAAGCTCGTTTCGTGGGT
* * * *
14665145 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGCCG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCAG
*
14665210 GATCGACAGCACGCAGAGGGGGAATCGAC
130 GATCGACAGCACGCAGAGGGGGAACCGAC
* * * *
14665239 CGATCCTCGGATTACGCATCCCGCCCCTCTGGCCGGCTAGCGCCTGCAAGCTCGTTTCATGGGTT
1 CGATCCACGGCTTACGCATCCCGCCCCTCTGGCCGGCTAGCGCCCGCAAGCTCGTTTCGTGGGTT
* * * *
14665304 GACTTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGACCGAATCGAGGGTTATGGTAGCAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCAGG
* *
14665369 ATCGACAGCATGCAGAGGGGGACCCGAC
131 ATCGACAGCACGCAGAGGGGGAACCGAC
* * ** * * *
14665397 CGATCCCCGCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACATGCTCGTTTCGTGGGT
1 CGATCCACGGCTTACGCATCCCGCCCCTCTGGCCGGCT-AGCGCCCGCAAGCTCGTTTCGTGGGT
*
14665462 TGACATAGGCATACGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14665497 CATACGGAGT
Statistics
Matches: 222, Mismatches: 35, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
158 137 0.62
159 85 0.38
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (158 bp):
CGATCCACGGCTTACGCATCCCGCCCCTCTGGCCGGCTAGCGCCCGCAAGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCAGG
ATCGACAGCACGCAGAGGGGGAACCGAC
Found at i:14665522 original size:26 final size:26
Alignment explanation
Indices: 14665470--14665522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14665460 GTTGACATAG
* *
14665470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
14665496 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
14665522 G
1 G
14665523 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:14666375 original size:26 final size:26
Alignment explanation
Indices: 14666338--14666390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14666328 GTTGACTTAG
*
14666338 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14666364 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14666390 G
1 G
14666391 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:14668003 original size:399 final size:388
Alignment explanation
Indices: 14667273--14668053 Score: 1154
Period size: 399 Copynumber: 2.0 Consensus size: 388
14667263 CAGAGTTCAT
* * * * *
14667273 TCCCAGTCCAAGATCGGACTGGACCGAGGGTTTCGATAGCACATGTTGGGCTCGGGCATGTGCTG
1 TCCCAGTCCAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTG
* *** *
14667338 GTACCACATTTTTCTTCGTCGGGGCACCATTGTCGAAGCATCGTTGGAGAACCTGACCGGCGGCA
66 GTACCACATTTTTCTTCGTCGAGGCACCATCACCGAAGCATCGCTGGAGAACCTGACCGGCGGCA
* * *
14667403 TCGGGGTTACGACGATCGGGGGGTTTACGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
131 TCGGGGTTACGACAATCGGGGGGTGTACGCAAATGATGTGCGATGGGTGCTGGTACTTGCCCCTT
14667468 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
196 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
14667533 TTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCAG
261 TTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
14667598 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACAA
326 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAACAA
* * * *
14667662 TCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGTT
1 TCCCAGTCCAAGATCGGACT-AGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCT
* **
14667726 GGTGCCGTATTTTTCTTCGTCGAGGCACCATCACC-AGAGCATCGCTGGAGAACCTGACCGGCGG
65 GGTACCACATTTTTCTTCGTCGAGGCACCATCACCGA-AGCATCGCTGGAGAACCTGACCGGCGG
* * ** *
14667790 CATTGGGGTTCCGACAATCGGGCGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGG
129 CATCGGGGTTACGACAAT---------C-GGGGGGTGTACGCAAATGATGTGCGATGGGTGCTGG
14667855 TACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
184 TACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
14667920 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
249 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
14667985 GT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAACAA
314 -TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAA
14668049 AAATA
378 AAATA
14668054 AAAGGATCAC
Statistics
Matches: 350, Mismatches: 29, Indels: 17
0.88 0.07 0.04
Matches are distributed among these distances:
388 2 0.01
389 122 0.35
398 19 0.05
399 206 0.59
400 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (388 bp):
TCCCAGTCCAAGATCGGACTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTG
GTACCACATTTTTCTTCGTCGAGGCACCATCACCGAAGCATCGCTGGAGAACCTGACCGGCGGCA
TCGGGGTTACGACAATCGGGGGGTGTACGCAAATGATGTGCGATGGGTGCTGGTACTTGCCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAACAA
Found at i:14671002 original size:26 final size:26
Alignment explanation
Indices: 14670966--14671018 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14670956 GTTGACTTAG
14670966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14670992 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14671018 G
1 G
14671019 ATTAGAGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14671954 original size:19 final size:19
Alignment explanation
Indices: 14671930--14671973 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
14671920 AAAGTGTTTG
14671930 AAATGGGGACACTTTTTTC
1 AAATGGGGACACTTTTTTC
14671949 AAATGGGGACACTTTTTTC
1 AAATGGGGACACTTTTTTC
14671968 AAATGG
1 AAATGG
14671974 TCACAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (19 bp):
AAATGGGGACACTTTTTTC
Found at i:14672541 original size:26 final size:26
Alignment explanation
Indices: 14672505--14672557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14672495 GTTGACTTAG
**
14672505 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14672531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14672557 G
1 G
14672558 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14674470 original size:862 final size:861
Alignment explanation
Indices: 14671949--14677554 Score: 4328
Period size: 895 Copynumber: 6.3 Consensus size: 861
14671939 CACTTTTTTC
* **
14671949 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAAATTTTAGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** *
14672014 TTTGTACATGCCAACAAAAATACAA-GATCATGTCTATGAAGTTTGGGGCCAAAACTCCTTCTGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** *
14672078 AAAAATTTGAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
14672143 TGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAT
196 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
*
14672208 GGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
261 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
14672273 TGCACATCCCGTCT-TTCTGGCCGACGTAGTGCCCGCCCCCCCGTCCGC-CCGCTCGTTTCGTCG
326 CGCGCATCCCGTCTCTT-TGGCCGACGTAGTGCCCG-CCCGCCG-CC-CTCCACTCGTTTCGTCG
** * * * *
14672336 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAAC
387 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGC
* * * * * * *
14672401 AGGATC-AGCAGCATGCAAAGGGGGACCCGGCTGATCCCTGGCTTACGCATCCCGCCCCTCTGGT
452 AGGATCGA-CAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGC
* * * * * **
14672465 TGGCTGAACGCCC-CAACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCT
514 CGGCTGAGCACCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
14672529 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTG
578 AAG-AT-C-G-G---A----C---C-------GGAT-----CGA-GGTTGTGACAGCACATGCTG
* ** * *
14672594 GGCT-TGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGCCGG
616 GGCTCAG-GCATGTGCTGGTGCCGCATTTTTC-T--TC---G---C--C-GCGGAGCATCGCCAG
* * * ** *
14672658 AGAACCTGACCGGCAGTATTGGGGTTTAGACGAACGGGGGGGCCGGGGGGGTGTGCGCACATGAT
668 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
14672723 GTGTGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACT
733 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * *
14672788 CACACCACCTTAAAAAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTG
798 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
14672852 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGTTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * **
14672917 TTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTTTGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * *
14672982 AAAAATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
14673047 TCTTGCCACGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
196 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
**
14673112 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
261 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
14673177 TGCGCAT-CCGTCTCTTTGGACGGCGTAGTGCCCACCCGCCGTACCTGCCGCT-GTTTCAAATCG
326 CGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCG-CCCT-CCACTCGTTTC--GTCG
* * ** * *
14673240 ATTGGCTTAGGCAATACGGAGTTCATT-CCAGTCTAAGCTCAAGACCGAACATAGGGTTTC-GTA
387 GTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACCGAGGGTTGCGGCA
* * * * ** *
14673303 GCAGGATCCACCA-CAACCGCAGAGAGGGACCCGCCAATCCCCGGCTTGCGCATTTCGCCTTCTG
450 GCAGGATCGA-CAGC-A-CGCAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCTCTG
* ** * *
14673367 GCTTGGCTGCAGC-GTCGCA-GCTC-TTCCGTGAGTTG-CTTAGGCATAC-GAGTTCATTCCCAG
512 GC-CGGCTG-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
14673427 TCTATAGATCGGACCGGACCGAGGTTTGTG-GAGCACATG-TGGGCCCAGGCATGTGTTGGGTGC
575 TCTA-AGATCGGACCGGATCGAGG-TTGTGACAGCACATGCTGGGCTCAGGCATGTGCT-GGTG-
* * * * ** *
14673490 CGCGCTTTTCTTCATCGAGGACCACTGTTTAGAGCACCATCAGGAGAACCTGA-TG-CTGGCACA
636 C-CGCATTT-TTCTTC---G-CCGC-G----GAGCATCGCCA-GAGAACCTGACCGAC-GG--CA
* * * *
14673553 TT-AGGTTCCGACGATCGGGTGGACC--CGGGG-G-G-G-----G-TGTG-GATGGGTGCTGGGT
686 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT-GGT
* * *
14673605 ACTT-G-CCTTAT-TTGGCCTCCCTATCCATCATCAAACCTCGAGACCTCACACCCCCTTAAAGA
750 ACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
*
14673667 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
814 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
14673715 AAATGGGG-CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAAGTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
14673779 TTTGTGCATGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
14673844 AAAAATTAAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCG
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
14673909 TCTTGCCATGAAACTTCATGTGAAAGCTTGAGGGACCGTTGTATGAATTTACAAGCCATTAAAAT
196 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
14673974 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
261 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
14674039 CGCACATCCCGTCTCTTTGGCCGACGTAGTACCCACCCGCCTGCCCTCCCACTCGCTTCGTCGGT
326 CGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCC-GCCCT-CCACTCGTTTCGTCGGT
* * * * *
14674104 TGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAG
389 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAG
* ** * * *
14674169 CATCGGTAGCATGCAGATGGGGACCTAGCCGATCCCCAGCTTGCGCATCCCGTCCCTCTGGCCGG
454 GATCGACAGCACGCAGAGGGGGACC-AGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGG
* * * *
14674234 TTGAGCACCCGCACGCTCATTTTGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
517 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
14674299 TCGGACCGGATCGAGTGTTGAGACAGCATATGCTAGGCTCAGGCATGTGTTGGTGTCGCATTTTT
582 TCGGACCGGATCGAG-GTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
*
14674364 CTTCGCCG-GG-GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGC
646 CTTCGCCGCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
14674427 CGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCGCTA
711 CGG-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
14674492 TCCCTGATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTA
775 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
14674557 CCAGTAGCCATTAATGTGTCTG
840 CCAGTAGCCATTAAAGTGTCTG
* *
14674579 AAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
14674644 TTTGTGCATGCCAACAAAAAAACACGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * * *
14674709 AAAAATTTTTAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT-AGTTAAAAATAGAAAACGAGTC
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTC
* * * * **
14674773 GTCTTGTCATGAAACTTCACGTGAAGGCTT-AGGCATACAGAGTTCATTCCCAGTCTCAGATCGG
195 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG------GA--CCATT----GTATGA-AT-TT
* *** * ** ** * **
14674837 ACGAAACTCAGGGTTACGGTGGCA--GG-ATCAGTAGCACATAGTGGGGGACCTGACCGATCCCC
246 AC-AAGC-CA---TTAAAATGGCATTGGCAT--GTAG-AAATA-T-GAAGATGTG-CCTAAACCC
** ** *** * ** * * * * * * * * * *
14674899 GGCTTGCA-AAAATTTGA-AGATGTGCCTAAACCCACCTACCATC-CTATCGATCCATGGCTTA-
300 ACCTACCACCCTA-TCGATCCACG-G-CT---CGCGCATCCCGTCTCT-TTG-GCC--GACGTAG
* ** * ** ** * ** *** * ** * * * *
14674960 TGCATC-CCATCTCTCTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGTCTACTCGTTTCGACAATT
355 TGC-CCGCCCGC-CGC-CCTCCAC-TCGT-TTCG-TCGGTTG-GC-T-TAGGC-ATACG-GAGTT
** ** * ** * ** * * * * * * *
14675024 GGC-TTAGGCA-TACGGAGTTCATTCCTAGTCTAAGATTAGACTGG-ACCAAGGGTTG-CGGCA-
409 --CATT-CCCAGT-CTAAGATCAGACCGAACCGAGGGTT-G-C-GGCAGC-AGGATCGACAGCAC
* ** * * ***** **
14675084 GTAGGATCGGTAGCA--CGCAAAGGGGGACAAG-GCCGATCCCCAGCTTACGCATCCCGCCCCTC
466 GCA-GAGGGGGACCAGCCG-ATCCCCGG-CTTGCG-C-ATCC---------------CG-CCCTC
* * * * *
14675146 TGGCCGACTGAGCACCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTTATTCCCAG
510 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
***
14675211 TCTAAGCATACAGAGTCAATTCCCAGTCTAAGATTGGATCGGATCAAGTGTTGTGGTTGCACATG
575 TCTAAG-AT-C-G-G---A----C---C-------GGATC-G----AG-GTTGTGACAGCACATG
* ** * *
14675276 CTGGGCTCGGGCATGTGCTGGTATCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACC
613 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC-T--TC---G---C--CG-CGGAGCATCGCC
* * * * *
14675341 GGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGTGGCCAGGGGGGTGTGCGCACATG
666 AGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * ** *
14675406 ATGT-TCGATGCGTGCTGGTACTTGGCACTTATATTGGCCCCCTATTTCTCATCAAACCTCGAGA
731 ATGTGT-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
14675470 ACTCAC-CACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAATGT
795 ACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
14675534 ATG
859 CTG
* * *
14675537 AAAAGGGGAAACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
14675601 TTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
14675666 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAATAATAGAAAACGAGTCG
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
14675731 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
196 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
* *
14675796 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCT
261 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
14675861 TGCGCATCCCGTCTCTCTGGCCGACTTAGGGCCTGCCCGCC-CCGC-CCACTCGTTTCGTCGGTT
326 CGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCGCC-CTCCACTCGTTTCGTCGGTT
* * * *
14675924 GGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGTATCGAGGGTTACGGCAGCAGG
390 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGG
* ** * * * * * *
14675989 ATCGACAGCTCATATAAGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCACCCCTCTGGGCGGC
455 ATCGACAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGC
*
14676054 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTGTAAGCA
518 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA--GT---C-
* * * * **
14676119 TACAAAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAAGGTTGGGGCAGCACATTTTGGGCTC
577 T---AAG---A-T--C-----------GGACCGGATCG-AGGTTGTGACAGCACATGCTGGGCTC
* *
14676184 -GAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATGGTCC-GAGAA
621 AG-GCATGTGCTGGTGCCGCATTTTTCTT---C---G---C--CG-CGGAGCATCG-CCAGAGAA
* * * * *
14676247 CCTGACCGACGGCATTGGGGTTTCGACGATCGTGGGGG-C-TGGGGATGTGCGCACATGATGTGC
672 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
* * *
14676310 GATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
737 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
14676375 CCCCCTTAAAGAGCTTTTAAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTTTCTG
802 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * **
14676435 AAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTTTTAGAGGAATTTT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
14676500 TTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACACCTTTCGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
14676565 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCC
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
14676630 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATCAATTTGCAAGCCA-TAAATA
196 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAA-A
** ** *
14676694 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCCAAGGC
260 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** *
14676759 TTC-CGCATCTCATCT-TTCTGGCCGACGTAGTGCCCGCCCGCTCG---TTCGTTCATTTCGTCG
325 -TCGCGCATCCCGTCTCTT-TGGCCGACGTAGTGCCCGCCCGC-CGCCCTCCACTCGTTTCGTCG
* * *
14676819 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGC
387 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGC
* * * * *
14676884 AGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCCCATGCCGCCACTCT---C
452 AGGATCGACAGCACGCAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCC
** ** *
14676946 GTTTGAGTGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCGCAGTCTAA
515 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T--
* * * *
14677011 GCACACAAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGCGATAGCACATGCTGGG
570 -C-C-C--AG-----------TCTAAGATCGGACCGGATCG-AGGTTGTGACAGCACATGCTGGG
* ** * * * *
14677076 CT-TGAGCATGTGCTGGTGCCATATTTTTTTTACCGGGGCACCATCGTTGGAGCATCGTCGGAGA
618 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTT--C---G---C--CG-CGGAGCATCGCCAGAGA
* * * *
14677140 ACTTGATCGACGGCATTGGGGTTCCGACGATCGTGGGGGCTGGGGGGGTGTGCGCACATGATGTG
671 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
14677205 CGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
736 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
14677269 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTTTCTG
801 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
14677330 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
1 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
14677395 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCCAAACTCCTTCCGA
66 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** *
14677460 AAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCA
131 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
14677525 TCTTGCCATCAAACTTCACGTGAAGGCTTA
196 TCTTGCCATGAAACTTCACGTGAAGGCTTA
14677555 GGCATACGGA
Statistics
Matches: 3801, Mismatches: 627, Indels: 558
0.76 0.13 0.11
Matches are distributed among these distances:
849 4 0.00
850 29 0.01
851 9 0.00
852 2 0.00
853 4 0.00
854 1 0.00
855 1 0.00
856 2 0.00
858 2 0.00
859 1 0.00
860 14 0.00
861 58 0.02
862 365 0.10
863 160 0.04
864 146 0.04
865 238 0.06
866 17 0.00
870 3 0.00
871 3 0.00
872 4 0.00
873 2 0.00
874 18 0.00
875 29 0.01
876 39 0.01
877 9 0.00
878 5 0.00
879 3 0.00
880 4 0.00
881 5 0.00
882 4 0.00
883 12 0.00
884 1 0.00
885 8 0.00
886 14 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 11 0.00
891 3 0.00
892 8 0.00
893 10 0.00
894 65 0.02
895 398 0.10
896 51 0.01
897 7 0.00
898 273 0.07
899 306 0.08
900 170 0.04
901 31 0.01
902 47 0.01
903 127 0.03
904 284 0.07
905 69 0.02
906 15 0.00
907 1 0.00
908 3 0.00
909 4 0.00
910 1 0.00
911 2 0.00
912 5 0.00
913 1 0.00
914 7 0.00
915 16 0.00
916 7 0.00
917 21 0.01
918 5 0.00
919 74 0.02
920 5 0.00
921 4 0.00
922 3 0.00
923 3 0.00
924 4 0.00
925 2 0.00
926 4 0.00
927 2 0.00
928 1 0.00
929 6 0.00
930 6 0.00
931 2 0.00
932 8 0.00
933 3 0.00
935 2 0.00
936 14 0.00
937 8 0.00
938 1 0.00
939 11 0.00
940 8 0.00
941 3 0.00
942 4 0.00
943 3 0.00
944 2 0.00
945 45 0.01
946 5 0.00
948 2 0.00
950 4 0.00
951 1 0.00
952 2 0.00
954 1 0.00
956 2 0.00
957 183 0.05
958 155 0.04
959 49 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (861 bp):
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
CGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCGCCCTCCACTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGA
TCGACAGCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGA
GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGATCGAGGTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG
CCGCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTG
Found at i:14676126 original size:26 final size:26
Alignment explanation
Indices: 14676090--14676142 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14676080 GTTGACTTAG
*
14676090 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATTCCCAGTGTAA
14676116 GCATACAAAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATTCCCAGTGTAA
14676142 G
1 G
14676143 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTGTAA
Found at i:14677745 original size:26 final size:26
Alignment explanation
Indices: 14677715--14677767 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14677705 GTTGACTTAG
14677715 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
** *
14677741 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
14677767 G
1 G
14677768 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:14679009 original size:26 final size:26
Alignment explanation
Indices: 14678958--14679010 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14678948 CCAGTTCGAT
* *
14678958 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14678984 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14679010 C
1 C
14679011 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14679360 original size:159 final size:159
Alignment explanation
Indices: 14678984--14679352 Score: 528
Period size: 159 Copynumber: 2.3 Consensus size: 159
14678974 ACTTCGTATG
* *
14678984 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
14679049 CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCTTCTGCGTGTTACTGATCC
66 CGGCCAGAGGAGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCATCTGCGTGTTACTGATCC
*
14679114 TGCTACCACAACCCTCGGTCCAGTCCGAT
131 TGCTACCACAACCCTCGGTCCACTCCGAT
* * *
14679143 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * *
14679208 CGGCCAGAGTAGCGGGATGCGTAAG-TCGGGGATCGGTCGGGTCCCCATCTGCGTGCTGT-C-GA
66 CGGCCAGAGGAGCGGGATGCGCAAGCT-AGGGATCGGTCGGGTCCCCATCTGCGTG-T-TACTGA
* * **
14679270 TCTTGTTACCGTAACCCTCGGTCCACTCCGAT
128 TCCTGCTACCACAACCCTCGGTCCACTCCGAT
* **
14679302 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
14679353 GGTGGGTGGA
Statistics
Matches: 186, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
158 1 0.01
159 182 0.98
160 2 0.01
161 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGAGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCATCTGCGTGTTACTGATCC
TGCTACCACAACCCTCGGTCCACTCCGAT
Found at i:14680045 original size:26 final size:26
Alignment explanation
Indices: 14680016--14680068 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14680006 CTGGTCCGAT
* *
14680016 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
14680042 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
14680068 C
1 C
14680069 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14680955 original size:26 final size:26
Alignment explanation
Indices: 14680919--14680969 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14680909 GGTCTGATCT
* *
14680919 TAGACTGGGAATGAACTCCTTATGCG
1 TAGACAGGGAATGAACTCCATATGCG
14680945 TAGACAGGGAATGAACTCCATATGC
1 TAGACAGGGAATGAACTCCATATGC
14680970 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCATATGCG
Found at i:14681109 original size:901 final size:898
Alignment explanation
Indices: 14679145--14682007 Score: 3797
Period size: 899 Copynumber: 3.2 Consensus size: 898
14679135 AGTCCGATCT
* *
14679145 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
* * * * * *
14679210 GCCAGAGTAGCGGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCATCTGCGTGCTGTCGATCTTG
66 GCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTA
* * *
14679275 TTACCGTAACCCTCGGTCC-ACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 CTACCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
14679339 TGATGAAAC--GAGCGGGTGGGTGGATGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCG
195 TGACGAAACGAGAGCGGGCGGGCGG-GGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCG
* * ** *
14679402 TGGATCAATAAGGTGGTAGGTGGGTTTAGGGACATCTTCATATTT-TGGTGTGTCAATGCCATTT
259 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTT
* * * * *
14679466 TAATGGGTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * * * * *
14679531 TCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGG
388 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAAATTTTTTAG
* ** *
14679596 AAGGTGTTTTGGTGCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAA
* * *
14679661 ATTCAGCCAAAAACTCTAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* ** * * *
14679726 ACACTTTAATGGTTACTCACAACAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * ** *
14679791 TTCGAGGTTTGATGAGGGATAGGCAGCCAATAT-AAGAGCCAAGTATCAGC-CCCAATCGCACAT
647 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAG-GCCAAGTACCAGCACCC-ATCGCACAT
* * * * *
14679854 CATGTGCGCACACCCGCC-GGCCCTCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCG
710 CATGTGCGCACACCC-CCTGACCCCCCCGATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
14679918 GGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCGAG
773 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCAAG
* * * *
14679983 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
838 CATGTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCG
* * *
14680044 TAGACTGGGAATGAAATCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
* * ** *
14680109 GCCATAGGGGTAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTA
66 GCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTA
** * ** * *
14680174 CTACCGCAACCCTC-AGTTTGGTTTGATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
131 CTACCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
14680238 CGACGAAACGAGCATGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
195 TGACGAAACGAG-A-GCGGGCGGGCGGG-GGGCACTATGCCGACCAGAGAGACGGGATGCGCAAG
14680303 CTGTGGATCAATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 C-GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
14680367 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
14680432 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGACTTTTTAAAAATTTTTT
386 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAAATTTTTT
* * *
14680497 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAG
451 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
14680562 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTATCCCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14680627 AACACTTTAATGGCTGCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14680692 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATC
646 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATC
*
14680757 ATGTGCGCACACCCCCTGACCCCCCCGATCGCGGAACCCCAATGCCACCGGTCAGGTTCTCCGAC
711 ATGTGCGCACACCCCCTGACCCCCCCGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
14680822 GATGCTCCGACGATGGTGCCCTGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCAAGCAT
776 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCAAGCAT
* * *
14680887 GTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCG
841 GTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCG
* **
14680945 TAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
* * * * * *
14681010 GCCAGAGGAGCGGGATGTGTAAGCCGAGGATCGGCCGGGTCCCCCTCTTCATGCTATCGATCCTA
66 GCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTA
* *
14681075 CTATCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
131 CTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
** * * *
14681140 GACGAAACGA-A-CGGGCGACCAGGGGGGCATTATGCCGACCGGAGAGACGGGATGCGCAAGCCA
196 GACGAAACGAGAGCGGGCGGGC-GGGGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAG-CG
* * *
14681203 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTT
259 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
14681268 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14681333 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGACTTTTT-AAAATTTTTTCGA
389 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAAATTTTTTAG-
*
14681397 AAGGAGTTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAA
* * *
14681462 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCTCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14681527 ACACTTTAATGGCTATTGGCAGCAAACCTAAAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
14681592 GTCTAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
647 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
14681657 TGTGCGCATACCCCCT-AGCCCCCCCGATCATCGAAACCCTAATGCTGCTGGTCAAGTTCTCCGA
712 TGTGCGCACACCCCCTGA-CCCCCCCGATC-GCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * ** * * *
14681721 CGATGCTACGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCTAACCCCAGCT
775 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCAAGCA
14681786 TGTGCTACCACAACCCTCGGTCT-G---G---TT---C-------G-A-T-C---T-C-
840 TGTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCG
* * * * *
14681820 -AGACTGGGAATGAACTCCATATGGCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
* * * * * * *
14681884 GCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTACGTGTTGTCGATCCTG
66 GCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTA
* * * * * *
14681949 CTGCCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAG
131 CTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
14682008 TTAACCCACG
Statistics
Matches: 1738, Mismatches: 206, Indels: 65
0.87 0.10 0.03
Matches are distributed among these distances:
874 163 0.09
876 1 0.00
877 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
890 1 0.00
893 2 0.00
896 1 0.00
897 69 0.04
898 213 0.12
899 385 0.22
900 102 0.06
901 320 0.18
902 216 0.12
903 238 0.14
904 22 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCG
GCCAGAGGAGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTA
CTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
GACGAAACGAGAGCGGGCGGGCGGGGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCGTG
GATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAAATTTTTTAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCTGACCCCCCCGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
TCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCAAGCATGTGCT
ACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCG
Found at i:14682155 original size:152 final size:155
Alignment explanation
Indices: 14681788--14682178 Score: 396
Period size: 159 Copynumber: 2.5 Consensus size: 155
14681778 CCCCAGCTTG
* * * * * * * *
14681788 TGCTACCACAACCCTCGGTCTGGTTCGATCTCAGACTGGGAATGAACTCCATATGGCTAAGTCAA
1 TGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * **
14681853 CCCATGAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGG
66 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGAACGGGAT-CGC-AG-C-GGGATCGG
* * * *
14681918 CCAGGTCCCCCTCTACGTGTTGTCGATCC
127 CCAGGTCCCCATCTACGTGCTGCCAATCC
* * * * *
14681947 TGCTGCCACAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTTAA
1 TGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
*
14682012 CCCACGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGAACGGGAT-GC-G-GGGATCGGTCC-
66 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGAACGGGATCGCAGCGGGATCGG-CCA
* **
14682073 GGTCTCCATCTGTGTGCTGCCAATCC
130 GGTCCCCATCTACGTGCTGCCAATCC
* ** * *
14682099 TGCTATCGTAACCCTCGATCC-ACTCCTATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTACCACAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
** *
14682163 ACTGATGAAACGAGCG
65 ACCCACGAAACGAGCG
14682179 GACAGGCGGG
Statistics
Matches: 195, Mismatches: 35, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
151 1 0.01
152 91 0.47
153 2 0.01
155 1 0.01
157 2 0.01
159 98 0.50
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (155 bp):
TGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGAACGGGATCGCAGCGGGATCGGCCAG
GTCCCCATCTACGTGCTGCCAATCC
Found at i:14682879 original size:26 final size:26
Alignment explanation
Indices: 14682843--14682895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14682833 CCGATCCGAT
*
14682843 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14682869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14682895 C
1 C
14682896 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14684479 original size:26 final size:26
Alignment explanation
Indices: 14684443--14684493 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14684433 GGTCTGATCA
14684443 TAGACTGGGAATGAA-TTCCGTATGCT
1 TAGACTGGGAATGAACTT-CGTATGCT
14684469 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
14684494 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:14686260 original size:26 final size:26
Alignment explanation
Indices: 14686231--14686283 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14686221 CCGATCCGAT
14686231 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14686257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14686283 C
1 C
14686284 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14686818 original size:883 final size:881
Alignment explanation
Indices: 14683712--14695159 Score: 12430
Period size: 883 Copynumber: 12.9 Consensus size: 881
14683702 GTACTGCCGT
* * * * * * *
14683712 AACCCTCGGTATGGTCCAATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACTGATGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
14683777 C-GAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAG
66 CAGAGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * **
14683841 GTGGTAGGTGGGTTCAGGCATATCTTCATATTTCTGCATGCCAATATCATTTTTATGGCTTGTAA
127 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
14683906 ATTCATACAATGGTCCCATAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
192 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
14683971 TTCATGATTTTTGAAACTTTTTGCGCTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
257 TTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
14684036 CCTAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAC
322 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
14684101 TTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCT
387 TTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* ** *
14684166 ACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGGTTGATG
452 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
14684231 AGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACCCC
517 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * * *
14684295 CTCGGCCCCCTAATCACCGGAACCCTAGTGCCG-TCGGTCAGGTTCTCCGGCGACGCTCCGACGA
582 C-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * *
14684359 TGGTGGCCCGGCAAAGAAAAATGCGGCACTAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
645 TGGT-GCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
** * * * *
14684424 CCTCGGTTTGGTCTGATCATAGACTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTTCG
709 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
14684489 TATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCGC
774 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* *
14684554 AAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCAC
839 AAGCC---G---GA---GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * *
14684606 AACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACCGACAAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
14684671 CTAGCGGGCGGGCGGGTGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
66 C-A------GAGC----GGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
14684736 GGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATTCCAATGCCATTTTT
116 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
14684801 ATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTC
181 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
14684866 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTC-GA
246 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGA
* * * * *
14684930 AGCAGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAACT
310 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
14684995 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCAATTTCAGAC
375 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
14685060 ACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTATGGGTTCT
440 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
14685125 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCACACATCGTG
505 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
14685190 TGCGCACACCACCCGGCCCGGCCAATCGTCGTAACCTCAATGCCACCGGTCAGGTTCTCCGGCGA
570 TGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGA
* * * *
14685255 TGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGT
634 TGCTCCGACGATGGTG-CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
14685320 GCTACCGTAACCCTCGGTCTGGTCCGGTCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
698 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
14685385 AATGAACTCTGTATTCCTAAGTCAACCTACGAAACGAGCGTGTGGACGCTCAGCCGGCCAGAGGG
763 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** * * ** * **
14685450 GCGAGATGCGCAAGCCGG-GGAT-CGAC-C-GGGTCCCCCTCTG-T-GTGCTACCAT
828 GCGGGATGCGCAAGCCGGAGG-TCCCCCTCTGCGTGCTGC-C-GATCCTGCTACCGC
* * * * * *
14685501 AACCCT-TGATCCGGTCTGACCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
1 AACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
14685565 AC-GAGCGGGCGGGCAGGCACTACGCCGGCCAGCGAGGCGGGATGCGCAAGCCGTGGATTCGATA
65 ACAGAGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATA
* *
14685629 GGGTGGAAGGTGGGTTTA-GAACATCTTCAATATTT-TGCATGCCAATGCCATTTTTATGGCTTG
125 GGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
14685692 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
189 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
14685757 TTTTTCACGATTGTT-GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTT
254 TTTTTCACGATT-TTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
14685821 AGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAA
318 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
14685885 AAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAAT
383 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
14685950 GGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
448 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
14686015 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA
513 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
14686080 CCCCCCCCGTCCCCCCGATCACCGGAACCCTAATGCCGCTGGTCAAGTTCTCCGGTGATGCTCCG
578 --CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCG
* ** * * * *
14686145 ACGATGGTGTCCCAGTGAAGAAAAATATGGCACCAGCACATGCTCGAGCCTAGAATGTGCTGCCA
641 ACGATGGTG-CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
14686210 CAACCCTCGGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
705 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ** * * *
14686275 TCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTAGGTCGGAGGGGCGAGAT
770 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * *
14686340 GCGCAAGCC-GA-GTCCCCCTCTGCGTACTGTCGATCCTGCTACTGC
835 GCGCAAGCCGGAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* **** * * * * *
14686385 AACCCTCAGCCCAAACCGATCTTACACTAGGAATAAACTCCGTATGCCTAAGCCAACTGATGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * ** *
14686450 CA-AGCGGGCGGGCACTAAGTCGGCCAGAGAGGCGGGATAAGCAAGCCGTAGATCGATAGGGTGG
66 CAGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * *
14686514 TAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
131 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * **
14686579 ATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCAATTTCTATTTTTCA
196 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
14686644 TGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
261 CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
14686709 AACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTT
326 AACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
* *
14686774 ATAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTAC
390 A-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
14686839 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
454 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
14686904 GGATAGGGTGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
519 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * ** * * * * *
14686968 TGCCCCCCAATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCTGATGATGGT
584 GGCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* ** * * * *
14687033 GCCCTAACGAAGAAAAATATGACACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCGTC
649 GCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
14687098 GGTCCGGTTCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
713 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * ** *
14687163 CCTAAGTTAACCCACGAAACGAGCGTGCGGTCGCTCAGCTAGCCAGAGGGGCGGGATGCACAAGC
778 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
14687228 CGGGGATCGACTGGGTTCCCCTCTGTGTGCTGCCGATCCTGCTGCCAC
843 C---G---GA---GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * * * * *
14687276 AACCCTCGGTCTAGCCCGATCTTATACCGAGAATGAACTCCGTATGCCTAACCCAACCTACGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * ** * *
14687341 TGAGCGGACGGGCAGGTGGGCACTGTGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGAT
66 -CAG-AG-CGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
14687406 AGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTGCTTG
124 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
14687471 TAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
189 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
14687536 TTTTTCACGATTTTTGAAACTTTTTACGGTTTGGAACTTTTTTAAAATTCTTTCGGAAGGAGTTT
254 TTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
14687601 TGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAA
318 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
14687666 AAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAATGTGTCCGCATTTCAGACACTCTAAT
383 AAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
14687730 GGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTT
448 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
14687795 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACA
513 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
14687860 CCCCCCCGGCCCCCCCGATCGTCGGAACCCCACTGCTGCCGGTCAGGTTCTCTGGCGATGCTCCG
578 -CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCG
* * * * * ** * *
14687925 GCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGGAAATGCCCGAGCGTAGCTTGTGCTACCG
641 ACGATGGTG-CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
14687990 TAACCTTCGGTCTGGTCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGAAC
705 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
14688055 TCAGTATGCCTAAGTCAACCAACAAAACGAGCATACAGGCGCTCAGCCGGCCAGAGGGGCGGGAT
770 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * *
14688120 GCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCTGATCCTGCTGCCAC
835 GCGCAAGCC--GGA-------GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * *
14688176 AACCCTCATTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
14688241 C-GAGCTGACGAGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
66 CAGAGC-G--G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
14688305 GTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
127 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
14688370 ATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTGTATTT
192 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * ** *
14688435 TTCATGATTTTCAAAACTTTTTTCGGTTTGGGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGC
257 TTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
14688500 TCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAC
322 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
** *
14688565 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
387 TTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
14688630 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATG
452 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
14688695 AGGGATAAGGGGCCAATATAAGAGCCAAGTACCAGCATCCATCGCACATCATGTGTGCACACCCC
517 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
14688760 CC-GCCCCCTCGATCGCCAGAAACCCAATGCCACCGGTCAGG---T-------T-CTCCGACGAT
582 CCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * * *
14688813 GGTGCGCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCCGCAACC
646 GGTGC-CCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
*
14688878 CTCAGTCCGGTCCGATCTTAGACT-GG---GAA-----TA-----A-AC------T----T-CGT
710 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
14688917 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACA
775 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * *
14688982 AGCCGGGGATCGGTCGGGTCCCCTTCTGCATGCTACCGATCCTGCGACCGTAACC
840 AGCC--GGA--GGTC----CCCC-TCTGCGTGCTGCCGATCCTGCTACCG----C
* *
14689037 ATCAGTCCAGTCCTACTGTCACAACCCTCGGTCCGGTCTAATCTTAGACAGGGAATGAACTCCGT
1 A--A---C---CCT-CAGT-------CT-GGTCC-G----ATCTTAGACTGGGAATGAACTCCGT
* *
14689102 ATTCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGACCAGAGAGACGG
44 ATGCCTAAGCCAACCGACGAAAC-A------GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
*
14689167 GATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
102 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
14689232 CCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTCCACGTGAAGTTTCA
167 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * *
14689297 TGGCAAGACGACTCGTTTTGTATTTTTCATGATTTTTGAAGCTTTTTTCGGTTTGGGATTTTTTA
232 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTA
* *
14689362 AAATTTTTTTGAAAGGAGTTTTGG--CC---C--------C----T--TT-TATTTTTGTTGGCA
297 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
14689407 TGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGT
362 TGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
14689471 CCCCATTTCAGACACTTTAATGGCT-CATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
427 CCCCATTTCAGACACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
14689535 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
491 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
14689600 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAA-CCCATTGTCACTGGTC
556 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCTGGTC
* * * *
14689664 AGGTTCTCCGACGATGCTCCAACGATGGTGCACC-GACGAAGAAAAATGCGACACCAACACATGC
620 AGGTTCTCCGGCGATGCTCCGACGATGGTGC-CCAG-CGAAGAAAAATGCGGCACCAGCACATGC
* * * * * *
14689728 CTGAGACAAGCATGTGTTGTCACAACCCTCGGTCC-G---G----T---C------TG-A-T-C-
683 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
14689772 ----C-TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGTGTGCT
748 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
14689832 CAGCCGGCCAGAAGGGTGGGGTGCGCAAGTCAAGGATCGATTGGGTCCCCCTCTGCATGCTGTCG
813 CAGCCGGCCAGAGGGGCGGGATGCGCAAG-C--CG---GA---GGTCCCCCTCTGCGTGCTGCCG
14689897 ATCCTGCTACCGC
869 ATCCTGCTACCGC
** * *
14689910 AACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTACGCCAACTGACGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA
* *
14689975 CGAGCGGGAGGGAGGGCGGGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCACGCCGTGG
65 --A-C---A--GA--GC--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * **
14690040 ATCAATAGGGTCGTAGGTGGGATTAGTCACATCTTCATATTTCTGCGGGCCAATGCCATTTTTAT
118 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
14690105 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTCACGTGATGTTTCATGGCAAGACGACTCG
183 GGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
14690170 TTTTTTATTTTTCATGATATTT-GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
247 TTTTCTATTTTTCACGAT-TTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
14690234 CGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATT
311 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
14690298 CAGCTAAAAA-TTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAAAT
376 CAGCTAAAAACTT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14690362 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
440 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** *
14690427 CGAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACTTCATG
505 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * ***
14690492 TGCGCACA-CCCCCGACCCTCCCGATCTCCGGAACCTCAAAGTCG-TCAGTCAGGTTCTCCAATG
570 TGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCG
** * *
14690555 ATGCTCCGGTGATGGTGCCCCAGAGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
633 ATGCTCCGACGATGGTG-CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
14690620 TGCTACTGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACAGG
697 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * * *
14690685 GAATGAACTCCATATGCATAAGTCAAACCACAAAACAAGTGTGCGGGTGCTCAGCCGGCCAAAGG
762 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * **
14690750 GGCGGGATGCGCAAGCCAAGGATCGGCTGGGTCCCCCTCTACGTGCTACCGATCCTACTATCTT
827 GGCGGGATGCGCAAGCC--GGA-------GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * *
14690814 AA-CCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
14690878 CGAGTGGGTGGGCGAGCAGGCGGGCACTATGCCGGCCAAAGAGATGGGATGCACAAGCCGTGGAT
66 C-A----------GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
**
14690943 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
120 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
14691008 TTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
185 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * *
14691073 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTAAGGATTTTTTAAAATTTTTTTGGAAGGTG
250 TCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
14691138 TTTTGGGCCCAAACATGGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGC
315 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
14691203 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTT
380 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14691268 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGG
445 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
14691333 ATTGACGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGC
510 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
14691398 TCACCCCTCCGGCCCCCCCGATCGCCGGAACCCCACTGCCACCGATCAGGTTCTCCGACGATGCT
575 ACACCCC-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCT
* * * * * *
14691463 CC-AGCGATGGTGCCTCGGTGAAGAAAAATGCGACACCAACACATGCTCGAGCCTAGCATGTGCT
638 CCGA-CGATGGTGCC-CAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
14691527 GTCGTAACCCTCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAAT
701 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * *
14691592 GAACTCCGTATGCCTAAGTCGACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
766 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * *
14691657 GCATGCGCAAGCCGG-GGATCGGCCGGGTCTCGCTCTGCATGCTGCCGATCCTACTGCCGC
831 GGATGCGCAAGCCGGAGG-T---CC----C-C-CTCTGCGTGCTGCCGATCCTGCTACCGC
** * * *
14691717 AACCCTTGGTTTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
1 AACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
14691782 ACGAGCGGGCGGGCGGGCACCACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATTGATAGG
65 AC-A--GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
** *
14691847 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGTTTGTAA
127 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
14691912 ATTCAT-CAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-T
192 ATTCATAC-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * **
14691975 TTTCACGATTTTTGGAAACTTTTTACAGTTCAGGATTTTTTTAAATTTTTTCGGAAACCA-TTTT
256 TTTCACGA-TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG-AAGGAGTTTT
** * * *
14692039 ACCCCCAAACATGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAA
319 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
14692104 AACTCGAAGTGTACAA-ATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATG
384 AACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
14692168 GCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTG
449 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
14692233 ATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATCTGCGCACAC
514 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * * **
14692298 CCCCCGGCCCTTCGATCGTCGGAACCTCAATGCCG-TCGGTCAGGTTCCCCGATGATGCTCCGAC
579 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGAC
* * * * * *
14692362 GATGGTGCCTC-GATGAAGAGAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCGGTCAC
643 GATGGTGCC-CAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * ** *
14692426 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAATT
706 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
14692491 CCGTATGCCTAAGTCAACCCACGAAACGAGGGTACGGGCGCTCAGCCAGCTAGAGGGGCGAGATG
771 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * **
14692556 CGTAAGCCGGGGATCCACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCTA
836 CGCAAGCC--GG----A---GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
* * * * *
14692611 AACCCTTAGTCCGATCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGGAA
1 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA
* * *
14692676 CGAGGCGGGCAGGTGGGGGGGTGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAA
65 --A------CA-----------GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ***
14692741 GCCGTGGATCGATAGGGGGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCA
111 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14692806 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG-AAGAT
176 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
14692870 GACTCGTTTTCTATTTTTGACGATTTTCAAAACCTTTTACGGTTCAGGG-TTTTTTAAAATTTTT
241 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTC-GGGATTTTTTAAAATTTTT
* *
14692934 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTGTTGGCATGCATAAA
305 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14692998 AAAATTCAGCTAAAAACCTGTAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACT
370 AAAATTCAGCTAAAAACTTG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14693062 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTG
434 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14693127 AGTTCAT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
499 AGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
14693191 CATCATGTGCGCACACCCCTCGACCCCCCGATCGCCGGCACCCCAATGCCG-TCGGTCAAGTTCT
563 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCT-GGTCAGGTTCT
* * * *
14693255 CCGGCGATGCTCCCG-CAATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCC
627 CCGGCGATGCT-CCGACGATGGTGCCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
14693319 CAGCATGTGCTGCCGCAA-CC-C--T-C-G---G----T--A-T--G-AT---CT--G-AT-CTC
690 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
14693358 AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATC-AAACAAGCATGCGGGCGCTCAGTCG
755 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
14693422 GCCAGAGGGGCGGGATGCGTAAGCCGGGGACCGACCGAATCCCCTTCTGCATGCTACCGATCCTG
819 GCCAGAGGGGCGGGATGCGCAAGCC--GGA--G---G--TCCCCCTCTGCGTGCTGCCGATCCTG
* * *
14693487 TTGCCGT
875 CTACCGC
* * * * *
14693494 AACCC-CCGATTTGGTCTGATCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
14693558 ATGAGTGGGTGGGCAGGCGGGTTGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCTG
65 A-CA--------G-A-GC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14693623 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTTTGCATGCCAATGCCATTTT
115 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
14693688 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACT
180 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
14693753 CGTTTTCTATTTTTCACGATTTTTC-AAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCGG
245 CGTTTTCTATTTTTCACGA-TTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
14693817 AAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAGA
309 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA
* **
14693882 ATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
373 ATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14693947 ACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTT
438 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14694012 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCA
503 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * * *
14694077 TGTGCGCACACCCCTCCGGCCCCCTTTATCGCTGGAGCCCCAAT---GCT-ATC-GG---T-CAG
568 TGTGCGCACACCCC-CCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGG
* * **
14694133 -G-TTCTCCGACGA---T----------GAAAAATGCGACACCAGCACATGCCCGAGCGTAGCAT
631 CGATGCTCCGACGATGGTGCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * * *
14694183 GTGCTAGTAGCAACCCTCGGTTCGGTGCGATCTTAGACTGGAAATGAACT-C---TG--T----T
696 GTGCT-GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
14694238 -----TG-----C---T---TAATTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACTAGA
760 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** **
14694287 GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGTCG
825 GGGGCGGGATGCGCAAGCC--GGA-------GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCG
14694352 C
881 C
* * * *
14694353 AACCCTC-GATCGGGTCCGATCTTAGACTCGGAATGAACTCCATATGCCTAAGCCAACTGACGAA
1 AACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
14694417 ACGAGCGACCGGGCGGGCAATACGTCGGCCAGAGAGACGGGATACGCAAGTCATGGATCGATAAG
65 AC-A--GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
14694482 GTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGT-A
127 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* *
14694546 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTT
192 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
14694611 TTCATGATTTTTGAAACTTTTTGAGGTTCGAGA-TTTTTAAAATTTTTTTGGAAGGATTTTTGG-
257 TTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
14694674 CCCAAAGC-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATG------------CA-C-AAAAA
322 CCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
14694724 ----AA-T-T-C---A------G--CATTTGAAAAAAGTGTCCGCAATTCA-ATCACTTTAATGG
386 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGG
*
14694770 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGA
450 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *** *
14694835 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCACACATCATACACACACACA
515 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-
* * * * * * ** * *
14694900 CCCCCGGCCCCCCTAATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTCTGGC
579 CCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGAC
* * * * * *
14694965 GGTGGTGCCCCAACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTGTCGTA
643 GATGGTG-CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
14695030 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
707 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
14695095 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGACCAGAGGAGCGGGATGC
772 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
14695160 ATAAGTCGGG
Statistics
Matches: 9089, Mismatches: 1049, Indels: 865
0.83 0.10 0.08
Matches are distributed among these distances:
810 1 0.00
811 174 0.02
812 3 0.00
813 1 0.00
814 2 0.00
815 2 0.00
816 2 0.00
819 2 0.00
821 1 0.00
822 8 0.00
823 1 0.00
824 1 0.00
825 3 0.00
829 5 0.00
830 1 0.00
831 2 0.00
835 38 0.00
836 40 0.00
839 2 0.00
841 1 0.00
843 13 0.00
844 26 0.00
845 32 0.00
846 84 0.01
847 105 0.01
849 1 0.00
850 2 0.00
851 41 0.00
852 7 0.00
853 5 0.00
854 1 0.00
855 5 0.00
856 7 0.00
857 224 0.02
858 131 0.01
859 150 0.02
860 5 0.00
861 54 0.01
862 2 0.00
863 3 0.00
864 7 0.00
865 7 0.00
866 227 0.02
867 34 0.00
868 6 0.00
869 7 0.00
870 6 0.00
871 4 0.00
872 13 0.00
873 4 0.00
874 8 0.00
875 4 0.00
876 7 0.00
877 194 0.02
878 454 0.05
879 135 0.01
880 465 0.05
881 226 0.02
882 273 0.03
883 924 0.10
884 112 0.01
885 4 0.00
886 1 0.00
887 237 0.03
888 1 0.00
889 1 0.00
890 3 0.00
891 84 0.01
892 1 0.00
893 55 0.01
894 338 0.04
895 202 0.02
896 535 0.06
897 459 0.05
898 30 0.00
899 241 0.03
900 461 0.05
901 369 0.04
902 13 0.00
903 300 0.03
904 121 0.01
905 56 0.01
906 418 0.05
907 278 0.03
908 57 0.01
909 348 0.04
910 170 0.02
911 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CAGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
CCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
CCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
AGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGC
Found at i:14687147 original size:26 final size:26
Alignment explanation
Indices: 14687111--14687163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14687101 CCGGTTCGAT
*
14687111 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
14687137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14687163 C
1 C
14687164 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14688040 original size:26 final size:26
Alignment explanation
Indices: 14688011--14688063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14688001 CTGGTCCAAT
*
14688011 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCAGTATG
*
14688037 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGAAATGAACTCAGTATG
14688063 C
1 C
14688064 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCAGTATG
Found at i:14690678 original size:26 final size:26
Alignment explanation
Indices: 14690649--14690701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14690639 CTGGTCCGAT
* * *
14690649 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
14690675 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
14690701 C
1 C
14690702 ATAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:14692475 original size:26 final size:26
Alignment explanation
Indices: 14692446--14692498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14692436 CTGATCCGAT
**
14692446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
*
14692472 CTTAGACTACGAATGAATTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
14692498 C
1 C
14692499 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:14695078 original size:26 final size:26
Alignment explanation
Indices: 14695049--14695101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14695039 CTGGTCCGAT
*
14695049 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14695075 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14695101 C
1 C
14695102 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14697287 original size:26 final size:26
Alignment explanation
Indices: 14697236--14697288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14697226 CCGGTCCGAT
**
14697236 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14697262 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14697288 C
1 C
14697289 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14698826 original size:26 final size:26
Alignment explanation
Indices: 14698790--14698842 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14698780 CTAGTTCGAT
14698790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14698816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14698842 C
1 C
14698843 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14699721 original size:26 final size:26
Alignment explanation
Indices: 14699692--14699744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14699682 CTGGTCCGAT
14699692 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
*
14699718 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
14699744 C
1 C
14699745 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:14699999 original size:902 final size:903
Alignment explanation
Indices: 14697932--14701557 Score: 4740
Period size: 902 Copynumber: 4.0 Consensus size: 903
14697922 CTGGTCTGAT
* * * *
14697932 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-AACCGTGCG-GACGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAA-CGTGCGAG-CACTCA
* * * * * * *
14697995 GCCGGCCAGAGGGGCGGGATGCGCAAG-CTGGGGATCAACCGAGTCCACCTTTACGTGCTGCCGA
64 GCCGGCCAGAGGGGCAGGATGCGCAAGCCT-AGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * *
14698059 TCCTTCTACCGCAGCCCTCGA-TCAGGTTCAATCTTAGATTAGGAATGAACTCCGTATGCCTAAG
128 TCCTGCTACTGCAACCCTCGATTCA-GTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* ** * * * *
14698123 CCAACCGATGAAACGA----GCGGGCGGAAGGGCGAGCATTTCGCCGGCCATAGAGACGGGATGC
192 CCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC
* * * *
14698184 GCAAGACGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
257 GCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAAT
*
14698249 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
14698314 AGACAACTCTTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
* ** * * *
14698379 TTTTCGGAAGGAATTTTTTCCCCAAACTTCGTACATGTGATCCTTGAATTTTTGTTGGCATGCAC
452 TTTTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCAC
* *
14698444 AAAAAAATTCAGCCAAAAACTCGAA-TGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14698508 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
** ** * *
14698573 TGAGTTCTTAAGGTTTGATGAGGGATAGGCAGCCAATATAAGGGCCAAGTACCAG----CA---C
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGC
* * * * *
14698631 -C--CA--T-CGCACACCCCCCAGCCCCCCCGATC-TCCG-GACCCCAATGCCGTCGGTTAGGTT
712 ACATCATGTGCGCACACCCCCCCGACCCCCCGATCGT-CGAAACCCCAACGCCGTCGGTCAGGTT
** *
14698688 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGC
776 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** *
14698753 CCAGCATGTGCTGTCGTAACCCTCTGTCTAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14698816 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGAGCACTCAGC
* * * * * ** ** * * *
14698881 CGACCAAAAGGGCGGGACGTACAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGTCGAT-C
66 CGGCCAGAGGGGCAGGATGCGCAAGCCTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14698945 TGGCTGCTGCAACCCTCGGTCCAGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGCC
131 T-GCTACTGCAACCCTCGATTCAGTCCT-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14699009 AACCGATGTAACGAGCGGGCGGGTGGGCGGGCGGGCACTACGGCGGCCATAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
14699074 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGACAATGC
259 AAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGC
14699139 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
14699204 ACGACTCGTTTTCTTTTTTTCACAATTTTTGAAATTTTTTTCGGTTCGAGATTTTTTAAACTTTT
389 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* * *
14699269 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCATGCACAA
454 TTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAA
* * * *
14699334 GAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14699399 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGTGTTTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14699464 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCAC
* **
14699529 ATCATGTGCGCACACCCCCCCGACCCTCCGATCGTCGAAACCCCAACGCCACCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTC
** * *
14699594 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCTGTACATGCCCGA-CCCA
779 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14699658 GCATGTGCTATCGTAACCCTCGGTCTGGTCCGATCTTAGA-TCGGGAATGAACTCCGTATG
844 GCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATG
* *
14699718 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTAAACCAACGAAACGAACGTGCGAGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGAGCACTCAGC
* * * * ** *
14699783 CAGCCAGAGGGGCAAGATGCTCAAGCCTAGGATTGGTCGGGCCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14699848 TGCTGCTGTAACCCTCGATTCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAA
131 TGCTACTGCAACCCTCGATTCAGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
14699913 CCGACAAAACGAGCCGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
14699978 CCCGTGGATCAATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCA
261 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCA
***
14700043 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TCTACGTGAAGTTTCATGGTGCGA
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGA
** ** * * *
14700107 CGACTCGTTTTCTATTTTTCATGATTTTTGAAAGATTTTGCGATCCGAGAATTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * * * * * * * *
14700172 TTGAAAGTAGTTTTGGACCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGTAGGCATAAA
455 TCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAA
* *
14700237 AAAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14700302 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTT-AGGGGGGGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14700366 GTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACA
* * * * *
14700431 TCATGTGCACACACCCCCCCGACCCCCCCGATCGTCTAAACCCCAACGCCGTCTGTTAGGTTTTC
715 TCATGTGCGCACACCCCCCCGA-CCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTC
* ** *
14700496 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCCAGCCCA
779 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
14700561 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
844 GCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14700621 CTTAAATTTGGAAAGGAACTCCGTATGCCTAAGTAAACCAACGAAACGAGCGTGCGAGCACTCAG
1 CTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGAGCACTCAG
* * * *
14700686 CCGGCCAGAGGGGTAGGATGCGCAAGCCTAGGA-CTGGCCGGGTCCCCCTTTGTGTGCTGCCGAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGCCTAGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
14700750 CCTGCTACTGCAACCCTTGGTTTAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
129 CCTGCTACTGCAACCCTCGATTCAGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
14700815 AACCGACGAAATGAGCGGGCGGG-GCGGTGGGCAAGCACTACGTCAGCCAGAGAGACGGGATGCG
194 AACCGACGAAACGAGCGGGCGGGCG-GGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCG
*
14700879 CAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATG
258 CAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATG
* * * *
14700944 CCATTTTTATGGCTTGCAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGGACTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
14701009 GACGACTCATTTTCTATTTTTCTCGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTATATTT
388 GACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * * *
14701074 TTTCAAAAGGAATTTTGGCCCCAAACATGGTAGACATGA-CCTTGTATTTTTGTTGGCGTGCACA
453 TTTCGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACA
*
14701138 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14701203 TTCAGACACTTTAATGG-TACTGGCAGCAAACCTATAAAAATCTCAAATGCTCTTTAAGAGGGTG
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * *
14701267 TGATTTCTCGAGGTTTGATAAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGT
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGC
* * * *
14701332 ACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTC
712 ACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTC
** * * * * * *
14701396 TCCGGTGATGCTCCAACGATGGTG-ACCTATGAAGACAAATGCGGCACCAGCACATGCGCGAGCC
777 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** *
14701460 CAACATGTGCT-TCCGTAA-CCTCAGTCCGGTTTGATCTTAGACTAGGAATGAACT-CGATATG
842 CAGCATGTGCTGT-CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG-TATG
*
14701521 CTTAGACT-GGAATGAACTTCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
14701558 CTCGGTCCGG
Statistics
Matches: 2401, Mismatches: 300, Indels: 68
0.87 0.11 0.02
Matches are distributed among these distances:
883 3 0.00
884 162 0.07
885 5 0.00
888 299 0.12
889 148 0.06
893 2 0.00
896 1 0.00
897 1 0.00
898 25 0.01
899 4 0.00
900 41 0.02
901 142 0.06
902 793 0.33
903 267 0.11
904 506 0.21
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGAGCACTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCTAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACTGCAACCCTCGATTCAGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGAAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCAAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGACCCCCCGATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTCCG
ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14701536 original size:25 final size:26
Alignment explanation
Indices: 14701495--14701546 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14701485 CCGGTTTGAT
14701495 CTTAGACTAGGAATGAAC-TCGATATG
1 CTTAGACTAGGAATGAACTTCG-TATG
14701521 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
14701546 C
1 C
14701547 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:14701610 original size:26 final size:26
Alignment explanation
Indices: 14701574--14701626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14701564 CCGGTCCGAT
14701574 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14701600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14701626 C
1 C
14701627 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14703256 original size:26 final size:26
Alignment explanation
Indices: 14703217--14703269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14703207 TCAATCCGCT
14703217 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
*
14703243 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
14703269 C
1 C
14703270 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:14703258 original size:740 final size:739
Alignment explanation
Indices: 14701759--14703292 Score: 2207
Period size: 740 Copynumber: 2.1 Consensus size: 739
14701749 CCGGTACAAT
* * *
14701759 CTTAGACTAGGAATAAACTCCATATGCCTAAGCCAACAGACGAAACGAGCGGGCGGACGGGCGGG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAACAGACGAAACGA----GCAGACGGGCGGG
* * *
14701824 CGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
60 CAGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAAGTGGGT
* * *
14701889 TTCGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATAG
125 TTAGGCACATCTTCAAATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATAG
*
14701954 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCA
*
14702019 AAACCTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTCTGCCCAAAACTTTGTA
255 AAACCTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTCTGCCCAAAACTTGGTA
* *
14702084 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCAAAAAACTCGAAGTGTACAA
320 GACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCAAAAAACTCGAAGTGTACAA
*
14702149 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTACACACTTTAATGGCTACTGGCAGCAAAC
385 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCTACACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
14702214 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
450 CTGTAAAATATCAAATGCTCTTTAAGAGGATATGAGTTCTCAAGCTTTGATGAGGGATAGGGGCC
14702279 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGCCCCCCCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGCCCCCCCG
* * * * ** **
14702344 ATCATCGGAACCCTAATGCCACCGGTCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCCCGGCA
580 ATCATCGAAACCCCAATACCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCA
* *
14702409 AAGAAAAATACAGCTCCAACACATGCCCGAGCCCAGCAAGTGCTGTCGCAACCCTCGGTCCGATC
645 AAGAAAAATACAGCACCAACACATGCCCGAGCCCAGCAAGTGCTGTCGCAACCCTCGGTCCAATC
* * * *
14702474 TGATCTTCGACTGGGAATGAGCTCCGTATG
710 CGATCTTAGACTGAGAATGAACTCCGTATG
14702504 CTTAGACTGGAATGAACTCCGTATGCCTAAGCGAACAGACGAAACGAGCAGACGGGCGGGCAGGC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGC-AACAGACGAAACGAGCAGACGGGCGGGCAGGC
**
14702569 ACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGG
* ** * * *
14702634 TACATCTTCAAATTTATGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGT
130 CACATCTTCAAATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATAGTCCCT
** *
14702699 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACT
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACC
* * * *
14702764 TTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCTAAACTTGGTAGCCA
260 TTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTCT-GCCCAAAACTTGGTAGACA
* *
14702828 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATT
* * *
14702893 TTGTGACCATTTCAAAAAAGTGTTCCCATT-TCAGACAC-TTAATGGCTACTGGCAGTAAACCTG
389 TTGTGACCATTTCAAAAAAGTGTCCCCATTCT-ACACACTTTAATGGCTACTGGCAGCAAACCTG
** *
14702956 TAAAATATCAAATGCTCTTTAAG-GAGATATGAGTTCTTGAGCTTTGATGAGGGATAGGGTCCCA
453 TAAAATATCAAATGCTCTTTAAGAG-GATATGAGTTCTCAAGCTTTGATGAGGGATAGGGGCCCA
* * *
14703020 ATATAAGGGCCAGGTACCAGCACCCATCACACATCATGTGCGCA-AACCCCCCCGGGCCCCCTGA
517 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAA-CCCCCCGGCCCCCCCGA
* * ** * **
14703084 TCGTCGAAACCCCATTACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGTGA
581 TCATCGAAACCCCAATACCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAA
* *** * * * *
14703149 AGAAAATTGTGGCACCAACACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTTGGTTCAATCC
646 AGAAAAATACAGCACCAACACATGCCCGAGCCCAGCAAGTGCTGTCGCAACCCTCGGTCCAATCC
* *
14703214 GCTCTTAGACTGAGAATGAACTTCGTATG
711 GATCTTAGACTGAGAATGAACTCCGTATG
*
14703243 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCA-ACGAAACGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAG-CAA-CAGACGAAACGAGC
14703293 GTGCGGGTGG
Statistics
Matches: 704, Mismatches: 77, Indels: 21
0.88 0.10 0.03
Matches are distributed among these distances:
738 3 0.00
739 274 0.39
740 380 0.54
741 3 0.00
743 1 0.00
744 35 0.05
745 8 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (739 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCAACAGACGAAACGAGCAGACGGGCGGGCAGGCA
CTACGCCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGC
ACATCTTCAAATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATAGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACCT
TTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTCTGCCCAAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTCAAAAAAGTGTCCCCATTCTACACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATATCAAATGCTCTTTAAGAGGATATGAGTTCTCAAGCTTTGATGAGGGATAGGGGCCCAATAT
AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGCCCCCCCGATCATC
GAAACCCCAATACCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAA
AATACAGCACCAACACATGCCCGAGCCCAGCAAGTGCTGTCGCAACCCTCGGTCCAATCCGATCT
TAGACTGAGAATGAACTCCGTATG
Found at i:14704554 original size:896 final size:892
Alignment explanation
Indices: 14702504--14704915 Score: 3172
Period size: 896 Copynumber: 2.7 Consensus size: 892
14702494 GCTCCGTATG
* * * * *
14702504 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCGAACAGACGAAACGAGCAGACGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCGGG
* *
14702568 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * **
14702633 GTACATCTTCAAATTTATGTGTGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG-AAATTTCATACAATGGTCC
*
14702697 GTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
* *
14702762 CTTTTTGCT-GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGC
260 CTTTTTG-TGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
14702826 CATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
14702891 TTTTGTGACCATTTCAAAAAAGTGTTCCCATTTCAGACAC-TTAATGGCTACTGGCAGTAAACCT
388 TTTTGTGACCATTTGAAAAAAGTG-TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * ** * **
14702955 GTAAAATATCAAATGCTCTTTAAGGAGATATGAGTTCTTGAGCTTTGATGAGGGATAGGGTCCCA
452 GTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * *
14703020 ATATAAGGGCCAGGTACCAGCACCCATC-ACACATCATGTGCGCAAACCCCCCCGGGCCCCCTGA
516 ATATAAGGGCCAAGTACCAGCACCCATCGACA-ATCATGTGCGC--ACACCCCC-GGCCCCCCGA
* * * * *
14703084 TCGTCGAAACCCCATTACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGTGA
577 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCTCGGTGA
** * * * ** *
14703149 AGAAAATTGTGGCACCAACACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTTGGTTCAATCC
642 AGAAAATTACGGCACCAAAACATGCCCGAGCCCACCATGTGCTACCGCAACCCTCGGTTCAATCC
* * * * *
14703214 GCTCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
707 GATCTTAGACTGAGAAAGAACTCCGTATGCTTACACTGGGAATGAACACTGTATGCCTAAGTCAA
* * * * *
14703279 CCAACGAAACGAGCGTGCGGGTGGTCAGCCAGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCAG
772 CCAACGAAACGAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGGGATACGCAAGCCAGGGATCAC
* * *
14703344 CGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCTGGTCCGAT
837 CGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCAGAT
* * *
14703400 CTTAGATTGGGAATCAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCCAGGCGGGCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CAGGC--G-G-
* *
14703464 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGG
61 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
* * *
14703529 TTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTG-TATATTCATACGAT
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAT-TTCATACAAT
*
14703593 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
190 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * * *
14703658 TCAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACTTGG
255 TGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
14703723 TAGACGTGATCCTTGTATGTTTTTTGGCACGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTAC
320 TAGACGTGATCCTTGTAT-TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14703788 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTTCTGGCAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAA
* **
14703853 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAG-TCTCAAGGTTTGATGACGGAGGGGGGG
448 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * * *
14703917 CCAGTATATGGG-CAAGTGCCAGCCACCCATCGTACAATCATGTGCGCACACCCCCGACCCCCCC
513 CCAATATAAGGGCCAAGTACCAG-CACCCATCG-ACAATCATGTGCGCACACCCCCG-GCCCCCC
* * * *
14703981 GATCGCCGGAACCCCAATGCCGCCGGTTCAGG-TCTCCGATGATAACGT-CGAGTGATGGTTCC-
575 GATCGTCGGAACCCCAATGCCGCCGG-TCAGGTTCTCCGACGAT-AC-TCCGA-CGATGGTGCCT
* ** *
14704043 CGG-GAAGAAAA-TACGGCACCAAAAACTTGTTCGAGCCCACCATGCTGCTACCGTAA-CCTCGG
636 CGGTGAAGAAAATTACGGCACC-AAAACATGCCCGAGCCCACCATG-TGCTACCGCAACCCTCGG
** * **
14704105 -TCGGGTCTGATCTTATTCTG-GAAAGAACTCCGTATGCTTACACT-GGAATGAACAC-GTATGC
699 TTC-AATCCGATCTTAGACTGAGAAAGAACTCCGTATGCTTACACTGGGAATGAACACTGTATGC
** * * *
14704166 CTAAGTCAACCCATTGAAATGAGCCGTACGGGTGCTTAGCCGGCCAGAGGGGCGGGATACGCAAG
763 CTAAGTCAA-CCAACGAAACGAG-CGTACGGGTGCTCAGCCAGCCAGAGGGGCGGGATACGCAAG
** * * * * * *
14704231 CTGGGGATTGACCGGGTCTCCCTTTGTGTGTTGCCGATCCTGCTGCTGCAACCCTCGGTCTGGTC
826 CCAGGGA-TCACC-GGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTC
14704296 AGAT
889 AGAT
* *
14704300 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCAGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCGGG
* *
14704365 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
*
14704430 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAATTTCATACAATGTTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAATTTCATACAATGGTCCC
*
14704495 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
* * ** * *** * *
14704560 TTTTAGTGGTTTGAAATTTTTTAAAATTTTTTGGGAAGGAGTTTTGGTGACAGACTTGGTTGACG
261 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * * * *
14704625 TGATCCTTGAATTTTTGTTCGCATTCACAAAAACATTCAGCTACAAACTTGAAATGTACAAGATT
326 TGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
14704690 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
14704755 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
*
14704820 ATAAGGGCCAAGTACCAGCACCCATCG-CACATCATGTGCGCACACCCCCCGGCCCCCCGATCAT
518 ATAAGGGCCAAGTACCAGCACCCATCGACA-ATCATGTGCGCACA-CCCCCGGCCCCCCGATCGT
* *
14704884 CGGAACCCTAATGCCACCGGTCAGGTTCTCCG
581 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
14704916 GCAATGGTAC
Statistics
Matches: 1324, Mismatches: 155, Indels: 73
0.85 0.10 0.05
Matches are distributed among these distances:
895 4 0.00
896 400 0.30
897 125 0.09
898 121 0.09
899 106 0.08
900 161 0.12
901 358 0.27
902 49 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAATTTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGACAATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCTCGGTGAAGAAAATTA
CGGCACCAAAACATGCCCGAGCCCACCATGTGCTACCGCAACCCTCGGTTCAATCCGATCTTAGA
CTGAGAAAGAACTCCGTATGCTTACACTGGGAATGAACACTGTATGCCTAAGTCAACCAACGAAA
CGAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGGGATACGCAAGCCAGGGATCACCGGTCCCCC
TCTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCAGAT
Found at i:14705867 original size:26 final size:25
Alignment explanation
Indices: 14705838--14705889 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
14705828 TCAGTCCGAT
*
14705838 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCC-TATG
* *
14705864 CTTAGACTGGGAATGATCTCCTATG
1 CTTAGACTGGAAATGAACTCCTATG
14705889 C
1 C
14705890 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAAATGAACTCCTATG
Found at i:14706779 original size:26 final size:26
Alignment explanation
Indices: 14706743--14706793 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14706733 TTCGATCTTA
14706743 GACTGCGAATGAACTCCATATGCTTC
1 GACTGCGAATGAACTCCATATGCTTC
* **
14706769 GACTGGGAATGAACTCTGTATGCTT
1 GACTGCGAATGAACTCCATATGCTT
14706794 ATGTTAACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
GACTGCGAATGAACTCCATATGCTTC
Found at i:14707116 original size:902 final size:899
Alignment explanation
Indices: 14705009--14709052 Score: 5044
Period size: 903 Copynumber: 4.5 Consensus size: 899
14704999 CATGCCCGAT
* * * * ** * * * *
14705009 CGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGAAAGTCGTTGTTCGATGGGGTCCCGCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *
14705074 TGCTTGCTGTCGATCCTGCTA-TCGCAACCCTGGGTCTTGTCCAATCTTAGACTGGGAATGAACT
66 TGCGTGCTGCCGATCATACTACT-GCAACCCTCGGTC-TGTCCAATCTTAGACTGGGAATGAACT
* * * * * * *
14705138 CCGTATGCCTAAACCAACTGACAAAATGAGCGGGCCGGTGGGCTGGCGGGCACTACGCCGGCCAG
129 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAG
** **
14705203 AGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGTTACATCTTCATATT
193 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
14705268 TCTACATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTG
258 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * ** *
14705333 AAGTTTAATGGCAAGATGACCCATTTTCTATTTTTCAC-ATTTTTTGAAACTTTTTGTGGTTCGG
323 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTAGAAACTTTTTACGGTTCAG
* *
14705397 GATTTTTTAAAATTTTTTCGGATGGCATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
387 GATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
14705462 TTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGA
452 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGA
* * *
14705527 AAAAAGTGTCCCTATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
517 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* ** *
14705592 TTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATAGAAGGGCCAAGTA
582 TCTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGGGACA-GGGGCCAATATAAGGGCCAAGTA
* * * * *
14705657 CCAGCACCCATCTCACATCATGTGCACACACCCCCCCAACCCCCTCGACCGTCGGAACCCCAATG
646 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATG
* * * **
14705722 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTA--ATGGTGCCTCGACGAAGAAAAATATGGCAC
710 CCGCCGGTCAGGTTCTCCGATGATGCT-CGG-ACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * * * * *
14705785 CAACACATGCCCGAGCCTAGCTTGTGCTGCCGCAACCCTCGATTCAGTCCGATCTTAGATTGGAA
773 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGA
* * *
14705850 ATGAACTCCGTATGCTTAGACTGGGAATGATCTCCTATGCCTAAGTCAACCCACGAAACGAG
838 ATGAACTCCATATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
14705912 TGTACGGGTGCTCAGTCGCCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* ** *
14705977 TGCGTGCTGCCGATCATGCTACTGCAACCCTTAGTCTAGTTCAATCTTAGACTGGGAATGAACTC
66 TGCGTGCTGCCGATCATACTACTGCAACCCTCGGTCT-GTCCAATCTTAGACTGGGAATGAACTC
* * * *
14706042 CGTATGCCTAAGGCAACCGACAAAACGAGCGGGCGGGCGGGCGGGCAGGG-ACTACGCTGGTCAG
130 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-GGGC-GGGCACTACGCCGGCCAG
* *
14706106 AGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATT
193 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * **
14706171 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCTTTAAGCCTTTGCGTG
258 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
*
14706236 AAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTAGAAACTTTTTACGGTTCAGG
323 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTTCAGG
* ** * * * * *
14706301 ATTTTTTAAAATGTTTTCAAAAGAAATTTTGGCCCCAAACTTGGTAAACATAATCCTTGTAATTT
388 ATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * *
14706366 TGCTGGCATGCACAAAAAACTTCAGCTAAAAACTCAAACTGTACATGATTTTGTGACCATTTGAA
453 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAA
*
14706431 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
518 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
14706496 CTTT-AA-GGTGATGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCAATATAAGGGCCAAGTA
583 CTTTAAATGG-G-TGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGCCAATATAAGGGCCAAGTA
* * *
14706559 CCAGCACCCATCGCATATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGC
646 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGC
* * * * * *
14706624 TGCCGTTCAGTTTCTCCGACGATGCTTC-GACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCA
711 CGCCGGTCAGGTTCTCCGATGATGC-TCGGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * *
14706688 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTTGATCCGGTTCGATCTTAGACTGCGAAT
775 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAAT
* * * * * *
14706753 GAACTCCATATGCTTCGACTGGGAATGAACTCTGTATGCTTATGTTAACCTACGAAACAAG
840 GAACTCCATATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
14706814 CGTGCAGGCGCTCAGTCGGCCAGAGGGGTGAGATGGGCAAGCCGGGGATCGGTTGGGTCCCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * *
14706879 TACGTGGTGCCGATGC-TACTGCTGCAACCCTCAGTCCTGTCCAATCTTAGACTGGGAATGAACT
66 TGCGTGCTGCCGAT-CATACTACTGCAACCCTCGGT-CTGTCCAATCTTAGACTGGGAATGAACT
* * * *
14706943 CCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGTGGGTGGGCACTATGCCGGCCAA
129 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-GGGCGGGCACTACGCCGGCCAG
* * ** *
14707008 AGAGATGGGAAGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATT
193 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
14707073 TCTACATGCCAATACCATTTTTATGGCTTGTAAATTTATACAATCGTCCCTTAAGCCTTCACGTG
258 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * * *
14707138 CAGTTTCATGGCAGGACGGCTCGTTTTCTATTTGTCATGATTTTCA-AAACTTTTTTCGG-TCTG
323 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-AGAAACTTTTTACGGTTC-A
*
14707201 GGATTTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
386 GGA-TTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
14707265 TTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACAATTT
450 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTT
* *
14707329 GAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
515 GAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14707394 GCTCTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAG
580 GCTCTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-CAGGGGCCAATATAAGGGCCAAG
* * * *
14707459 TACCAGCACCCATCGCACATCATGTGCGCGCACCCCCTG-GCCCCCCGATCGTCGGAACCCCGAT
644 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAAT
* *
14707523 GCCGCCGATCAGGTTCTCCGATGATGCTCGGACGATGGTGCCCCGATGAAGAAAAATGCGGCACC
709 GCCGCCGGTCAGGTTCTCCGATGATGCTCGGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
14707588 AGCACATGCCCGAGCCTAGTATGTGCTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGA
774 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTC-GATCTTAGACTGGGA
* *
14707652 ATGAACTGCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG
838 ATGAACTCCATATGCTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAG
* * *
14707715 CGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGT-CCCCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * ** ***
14707779 TGCGTGCTGCCGATCCTACTACTGAAACCCTCGGTTCAATTTGATCTTAGACTGGGAATGAACTC
66 TGCGTGCTGCCGATCATACTACTGCAACCCTCGG-TCTGTCCAATCTTAGACTGGGAATGAACTC
* * *
14707844 CGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGC---GGACGGGCAATACGCCGGCCAGAT
130 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGA-
* *
14707906 G-GACGGGATGCGTAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
194 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** * *
14707970 CTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCAAGTGA
259 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
14708035 AGTTTCATGGCAGGACGGCTCGTTTTCTATTTGTCACGATTTTAAAAACTTTTTACGGTTC-GAG
324 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTTCAG-G
* *
14708099 ATTTTTTTAAATTTTTTCAGAA-GAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
388 ATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
14708163 TGTTGGCATGCACAAAAAAATTTAGCTAAAAACT----C-G----AGATTTTGTGACCATTTGAA
453 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAA
*
14708219 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT
518 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
14708284 CTTTAAATGGGTCTGAGTTCTCGAGGTTTGATGCGGGATAGGGAGCCAATATAAGGGCCAAGTAC
583 CTTTAAATGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGG-GCCAATATAAGGGCCAAGTAC
* * * ** * *
14708349 TAGCACCCATTC-CACATCATGTACGCACACCCCCCGACCCCCTCGATTATCGAAACCCCAATAC
647 CAGCACCCA-TCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGC
* * * * *
14708413 CGTCGGTCAAGTTCTTCGGTGATGCTCTGG-CGATGGTG-CCCGACGAAGAAAAATGTGGCACCA
711 CGCCGGTCAGGTTCTCCGATGATGCTC-GGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* *
14708476 GCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCG-----G-TC---C---GA-T-----T
775 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAAT
* * *
14708523 ----T---GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACGCACGAAACGAG
840 GAACTCCATATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
14708576 CGTGCGGGCCCTCAGCCGGCCAGAGGGGCGGGATCCGCAAGCCGGGGATCAGTCGGGTCCCTCTC
1 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * ** ** *
14708641 TGCGTGCTGCCGATCTTGC-AGCTGCAACCAACGGTCTGGTCTGATCTTAGACTGGGAATGGACT
66 TGCGTGCTGCCGATCATACTA-CTGCAACCCTCGGTCT-GTCCAATCTTAGACTGGGAATGAACT
* * *
14708705 CCGTATGCCTAAGCCAACTGACGAAACGA----GTGGGC---GGGCGGGCA-TACG--AGCCAGA
129 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGA
** * * *
14708760 GAGACGGGACACGCAAGCCGTGGATCGATAGTGTGTTAGGTGGGTTTAGGCATATCTTCATATTT
194 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
14708825 CTACATGCCAATGCCATTTTTGTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
259 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
14708890 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCGTTCAGGA
324 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTTCAGGA
* * * * *
14708955 TTTTTTAAAATTTTTTTGAAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
389 TTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
14709020 GTTGGCATGCACAAAAAAATTCAACTAAAAACT
454 GTTGGCATGCACAAAAAAATTCAGCTAAAAACT
14709053 TATATTGGCC
Statistics
Matches: 2758, Mismatches: 343, Indels: 127
0.85 0.11 0.04
Matches are distributed among these distances:
854 1 0.00
855 194 0.07
856 72 0.03
857 4 0.00
858 13 0.00
861 99 0.04
862 85 0.03
865 1 0.00
869 1 0.00
874 1 0.00
875 2 0.00
878 1 0.00
882 3 0.00
886 4 0.00
887 224 0.08
888 52 0.02
889 2 0.00
895 71 0.03
896 211 0.08
897 3 0.00
899 2 0.00
900 98 0.04
901 539 0.20
902 514 0.19
903 556 0.20
904 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
TGCGTGCTGCCGATCATACTACTGCAACCCTCGGTCTGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTTCAGGATT
TTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACAATTTGAAAAA
AGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAATGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCG
GTCAGGTTCTCCGATGATGCTCGGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTC
CATATGCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAG
Found at i:14709688 original size:11 final size:11
Alignment explanation
Indices: 14709659--14709691 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14709649 CACCGGGCAC
*
14709659 CATCGTCAGAG
1 CATCGTCGGAG
14709670 CATCGTCGGAG
1 CATCGTCGGAG
14709681 CATCGTCGGAG
1 CATCGTCGGAG
14709692 AACCTAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14710418 original size:11 final size:11
Alignment explanation
Indices: 14710389--14710421 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14710379 ACCGGGGCAC
*
14710389 CATCGTCAGAG
1 CATCGTCGGAG
14710400 CATCGTCGGAG
1 CATCGTCGGAG
14710411 CATCGTCGGAG
1 CATCGTCGGAG
14710422 AACCTAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14710901 original size:730 final size:729
Alignment explanation
Indices: 14709051--14711042 Score: 3583
Period size: 730 Copynumber: 2.7 Consensus size: 729
14709041 CAACTAAAAA
* * * ** *
14709051 CTTATATTGGCCCCCTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
1 CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
14709116 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
14709181 CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
131 CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
14709246 GATCAATTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
196 GATCAATTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
14709311 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
261 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
14709376 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
326 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
* *
14709441 TGTACCTAAACCCTCCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGAG
391 TGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGAG
14709506 TAGTGCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
456 TAGTGCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
14709571 CAGTCTAAGATCAAACTGGACCGAGTGTTACAACAGCACATGTTGGGTTCGGGCATGTGCTGGTG
521 CAGTCTAAGATCAAACTGGACCGAGTGTTACAACAGCACATGTTGGGTTCGGGCATGTGCTGGTG
14709636 CAACATTTTTCTTCACCGGGCACCATCGTCAGAGCATCGTCGGAGCATCGTCGGAGAACCTAATT
586 CAACATTTTTCTTCACCGGGCACCATCGTCAGAGCATCGTCGGAGCATCGTCGGAGAACCTAATT
14709701 GACGGCATTAGGGTTCCAAAAATCGGGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGGT
651 GACGGCATTAGGGTTCCAAAAATCGGGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGGT
14709766 GCTGGTACTTGGCC
716 GCTGGTACTTGGCC
14709780 CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
1 CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
14709845 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
14709910 CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
131 CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
14709975 GATCAATTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
196 GATCAATTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
14710040 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
261 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
14710105 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
326 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
14710170 TGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGAG
391 TGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGAG
*
14710235 TAGTGCCCGCTCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
456 TAGTGCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
14710300 CAGTCTAAGATCAAACTGGACCGAGTGTTACAACAGCACATGTTGGGTTCGGGCATGTGCTGGTG
521 CAGTCTAAGATCAAACTGGACCGAGTGTTACAACAGCACATGTTGGGTTCGGGCATGTGCTGGTG
14710365 CAACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGTCGGAGCATCGTCGGAGAACCTAAT
586 CAACATTTTTCTTCACC-GGGCACCATCGTCAGAGCATCGTCGGAGCATCGTCGGAGAACCTAAT
14710430 TGACGGCATTAGGGTTCCAAAAATCGGGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGG
650 TGACGGCATTAGGGTTCCAAAAATCGGGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGG
14710495 TGCTGGTACTTGGCC
715 TGCTGGTACTTGGCC
14710510 CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
1 CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
* * * *
14710575 ATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTATGAAATGTGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
14710640 CACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
131 CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
14710705 GATC-ATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAACTTTTAAAAAATCCCGAACCA
196 GATCAAT-TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
14710769 TAAAAAGTTTCACAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
260 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * ** * *
14710834 GCTTAAGGGACCATTGTTTTAATTTACAAGCCATTAAAATGTTATTGGCAGGCAAAAATATGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAG
* * * *
14710899 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGCC-GA
390 ATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGA
* * * * * * *
14710963 CGTAATGCCCGCCCGCCTGTCTGCCCGTTTTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
455 -GTAGTGCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATT
*
14711028 CCCAGTGTAAGATCA
519 CCCAGTCTAAGATCA
14711043 GACCGGATCG
Statistics
Matches: 1219, Mismatches: 41, Indels: 5
0.96 0.03 0.00
Matches are distributed among these distances:
729 597 0.49
730 622 0.51
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (729 bp):
CTTATATTGGCCCCCTATCCCTCACCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTCAG
ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCAATTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGCATCCCGTCTCTATGGCCGGAG
TAGTGCCCGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAAACTGGACCGAGTGTTACAACAGCACATGTTGGGTTCGGGCATGTGCTGGTG
CAACATTTTTCTTCACCGGGCACCATCGTCAGAGCATCGTCGGAGCATCGTCGGAGAACCTAATT
GACGGCATTAGGGTTCCAAAAATCGGGGGGGGCCGGGGGGTGTATGCACATGATGTGCGATGGGT
GCTGGTACTTGGCC
Found at i:14711200 original size:26 final size:26
Alignment explanation
Indices: 14711171--14711223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14711161 GTTGACTTAG
* *
14711171 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
14711197 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
14711223 G
1 G
14711224 ATCGGGACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:14712071 original size:26 final size:26
Alignment explanation
Indices: 14712041--14712093 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14712031 GTTGACTTAG
*
14712041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
14712067 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
14712093 G
1 G
14712094 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:14715073 original size:883 final size:874
Alignment explanation
Indices: 14712824--14715513 Score: 3647
Period size: 903 Copynumber: 3.0 Consensus size: 874
14712814 GGACCGAGAG
* * *
14712824 GGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGTGTGCGCAAATGATGTGCGATAGGTGCTG
1 GGCATTGGGGTTCCGA-GATCGAGGGGGGCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTG
14712889 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAG
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
14712953 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
130 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
14713018 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTATTATGCAAGCCAACA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC-A-TCAACA
* * *
14713083 AAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAA----ACCGAAAAAATTTTAAAAAATAC
258 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCCTTCCGAAAAAATTTTAAAAAATCC
* *
14713144 CGAACCATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCA
323 CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
14713209 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
388 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
*
14713274 TATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
453 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
14713339 GGCCGGCGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
518 GGCCGACGTAGTGCCCG-CCT-CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
* * *
14713404 TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTTTGGTAGCAGGATCGACAGCATGTAGAG
581 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAGGATCGACAGCATGTAGAG
* ** * *
14713469 GGGGACCCGGCCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAATG--CCCGCACGA
646 GGGGACCCGACCGATCCCCGGCTTGCACATCCCG-CCCTCTGGCCGGCT-AA-GCACCCGCACGC
* * * *
14713532 ACGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCG
708 TCGTTTCGTGGGTTGACTTAGGC------A--T-A----C-G-----G--TACGGAGTTCATTCC
* * * * ** *
14713597 CAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCAGGGCTCCGAAATGTGCTGGTG
752 CAGTCTAAGATCGAAACAGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG
*** ** * * *
14713662 CTGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGAC
817 CCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * *
14713720 GGCATTGGGGTTCCGGCGATCG-GGGGGGCCGGGGCGTGTGCGCACATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCC-GAGATCGAGGGGGGCAGGGG-GTGTGCGCAAATGATGTGCGATGGGTGCT
* *
14713784 GGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAA
64 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
** *
14713849 GAGCATTTGAGATTTTATAGGTTTGCTGGTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
129 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
14713914 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGGCAAC
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT--CAAC
14713979 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
257 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA-TCCTTCCGAAAAAATTTTAAAAAA
* * *
14714044 TCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACT
320 TCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
14714109 TCACGTGAACGCTTAAGGGACTATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
385 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * * *
14714174 GAATATGAAGATGTGCCCAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCATCTC
450 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
14714239 TCTGGCTGACGTAGTGCTCGCTCGTCCGCCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATGCG
515 TCTGGCCGACGTAGTGCCCGC-C-TCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * *
14714304 AAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGAAGCAGGATCGACAGCACGCA
578 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAGGATCGACAGCATGTA
*
14714369 GAGGGGGACCCGACCGACCCCCGGCTTGCACATCCCGCCCTCTGGCCGGCTAAGCACCCGCACGC
643 GAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCTCTGGCCGGCTAAGCACCCGCACGC
* *
14714434 TCGTTTCGTGGGTTGACTTAGGCATACGGTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
708 TCGTTTCGTGGGTTGACTTAGGCATACGGTACGGAGTTCATTCCCAGTCTAAGATCGAAACAGAT
* *
14714499 CGAGGGTTGCGGCACCACATGCTGGGCTTGGGCATGTGTTGGTGCCATATTTTTCTTCGTC-AGG
773 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGA-G
*
14714563 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
837 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* *
14714601 GGCATTGGGGTTCCAGAGATCGGAGGGGCATGGCAGGGGGTGTGCCCAAATGATGTGCAATGGGT
1 GGCATTGGGGTTCC-GAGATC-GAGGGG---GGCAGGGGGTGTGCGCAAATGATGTGCGATGGGT
*
14714666 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
61 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
14714731 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTATCTGAAATGGGGACAC
126 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
14714796 -TTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTATGCATCAA
191 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATC-A
*
14714860 ACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAATTTCCTTCCGAAAAAATTTTAAAA
255 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA--TCCTTCCGAAAAAATTTTAAAA
*
14714925 AATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
318 AATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** **
14714990 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATTCATAAAAATGGCATTGGCACAT
383 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* * *
14715055 AGAAAAATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTACGCAT-CCGTC
448 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
14715119 TCTCTGGCCGACGTAGTGCCCGCCT--ACCCGTTCGCTCGTTTTGTAGGTTGGCTTAGGCATACG
513 TCTCTGGCCGACGTAGTGCCCGCCTCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * * *
14715182 AAGTTCATTCCCAGTCTATGATTGGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAACATGTA
578 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAGGATCGACAGCATGTA
* * * * *
14715247 GAGGGGGACCTGATCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCACCCGCACG
643 GAGGGGGACCCGACCGATCCCCGGCTTGCACATCCC-GCCCTCTGGCCGGCTAAGCACCCGCACG
* *
14715312 CTCGTTTCGTGGGTTGACTTAGG--TA---TACGGAGTTCATTCCCAGTCTGAGATC-AAACTGG
707 CTCGTTTCGTGGGTTGACTTAGGCATACGGTACGGAGTTCATTCCCAGTCTAAGATCGAAAC-AG
* ** * *
14715371 ATCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCTTATTTTTCTTCGTCGC
771 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGA
* * * *
14715436 GGCACCATCGTCGGGGTATCACCGGAGAACCTGACTGGT
836 GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * * *
14715475 GGCATTGGGGTTCTGGCGATCG-GGGGGTCGGGGGGTGTG
1 GGCATTGGGGTTC-CGAGATCGAGGGGGGCAGGGGGTGTG
14715514 TGCCTTAGTC
Statistics
Matches: 1601, Mismatches: 166, Indels: 81
0.87 0.09 0.04
Matches are distributed among these distances:
869 11 0.01
872 4 0.00
873 3 0.00
874 136 0.08
877 2 0.00
878 116 0.07
879 48 0.03
880 2 0.00
881 135 0.08
882 30 0.02
883 237 0.15
884 57 0.04
885 144 0.09
886 7 0.00
888 1 0.00
889 1 0.00
893 1 0.00
894 1 0.00
895 10 0.01
896 101 0.06
897 163 0.10
898 3 0.00
900 1 0.00
901 2 0.00
902 44 0.03
903 340 0.21
904 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
GGCATTGGGGTTCCGAGATCGAGGGGGGCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCTCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGCAGGATCGACAGCATGTAGAGGGGGA
CCCGACCGATCCCCGGCTTGCACATCCCGCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGTACGGAGTTCATTCCCAGTCTAAGATCGAAACAGATCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGAGGCACCATCG
TCGGAGCATCACCGGAGAACCTGACCGGC
Found at i:14716397 original size:26 final size:26
Alignment explanation
Indices: 14716368--14716420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14716358 CTGATCCGAT
*
14716368 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGCATG
14716394 CTTACACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
14716420 C
1 C
14716421 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:14717290 original size:904 final size:903
Alignment explanation
Indices: 14715514--14720722 Score: 7270
Period size: 904 Copynumber: 5.8 Consensus size: 903
14715504 GGGGGGTGTG
* * * * * * *
14715514 TGCCTTAGTCAGCCCAGGAAATGAGCGTCCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * **
14715579 GTCGGGGATCGACCAGGTCCCCCTCTACGTGC-AGCCAATCCTGCTGA-CGTAACCCTCGGTCCA
66 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA-CCGATCCTACT-ACCGCAACCCTCGGTCTG
** *
14715642 GTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGACCGGGCGGGC
129 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * * *
14715707 CGGCGGGCT-GGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCATTGATCGATAGGGTGGT
194 GGGCGGG-TGGGCACTACG-CCGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
14715771 AGGTGGGTTTAGGCACATCTTCTTATTTTTGCATGCCGATGCCATTTTTATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
14715836 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
322 TACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* * * * *
14715901 AA-TTTTCAAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTTCAGAAGGAGTTTTGGTCCCA
387 AATTTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
14715965 AACTTGGTAGACATGATCCTTGTATTTTT-TTTGCTATGCTCAAAAAAATTCAGCTAAAAACTCG
452 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCG
* *
14716029 AAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACT
516 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
14716094 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGG
581 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
14716159 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCGATCGCACATCATGTGCGCACACCCCCCC
646 GATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
14716224 GGCCCCCCCGATCGTCGGAACCCAAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGATGATGG
711 GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGG
* *
14716289 TGCCCCAATGAAGAAAAATACAGCACCAACAAATACCCGAGCCAAGCATGTGCTGCCGCAACCCT
775 TGCCCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
14716354 CGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGCA
840 CGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
14716418 TGCCTAAGTCAACCCACGAAACGAGCCTACGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * ** *
14716483 GCCGGGGATCGATCGGATCCCCCTCTGCGTGCTACCGATCCTACTACCACAACCCTTTGTCAGGT
66 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGT
** * ** * * *
14716548 -TCGATCTTAGACTGGGAATGAACTCCAAATGCCTAAGACAACCGATTAAACAAGCGGGCAGTCG
131 CT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * * *
14716612 CGCGGGTGGGCACTACCCCAGCCAGAAAGATGGGATGCGCAAGCTGTGTATCGATAGGGAGGTAG
195 GGCGGGTGGGCACTACGCC-GCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
14716677 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14716742 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACAA
324 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAA
** *
14716807 TTTTTGACAA-TTTTCCCGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAA
389 TTTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14716871 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAG
454 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14716936 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
519 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
14717001 AGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTAAGGTTTGATAAGGGAT
584 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * * * *
14717066 AACGGGCCAATAGAAGGGCCAAGTACCAGCACCCATGGCAGATCATGTGCGCAGACCCCCTCTGG
649 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGG
* * * *
14717131 CCCCCCGATCGTCGAAACCCCAATGCCACCAGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGC
713 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGC
14717196 CCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
778 CCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
*
14717261 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATA
843 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
14717322 TGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCCAGCCAGAAGGGCTGGATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
14717387 GCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGTAACCCACGGGTCTGA
66 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTC-GGTCTGG
** * * *
14717452 TCCAATCTTAGATTGGGAATGAAGTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCG
130 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
14717517 GGCGGGTGGGCACTACGCCGCCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
195 GGCGGGTGGGCACTACGCCG-CCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
14717582 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14717647 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACAA
324 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAA
** *
14717712 TTTTTGACAA-TTTTCCCGGTTCGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAA
389 TTTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14717776 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAG
454 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
14717841 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
519 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
14717906 AGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTAAGGTTTGATAAGGGAT
584 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * * *
14717971 AACGGGCCAATAGAAGGGCCAAGTACCAGCACCCATGGCACATCATGTGCGCATACCCCCTCTGG
649 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGG
* *
14718036 CCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGC
713 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGC
14718101 CCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
778 CCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
*
14718166 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATA
843 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * *
14718227 TGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCCAGCCAGAAGGGCTGGATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
14718292 GCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGTAACCCACGGTCTGAT
66 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGT
** * * *
14718357 CCAATCTTAGATTGGGAATGAAGTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGG
131 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
*
14718422 GCGGGTGGGCACTACGCCGCCCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
196 GCGGGTGGGCACTACGCCG-CCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
14718487 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
260 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
14718552 AATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGAT
325 AATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAAT
* **
14718617 TTTTGA-AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTATGAACCAAA
390 TTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAA
* * ** *
14718680 CTTGGTAGACATGATCCTTGTATTTCTT-TTGGCAAGCACAAAAAACTTTGGCTAAAAGCTCGAA
454 CTTGGTAGACATGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
14718744 GTGTACAAGATTTTGTGAGCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGG
518 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
14718809 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
583 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
*
14718874 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
648 TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * * *
14718938 CCCCCCTGATCGTCGGAACCCTAATGCCGCGGGTTAGGTTCTCC-AGCGATGCTTCGACGATTGT
713 CCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGT
* *** ** * * *
14719002 GCCCCGACGAAGAAAAATGTGGCACCAACACGTGCCCGAGCCCAGCATGTGCTGTCGTAACCCTC
776 GCCCCAACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * *
14719067 AATTCGATCCGATCTTAGACTGGGAATGAAATCTGTATGCTTAGATTGGGAATGAACTCCGTA
841 GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * ** *
14719130 GGCCTATGTCCACCCACGAAACGAGCGTGCGGGTGCTCAATCGGCCAGAGGGGCGGGATGTGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * * *
14719195 GTCAGAGATC-ATCCGGGTCCCCCTCTACGTGTTACCGATCCTACTGCCACAACACTTGGTCTGG
66 GCCGGGGATCGAT-CGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGG
* * * * *
14719259 TCTGATCTGAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGTGGACGGGCG
130 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
** * * * *
14719324 GGC----GAACACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATGGGGTGGTAG
195 GGCGGGTGGGCACTACG-CCGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
14719385 GTAGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14719450 CAATGGT-CCTTCAAGCTTTCACCTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACG
324 CAATGGTCCCTT-AAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACA
** * *
14719514 ATTTTTG-CAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTATCGGAAGGAGTTTTGGACCCAA
388 ATTTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
14719578 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
453 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
14719643 GTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGG
518 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
14719708 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
583 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * *
14719773 T-AGGAGGCGAATATAAGGG-CAGACTACCAGCACCCATCGCACATCATGTGCACACACCCCACC
648 TAAGG-GGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CC
** * * *
14719836 CCGGCCCCCCGATCGTCGGAACATCAATTCCGTCTGTCA-G------G-T--T-CTCCGACGATG
709 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATG
* * * * *
14719890 GTGCCCCGACGAAGAAAAATTC-GACACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACC
774 GTGCCCCAACGAAGAAAAATACAG-CACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACC
* ** * * * * *
14719954 CTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCGGC
838 CTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
14720019 A
903 A
* * * *
14720020 TGCCTAAGTCAACTCACGAAACGAGAGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGGATACGCA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGC-GGGATGCGCA
** ** * * * *
14720085 AGCTAGGGATCGGCCAGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGG
65 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGG
* * *
14720150 TCTGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCG
130 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * * * *
14720215 GACGGGCGGGCACTACGCCCGCCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTTG
195 GGCGGGTGGGCACTACG-CCGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
14720280 GTGGGTTTAGGCACATCTACATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * **
14720345 AAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCCTTTTCTATTTTTCATGA
324 CAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAA
* * * * * * * *
14720410 TTTTCGA-AGCTTTTTACGGTTCAGGATTTTTTCAAATTTTTTTGGAAGTAGTTTTGGCCTCAAA
389 TTTTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
14720474 CTTGGTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAG
454 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
14720538 TGTACAAGATTTTGTGACCACTTGAAAAATGTGTCCTCATTTCAGACACTTTAATGGCTACTGGC
519 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* **
14720603 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
584 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
14720668 -AGGAGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
649 AAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
14720723 AACCTGTAAA
Statistics
Matches: 3901, Mismatches: 366, Indels: 86
0.90 0.08 0.02
Matches are distributed among these distances:
889 1 0.00
890 168 0.04
891 119 0.03
894 210 0.05
895 241 0.06
896 4 0.00
898 10 0.00
899 443 0.11
900 7 0.00
901 23 0.01
902 23 0.01
903 332 0.09
904 1430 0.37
905 890 0.23
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
GCGGGTGGGCACTACGCCGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATT
TTTGACAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAA
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCC
AACGAAGAAAAATACAGCACCAACAAATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
Found at i:14717301 original size:26 final size:26
Alignment explanation
Indices: 14717272--14717324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14717262 CCGATCCGAT
*
14717272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14717298 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14717324 C
1 C
14717325 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14718206 original size:26 final size:26
Alignment explanation
Indices: 14718177--14718229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14718167 CCGATCCGAT
*
14718177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14718203 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14718229 C
1 C
14718230 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14720022 original size:26 final size:26
Alignment explanation
Indices: 14719970--14720022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14719960 TTGGTCCGAT
*
14719970 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGCATG
*
14719996 CTTAGATTGGGAATGAACTCGGCATG
1 CTTAGATTGGGAATGAACTCCGCATG
14720022 C
1 C
14720023 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGCATG
Found at i:14721023 original size:26 final size:26
Alignment explanation
Indices: 14720987--14721039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14720977 CCAGTCTGAT
*
14720987 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14721013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14721039 C
1 C
14721040 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14721929 original size:26 final size:26
Alignment explanation
Indices: 14721878--14721930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14721868 TCGGTCCGAT
* *
14721878 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
14721904 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
14721930 C
1 C
14721931 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:14723549 original size:27 final size:28
Alignment explanation
Indices: 14723515--14723571 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
14723505 AGTCGATCTT
*
14723515 AGACTGGGA-ATGAACTCCGTATGCTTA
1 AGACTGGGACATGAACGCCGTATGCTTA
14723542 AGACTGGGACATGAACGCCGTATGCTTA
1 AGACTGGGACATGAACGCCGTATGCTTA
14723570 AG
1 AG
14723572 TCAACAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (28 bp):
AGACTGGGACATGAACGCCGTATGCTTA
Found at i:14724067 original size:885 final size:890
Alignment explanation
Indices: 14721967--14724457 Score: 3306
Period size: 885 Copynumber: 2.8 Consensus size: 890
14721957 CGGGTGCTCA
* *
14721967 GCCGGCCAGAGGGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** * * *
14722032 CTTCATATTTCTGTGTGCCAATGCCGTTTTTATGGCTTGTAAATTCGTACAATGGTGCCTTAAGC
66 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
14722097 CTTCGCGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTAGATACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTTA-AAACTTTTTA
* * * * *
14722162 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATAC
194 CGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* ** * * * *
14722227 TTATATTGTTGTTGAAATGCAGAAAACAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGA
259 TTGTATTGTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
14722292 CCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
324 CCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAAT
* * **
14722357 CTCAAATGCTCTTTAAGGGGCTGTGAGTTATCGAGGTTTGATGAAGGATAGGGGATCAATATAAG
388 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAG
* *
14722422 GGCCAAGTACCAGCAGCCATCGCACATCATGTTCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
453 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
* *
14722487 CCCCAATGCCGCCTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
518 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CGACGATGGTG-CCCGATGAAGAAAAATA
** *
14722552 CGGCACCAACACATGGCC-GAGCCCAGCATGTGCTACCGCAACCC-CCG-G-TCCGGTCCGATCT
581 C-GCACCAACACAT-GCCTGAGCCCAGCATGTGCTGTCGC-ACCCTCGGTGTTCC-GT-CGATCT
** ** **
14722613 TAGACTGAGAATGAACTCTATATGCTTAGACTGGGAATTAACTTTGTATGCCTAAGTCAACCCAC
641 TAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACAAAC
*
14722678 GAAATGAGCGTGCCGGTGCTCAACTGGCCAGAGGGGCGGGCTGCGCAAGCTGGGGATCGACCGGG
706 GAAACGAGCGTGCCGGTGCTCAACTGGCCAGAGGGGC-GGC-GCG-AA-CT---GA-CGACCGGG
* * * * * * *
14722743 TCCCCCTCTACGCGGTACCGATCTTGCTGCTATAACCCTCAGTCCGATCTGATCTTAGACTGGGA
763 TCCACCTCTACGCGCTACCGATCTTGCTACCAAAACCCTCAGTCCGATCTCATCTCAGACTGGGA
* *
14722808 ATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCGGGCAGGCACTAC
828 ATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGC--GGGCGAGCAGGCACTAC
* * ** * *
14722873 ACCGGCCAGAGAGACGACATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
14722938 CTTCAT-TTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
66 CTTCATATTTT-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
14723002 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCTCTTTTTCACGATTTTGGAAACTTTTTA
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTCTATTTTTCACGATTTT-AAAACTTTTTA
*
14723067 CGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
194 CGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
14723132 TTGTATTGTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGA
259 TTGTATTGTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
14723197 CAATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAACAAACC-GTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATC
* * *
14723261 TCAAATGCTC-TTAAGGGGGTGTGACTTCTCGAGGATTGATGAAGGATAGGGGGCCAATATATGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGG
** * *
14723325 GAAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAAC
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
*
14723390 CCCAATGCCGCCGGTC-GGTTCTTCCGACGATGCTCGACGATGGTGCCCGATGAAGAAAAATGCA
519 CCCAATGCCGCCGGTCAGGTTC-TCCGACGATGCTCGACGATGGTGCCCGATGAAGAAAAATAC-
* * *
14723454 GCACCAACACATGCCTAAGCCCGGCATGTCCTGTCGCACCCTCGGTGTTCCAGTCGATCTTAGAC
582 GCACCAACACATGCCTGAGCCCAGCATGTGCTGTCGCACCCTCGGTGTTCC-GTCGATCTTAGAC
* * * *
14723519 TGGGAATGAACTCCGTATGCTTAAGACTGGGACATGAACGCCGTATGCTTAAGTCAACAAACGAA
646 TGAGAATGAACTCCGTATGCTT-AGACTGGGA-ATTAACTCCGTATGCCTAAGTCAACAAACGAA
* * *
14723584 ACGAGCGTGCGGGTGCTCAGCTGGCCAGA-GGGC-G-G-G-A-T-A-G-GCGGGTCCACCTCTAC
709 ACGAGCGTGCCGGTGCTCAACTGGCCAGAGGGGCGGCGCGAACTGACGACCGGGTCCACCTCTAC
* * ** * * *
14723640 GTGCTACCGATCCTT-CTACCAAAACCTTTGGTCTGGTC-CATTCTCAGACTGGGAATGAACTTC
774 GCGCTACCGAT-CTTGCTACCAAAACCCTCAGTCCGATCTCA-TCTCAGACTGGGAATGAACTCC
* * *
14723703 GTATGCCTAAGCCAATCGACGAAA-GAGCGGGAGGAGC-GGC-AGCGGGCACTAC
837 ATATGCCTAAGCCAACCGACGAAACGAGCGGGAGG-GCGGGCGAGCAGGCACTAC
*
14723755 GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACAT
1 GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
14723820 CTTCATATTTTTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTTAAG
66 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAG
*
14723885 CCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTT
130 CC-TTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTT-AAAACTTTT
* ** *
14723950 TACGGTTCGGGATTTTTTAAATTTTTTTTGGAAGGATTTTTGGATCCAAACTTGGTAGATGCT-A
192 TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG-TGA
* * *
14724014 TCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAACTAAAAACTCGAAGTGTAGAAGATTTTG
256 TCCTTGTATTGTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTG
* *
14724079 TGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTATAAA
321 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAA
*
14724144 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
386 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATA
* * * *
14724209 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTGGCCCCCCCGATCTTCGA
451 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGG
* * *
14724274 AACCCCAGTGCCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTACCCCGATGAAGAAAAA
516 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC-GACGATGGT-GCCCGATGAAGAAAAA
* * * * * *
14724339 TACGACACCAACAGATG-CTCGAGCCCAGCATGTGCTGTCGTAACCTTCGATCTGACC-T-GATC
579 TACG-CACCAACACATGCCT-GAGCCCAGCATGTGCTGTCG-CACCCTCGGTGT-TCCGTCGATC
* *
14724401 TTAGACTGTGAATGAACTCCGTATGCTTAGTCTGGGAATTAACTCCGTATGCCTAAG
640 TTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAG
14724458 CCGACCGATG
Statistics
Matches: 1403, Mismatches: 156, Indels: 72
0.86 0.10 0.04
Matches are distributed among these distances:
882 120 0.09
883 14 0.01
884 30 0.02
885 209 0.15
886 117 0.08
887 146 0.10
888 48 0.03
889 47 0.03
890 8 0.01
891 2 0.00
893 1 0.00
895 1 0.00
897 1 0.00
898 1 0.00
899 7 0.00
900 47 0.03
901 47 0.03
902 151 0.11
903 69 0.05
904 31 0.02
905 165 0.12
906 141 0.10
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (890 bp):
GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTCTATTTTTCACGATTTTAAAACTTTTTACG
GTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTGTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGACGATGGTGCCCGATGAAGAAAAATACGCAC
CAACACATGCCTGAGCCCAGCATGTGCTGTCGCACCCTCGGTGTTCCGTCGATCTTAGACTGAGA
ATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACAAACGAAACGAGCG
TGCCGGTGCTCAACTGGCCAGAGGGGCGGCGCGAACTGACGACCGGGTCCACCTCTACGCGCTAC
CGATCTTGCTACCAAAACCCTCAGTCCGATCTCATCTCAGACTGGGAATGAACTCCATATGCCTA
AGCCAACCGACGAAACGAGCGGGAGGGCGGGCGAGCAGGCACTAC
Found at i:14724439 original size:26 final size:26
Alignment explanation
Indices: 14724400--14724452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14724390 CTGACCTGAT
*
14724400 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14724426 CTTAGTCTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14724452 C
1 C
14724453 CTAAGCCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14727565 original size:26 final size:26
Alignment explanation
Indices: 14727527--14727579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14727517 CCGGTCTGAT
* *
14727527 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14727553 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14727579 C
1 C
14727580 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14727867 original size:843 final size:858
Alignment explanation
Indices: 14725962--14730156 Score: 3998
Period size: 843 Copynumber: 4.7 Consensus size: 858
14725952 TGTGCTACTG
* * * * *
14725962 CAACCGTCGGTCTGGTCCGATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * * * * *
14726027 ACGAGCG-GGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC-TAAGCCATGGATCG
66 ACGAGCGAGGCGGGC--G-G-GTATTACCT-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
14726090 ATAGGTTAGTAGGTGGGTTTAGGCACATCTTCAAATTTCTAGGTGCCAATGCCATTTTTATGGCT
126 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
* * * * *
14726155 TGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
191 TGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAACACGACTCGTTTTC
* * * *
14726220 TATTTTTCACGATTTTTCAAACTTTTTACAGTTCAAGATTTTTTTAAATTTTTTC-GAAAGGAGT
256 TATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGT
* ** * ** * * *
14726284 TTTGGCCCCAAACTTGGTAGACGTTCTCCTTGTATTTTTGTTGAAATGTACAAAAAAATCAGCTA
320 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAATTCAACTA
* ** *
14726349 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAA
385 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA--GTCCTCAAAT--G-CACTTTAA
* *
14726414 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
445 TGG---CTGG-AG---A--TG-------T-AAATGTTCTTT-AGAGGTGTGA--T-TCGAGG--T
* * * * * * *
14726479 GGTGAGGGATAGGGGGCCAATATGAGGGCCATGTACTAGCACCCATCGCACATTATGTGTGCACA
487 GATAAGGG--A---GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
14726544 CCCCCTCGGCCCCCTCGATCACCGGAACCCTAATGTCGCCGGTCAAG-T-T----C-A--C-C-G
547 CCCCC-CGGCCCCC-CGACCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTG
* * * * * * * * *
14726598 GCGATGGTGCCCCGACGAACAAAAATGCGACACCAGCACATGCACGAGCACAGAATGCACTACCG
610 GCGACGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGCGCTGCCG
* ** * * * * *
14726663 CAACCCTCAATTCGGTCCGATCCTAGA-TCGGAAATGAACTCCATATGCTTAGACTGGGAATGAA
675 TAACCCTCGGTTCAGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
* ** * * * ***
14726727 CTCCATATGCCTAAGTCAACCCACGAAATTAGCGTAGGGGCGCTCAGCCAGCCAGAGGGGCAATA
739 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-GTGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * *
14726792 TGCGCAAGCCGGGGATCGCTCGGATCCCCCACTGCGTGCTGTCGATCCTGCTGCCA
803 TGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCA
* * * * * *
14726848 CAACCCTCGAT-TCGATCTGATCATAGACTGGAAATGAACTCTGTATGCCTAAGCCAACTGACAA
1 CAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
* * * * * * *
14726912 AACGAACGA-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAAGCACAAGCCGTGGATCGATA
65 AACGAGCGAGGCGGGCGGGTATTACCT-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
14726976 GGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
* * * *
14727041 AAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGATGACTCATTTTTTAT
194 AAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAACACGACTCGTTTTCTAT
* * *
14727106 TTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATCTTTTAAAATATTTTCGGAAGGAGTTTTG
259 TTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* ** * * *
14727171 GCCCCAAACTTGGTAAATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAATTCAAAT-AAAA
324 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAATTCAACTAAAAA
* *
14727235 CTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAA-T-CTCAAATGCTCTTTAA-GG-T-G-G
389 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCCTCAAATGCACTTTAATGGCTGGAG
*
14727294 -TGT-AA-GTTC-TT-GAGGTTTGA-T-GAGG-GAT-AGGGA-GCCAATATAAGGGCCAAGTACC
454 ATGTAAATGTTCTTTAGAGGTGTGATTCGAGGTGATAAGGGAGGCCAATATAAGGGCCAAGTACC
* * *
14727349 AGCACCCATCGCACATAATGTGCGCACACCCCCCCAGCCCCTCCGACCACCGGAACCCCAATG-C
519 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGACCACCAGAACCCCAATGCC
* * * * *
14727413 TTCCGGTCAGGTTCTCCGACGATGCTCTAGCGACGGTGCCCCGACAAAGAAAAATACGGCACCAG
582 GT-CGGTCAGGTTCTCCGACGATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATGCGGCACCAA
* * * * * *
14727478 CACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCGGTCTGATCTTAGGCTGGGAATG
646 CACATGCTCGAGCCCAGCATGCGCTGCCGTAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATG
*
14727542 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGC
711 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-
* *
14727607 TGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCTCTCTACGT
775 TGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGT
**
14727672 GCTACCGATCCTGCTACCA
840 GCTGTCGATCCTGCTACCA
* * * * * *
14727691 CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATCAGCTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
14727756 ACGAGCG-GGGGGGAGGGTATTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAT
66 ACGAGCGAGGCGGGCGGGTATTAC-CTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * **
14727820 GGTGATAGGTGGGTCTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
* *
14727885 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATT
195 AATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAACACGACTCGTTTTCTATT
* * * * * *
14727950 TTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAATGCGTTTTGG
260 TTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
14728015 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAGAAAATTTCAGCTAAAAA
325 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACA-AAAAATTCAACTAAAAA
* *
14728080 CTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTCAA-ACACTTTAATGG
389 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA--GTCCTCA----AATGCACTTTAATGG
* *
14728144 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
448 ---CTGG-AG---A--TG-------T-AAATGTTCTTT-A-GAGGTGTGA--T-TCGAGG--TGA
*
14728209 TGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
489 TAAGGGA-----GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** * * * *
14728274 CCCCGGCCCCCCCGATCGTCAGAACCGCAATGCCGTCGGTCAGGTTCTCTGACGATGCACTGCCG
549 CCCCGG-CCCCCCGACCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCG
** * * *
14728339 ATTGTGCCCCAATGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAA
613 ACGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGCGCTGCCGTAA
* * * *
14728404 CCCTAGGTACAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTAC
678 CCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC
* ** * *
14728469 GTATGCCTAAGTTAACCCATAAAACGAGCGTGCGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGC
743 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * ***
14728534 AAGTCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTATTG
808 AAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCA
* * * * * * *
14728585 TAACCCTTGGTCCGGTCCGATCTTCGATTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGAA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* **** * * *
14728650 ACGAGCAGGCGGGCGGGCGGGCGGGCACCATGTCGACCAGAGAAACGGGATGCGCAAGCTGTGGA
66 ACGAGC--G-AGGCGGGCGGG-TATTACC---TAG-CCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
14728715 TCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTATGTGCCAATACCATTTTTATG
123 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
* * *
14728780 GCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGT-GACACGACTCGT
188 GCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GTCAACACGACTCGT
* * * *
14728844 TTTCTATTTTTCATGA-TTTGAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAATG
252 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG
*
14728908 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAGAAAATTCCA
317 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAATT-CA
* * * **
14728973 GCTAAAAACTC-AAGGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACAC
381 ACTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAA--GTCCTCAAAT--G-CAC
*
14729037 TTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCG
440 TTTAATGG---CTGG-AG---A--TGT-AAATG-----T--TCTTT-A-GAGGTGTGA-TT--CG
*
14729102 AGGTTTGATAAGGGATTGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTG
483 AGG--TGATAAGGGA-----GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
14729167 CGCACACCCCCTGGCCCCCCTGACCGTCAGAACCCCAATGTCGTCAGTCAGGTTCTCCGACGATG
541 CGCACACCCCCCGGCCCCCC-GACCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * * *
14729232 CTCCGGCGACGGTGCCCTGGCGAAGAAAAATGTGGAACCAACACATGCTCGAGCCCAGCATGCGC
605 CTCTGGCGACGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGCGC
* * *
14729297 TGCCGTAACCCTTGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTACGAA
670 TGCCGTAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
* *
14729362 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGCCGGCAAGAGGGGC
735 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT-GGTGCTCAGCCGGCCAGAGGGGC
** * **
14729427 GGGATGTTCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTG
799 GGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCA
* * *
14729487 CAACCCTCGGTCTGATCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
14729552 ACGAG-GAGGCAGGCGGGTACTATACC-AGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATA
66 ACGAGCGAGGCGGGCGGGTA-T-TACCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * ** *
14729615 GGGTGGTAGGTGGGTTTAGGCATATCTTCATTTTTCTATGTGCCGATGCCATTTTTATATCTTGG
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGT
* * *
14729680 AAATTCA-AACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTA
194 AAATTCATAA-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAACACGACTCGTTTTCTA
* * * *
14729744 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTT
258 TTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
*
14729809 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGTATGCACAAAAAAATT-AAGCTAA
323 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAA-CTAA
* * * **
14729873 AAACTGGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
386 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA--GTCCTCA-AAT-G-CACTTTAAT
* *
14729938 GGCTACTGGCAGCAAATTTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
446 GG---CTGG-AG---A--TG--------TAAATGTTCTTT-A-GAGGTGTGA--T-TCGAGG--T
*
14730003 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
487 GAT-AA-G---GGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
14730068 CCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCG
547 -CCCCCCGG-CCCCCCGACCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTG
*
14730133 GTGACGGTGCCCCGACGAAGAAAA
610 GCGACGGTGCCCCGACGAAGAAAA
14730157 GTATGGAACC
Statistics
Matches: 2814, Mismatches: 363, Indels: 254
0.82 0.11 0.07
Matches are distributed among these distances:
832 1 0.00
833 76 0.03
834 7 0.00
835 1 0.00
837 1 0.00
839 5 0.00
840 3 0.00
842 2 0.00
843 466 0.17
844 74 0.03
845 39 0.01
848 8 0.00
849 4 0.00
850 2 0.00
851 3 0.00
852 9 0.00
853 4 0.00
854 1 0.00
857 1 0.00
858 1 0.00
860 1 0.00
861 2 0.00
866 2 0.00
867 1 0.00
869 1 0.00
870 1 0.00
873 1 0.00
874 2 0.00
875 8 0.00
876 4 0.00
877 2 0.00
878 4 0.00
879 1 0.00
880 7 0.00
882 68 0.02
883 239 0.08
884 3 0.00
885 5 0.00
886 64 0.02
888 3 0.00
889 5 0.00
893 2 0.00
894 401 0.14
895 384 0.14
896 86 0.03
897 8 0.00
898 18 0.01
899 7 0.00
900 16 0.01
901 461 0.16
902 297 0.11
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (858 bp):
CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
ACGAGCGAGGCGGGCGGGTATTACCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTCAACACGACTCGTTTTCTATTT
TTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
CCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAATTCAACTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCCTCAAATGCACTTTAATGGCTGGAGAT
GTAAATGTTCTTTAGAGGTGTGATTCGAGGTGATAAGGGAGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGACCACCAGAACCCCAATGCCGTCG
GTCAGGTTCTCCGACGATGCTCTGGCGACGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
GCTCGAGCCCAGCATGCGCTGCCGTAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGTGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTC
GATCCTGCTACCA
Found at i:14728451 original size:26 final size:26
Alignment explanation
Indices: 14728422--14728474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14728412 ACAGTCCGAT
*
14728422 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14728448 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14728474 C
1 C
14728475 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14729352 original size:26 final size:26
Alignment explanation
Indices: 14729323--14729372 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14729313 TCAGTCCGAT
**
14729323 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTACGAATGAACTCCGTAAG
14729349 CTTAGACTACGAATGAACTCCGTA
1 CTTAGACTACGAATGAACTCCGTA
14729373 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTAAG
Found at i:14730029 original size:895 final size:893
Alignment explanation
Indices: 14727268--14730166 Score: 4116
Period size: 901 Copynumber: 3.2 Consensus size: 893
14727258 ACCATTTGAA
* * * * *
14727268 AAAATCTCAAATGCTCTTTAAGGTGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
* * *
14727333 ATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCGCACACCCCCCCAGCCCCTCCGACCA
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGACCA
* * * ** *
14727398 CCGGAACCCCAATG-CTTCCGGTCAGGTTCTCCGACGATGCTCTAGCGACGGTGCCCCGACAAAG
131 TCAGAACCCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCCGACGAAG
* * * * * * *
14727462 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGG-CCGGTCTGA
195 AAAAATACGGAACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGGTACAGTCCGA
*
14727526 TCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
260 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* *
14727591 CTCGAAACGAGCGTGCTGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGT-AAGCCGAGGATCGAT
325 CACGAAACGAGCGTG-TGGTGCTCAGCCGGCCAGAGGGGCGGGATG-TTCAAGCCGAGGATCGAT
* ** ** *
14727655 CGGGTCCCTCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACT
388 CGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * * * * *
14727720 GGGAATCAGCTCCGTATGCCTAAGCCAACCGATGAAACGAGCG-GGGGGGAGGGTA-TTACGCTA
453 TGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAG-GAGGCGGGCGGGTACTTAC-C-A
* * * *
14727783 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGATAGGTGGGTCTAGGCACATCTTC
515 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTC
**
14727848 ATATTTT-TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
580 AT-TTTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
14727912 CACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
644 CACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * *
14727977 TTTGGGATTTTTTTAAATTTTTTCAGAATGCGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
709 TTCGGGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* *
14728042 TATTTTTATTGGCATGCACAGAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCA
774 TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT-GAAGTGTACAAGATTTTGTGATCA
* *
14728107 TTTGAAAAAAGTGTCCTCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
838 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
14728163 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
* *
14728228 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGACCA
* * * * * ** * *
14728292 TCAGAACCGCAATGCCGTCGGTCAGGTTCTCTGACGATGCACTGCCGATTGTGCCCCAATGAAGA
131 TCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCCGACGAAGA
* *
14728357 AAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGGTACAGTCCGAT
196 AAAATACGGAACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGGTACAGTCCGAT
* * *
14728422 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCC
261 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * * *
14728487 ATAAAACGAGCGTGCGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGACCGG
326 ACGAAACGAGCGTGTGGTGCTCAGCCGGCCAGAGGGGCGGGATGTTCAAGCCGAGGATCGATCGG
* * * * * * *
14728552 GTCCCCCTTTGCGTGCTGTCGATCCTGCTATTGTAACCCTTGGTCCGGTCCGATCTTCGA-TTGG
391 GTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTT-G
* * * ** **
14728616 GAATGAACTCTGTATGCCTAAGCCAACAGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACCAT
455 GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGGAGGCGGGC-GG-GTAC--TTACCA-
* *
14728681 GTCGACCAGAGAAACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATAT
515 ---G-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATAT
* * *
14728746 CTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGC
576 CTTCATTTTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
** *
14728811 CTTCACGTGAAGTTTCATGGTGACACGACTCGTTTTCTATTTTTCATGA--TTTGAAAACTTTTT
641 CTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTT
* *
14728874 ATGGTTCGAGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACATGATC
705 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* *
14728939 CTTGTATTTTTATTGGCATGCAC-AGAAAATTCCAGCTAAAAACTCAAGGTGTACAAGATTTTGT
770 CTTGTATTTTTATTGGCATGCACAAAAAAATT-CAGCTAAAAACTGAA-GTGTACAAGATTTTGT
14729003 GATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
833 GATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
14729064 AAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGAT-AAGGGATTGGGGGCCAA
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAA-GGATAGGGGGCCAA
* * *
14729128 TATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCTGACC
65 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGACC
* * * * *
14729192 GTCAGAACCCCAATGTCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCTGGCGAAG
130 ATCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCCGACGAAG
** * * *
14729257 AAAAATGTGGAACCAACACATGCTCGAGCCCAGCATGCGCTGCCGTAACCCTTGGTTCAGTCCGA
195 AAAAATACGGAACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGGTACAGTCCGA
* *
14729322 TCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACC
260 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* *
14729387 CACGAAATGAGCGTGTGGGTGCTCAGCCGGCAAGAGGGGCGGGATGTTCAAGCCGAGGATCGATC
325 CACGAAACGAGCGTGT-GGTGCTCAGCCGGCCAGAGGGGCGGGATGTTCAAGCCGAGGATCGATC
* * *
14729452 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACTT
389 GGGTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTT
*
14729517 GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGGAGGCAGGCGGGTACTATACCAGCC
454 GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGGAGGCGGGCGGGTACT-TACCAGCC
* *
14729582 AAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATT
518 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATT
* ** * * *
14729647 TTTCTATGTGCCGATGCCATTTTTATATCTTGGAAATTCAAACAATGGACCCTTAAGCCTTCACG
583 TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
14729712 TGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
648 TGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
*
14729777 GGATTTTTTAAAATTTTTTC-GGATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
713 GGATTTTTTAAAATTTTTTCAGAAT-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* * * *
14729841 TTTTATTGGTATGCACAAAAAAATTAAGCTAAAAACTGGAAGTCTACAAGATTTTGTGACCATTT
777 TTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT-GAAGTGTACAAGATTTTGTGATCATTT
* **
14729906 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAATTTGT
841 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14729959 AAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
*
14730024 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCA
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGACCA
* * * *
14730089 TCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGCGATGCTCCGGTGACGGTGCCCCGACGAAGA
131 TCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCCGACGAAGA
* *
14730154 AAAGTATGGAACC
196 AAAATACGGAACC
14730167 TAAGTCAACC
Statistics
Matches: 1774, Mismatches: 200, Indels: 59
0.87 0.10 0.03
Matches are distributed among these distances:
893 1 0.00
894 405 0.23
895 460 0.26
896 100 0.06
897 1 0.00
898 1 0.00
899 6 0.00
900 14 0.01
901 488 0.28
902 296 0.17
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGACCA
TCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGACGGTGCCCCGACGAAGA
AAAATACGGAACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTAGGTACAGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGTGGTGCTCAGCCGGCCAGAGGGGCGGGATGTTCAAGCCGAGGATCGATCGG
GTCCCCCTCTACGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTCCGATCTTAGACTTGG
AATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGGAGGCGGGCGGGTACTTACCAGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATTTTT
CTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
ATTGGCATGCACAAAAAAATTCAGCTAAAAACTGAAGTGTACAAGATTTTGTGATCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
Found at i:14731034 original size:26 final size:26
Alignment explanation
Indices: 14731005--14731054 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14730995 ATCCGATCTG
*
14731005 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
14731031 AGACTGGGAATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
14731055 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:14731933 original size:26 final size:26
Alignment explanation
Indices: 14731897--14731948 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14731887 TCTGGTCCAA
14731897 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14731923 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14731949 GCCTAAGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:14732831 original size:26 final size:26
Alignment explanation
Indices: 14732779--14732831 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14732769 CCAGTCCGAT
* *
14732779 CTTAGACTAGGAATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
14732805 CTTAGACTAGGAATGAACTTCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
14732831 C
1 C
14732832 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:14733295 original size:890 final size:886
Alignment explanation
Indices: 14730165--14737203 Score: 7985
Period size: 866 Copynumber: 8.0 Consensus size: 886
14730155 AAGTATGGAA
* * * * * * * ** *
14730165 CCTAAGTCAACCCACGAATCAAGCGTGCGGCTGCTCAGTCGGCCAAAGGGCCAGGACACGCAAGT
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * * * ***
14730230 TGGGGATCGGTCGGGT-CCTCTTCTGCA-TGCTGCCCAACCTGCTACCGCAACCCTCGGTCCAAT
66 CGGGGATCGACCGGGTCCCCCTT-TG-AGTGCTGCCGATCCTGCTGCCACAACCCT-GGTCTGGT
* * *
14730293 CTGATCTTAGACTGAGAATGAACTCCGTATACCTAAGCCAACCGATG--A--AA--CGAGC-GGC
128 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGC
* * *
14730351 GA-GCGGGCAGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
193 GAGGCGGGCAGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
14730415 AGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATATTTATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
14730480 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATTGTTTTCTTTTTTTCAC
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * **
14730545 GATATTTGAAACGTTTTT-TGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCAACA
387 GATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
** * * *
14730609 AACTTTTTAGACGTGATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTAAGCTAAAAACTCGA
451 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14730674 AGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
14730739 GCAGCAAACCTATTACATCTCAAATGCTCATTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
14730804 ATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTAGACCCCCCTC
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-C
* * *
14730869 TGGCCCCCCCAATTGTCGGAA-CCCAATGCCGCCTGTCAGGTTCTCC-GACGATGGTGCCCCGGT
710 --G--------ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACGATGGTGCCCCGGC
** * * * *
14730932 GAAGAAAAATATGGCACCAACACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGT-CTGA
765 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-
* *
14730996 TCCGATCTGAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
829 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
14731054 CCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * * * * *
14731119 CGGGGATCGACCAAGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCCAGAACCCTTGGTCCGGTGT
66 CGGGGATCGACCGGGTCCCCCTTTGAGTGCTGCCGATCCTGCTGCCACAACCC-TGGTCTGGTCT
* * * *
14731184 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAATCGATGAAACTAACG-G-GCGGGC--
130 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGCGA
* * * * *
14731245 GG-GAG--GGCACTACGCTGGCTAGAGGGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTA-
195 GGCGGGCAGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14731306 GTGGGTTTAGGCACACCTTCATATTTCTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14731371 CATTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * ***
14731436 TTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTATCGGAGGGAGTTTTGATGCCAAA
389 TTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14731500 CTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAACACTCGAAG
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
14731564 TGTACTAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCCACTGGC
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
14731629 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
14731694 AGGGGGCCAATATAAGGGCCAAGT-CGCAACACCCATCACACATCATGTACGCACACGCCCTGGC
648 AGGGGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCACACATCATGTGCGCACA--------C
** * * *
14731758 CCCCCCGATCACCAGAA-CCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
704 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A------GACGATGGTGC
* * ** * * *
14731822 CCCGACGAAGAAAAATGTGGTGCCAACACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTTGG
759 CCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
** * *
14731887 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATG
824 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* **
14731950 CCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGAAGGATGCGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * ** *
14732015 CAGGGATTGCCCGGGTCCCCCTCT-ACATGCTGCCGAT-CTGCTGCCCCAACCCTCAATCCGGTC
66 CGGGGATCGACCGGGTCCCCCTTTGA-GTGCTGCCGATCCTGCTGCCACAACCCT-GGTCTGGTC
* * *
14732078 TGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAAC-AG-GCGGGCG
129 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGCG
* * * * * * * *
14732141 -GGTGAGCGGGCACTACACCGGCGAGAGAGACTGGATGTGCAAGCCGTGGATCAATAGGGTGGTA
194 AGGCGGGCAGGCACTAC-GCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * ** *
14732205 GGTGGGTTTAGGCACATCTTTATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTTAATTCAT
258 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14732270 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCACG
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
14732335 A-TTTTCAAACCTTTTTACGGTTTCG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCT
388 ATTTTTGAAA-CTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
14732398 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACTTCAGCTGAAAACTTGA
451 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
14732463 AGTGTACATGA-TTTGTGGCCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
14732527 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14732592 ACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG
* * * *
14732656 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAG-CGATGGTGCCCCAGTGAAGAAAAATG
711 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACGATGGTGCCCCGGCGAAGAAAAATG
* * * * *
14732720 TGGCACCAACACATGCCCGAGCCTAGTATGTGCTGCCGTAAGCCTCGGTCCAGTCCGATCTTAGA
776 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGA
* * * * *
14732785 CTAGGAATGATCTCCGTATGCTTAGACTAGGAATGAACTTCGCATG
841 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14732831 CCAAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGT
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * *
14732896 CGGGGATCGACCGGATCCCCTTTTGAGTACTGTCGATCTTGCTGCCACAACCCATGGTCTGGTCT
66 CGGGGATCGACCGGGTCCCCCTTTGAGTGCTGCCGATCCTGCTGCCACAACCC-TGGTCTGGTCT
14732961 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGAGCGGGC
130 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC--GCGAGCGGGC
* * *
14733026 GGGTAGGCGGGCAGGCACTACGTCGGCTAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGT
193 --G-AGGCGGGCAGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
14733091 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGTTTGTAAAT
254 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
14733156 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
319 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * *
14733221 CACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTCAGAAGGACTTTTGGTCC
384 CACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
14733286 CAAACTTGGTAGCCATGATCCTTGTATTTTT-TCTGGTATGCACAAAAAAATTCAGCTAAAAAAT
449 CAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
14733350 CGAAGTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTA
513 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
14733415 CTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
578 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
14733480 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAAGTGTGCACA-CCCC
643 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
* *
14733544 CCGATCGTAGGAACCCCAATGCCGCCGGTCAGGTTTTCCGACGATGCTCCGGTGATGGTGCCCCG
708 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-GA-----C---GATGGTGCCCCG
* * *
14733609 GTGAAGAAAAATGCCGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCGTCGGTCC-
763 GCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
** * *
14733673 GATCTAATCTTAGACTGGGAATGGACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
828 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
14733733 -CTAGAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAGTCGGCCAGAGGGTCGGGATGCGCAAG
1 CCTA-AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
14733797 CTGGGGATC-AGTCGGGTCCCCCTTTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTTTGGT
65 CCGGGGATCGA-CCGGGTCCCCCTTTGAGTGCTGCCGATCCTGCTGCCACAACCCT-GGTCTGGT
** * * * *
14733861 CCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCGAACCAACGAAACG-A-GCGGGCGGGC
128 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGC
* * * *
14733924 G-GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGGCTTGGATCGATAGGGTGGT
193 GAGGCGGGCAGGCACTAC-GCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
14733988 AGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
14734053 TACAATGGT--C-----CC-T-A--TG-A----C-T-------C-A----TTTTCTATATTTCAC
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
14734089 GATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGGAGGATTTTTAGCCCCA
387 GATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
14734153 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
451 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14734218 AGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
14734283 GCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
14734348 AT-GAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCC
646 ATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCC
* *** **
14734412 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACTGTTTGCGATGGTGCACCGAAGAA
710 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGAC-G-ATG-G-TGCCCCGGCGAAGAA
* * * *
14734477 AATTGCACGCA-CAACACATGCCCGAGCCTA-CATAGTGCTGCCGCAACCCTCGGTCCGAGTCCA
771 AAATGC-GGCACCAACACATGCCCGAGCCCAGCAT-GTGCTGCCGCAACCCTCGGTCC-AGTCCG
* *
14734540 ATCTTAGACT-GGAAAGAACTCCGTATGCTTAGACT-GGAATGAACTTCGTATG
833 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ***
14734592 CCTAAGTCAACCCTA-GAAAC-AGCGTGCGCTAGTGCTTCAATTGGGCCAGA-GGGCGGGATTGC
1 CCTAAGTCAACCC-ACGAAACGAGCGTGCG--GGTGC-TC-AGCCGGCCAGAGGGGCGGGA-TGC
* * ** * ** *
14734654 GCAAGCCAGGGGATCG-CCTGGTCCCCC-TTGTGTGCTATCGATCCCTGCTTG-C-GATGCCTCA
60 GCAAGCC-GGGGATCGACCGGGTCCCCCTTTGAGTGCTGCCGAT-CCTGC-TGCCACAACCCT-G
* * * *
14734715 GTCCTTGAGCTCCCGATC-T-GACT-GGAAT--ACT-AGTATGCCTAAG-CAACTGACGACAC--
121 GT-C-TG-G-T-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
14734771 A-GCGATCGGGCG-GGCGAGC-GTG--CTGC-CGCCCAGAGAGACGGGAT-CGCGAAGCCATGGA
181 ACGCGAGCGGGCGAGGCGGGCAG-GCACTACGCGGCCAGAGAGACGGGATGCGC-AAGCCGTGGA
* * ** * *
14734829 T-GATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTCCCAATGACATTTTTATG
244 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14734893 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTT
309 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14734958 TTCTATTTATCACGATTTTTGAAACTTTTTACGGTTC-AG----------A---------AA-GA
374 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* *
14735002 GTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAG
439 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
14735067 CTAAAAACTCGAAGTGTACAAGATTTTTTAACCATTTGAAAAAAGTGTCCCTATTTCAGACACTT
504 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
14735132 TAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAG
569 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
14735197 ATTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
634 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
*
14735262 CACACCCCCCCGACCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCAG-CGATG
699 CACACCCCCCCG---------ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACGATG
* * * *
14735326 GTGCCCCGACGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCC
755 GTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * *
14735391 TCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTA
820 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
14735456 TG
885 TG
* * * * * *
14735458 CCTAAGTCAACCCACGAAATGATCGTGCGGGTGCTTAGCAGGCCAGAGGGGCGGGATGTGCAAGT
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * *
14735523 AGGGGATCGGTCGGGT-CCCCTTCGACGTGCTGCCGATCCTGCTACCGCAACCCGTGGTCTGGTC
66 CGGGGATCGACCGGGTCCCCCTTTGA-GTGCTGCCGATCCTGCTGCCACAACCC-TGGTCTGGTC
** *
14735587 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAACG-G-GCGGGC-
129 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGCG
* ** * * *
14735649 AGGCGAGTGGGCACTAAGCCGGCCAGAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTA
194 AGGCGGGCAGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
14735714 GGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTGTAATTTCAT
258 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14735779 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
14735844 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTTGGAAGGAGTTTTGGCCCCAAA
388 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
14735909 CTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAACTCAGCTGAAAACTCGAAG
453 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
** * *
14735974 TGTAGTAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGT
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
14736039 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
14736104 AAGGGCCCAATATAAGGGCCAAGTACCAGTAACCATCACACATCATGTGCGCACACCCCCCCGAC
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA------C--C
* * *
14736169 CCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTTC-GACGATGGTGCCCCGGCAAAGA
705 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACGATGGTGCCCCGGCGAAGA
* *
14736233 AAAATACGGCACCAACACATGCCCGAGCACAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-T
770 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGAT
14736288 C-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG
835 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
14736324 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATACGCAAGC
1 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * *
14736389 TGGGGATCGGTCGGGTCCCCCTTTGCA-TGCTGCAGATCCTGCTGTCGCAACCCTCGATCCT-GT
66 CGGGGATCGACCGGGTCCCCCTTTG-AGTGCTGCCGATCCTGCTGCCACAACCCT-GGT-CTGGT
* * * *
14736452 CTGATCATAGACTAGGAATGAATTCCATATGCCTAAGCCAACCGACGAAAC-AA-GC-AGGCGGG
128 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGA-GCGGG
** * * * * * *
14736514 CG-GGAAGACGGGCACTACGTCGGCCAGAGAGATGGGATACGTAAGTCGTGGATCGATAGGGTGG
192 CGAGGCGGGCAGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* ***
14736578 TAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
256 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
14736643 ATACAGTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
321 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
14736708 TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
386 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
14736773 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAACTCAGCTGAAAACTCAA
451 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
** *
14736838 AGTGTAGTAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
14736903 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
** * * *
14736968 ATAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCACACACCCCTCGG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--------
*
14737033 CCCCCCCCCGATCGTCGGAACTCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTCCGGCGATGG
703 --CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-A-GA--------CGATGG
* * * * * *
14737098 TGCCCTGGTGAAGAAAAATACGGCACCAACAAATGCCCGAGCCCAGCATGTGCTGTCGCAACCTT
756 TGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* ** * * *
14737163 TGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGC
821 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14737204 CTAAGCCAAC
Statistics
Matches: 5292, Mismatches: 598, Indels: 504
0.83 0.09 0.08
Matches are distributed among these distances:
853 81 0.02
854 26 0.00
855 1 0.00
856 3 0.00
857 3 0.00
858 26 0.00
859 48 0.01
860 98 0.02
861 308 0.06
862 57 0.01
863 44 0.01
864 53 0.01
865 398 0.08
866 747 0.14
867 32 0.01
868 49 0.01
869 6 0.00
870 43 0.01
871 30 0.01
872 156 0.03
873 1 0.00
874 1 0.00
877 3 0.00
878 2 0.00
879 61 0.01
880 1 0.00
881 200 0.04
882 113 0.02
883 5 0.00
885 30 0.01
886 8 0.00
887 4 0.00
888 211 0.04
889 330 0.06
890 339 0.06
891 229 0.04
892 122 0.02
893 253 0.05
894 132 0.02
895 74 0.01
896 214 0.04
897 5 0.00
898 9 0.00
899 54 0.01
900 354 0.07
901 57 0.01
902 265 0.05
903 3 0.00
904 2 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGACCGGGTCCCCCTTTGAGTGCTGCCGATCCTGCTGCCACAACCCTGGTCTGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGCGAGCGGGCGAG
GCGGGCAGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGACGATGGTGCCCCGGCGAAGAAAAATGCGGCA
CCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
Found at i:14733717 original size:26 final size:26
Alignment explanation
Indices: 14733681--14733734 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14733671 CCGATCTAAT
* *
14733681 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14733707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14733733 CT
1 CT
14733735 AGAGTCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14734576 original size:25 final size:25
Alignment explanation
Indices: 14734542--14734592 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
14734532 CGAGTCCAAT
14734542 CTTAGACTGGAAAGAACTCCGTATG
1 CTTAGACTGGAAAGAACTCCGTATG
* *
14734567 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAAAGAACTCCGTATG
14734592 C
1 C
14734593 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAAAGAACTCCGTATG
Found at i:14735442 original size:26 final size:26
Alignment explanation
Indices: 14735406--14735458 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14735396 CCAATCTGAT
*
14735406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14735432 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14735458 C
1 C
14735459 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14737941 original size:26 final size:26
Alignment explanation
Indices: 14737890--14737942 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14737880 CCGGTTCGAT
* *
14737890 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14737916 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14737942 C
1 C
14737943 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.