Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 93 of 190
Found at i:14738818 original size:26 final size:26
Alignment explanation
Indices: 14738780--14738832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14738770 CTAGTTCGAT
14738780 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14738806 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14738832 C
1 C
14738833 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14739721 original size:26 final size:26
Alignment explanation
Indices: 14739685--14739737 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14739675 CTAGTCCGAT
14739685 CTTAGACTGGGAATGAAGTT-TGTATG
1 CTTAGACTGGGAATGAA-TTCTGTATG
14739711 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTCTGTATG
14739737 C
1 C
14739738 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCTGTATG
Found at i:14739935 original size:905 final size:901
Alignment explanation
Indices: 14737154--14743386 Score: 7887
Period size: 905 Copynumber: 6.9 Consensus size: 901
14737144 CATGTGCTGT
* * * * * * *
14737154 CGCAACCTTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACTGATG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14737219 AAATGA--GTG--GGCGGGCGGGCGGGCACTACGTCC-ACCAGAGAGACGGGATGCACAAGCCGT
66 AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * ***
14737279 GGATCGATAGGCTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
14737344 ATGGCTTGTAAATTCATACAGTGG-CTCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
14737408 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCCG-GATTTTTTCAAATTTTTTCGAA
260 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTTTCGGA
* * * * *
14737472 AAGAGTTTTAGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCCTGCATAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
*
14737537 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
14737602 ACCTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
14737667 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * * * * * *
14737732 TGCGGACA-CCCCCCGGCAACCCCGATCGTCGGAACCCAAATGCCACCGGTCAGGTTCTCTGACA
584 TGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCC-GCAGTCAGGTTCTCCGGCG
* * * * *
14737796 ATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
648 ATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* * ** * * *
14737861 TGCTGTCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGGATGAACTCCT-TATGCTTAGTCTG
713 TGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTG
* * * *
14737925 GGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGAGCCCTCAGTCGGCCAGA
777 GGAATGAA-TTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * * * *
14737989 GGGGCAAGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTAC
841 GGGGCGAGATGCGCAAGCCGGGGATC-G-CTGGTCCCCCTCTGCGTGCTGCCGATCCTACTGC
* * * * *
14738052 CACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
14738117 -AA--A---TG-A-----GTGGGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGAAAGCCATG
66 AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14738170 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGCATGCCAATGCCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
14738235 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
14738300 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTTCGGAAA
261 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* ** *
14738365 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTCACATGC-ACAAAAAATTC
326 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTC
* * *
14738429 AGCTAGAAAA-TCGTAGTGTACAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCATACA
391 AGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14738493 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGATGTGAGTTCTT
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
14738558 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
14738623 GCGCACA-CCCCCCGGCCCCTCTGATCA-CTGGAACCCCAATGCCGTCAGTCAGGTTCTCCAGCG
585 GCGCACACCCCCCCGGCCCCCCCGATCATC-GGAACCCCAATGCCG-CAGTCAGGTTCTCCGGCG
* * * * * * * *
14738686 ATGCTCCGGCGATGGTG-CGCTAGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCAT
648 ATGCTCCAGTGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * *
14738750 GTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTT
712 GTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
* * * * *
14738815 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTTAGCCGGCCAGAG
777 GGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
14738880 GGGCTG-GATGCGCAAGTCGGGGATCAATCGGGTCCCCCTCTGCGTGCTGTCGAT-CTGACTGT
842 GGGC-GAGATGCGCAAGCCGGGGATC--GCTGGTCCCCCTCTGCGTGCTGCCGATCCT-ACTGC
* * * ** *
14738942 CACAACCCTCAGTCTGATATGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14739007 AAACGAGCGGGCAGACAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATG
66 AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
14739072 GATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGTCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
14739137 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGATTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
14739202 TTTTCTATTTTTCAAGATTTTTGAAACTTTTTGGGGTTTGAGATTTTTTAAAATTTTTTCAGAAG
261 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
*
14739267 GCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATT
326 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAATT
*
14739332 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCGGGAC
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGAC
*
14739396 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
14739461 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCA-G
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
14739525 TGCGCACACCCCCCCGGGCCCCCCCGATCATCGGAACCCCAATGCCGCAAGTCAGGTTCTCCGGC
584 TGCGCACACCCCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGC-AGTCAGGTTCTCCGGC
* * * *
14739590 GATGCTCCAGTGATGCTACCCCGACAAAGAAAAATGCGGCACCAACACATACCCGAGCCCAGCAT
647 GATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
* * * *
14739655 GTACTGCCGGAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAAGTTTGTATGCTTAGACTG
712 GTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
* * * *
14739720 GGAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAT
777 GGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** ** *
14739785 GGGCGAGATGCGCAAGCCGGGGATCAGCTGAATCCCCCTCTATGTGCTGTTGATCCTACTAC
842 GGGCGAGATGCGCAAGCCGGGGATC-GCTG-GTCCCCCTCTGCGTGCTGCCGATCCTACTGC
** *
14739847 CGCAACCCTCAATCTGCTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * * * ***
14739912 AAACGAACAGGCGGGCGGGTGGGCGGCCACTACGCCGACCAGAGAGATGGGATGCACAAGTTATG
66 AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14739977 GATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14740042 TGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGATGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
14740107 TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCAGTTCGAGATTTTTTAGCACTTTTTT-GGAA
261 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTA-AAATTTTTTCGGAA
* * *
14740171 GGA-TTTCAT-GCCCCAAACTTGATAGACGTGATCCCTGTATTTTTGTTGGCAGGCAAAAAAAAA
325 GGAGTTT--TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
14740234 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
14740299 CACTTTAATTGCTTCTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
14740364 TTGCGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCTATCACACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
14740429 GTGCGCACACCCCACCCGGCCCCCTCGATCACCGGAACCCTAATGCCACCGATCAGGTTCTCCGA
583 GTGCGCACACCCC-CCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCAG-TCAGGTTCTCCGG
* * *
14740494 CGATGCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGACACCAACACATGCC
646 CGATGCT-C--C-A-G-T-----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * * * *
14740559 TGAGCCCAGCATGTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
700 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGT
*
14740624 ATGCTTAGACTGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
765 ATGCTTAGACTGGGAATGAA-TTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * *
14740688 CAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGAGATCGGTCAGGTCCCCCTCTGCGTGCTGCCG
829 CAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC-G-CTGGTCCCCCTCTGCGTGCTGCCG
*
14740753 ATCCTACTGT
892 ATCCTACTGC
* * **
14740763 CGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAGAGACG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
14740828 AAACGAGCGGGCAGGCAGGCGGGCGGGCACTACGACGGCCAGAGAGACAGGATGCGCAGGCCGTT
66 AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * *
14740893 GATCGATAGGGTGGTAGGTGGGTTTGGGTACATCTTCATCTTTTCTGCGTGCCAATGCCATTTTT
131 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGCCAATGCCATTTTT
* ** * *
14740958 ATAGCTTGTAAATTCCGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
14741023 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCG-GATTTTTTAAAAGTTTTTT-GG
260 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-CGAGATTTTTTAAAA-TTTTTTCGG
*
14741086 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
*
14741151 TTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTCAG
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAG
* * *
14741215 ACACTTTAATGGCTACTGGCAGCAAACGTATAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14741280 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
14741345 TGTGCGCACA-CCCCCCGGCCCCCCCGA-CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGG
582 TGTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGG
* * *
14741408 CGATGCTCCGGCGATGCTCCTGCGATGGTGCCCCGGCAAAGAAAAATGCGACACCAACACATGCC
646 CGATGCT-C--C-A-G----T--GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* ** * *
14741473 TGAGCCCAGCATGTGCTGCCATAACCCTCGGTCTAGCCCGATCTTAGACTGGGAATGAACT-TCC
700 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCT-G
* ** * * *
14741537 TATGCTTAAACTGGGAATGAACCCCGTATGGCTAAGTCAACCCACGAAACGAGCGTACGGGTGCT
764 TATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * *
14741602 CAGCCGGCCAGAGGAGCGAGATGCGTAAGCCAGGGATCGGCCGGGCCCCCTTCTGTGTGCTACCA
829 CAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC-GCTGGTCCCCC-TCTGCGTGCTGCCG
* *
14741667 ATCTTGCTGC
892 ATCCTACTGC
* * * * * ** *
14741677 TGTAACCCTCGATTTGGTCCGATCTTAGACTAGGAATGAACTATGTATGCCAAAGCCAACCGACG
1 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
14741742 AAAAAAATGGGCGGGCGGGC-GGCGGGCAGGCACTACACCGACCAGAGAGACGGGATGCGCAAGC
66 ----AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
14741806 GGTGGATCGATATGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATT
127 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14741870 TTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGA
192 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14741935 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAACTTTTTCG
257 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * *
14742000 AAAGGATTTTTGGCCCCAAACTT-CTCAGACGTGATCCTT-TATTTTTTTTGGCATGCACAAAAA
322 GAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
* * * *
14742063 AATTCAGCTAAAAATTCGAAGTGTAAAATATTTT-TGACCATTTGAAAAAGGTGTCCCCACTTT-
386 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
* *
14742126 AGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14742191 TTCTCGAGGTTTGATGAGGGATAGGTGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
14742256 CATGTACGCACACGTCCCCCCCGG-CCCCCCGATCACCGGAATCCCGATACCGCCAGTCAAGTTC
580 CATGTGCGCACA---CCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCG-CAGTCAGGTTC
* * *
14742320 T-C--CGA-----C---GATGGTGCCCCGACGAAGAAAAATGCGACACCAACACTTGCCCCAGCC
641 TCCGGCGATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * * * *
14742374 CAGCATGTGCTGTCGCAACCCTCGGTC-CGATCTGATCTTGGACTGGGAATGAACTCCGTATATG
706 CAGCATGTGCTGCCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACT-C-TGTATG
* * * *
14742438 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
768 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14742503 CGGCCAAAGGGACGGGATGCGCAAGTCGGGGATCGGTCGTGTCCCCCTCTGTGTGCTACTGATCC
833 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGCT-G-GTCCCCCTCTGCGTGCTGCCGATCC
14742568 TACTGC
896 TACTGC
* * *
14742574 TGCAACCCTCGGT-TCGGTCCAATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
** * * * * *
14742638 GAAACGAGCGGGCAGGCGGGCAAGCGGGCACTACGTCGGCCAAAGAGATGGGATGCCCAAGTCGT
65 GAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
14742703 GGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATACCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
14742768 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
195 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** ** * *
14742833 GTTTTCTA-TTTTCACGATTTTCAAAACTTTTTTTGGTTCAAGATTTTTTAAAATTTTTTTGGAA
260 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * * *
14742897 GGTGTTTTGGCCCCAAACTTGGTAGACATGATCTTTGTATTTTTGTTGGCATGCACAAAACAATT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
* * *
14742962 CAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
14743027 CTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTTTT
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
14743092 GAGGTTTGCTGAGGGATAGGGGGCCAATATAAGCGCAAAGTACTAGCACCCATTGCACACCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
14743157 GCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
585 GCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGGCGA
* * * * * *
14743222 TGCTCCGGTGATGCTGCCTCGATGAAGAAAAATACGGCACCAACACATGCCCGGGCCCAGCATGT
649 TGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
* ** * *
14743287 GCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTTTGGGAATGAACTC-ATATGCTTAGACT-
714 GCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGAC--TGGGAATGAACTCTGTATGCTTAGACTG
* * *
14743350 GGAATGAACTCCGGTATGCCTAATTCAACCCAAGAAA
777 GGAATGAATTCC-GTATGCCTAAGTCAACCCACGAAA
14743387 TGCGTCTGCA
Statistics
Matches: 4682, Mismatches: 541, Indels: 218
0.86 0.10 0.04
Matches are distributed among these distances:
889 10 0.00
890 623 0.13
891 149 0.03
893 23 0.00
894 158 0.03
895 267 0.06
896 152 0.03
897 171 0.04
898 66 0.01
902 276 0.06
903 28 0.01
904 423 0.09
905 717 0.15
906 21 0.00
907 12 0.00
908 1 0.00
909 1 0.00
910 1 0.00
911 1 0.00
913 161 0.03
914 371 0.08
915 178 0.04
916 391 0.08
917 463 0.10
918 18 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCAGTCAGGTTCTCCGGCGATG
CTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
TGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GAGATGCGCAAGCCGGGGATCGCTGGTCCCCCTCTGCGTGCTGCCGATCCTACTGC
Found at i:14740504 original size:11 final size:11
Alignment explanation
Indices: 14740488--14740520 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
14740478 CGATCAGGTT
14740488 CTCCGACGATG
1 CTCCGACGATG
14740499 CTCCGACGATG
1 CTCCGACGATG
14740510 CTCCGACGATG
1 CTCCGACGATG
14740521 GTGCCCCGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14740630 original size:26 final size:26
Alignment explanation
Indices: 14740601--14740653 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14740591 CTGGTCTGAT
14740601 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
14740627 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14740653 C
1 C
14740654 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14741566 original size:26 final size:26
Alignment explanation
Indices: 14741515--14741566 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14741505 CTAGCCCGAT
* *
14741515 CTTAGACTGGGAATGAACTTCCTATG
1 CTTAAACTGGGAATGAACTCCCTATG
14741541 CTTAAACTGGGAATGAAC-CCCGTATG
1 CTTAAACTGGGAATGAACTCCC-TATG
14741567 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCCTATG
Found at i:14743880 original size:782 final size:785
Alignment explanation
Indices: 14742681--14744178 Score: 2070
Period size: 782 Copynumber: 1.9 Consensus size: 785
14742671 CGTCGGCCAA
* * *
14742681 AGAGATGGGATGCCCAAGTCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGATGGGATGCACAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATT
* *
14742746 TCTGCGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
65 TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTG
***
14742811 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCACGATTTTCAAAACTTTTTTTGGTTCAAGA
130 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCACGATTTTCAAAACTTTTGGCGGTTCAAGA
* * **
14742876 TTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCTTTGTATTTTT
195 TTTTTTAAAATTTTTTTGGAAGATGTTTTGGCCCCAAACTTGATAGACATGATCCCTGTATTTTT
* * * *
14742941 GTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGGCCATTTGAAA
260 GTTGGCAGGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAA
14743006 AAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC
325 AAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTC
* * * * * *
14743071 TTTAAGGGGGTGTGACTTTTTGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGCGCAAAGTACT
390 TTTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGCGCAAAGTACC
* * *
14743136 AGCACCCATTGCACACCATGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCC
455 AGCACCCATCGCACACCATGCGCGCACA-CCCCCCGGCCACCCCGA-CGTCGAAACCCCAATGCC
* * * *
14743201 GCCGGTCAGG-T-T-C-T-C-C-GGCGATGCTCCGGTGATGCTGCCTCGATGAAGAAAAATACGG
518 GCCGGTCAGGTTCTACATGCTCTGGCGATGCTCCGGCGATGCTGCCCCGACGAAGAAAAATACGA
* * * *
14743259 CACCAACACATGCCCGGGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTT
583 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCCGATCTTAGAC--
*
14743324 TGGGAATGAACT-CATATGCTTAGACT-GGAATGAACTCCGGTATGCCTAATTCAACCCAAGAAA
646 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT-CGGTATGCCTAAGTCAACCCAAGAAA
14743387 TGCGTCTGCAAATGCGATTAGACTATGAAATCGTATGCCAAGAGAGAAAACGACGCGTTGCGGCC
710 TGCGTCTGCAAATGCGATTAGACTATGAAATCGTATGCCAAGAGAGAAAACGACGCGTTGCGGCC
14743452 ACTACGCCGCG
775 ACTACGCCGCG
14743463 AGAGAT-GGATGCACAAGT-ATGGAT-GATA-GGTGGTA-GTGTGGTTT-GCACATCTTCATA-T
1 AGAGATGGGATGCACAAGTCATGGATCGATAGGGTGGTAGGTG-GGTTTAGCACATCTTCATATT
*
14743521 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TAATACAATGGTCCCTTAAGCCTTCACGTG
65 TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTG
* *
14743585 AAGTTT-ATGGC-AGACGACTTGTTTTCTATTTTTCATGATTTT-AAAACATTCCCTTGGCGGTT
130 AAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGATTTTCAAAAC-TT---TTGGCGGTT
* * * *
14743647 CGAGATTTTTTAGCAACTTTTTTTGGAAAGATTTTTTGGCCCCAAACTTGATAGACGTGATCCCT
190 CAAGATTTTTTA--AAATTTTTTTGG-AAGATGTTTTGGCCCCAAACTTGATAGACATGATCCCT
*
14743712 GTATTTTTTGTTGGCAGGCAAAAAAAAAATTCAGCTAAAAACATTCGAAGTTGTGCAAGA-TTTG
252 GTA-TTTTTGTTGGCAGGC-AAAAAAAAATTCAGCTAAAAAC-TT-GAAG-TGTACAAGATTTTG
*
14743776 TGACCAATTTGAAAAAA-TGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGC-AACCTGTAA
312 TGACC-ATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAGCAAACCTGTAA
*
14743839 AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAT
376 AATCTCAAATGCTCTTTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATAT
* * ** *
14743904 AAGGGCCAAGTACCAGCACCCATCGCACATTATGCGCGCACACCCCCCGGCCCCCCCGACGTCGA
441 AAGCGCAAAGTACCAGCACCCATCGCACACCATGCGCGCACACCCCCCGGCCACCCCGACGTCGA
* *
14743969 AACCCCAATGCCGTCGGTCAGGTTCTCTAGCGATGCTCTGGCGATGCTCCGGCGATGGTGCCCCG
506 AACCCCAATGCCGCCGGTCAGG-T-TCTA-C-ATGCTCTGGCGATGCTCCGGCGATGCTGCCCCG
* ** * *
14744034 ACGAAGAAAAGTGTGACACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
567 ACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
14744099 GCCCGATCTTAGACTGGGAATGAGCTCCATATGCTTAGACTGGGAATGTACTCTGTATGCCTAAG
632 GCCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCGGTATGCCTAAG
*
14744164 TCAACCCACGAAATG
697 TCAACCCAAGAAATG
14744179 AGCGTGTTGG
Statistics
Matches: 628, Mismatches: 60, Indels: 48
0.85 0.08 0.07
Matches are distributed among these distances:
772 21 0.03
773 19 0.03
774 35 0.06
775 33 0.05
776 30 0.05
777 3 0.00
778 22 0.04
779 39 0.06
780 45 0.07
781 47 0.07
782 111 0.18
783 49 0.08
784 20 0.03
786 1 0.00
788 1 0.00
789 12 0.02
790 40 0.06
791 100 0.16
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (785 bp):
AGAGATGGGATGCACAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGCACATCTTCATATTT
CTGCATGCCAATACCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTCACGATTTTCAAAACTTTTGGCGGTTCAAGAT
TTTTTAAAATTTTTTTGGAAGATGTTTTGGCCCCAAACTTGATAGACATGATCCCTGTATTTTTG
TTGGCAGGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGCGCAAAGTACCA
GCACCCATCGCACACCATGCGCGCACACCCCCCGGCCACCCCGACGTCGAAACCCCAATGCCGCC
GGTCAGGTTCTACATGCTCTGGCGATGCTCCGGCGATGCTGCCCCGACGAAGAAAAATACGACAC
CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGCCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCAACCCAAGAAATGCGTC
TGCAAATGCGATTAGACTATGAAATCGTATGCCAAGAGAGAAAACGACGCGTTGCGGCCACTACG
CCGCG
Found at i:14745809 original size:899 final size:897
Alignment explanation
Indices: 14743446--14748060 Score: 5855
Period size: 902 Copynumber: 5.1 Consensus size: 897
14743436 ACGACGCGTT
* * *
14743446 GCGGCCACTACGCC-G-C-GAGAGA-TGGATGCACAAGTA-TGGAT-GATA-GGTGGTA-GTGTG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTG-G
*
14743503 GTTT--GCACATCTTCATA-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TAATACAAT
65 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
14743564 GGTCCCTTAAGCCTTCACGTGAAGTTT-ATGGC-AGACGACTTGTTTTCTATTTTTCATGA-TTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTT
* ** * * * *
14743626 TAAAACATTCCCTTGGCGGTTCGAGATTTTTTAGCAACTTTTTTTGGAAA-GATTTTTTGGCCCC
195 TGAAAC-TT---TTTACGGTTCGGGATTTTTTA--AA-ATTTTTTCGAAAGGA-GTTTTGGCCCC
* * * *
14743690 AAACTTGATAGACGTGATCCCTGTATTTTTTGTTGGCAGGCAAAAAAAAAATTCAGCTAAAAACA
252 AAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAAC-
* *
14743755 TTCGAAGTTGTGCAAGA-TTTGTGACCAATTTGAAAAAA-TGTCCCCATTTTAGACACTTTAATG
314 -TCGAAG-TGTACAAGATTTTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
14743818 GCTACTGGTAGC-AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTG
376 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
14743882 ATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGCGCGCACAC
441 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
14743947 CCCCCGGCCCCCCCGA-CGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTAGCGATGCTCTGGC
506 CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTC-GTCAGGTTCTC---CGA--------C
* * * * * * *
14744011 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAGTGTGACACCAACACATGCCTGAGCCCAGCAT
559 GATGCTCCGGCGATGGTGCCACGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
14744076 GTGCTGCCGCAACCCTCGGTCTGGCCCGATCTTAGACTGGGAATGAGCTCCATATGCTTAGACTG
624 GTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA
* * * * ** * * *
14744141 GGAATGTACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGCATTCAGTCGGCCAGAA
689 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGCCGACCAGAG
* * * * *
14744206 GGGCGGGATGCGCAAG-TCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACCATC
753 GGGCGGGATGCGCAAGCTC-GGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACC
* * * *
14744269 GCAACCCTCAATCTGGTCTGA-CTTAGACTGGGAATGAACTTCGTTTGCCCAAGCCAACCGACGA
816 GCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
14744333 AACGGAGCGGGCGGGCGGCG
881 AAC-GAGCGGGCAGGC-G-G
* * * * * *
14744353 GGGGGAACTATGCTCGTCCAGAGAGACGGGATGCACAAGCCGTGGATCGATCGGGTGGTAGGTGG
1 GCGGGCACTACGC-CGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTGG
* ***
14744418 ATTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 -GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14744483 TGGTACCTTAAGCCTTCACGTGAAGTTTTATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTT
129 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTT
* * *
14744548 TTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTA
194 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
*
14744613 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAGCTCGAAGTGTA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
14744677 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14744742 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGTTAGGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
14744807 GGCAAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * *
14744872 CGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCACGG
519 CGATCGTCGAAACCCCAATGCCGTC-GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCACGG
* * * *
14744937 TGAAGAAAAATGTGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG
583 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAG
* * *
14745002 TCTGATCTTAGACTGGGAATGAACTCCATATAG-TTAGAATAGGAATGAACTCCGTAAGCCTAAG
648 TCCGATCTTAGACTGGGAATGAACTCCATAT-GCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* *
14745066 TCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCTGAGGGGCGGGATGCGCAAGCTAGGGA
712 TCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTCGGGA
* * * * *** *
14745131 TCG-GCTGGGTCCCCCCTCTGCGTGTTATCGATCCTGCTACCGCAACCCTCGATCCAATCTAATC
776 TCGATC-GGGT-CCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAATCTGGTCTGATC
* * *
14745195 TTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCATGCGG
839 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
14745254 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGGTATCGATAGGGTGGTAGGTGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGG-ATCGATAGGGTGGTAGGTGG
14745319 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
65 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14745384 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
130 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTT
* * *
14745449 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGG
195 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* *
14745514 TAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAG-GAAAAACTTGAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14745577 AAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
14745642 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCG-GGGATAGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-GAGGGATAGGG
* * *
14745706 GGCCAATACAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * * *
14745771 CGATCGTCGGAACCCCAATGCCGTCGATCAGTTTCTCCGACGATGCTCTGACGATGGTGCCCCGA
519 CGATCGTCGAAACCCCAATGCCGTCG-TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCACGG
* *
14745836 CGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCTCA
583 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-A
** * * * * *
14745901 -TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAATTTCGTATGTCTAAG
647 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
**
14745965 TCAACCCATAAAACGAGCGTGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGC-CGAGG
712 TCAACCCACGAAACGAGCGTGCGGC-GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTCG-GG
* * ** * ** *
14746029 ATCGATCGGGTCACCCTATGCGTGCTACCGGCCCTACTACCGCAACCCTCGGTCTGGTTTCGATC
775 ATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAATCTGGTCT-GATC
* *
14746094 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCAGGCG
839 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGC--G-G
* * *
14746156 AGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCTA-TGGATCGATAGGGTGGTAGGTG
1 -GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGC-AGTGGATCGATAGGGTGGTAGGTG
* * *
14746220 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAA
64 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
14746285 CGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCAAGATTT
129 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTT
* * * * * *
14746350 TTGAAACATTTTACGGTTCGGGATTTTTTACAATTTTTTTGGATGGAGTTTTGGTCCCAAACTTG
194 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* * * *
14746415 CTGGACGT-ATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGGTAAAAACTCGAAGTGAA
259 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14746478 CAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
14746543 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-GGG
389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
14746607 GGCCAATATAAGGGCGAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCTGACCTC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCC
* * ** * *
14746672 ACCGATCGCCGAAACCCCAATGCCACCTGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CAC
517 CCCGATCGTCGAAACCCCAATGCCGTC-GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCA-
* *
14746736 CGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTGCCGCAACCCTCGGT-
580 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
14746800 TTGATCCGATCTTAGACTGGGAATGAA---C---T-C-T-G--T----AT---C-CC-TA----T
645 TAG-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * * * *
14746841 --GTCAACCCATGAAATGAGCGTGCGGCCGCTCACCCGGCCAGAGGGGTGGGATGCGTAAG-TCC
709 AAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCT-C
* * * * *
14746903 GGGATCGATCGAGTCCCCCTCTGCCGATCTTGCTACCGATCTTGCTGCCGCAATCCTCAATCCGG
772 GGGATCGATCGGGTCCCCCTCTG-CG----TGCTACCGATCCTGCTACCGCAACCCTCAATCTGG
*
14746968 TCTGATCTTAGACTGAGG-ATGAACTCCGTATGCCTAAGCCAACCGACGTAAAATGAGCGGGCGA
832 TCTGATCTTAGACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AAACGAGCGGGC-A
14747032 GCGGGCGG
893 ---GGCGG
* * * ** * *
14747040 GCGAGCACTACGTCGGCCAAAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGTG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTGGG
* * **
14747105 TTTAGGGACATCTACATATTTCTGCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
14747170 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATTTTC
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTT
* * * *
14747235 AAAAATTTTTATGGTTCGGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCCAAACTTGG
196 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCCAAACTTGG
* * *
14747300 TAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
260 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14747365 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
325 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
14747430 ACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
390 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * * *
14747495 GCCAATATAGGGGCCAAGTACCGGCACCCATCGCACCTCATGTGTGCACACCCCCCTGACCCCCC
455 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * *
14747560 GATCGCCGAAACCCAAATGCCGTCTGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCGC-CAG
520 GATCGTCGAAACCCCAATGCCGTC-GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC-CACGG
*
14747624 CGAAGAAAAATACGGCACC-GACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGGTCT
583 CGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCT
*
14747688 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
646 AGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
* * *
14747753 GTCAACACACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGTGGGGCGGGATGCGCAAGC-CGAG
711 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTCG-G
* * * * * * *
14747817 GATCGATTGGGTCCCCCTCTACGTGCTACCGATCCTGTTGCTGCAACCCTCAGTCTGGTCCGATC
774 GATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAATCTGGTCTGATC
* * * * * *
14747882 TTAGACTAGGAATGAACACCATATGCCTAAGACAACCGATGAAATGA----GCAGGCGA
839 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
* * * * *
14747937 GCGGGCACTACGCCGGCCAGGGCGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGG
1 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTGGG
*
14748002 TTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
14748061 CTTGCCATGA
Statistics
Matches: 3258, Mismatches: 342, Indels: 226
0.85 0.09 0.06
Matches are distributed among these distances:
877 70 0.02
878 5 0.00
879 1 0.00
881 41 0.01
882 30 0.01
883 233 0.07
884 19 0.01
885 137 0.04
886 180 0.06
887 54 0.02
888 2 0.00
889 1 0.00
892 2 0.00
893 1 0.00
894 2 0.00
895 2 0.00
896 1 0.00
897 117 0.04
898 42 0.01
899 497 0.15
900 242 0.07
901 107 0.03
902 559 0.17
903 227 0.07
904 43 0.01
905 8 0.00
906 5 0.00
907 77 0.02
908 1 0.00
910 23 0.01
911 60 0.02
912 202 0.06
913 55 0.02
914 4 0.00
915 22 0.01
916 47 0.01
917 4 0.00
918 13 0.00
919 49 0.02
920 34 0.01
921 5 0.00
922 26 0.01
923 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATCGTCGAAACCCCAATGCCGTCGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCACGGCGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCC
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTCGGGATCGAT
CGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACT
AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGG
Found at i:14747725 original size:26 final size:26
Alignment explanation
Indices: 14747696--14747748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14747686 CTAGTCCGAT
*
14747696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14747722 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14747748 C
1 C
14747749 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14748458 original size:25 final size:25
Alignment explanation
Indices: 14748422--14748469 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14748412 GTTGACTTAG
*
14748422 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGAAGTTCATTCCCAGTCAA
14748447 GCATACGAAGTTCATTCCCAGTC
1 GCATACGAAGTTCATTCCCAGTC
14748470 TAAGATTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCCAGTCAA
Found at i:14750215 original size:26 final size:26
Alignment explanation
Indices: 14750185--14750237 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14750175 GTTGACTTAG
*
14750185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14750211 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14750237 G
1 G
14750238 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14751097 original size:26 final size:26
Alignment explanation
Indices: 14751061--14751113 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14751051 GTTGACTTAG
14751061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14751087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14751113 G
1 G
14751114 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14751491 original size:888 final size:892
Alignment explanation
Indices: 14748060--14756388 Score: 10016
Period size: 896 Copynumber: 9.3 Consensus size: 892
14748050 TGTAAATTCA
* *
14748060 TCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
14748125 GGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCTCATACCACCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
14748190 TGCGCATCCCGTCTCTCTGG-CTAGCGTAGTGCCCGTCTGCCTGCCCGCCCACTAGTTTCATAGG
131 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGT---CG-C--CC-GCCCG----CTCGTTTCGTCGG
* * * * * * * * ** *
14748254 TTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGCACCAAGGATTGCGACAGCA
184 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTA
** * * * * *
14748319 GGATTTGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGTCA
249 GGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
**
14748384 GCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AAG
314 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * *
14748448 CATACGAAGTTCATTCCCAGTCTAAGATTGGACC-GGATTGAGGGTTACGGCAGCACATGCTGGG
379 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
14748512 CTCGAGTATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCA---TC---G--T--CGGAGAA
444 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAA
* * ** *
14748567 CCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGTTGGGGAGGGGGTGTGCGCACATGATT
509 CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG--CCGG-GGGGGTGTGCGCACATGATG
* *
14748632 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTT
571 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
14748697 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTGTGAA
635 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
14748762 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTT
700 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
**
14748827 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
765 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
14748892 AAATTTTAAAAAATCCTGAGCCGCAAAATGTTTCAAAAATTGAGAAAAATAGAAAACGAATCG
830 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
14748955 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGACTTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
14749020 GGCATTGGCACGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
14749085 TGCGCATCCCGTCTCTTTGGCCGACGTAGTGCTCGCCCGCCCGCCCGTTTACCATCATGCCATCG
131 TGCGCATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCGCCCGCTCG-TT----TC--G---TCG
* * * * ** * **
14749150 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGTTCAAGGGTTGTAGCAAC
183 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGT
* * * * * *
14749214 AGGATCGGCAACACCCAAAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCG-CCC-CT----
248 AGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
14749273 --CT--G-A--C-CA-GCT-G----A------G---TA--C--A--GAGTTCATTCCCAGTCTAA
313 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14749309 GCATAC-GAGCTCATTCCCAGTCTAAGATC-GAACTGGACCAAGGGTTGCGGCAGCACATGCTGG
378 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
14749372 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGAAGCATCGTTGGAG
443 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAG
* * * * **
14749437 AACCTGATCGAC-GCATTGTGGTTCCGACGATCGGGGGGGTGAGGGGGGGTGTGCGCACATGATG
507 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG-CCGGGGGGGTGTGCGCACATGATG
* * *
14749501 TGGGATAGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTC
571 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTC
* *
14749566 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
635 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14749631 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTT
700 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
14749696 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTTGCCAAAACTCCTTCCAAAA
765 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
14749761 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGCTTCAAAAATCGTAAAAAATAGAAAACGAGTCG
830 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
14749824 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * *
14749889 GGCATTGGGACACAAAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGACT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
14749954 TGTGCAACCCGTCTCTCAGGCCGACGTAGTGGCCGCCCGCCCGCTCTCCAGCTCATTTCGTCGGT
131 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCG--CT-C-G----TTTCGTCGGT
* * * * * * *
14750019 TGGCTTAGGCAAATGGAGTTCATTCCTAGTCTAAGATCTGAC--CATTTGAGGGTTGCGGTAGCA
185 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGGTAGTA
* * * * **
14750082 GGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTATGCATCCCGCCCCTCTGGCCG
249 GGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
14750147 GCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
314 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * *
14750212 CATACAGAGTTCATTCCCAGTCTAAGATCAGA-TTGGATCGAGGGTTACGACAGCACATGCTGGG
379 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
14750276 CTCGGACATGTGTTGGTGCCACATGTTTCTTCACCGGGGCACCA---TC---G---C-CGGAGAA
444 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAA
* * ** *
14750331 CCTGACCGGTGGCATTAGGGTTCCGGTGATC-AGGGGGCC-GGGGGGTGTGCGCATATGATGTGC
509 CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
14750394 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCACTATGCCTCATCAAACCTCGAGAACTCACA
574 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACA
*
14750459 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
638 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
14750524 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
703 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
14750589 GCATGCGAACAAAAATACAAGGATCACATCTACCAAGTTTGGGTCCAAAAATCCTTCC-AAAAAA
768 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* ** *
14750653 TTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
833 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
14750713 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * **
14750778 GGCATTGGCATGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAACT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
14750843 TGTGCAT-CCGTCTCTCTGGCCGACGTAGT-GCCC-CCCGCTGGTTTCGTCGGTTGGCTTAGGCA
131 TGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * * *
14750905 TACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGTAGGATCAGCAGCA
196 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCAGCAGCA
* ** *
14750970 CGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCTTGCCCCTCCT-GTCGGCTGAGCACCC
261 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCACCC
*
14751034 GCACGCTTGTTTC-TCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
325 GCACGCTCGTTTCAT-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
14751098 TCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTGCGATAGCACATGCTAGGCTCAGGCATG
389 TCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* *
14751162 TGTTGGTGCCGCATTTTTCTTCGTGGGGGCACCATCGTCGGAGCATCGCAGGAGAACTTGACCGG
454 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-GGAGAACCTGACCGG
* * *
14751227 CGGCATTAGGGTTCCGACGATCGAGGGGTCCGGGGGGGTGTGCGCACATGCTGTGCGATGGGTG-
518 CGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
14751291 TGGTACTTGGCCCTTGTATTGGTCCCCTATCCTTCATCAAACCTTGAGAACTCACACCTCCTTAA
583 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
14751356 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
647 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
14751421 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTATGCTTGCCAA
712 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * **
14751486 CAAAAATACAAGGATCACGTCTACCGAGTTTGGGGCCAAAAGTACTTCTGAAAAAATTTTAAAAA
777 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
14751551 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG
842 ATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* **
14751602 TCTTGCCATGAAA-TTCACGTGAAGGCATAAGGGAATATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
14751666 GGCATTGGCATGCATAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
14751731 TGCGCATCCCGTCTCTCTGGCCGGCGTTGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
131 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
14751796 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACTGGATCGAGGGTTACGATAGTAGGATCAGTG
193 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCAGCA
* ** * * * *
14751861 GCACACAGAGGCAGACCCGGTCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCAC
258 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
14751926 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTGATTCCCAGTCTAACCATAC-AAG
323 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
14751989 TTCATTCCCAGTCTAAGATCAGACCA-GATCAAGGGTTAC-AGCAGCACATGCTGGGCTCGGGCA
388 TTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCA
* * *
14752052 TGTGTTCGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATC
452 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACC
* * * * *
14752117 GGCGGCATTGGGGTTCCGACGATCAAGGGGGGC-GCGGGGTGTGCGCACGTGATGTGCAATGGGT
516 GGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
14752181 GCTGGTACTTGGGCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTT
581 GCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
14752245 AAAGAGCAATTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
645 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
14752310 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTCTATGAATGCC
710 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* ** * * *** *
14752375 AAGAAGGATACAAGGATCGCCTCTACCAAGTTTGGGTTGAAAAATCCTTCCAAAAAAATTTTAAA
775 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * *
14752440 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATTGAAAATGAGTCG
840 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
14752493 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *** * * *
14752558 GGAATTGGCACATAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATGCACAGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
14752623 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
131 TGCGCATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
14752688 CCAGACGGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTACAGTAGCAGGATCAACA
193 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCAGCA
* * ** * * *
14752753 GCATGCAGAGGGGGACCTGGCCGATCCCTGGCCTACGCATCCCGCCCCTCTGGCCGGCTGAGCAC
258 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
** * ** * * *
14752818 CCATACGCTTGTTTTGTGGGTTGACTTAGGCATACGAAGTTAATTCCCAGACTAAGCATACGGAG
323 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
14752883 TTCATTCCCAGCCTAAGATCGGACC-GGACCGAGGGTTGCAGTACCA-CACA--CTGGGCTCGGG
388 TTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGC-G-A-CAGCACATGCTGGGCTCGGG
* *
14752944 CATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGGAGCATCACCGGAGAACCTG
450 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC-GCGGAGAACCTG
* * * * * * *
14753008 ACCGGCGGCATTGGGGTTTCGGCGTTCGGGGGGGCC-GGGGGGTATACGCACATGATGTGGGATG
513 ACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
14753072 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGACCTCACACCCC
578 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
14753137 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAATTGTTTGAAATGGGGA
642 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
14753202 CACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTCTAGATGAATTTTTTTGTGCAT
707 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
14753267 GCCAAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
772 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * * * *
14753332 TAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATTG-AAAATAAAAAATGAGTCG
836 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCG
* **
14753389 TCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATGAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
**
14753454 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
14753519 TGCGCATCCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
131 TGCGCATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
14753584 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAAGGTTGTGGCAGTAGGAT-TGCC
193 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCAG-C
* ** * * *
14753648 AGCACGTAGAGGGGGAATCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
257 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
14753713 CCCGTACGCTCATTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
322 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
14753778 GTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGCCTAAGATCGGACCAGATCGAGGGTTG
387 GTTCATTCCCAGTCTAAG-AT-C-G-G---------A-CC----A--GGA-C----CGAGGGTTG
* * * * **
14753843 CGATAGCACATTCTGGGTTCGGGCATGTGTTGATGCCATATTTTTCTTCGTCGGGGCACCATCGT
427 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * *
14753908 CGGAGCGTCGTC-GAGAACCTGACCGACGGCATTGGGGTTTCGGCGAT-G-GGGGG-CTGGGGGG
492 CGGAGCATCG-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGG
*
14753969 TGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCA
556 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCA
*
14754034 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTTACTGCCAGTTAGC
621 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAG-TAGC
* *
14754099 CATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTTGTACACTTTGAGT
684 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGT
*
14754164 TTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
748 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** *
14754229 CAAAAACTCCTT-C-TGAAAATTTT-AAAAATCCTGAGCCGCAAAAATGTTTCAAAAAT--TGAA
813 C-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAA-GTTTCAAAAATCGTG-A
*
14754289 AAAATAG-AAACGAATCG
875 AAAATAGAAAACGAGTCG
* *
14754306 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGACTTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
14754371 GGCATTGGCATGTAGAAATATG-AGAAGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
14754435 TGCGCATCCCGTCTCTCTGGCCTACATAGTGCCCGCCCGCCCGCTGTCTACTATCATGCCGTCAG
131 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGC--TC--GT-T--T--CGTCGG
* * * * * *
14754500 TTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-TCGGTTCAAGGGTTGCAGCAAT
184 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGTAGT
*
14754563 AGGATCAGCAGCACCCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
248 AGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
14754628 GGTTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
313 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14754693 GCATACGGAGCTCATTCCCAGTCTAAGATCGAATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
378 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGG
* * **
14754757 GCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
443 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAG
* ** * * * *
14754822 AACCTGACCGACGGCATTGTCGTTTCGACGATCGGGGGGGTGGCGAGGGGGTGTGCGCGCACATG
507 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GAGGGG-GCCG-GGGGG-GTGTGCGCACATG
* *
14754887 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAA
568 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* *
14754952 CTCACACCCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCCAGCCAGTTAGCAATTAAAGTG
632 CTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTG-CTGCCAG-TAGCCATTAAAGTG
*
14755017 TCTGAAA-GTGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACATT-GAGTTTTTAGCTG
694 TCTGAAATG-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTG
14755080 AATTTTTTTGTGCAT-CCAACAAAAATACAAGGATCACGTCTACCAAAGTTT-GGGCC-AAACTC
757 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTC
* * *
14755142 CTTCCGAAAAAATTTTAAAAAATCATACCGATACAGCAAAGAAAGGTTTTCCAAAAATCGATGAA
821 CTTCCAAAAAAATTTTAAAAAATC---CTGA-ACCGC-AA-AAA-G-TTT-CAAAAATCG-TGAA
* * * *
14755207 ACATAAAAAACAATCGTCTTTTC
876 AAATAGAAAACGA--GTC----G
*
14755230 TCTTGCCAATGAAACTTCACCGTGAAGGTCTTAAGGGACCATTCTATGAATTTAC-AGCCATTAA
1 TCTTGCC-ATGAAACTTCA-CGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCA-TAA
*
14755294 AACAT-GCATTTTGCCATGCAGAAATATGATCTAGCATGTGCCTAAACCCACCTACCACCCTATC
62 AA-ATGGCA--TTGGCATGCAGAAATATGA---AG-ATGTGCCTAAACCCACCTACCACCCTATC
* * ** *
14755358 GATTCACAGCTTGAACATCCCATCTCTCTGGCCGGCACAGT-GCTCGCCCGCCCGCTCGTTTCGT
120 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-AC-GTAG-TCGCCCGCCCGCTCGTTTCGT
* * * *
14755422 CGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTA
181 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTA
* * * * * *
14755487 GCAGGATCGGCAGCACGTAGAGGGGGACTCGATCGATCCCTGGCTTGTGCATCCCGCCCCTCTGG
246 GTAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * *
14755552 CCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCATTAT
311 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
14755617 AAGCATACGGAGTTCATTCCCAATCTAAGATTGGA-CAGGACCGAGGGTTGCGACAGCACATGCT
376 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCT
* * * *
14755681 GGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAG
441 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCGG
* *
14755746 AGAACCTGACCGGCAGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGGTGTGCGGACATGA
505 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGGTGTGCGCACATGA
* * * * *
14755810 TCTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAAACTCGAGAAC
569 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
* * *
14755875 TCACTCCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
633 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
14755940 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTT
698 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* **
14756005 TTTGTGCATGCCAACAAAAATAC-AGCGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
763 TTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * * * *
14756069 AAAAAATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAAGAAAAAATGAGT
827 AAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
14756133 CG
891 CG
* *
14756135 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
1 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
14756200 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
66 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
14756265 TGCGCATCCTGTCTTTCTGGCCCACGTAGTGCCCGCCCGCCTGCCCGCCTACTCGTTTCGTCGAT
131 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CG--C-CC-GCCCG----CTCGTTTCGTCGGT
* * * *
14756330 TGGCTTAGGCATAAGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGG
185 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGG
14756389 CAGCAAATGC
Statistics
Matches: 6467, Mismatches: 706, Indels: 513
0.84 0.09 0.07
Matches are distributed among these distances:
860 3 0.00
861 102 0.02
862 8 0.00
863 1 0.00
864 1 0.00
865 1 0.00
866 1 0.00
867 100 0.02
868 10 0.00
869 464 0.07
870 6 0.00
871 27 0.00
872 16 0.00
873 1 0.00
875 52 0.01
876 217 0.03
877 6 0.00
878 1 0.00
879 3 0.00
880 2 0.00
881 7 0.00
882 6 0.00
883 6 0.00
884 4 0.00
885 2 0.00
886 2 0.00
887 36 0.01
888 368 0.06
889 312 0.05
890 258 0.04
891 276 0.04
892 510 0.08
893 72 0.01
894 376 0.06
895 272 0.04
896 584 0.09
897 52 0.01
898 78 0.01
899 35 0.01
900 26 0.00
901 3 0.00
902 62 0.01
903 104 0.02
904 92 0.01
905 13 0.00
906 89 0.01
907 107 0.02
908 65 0.01
909 4 0.00
910 6 0.00
911 17 0.00
912 10 0.00
913 7 0.00
914 5 0.00
915 10 0.00
916 80 0.01
917 101 0.02
918 90 0.01
919 187 0.03
920 134 0.02
921 132 0.02
922 153 0.02
923 12 0.00
924 167 0.03
925 98 0.02
926 287 0.04
927 33 0.01
928 2 0.00
929 17 0.00
930 1 0.00
932 2 0.00
933 2 0.00
934 66 0.01
936 3 0.00
937 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCAGCAGCA
CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCAGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGCGG
CATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
Found at i:14751990 original size:25 final size:25
Alignment explanation
Indices: 14751956--14752004 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14751946 TTGACTTAGG
* *
14751956 CATACGAGTTGATTCCCAGTCTAAC
1 CATACAAGTTCATTCCCAGTCTAAC
14751981 CATACAAGTTCATTCCCAGTCTAA
1 CATACAAGTTCATTCCCAGTCTAA
14752005 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (25 bp):
CATACAAGTTCATTCCCAGTCTAAC
Found at i:14752878 original size:26 final size:26
Alignment explanation
Indices: 14752847--14752899 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752837 GTTGACTTAG
14752847 GCATACGAAGTTAATTCCCAGACTAA
1 GCATACGAAGTTAATTCCCAGACTAA
* * *
14752873 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTAATTCCCAGACTAA
14752899 G
1 G
14752900 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGACTAA
Found at i:14753773 original size:26 final size:26
Alignment explanation
Indices: 14753743--14753821 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14753733 GTTGCCTTAG
*
14753743 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14753769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14753795 GCATACGGAGTTCTTTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14753821 G
1 G
14753822 ATCGGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14754707 original size:26 final size:26
Alignment explanation
Indices: 14754667--14754719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754657 GTTGACTTAG
*
14754667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14754693 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14754719 G
1 G
14754720 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:14755645 original size:26 final size:26
Alignment explanation
Indices: 14755593--14755645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14755583 GTTAACTTAG
*
14755593 GCATACGGAGTTCATTCCCATTATAA
1 GCATACGGAGTTCATTCCCAATATAA
*
14755619 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
14755645 G
1 G
14755646 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:14757020 original size:720 final size:719
Alignment explanation
Indices: 14755619--14757113 Score: 2237
Period size: 720 Copynumber: 2.1 Consensus size: 719
14755609 CCCATTATAA
* ** * * *
14755619 GCATACGGAGTTCATTCCCAATCTAAGATTGGACAGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAATGCTGGG
** * *
14755684 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCAGAGA
** *** *
14755749 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGGACATGATCTG
131 ACCTGACCAACAGCATTGGGGTTCCGACGATCGGGGGGCCAACGGGGGTGTGCGCACATGATCTG
* *
14755814 TGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAAACTCGAGAACTCAC
196 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
* * *
14755879 TCCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14755944 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTGTTTTC
*
14756009 TGCATGCCAACAAAAATACAGCGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
391 TGCATGCCAACAAAAATACAACGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * **
14756074 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAAGAAAAAATGAGTCGTCTT
456 ATTTTAAAAAATCTCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAAGAAAAAACGAGTCACCTT
** * *
14756139 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
*
14756204 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
14756269 CATCCTGTCTTTCTGGCCCACGTAGTGCCCGCCCGCCTGCCCGC-CTACTCGTTTCGTCGATTGG
651 CATCCTGTCTCTCTGGCCCACGTAATGCCCGCCCGCCCGCCCGCTC-ACTCGTTTCGTCGATTGA
*
14756333 CTTAG
715 CGTAG
* *
14756338 GCATAAGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAATGCTGGG
* * *
14756403 CTCAGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGAT-GGAGCATCGCCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-TCGGAGCATCACCAGAG
* * * * * * *
14756467 AAGCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGAGGTCAACGTGGGTGTGCGCACATGATG
130 AACCTGACCAACAGCATTGGGGTTCCGACGATCGGGG-GGCCAACGGGGGTGTGCGCACATGATC
* *
14756532 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTC
14756597 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14756662 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTGTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTGTTT
* * *
14756727 TCTGCATGCCAACAAAAGTACAACGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTT-TCGAA
389 TCTGCATGCCAACAAAAATACAACGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* * * * *
14756791 AAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCAC
453 AAAATTTTAAAAAATCTCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAAGAAAAAACGAGTCAC
14756856 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATG
518 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATG
* *
14756921 GCATTGGCACGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
14756986 GCGTAT-CTCGTCTCTCTGG-TCA-GTGCAATGCCCGCTCGCCCGCCCGCTCGCTCGTTTCGTGG
648 GCGCATCCT-GTCTCTCTGGCCCACGT--AATGCCCGCCCGCCCGCCCGCTCACTCGTTTCGTCG
*
14757048 GTTGACGTAG
710 ATTGACGTAG
14757058 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCA
14757114 GCATCGGCAG
Statistics
Matches: 695, Mismatches: 74, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
718 2 0.00
719 148 0.21
720 544 0.78
721 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCAGAGA
ACCTGACCAACAGCATTGGGGTTCCGACGATCGGGGGGCCAACGGGGGTGTGCGCACATGATCTG
CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTGTTTTC
TGCATGCCAACAAAAATACAACGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAATCTCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAAGAAAAAACGAGTCACCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCTGTCTCTCTGGCCCACGTAATGCCCGCCCGCCCGCCCGCTCACTCGTTTCGTCGATTGAC
GTAG
Found at i:14758157 original size:26 final size:26
Alignment explanation
Indices: 14758121--14758173 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758111 GTTGACTTAG
14758121 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
14758147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
14758173 G
1 G
14758174 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:14758266 original size:904 final size:903
Alignment explanation
Indices: 14756338--14758550 Score: 3300
Period size: 904 Copynumber: 2.4 Consensus size: 903
14756328 ATTGGCTTAG
* * * *
14756338 GCATAAGGAGTTCATTCACAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
14756402 GCTC-AGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGAT-GGAGCATCGCCGG
65 GCTCGA-GCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCGG
* ** * *
14756465 AGAAGCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGAGGTCAAC-GTGGGTGTGCGCACATG
128 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GG-C--CGGGGGGTGTGCGCACATG
14756529 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
14756594 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
14756659 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTG
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTT
* * * *
14756724 TTTTCTGCATGCCAA-CAAAAGTACAACGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTTC
384 TTTTGTGCATGCCAACCAAAAGTACAACGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCC
* * *
14756788 GAAAAAATTTTAAAAAATCTCGAACAGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGT
449 GAAAAAATTTGAAAAAATCTCGAACAGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGT
* *
14756853 CACCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
514 CACCTTGCCATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAA
*
14756918 ATGGCATTGGCACGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
14756983 CTTGCGTATCTCGTCTCTCTGGTCAGTGCAATGCCCGCTCGCCCGCCCGCTCGCTCGTTTCGTGG
644 CTCGCGCATCCCGTCTCTCTGGTCAGTGCAATCCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCG
*
14757048 GTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGC
709 GTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGC
* * * * * *
14757113 AGCATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTGGTC
774 AGCATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGACTTACACATCCCGCCCCTCTGGCC
* *
14757178 GGCTGAGAACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
839 GGCTGAGAACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACAGTCCCAGTCTAA
* *
14757243 GCAAACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
14757308 CTCG-GCCATGTGCTGGTGCTACATTTTTCTTCGCCGAGGCATCATCGCCGGAGCATCGTCGGAG
66 CTCGAG-CATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
14757372 AACCTGACTGGCGGTATTGGGGTTCCGACGATCGTGGGGGCCGGGCGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGG-GGGTGTGCGCACATGATGT
* * *
14757437 GCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
14757502 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
14757567 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
14757632 GGGCATGTCAACCAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAA
388 GTGCATGCCAACCAAAAGTACAACGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAA
* ** ***
14757696 AAATTTGAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGT
453 AAATTTGAAAAAATCTC-GAACAGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCAC
* *
14757760 CTTGCCATCAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATG
*
14757825 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
* * *
14757890 GCGCATCCCGTCTCTCTGGTC-G-GCACAGTCCCCGCCCGTCCGCCC-ATCCGCTGGTTTCGTCG
647 GCGCATCCCGTCTCTCTGGTCAGTGCA-A-TCCCCGCCCGCCCGCCCGCT-CGCTCGTTTCGTCG
* * *
14757952 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACTGAGGGTTGC-ACTA
709 GTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGAC-A
* * * * *
14758015 GCAGGATCAGCAGCATGTAGAGAGGGACCCGATCGATCCCCGACTTACGCATCTCGCCCCTCTGG
772 GCAGCATCAGCAGCACGTAGAGAGGGACCCGACCGATCCCCGACTTACACATCCCGCCCCTCTGG
* *
14758080 CCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAGTCT
837 CCGGCTGAGAACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACAGTCCCAGTCT
14758145 AA
902 AA
* * *
14758147 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
14758212 TTCGAGCATGTACAGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
66 CTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
14758277 ACCTAACCGGTGGCATTGGGGCTCCGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
14758342 ATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
14758407 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
14758472 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAGTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
14758537 CATGCCAACAAAAA
391 CATGCCAACCAAAA
14758551 ATCATGAACC
Statistics
Matches: 1175, Mismatches: 118, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
902 219 0.19
903 17 0.01
904 791 0.67
905 144 0.12
906 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACCAAAAGTACAACGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAA
TTTGAAAAAATCTCGAACAGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCACCTTG
CCATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGC
ATCCCGTCTCTCTGGTCAGTGCAATCCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGACG
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGCATCA
GCAGCACGTAGAGAGGGACCCGACCGATCCCCGACTTACACATCCCGCCCCTCTGGCCGGCTGAG
AACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACAGTCCCAGTCTAA
Found at i:14759018 original size:26 final size:26
Alignment explanation
Indices: 14758966--14759018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758956 GTTAACTTAG
*
14758966 GCATACGGAGTTCATTCCCATTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
14758992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
14759018 G
1 G
14759019 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:14761523 original size:26 final size:26
Alignment explanation
Indices: 14761494--14761546 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14761484 GTTGATTTAG
14761494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14761520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14761546 G
1 G
14761547 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14761897 original size:897 final size:899
Alignment explanation
Indices: 14759720--14762035 Score: 3393
Period size: 904 Copynumber: 2.6 Consensus size: 899
14759710 ATTGGCTTAG
* * * * * *
14759720 GCATAAGGAGTTCATTCACAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** * *
14759785 CTC-AGGCATGTGCTGGTGCCATATTTTTCTTTATCG-GGCACCATCGATGGAGCATCACCAGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCA-CATCGCCGGAGCATCGCCGGAG
* * * * * * *
14759848 AAGCTGACCAACGGCATTGGGGTTCTGGCGATCGGGGAGGTCGACGTGGGTGTGCGCAAATGATG
129 AACCTGACCAACGGCATTGGGGTTC-CGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* *
14759913 TGCGATGGGTGCTAGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
14759978 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14760043 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTGTTT
322 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
14760108 TT-GCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TTGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
14760172 AAATTTTAAAAAAAT-CTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAA-TTTAAAAAAATCCT-GAACCGTAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCG
* *
14760236 CCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAT
514 CCTTGCCATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAAT
14760301 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
14760366 TGCGTATCCCGTCTCTCTAGCCAGTGCAGTGCCCGCTCGCCCGCCCGCTCGCTCGTTTTGTGTGT
644 TGCGCATCCCGTCTCTCTAGCCAGTGCAGT--CAGCTCGCCCGCCCGCTCGCTCATTTCGTCAGT
*
14760431 TGATGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAG
707 TGATGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * *
14760496 CATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGTCGG
772 CATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
**
14760561 CTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
837 CTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
* * *
14760624 GCAAACGGAGTTCATTCCCCGTCTAAGATC-GAACCATGACCGAGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC-GGACCGAGGGTTGCGGCAGCACATGCTG
* * * **
14760688 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGAGGCATCATCGCCGGAGCATCGTTGGA
64 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCA-CATCGCCGGAGCATCGCCGGA
*** * *
14760753 GAACCTGACTGGCGGTATTGGGGTTCCGACGATCGTGGGGGCC-GGGGGGTGTGCGCACATGATG
128 GAACCTGACCAACGGCATTGGGGTTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
14760817 TGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
14760882 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
14760947 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
322 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
14761012 TGGGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTCCGAAA
387 T-GGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
14761077 AAATTTGAAAAAATCCTGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTTGTC
451 AAATTTAAAAAAATCCTGAACCGTAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGCC
* *
14761142 TTGCCATCAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGG
** * * *
14761207 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACTCTATCGATCCATGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
14761272 CGCATCCCGTCTCTCTAGCC-G-GC-GT-AG-T-GCCCGCCCGC-CTGCTCATTTCGTCAGTTGG
646 CGCATCCCGTCTCTCTAGCCAGTGCAGTCAGCTCGCCCGCCCGCTC-GCTCATTTCGTCAGTT-G
* * * * *
14761330 CT-TAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGA
709 ATGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCA
* * * * *
14761394 TCAGCAGCATGCAGAGGGGGGCCCGACCGTTCCCCGGCTTGCACATCCGGCCCCTCTGGCCGGTT
774 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCT
* *
14761459 GAGCACCCACACGCT-AGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCACCCACACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
*
14761520 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
14761585 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACAATCGCCGGAGAATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCAC-ATCGCCGGAGCATCGCCGGAGA
* *
14761650 ACCTAACCAACGGCATTGGGGTTCCAGTGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATGT
130 ACCTGACCAACGGCATTGGGGTTCC-GCGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
14761715 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14761780 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14761845 TGGGGAAACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
323 TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
14761910 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAG
388 G-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
14761975 AATTTTAAAAAATCCCGAACCGTAAAGAGTTTTGAAAATTATGAAAAATAGAAAACAAGTC
452 AATTTAAAAAAATCCTGAACCGTAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTC
14762036 ATCTGGCCGA
Statistics
Matches: 1266, Mismatches: 129, Indels: 41
0.88 0.09 0.03
Matches are distributed among these distances:
894 1 0.00
895 118 0.09
896 226 0.18
897 321 0.25
898 1 0.00
901 2 0.00
902 2 0.00
903 7 0.01
904 419 0.33
905 118 0.09
906 51 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACATCGCCGGAGCATCGCCGGAGAA
CCTGACCAACGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TAAAAAAATCCTGAACCGTAAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCC
ATCAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTAGCCAGTGCAGTCAGCTCGCCCGCCCGCTCGCTCATTTCGTCAGTTGATGTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCATCAGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACC
CACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
Found at i:14762282 original size:26 final size:26
Alignment explanation
Indices: 14762253--14762305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14762243 GTTGACTTAG
*
14762253 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14762279 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14762305 G
1 G
14762306 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14763883 original size:26 final size:26
Alignment explanation
Indices: 14763853--14763905 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14763843 GTTGACTTAG
14763853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14763879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14763905 G
1 G
14763906 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14764784 original size:25 final size:25
Alignment explanation
Indices: 14764755--14764803 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
14764745 TTAGGCATAC
*
14764755 GGAGTTCATTCCCAGTCTAAGATCG
1 GGAGTTCATTCCAAGTCTAAGATCG
14764780 GGAGTTCATTCCAAGTCTAAGATC
1 GGAGTTCATTCCAAGTCTAAGATC
14764804 AGACCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GGAGTTCATTCCAAGTCTAAGATCG
Found at i:14765920 original size:902 final size:901
Alignment explanation
Indices: 14762997--14766443 Score: 4592
Period size: 902 Copynumber: 3.8 Consensus size: 901
14762987 GCTTAGAAAT
* * * * * *
14762997 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAGCAAGGGTTACGGTAGCACAAGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* ** *
14763062 GGCATGTGCTGGTGCCGTATATTTCTTCACCGGGGCACCA---T-----CA-CCGGAGAACCTAA
66 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGA
* * *
14763118 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGT
131 CCGACGGCATTGGGGTTCCGACAATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
14763183 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
14763248 AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACAC
* * **
14763313 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAGTTTTTTTGTGCATGTG
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** * *
14763378 AAAAAAAATACAAGGATTGCGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
391 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* ** * *
14763443 AAA-TCGCAAACCTTAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
456 AAATTC-CGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* *
14763507 AACTTCACGAGAAGGCTTAAGGGACCGTTCTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
520 AACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-
* *
14763572 GCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATTC
584 -CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
14763635 CGTCTCTCTGGCCGGCGTAGTGCCCA----CCTACCCATCCGCCCGCTCATTTCGTCGGTTGGCT
648 CATCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCACCCGCCCGCTCATTTCATCGGTTGGCT
* * * *
14763696 TAGGCATACGGAGTTCAGTCCCAGTCTAAGAT-TG----GATCGAGGGTTGCGACAGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCG
* * * *
14763756 GCAGCATGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAG
778 GTAGCA-ACAGAGGGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTAAG
* * *
14763821 TGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* * * * * *
14763883 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAGCAAGGGTTGCGGCAGCACATGCTGGGCTCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
*
14763948 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---CCGGAGAACCTGA
66 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGA
* * * *
14764004 CCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCAGGGGGGTGTGCGCACATAATGTGTGATGGG
131 CCGACGGCATTGGGGTTCCGACAATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
14764069 TGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGAGAACTCACACCACCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * ** * *
14764134 TAAAGAGCATATGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGCCTTTGAAAATGGGGGC
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTG-AAATGGGGAC
*
14764199 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
14764264 CCAAAAAAAATACAGGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA-TTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * *
14764328 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCAATG
454 AAAAATTCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
* * * *
14764393 AAACTTTACGTGAAGGCTTAAGGGACCATTGGATGAATTTAAAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
14764458 CGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCC
584 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * * *
14764523 GTCTCTTTGGCTGACATAGTGCCCGCCCGCCCGCCCTCCCGCCCGCTCGTTTCATCAGTTGGCTT
649 ATCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCACCCGCCCGCTCATTTCATCGGTTGGCTT
* * * *
14764588 AGGCATACGAAGTTCATTCCCAGTCTAAGGTTAGACCAGACCGAGGTTTGTGACAGCAGGATCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGG
* * * * *
14764653 TAGCAAGCAGAGGGGGACCCAGCCGATCCTCGGCTTGCGCATCCCACGCCTCTAGCTGGCTGAGC
779 TAGCAA-CAGAGGGGGACCCGGCCGATCC-CGGCTTGCGCATCCCGC-CCTCTGGCCGGCTAAGC
*
14764718 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC
841 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-C
* * *
14764779 -GGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * *
14764843 AGCATGTGCTGGTGCCGTATTTTTTTTTGTCGGGGCACCATCGTCGGAGCATTACCGGAGAACCT
66 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-T-CCGGAGAACCT
* * *
14764908 GTCCGACGGCATTGGGGTTTCGACAATTGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATG
129 GACCGACGGCATTGGGGTTCCGACAATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATG
* *
14764973 GGTACTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
14765038 CTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTTAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGA
* *
14765103 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTATGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
14765168 GCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC-CCTTTCAAAAAAATTTT
388 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * ** * * *
14765232 AAAAAATTCTGAACCGCAAAAA-TTTTGAATATCGTGAAAAATAGAAAATGAGTTGTCTTGCCAT
453 AAAAAATTCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
14765296 GAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
14765361 ACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATTCATGGCTTGCGCATCC
583 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** *
14765426 CATCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCC-CCCGTACGCTCGTTTCATCGGTTGG-T
648 CATCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCACCCGCCCGCTCATTTCATCGGTTGGCT
* ** * * *
14765489 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAAAGGGTTGT-AGTAGAACGATC
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGA-CAGCAGGATC
* *
14765553 GGTAGCACATAGAGGGGGACCCGGCCGATTCCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTAAG
777 GGTAGCA-ACAGAGGGGGACCCGGCCGATCCCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTAAG
* * *
14765618 CGCCCGCACGCTTGTTTAATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
* * * *
14765680 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCT-CGGTAGCACATACT-GGCTC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT-TACGGCAGCACATGCTGGGCTC
* * *
14765743 GGGCATGTGCTGATGCCATATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCTGGAGAA-C
65 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-C-GGAGAACC
* * *
14765807 TGACCGACGGCATTGGGGTTCCGACGATCAGTGGGG-TCGAGGTGGGTGTGCACACATGATGTGC
128 TGACCGACGGCATTGGGGTTCCGACAATC-GGGGGGCT-G-GG-GGGTGTGCGCACATGATGTGC
*
14765871 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
14765936 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGCCCGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
* *
14766001 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * * *
14766066 GCATGCCAACAAAAATACAAGGATCATATTTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAG
384 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * ** * ** *
14766131 TTTTAAAAAATGCCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAGAACAAGTCGTCCTG
449 TTTTAAAAAATTCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
* * *
14766196 CCATTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * *
14766261 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGC
579 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** ***
14766326 ATCCCATCTCTCTGGCCAGCATAGTG----CCCGCCTGCCTGCCCGTGTGCTCATTTCATCGGTT
644 ATCCCATCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCACCCGCCCGCTCATTTCATCGGTT
* **
14766387 GGCTTAGGCATACAGAGTTCATTCTTAGTCTAAGATCAGACCAGACCGAGGGTTGTG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
14766444 GCATTTGAGA
Statistics
Matches: 2259, Mismatches: 253, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
885 1 0.00
886 142 0.06
887 332 0.15
888 123 0.05
891 57 0.03
892 1 0.00
895 95 0.04
896 129 0.06
898 2 0.00
899 2 0.00
900 41 0.02
901 171 0.08
902 425 0.19
903 56 0.02
904 373 0.17
905 132 0.06
906 177 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACAATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATTCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
ACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
CTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGGTA
GCAACAGAGGGGGACCCGGCCGATCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTAAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
Found at i:14767021 original size:26 final size:26
Alignment explanation
Indices: 14766992--14767044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14766982 GTTGACTTAG
14766992 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
14767018 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
14767044 G
1 G
14767045 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:14768593 original size:26 final size:26
Alignment explanation
Indices: 14768564--14768616 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14768554 CCGGTCTGAT
* *
14768564 CTTAGGCTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14768590 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14768616 C
1 C
14768617 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14769485 original size:26 final size:26
Alignment explanation
Indices: 14769456--14769508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14769446 CTGGTTTGAT
*
14769456 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14769482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14769508 C
1 C
14769509 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14770213 original size:890 final size:893
Alignment explanation
Indices: 14768315--14772469 Score: 5337
Period size: 889 Copynumber: 4.6 Consensus size: 893
14768305 CATCAAACAA
* *
14768315 AAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
14768380 CAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCTCGATCCTTCCGATCGCTGGAACC
65 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-C---CC--CCGATCGCCGGAACC
*** * * * *
14768444 CCAATGCCGCCAAACAGGTTCTCCGGTGATGCTCCGACGATGGTACCCCGACAAAAAAAATGTGA
122 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAAAAAATGCGG
* * * * * * *
14768509 CATCAACACATACCCGAGCCTAGCATGTGCT-ACGTAACCCTCAGTCCGGTCTGATCTTAGGCTG
187 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTG
* * * * *
14768573 TGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTGAACCCACGAAACAA
252 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
14768638 GCGTGCGGGTGCTTAGCCGGCCAGAGGTGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
317 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCT
* * * * *
14768703 CTGCGTGCTGCCGATCCTACTG-TCGCAACCCTTAGT-CTGGTCTGATCTTAGACTGGGAATGAA
382 CTACATGCTGCCGATCCTGCTGCT-GCAACCCTCAATCCT-GTCTGATCTTAGACTGGGAATGAA
* * *
14768766 CTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGACC
445 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGCC
14768831 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
509 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*** *
14768896 TTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACG
574 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
**
14768961 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTG
639 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCA
* *
14769026 AGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATT
704 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
14769091 TTTATTGGCATGCACAAAAGAATTCAGCTAAAAACT-AGAAGTGTACAAGATTTTGTGACCATAT
769 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTT
* * * *
14769155 GAAAAAAGTGTCCCTATTTCGGACACTTTAATGGTTACTCGCAGCAAACCTGTAAAATCTC
833 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
14769216 AAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
14769281 CAAGTACCAGCACCCATTGCACATCTTGTGTGCACA--CCCCCCGATCGCCGAAACCCCAATGCC
65 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGATCGCCGGAACCCCAATGCC
* *
14769344 GCCGGTCGGGTTCTCC-GTGATGCTCCGACGATGGTGCCCCGACGAAAAAAATACGGCACCAACA
130 GCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAAAAAATGCGGCACCAACA
* ** *
14769408 CATGCCCGAGCCCAGCATGTGCTGTCGCAACATTCAGTCTGGTTTGATCTTAGACTGGGAATGAA
195 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
* * * *
14769473 CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCAGGAAACGAGCGTGCAG
260 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * ** ** * ***
14769538 GTGCTCAG-CGGCCAGAGGGGCGGGCTGTGCAAGCCAGGGATTGGTCGGGTGTCTTTTTGGGTGC
325 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACATGC
* * * *
14769602 TGCCGATCCTGCTGGTGCAACCCTCAATCCTATTTGATCTTAGACT-AGAATGAACTCCGTATGC
390 TGCCGATCCTGCTGCTGCAACCCTCAATCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
14769666 CTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCGGGCGGGCACTATGCCGGCTAGAGAGACGG
455 CTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
*
14769731 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATG
519 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
14769796 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAA
584 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * * **
14769861 TGGCAAGGTGACTCGTATTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTA
649 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTA
* *
14769926 ATA-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTG-A
714 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
14769989 TGCACAAAAAACATTCAGCTAAAAACTCAAAGTGTACCAGATTTTGTGACCATTTGAAAAAAGTG
779 TGCACAAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
14770054 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTC
843 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14770105 AAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
14770170 CATGTAGCACCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACC
65 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA------C--CCCCCCCGATCGCCGGAACC
** * * ** * * *
14770235 CCAATGCCATCGGACAGGTTCTCCGGTGATGCTCTGGTGATGGTGCCCTGGCGAAGAAAAATGCA
122 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAA-AAAAATGCG
* * * ** * *
14770300 GCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTGGACT
186 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACT
* * *
14770365 AGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATG
251 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
14770430 AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGGTGCGTAAACCGGGGATCGGTCGGGTCCCCC
316 AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCC
* ** * * * *
14770495 TCTACATGATATCAATCCTACTGCTGCAATCCTCTATCC-GTCTGATCTTAGACTGGGAATGAAC
381 TCTACATGCTGCCGATCCTGCTGCTGCAACCCTCAATCCTGTCTGATCTTAGACTGGGAATGAAC
** * * * * * *
14770559 TCTATACGCCTAAGCCAACCGATGAAATGAGCGGGCGGACGGGCGGGCGGGCACTATGCTGGCCA
446 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCA
*
14770624 GAGAGACGGGATGCGCAAGCCGTGGATCGAT-GGGTGGTTGGTGGGTTTAGGCACATCTTCATAT
510 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
14770688 TTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACAT
575 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
** * *
14770753 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTCGAAACTTTTTACGGTTCAG
640 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAA
* * * * *
14770818 GATTTTTTAAAATTTTTTCAGAAGGATTTTTGGGCCCAAACTTGGTAGACGTGATACTTGTCTTT
705 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * *
14770883 TTGTTGGTAGGCACAAAAAATTTCACCTAAAAACTCAAAGTGTACAAGATTTAGTGACCATTTGA
770 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* * *
14770948 AAAAAGTGTCCCCATTTTAGACGCTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
835 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * * *
14771007 AAATGCTCCTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAAGGGGCTAATATAAGGGC
1 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
14771072 CAAGCACCAGCAGCCACCACACATCATGTGCGCACACCGCCCGGCCCCCCGATCGCCGGAACCCC
65 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CC--CCCCCCGATCGCCGGAACCCC
* * *
14771137 AATGCCG-CGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCTGC
124 AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAA-AAAAATGCGGC
* * * *
14771201 ATCAGCACATGCCCGAGCCCATCATGTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGG
188 ACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG
* *
14771266 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
253 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
14771331 CGTGCGGGCGCTCAACCGGCAATAGGGGCGGGATGCGTAAG-CTGTGGATCGGTCGGGTCCCCCT
318 CGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGGTCGGGTCCCCCT
* * * **
14771395 CTGCATGCTGCC-A-----------CAACCCTCGAT-TTGGTCCAATCTTAGACTGGGAATGAAC
382 CTACATGCTGCCGATCCTGCTGCTGCAACCCTCAATCCT-GTCTGATCTTAGACTGGGAATGAAC
* *
14771447 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACGA
446 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCA
*** * *
14771512 GAGAGATTTGATGCGCAAGCTGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATAT
510 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * *
14771577 TTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATTCAATGGTCCCTTAAGCCTTCACGT
575 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
14771642 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGA
640 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAA
* *
14771707 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTT
705 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * *
14771772 TTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGA
770 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
* * *
14771837 AAAAAGTGTCCCCCTTTCAGATACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
835 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
14771896 AAATGCTATTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGC
1 AAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
14771961 CAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCTGGCCCCCCGATCGACGGAACCCC
65 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CC---CCCCCCGATCGCCGGAACCCC
* * * * * * *
14772026 AATGCCGCCGGTTAGGTTCCCCGGTGATGCTTCGGCGATGGTGCCCCGATGAAAAAAAAAGTGGC
124 AATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG-AAAAAAATGCGGC
* * * * * *
14772091 ACCAGCATATGCCCGAGCCCAGCATGTGCTGCCGCAACCATC-GATTTGGTATGATCTTAGACGG
188 ACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTG
* * * *
14772155 GGAATGAACTCTGTATGCTTAGACTGCGAATGAACTCTGTATGCCTAAGGCAACCCACGAAACGA
252 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * ** * *
14772220 GCGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGACCAGGTCCACCT
317 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCT
* * * * ** * * *
14772285 CTACACGCTGCAGAACCTGCTACTGCAACCCTCGGTCCAGTCTAATCTTAGATTGGGAATGAACT
382 CTACATGCTGCCGATCCTGCTGCTGCAACCCTCAATCCTGTCTGATCTTAGACTGGGAATGAACT
* * * * * * *
14772350 CCATATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGAGCGGGTGAGCACCACGTCGGCTAG
447 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GCGGGCGGGCACTACGCCGGCCAG
* * *
14772415 AAAGACGGGATGCGCAAGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
511 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
14772470 NNNNNNNNNN
Statistics
Matches: 2842, Mismatches: 360, Indels: 103
0.86 0.11 0.03
Matches are distributed among these distances:
887 9 0.00
888 121 0.04
889 675 0.24
890 478 0.17
891 149 0.05
892 133 0.05
894 2 0.00
897 1 0.00
898 5 0.00
899 264 0.09
900 57 0.02
901 385 0.14
902 549 0.19
903 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (893 bp):
AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGATCGCCGGAACCCCAATGCCG
CCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAAAAAATGCGGCACCAACAC
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACATGCT
GCCGATCCTGCTGCTGCAACCCTCAATCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
Found at i:14771285 original size:26 final size:26
Alignment explanation
Indices: 14771256--14771308 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14771246 CTGGTCCGAT
14771256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14771282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14771308 C
1 C
14771309 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14772177 original size:26 final size:26
Alignment explanation
Indices: 14772146--14772198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14772136 TTGGTATGAT
*
14772146 CTTAGACGGGGAATGAACTCTGTATG
1 CTTAGACGGCGAATGAACTCTGTATG
*
14772172 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACGGCGAATGAACTCTGTATG
14772198 C
1 C
14772199 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACGGCGAATGAACTCTGTATG
Found at i:14775954 original size:26 final size:26
Alignment explanation
Indices: 14775918--14775968 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14775908 GGTCCGATCC
*
14775918 TAGATTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
14775944 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
14775969 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14776792 original size:26 final size:26
Alignment explanation
Indices: 14776763--14776815 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14776753 CCGGTCTGAT
* * *
14776763 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14776789 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14776815 C
1 C
14776816 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14777685 original size:26 final size:26
Alignment explanation
Indices: 14777649--14777699 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14777639 GGTCCGATCC
*
14777649 TAGATTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
14777675 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
14777700 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14781828 original size:25 final size:27
Alignment explanation
Indices: 14781777--14781829 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
14781767 CCGGTCCGAT
*
14781777 CTTAGGACTGGGAATGAACTTCATATG
1 CTTAGGACTGGGAATGAACTCCATATG
* *
14781804 CTTA-GACTGGGGAT-AACTCCGTATG
1 CTTAGGACTGGGAATGAACTCCATATG
14781829 C
1 C
14781830 CTAAGTAACC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.43
26 9 0.39
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGGACTGGGAATGAACTCCATATG
Found at i:14783632 original size:26 final size:26
Alignment explanation
Indices: 14783584--14783634 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14783574 TGGCCCGATC
**
14783584 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACCCCGTATGT
14783610 TTAGACTGGGAATGAACCCCGTATG
1 TTAGACTGGGAATGAACCCCGTATG
14783635 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACCCCGTATGT
Found at i:14787192 original size:26 final size:26
Alignment explanation
Indices: 14787163--14787215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14787153 CCTGTCCGAT
*
14787163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
14787189 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
14787215 C
1 C
14787216 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:14787583 original size:903 final size:900
Alignment explanation
Indices: 14781039--14789333 Score: 9915
Period size: 903 Copynumber: 9.2 Consensus size: 900
14781029 GCCCAGCATG
* * * * * *
14781039 TGCTGTCGCAACGCTTGGTCTGGTCTGATCTTAGATTAGGAATGAACTGCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * ** * * *
14781104 CTGACGAAATGAGTTGGCGAGC-GGC-G-GGCACTACGTCGACCAGAGAGACGGGATGCACAAGC
66 CCGACGAAACGAGCGGGCGGGCGGGCGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
14781166 CGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATTTTTCT--ATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
14781229 TTTATGGCTTGTAAATTCATACAGTGG-CTCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
14781293 CTCGATTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTCAAATTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * *
14781358 GAAAGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCCTGCATAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14781423 AGTCAGTTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14781488 ACACCTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGGTGTGAGT
* * * * * *
14781553 TCT--TGATTT-ATAAGGGATAGGGGGAC-ATATAGGGGCCCAAGTA-CAGCACCCATCACACAA
520 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCGCAC-A
* * * *
14781613 TCATGTGCGCCCACCCCCTGGGTCCCCCCTGATCGCCGGAACCCCAAATGTCGTCGGTC--G-TC
583 TCATGTGCGCACACCCCC-CGG-CCCCCCCGATCGCCGGAA-CCC-AATGCCGTCGGTCAGGTTC
** * * *
14781675 TCCGATGATGCTCTGGCGATGGTGCCCC-GCGAAGAAAAAATACGGGGCACCAACACATGCCCGA
644 TCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAG-AAAAAT--GCGGCACCAGCACATGCCCGA
* * * *
14781739 G-CCAGCATGTGC-GCCGTATAACCTCGGTCCGGTCCGATCTTAGGACTGGGAATGAACTTCATA
706 GCCCAGCATGTGCTGCCGTA-ACCCTCGGTCCTGTCCGATCTTA-GACTGGGAATGAACTCCGTA
*
14781802 TGCTTAGACTGGGGAT-AACTCCGTATGCCTAAGT-AA-CCACAGAAACGAGCGTGCGAGGTTCG
769 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCG-GG--CG
* * * * * *
14781864 -TCAGCCAGCCAGAGAGGCAGGATGGCGTAAGCCGAGGATC-GTCGGGTCCCCCGTCTAGGTGCT
830 CTCAGCCGGCCAGAGGGGCGGGAT-GCGCAAGCCGGGGATCGGTCGGGTCCCCC-TCTACGTGCT
* *
14781927 CTCAATCC
893 GTCGATCC
** * * *
14781935 TGCTTGCCGCAA-CCTATGTCCGGTCTGATCCTTAGGACTGGGAAT-AACTTCATATGCCTAAAA
1 TGC-TGCCGCAACCCTCGGTCTGGTCTGAT-CTTA-GACTAGGAATGAACTCCATATGCCT--AA
* * * * * * * *
14781998 G-C-ACCGATGAAATGAGCGAG-AGGCGAGC-G-GGCAATACGCCGGTCAGAGAGACGGGATGCG
61 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGCACTACGTCGGCCAGAGAGACGGGATGCG
* *
14782058 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
126 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
14782123 CCATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAA
191 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * ** * *
14782188 GACGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGACTCGAGATTTTTTAAAATCT
256 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
14782253 TTTCGGAAAGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCACATGCAC
321 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG-GCATGCAC
* * *
14782318 AAAAAAATTCAACTAGAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCA
385 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
14782382 TTTCATACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCT-TTTTAAGAGGAT
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG-GGGT
** *
14782446 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCG
514 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
14782511 CACATCATGTGTGCACACCCCCCGGCCCCCCCGATC-CC-GAACCCAATG-C--CGGTCAGGTTC
579 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCAATGCCGTCGGTCAGGTTC
** * *
14782571 TCCGGCGATGCTCCGGCGATGGTGCCCC-ATGAAGAAAAATG-TGCACCAGCACATGCGCGAGCC
644 TCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
**
14782634 CAGCATGTGCTGCCG-AACCCTCGGTTTTGGTTCCGATCCTTAGACTGGGAATGAACTCCGTATG
709 CAGCATGTGCTGCCGTAACCCTCGGTCCT-G-TCCGAT-CTTAGACTGGGAATGAACTCCGTATG
*
14782698 CTTAGGACTGGGCAATGAACTCTTTCCGTATGCCTAA-TCAACCCACGAAACGAGCGTG-TGG-G
771 CTTA-GACTGGG-AATGAA--C--TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
14782760 --CAGTC-G-CAGA-GGGCGGGATGCCGCAAG-CGGGGATCGGTAGGGT-CCCCTCT-GGTGCTG
830 CTCAGCCGGCCAGAGGGGCGGGATG-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG
14782817 -CGATCC
894 TCGATCC
* * *
14782823 TGCT--CGCAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAAATGCACTCCGTATG-CTAAGCCA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGG-AATGAACTCCATATGCCTAAGCCA
* *
14782884 ACCGACG-AACGAGCGGGCAGGCGATCGGGCGGGCGGGCACTACGACGGCC-GAGAGACAGGATA
65 ACCGACGAAACGAGCGGGC-GG-G--CGGGC-GGC-GGCACTACGTCGGCCAGAGAGACGGGAT-
* * * * * *
14782947 GCGCAGGCCGTTGATCGATAGGTGGCGGTCGGT-GGTTTGGGCACATCTTCATATTTTTCTGGCA
123 GCGCAAGCCGTGGATCGATA-G-GGTGGTAGGTGGGTTTAGGCACATCTTCATA--TTTCT-ACA
* *
14783011 TG-CAATGCCAATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTTACGTGAAGTT
183 TGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * * *
14783075 TTATGGCGAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTCT
247 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* *** *
14783140 TTAAAA-GTTTTTGGAAGGAGTTTTCAACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
312 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
14783204 GCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAG
377 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
** * * * * *
14783269 TGT-CCCATTTTCAGACACTTTAGCGGCTAGTGGCAGCAAACGTATAGAATCTCAATTGCTCTTT
442 TGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
14783333 AAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
506 AAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
14783398 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT-GTCGGAACCCTAATGCCGCCG
571 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC-AAT---GCC-
* * *
14783462 GTCAGGTTCTCTGGCGATTCTCCGGCGATGCTCCTGCGATGGTGCCCCGGCGAAGAAAAATGCGA
631 GTC-GG---TC-AG-G-TTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGG
* * * * *
14783527 CACCAACACATGCCTGAGCCCAGCATGTGCTGCCATAACCCTTGGT-CTGGCCCGATCTTAGACT
689 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCT-GTCCGATCTTAGACT
* * * * *
14783591 GGGAATGAACTTCGTATGTTTAGACTGGGAATGAACCCCGTATGGCTAAGTCAACCCATGAAACG
753 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
14783656 AGCGTACGGGAGCTCAGCCGGCTAGAGGAGCGAGATGCGTAAAGCCAGGGATCGGTCGGGTCCCC
818 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGGTCGGGTCCCC
* * * ** *
14783721 TTCTGCATGCTACCAATCC
882 CTCTACGTGCTGTCGATCC
* * * * * * * *
14783740 TACTGTCGTAACCCTCGGTTTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCCAAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * * * *
14783805 CCGACAAAAAGAG-TGGC-GGCGGCCGGCAGGCGCTACGCCGGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGC-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
14783868 CGGTGGATCGATA-TGTGGTAGGT-GGTTTA-GCACATCTTCATATTTCTGCCTGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
14783930 TTTTATGGCTTGTAAAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 TTTTATGGCTTGT-AAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14783995 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAATTTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
14784060 TTGGAAGGATTTTTGGCCCCAAACTT-CTCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
323 TTGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
14784124 AAAAATTCAGCTAAAAATTTGAAGTGTAAAATATTTT-TGACCATTTGAAAAAGGTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14784188 TTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
* * * *
14784253 AGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCAT
517 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
14784318 ATCATGTGCGCACACCTCCCCTCCGG-CCCCCTGATCACCGGAATCCCGATACCGTCGATCAAGT
582 ATCATGTGCGCACA---CCCC-CCGGCCCCCCCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGT
* * * * * *
14784382 TCT-C--CGA--------CGATGGTGCCCCGACAAAGAAAAATGCGACACCAACACTTGCCCCAG
642 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * * *
14784436 CCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATAG
707 CCCAGCATGTGCTGCCGTAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTAT-G
* * *
14784501 -TTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTTAGC
771 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14784565 CGGCCTGAGGGGCGGGATGCGCAAGCTGGGGATCGG-CTGGGTCCCCCCTCTGCGTGTTGTCGAT
836 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGT-CCCCCTCTACGTGCTGTCGAT
14784629 CC
899 CC
* *** *
14784631 TGCTGCCGCAACCCTCGATCCAATCTAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* *
14784696 CCGACAAAACGAGCGGGCGTGCGGGC-G-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGCGGGCGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
** *
14784759 AATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*
14784824 TTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
14784889 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
261 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
* * * *
14784954 AAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGTATGCATAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
14785018 ATTCAAG--AAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
391 ATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14785081 GACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTT-AAGGGTGTGTGAG
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTGAG
* *
14785145 TTCTCAAGGTTTGATCGA-GGATAGGGGGCAAATACAAGGGCCAAGTACCAGCACCCATCGCACA
519 TTCTCAAGGTTTGAT-GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14785209 TCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGTTTCTCC
583 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTCTCC
* * ** * *
14785274 GGCGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGGGGCACCAGCACATGCCCGAGCCTAG
647 GGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14785339 CATGTGCTGCCGTAACCATCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
712 CATGTGCTGCCGTAACCCTCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * ** * * * *
14785403 ATTGGGAATGAATTTCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTTAGTCGACC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * **
14785468 AGAGGGGCGGGATACGCAAGCCGGGGATCGATCGGGTCACCCTATGCGTGCT-ACAGGCCC
841 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCC
* * * * *
14785528 TACTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
14785593 CCGATGAAACAAGCGGGCAGGCAGGCGAGCGGGCACTACG-CTGACCAGAGAGACGGGATGCGCA
66 CCGACGAAACGAGCGGGCGGGCGGGCG-GC-GGCACTACGTC-GGCCAGAGAGACGGGATGCGCA
* *
14785657 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
14785722 ATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14785787 TGACTCGTTCTCTATTTTTCAAGATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTACCAATTTT
258 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA-AAATTTT
* *
14785851 TTTGGAATGGAGTTTTGGCCCCAAACTTGCTGGACGT-ATCCTTGTATTTTTGTTGGCATGCACA
322 TTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14785915 AAAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14785980 TTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
* * * * *
14786045 GAGTTCTCGATGTTTGATGAGGGAT-GGTGGCCAATATAAGGGCGAAGTACCAGCACCCATCACA
516 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * ** *
14786109 CATCATATGCGCACACCCCCCCGACCCCACCGATCGCCGAAACCCCAATGCCACCTGTCAGGTTC
581 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTC
** ** * *
14786174 TCCGATGATGCTCCGGCGATGGTGTACCAGCG-AGAAAAAGTGTGGCACCAGCACCAGTGCCCGA
644 TCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAA-TGCGGCACCAGCA-CA-TGCCCGA
* * * *
14786238 GCCCAGCATGTGCTGCCGCATACCCTCAGGT-TTGATCCGATCTTAGACAGGGAATGGACTCCGT
706 GCCCAGCATGTGCTGCCGTA-ACCCTC-GGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
14786302 ATGC-----C------T----T--G-A----T--GTCAA-CCATGAAATGA-CGTGTCGGCCACT
768 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCT
* * * * * *
14786341 CAGCCGGCCAGAGGGGTGGGTATGCGCAAGTCCGGGGGTCGATAGAGTCCCCCTTCTGCGTTTGT
832 CAGCCGGCCAGAGGGGCGGG-ATGCGCAAG-CCGGGGATCGGTCGGGTCCCCC-TCTACG--TG-
*
14786406 CTGTCGATCT
891 CTGTCGATCC
* * * * **
14786416 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
14786481 CCGACGAAATGAGCGGGCGAGCGGGCGGGCGGGCACTACCTCGGCCAAAGAGACGGGATGCGTAA
66 CCGACGAAACGAGCGGGCGGGCGGGC-GGC-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** *
14786546 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTGCTATGTGTCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
14786611 TTTTTATGGCTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
14786676 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14786741 TGGAAGGAGTTTTGGCCCAAAACTTGGTGGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
324 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
14786805 AAATTCAGCTAAAAACTCAAAGTTTACAATATTTTGTGACCATTTGAAAAAAGTGTGCCCATTCC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14786870 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
*
14786935 TTCTCAAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * *
14787000 CATGTGCGCACACCCCCCTGGCCCCCCTGATCGTCGGAACCGCAATGCCACCGATCAGGTTCTCT
584 CATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACC-CAATGCCGTCGGTCAGGTTCTCC
* * * * *
14787065 GGCGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCGG
647 GGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14787130 CATGTGCTACTGTAACCCTCGATCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
712 CATGTGCTGCCGTAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
14787195 CTGGGAATGAACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCAGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* *
14787260 GAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCC
842 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * *
14787319 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCTTATGCCTAAGCCAT
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * **
14787384 CCTACGAAACGAGCGGGCGGGTGGGCGGACGAACACTACGTCGGCCAGAGAGACGATATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGG-CG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
14787449 GCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGGACATCTACATATTTCTACGTACCAATGCTA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * * *
14787514 TTTTTATGGCTTGTAAATTCATACAATGCTCCTTTAAGCCTTCACGTGAAGTTTCATGGCGACAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * *
14787579 GACTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTACGGTTTGTGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14787644 CGGAAGGAGTTTTGGCCCCAAA-TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
14787708 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14787773 AGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGTGTGTGA
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTGA
* * * * **
14787837 GTTCTCAAGGCTTGATAAGCGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACGTATCGCACA
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14787902 TCATGTGAGCACACCCCCCCAGCCCCTCTGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTT
583 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
14787967 TGGCGATCCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGCACATGCCTGAGCCCA
646 CGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
14788032 GCATGTGCTGTCGCAACCCTTGGATCC-ATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTA
711 GCATGTGCTGCCGTAACCCTCGG-TCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
14788096 GACTAGAAATAAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
** * * * *
14788161 CAGAGGGGCGGGATGCATACGCTGGGGATCGGTTGGGTCCCCCTCTACAT-CTGTCGATCC
840 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * ** *
14788221 TGTTACAGCAACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTTCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * * *
14788286 CCGATGAAATGAGCAGGCGGGCAGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGCGGGCGG-C-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
14788351 GCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGGACATCTACATATTTCTCCATGCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
**
14788416 TTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
14788481 GACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTATGGTTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14788546 TGAAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
324 TGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
14788611 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
14788676 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGTGTGTG
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG-GTGTG
* * *
14788740 AGTTCTCGAA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCTATTGCA
517 AGTTCTC-AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
14788804 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCAAATG-CGATCGGTCAGGTTC
581 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC-AATGCCG-TCGGTCAGGTTC
** * * * *
14788868 TCCTACGATGCTCCAGCGATGGTGCCCCAGCGAAGAAAAATACGACACC-GACACATGCCCGAGC
644 TCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG-CACATGCCCGAGC
* * *
14788932 CTAGCATGTGCTGCCGCAACCCTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
708 CCAGCATGTGCTGCCGTAACCCTCGGTCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14788996 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGGGTGCTCAGCC
772 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * **
14789061 GGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
837 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * * *
14789125 TGTTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACACCATATGCCTAAGACAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
* * *
14789190 CCGATGAAACGA----GCGGGCGGGC-G-GGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGCGGGCGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
14789249 CGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
14789314 TTTATGGCTTGTAAATTCAT
196 TTTATGGCTTGTAAATTCAT
14789334 CTTGCCATGA
Statistics
Matches: 6388, Mismatches: 794, Indels: 434
0.84 0.10 0.06
Matches are distributed among these distances:
881 4 0.00
882 35 0.01
883 29 0.00
884 66 0.01
885 42 0.01
886 27 0.00
887 230 0.04
888 423 0.07
889 64 0.01
890 241 0.04
891 430 0.07
892 89 0.01
893 93 0.01
894 99 0.02
895 236 0.04
896 295 0.05
897 217 0.03
898 195 0.03
899 70 0.01
900 241 0.04
901 294 0.05
902 505 0.08
903 1221 0.19
904 329 0.05
905 42 0.01
906 30 0.00
907 75 0.01
908 32 0.01
909 293 0.05
910 124 0.02
911 71 0.01
912 33 0.01
913 56 0.01
914 59 0.01
915 21 0.00
916 4 0.00
917 9 0.00
918 1 0.00
919 17 0.00
920 41 0.01
921 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCAATGCCGTCGGTCAGGTTCTCCGGCG
ATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGTAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
Found at i:14788097 original size:26 final size:26
Alignment explanation
Indices: 14788068--14788121 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14788058 CATCCGATCT
* * *
14788068 TAGACTGGAAATGAACTCCGTATGCC
1 TAGACTAGAAATAAACTCCATATGCC
14788094 TAGACTAGAAATAAACTCCATATGCC
1 TAGACTAGAAATAAACTCCATATGCC
14788120 TA
1 TA
14788122 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (26 bp):
TAGACTAGAAATAAACTCCATATGCC
Found at i:14789007 original size:26 final size:26
Alignment explanation
Indices: 14788969--14789021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14788959 CTAGTCTGAT
*
14788969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14788995 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14789021 C
1 C
14789022 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14789729 original size:25 final size:25
Alignment explanation
Indices: 14789695--14789742 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14789685 GTTGACCTAG
14789695 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
*
14789720 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCCCAGTC
14789743 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:14790645 original size:26 final size:26
Alignment explanation
Indices: 14790595--14790646 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14790585 GTTGACTTAG
* *
14790595 GCATACGGAGTTCATTCCGAATCTAA
1 GCATACGGAGTGCATTCCCAATCTAA
*
14790621 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAATCTAA
14790647 TATCGGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAATCTAA
Found at i:14791535 original size:26 final size:26
Alignment explanation
Indices: 14791499--14791549 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14791489 TTGACTTAGG
*
14791499 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
14791525 ATACGGAGTTCATTCCCCGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
14791550 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:14793634 original size:26 final size:25
Alignment explanation
Indices: 14793594--14793644 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
14793584 GTTGACTTAG
14793594 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
14793619 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
14793645 TATCGAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:14794534 original size:26 final size:26
Alignment explanation
Indices: 14794494--14794546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14794484 GTTGACTTAG
*
14794494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14794520 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14794546 G
1 G
14794547 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:14795062 original size:910 final size:892
Alignment explanation
Indices: 14793123--14795935 Score: 3721
Period size: 910 Copynumber: 3.1 Consensus size: 892
14793113 CTAAGATAGA
* * * * *
14793123 CCAACAAAAATGCAAGGATCATGTCTACCAATTTTGGGACCAAAACTCC-T--GAAAAAATTTTA
1 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
14793185 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
14793250 AAACTTCACGTGAAGTCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
131 AAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
14793315 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCC
196 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
14793380 GTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCTGCTCGT-T--TC--G-TCAGTTGGCTTAGGCAT
261 GTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGTCTCCTCATGCTCGGTTGGCTTAGGCAT
* ** * * *
14793439 ACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACTGAGGGTTGCGGCAGTAGGATTGGCAGCA
326 ACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGTTC-GAGGGTTGCGGCAGCAAGATCGGCAGCA
* * *
14793503 CGCAGAGGGGGACCCGATCGAT-CCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCT
389 CGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCACCC
* *
14793567 ATACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAAGTT
453 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
14793631 CATTCCTAGTCTAATATCGAACT-GAACCGA-GGTTACGGTAGCACATGCTAGGCTCGGACATTT
518 CATTCCCAGTCTAAGATCGAACTAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGT
*
14793694 GTTGGTGCCACA-TTTTCTTC-GTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGG
582 GTTGGTGCCACATTTTTCTTCACT-GGGGCACCAT---C-GAGCATCGT-GGAGAACCTGACCGG
* * * *
14793757 CGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTACAATGGGTGC
641 CGGCATT-GGGTTCCGGCTATCGG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
14793822 TGGTTCTTGGCCCTTATATTGG-CCCCTATCCTCATCAAACCTGGAGAACTCACACCCCCTTAAA
704 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
14793886 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
769 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
14793951 TTTCAAATGGTCACAAAATCTTCTACACTT-CGAGTTTTTAGCTGAA-GTTTTTTGTGCGTG
834 TTTCAAATGGTCACAAAATCTTGTACACTTCCAAG--TTTAGCTGAATG-TTTTTGTGCATG
* *
14794011 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
1 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * *
14794076 AAAAATCCTGAGCCGCAAAACGTTTCAAAAATCGA-GAAAAATAGAAAACGAATTGTCTTGCCAT
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-ATAAAAAATAGAAAACGAGTCGTCTTGCCAT
*
14794140 GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGC
130 GAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
14794205 ACGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCC
195 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
***
14794270 CGTCTCTCTGGCCTATGTAGTGCTCGCCCGCCCGCCCGTCTACCATCATGCCATCGGTTGGCTTA
260 CGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGTCT-CC-TCATG-C-TCGGTTGGCTTA
* * * * *
14794335 GGCATACGAAGTTCATTCCCAGTCTAAGATCGACCGGTTCAAGGGTTGCAGCAACAAGATCGGTA
321 GGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGTTCGAGGGTTGCGGCAGCAAGATCGGCA
* * * *
14794400 GCACCCAGAGGGGGACCTGATCGATCCCTGGCTTGCGCATCCCGCCCCCCTGACCAGCTGAGCAC
386 GCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCAC
*
14794465 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
451 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *
14794530 CTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GAGCAT
516 TTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGA-CAT
* * *
14794594 GTGTTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTTGAAGCATCGTTGGAGAACTTGACCA
580 GTGTTGGTGCCACATTTTTCTTCACTGGGGCACCATC---G-AGCATCG-TGGAGAACCTGACCG
* *
14794659 ACGGCATTGTGGTTCCGGCTATCGGGGGGGCGAGGGGGGGTGTACGCACATGATGTGCGATGGGT
640 GCGGCATTG-GGTTCCGGCTATCGGGGGGGC--GGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
14794724 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
702 GCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
14794789 AAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACAC
766 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** *
14794854 TTTTTTCAAATGGTCACAAAATACAAGGATCACGTCTGCCAAGTTTAGCTGAATGTTTTTGTGCA
831 TTTTTTCAAATGGTCACAAAAT-CTTGTA-CAC-T-T-CCAAGTTTAGCTGAATGTTTTTGTGCA
14794919 TG
891 TG
* **
14794921 CCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGTTGCCAAAACTCCTTCCGAAAAAATTTTA
1 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
** * * * * *
14794986 AAAAATATCGAACCGTAAAAAGCTTCGAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATG
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATG
*
14795051 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
131 AAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
14795116 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCAACCC
196 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
14795181 GTCTCTCTGGCCGGCGTAGTGGC-CGCCCGCCCGCTC-TCCCGCTCATTTCGTCGGTTGGCTTAG
261 GTCTCTCTGGCCGGCGTAGT-GCTCGCCCGCCCGCCCGTCTC-CTCA-TGC-TCGGTTGGCTTAG
* * * * * *
14795244 GCATACGGAGTTCATTCCTAGTCTAAAATCTGACCGAATT-GAGGGTTACGGTAGCAAGATCGAC
322 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCG-GTTCGAGGGTTGCGGCAGCAAGATCGGC
* ** *
14795308 AGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGTCCCTCT-AGCCGGCTGAGC
385 AGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGA-CCGGCTGAGC
* *
14795372 ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
449 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
14795437 AGTTCATTCCCAGTCTAAGATCAGACCGA-ATCGAGAGTTACGGCAGCACATGCTGGGCTCGGAC
514 AGTTCATTCCCAGTCTAAGATC-GAACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGAC
* * ** *
14795501 ATGTGTTAGTGCCACATTGTTCTTCACCAGGGCACCATC--GC--C--GAAGAACCTGACCGGCG
578 ATGTGTTGGTGCCACATTTTTCTTCACTGGGGCACCATCGAGCATCGTGGAGAACCTGACCGGCG
* *
14795560 GCATTAGGGTTCCGG-TGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
643 GCATT-GGGTTCCGGCT-ATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
14795624 GTACTTGGCCCTTATATTGGCCCACTATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
706 GTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
14795689 AGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTT
770 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * ** *
14795754 TTCTAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATG
835 TTCAAATGGTCACAAAATCTTGTACACTTCCA-AGTTTAGCTGAATGTTTTTGTGCATG
* *
14795813 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
1 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * ** * *
14795878 AAAAATCTCGAATCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCT
66 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCT
14795936 GGCAGACGTA
Statistics
Matches: 1696, Mismatches: 179, Indels: 96
0.86 0.09 0.05
Matches are distributed among these distances:
888 45 0.03
889 1 0.00
891 224 0.13
892 136 0.08
893 1 0.00
894 3 0.00
895 3 0.00
896 174 0.10
897 1 0.00
898 37 0.02
899 1 0.00
900 111 0.07
901 102 0.06
902 45 0.03
903 60 0.04
904 54 0.03
905 7 0.00
906 114 0.07
907 2 0.00
908 49 0.03
909 227 0.13
910 293 0.17
911 3 0.00
912 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGTCTCCTCATGCTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGACCGGTTCGAGGGTTGCGGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCACCCACA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGAACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTGTTG
GTGCCACATTTTTCTTCACTGGGGCACCATCGAGCATCGTGGAGAACCTGACCGGCGGCATTGGG
TTCCGGCTATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCCAAGTTTAGCTGAATGTTTTTGTGCATG
Found at i:14795433 original size:26 final size:26
Alignment explanation
Indices: 14795403--14795455 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14795393 GTTGACTTAG
14795403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14795429 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14795455 G
1 G
14795456 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14796179 original size:26 final size:26
Alignment explanation
Indices: 14796149--14796201 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14796139 GTTGACTTAG
* *
14796149 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
14796175 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14796201 G
1 G
14796202 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:14797745 original size:26 final size:26
Alignment explanation
Indices: 14797709--14797760 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797699 GTTGATTTAT
*
14797709 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14797735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14797761 TATCAAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14798640 original size:25 final size:25
Alignment explanation
Indices: 14798612--14798661 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14798602 TTAAGCATAC
*
14798612 GGAGTTCATTCCCAGTCTAAGATCG
1 GGAGTTCATTCCAAGTCTAAGATCG
14798637 GGAGTTCATTCCAAGTCTAAGATCG
1 GGAGTTCATTCCAAGTCTAAGATCG
14798662 AACCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
GGAGTTCATTCCAAGTCTAAGATCG
Found at i:14799488 original size:26 final size:26
Alignment explanation
Indices: 14799452--14799504 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14799442 GTTGACTTAG
14799452 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14799478 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14799504 G
1 G
14799505 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14799491 original size:847 final size:849
Alignment explanation
Indices: 14796978--14800236 Score: 3389
Period size: 847 Copynumber: 3.7 Consensus size: 849
14796968 ACCTAACCGG
* *
14796978 CGGCATTGGGGTTCCGACGATTGGGGGGCC--AGGGGGTGTGCGCACATGATGTGCAATGGGTGC
1 CGGCATTGGGGTTCCGACGATT-GGGGGCCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
14797041 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATTAAACCTCTAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
14797106 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * * *
14797171 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAGTTTTTTTATGCATGCGAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGA-ATTTTTTATGCATGCCAA
**** * * *
14797236 AAAAAATACAAGGATTGCGTCTGCCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
258 AAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
14797301 ATCCCAAACCATAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
* * *
14797366 TTCACGGGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
* * * * *
14797431 AAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTTCGCATCCCGTCA
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCT
* * * ** * *
14797496 CTCTGGCCGGCGTAGTG--CCCACCTACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
518 CTCTTGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCCCGCT-TTTTCATCGGTTGGCTTAGGCAT
* * * * * * * * * *
14797559 ACGGAGTTCAGTCCCAGTCCAAGAT-TG---GATCGAGGGTT-ACGACAGCAGGATCGGCAGCAT
582 ACGGAGTTCATTCCTAGTCTAAGATCAGACAGACCAAGGGTTGA-GACAGAACGATCGACAGCAA
* * * * * * * * * *
14797619 GCAGAGGGGGACCCGGCTGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGACTGAGCGCTCGC
646 GCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGGCTAAGCGCCCGC
* * * * * *
14797684 ACGTTCGTTTCATGGGTTGATTTATGCATACGGAGTTCTTTCCCAGTCTAAGCATACG-GAGTTC
711 ACGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-CGAGAGTTC
* * * * * *
14797748 ATTCCCAGTCTAATATCAAACTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGC
774 ATTCCAAGTCTAAGATCAGACCGGACCGAGGG-T----CTG-ACA------G--CA--CA--T-C
* * **
14797813 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGG
820 TGG-G-CG-A---------------G---CATCGCCGGAGAACCTGTCCAA
* * * *
14797864 CAGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATAATGTGTGATGGGTG
1 CGGCATTGGGGTTCCGACGAT--TGGGGGCCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
14797927 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCACCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * ** *
14797992 AAGAGCATATGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGCCTCTGAAAATGGGGGCAC
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGGACAC
* *
14798057 TTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGA-GCATGC
193 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAAT-TTTTT-ATGCATGC
* *
14798121 CAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
255 CAAAAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * *
14798186 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGA
320 AAAATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* * *
14798251 AACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTAAAAGCCATAAAAATGGCATTGGCAC
385 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
14798316 GTAGAAATATGAAAATGTGCCTAAACCCACCTACCATCCTATCGATCCAAGGCTTGCGCATCCCG
450 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCG
* **
14798381 TCTCT-TTGGCCGACGTACTGCCCGCCCGCCCGCCCTTCCGCCCGCTCTTTTCATCGGTTGGCTT
515 TCTCTCTT-GCCGACGTAGTG-CC-CCCGCCCGCCCGCCCGCCCGCT-TTTTCATCGGTTGGCTT
* * * * * * *
14798445 AGGCATACGAAGTTCATTCCCAGTCTAAGGTCAGACTAGACCGAGGGTTGCGACAGCAGGATCGA
576 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-AGACCAAGGGTTGAGACAGAACGATCGA
* * * * *
14798510 TAGCAAGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTAGCCGGCTGAGT
640 CAGCAAGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGGCTAAGC
* * *
14798575 GCCCGCATGCTCGTTTAATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGGA
705 GCCCGCACGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAGA
*
14798640 GTTCATTCCAAGTCTAAGATC-GAACCGGACCGAGGGT-T-AC-G-AGAT-TGGG-G-GCATCGC
770 GTTCATTCCAAGTCTAAGATCAG-ACCGGACCGAGGGTCTGACAGCACATCTGGGCGAGCATCGC
14798697 CGGAGAACCTGTCCAA
834 CGGAGAACCTGTCCAA
* * *
14798713 CGGCATTGGGGTTTCGACGATTGAGGGGCCTGGGGGGGTGTGCGCAAATGATGTGCGATGGGTAC
1 CGGCATTGGGGTTCCGACGATTG-GGGGCCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
14798778 TGGTACTTGGCCCTTATATTGACCCCCAATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
14798843 AGAGCATTTGAGACTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTTAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
*
14798908 TTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTGTTTATGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATTT-TTTATGCATGCCAA
* * * * **
14798973 GAAGAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAA-ACCTTTTGAAAAAATTTTAAAAA
258 AAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * * * *
14799036 ATTCTGAACCACAAAAAGTTTTGAATATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAAC
323 ATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
* *
14799101 TTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATATA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
* *
14799166 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCT
* * * *
14799231 CTCTTGCCGGCATAGTGCCCACCTGCCTGCCCGCCCGCACGCTTGTTTCATCGGTTGGCTTAGGC
518 CTCTTGCCGACGTAGTGCCC-CC-GCCCGCCCGCCCGCCCGCTT-TTTCATCGGTTGGCTTAGGC
* * *
14799296 ATATGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGTAG-TAGAACGATCGGCAG
580 ATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGACCAAGGGTTG-AGACAGAACGATCGACAG
* * ** * * *
14799360 C-A-CATAGAGGGGACCCGGCCGATCCCCGGCTTGCACATCCTGCCCTTCTGGTCGGCTAAGCGC
643 CAAGCAAAG-GGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGGCTAAGCGC
* ** *
14799423 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC-AGA
707 CCGCACGCTCGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-CGAGA
*
14799487 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCGTGACAGCACATGCTGGGCTCGAGCAT
770 GTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTC-TGACAGCACAT-CTGGG--CGAGCA-
* *
14799552 GTGCTGATGCCATATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCATCGGAGAA
830 -T-C----G----------C--CG---GAG-A--A-C--C--TG--TC--C----AA
* * *
14799609 CCTGACCGACGGCATTGGGGTTCCGACGATCAGTGGGGTC-GAGGTGGGTGTGCGCACATGATGT
1 ---------CGGCATTGGGGTTCCGACGAT-TG-GGGGCCTG-GGGGGGTGTGCGCACATGATGT
*
14799673 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
54 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
14799738 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCCGAAA
119 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
14799803 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTCTAGCTGAATTTTTTT
184 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT-TAGCTGAA-TTTTTT
* * *
14799868 TTGCATGCCAACAAAAATACAAGGATCATATTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
247 ATGCATGCCAAAAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
14799933 AATTTTAAAAAATGCCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAGAA-GAAGTCGTC
312 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATG-AGTCGTC
* * *
14799997 CTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACTAGCCATAAAAATGG
376 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
14800062 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
441 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTG
* * * * * *
14800127 CCCATCCCGTCTAC-CTGGCCGACGTAGTG--CCCGCCCGCCAGCCCGCCCTCTCATTTCATCAG
506 CGCATCCCGTCT-CTCTTGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCCCGCT-TTTTCATCGG
*
14800189 TTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
569 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CAGAC
14800237 TGAGGGTTAT
Statistics
Matches: 2028, Mismatches: 245, Indels: 182
0.83 0.10 0.07
Matches are distributed among these distances:
845 5 0.00
846 101 0.05
847 329 0.16
848 24 0.01
849 135 0.07
850 135 0.07
851 1 0.00
852 4 0.00
854 4 0.00
857 1 0.00
858 3 0.00
860 1 0.00
861 1 0.00
865 1 0.00
869 1 0.00
871 1 0.00
872 3 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 2 0.00
878 1 0.00
880 2 0.00
881 2 0.00
883 1 0.00
884 1 0.00
886 21 0.01
887 142 0.07
888 316 0.16
889 1 0.00
890 2 0.00
892 61 0.03
893 1 0.00
895 3 0.00
896 36 0.02
897 128 0.06
904 68 0.03
905 27 0.01
906 238 0.12
907 13 0.01
908 208 0.10
909 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (849 bp):
CGGCATTGGGGTTCCGACGATTGGGGGCCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCTGAATTTTTTATGCATGCCAAAAA
AAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTC
TTGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCCCGCTTTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCTAGTCTAAGATCAGACAGACCAAGGGTTGAGACAGAACGATCGACAGCAAGCAAA
GGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGGCTAAGCGCCCGCACGCT
CGTTTAATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAGAGTTCATTCCAA
GTCTAAGATCAGACCGGACCGAGGGTCTGACAGCACATCTGGGCGAGCATCGCCGGAGAACCTGT
CCAA
Found at i:14800687 original size:496 final size:496
Alignment explanation
Indices: 14799752--14800739 Score: 1631
Period size: 496 Copynumber: 2.0 Consensus size: 496
14799742 CCCTTAAAGA
* *
14799752 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCCGAAATGAGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCCAAAATGAGGACACTTTTT
*
14799817 TCAAATGGTCACAAAATCTTGTACACTTCGATTTTCTAGCTGAATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGATTTTCTAGCTGAATTTTTTTTTGCATGCCAAAAA
* * * ** *
14799882 AAATACAAGGATCATATTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATG
131 AAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATC
* *
14799947 CCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAGAAGAAGTCGTCCTGCCATGAAACTTC
196 CCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAAGAAGTCATCCTGCCATGAAACTTC
* *
14800012 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGCAGAA
261 ACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
14800077 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTACC
326 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTACC
* *
14800142 TGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCCTCTCATTTCATCAGTTGGCTTAGGCATACAGA
391 TGGCCAACGTACTGCCCGCCCGCCAGCCCGCCCTCTCATTTCATCAGTTGGCTTAGGCATACAGA
14800207 GTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTATG
456 GTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTATG
* * * *
14800248 GCATTTGAGATTTTATAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCCAAAATGAGGACACTTTTT
* *
14800313 TCAAATGGTTACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTTTGGATGCCAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTCTAGCTGAATTTTTTTTTGCATGCCAAAA
* * *
14800377 AAAATACAAGGATCACGTCTAACAAGTTTGGGGCGAAAAAACCTTCTGAAAAAATTTTAAAAAAT
130 AAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAAT
* * *
14800442 CCCCAACCTCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACG-AGTCATCTTGCCATGAAACT
195 CCCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAA-GAAGTCATCCTGCCATGAAACT
*
14800506 TCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
259 TCACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
14800571 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTA
324 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTA
* *
14800636 TCTGGCCAACGTACTGCCCGCCCGCCAGCCCG-CCTGCTCATTTCGTCAGTTGGCTTAGGCATAC
389 CCTGGCCAACGTACTGCCCGCCCGCCAGCCCGCCCT-CTCATTTCATCAGTTGGCTTAGGCATAC
* *
14800700 GGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGT
453 AGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGT
14800740 CCTCATAGCA
Statistics
Matches: 456, Mismatches: 33, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
495 3 0.01
496 448 0.98
497 5 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (496 bp):
GCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGCCCAAAATGAGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGATTTTCTAGCTGAATTTTTTTTTGCATGCCAAAAA
AAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAAAACCTTCCGAAAAAATTTTAAAAAATC
CCAAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAAGAAGTCATCCTGCCATGAAACTTC
ACGTGAAGGCTTAAAGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTACC
TGGCCAACGTACTGCCCGCCCGCCAGCCCGCCCTCTCATTTCATCAGTTGGCTTAGGCATACAGA
GTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTATG
Found at i:14800881 original size:26 final size:26
Alignment explanation
Indices: 14800852--14800904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14800842 GTTGACTTAG
14800852 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
14800878 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
14800904 G
1 G
14800905 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:14804234 original size:26 final size:26
Alignment explanation
Indices: 14804205--14804257 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14804195 CTGGTCCGAT
14804205 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14804231 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14804257 C
1 C
14804258 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14805126 original size:26 final size:26
Alignment explanation
Indices: 14805095--14805147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14805085 TTGGTATGAT
*
14805095 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGCGAATGAACTCCGTATG
* *
14805121 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACGGCGAATGAACTCCGTATG
14805147 C
1 C
14805148 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGGCGAATGAACTCCGTATG
Found at i:14805806 original size:901 final size:898
Alignment explanation
Indices: 14801281--14807188 Score: 7234
Period size: 890 Copynumber: 6.6 Consensus size: 898
14801271 CATCAAACAA
* *
14801281 AAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
14801346 CAAGTACCAGCACCCATCGCACATCATATGCGTACACCCCCCCGATCCCCCCGATCGTCGAAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGACGGAACC
*** * * * * *
14801411 CCAATGCCGCCAAACAAGTTCTCCGGTGATGCTCCGACGATGGTACCCCGACGGAAAAAAATGCG
129 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAAAAAAAATG-G
* * * * * *
14801476 ATACCAACACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTC-ATTCCGATCTGATCTTAGGC
193 -CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGAC
* **
14801540 TGTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTG-AACCCACGAAA
256 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-GCAACCCACGAAA
* * * * *
14801604 CAAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGAGATGCGCAAGCTGGGGATCGATCGGGTCCC
320 CGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * ** * * * *
14801669 CCTCTGCGTGCTACCGATCCTACTGTCATAACCCTTAGTCTGGTCTGATCTTAGACTGGAAATGA
385 CCTCTACGTGCTACCGATCCTGCTGCCGCAACCC-TCGTCCGGTCTAATCTTAGACTGGGAATGA
*
14801734 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCGAC
449 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCGGC
14801799 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
513 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** *
14801864 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCAC
578 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
14801929 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTC
643 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC
* *
14801994 GAGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTAT
708 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
14802059 TTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACT-AGAAGTGTAGAAGATTTTGTGACCATA
773 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATT
* * ** *
14802123 TGAAAAAAATGTCCCTATTTTGGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTC
837 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
14802185 AAATGCTCTTTAAGGAGGTGTGAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
1 AAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
14802250 CCAAGTA-CAGCACCCATCGCACATCTTGTGTGCACA--------CCCTCCGATCGTC-GAACCC
65 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGACGGAACCC
* * * * * * *
14802305 CAATGCCG-C--TGA-G---T-CGG-G-TTC-TCGGCGGTGATGCTCCGACGAAGAAAAATACGA
130 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAA-AAAAA-ATGG
* ** * ** *
14802359 CACCAACACATGCCCGAGCCCAACATGTGCTATC-TAACATTC-ATTCTGGTCTGATCTTAGACT
193 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACT
* * * *
14802422 GGGAATAAAAT-CGTATGCTTAGACTGGGAATGAACTCCGTATTGCCCAAGTCAACCCACGAAAA
257 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGGCAACCCACG-AAA
* * * * * * * *
14802486 CGAGCGTGCAGGTGCTTAGCTGGCCAGTGGGGCGGGCTGTGCAAGCCGGGGGATCGGTCGGGT-C
320 CGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGATCGGGTCC
* * * ** * ** * * * *
14802550 TCTTTTGGGGTGCTGCCGATCCTGCTGGTGCAACCCTCGATCTGGT-TGATCTT-CA-TTGGAAT
384 CCCTCT-ACGTGCTACCGATCCTGCTGCCGCAACCCTCG-TCCGGTCTAATCTTAGACTGGGAAT
* * *
14802612 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGACGGGCGGGCACTATGCCG
447 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGCCG
*
14802677 GCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
511 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
14802742 ATATTTCTGCATGCCAATTCCATTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
576 ATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
14802807 CATGTGAAGTTTAATGGCAAGGCGACTCGTATTCTATTTTTCACGATTTTCAAAACTTTTTACGG
640 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG
* * *
14802872 TTCAAGATTTTTTAATA-TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
705 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
14802936 TATTTTTGTTTG-ATGCAAAAAAAAATTTAGCTAAAAACTCAAAGTGTACCAGATTTTGTGACCA
770 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
* * * *
14803000 TTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACGGGCAGTAAACATGTAAAATCTC
835 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
14803064 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGCGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
14803129 CATGTAGCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCCCGATC-ACTGGAACCC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGAC-GGAACCC
* * * *
14803186 CAATGCCACCGGTCAGGTTCTCCGGTGATGC-TCTGGCGATGGTGCCCTGGCGAAGAAAAATGCG
130 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTC-GGCGATGGTGCCCCGACGAAAAAAAATG-G
* * * * * * *
14803250 ACACCAACACATGTCCGAGTCCAGCATGTGCTACCGGAACCCTCGATCCAGTCCGATCTTGGACT
193 -CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACT
* *
14803315 AGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTG-AACCCATGAAAC
257 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-GCAACCCACGAAAC
* *
14803379 GAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCAGGTCCCC
321 GAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * *
14803444 CTCTACGTGCTATCAATCCTACTGCTGCAACCCTCTGT-CGGTCTAATCTTAGACTGGGAATGAA
386 CTCTACGTGCTACCGATCCTGCTGCCGCAACCCTC-GTCCGGTCTAATCTTAGACTGGGAATGAA
** * * * * *
14803508 CTCTATATGCCTAAGCCAACCGATGAAATGAGCGGGC---AGGCGGGCGGGCACTATGCTGGCCA
450 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCA
14803570 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
515 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
14803635 TTCTGCATGCCAATGCCATTTTTATGGCTTTTGAATTCATACAATGGTCCCTTAAGCCTTCACAT
580 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
14803700 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-A
645 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA
* * *
14803764 GGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATACTTGTATT
710 -GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
14803829 TTTGTTGGTAGGCACAAAAAATTTCACCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTG
774 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* * * * * *
14803894 AAAAAAGTGTCCCCATTTTAGACGCTTTCATGGCTACTGGTAGCAAACCTATAAAATCTA
839 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * * *
14803954 AAATGCTCCTTAAGGGGGGGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCTAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
14804019 CAAGCACCAGCAGCCACCACACATCATGTGCGCACACCGCCCCGGCCCCCTCGATCGCCGGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCC-CGATCGACGGAACC
* * * ** *
14804084 CCAATGCCGCCGGTCAGGTTTTCCGGCGATGCTTCGACGAT-GTGCCCCGGTGAAGAAAAATGCT
129 CCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAAAAAAAATG--
* * * * *
14804148 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACT
192 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACT
* *
14804213 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
257 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACG
* * * * * *
14804278 AGCGTGCGGGCGCTCAACCGGCCATAGGGGCGGGATACGCAAGCTGTGGATCGGTCGGGT-CCCC
322 AGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
* ** * *
14804342 -CT-C-TG----CG----TGCTGCCGCAACCCTTGGTTTGGTCCAATCTTAGATTGGGAATGAAC
387 TCTACGTGCTACCGATCCTGCTGCCGCAACCC-TCGTCCGGTCTAATCTTAGACTGGGAATGAAC
* * *
14804396 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGTACTACGCCGACGA
451 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGCCGGCCA
*** * *
14804461 GAGAGATTTGATGCGCAAGCTGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATAT
515 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * * *
14804526 TTCTGTGTCCCAATGCCATTTTTATGGCTTTTAAATTCATACATTGGTCCCTTAAGCCTTCACGT
580 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
14804591 GAAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGG
645 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA
* * * *
14804656 GATTTTTTAAAAATTTTTTTGGAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTTGAATT
710 GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * * *
14804721 TTTTTTGGCTTGGACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACGAGATTTTGTGACCATTTG
774 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
*
14804786 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTC
839 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14804846 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
14804911 CAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCTGGCCCCCCGATCGACGGAACCCC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGACGGAACCCC
* *
14804976 AATGCCGCCGGTTAGGTTCCCCGGTGATGCTTCGGCGATGGTGCCCCGACGAAAAAAAAGTGGCA
131 AATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAAAAAAAA-TGGCA
* * ** * *
14805041 CCAACATATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGATTTGGTATGATCTTAGACGGGG
195 CCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
* *
14805106 AATGAACTCCGTATGCTTAGACTGCGAATGAACTCTGTATGCCTAAGGCAACCCACGAAACGAGC
260 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGC
* ** * * * * * *
14805171 GTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGACCAGGTCCACCTCT
325 GTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT
* * * * * *
14805236 ACGGGCTACAGAACCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGATTGGGAATGAACTCC
390 ACGTGCTACCGATCCTGCTGCCGCAACCCTC-GTCCGGTCTAATCTTAGACTGGGAATGAACTCC
* * * * *
14805301 GTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGAGCGGGTGAGCACCACGCCGGCCAGAA
454 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GCGGGCGGGCACTACGCCGGCCAGAG
* *
14805366 AGACGGGATGCGCAAGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
518 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
14805431 TGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAA
583 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
** *
14805496 GTTTCATGGCAAGACGACTCG-TTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTCGAGAA
648 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGAT
* * *
14805560 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTA
713 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
14805625 TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGGGACCATTTGAAA
778 TTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAA
14805690 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
842 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
14805747 AAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
14805812 CAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATC-ACCGGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGA-CGGAACC
* * *
14805876 CCAATGCCGCCGGTCAGGTTCTTCGGCGATGATCCAGCGATGCTCCAGCGATGGTGCCCC-AGTG
129 CCAATGCCGCCGGTCAGGTTC-TC--CG--G-T-----GATGCTTCGGCGATGGTGCCCCGA-CG
** * * *
14805940 AAGAAAAATACAGCACCAACACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTC
182 AA-AAAAA-ATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTC
* * *
14806005 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
245 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCA
* * * * * *
14806070 ACCCACGAAACGAGCGTACGGGTGCCCAACCGACCAGAGGGGCGGGATGCGCAAGCCAGGGTTTG
310 ACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
14806135 GTCGGGTCCCCCTCTACGTGC-AGCCGATCCTGCTGCCACAACCCTCGATCCGGTCCT-ATCATA
375 ATCGGGTCCCCCTCTACGTGCTA-CCGATCCTGCTGCCGCAACCCTCG-TCCGGT-CTAATCTTA
* *
14806198 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAATCGAACGGGC--G-GGCGGGCGGGC
437 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGC
* * * *
14806260 ACTACGCCAGCAAGAGAGACGGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTTGGCTTAGG
502 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
14806324 CACATCTTCATATTTTTGTC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
567 CACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
14806388 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTATCACGATTTTTGAAAC
631 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * ** *
14806453 TTTTTAAGGTTTGAGATTTTTTAAAA-TTTTTCGGAACGAGTTTTGGGACCAAACTTGGTAAACG
696 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
14806517 TGATCCTTGCATTTTTGTTGGCAAGCACAAAACAATTCAGCTAAAAAATCAAAGTGTACAAGATT
761 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
*
14806582 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGT
826 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
14806647 AAAATCTC
891 AAAATCTC
* *
14806655 AAATGCTCTATAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
14806720 CAAGTACAAGCACCCATTGCACATCATGTGTGCACACCTCCACCCCGACTCCCCCGATCGTCGGA
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CC-CCCCGGC-CCCCCGATCGACGGA
** * * * *
14806785 ACCCCAATGCCATCAGTCAAGTTCTCTGGCGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAAT
126 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAA-AAAAA-
* * * * *
14806850 GTGGCACCACCACATGCTCGAGCCCAGCAAGTGCTGCCACAACCCTC-A--------G-TC----
189 ATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAG
* *
14806901 -C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
254 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAA
* * * *
14806954 ATGAGCGTGCGGGTGCTCAGCCGGCCAGAGTGGTGGGATGCGCAAGCCGGGGATCGA-CTGGGTC
319 ACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTC
*** * * * *
14807018 CCCCTCTACGTGCTGTTGATCCTGCTGCTGGAACCCTTGGTCCGAT-TCAATCTTAGACTGGGAA
383 CCCCTCTACGTGCTACCGATCCTGCTGCCGCAACCC-TCGTCCGGTCT-AATCTTAGACTGGGAA
* * * * * * *
14807082 TGAACTCTGTATGCCTAAGCCAACCGGCAAAATGAGTGGGC--G-GGCGGGCGGGCACTATGTCG
446 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCG
* *
14807144 ACCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAG
511 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
14807189 NNNNNNNNNN
Statistics
Matches: 4354, Mismatches: 538, Indels: 252
0.85 0.10 0.05
Matches are distributed among these distances:
873 1 0.00
874 1 0.00
875 213 0.05
876 25 0.01
877 1 0.00
878 46 0.01
879 150 0.03
880 241 0.06
881 177 0.04
882 102 0.02
883 49 0.01
884 7 0.00
885 4 0.00
886 16 0.00
887 58 0.01
888 112 0.03
889 160 0.04
890 413 0.09
891 286 0.07
892 349 0.08
893 98 0.02
894 46 0.01
895 1 0.00
896 3 0.00
897 4 0.00
898 193 0.04
899 46 0.01
900 85 0.02
901 302 0.07
902 271 0.06
903 1 0.00
904 45 0.01
905 51 0.01
907 2 0.00
908 183 0.04
909 203 0.05
910 80 0.02
911 6 0.00
912 40 0.01
913 25 0.01
914 255 0.06
915 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGACGGAACCCC
AATGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCCCGACGAAAAAAAATGGCAC
CAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCG
TGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTA
CGTGCTACCGATCCTGCTGCCGCAACCCTCGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
Found at i:14806038 original size:26 final size:26
Alignment explanation
Indices: 14806009--14806061 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14805999 CCGGTCCGAT
*
14806009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14806035 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14806061 C
1 C
14806062 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14817579 original size:15 final size:16
Alignment explanation
Indices: 14817548--14817602 Score: 69
Period size: 15 Copynumber: 3.5 Consensus size: 16
14817538 AAACCTGGAG
*
14817548 CGGCTCGGATCGCGGCT
1 CGGCTCGGCT-GCGGCT
*
14817565 CGGCTTGG-TGCGGCT
1 CGGCTCGGCTGCGGCT
14817580 CGGCTCGGCT-CGGCT
1 CGGCTCGGCTGCGGCT
14817595 CGGCTCGG
1 CGGCTCGG
14817603 AGGGGCTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 26 0.74
16 2 0.06
17 7 0.20
ACGTcount: A:0.02, C:0.35, G:0.44, T:0.20
Consensus pattern (16 bp):
CGGCTCGGCTGCGGCT
Found at i:14817583 original size:5 final size:5
Alignment explanation
Indices: 14817560--14817602 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
14817550 GCTCGGATCG
*
14817560 CGGCT CGGCT TGG-T GCGGCT CGGCT CGGCT CGGCT CGGCT CGG
1 CGGCT CGGCT CGGCT -CGGCT CGGCT CGGCT CGGCT CGGCT CGG
14817603 AGGGGCTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 1 0.03
5 32 0.94
6 1 0.03
ACGTcount: A:0.00, C:0.35, G:0.44, T:0.21
Consensus pattern (5 bp):
CGGCT
Found at i:14817609 original size:15 final size:15
Alignment explanation
Indices: 14817548--14817609 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
14817538 AAACCTGGAG
14817548 CGGCTCGGATCGCGGCT
1 CGGCTCGGA--GCGGCT
* *
14817565 CGGCTTGGTGCGGCT
1 CGGCTCGGAGCGGCT
**
14817580 CGGCTCGGCTCGGCT
1 CGGCTCGGAGCGGCT
*
14817595 CGGCTCGGAGGGGCT
1 CGGCTCGGAGCGGCT
14817610 GAAACGCGCG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
15 30 0.81
17 7 0.19
ACGTcount: A:0.03, C:0.32, G:0.45, T:0.19
Consensus pattern (15 bp):
CGGCTCGGAGCGGCT
Found at i:14817854 original size:17 final size:19
Alignment explanation
Indices: 14817820--14817854 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
14817810 ACGCCGGGTG
14817820 CCGGATTCTGGAAATTTCA
1 CCGGATTCTGGAAATTTCA
14817839 CCGGA-TCTGG-AATTTC
1 CCGGATTCTGGAAATTTC
14817855 GCCGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (19 bp):
CCGGATTCTGGAAATTTCA
Found at i:14817960 original size:31 final size:31
Alignment explanation
Indices: 14817922--14817994 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
14817912 AAACTGGGTC
*
14817922 TGTCGCCGGAAACTTC-AAAGTTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAG-TCGCCGGAAT
14817953 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
*
14817984 TTTCGCCGGAA
1 TGTCGCCGGAA
14817995 TCTGGAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (31 bp):
TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
Found at i:14818328 original size:12 final size:12
Alignment explanation
Indices: 14818311--14818344 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14818301 CTAGCCCTCC
14818311 AAAATAAAAATT
1 AAAATAAAAATT
14818323 AAAAT-AAAATT
1 AAAATAAAAATT
*
14818334 AAAAAAAAAAT
1 AAAATAAAAAT
14818345 CTAGATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAAAAATT
Found at i:14818590 original size:7 final size:7
Alignment explanation
Indices: 14818569--14818606 Score: 55
Period size: 6 Copynumber: 5.9 Consensus size: 7
14818559 CACAAGAGAG
14818569 AAAA-AA
1 AAAATAA
14818575 AAAAT-A
1 AAAATAA
14818581 AAAAT-A
1 AAAATAA
14818587 AAAATAA
1 AAAATAA
14818594 AAAATAA
1 AAAATAA
14818601 AAAATA
1 AAAATA
14818607 CGGGTAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 16 0.53
7 14 0.47
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Found at i:14818596 original size:13 final size:12
Alignment explanation
Indices: 14818569--14818603 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
14818559 CACAAGAGAG
14818569 AAAAA-AAAAAT
1 AAAAATAAAAAT
14818580 AAAAATAAAAAT
1 AAAAATAAAAAT
14818592 AAAAAATAAAAA
1 -AAAAATAAAAA
14818604 ATACGGGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 5 0.23
12 6 0.27
13 11 0.50
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:14818661 original size:20 final size:20
Alignment explanation
Indices: 14818639--14818703 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
14818629 TTGCCCATTT
* *
14818639 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
14818659 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
14818679 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
14818699 GGGCC
1 GGGCC
14818704 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:14819432 original size:26 final size:26
Alignment explanation
Indices: 14819403--14819455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14819393 GTTGACTTAG
* *
14819403 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
14819429 GCATACAAAGTTCATTTCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
14819455 G
1 G
14819456 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:14820333 original size:26 final size:26
Alignment explanation
Indices: 14820290--14820349 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
14820280 GTTGACTTAG
*
14820290 GCATACGGACTTCATTCCCTGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* *
14820316 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
14820342 G-AT-CGGAC
1 GCATACGGAC
14820350 AGGACCGAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:14820771 original size:896 final size:882
Alignment explanation
Indices: 14818726--14821194 Score: 3352
Period size: 887 Copynumber: 2.8 Consensus size: 882
14818716 GGTGTCTACA
* * *
14818726 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCTTCATCAAAACTTAAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-TCATCAAACCTCAAGAACTCACAC
* *
14818791 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCCGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGG
* *
14818856 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTG
130 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* *
14818921 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
195 CATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-
* *
14818986 TTTAAAAAATCCCGG-ACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
259 TTT-AAAAAT-CCGGAACCGT-AAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
14819050 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
321 CCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCAT
* *
14819115 TGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
386 TGGCACGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14819180 ATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCCCG-CTCGTTTTGTCGGTTGGCTTA
451 ATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCTGCCCGCCCGCCTCGTTTCGTCGGTTGGGTTA
* ** * * *
14819243 GGCATACGGAGTTCATTTCCAGTCTAAGATCAGACTGGACCGATGGTTGTAGCGGCAGGATCGGC
515 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
14819308 AGCATGCAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCGCCTCTCTGGCTGGCTGAGTG
580 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-GGCTGAGCG
* * *
14819373 CCCGTA-AGCTCGTTCTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAA
644 CCCGTACA-CTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATACAA
* *
14819437 AGTTCATTTCCAATCTAAGATCAAACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCAGGCA
708 AGTTCATTTCCAATCTAAGATCAAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCAGGCA
* * *
14819502 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTAACCGGTGGCATTGG
773 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGGAGAACCTAACCGGCGGCATTGG
* * *
14819567 GGTTCTGACGATCGGGGGGCTGGGGGGTGTGCGCAAATGATGTGCG
838 GGTTCCGACGATCGGGGAGC-GGGGGGTGTGCACAAATGATGTGCG
** * *
14819613 ATGGGTGCTGGTACTTGGATCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACAT
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCACAC
* * *
14819678 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAATAGCCACTAAAGTGTCTGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGG
* * *
14819743 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTGTTTTTT
130 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTAT
* * * * *
14819808 GCATGCCAAGAAAAATAGAAGGATTACGTCCACCAAGTATGGGGCCAAAA-TGCCTTCCAAAAAA
194 GCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAA
*
14819872 ATTT-AAAAT-CGGAACCGTAAAAGTTTTCAAAATCATGGAAAA-A-AAAACGAGTCGTTCTTGC
258 ATTTAAAAATCCGGAACCGTAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCG-TCTTGC
14819933 CATGAAACGTCCACCGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
322 CATGAAACGT-CA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
* * *
14819998 TTGGCACGCAGAAATATGAAGATGTACCTAAACGCACCTATCACCCTATCGATCCACGGCTTGCG
385 TTGGCACGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
14820063 CAACCTGTCTCTTTGGCCGACGTAGTGCCCACCTGCCCGCCCGCCCCCTCATTTCGTCGGTTGGG
450 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCG---CCTCGTTTCGTCGGTTGGG
* *
14820128 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGTGGTAGCAAGATC
512 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
*
14820192 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
577 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTGA
* *
14820257 GCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACGGACTTCATTCCCTGTCTAAGCATAC
641 GCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATAC
** * ** *
14820322 GGAGTTC-TTTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTACGGCAGCACATGCTGGGCTCC
706 AAAGTTCATTT-CCAATCTAAGATCAAACCA-GACCGAGGGTTACAGCAGCACATGCTGGGCT-C
* *
14820385 A-GCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCACCGGAGAACC
768 AGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT--------CAT---CGGAGAACC
*
14820449 TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGAGC-GGGGG-GTGCACAAATGATGTGCG
822 TAACCGGCGGCATTGGGGTTCCGACGATCG-GGGAGCGGGGGGTGTGCACAAATGATGTGCG
* * * *
14820509 ATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATGAAACCTCGAGAACTCGCAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTCAAGAACTCACAC
*
14820574 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
65 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGG
* * *
14820639 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTATG
130 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* *
14820704 CATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCTTTCCCGAGAAAA
195 CATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAAA
* *
14820769 TTTAAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
259 TTT--AAAAATCCGGAACCG-TAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTT
14820833 GCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
320 GCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
* * *
14820898 TTGGCACGTAGAAATATGAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCT
385 TTGGCACGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
14820963 TATCCCGTCTCTCTGGCTGGCATAGTGCCTGCCCGCCCGCCCGCATTCTCGTTTCGTCGGTTGGG
450 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGC---CTCGTTTCGTCGGTTGGG
* * * * * * * *
14821028 TTCGGCATACGGAATTCATTCCCAGTCTAAGATCGGGCCAGATCGAGGGTTGCGACAGTAGGATC
512 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC
** * * * * *
14821093 GGCAGCACATAGAGGGGGACTC-AGCCGATCCCTGGCTTGCACATTCCGCCCCTCTGGCCGACTG
577 GGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CGGCTG
* * * *
14821157 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
640 AGCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCAT
14821195 TGGGGTTCCT
Statistics
Matches: 1397, Mismatches: 140, Indels: 76
0.87 0.09 0.05
Matches are distributed among these distances:
881 11 0.01
882 16 0.01
883 26 0.02
884 152 0.11
885 6 0.00
886 5 0.00
887 395 0.28
888 116 0.08
895 58 0.04
896 197 0.14
897 6 0.00
898 36 0.03
899 10 0.01
900 205 0.15
901 130 0.09
902 17 0.01
903 11 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCCGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TAAAAATCCGGAACCGTAAAAGTTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCTCGTTTCGTCGGTTGGGTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCCGTAC
ACTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATACAAAGTTCATT
TCCAATCTAAGATCAAACCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCAGGCATGTGCTGG
TGCCACATTTTTCTTCGCCGGGGCACCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGA
CGATCGGGGAGCGGGGGGTGTGCACAAATGATGTGCG
Found at i:14822832 original size:26 final size:26
Alignment explanation
Indices: 14822795--14822847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14822785 GTTGACTTAG
* *
14822795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14822821 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14822847 G
1 G
14822848 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:14823667 original size:903 final size:902
Alignment explanation
Indices: 14821919--14828953 Score: 9574
Period size: 903 Copynumber: 7.8 Consensus size: 902
14821909 GTTGACTGAG
* * *
14821919 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
14821984 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCGGAGA
* * * *
14822049 ACCTGACCAGCGGTATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGCGCTCATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
14822113 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
14822178 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAGTG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
14822243 AGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
14822308 GCATGTCAACAAAAATACAAGGATCACATCTACTATGTTTGGGGCCAAAACTCCTTTCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
14822373 TTTTAAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGCCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
14822438 CCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
14822503 TGGCACGTAGAAATATGAAGATGTGCCTAAAACCACATACCACCGTATCGATCCACGACTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
14822568 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CGGCCCGCTCGTTTCATCGGTTGGC
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-GCCCGCTCGTTTCGTCGGTTGGC
* * * *
14822632 TTAGGCATATGGAGTTCATTCCCAGTCTATGATCAA-ACCAGA-TCGAGGGTTGCAGCAGCAGGA
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AAGACCAGACT-GAGGGTT-CCGCAGTAGGA
* ** * * * * * * *
14822695 TTGGCAGCACGTATAGGTGGACCCGATCGATCCTCGGCTTGTGCATCCAGCCCCTCTGGCCGACT
777 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
14822760 GAGCGTCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14822821 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
14822886 CTTGAGCATGTGCTAGTGCTGCATTTTTCTTCG-CTGGGGCACCATCCTCGGAGCAACGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCTCGGAGCATCGCCGGAG
* ** * *
14822950 AACCTGACCGGCGGCATTAGGGTTCC-AGCGATCGGGGGGGTTGGGGGGTGTGCACACATGATCT
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
14823014 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14823079 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *** * *
14823144 TGGGGACATTTTTTTCAAATGGTGTGAAAATCTTGTACACTTCGAATTTTGAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
14823209 GTGCCTGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
14823274 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
14823339 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14823404 ATTGCCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
14823469 ACATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCATTTTGTCGATCGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
* *
14823534 CTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATAAGACCAGACTAAGGGTTACCGCAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTT-CCGCAGTAGGAT
* * ** * *
14823599 CGACAACTTACAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
778 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
14823664 AGCG-CTCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAA
843 AGCGTC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14823724 GCATACGAAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
14823789 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC-CGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCGCCGGAG
* * * *
14823853 AACCTGACCGGCAGCATTGAGGTTCTGACGTTCGGGGGGGCC-GGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14823917 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14823982 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTCAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
14824047 GGGGACAGTTTTTTCAAATCGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAAGTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
14824112 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
14824177 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
14824242 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14824307 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
14824372 CAACCTGTCTCTTTGGCCGACGTAGTGCCCACCTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGG
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGC
** * ** *
14824437 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA-AATGGAGCATTCCGGTAGTAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACT-GAGGGTTCC-GCAGTAGGAT
* * * * ** * * *
14824501 CGGTAGCACGCAGAGGGGGTCTCGGTCGATCTCGGGCTTGCGCATCCCGCCCCTCTGGCCAGCTG
778 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
14824566 AGCGTCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAA
843 AGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAA
* * * **
14824626 GCATAC-AGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGATAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
14824690 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTAGGGGCACCATCAC-CGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCGCCGGA
* * *
14824754 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGCGCGCAAATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * **
14824818 TGCGAAGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTCCCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
14824883 ACACCCCCTTAAAAAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
14824948 ATGGGGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * **
14825013 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCAAAAAATCCTTAGGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
14825078 ATATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
14825143 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
14825208 CATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
14825273 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG--C-C-CACCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTG
* * * ** * *
14825334 GGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AATGGAGCATTCTGGTAGTAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACT-GAGGGTTC-CGCAGTAGG
* * * * * * * **
14825398 ACCAGCAGCA-AGCGGAGGGGGTCTCGGCCGATCCCGGGCTTGCGCATCCCGCCCCTCTGGCTAG
776 ATCGGCAGCACA-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
14825462 CTGAGCGTCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
840 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14825525 GCATAC-AGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
*
14825589 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC-CGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCGCCGGA
* * ** * *
14825653 GAACCTGATCGACGTAATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTACGCACATGATTT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
14825717 ACGATGGGTGCTGGTACATGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14825782 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14825847 TGGGGACACTATTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
14825912 GTGCAAGCCAA-AAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCGGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
14825976 AATTTTCAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
14826041 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
14826106 ATTTGCACGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTTGT
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
14826171 GCATCCCGTCTCTTTGGCCGGCGTAGT---TG-CCACCCG-T-------TCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
14826224 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGT
714 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATAAGACCAGACTGAGGGTTCCG-CAGTAGGA
* * * * * **
14826288 TCGGCAGCACGCAGA-AGGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGTTGGCT
777 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
14826352 GAGTGCCCGCACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAATCTAA
842 GAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
14826413 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGATGCTAG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
14826477 GCTCGGGCATGTGCTGGTGCCGCATATTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGAAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCGGAG
* * ** *
14826542 AACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGCAGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
14826607 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCGCTATTCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14826672 CACCCCTTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14826737 TGGGGACACTTTTTTCAAATGGTAAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
14826801 GTGCATGCCAAAAAAAATACAAGGATCACTTCAACCAAGTTTTGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
14826866 AATTTTAAAAAATCTTGAACCACAGAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
14826931 TGCTATGAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14826996 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCATGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14827061 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCTCGCCCGTTCG--C-C-CGTTTCGTCGGTTGT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
14827122 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGGCCAGACTTATGGTTACTGCAGCT-GGA
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTT-CCGCAG-TAGGA
* * * * *
14827186 TCGACAGCACACAGAGGGGGACTCGAATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
777 TCGGCAGCACACAGAGGGGGACCCG-ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * *
14827251 TGAGCACCCGCACGGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14827313 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
14827378 CTCGGGCATGTGTTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCGGAGA
* * * * * *
14827443 ACCTAACCGGAGGTATT-GGGTTCC-AGCGAT-AGGGGGGCCGAAGGGGGCTCTGCCCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCG--GGGGG-TGTGCGCACATGAT
* * * *
14827505 GTGCAAAGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACGTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
14827569 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCGTTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * **
14827634 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATAGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
14827699 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
14827764 AAAATTTAAAAAAATCCTAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
14827829 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
14827894 ACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
14827959 GCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-T-------TCGTTTCGTCGATT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTT
** * * * * * *
14828016 GGCTTAGGCATACATAGTTTATTCCCAGACTAAGAT-CGATCC-GAACTGAGGGTTGCGGTAGCA
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGA-CCAG-ACTGAGGGTT-CCGCAGTA
* * * *
14828079 GGATCGGCAGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCA
774 GGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
14828143 GCTGA--GTACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGACTA
839 GCTGAGCGT-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
14828206 A
902 A
* * *
14828207 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGTGGCAGCACATACTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
14828271 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCGGAG
* *
14828336 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGATG
* * *
14828401 TGCGATTGGTGCTGGTACTTGGCCCTTATAGTGGCCCGCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
14828466 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
14828531 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
14828595 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACT-CTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
14828659 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
14828724 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
14828789 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * ** * *
14828854 CGTATCCCATCTCTTTGGCCGGCATTGTGCCCTCTCGCCCGCCCTCCCATTCATTTTGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTG
*** * *
14828919 GCTTACAAATACGGAGTTTATTTCCAGTCTAAGAT
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
14828954 CAAACTAAAC
Statistics
Matches: 5468, Mismatches: 592, Indels: 146
0.88 0.10 0.02
Matches are distributed among these distances:
888 237 0.04
889 125 0.02
890 416 0.08
893 7 0.00
894 451 0.08
895 124 0.02
896 229 0.04
897 254 0.05
898 286 0.05
899 490 0.09
900 569 0.10
901 17 0.00
902 980 0.18
903 1278 0.23
904 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACTGAGGGTTCCGCAGTAGGATCGG
CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14824636 original size:26 final size:26
Alignment explanation
Indices: 14824600--14824652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14824590 GTTGACTTAG
*
14824600 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
14824626 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14824652 G
1 G
14824653 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14825549 original size:26 final size:26
Alignment explanation
Indices: 14825499--14825551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14825489 GTTGACTTAG
**
14825499 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14825525 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14825551 G
1 G
14825552 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14826423 original size:26 final size:26
Alignment explanation
Indices: 14826387--14826439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14826377 GTTGTCTTAG
*
14826387 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14826413 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14826439 G
1 G
14826440 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14827317 original size:26 final size:26
Alignment explanation
Indices: 14827287--14827339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827277 GTTGACTTAG
*
14827287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14827313 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14827339 G
1 G
14827340 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14828211 original size:26 final size:26
Alignment explanation
Indices: 14828181--14828233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14828171 GTTGACTTAG
14828181 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
* *
14828207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
14828233 G
1 G
14828234 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:14830815 original size:26 final size:26
Alignment explanation
Indices: 14830781--14830831 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14830771 ACTTAGGCAT
* *
14830781 ATACGAAGTTCATTCCTAGTCTAAGC
1 ATACAAAGTTCATTCCCAGTCTAAGC
14830807 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCCCAGTCTAAG
14830832 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGC
Found at i:14832140 original size:902 final size:897
Alignment explanation
Indices: 14829038--14837794 Score: 10294
Period size: 877 Copynumber: 9.8 Consensus size: 897
14829028 GTTGACTTAG
* * * * * *
14829038 GCATACGGAGTTTATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
14829103 CTCAGGCATGTGTTGGTGCTATATTTTTCTTCGTCGGGGCACCATCG-CGG-G-A-------A-A
66 CTCAGGCATGTGTTGGTGC-CTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* **
14829157 ACCTGATCGGTGGCATTGGGGTTCC-AGCGAT--------C-GGGGG-GTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGT
* * * *
14829211 GTGATGGGTGCTGGAACTTGGCCATTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14829276 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTTGCTGCCAGTAGCCATTCAAGTGTATGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14829341 ATGGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAAGTTTT
323 AT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
14829406 TTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAA
*
14829469 AAAATTTTTAAAAATCCCGAAACCGTAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAATTTTAAAAAATCCCG-AACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
14829534 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGGAA-TTACATGCCATAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTAT-GAATTTACAAGCCATAAA
** * * *
14829598 AATAGGCATT-GCATGCAGAAATATGAATATGTACCTAAAACCCACCTATCACCCTATCGATCCA
577 AAT-GGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCA
* * * *
14829662 CAGCCTGCGCAACCCGTCCTCTCTGGCCGACGTAGTGCCCACTGCCCGCCAC-CCCGCTCGTTTC
640 CGGCTTGCGCATCCCGT-CTCTCTGGCCGGCGTAGTGCCC-C--CCCGCC-CGCCCGCTCGTTTC
* ** *
14829726 GTCGGTTGGCTTAGGCATACCGAGTTCATTTTCAGTCTAAGATCAGACTAA-A-TCGAGGGTT--
700 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC-AAGACT-GAGGGTTGC
* * * *
14829787 ---------A-CGACAGCATGCAGAGGGTGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
763 AGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
*
14829842 CTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
828 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCA
14829907 GTCTAAA
892 GTCT-AA
** * * * * *
14829914 GCATAATGACTTCATTCCCAGTCTAAGATCGGACCAGACC-AAGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
14829978 GTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
14830043 ACCTGACCGATGGCATTGGGGTTCCGGCGATTGGGGGGCCGAGGGG-GTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTG
14830107 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
14830172 ACCCCCTTAAAGAGCATTTGAGATTATACTGGTTTGCTACCAATAGCCATTAAAGTGTGTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
14830237 GGGGACACTTTTTTGAAATGGTCGCAAAATATTGTCCACTTTGGGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
14830302 TGGATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGAAAGA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAA
* * * ** * *
14830367 ATTTTTAAAAATTCCGAACCGTAAAAAGGTTCAAAAATTTTGAAAAATAGAAAATGAATCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
14830432 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
14830497 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
14830562 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGC-CTGTTGGTACGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGCCCGCCCGCTC-GTT--T-CGTCGGTTGGC
* * * *
14830626 TTAGGCATACGGAGTTCATTCCCAATGTAAGATCGGACCAA-ACTGAGGGTT--A-CAGCA-G--
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AAACAAGACTGAGGGTTGCAGCAGCAGGAT
* * * * *
14830684 C-TC-GCA---A-AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCACTCTAGCCGGTTG
774 CGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
14830743 AGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATACGAAGTTCATTCCTAGTCTAA
839 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC--ATACG-AGTTCATTCCCAGTCTAA
** * * *
14830805 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * * * *
14830870 CTCAAGCATGTGTTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGTATCGTCGAAAA
66 CTCAGGCATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
14830935 ACATGATCGGCGGCATTGGGGTTCCGACGAT--------C-GGGGG-GTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTG
* * *
14830990 TGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14831055 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14831120 GGGGACACTTTTCTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
14831185 TGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAAT-CTTCTAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA
* * *
14831249 TTTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
455 -TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
14831314 CCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
14831379 TTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
14831444 CATCCCGTTTCTCTGGCCGGGGTAGCGCCCACCCCGCCCACCCACTCGTTTCATCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
14831509 GGCATACGGAGTCCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCAGCAGCAAGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCAGCAGCAGGATCGAC
* ** * *
14831574 AGCACATAGAGGGGGACCCGATTGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGACTGAGCA
778 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * * **
14831639 CCCGCACGCTCATTTCATGAGTTGACTTAGGCATATGGGCTTCATTCCTTGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAG-TTCATTCCCAGTCTAA
* *
14831695 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** **
14831760 CTTTGGCATGTGTTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCAGGCATGTGTTGGTGCCT-ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
14831825 ACCTGACCGACGACGTTGGGGTTCCGATGATCGGGGGTGCCGGGCGGGTGTGTGCACACATGTTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGG-GGGTGTGTGCGCACATGATG
* * ** *
14831890 TGCAATGGGTGCTGGTTCTTGGCCCTTATATTAACCCCCTATCCATCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
**
14831955 ACATACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
14832020 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACGCTTCGATTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
14832085 TGTGCATGCCAACAAAGATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCTAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* * * * * * * *
14832150 ACATTTTAAAAAATCTCAAACCGCAATAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
14832215 TCGCCATGAAACTTCACATGAAGGCTT-AGGTGACCGTTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
14832279 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
14832344 GTGCATCCCGTCTCTCTAGCCGGCGTAGTG----CCCGCCCGCCCGCTCGTTTTGTCAGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * * *
14832405 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGA-GGTTACGGCAGCAGCATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCAGCAGCAGGATCG
* * * * * * * *
14832469 ATAGCATGTAGAGGGGGACCCGACTGATCCCTGACTTACGCATCTCGCCCCTCTGGCCGGTTGAG
776 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * *
14832534 TGCCCTCACGCTCGTTTCGTGGGCTGACTT-GGCATACGAAGTTTATTCCCAGTCTAA
841 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * * *
14832591 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** *
14832656 CTC-GGACATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCAGG-CATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
14832720 AACCTGACCGACGGCATTGGGATTCCAACGATCGGGGGGGCC-GGGGGTGTGTGCGCACAAGATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCGCACATGATG
* * **
14832784 TGCGATGGATGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGGCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
14832849 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
14832914 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
**
14832978 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* *
14833043 AAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
14833108 ATGCCATGAAACTTCACGTGAAGGCTTAGGGGACCGTTGTATGAATTTACGAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
14833173 CATTGGCATGCACAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
14833238 TGCATCCTGTCCCTCTAGCCGGCATAGTGCCCGCCCGTCCGCCTGACCGCTTGTTTCGGT-GGTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCC--CCGCCCGCCCGCTCGTTTC-GTCGGTT
* * * * *
14833302 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGAGGGTTG-TGACAGCA
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AACAAGACTGAGGGTTGCAG-CAGCA
* * * * * *
14833365 GGATCGATAGCATGCAGCGGGGGACCCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCC-
770 GGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
14833429 GCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCCAA
835 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAA
* * * *
14833493 GCATACGGAGTTCATTCCTAGTCTAAGATTCG-ATCGGACCGAGGGTTACGACAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
14833557 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATCACTGGAGCATCGCCGGAG
65 GCTCAGGCATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * **
14833622 AACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGGG-GTGTGCGCACATGATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGTGCGCACATGATG
*
14833686 TGCGA----TG--GGTAC-TGG---------TGGCCCCCTATCCCTCATCAAGCCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
14833735 ACACCCCCTTCAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
14833800 ATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
14833865 TGGGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGGTTGGGGCCAAAACTCATTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAA
* * * *
14833930 AAATTTTAAAAAACCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
14833995 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
14834060 CATTGGCATGCAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATTCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
14834125 CGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCCTGCTCATTTTGCCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
14834190 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAA-A-TCAAGGGTTCCGGTAGCAGGATC
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AAACAAGACT-GAGGGTTGCAGCAGCAGGATC
* * * * *
14834253 GACAACACGTAGAGGGGGACCC-AGCCGATCCTCGGCTTGCGCATCCCGCCACTCTGGCCGGTTT
775 GACAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
14834317 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * **
14834373 -C-TA---AG---------A-TC--AG---G--CCGGACTGAGGGTTACGGCAGCACTTGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
14834416 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCAGGCATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * *
14834481 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTTGGGGTGGAGGAGTGCACACATGAT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GG-TGTGTGCGCACATGAT
*
14834546 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
14834611 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
14834676 AATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
14834741 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGGTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAA
* *
14834806 AAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATCAT-AGAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA-AAAATAGAAAACGAGTCG
* *
14834870 TCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACATGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
14834935 GGCATTGGCATGCAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATTCACGGCT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
14835000 TGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCCCGCTCATTTTGCCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
14835065 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAATC-AGACCT-AGGGTTCCAGCAGCAGGA
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAACAAGA-CTGAGGGTTGCAGCAGCAGGA
* * * *
14835128 TCAACAGCACGTAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCACCACTCTGGCCGGC
773 TCGACAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
14835192 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA--CT--
837 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* ** *
14835250 -C-TA---AG---------A-TC----A--G-ACCGGACTGAGGGTTGTGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
14835293 CTC-GAGCATGTGGTGGTGCCACATTTTTCTTCG-CGGGGCACCATCGCCGAAGCATCGCCAGAG
66 CTCAG-GCATGTGTTGGTGCC-TATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * *
14835356 AA-CTGACTGATGGCGTTGGGGTTCCGACGATCGGGGGAGTCGGGGGTGGAGGTGTGCACACATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-G-CCGGGG-GG-TGTGTGCGCACATG
*
14835420 ATGTGCAATGGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
190 ATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
14835485 ACTCACACCCCTTTATAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGTT
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
14835548 TAAAATGGGGACAC-TTTTTCAAATGGTCACAAAATTCTTGTACACTTTTGAGTTTTTAGCTGAA
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-TCTTGTACAC-TTCGAGTTTTTAGCTGAA
* * * * * ** *
14835612 TTGTTTTGTGCTTGCTAACAAAAATGCAAGGATCACGTTTACCAAGTTTGGTCCCAAAACTCGTT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CT
* * * *
14835677 TCGAAAAAATTTTAAAAAATCTCAAACCTTAAAAAGTTTCAAAAATCGTGATAAATAGAAAACGA
446 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
14835742 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
14835807 AAATGGCATTGGCAGACAAAAATATGAAGATGTGCCTAAGCCAACCTACCACCCTATCGATCCAC
576 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * *
14835872 GG-TTGCGCATCCCGTCTCTCTTGCTTGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGATTCGT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCC-CCCGCCCGCCCGCTCGTTTCGT
* * * **
14835936 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGAT-AGGACCAGA-TCGAGGGTTGTGG
702 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AACAAGACT-GAGGGTTGCAG
* * * * * *
14835999 CAGCAGGATCGGCTGCACGTAGAGGGGGACCCGACCAAACCCTGGCTTGCGCATCCCGTCCCTCT
765 CAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * ** *
14836064 GGTCGGTTGGGCACCCTTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
830 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGT
14836129 CTAA
894 CTAA
* * * *
14836133 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
14836198 CTCAGGCATGTGTTGGTGCTGTATTTTTCTTCACTGGGGCACCATCGCTGGAGCATCGCGGATCA
66 CTCAGGCATGTGTTGGTGC-CTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCAT--C-G--C-
* **
14836263 TCGCCGAAGAACCTGACCGGCGGCATT-GGGTTCCGGTGATCGAGGGGGCCGGGGGGTGTGT--G
124 -CG--G-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGTGCG
14836325 CACATGATGTGCGATGGGTGCTGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACC
184 CACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
14836389 TCGAGACCTCACA-CCCCTTTAAGAGCATTTTGAGAATTTTACAGGTTTGGCTGCCAGTAGCCAT
248 TCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAG-ATTTTACAGGTTT-GCTGCCAGTAGCCA-
14836453 TTAAAGTGTCTGAAA-GGGGACCACTTTTTTTCAAATGGTC-CAAAATCTTGTACACTT-GAGTT
309 TTAAAGTGTCTGAAATGGGGA-CAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
14836515 TTTAGCTGAATTGTTTTGATGCCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
372 TTTAGCTGAATTTTTTTG-TG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * ** *
14836580 CTAAAACCTCCTTCCAAAAAAATTTTAAAAATTCCTCGAACCGTAAAAAGTTTTTGAAAATTGCT
435 CCAAAA-CTCCTT-CGAAAAAATTTTAAAAAATCC-CGAACCGTAAAAAG-TTTCAAAAATCG-T
* *
14836645 GAAAAATAGAAAACGAGTCGTGTTGCCATGAAAC-TCACGTG-AGGCTAAAGGGACCATTG-ATG
495 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * ** *
14836707 AA-TTACAAAGCCACAAAAAAATGGAATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
560 AATTTAC-AAG-C-CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* *
14836771 TACCACCCTATCGATCTACGGCTTGCGCATCCC--CTCTCTGGCCGGCGTGGTGCTCACCCGCTC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C-CCC-C-C
* *
14836834 GCCCAG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
683 GCCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
** * * * * * ** *
14836898 CTGGACTGAGGGTTGCAGTAGCAGGTTCTG-CAGCACGCAGAGGTGGACCTGGTCGATCCCTGGC
747 CAAGACTGAGGGTTGCAGCAGCAGGATC-GACAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
14836962 TTGTGCATCCCGTCCCTTTGGCCGTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
811 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
14837027 TACAGAGTTCATTCCCAGTCTAA
876 TAC-GAGTTCATTCCCAGTCTAA
* ** ** * *
14837050 GCATACGGAGTTCATTCCCAATCTAAGATC-AGACCAAATAGATGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * *
14837114 GCTCGGGCATATGTTGGTGCC-ACTTTTTTTTCGTCGGGGCACCATCGCCGGAGCATCACCGGGG
65 GCTCAGGCATGTGTTGGTGCCTA-TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
14837178 AACCTAACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGCC-AGGGGT-TGTGCGCGCATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGT
* * *
14837241 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14837306 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
14837371 TGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
14837436 GTCCAAGCCAAAAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* *** * * *
14837501 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGGAAATCTTGAAAAATAGAAAAGGAGTCGTTT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
14837566 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
14837631 ATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACAGCTTGT
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*** * * *
14837696 GCATCAAATCTCTCTCGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
14837761 CTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
14837795 TGGACCAAAC
Statistics
Matches: 6893, Mismatches: 743, Indels: 465
0.85 0.09 0.06
Matches are distributed among these distances:
858 112 0.02
859 10 0.00
861 18 0.00
863 2 0.00
865 4 0.00
866 1 0.00
867 5 0.00
868 3 0.00
874 24 0.00
875 153 0.02
876 371 0.05
877 782 0.11
878 9 0.00
879 181 0.03
880 52 0.01
881 8 0.00
882 215 0.03
883 388 0.06
884 58 0.01
885 6 0.00
886 187 0.03
887 280 0.04
888 5 0.00
889 3 0.00
890 309 0.04
891 92 0.01
892 248 0.04
893 388 0.06
894 265 0.04
895 153 0.02
896 165 0.02
897 98 0.01
898 102 0.01
899 90 0.01
900 34 0.00
901 213 0.03
902 558 0.08
903 243 0.04
904 51 0.01
905 108 0.02
906 87 0.01
907 27 0.00
908 1 0.00
909 14 0.00
910 26 0.00
911 57 0.01
912 11 0.00
913 38 0.01
914 15 0.00
915 83 0.01
916 83 0.01
917 329 0.05
918 85 0.01
919 43 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCAGGCATGTGTTGGTGCCTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAAACAAGACTGAGGGTTGCAGCAGCAGGATCGACAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:14832594 original size:26 final size:26
Alignment explanation
Indices: 14832565--14832615 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14832555 GGCTGACTTG
*
14832565 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
14832591 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
14832616 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14836136 original size:26 final size:26
Alignment explanation
Indices: 14836107--14836159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14836097 GTTGACTTAG
*
14836107 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14836133 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14836159 G
1 G
14836160 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14837060 original size:26 final size:26
Alignment explanation
Indices: 14837024--14837076 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14837014 GTTGACTTAG
*
14837024 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14837050 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14837076 G
1 G
14837077 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14838390 original size:26 final size:26
Alignment explanation
Indices: 14838348--14838400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14838338 GTTGACTTGG
14838348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14838374 GCATACGGATTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14838400 G
1 G
14838401 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14839278 original size:26 final size:26
Alignment explanation
Indices: 14839241--14839293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14839231 GTTCACTTAG
* *
14839241 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCACAGCCTAA
*
14839267 GCATACAGAGTTCATTCACAGCCTAA
1 GCATACAAAGTTCATTCACAGCCTAA
14839293 G
1 G
14839294 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCACAGCCTAA
Found at i:14839838 original size:26 final size:26
Alignment explanation
Indices: 14839788--14839838 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14839778 TAGTCTGATA
* *
14839788 TTAGACTGGGAATGAACTCTATATGT
1 TTAGACTGGGAAAGAACTCCATATGT
*
14839814 TTAGACTGGGAAAGAACTCCGTATG
1 TTAGACTGGGAAAGAACTCCATATG
14839839 CATAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCATATGT
Found at i:14842136 original size:26 final size:26
Alignment explanation
Indices: 14842100--14842152 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842090 CTGGTCTGAT
14842100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14842126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14842152 C
1 C
14842153 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14843032 original size:26 final size:25
Alignment explanation
Indices: 14843003--14843054 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14842993 CCGGTCCGAT
* *
14843003 CTTAGACTACGAATTAACTCCGTATG
1 CTTAAACT-CGAATGAACTCCGTATG
* *
14843029 CTTAAACTGGAATGAACTCTGTATG
1 CTTAAACTCGAATGAACTCCGTATG
14843054 C
1 C
14843055 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
CTTAAACTCGAATGAACTCCGTATG
Found at i:14843406 original size:902 final size:894
Alignment explanation
Indices: 14841612--14846963 Score: 5303
Period size: 902 Copynumber: 6.0 Consensus size: 894
14841602 TACGTCTGCC
* ** *
14841612 AGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-T
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
*
14841676 TTTTCTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
66 TTTTC-GGAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
14841741 CAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTTTCCCC
129 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14841806 ATTTCAGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
194 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * **
14841871 GTGAGTTCTCGAGGTTTGATGAGGCATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
259 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCG
* *
14841936 CACATCATGTGCGCACACCCCCCGGCCCCCCGGCCCCCCTGATCACCGGAACCCTAATGCCGCCG
324 CACATCATGTGCGCACA----CC-GCCCCCCGGCCCCCCTGATCACCGGAACCCAAATGCCACCG
* * * ** * *
14842001 GTCAGGTTCTCCGGTGATGGTGCCCTGGTGAAGAAAAATGTGGCACCAACACATGTCCGAGCCCA
384 ATCAAGTTCTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * ** *
14842066 GCATGTGCTGCCGTAACTCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
449 GCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAA
* * * * * *
14842131 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGTGGGTGCTCAGCCGGCC
514 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCC
* * *
14842196 AGAGGGACGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTA
579 AGAGGGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTCGATCTTGCTA
* ** * * * *
14842261 TCGTAACCCTCAATTCGGACAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGAC
644 CCACAACCCTCAATCCGGACAGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGAC
* * * * * *
14842326 GAAATGAGCGGGAGAGCGGGCGGGCGGCCACTACGCCGGCCAGAGAGACGGGTTGCACAAGTCGT
709 GAAACGAGCGGGAGAGCGGACGGGCGGCAACTACGCCGGCCAGAGAGAAGGGATGCACAAGCCGT
* *
14842391 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
774 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATCCCATTTTT
*
14842456 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
839 ACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
14842512 AGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCAGGA-TTTTTAAAATT
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * *
14842576 TTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGTATGAAA
66 TTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14842641 AAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCA
130 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
14842706 TTTCAAACATTTTAATGGCTACTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAAGGGGGTG
195 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
14842771 TGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGC
260 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGC
** * *
14842836 ACATCATGTGCGCACA-C-CCCCCCGG-CCCCCTCGATCGTCGGAATCCAAATGCCATCGATCAA
325 ACATCATGTGCGCACACCGCCCCCCGGCCCCCCT-GATCACCGGAACCCAAATGCCACCGATCAA
*
14842898 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCG
389 GTTCT-C--CG--G-T-----GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCG
* *
14842963 AGCCCAGCATGTGTTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATTAACTCCGTAT
443 AGCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTAT
* *
14843028 GCTTAAACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAA
508 GCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCGCTCAA
* * *
14843092 CCGGCCAGAGGGGCGGGATGCGCAAGTTGAGGATCGATCGGGTCCCCCTCTGCATACTGTCGATC
573 CCGGCCAGAGGGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTCGATC
* *** * * * *
14843157 TTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGAAC-CGAAATGAACTCCATATGCCTATGCC
638 TTGCTACCACAACCCTCAATCCGGACAGATCTTAG-ACTAGAAATGAACTCCATATGCCTAAGCC
* * * * *
14843221 AACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGAATTACGCCGGCCAGAGAGAAGGGATGCGC
702 AACCGACGAAACGAGCGGGAGAGCGGACGGGCGGCAACTACGCCGGCCAGAGAGAAGGGATGCAC
**
14843286 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGTGTGCCAATCC
767 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATCC
*
14843351 CATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCA
832 CATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
14843414 AGACGACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
** * * * *
14843479 TTTTCCAAAGGAGTTTAGCCCCAATCTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCACA
66 TTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
14843544 AAAAAATTCAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAT
131 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
14843609 TTTAGACACTTTAATGGCTA-TCGACAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGATG
196 TTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* **
14843673 TGAGTTCTC-ATGGTTTGATAAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
260 TGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCG
** * ** ** * ** * * * * **
14843736 --C--C--G-GAACCCTAATG-CCGTCGG---TCAGGTTCTCTGG--CGC---TG-CTTCGA-CG
324 CACATCATGTGCGCAC-ACCGCCCCCCGGCCCCCCTGATCACCGGAACCCAAATGCCACCGATC-
***** * * * * * ** * *
14843783 AAG---AAAAATG-T-G-GCACCAGCACATG---CA--CGAGC-CCAGCATGTGCTATCGTAACC
387 AAGTTCTCCGGTGATGGTGCCCCGGCA-AAGAAAAATGCG-GCACCAACACATGC--CCG-AGCC
** * * * * * * * *
14843836 TGGTC-TG-G-T-CCG--ATCTTAGA--CGG--GGA-ATGA-ACTCCGTATG--CT---TA-GAC
447 CAG-CATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTATG-C
* * * * * *
14843883 -TAGGAA-T--GAACT--CC---GTAT--CTAA-TCAA-CCACAAAACGAGCGTTCGGGCACTCA
510 TTA--AACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCGCTCA
* * * ** * * * * *
14843935 ACCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCAGGTCCCCCGCTGCGTGCTGCCGAT
572 ACCGGCCAGAGGGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTCGAT
* * * ** ** ** * * *
14844000 CCTGCTGCCGCAAAGCTCGGTCCGCTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCC
637 CTTGCTACCACAACCCTCAATCCGGACAGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCC
* * * * * * * *
14844065 AACTGACGAAACGAGCGGGCGGGCGGGCAGGCAGGC-ACTACGTC-GCCAGAGAGACGGGATGCG
702 AACCGACGAAACGAGCGGGAGAGCGGACGGGC-GGCAACTACGCCGGCCAGAGAGAAGGGATGCA
* * * * * * * *
14844128 GAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACTTCATCATATTTCTACATGCCAATG
766 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATC
* * *
14844193 CCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGACGTTTCATGGCA
831 CCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
14844257 AGACAACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
**
14844321 TTTTCGGAAGGAGTTTTGGCATCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
66 TTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
14844386 AAAAAAATTCAGCTAAAAAATTGAAGTTTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCA
130 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14844451 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
195 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * ** *
14844516 TAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCAC
260 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGC
* * ** * * ** * *
14844581 ACATCATGTGCGCACA---CCCCCTGACCCCCC-GATCGTCGAAACCCCAATGCCGTCGGTCAGG
325 ACATCATGTGCGCACACCGCCCCCCGGCCCCCCTGATCACCGGAACCCAAATGCCACCGATCAAG
* * * * * * * *
14844642 TTCTTTGGCGATGCTCCGACGATGGTGCACTGACGAAGAAAAATACGACACCAACACATGCTCGA
390 TTC--T-CCG--G-T-----GATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGA
** * * **
14844707 GCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
444 GCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTATG
* ** * * * * * * * *
14844772 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACTCATGAACCGAGCGTACGGGTGCTCAGC
509 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCGCTCAAC
* * * *
14844837 CGGCCAGAAGGG-TGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCCTACTGCCGATC
574 CGGCCAG-AGGGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTCGATC
* * * * * * * * * * *
14844901 CTGCTATCGCAACCCTCAGTCTGGTCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
638 TTGCTACCACAACCCTCAATCCGGACAGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCA
* * * **
14844966 ACCGATGAAACGAGC------G-GG-C--G-GGC-ACTACGCCGGCCAGAGAGACGGGAAGCGTA
703 ACCGACGAAACGAGCGGGAGAGCGGACGGGCGGCAACTACGCCGGCCAGAGAGAAGGGATGCACA
* *
14845019 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
768 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATCCC
* *
14845084 ATTTTT-CTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCA
833 ATTTTTAC-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
14845146 AGACGACTCGTTTTCTATTTTTCACCATTTTTGAAAATTTTTGCGGTTCGGGATTTTTTAAAATT
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * *
14845211 TTTTCAGAAGAAGTTTTGGCACCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
66 TTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
14845276 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
130 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14845341 TTTCAGACACTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
195 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * ** *
14845406 TGAGTTCAT-GAGGTTTAATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
260 TGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCG
* ** *
14845470 CACATCATGTGCGAACACTCACCCCGGCCCCCCCGACCGTCGGAACCCCAATGC-CGTCAGAACC
324 CACATCATGTGCG--CA--CA--CC-G-CCCCCCGGCC--C----CCCTGAT-CAC--CGGAACC
* * * * * * *
14845534 CCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCA
372 CAAATGCCACCGATCAAGTTCT-C--CG--G-T-----GATGGTGCCCCGGCAAAGAAAAATGCG
* * * * * *
14845599 GCACCAACACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATATTAGACT
426 GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACT
** * * * * *
14845664 GGGAATGCACTCCGTATGCTTAGATTCGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
491 ACGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * **
14845729 AGCGCGCG-GCTGCTCAGCCGGCTAGATGGG-CGGGATGCGCAGGCCGGGGATCGTTCGGGTCCC
556 AACGTGCGAGC-GCTCAACCGGCCAGA-GGGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCC
* * ** * ** * * * * *
14845792 CTTCTGCATGCTG-CTGATCCAGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATG
619 CCTCTGCATACTGTC-GATCTTGCTACCACAACCCTCAATCCGGACAGATCTTAGACTAGAAATG
* * * * * *
14845856 AACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAAGCGGGCGGGTGGGCAGGCGGGC-ACTAC
683 AACTCCATATGCCTAAGCCAACCGACGAAAC--G--AGCGGGAGAGCGGACGGGC-GGCAACTAC
*
14845920 GCCGGCCAGAGA-AATGGGATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
743 GCCGGCCAGAGAGAA-GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* ** * * * *
14845984 TCTTCATATTTCTGTGTGCTAATGCCATTTATATGGCTTGTAAATTCATACAATGGTCCCTTAAG
807 TCTTCATATTTATGCATGCCAATCCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAG
14846049 CCTTCACGTGAAGTTTCATGGCA
872 CCTTCACGTGAAGTTTCATGGCA
* **
14846072 AGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
1 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * *
14846137 TTTTTGGAAAGAGTTATGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
66 TTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
14846202 AAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCGA
130 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
14846267 TTTCAGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
195 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** *
14846332 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATTGC
260 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGC
** * * * *
14846397 ACATCATGTGCGCA-ACC-CCTCCCCAACCCCCC-GATCGCC-GAACCC-AATGCC-GCGGTCAG
325 ACATCATGTGCGCACACCGCC-CCCCGGCCCCCCTGATCACCGGAACCCAAATGCCACCGATCAA
** ** * *
14846456 GTTCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACACATACTCGAGCCCAGCATG
389 GTTCTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
* *
14846521 TGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT-GACTGG
454 TGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAAACTGG
* * * * *
14846585 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGTGCTCAGCCGACTAGAG
519 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGAGCGCTCAACCGGCCAGAG
* * * ** * * * * ** *
14846649 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG-CAAATCCTGCTGTCG
583 GGACGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTC-GATCTTGCTACCA
*** * * * ** * *
14846713 CAACCCTTGGTCC-GATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACAGATGA
647 CAACCCTCAATCCGGA-CAGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGA
* * * * * *
14846777 AACGAGCGGGCGGGCAGG-CAGACGGGC-ACTACGCTC-GCCAGAGAGACGGGATGCGCAAGCCG
711 AACGAGCGGGAGAGC-GGACGGGC-GGCAACTACGC-CGGCCAGAGAGAAGGGATGCACAAGCCG
* * * * *
14846839 TGGATCGATATGGTGGTTGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
773 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATCCCATTTT
** *
14846904 TGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTCATGGCA
838 TACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
14846961 AGA
1 AGA
14846964 TGAATTTACA
Statistics
Matches: 3792, Mismatches: 491, Indels: 349
0.82 0.11 0.08
Matches are distributed among these distances:
842 61 0.02
843 329 0.09
844 202 0.05
845 6 0.00
846 5 0.00
848 8 0.00
850 6 0.00
851 5 0.00
852 8 0.00
853 5 0.00
854 2 0.00
855 2 0.00
856 8 0.00
857 1 0.00
858 7 0.00
859 2 0.00
860 2 0.00
862 3 0.00
864 5 0.00
865 1 0.00
866 14 0.00
867 3 0.00
868 4 0.00
869 6 0.00
870 9 0.00
871 4 0.00
872 4 0.00
873 7 0.00
874 6 0.00
875 5 0.00
876 2 0.00
877 12 0.00
878 1 0.00
879 4 0.00
881 3 0.00
883 2 0.00
884 2 0.00
885 7 0.00
886 1 0.00
887 10 0.00
888 12 0.00
889 306 0.08
890 315 0.08
891 13 0.00
892 46 0.01
893 178 0.05
894 109 0.03
895 4 0.00
896 9 0.00
897 2 0.00
898 5 0.00
899 264 0.07
900 187 0.05
901 49 0.01
902 560 0.15
903 128 0.03
904 1 0.00
905 12 0.00
906 6 0.00
907 9 0.00
908 4 0.00
909 5 0.00
910 308 0.08
911 3 0.00
912 1 0.00
914 3 0.00
915 1 0.00
916 2 0.00
917 7 0.00
919 2 0.00
920 1 0.00
921 3 0.00
922 1 0.00
924 3 0.00
925 2 0.00
926 457 0.12
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
TTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACAAATCGCA
CATCATGTGCGCACACCGCCCCCCGGCCCCCCTGATCACCGGAACCCAAATGCCACCGATCAAGT
TCTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
CTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTACGAATGAACTCCGTATGCTTAAACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCCAGAGGGA
CGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCCTCTGCATACTGTCGATCTTGCTACCACAAC
CCTCAATCCGGACAGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA
GCGGGAGAGCGGACGGGCGGCAACTACGCCGGCCAGAGAGAAGGGATGCACAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATCCCATTTTTACGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
Found at i:14843879 original size:26 final size:26
Alignment explanation
Indices: 14843850--14843900 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14843840 CTGGTCCGAT
*
14843850 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGAGGAATGAACTCCGTATG
*
14843876 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACGAGGAATGAACTCCGTAT
14843901 CTAATCAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCCGTATG
Found at i:14845526 original size:17 final size:17
Alignment explanation
Indices: 14845506--14845542 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
14845496 GCCCCCCCGA
*
14845506 CCGTCGGAACCCCAATG
1 CCGTCAGAACCCCAATG
14845523 CCGTCAGAACCCCAATG
1 CCGTCAGAACCCCAATG
14845540 CCG
1 CCG
14845543 CCGGTCAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.43, G:0.22, T:0.11
Consensus pattern (17 bp):
CCGTCAGAACCCCAATG
Found at i:14845686 original size:26 final size:26
Alignment explanation
Indices: 14845657--14845708 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14845647 CAGTCCGATA
* *
14845657 TTAGACTGGGAATGCACTCCGTATGC
1 TTAGACTCGGAATGAACTCCGTATGC
*
14845683 TTAGATTCGGAATGAACTCCGTATGC
1 TTAGACTCGGAATGAACTCCGTATGC
14845709 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTCGGAATGAACTCCGTATGC
Found at i:14846402 original size:926 final size:906
Alignment explanation
Indices: 14843778--14846963 Score: 4306
Period size: 926 Copynumber: 3.5 Consensus size: 906
14843768 GGCGCTGCTT
* * * *
14843778 CGACGAAGAAAAATGTGGCACCAGCACATG-CACGAGCCCAGCATGTGCTATCGTAA-CCT-GGT
1 CGACGAAGAAAAATGCGGCACCAACACATGCCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGT
* * *
14843840 CTGGTCCGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTAT--CT
66 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
14843903 AA-TCAA-CCACAAAACGAGCGTTCG-GGC-ACTCAACCGACCAGAGGGGCGGGATGCGCAAGCC
131 AAGTCAACCCACAAAACGAGCG--CGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC
* * * * ** * *
14843964 GAGGATCGGTCAGGTCCCCCGCTGCGTGCTGCCGATCCTGCTGCCGCAAAGCTCGGTCCGCTCTG
194 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGATCCG
* *
14844029 ATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCA
259 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * *
14844094 GGCAGGCACTACGTCGCCAGAGAGACGGGATGCGGAAGTCGTGGATCGATAGGGTGGTAGGTGGG
324 GGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
14844159 TTTAGGTACTTCATCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
389 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
14844224 GTTCCTTAAGCCTTCACGTGACGTTTCATGGCAAGACAACTCG-TTTCTATTTTTCACGATTTTT
454 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
14844288 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCATCAAACTTGGT
519 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCACCAAACTTGGT
* *
14844353 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTTTACA
584 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
* *
14844418 AGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAA
649 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
14844483 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGG
714 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14844548 CAAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA-CACCCCCTGACCCCCCG
779 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACCA-CCCC-GCCCCCCCG
14844612 A-TCG-----TCG-A-AACCCCAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCCGACGATGGTG
842 ACTCGCCCCATCGCAGAACCCCAATGCCG-CGGTCAGGTTC--TGGCGATGCTCCGACGATGGTG
*
14844669 CAC
904 CCC
* * *
14844672 TGACGAAGAAAAATACGACACCAACACATG-CTCGAGCCCAGCATGTGCTATCGCAACCCTCGGT
1 CGACGAAGAAAAATGCGGCACCAACACATGCCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGT
**
14844736 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCT
66 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * ** * * * * *
14844801 AAGTCAACTCATGAACCGAGCGTACGGGTGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGCTGG
131 AAGTCAACCCACAAAACGAGCGCGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * * *
14844866 GGATCGACCGGGTCCCCCTCTGCCTACTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCCGAT
196 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGATCCGAT
* *
14844931 TTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA--------GC--G--GG
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* *
14844984 CGGGCACTACGCCGGCCAGAGAGACGGGAAGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
326 CGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14845049 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTCTGGCTTGTAAATTCGTACAATGG
390 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14845114 TCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTTG
455 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
14845179 AAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGAAGTTTTGGCACCAAACTTGGT
520 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG-AGTTTTGGCACCAAACTTGGT
* *
14845243 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
584 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
*
14845308 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGCAAA
649 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14845373 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCAT-GAGGTTTAATGACGGATAGGGG
714 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGG
14845437 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGAACACTCACCCCGGCCCCC
778 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG--CAC-CACCCC-GCCCCC
14845502 CCGACCGTCGGAACCCCAATGCCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
839 CCGA-C-TC-G--CCCC-AT--CG-CAGAACCCCAATGCCG-CGGTCAGGTTCT--GGCGATGCT
14845567 CCGACGATGGTGCCC
892 CCGACGATGGTGCCC
* *
14845582 CGACGAAGAAAAATGCAGCACCAACACATGCCT-GAGCCCAGCATGTGCT-GCTGCAACCCTCGG
1 CGACGAAGAAAAATGCGGCACCAACACATGCCTCGAGCCCAGCATGTGCTATC-GCAACCCTCGG
* * * * *
14845645 TCCAGTCCGATATTAGACTGGGAATGCACTCCGTATGCTTAGATTCGGAATGAACTCCGTATGCC
65 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
14845710 TAAGTCAACCCACAAAACGAGCGCGCGGCTGCTCAGCCGGCTAGATGGGCGGGATGCGCAGGCCG
130 TAAGTCAACCCACAAAACGAGCGCGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
14845775 GGGATCGTTCGGGTCCCCTTCTGCATGCTGCTGATCCAGCTACCGCAACCCTCGGTCC-AGTCTG
195 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGA-TCCG
*
14845839 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAAGCGGGCGGGTG
259 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGCGGGCGGGCG
* * **
14845904 GGCAGGCGGGCACTACGCCGGCCAGAGAAATGGGATGTACAAGCCGTGGATCGATAGGGTGGTAG
320 GGCAGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** * *
14845969 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTATATGGCTTGTAAATTCATA
384 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14846034 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGA
449 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
14846099 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGAGTTATGGCCCCAAAC
514 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCACCAAAC
*
14846164 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
579 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
* *
14846229 GTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCA
644 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14846294 GCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
709 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *
14846359 GGGGGCCAATATAAGGGCCAAGTACGAGCACCCATTGCACATCATGTGCGCA--A--CC-CCTCC
774 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACCACCCCGCCCCC
* *
14846419 CCAAC-C-CCCCGATCGCCGAA-CCCAATGCCGCGGTCAGG---T-----T-CTCCGACGATGGT
839 CCGACTCGCCCC-ATCGCAGAACCCCAATGCCGCGGTCAGGTTCTGGCGATGCTCCGACGATGGT
14846472 GCCC
903 GCCC
** * ** * *
14846476 CGGTGAAGAAAAATGCGGCACCAACACAT-ACTCGAGCCCAGCATGTGCTGCCGTAACCCTCGAT
1 CGACGAAGAAAAATGCGGCACCAACACATGCCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGT
*
14846540 CCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT-GACTGGGAATGAACTCCGTATGCCT
66 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
14846604 AAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACTAGAGGGGCGGGATGCGCAAGCCGG
131 AAGTCAACCCACAAAACGAGCGCGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGG
** ** *
14846669 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCAAATCCTGCTGTCGCAACCCTTGGTCCGATCCGAT
196 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGATCCGAT
* * * * *
14846734 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACAGATGAAACGAGCGGGCGGGCAGGCAGA
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
14846799 CGGGCACTACGCTCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTTGGAGGGT
326 CGGGCACTACGC-CGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14846864 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGG
390 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
14846929 TCCCTTAAGCCTTCACGTGAAGTGTCATGGCAAGA
455 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
14846964 TGAATTTACA
Statistics
Matches: 2024, Mismatches: 208, Indels: 125
0.86 0.09 0.05
Matches are distributed among these distances:
888 13 0.01
889 311 0.15
890 305 0.15
891 2 0.00
892 4 0.00
893 192 0.09
894 156 0.08
895 5 0.00
896 61 0.03
897 1 0.00
898 4 0.00
899 6 0.00
900 134 0.07
902 1 0.00
905 9 0.00
906 10 0.00
907 6 0.00
908 3 0.00
909 2 0.00
910 314 0.16
911 2 0.00
912 1 0.00
914 2 0.00
916 1 0.00
917 7 0.00
919 2 0.00
921 1 0.00
922 1 0.00
924 3 0.00
925 1 0.00
926 461 0.23
927 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (906 bp):
CGACGAAGAAAAATGCGGCACCAACACATGCCTCGAGCCCAGCATGTGCTATCGCAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACAAAACGAGCGCGCGGCTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
CGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCACCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACCACCCCGCCCCCCCGACTC
GCCCCATCGCAGAACCCCAATGCCGCGGTCAGGTTCTGGCGATGCTCCGACGATGGTGCCC
Found at i:14846582 original size:25 final size:25
Alignment explanation
Indices: 14846554--14846601 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14846544 TCCGATCTTA
14846554 GACTAGGAATGAACTCCGTATGCTT
1 GACTAGGAATGAACTCCGTATGCTT
*
14846579 GACTGGGAATGAACTCCGTATGC
1 GACTAGGAATGAACTCCGTATGC
14846602 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (25 bp):
GACTAGGAATGAACTCCGTATGCTT
Found at i:14847310 original size:26 final size:26
Alignment explanation
Indices: 14847272--14847324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14847262 GTTGACTTAG
*
14847272 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14847298 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14847324 G
1 G
14847325 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14848209 original size:26 final size:26
Alignment explanation
Indices: 14848171--14848224 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14848161 TGGGTTGACT
* * *
14848171 TAGGCATATGGAGTTTATTTCTAGTC
1 TAGGCATACGGAGTTCATTTCCAGTC
14848197 TAGGCATACGGAGTTCATTTCCAGTC
1 TAGGCATACGGAGTTCATTTCCAGTC
14848223 TA
1 TA
14848225 AGATCGGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTTCCAGTC
Found at i:14848830 original size:903 final size:899
Alignment explanation
Indices: 14846963--14857045 Score: 13098
Period size: 903 Copynumber: 11.2 Consensus size: 899
14846953 TCATGGCAAG
*
14846963 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AA-ATGAAGATGTGCCTCAA-CCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
14847025 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGTG--C-CCG--C-
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCG
* * * *
14847084 CCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATATGGTGTTCATTCCCAGTCTAAGATCAGACCA
131 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * ** * *
14847149 GACTGAGGGTTGCAGCAACAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGC
196 GACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * *
14847214 GCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGTGTTGACTTAGGCATACG
261 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
14847279 GAGTTCATTCCTAGTCTAAGCATACGGCGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGT
326 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGACCGAGGGT
* * *
14847344 TGCGGCAGCACATGCTAGGCTCGGGCATGTG-TCGGTGCCGTATTTTTCTTCGCTGGGGCACCAT
390 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * *
14847408 CG-CTGGAGCATCGTCGGAGAACCTGACCGATGGCATTTGGGTTCCGACGATCGGGGGGCCGGGG
454 CGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
*
14847472 GGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
518 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
14847537 TCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
583 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
14847602 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
648 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
14847667 TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGG
713 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGG
* * * **
14847732 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCATAAAAATTTTTGAAAATCGTGAAA
777 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
14847797 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
842 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** * * * *
14847855 ATGAATTTACAAGCTGTAAAAATGGCATTGGCATGGAGAAATATGTAGATGTCCCTAAACACACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
14847920 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCT
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC
* * * * * **
14847985 GCGCGCCCGCTCATTTCATCGGTTGGCTTAGGCATATGAAGTTCATTCCTAGTCTAAGATTGGAC
130 GC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
14848050 CAGACCGAGGGTTGCTGTAACAGGATCGACAG-ACGTAGAGGGGGACCCGATCGATCCCCAGCGT
194 CAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
** * * *
14848114 ATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATA
259 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * * * *
14848179 TGGAGTTTATTTCTAGTCTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGATGGATCCAAGG
324 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGA-CCGAGG
* * * *
14848244 GTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCA
388 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * ** * * *
14848309 TCGTCGGAGGATTGCCAAAGAACCTAACCGACGGCATTGGGGTTCCGACGATCAGAGGGGCTGGG
453 TCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC-CGG
* ** * *
14848374 GGGGTGTGCTCACATGATGTGCGATACGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCGCT
516 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
14848439 TATCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGT
581 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
14848504 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
646 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
14848569 GTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
711 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * **
14848634 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCGCAAACCGTAAAATGTTTTGAAAATCGTGAA
776 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* * * *
14848699 AAATAGAAAACGAGTCGTGTCGCCATGAAACTTCACGTGAAGGCTTAAAGGAGCATTGT
841 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * * * * * *
14848758 ATCAATTTACAAGCCATAAAAATAGCATTGGTACGTAGAAATATGTAGATGTCCCTAAACACACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
** **
14848823 TACCACCCTATCGATCCACGGCTTGCGCATATCGTCTCTCTGGCCGACGTAGTGTTCGTCCGCCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC
* * * * *
14848888 ACCCGCCCGCTCGTTTCGTAGGATGGCTTAGGCATAAGGAGTTCATTCACAGTCTAAGATCAGAC
130 -GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
14848953 CGGACCGAGGGCTGCAGCAGCAGGATTGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTT
194 CAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
14849018 ACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATT
259 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
14849083 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCGAGG
324 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATA-GACCGAGG
* * * * * * *
14849148 GTTACAGTAGCACATGCCGGGCTTGGGCATGTGCTGGTGCCGTATTTTTTCTTCGCCAGGGCACC
388 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGCCGGGGCACC
* * * ** *
14849213 ATCGCCAGAGCATCGCCAGAGAACCTGA-CGGTGGCATTGCGGTTCCGACGATCAGGGGGGCCAG
452 ATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-G
*
14849277 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGTCCCCCTAT-CC
515 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
14849340 TCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
580 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * * *
14849405 TAGCCATTAAAGTGTTTGGAATGGGCACACTTTTTTCAAATGGTCACAAAATATTGTAAACTTTG
645 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
14849470 AGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTTG
710 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
14849534 GACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGA
775 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
14849599 AAAATAGAAAACGAGTCGTCTTGCCATTAAAACTTCATGTGAAGGCTTAAGGGACCATTGT
840 AAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *** *
14849660 TTTAATTTACAAGCCATAAAAATGGCATTGACACATAGAAATATGAAGGTGTGCCTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
14849725 TACCACCCTATCGATCCACGGCTTACGCATCCCGT-TCTTTGGCCGACGTAGTGCCCGCCTGCCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCC
* **
14849789 GCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
130 GC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * *
14849854 CGGATCGAGGGTTGC---AGCAAGATCGACAACACGCAGAGGGGGACTCTATCGATCCCCGACTT
194 CAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * * *
14849916 GTGCATCCCACCCCTCTGGCCGGCTGAGTGGCCGCACGCTCATTTCATGGGTTGACATAGGCATA
259 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
14849981 CGGAGTTCATTCCCTGTCTAAG-AT-C-G-G---------A-TC-AA-A-C---T-----GAGGG
324 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGACCGAGGG
* * **
14850021 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGTACACCAT
389 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* ** * ** * * *
14850086 CGCCGGAGCATCATCGGAGAACCTGACAGGTGGCATTGGGGTTTCGGCGATCGGTGGGGTCGGGG
454 CGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG-C-CGG
* * * *
14850151 GGGGTGTGCGCATATGATGTGTGATGGGTGCTGGTACTTCGCCCTTATATTGGCCACC-ATCCCT
516 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
14850215 CATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGT
581 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
14850280 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAA
646 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
14850345 GTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCCAGCAAGTTTGGG
711 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
14850409 GCCAAAACTCCATCCAAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAA
776 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
14850474 AAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
841 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
14850533 ATGAATTTACAAACCAAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
14850598 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTC-AGCGTAGTGCCCGCTCGCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGC-CGCC
* * ** *
14850662 TGCCTGCCCGCTTGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
129 CGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * ** * * * * *
14850727 CCAGACTGAGGGTTGCGGTAGTAGGGCCGATAGCACGCATAGGGTGACCCGATCGATCCTCGGCT
193 CCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * *
14850792 TGCGTATCCCGCCCCTCTGGTCGACTAAGCGCCCGCACGCT-GTTT-ATGGGTTGACTTAGGCAT
258 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
14850855 ACGAAATTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAT
323 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-AGACCGAG
* * * **
14850920 GGTTACGGCAGCACATGCTAGG-TCGGGCATGTGCTGGTGCCCCATTTTTCTTTCATCGGGGCAC
387 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCAC
* * *
14850984 CATCGTCAGAGCATCGCCGGAGAAACTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGCCGG
451 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* *
14851049 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATT-GCCCCCTAT-CCT
516 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
14851112 CGATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAA
581 C-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
14851177 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
645 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
14851242 AGTTTTT--CTTGAATTTTTTTATGCATACCAAC-AAAATACAAGGATCACGTCTACCAAGTTTG
710 AGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
14851304 GGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATG
774 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
14851369 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
839 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
14851430 ATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
**
14851495 TACCACCCTATCGATCCATTGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCG
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCG
* * * * **
14851557 CACGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTAGATT
131 C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * ** *
14851622 GGATCGAGGGTTGTGGTAGCAGGATCGACAACACAAAGAGGGGGGACCC-AGCCGATCCCCAGCT
195 AGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGA-GGGGGACCCGA-CCGATCCCCGGCT
* * * * *
14851686 TGCGCATCCCGCCCCTCAGGCCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCTT
258 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
14851751 ACGGAGTTCATTCCCAGTCTAA-CTATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
323 ACGGAGTTCATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGACCGA
* * * * * * *
14851815 GGGTTGTGGCAGCACATGCTGGGCTGGGGCAAGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCAC
386 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * * ** *
14851880 CA---TC---G--T---CGGAGAACTTGATCGACGGTATCGGGATTCCGGTGATCAGGGGGCCGG
451 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--
* * *
14851934 AGGGGAGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCACCTAT
514 -GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
14851999 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
577 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
14852064 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCA-AAAATATTTTACACT
642 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
14852128 TCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGA-GAAGT
707 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGT
*
14852192 TTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
771 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
14852256 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
836 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
14852320 ATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
14852385 TACCACCATATCGATCCACCGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGCGCCTGCCCGGCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-GCC
* * * * * *
14852450 CGTCCGCCCACTCTTTTTGTCGGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
129 CG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * ** * * * *
14852515 CCAAACCGAGGGTTAC-GACAGTAGGATTGGTAGCATGCAGAAGGGGACCCGATCGATCCCTGGC
193 CCAGACCGAGGGTTGCAG-TAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * * * *
14852579 TTACGCATCTCGCTCCTCTAGCCGGCTGAGCTCCCGTACGCTCGTTTCATGGGTTGACTTAGCCA
257 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * **
14852644 TACGGGGTTCATTCCCAGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGA
322 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGATAGACCGA
** ** * *
14852709 GGGTTATGGCAGCACATGCTGGGCTCAAGCATGTGTTGGTGTCGCATTTTTCTTCGCCGGGGCAC
386 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* *
14852774 CATCG-CAGGAGCATCGCCGGAGAATCGCCAGAGAACCTGATCGGCGGCATTAGGGTTCCGAC-A
451 CATCGTC-GGAGCATCGCCGGAGAA---CC--TG-ACC-GA----CGGCATTGGGGTTCCGACGA
14852837 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
504 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * * *
14852902 GCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTCTATAC
568 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* **
14852967 GTTTGCTGCCACTAGCCGCTAAAGTGTCTGAAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT
633 GTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
14853031 CATGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGT
697 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*** * * *
14853096 CTACCAAGTTTGGGTTGAAAACTCCTTCC-AAAAACTTTTAAAGAATCCCGAACCATAAAAAGTT
762 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * *
14853160 TCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATAAAACTTCACGTAAAGGCTTAAGGG
827 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
14853225 ACCATTGT
892 ACCATTGT
* *
14853233 ATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAAATATGAAGATGTGCCCAAACCCAC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCAC
* * * * * *
14853298 CGACCACCCTATCGATCAACGGCCTGCGCATCCTGTCTCTCTGGCCGTCGTAGTGCCCGCCCACC
65 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-GC
14853363 CGATCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
128 C---CGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
14853428 TAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCTACCGATCCCC
189 CAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCC
* * ** *
14853493 GGCTTACGCATCCCGCCCCTCTGGCCGACTGAGTACCCGCACGCTCATTTCGTGGGTTGACTTAG
254 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
14853558 GCATACGAAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
319 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGAC
* * * * * *
14853623 CGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGTCGTATTTTTCTTCACCGGGG
383 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * **
14853688 CACCATCGTCGGAGCATCGTCGGAGAACCTGATCGATGGCATTGGGGTTCCGGTGATCGAGGGGG
448 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG
* * * *
14853753 CCGGGTGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGTCCTTGTGTTGGCCCCCT
512 CC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
14853818 ATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCT
575 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
14853883 GCCAGAAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
640 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
14853948 CTTTGAGTTTTTAGCTGAATTTTTTTTTGCGTGCCAACAAAAATACAGGGATCACGTCTATCAAG
705 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * * * * *
14854013 TTTAGGGCCAGAAA-TCCTTCC-AAAAAAGTGCTAAAAAATCTCGAACTGCAGAAAGTTTTAAAA
770 TTTGGGGCCA-AAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
14854076 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
833 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
14854141 GT
898 GT
* *
14854143 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCGTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
14854208 TACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGGCCGCCCGCCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC
* * *
14854273 GTCCGCCTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAG
130 G-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * ** * *
14854338 CAGATTGAGGGTTGCGGTAGTAGGATC-AGCAGCACGTAGAGGGGGATTC-AGCCGATCGCCGAC
194 CAGACCGAGGGTTGCAGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGC
* * * * **
14854401 TTGTGCATCCCGCCCATCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACTCA
257 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
14854466 TACGGAATTCATTCCCAATCTAAGCATACGGACTTCATTCCCAGTCTAAGATCGAACTAGACCAA
322 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGACCGA
* * * *
14854531 GGGTTGCGGTAGCACTTGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCAC
386 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * *
14854596 CATC-ACTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC
451 CATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGG-C
*
14854660 CGGGGGGTGTGCGCAC-TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
513 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
14854724 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
578 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
14854789 AGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
643 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
14854854 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTTCCAAGTTT
708 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** *
14854919 GGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCAAACCCCAAAAAGTTTCAAAAATCTT
773 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
14854984 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
838 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* **
14855046 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTAACTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
14855111 TACCACCCAACCGATCCTTGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCG--C-
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCG
* * * * *
14855170 CCGTCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCATATCA
131 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
14855235 GACTGAGGGTT-CAGACAGTC-GGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTT
196 GACCGAGGGTTGCAG-TAG-CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * *
14855298 GCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA
259 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
14855363 CGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATAGACCGAGG
324 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GATAGACCGAGG
* * * * *
14855428 GTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACTGCGGCACCA
388 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * **
14855493 TCGCCGGAGCATCGCTGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGG
453 TCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG
* *
14855558 GGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
517 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
14855623 ATCAAACCTCAAGAACTCACATCCTCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
582 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
14855687 GCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
647 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * ** *
14855752 TTTCTAGTTGAA-TTTTTTGTGCATGTGAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
712 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
14855816 CCAAAACTCTTTCCGAAAAGATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAA
777 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
14855881 AA-AGAAAACAAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
842 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
14855938 ATGAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
14856003 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACCC
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC
* *
14856068 ACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
130 -GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * ***
14856133 TGGACCAAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
194 CAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* ** * * * *
14856198 GTGCATCTTGCCCCTCTGGCCGGCTGAGGGCTCGCTCGCTCATTTCGTGGGTTGACTTAGGCATA
259 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * **
14856263 CGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATCCCCAGTCAAAGAACGGACCGAACCGAGG
324 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAG-ACCGAGG
* * * * * *
14856328 GTTGTGACAGCACATGTTGGGCTCGGCCATGTGCAGGTGCCACATTTTTCTTCGCCGGGGCACCA
388 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
** * *** ** * **
14856393 TCACCGAAGCATCATTGGAGAACCTGACCGGTGGCATTTGGGTTCCGACGATCGGGACAGCCGGG
453 TCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGG
*
14856458 GGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
517 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
14856523 ATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAA
582 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
14856588 GCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAG
647 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
14856653 TTTTTAACTGACTTTTTTTATGCAGGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGG
712 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * **
14856718 CCAAAACTCTTTCCGAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAA
777 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * * *
14856783 AATAGAAATCGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGAG-CCACTGT
842 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*** * *
14856840 ATGAATTTACAAGCCAT-AAAATGGCATTGGCACATAGAAAAATGAAGATGTGCCCAAACCCACC
1 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
14856904 TACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACGTAGTG--C-CCGCCCG
66 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCG
* * * *
14856966 CTCGCCCACTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
131 C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* *
14857031 AGACCAAGCGTTGCA
195 AGACCGAGGGTTGCA
14857046 ACAGCACATG
Statistics
Matches: 8039, Mismatches: 980, Indels: 339
0.86 0.10 0.04
Matches are distributed among these distances:
871 42 0.01
872 66 0.01
873 167 0.02
874 337 0.04
875 68 0.01
876 5 0.00
877 68 0.01
878 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 37 0.00
888 6 0.00
889 68 0.01
890 349 0.04
891 47 0.01
892 199 0.02
893 195 0.02
894 384 0.05
895 548 0.07
896 127 0.02
897 373 0.05
898 293 0.04
899 14 0.00
900 449 0.06
901 487 0.06
902 624 0.08
903 905 0.11
904 505 0.06
905 378 0.05
906 21 0.00
907 10 0.00
908 9 0.00
909 320 0.04
910 130 0.02
911 4 0.00
912 157 0.02
913 231 0.03
914 81 0.01
915 3 0.00
916 23 0.00
917 299 0.04
918 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCG
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
Found at i:14849107 original size:26 final size:26
Alignment explanation
Indices: 14849078--14849130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14849068 GTTGACTTAG
*
14849078 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14849104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14849130 G
1 G
14849131 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14853595 original size:26 final size:26
Alignment explanation
Indices: 14853558--14853610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14853548 GTTGACTTAG
14853558 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
* *
14853584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
14853610 G
1 G
14853611 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:14854502 original size:26 final size:26
Alignment explanation
Indices: 14854464--14854515 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854454 TTGACTTACT
14854464 CATACGGAATTCATTCCCAATCTAAG
1 CATACGGAATTCATTCCCAATCTAAG
* *
14854490 CATACGGACTTCATTCCCAGTCTAAG
1 CATACGGAATTCATTCCCAATCTAAG
14854516 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAATCTAAG
Found at i:14855388 original size:26 final size:26
Alignment explanation
Indices: 14855358--14855410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14855348 GTTGACTTAG
14855358 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
14855384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14855410 G
1 G
14855411 ATCGAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:14858752 original size:26 final size:26
Alignment explanation
Indices: 14858715--14858764 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14858705 GTTGACTTAG
*
14858715 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14858741 GCATACAAAGTTCATTCCCAGTCT
1 GCATACAAAGTTCATTCCCAGTCT
14858765 CAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:14861280 original size:26 final size:26
Alignment explanation
Indices: 14861244--14861299 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14861234 TGAGTTGACT
*
14861244 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
14861270 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
14861296 TAAG
1 TAAG
14861300 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:14863044 original size:26 final size:26
Alignment explanation
Indices: 14863008--14863061 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14862998 TGGGTTGACT
*
14863008 TAGGCATACGGGGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
14863034 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
14863060 TA
1 TA
14863062 AGATCAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:14863945 original size:26 final size:26
Alignment explanation
Indices: 14863915--14863967 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14863905 GTTGACTTAG
14863915 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14863941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14863967 G
1 G
14863968 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14864010 original size:904 final size:899
Alignment explanation
Indices: 14862147--14874616 Score: 12573
Period size: 904 Copynumber: 13.8 Consensus size: 899
14862137 GTTGGCTTAG
* * * * * **
14862147 GCATACGGGGTTCATTCTCGGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
14862212 CTCGCGCATGTGCTGGTGTCGTATTTTTCTTCGTC---G----A-------AGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
14862263 ACCTGAACGGCGGCATTGGGGTTCCGATGATCCGGGGGGCCAGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
14862328 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
14862393 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
14862458 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
14862523 TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
14862588 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCCTGTT
455 ATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
14862653 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
14862718 TTGGCATGTAGAAATATGAGGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
14862783 CATCCCGTCTCTCTGGCCGGCGTAGTGACCGCCCGCCTGCCCGCCTGCTCGTTTCGTTGGTTGCC
649 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
14862848 TTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGA-TTGAACCAAGGGTTAC-GACAGCAGGA
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGCAG-CAGCAGGA
** * * * * * * * *
14862911 TCGATAGCACACAGAGGGGGACGCGGCTGATCCCCGGCTCGAGCATCCCGCCCATCCGGCCGGCT
774 TCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
14862976 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAG
839 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
14863037 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGATAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
14863102 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATTGTTGGAACATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * *
14863167 ACCTGACCGGCGGCATTGGGGTTCCGGCAATC-GGGGGGCCGGGGGTGTGAGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGG-GTGTGCGCACATGATGTG
* *
14863231 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAGTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14863296 ACGCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
14863361 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14863426 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCGGGGCCAAAACACCATCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
14863491 ATTTAAAAAAAATACCAAACTACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
455 ATTT-TAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
14863556 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCCTTGTATGAATTTACAAGCCATAAAAATGGA
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14863621 ACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
14863686 GCATCCCATCTCTCTGCCCGGCGTCGTGGCCGCCCACCCGCCCGCCCGCTCGTTCCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
14863751 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAAGGTTGCAGCAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAGGAT
* * * ** * * *
14863816 CGGCAGCACGTAGAGGGGGACCTGATCC-ATCCCTGGCTTGCGCATCCTACCACTCTGGCTGGTT
775 CGGCAGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
14863880 GAGCGCCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14863941 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG-CTGG
* * *
14864005 GCTCGGGCATGTGCTGGTGCCGTATTATTCTTCCTCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
** * * * *
14864070 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGTCCGGGGGGGTGTGCTCAAATGTTGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
14864134 GCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14864199 CACCCACTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14864264 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
14864329 GTGCATGCCAA-ATAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTTCGAAA
389 GTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
14864393 AAATTTTAAAAAATCTCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
453 AAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
14864458 TCGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
14864523 CATTGGCATGCAGAAATATG-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTC
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
14864587 CGCATCCCATCTTTCTGGCTAGCGTAGT-GCCCGCCCGCACGCCCGCTCGTTTCATCGGTTGGCT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * *
14864651 TAGGCATACGGAGTTCATTCCCAGTATAAGATCAAACTGGA-CTAAGGGTTGCGGCAACAGGATC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGCAGCAGCAGGATC
* * ** * * * *
14864715 GACAGCACGCAGAGGGGGACCCGACCGATTGCCAGCTTGTGCATCCCGCCCCTCTGGTCGACTGA
776 GGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * * *
14864780 ACGCTCGTACGCTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** *
14864839 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
14864904 CTCGAGCATATGCTGGTGCCGCATTTTGCTTCG-CTGGGGCACCATTGCCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
14864968 AACCTAATCGACAGCATTGGGGTTCCGGTGATCA-GGGGGCCGGGGGGTGTACGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
14865032 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
14865097 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14865162 GGGCACACTTTTTTCAAATGGTCACAAAATGTTGTACACTACGAATTTTTAGCT-AATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* ** * *
14865226 GTGCTTGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGTGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
14865291 AATTTTAAAAAAT-C---CTG----AA----C------C--G-----T--AAAA--A---GTCTT
454 AATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
14865324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
14865389 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACGTTCCATCCTATCGATCCATGGCTTGTG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * *
14865454 CAACCTATCTCTCTGGCCGGCGTA-TTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGCCTTA
649 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
14865518 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGATTGAGGGTTGCAGTAGTAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAGGATCGGC
* * *
14865583 AGCACGCAGAGGGGGACCTGGT-CGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
779 AGCACGCAGAGGGGGACC-CGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
14865647 GCTCGCA---T-G-CTCA----TT--C-----CAT--GG-GTTGA----C---CTAG
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14865678 GCATACGGAGTTGATTCCCAGTCAAAGATCAGACCAGACCCAGGGTTGCAGCAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
14865742 CT-GGGACATGTGCT-GCGCCGCATTTTTCTTTGTCGGCGGAAAACCATCGTC-GAGCATCGTCG
66 CTCGGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GG--CACCATCGCCGGAGCATCGTC-
* * ** * *
14865804 GCGAGAACTTGGACCGACTGGCATTGGTCTGTCCGGCGATCAGGGGGGCC-GAGGGTGT-CGCAC
126 G-GAGAACCT-GACCGGC-GGCATTGGGGT-TCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCAC
* *
14865867 AAAGATATTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
187 -ATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
14865931 AAGAACTCACACACCCTTAAAGAGC-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
250 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
14865995 TGTTCTGAAATGGGGACACTTTTTTC-AAT-GTCACAAAATCTTGTACACTTCGACTTTTTAGCT
315 TG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
14866058 GAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
379 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * ** *
14866122 CTTCCAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
444 CTTCCGAAAAAA-TTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * *
14866187 ATGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACC
507 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
14866252 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCATCCTATCGAT
572 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * * *
14866317 CCATGGCTTGCGTAACCCATCTCTCTGGCCGACGTA-TTGCCCGCCCGCCTGTCCGCTCATTTTG
637 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * *
14866381 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAAACCAGATC-AAGGGTTACAG
702 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGCAG
* * * * *
14866445 CAGTAGGATCGGCAGCACACAGAGGGGAACCCGGT-CGATCACCAGCTTGCGCATCCCGCCCCTC
766 CAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
14866509 TGGCCGGCTGAACGCCCGCACG--C---TCA----TT--C-----CAT--GG-G--C--T--GAG
830 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
14866549 -CTAG
895 TCTAA
* * * * *
14866553 GCATACGGAGTTGATTCCCAGTCAAAGATCAGACCAGGCCGAGCGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * ** *
14866618 TTGGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTGGGGCACCATCGCTAGAGTATCACCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
14866682 AACTTGACCGGCGGCATTGGTGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14866747 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
14866812 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14866877 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGCACACTTCGACTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
14866942 TCCATTCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
14867007 TTTTTAAAAAATCCAAAACTGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAAC-ATGTCGTCT
455 ATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCT
*
14867071 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
14867136 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTAC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
14867201 GCACCCCGTTTCTCTGGCCGGCGTAGT-GCCCGCCC-CTACGCCCGCTCGTTTCGTCAGTTGGCT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
14867264 TAGGCAAATGGAGTTCATTCCCAGTATAAGATCAAACC-GAATCGAGGGTTACGGCAACAGGATC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ATCGAAGGTTGCAGCAGCAGGATC
* * * **
14867328 CGCAGCATGCAGAGGGGGACCTGTCCGATTGCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
776 GGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
14867393 GCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *** * * *
14867452 GCATAAGGAGTTCTTTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGTGGCAGTACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
14867517 CTCGGGCATATGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCATTGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
14867582 ACCTGACCGACGACATTGGTGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
14867647 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
14867711 CCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
14867776 GGGACATTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * *
14867841 GCATGGGAACAAAAATAAAAGGATCACATATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
14867906 TTTTTAAAAATTCTGAACC-CTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
456 -TTTTAAAAAATCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
14867970 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
14868035 TTGGCATGTAGAAATATGAAGATGTGTCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * *
14868100 CAACCCGTCTCTCTGGCCGGCTTA-TTACCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
14868164 GGCATACGGATTTCATTCCTAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGCAGGATCGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAGGATCGGC
* * * * * * *
14868229 AGCACGCAGAGTGGAAACCGAT-CGATCGCCGGCTTGAGCATCCCACCCCTCTGGCCAGCTGAGC
779 AGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
14868293 GCCCGCACGCTCATTACATGGGTTGACTTAGGCATAC-G-G---------AG--T--
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14868335 ---T-----G---ATTCCCGGTCTAAGATCAGGCCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
14868389 CTCGAACATGTGCTGGTGCCGTATTTTTTTTTGCCGGGGCACTATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
14868454 ACTTGACCGGCGACATTGGTGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATATGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
14868519 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
14868584 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
14868649 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
14868714 GCAAG-CAAAAAACAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAA
391 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
14868778 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAGAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
14868843 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTTA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
14868908 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
14868973 CATCCCATCTCTCTGGTCGGCGTAGTAC-CCCGCCCGCCCGCTCACCCGCTCGTTTCATCGATTG
649 CATCCCGTCTCTCTGGCCGGCGTAGT-CGCCCGCCCGCCCG----CCCGCTCGTTTCGTCGGTTG
* * *
14869037 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG--CCAGAGGGT-CACGACAGTA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA-AGGTTGCA-G-CAGCA
* * * ** * ** *
14869099 GGATCGACAGCATGCAAAGGGCAACCCGGCCGATCCCCGGCTTGCGCATCGTGCCCCTCTGCCCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
14869164 GCTGAGCACCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
14869228 GCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
14869293 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGG-TCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGTCGGAG
* ** * *
14869357 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATCATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
14869422 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14869487 ACCCCCTTAATGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
14869552 GTGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATATTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
14869617 TGCATTCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTGCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
14869682 ATTTTTAAAAATCCAAAACCGTAAAAAGTTTCAAAAATTGTTAAAAATAGAAAAC-ATGTCGTCT
455 ATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCT
14869746 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
14869811 ATTGGCACACAGAAATATGAAGATGTGCCTAGACCCACCGACCACCCTAACGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
14869876 GCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *** * * * * *
14869940 AGGCATACAGAGTTCATTCTCAGTCTAAGATTTCATCAGA-CCAAGGTT-TATGGCAGGAGGCTC
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCA--GCAGCAGGATC
** * * * * * * *
14870003 GATAGCACGTAGAGGGGGACCAGGCTGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGCTGA
776 GGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
14870068 GTGCCCGCGCGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
14870127 G-AT-C-G-G---------A--C------C-G---A-ACTGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
14870166 CTCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGAACCATTGCCAGAGCATTGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
14870231 ACCTGACCGGCGACATTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACTTGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
14870296 GATGGGTG-TGGTTACTTGACCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 GATGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
14870360 ACCCCCTTAAAGTGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
14870425 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
14870490 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * **
14870555 ATTTTAAAAAATCTTGAACCACAAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCAG-C
455 ATTTTAAAAAATC-CGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-GTC
* * *
14870619 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAACTGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
14870684 CATTGGCATGCAGAAATCTGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
14870749 CGCATCCCGTGTCTCTGGCCGACGTAGTGCCTGCCCGCCTGTCCGCCTGCTCGTTTCGTCTGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGT--C-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
14870814 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAGGA
* * * * * *
14870879 TCAGCAGCACATCATGA--GGGACTCGGCCGATCCCCGGCTTGCGCATCCGGCCCCTCTAGCCGG
774 TCGGCAGCAC-GCA-GAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
14870942 CTGAGCGCCCGTATGCTCGTTTCCTGGGTTGACTTAGGCATAC-GACATTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAA
* * *
14871005 GCATACGGAGTTCATTCCCAGTCTAAGATCTA-ACTAGACCGAGGGTTGCGGCAGCAGGATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGCA-CA-TGCT
** * * * * ** * * *
14871069 AGCACACAGAGGGGGACCCGACCGATCCTCAGCTTACGCATCTTGCCCCTCTGGCTGGCTGAGCG
63 -GGGCTC-----GGG---C-A-TG-TGCT--GGTGCCGCAT-TT----TTCT-TC-GTC-G-G-G
* * * * * ** * ** *
14871134 CCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAA--TTCCCAGTCTAAACATAC
104 ---GCAC-CATCG---C--CGG-AG-C--A-TCGT-CGGAG--AACCTGACC-GGC--GGCAT-T
* * ** * * * * * * * ***
14871196 GGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGACAGCCCATGCTGGGCTCGG
148 GG-G---GTT-CC-G-GT--GATCAGG--GGGGCCGGGGGGTGTG-C-GCACATGATGTGCGATG
* **** * *** * * * ** * *
14871260 GCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCAT-TGCCAGAGC-ATCGC-CGGAGAAG
200 G---GTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAAC-CTC-GAGAA-
* ** *** ** ** *** * *
14871322 CTGAC-CGGCGACATTG-GGTTTCTG-GCAATCGGGGAGGCCGGGGGGGTGTGC-GCACATGATG
255 CTCACACCCCCTTAAAGAGCATT-TGAG--AT--TTTA---C----AGGTTTGCTGC-CA-G-T-
* ** **** * * * * ** * *
14871383 TGTGATGGGTGCTGGTACTTGGCGCTTATAT-TGGCCCCTTATCCCTCACCAA-GCCTCAAGAAC
304 AGCCATTAAAG-T-GT-C-T---G---AAATGGGGACACTT-T-TTTCA--AATG-GTC-ACAA-
* ** * * * ** ** * ** * *
14871446 TCACACCCCCTTAAAAACCATTTGAGATTTTA-C--AGGTTTACTG-CCAGTAGCC-ATTATAGT
352 --A-A---TCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT
* * * ** * *
14871506 GTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTTCAAGTTTTTAG
407 -AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTC----------
* ** * * **
14871567 CTGAATGATTTTGTGCATGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTGGGGCTAAAAC
448 C-GAA-AAAATT-T---T----A-AAAAAT-C-CGAACC--G-C-AAAAAGTTT----C-AAAA-
* * *
14871632 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAA
490 ---AT-CG----------------T---GAA----AAATAG-----AAAA-C--G---AGT----
* *
14871697 AACGAGTCTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCA
513 --C--GTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*** * * *
14871762 TAAAAATGGCATTGGCACATAGAAATATAAAGATGTACCCAAACCCACCTACCACCCTATCGATC
573 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
14871827 CACAGCTTGTGCATCCTGTCTCTCTGGTCGGCATAGT-GCCCGCCCGCCCGCCTGCTCGATTCGT
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * ***
14871891 CGATTGGCTTAGGCATACAGAGTTCA-TCGCCAATCTAAGAT-TGAACCGGATCGAGGGTTTTGG
703 CGGTTGGCTTAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAG-ACCAGATCGAAGGTTGCAG
* * * * * * * * * *
14871954 AAGGAGGATGGGTAGCACGTAGAGGAGGACCCAG-CCGATCCCTGGCTTACGCATCCGGCCCCTT
766 CAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
14872018 TGGCCGGCAGAGCCCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGCGTTCATT-CCAG
830 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
14872082 TCTAA
895 TCTAA
** * * *
14872087 GCATACGGAGTT-ATTCCCAGTCTAAGATTGGA-CGGACCAAGGGTTGC-GCAGCACA-GCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
14872148 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATTGCCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ***
14872213 ATCGGACCGGCGGCATTGGGGTTCCGATGATCAGGAAAGCCGATGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCG--GGGGGTGTGCGCACATGATGT
* * *
14872278 GCAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14872343 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14872408 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
14872473 GTGCATCCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGCGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
14872538 AATTTTAAAAAATCCTGAACCGCAAAATGTTTCCAAAATCGTGAAAAAGAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
14872603 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
14872668 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
14872733 GCATCCCGTCTCTCTGGCCGACGTAGT-GCCCGCTCGTCCGCCCGCCCGCTCGTTTCGTCGGTTG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *** * *
14872797 GCGTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCAGATCGAGGGTTTTGGTAGGAGG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGATCGAAGGTTGCAGCAGCAGG
* * * * * * *
14872861 ATCGACAGCACGTAGAGGGGGACCCG-CCTATCCCCAGTTTGCGCATCCCACCCCTCTGGCCAGC
773 ATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
14872925 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCTAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
14872987 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACTAGACCGAGGGTTGCGACAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
14873052 CTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGTTCACCATCGTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
14873117 ACCTGACCGGTGGCATTAGGGTTTCGAG-GATC-GAGGGGGTCGGGGGGTGTGCGCACATTATGT
131 ACCTGACCGGCGGCATTGGGGTTCCG-GTGATCAG-GGGGGCCGGGGGGTGTGCGCACATGATGT
** * * *
14873180 GCGATGGGTGCTGGTACTTTTCCCTTATATTGGCCCCCTATCCTTCATCAATCCTCGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14873245 CACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
14873309 TGGGGACACTTTTATCAAATTGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
14873374 GTGCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAG
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** *
14873439 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCCGAAATCGTGAAAAAGAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
14873504 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
14873569 ATTGGCATGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
14873634 GCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * *
14873698 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCAAGGGTTATAGTAGCAGGATCA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGCAGCAGCAGGATCG
* * *
14873762 GCACCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
777 GCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * *
14873827 CACCGGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG-TAATTCGCAGTCTAA
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
14873884 GCATATAGAGATCATTCCCAGTCTAAGATCGGACCGGACTGGGGGTTGTC-GCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGGCAGCACATGCTGG
* * * ** * **
14873948 GCTCGGGCATGTGTTGGTGCCGTATTTTCCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * *
14874013 AACCTGACAGTCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGAACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * ** * * *
14874078 GCGATGGCTACTGGTACTTGGCCCTTATATTGATCCCCTATCCTTCATCAAACCTAGATAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
14874143 CAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
14874207 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
14874272 CTGCATTTCAACAACAATATAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
14874337 AATTTTAAAAAATCCCAAACCGCAAAAAGTATCTAAAATGGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
14874402 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAACGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
14874467 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
14874532 GCATCTCGCCCCTCTGGCCGGC----T-G--AG--CACCTGCACGCTCGTTTCG-CGGGTTGACT
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGCT
14874587 TAGGCATACGGAGTTCATTCCCAGTCTAAG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAG
14874617 CATACGGAGT
Statistics
Matches: 9688, Mismatches: 1398, Indels: 988
0.80 0.12 0.08
Matches are distributed among these distances:
837 19 0.00
838 14 0.00
839 64 0.01
840 8 0.00
841 76 0.01
842 48 0.00
843 59 0.01
844 103 0.01
845 27 0.00
846 4 0.00
847 3 0.00
849 3 0.00
851 2 0.00
854 1 0.00
856 2 0.00
860 2 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 83 0.01
865 203 0.02
866 2 0.00
867 1 0.00
868 1 0.00
869 4 0.00
870 42 0.00
871 101 0.01
872 263 0.03
873 1149 0.12
874 270 0.03
875 385 0.04
876 19 0.00
877 29 0.00
878 324 0.03
879 10 0.00
880 5 0.00
881 1 0.00
882 3 0.00
884 3 0.00
885 1 0.00
886 1 0.00
887 2 0.00
888 2 0.00
889 6 0.00
890 137 0.01
891 4 0.00
892 2 0.00
893 2 0.00
894 3 0.00
895 2 0.00
896 155 0.02
897 528 0.05
898 1372 0.14
899 512 0.05
900 121 0.01
901 411 0.04
902 169 0.02
903 416 0.04
904 1514 0.16
905 25 0.00
906 2 0.00
907 3 0.00
908 1 0.00
910 1 0.00
911 4 0.00
912 2 0.00
915 1 0.00
916 6 0.00
917 1 0.00
918 3 0.00
920 10 0.00
921 2 0.00
923 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 1 0.00
929 1 0.00
930 1 0.00
933 5 0.00
934 1 0.00
936 1 0.00
938 1 0.00
939 3 0.00
940 2 0.00
942 1 0.00
944 9 0.00
945 3 0.00
946 2 0.00
947 4 0.00
948 1 0.00
949 7 0.00
950 1 0.00
951 1 0.00
952 2 0.00
953 7 0.00
954 7 0.00
955 2 0.00
956 2 0.00
957 4 0.00
958 10 0.00
959 2 0.00
960 11 0.00
962 1 0.00
963 7 0.00
964 7 0.00
965 7 0.00
966 20 0.00
967 13 0.00
969 1 0.00
972 1 0.00
975 6 0.00
976 9 0.00
977 2 0.00
978 4 0.00
979 11 0.00
980 2 0.00
981 10 0.00
982 12 0.00
983 3 0.00
984 6 0.00
985 11 0.00
986 3 0.00
987 1 0.00
988 7 0.00
989 4 0.00
990 3 0.00
991 4 0.00
992 8 0.00
993 4 0.00
994 3 0.00
995 4 0.00
996 7 0.00
997 1 0.00
998 3 0.00
999 11 0.00
1000 9 0.00
1001 3 0.00
1002 14 0.00
1003 10 0.00
1004 1 0.00
1005 11 0.00
1006 4 0.00
1007 2 0.00
1008 8 0.00
1009 6 0.00
1012 1 0.00
1015 1 0.00
1017 13 0.00
1018 21 0.00
1019 9 0.00
1020 3 0.00
1021 10 0.00
1022 1 0.00
1024 338 0.03
1025 321 0.03
1026 372 0.04
1027 279 0.03
1028 204 0.02
1029 263 0.03
1030 472 0.05
1031 373 0.04
1032 319 0.03
1033 204 0.02
1034 219 0.02
1035 232 0.02
1036 333 0.03
1037 233 0.02
1038 254 0.03
1039 223 0.02
1040 207 0.02
1041 212 0.02
1042 194 0.02
1043 160 0.02
1044 219 0.02
1045 123 0.01
1046 98 0.01
1047 112 0.01
1048 105 0.01
1049 114 0.01
1050 117 0.01
1051 293 0.03
1052 533 0.06
1053 191 0.02
1054 559 0.06
1055 319 0.03
1056 596 0.06
1057 164 0.02
1058 106 0.01
1059 420 0.04
1060 272 0.03
1061 40 0.00
1062 37 0.00
1063 44 0.00
1064 49 0.01
1065 106 0.01
1066 58 0.01
1067 56 0.01
1068 43 0.00
1069 85 0.01
1070 35 0.00
1071 266 0.03
1072 33 0.00
1073 198 0.02
1074 44 0.00
1075 67 0.01
1076 32 0.00
1077 28 0.00
1078 201 0.02
1079 58 0.01
1080 44 0.00
1081 189 0.02
1082 55 0.01
1083 267 0.03
1084 18 0.00
1085 13 0.00
1086 4 0.00
1087 150 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:14867217 original size:873 final size:873
Alignment explanation
Indices: 14865319--14871001 Score: 7130
Period size: 873 Copynumber: 6.4 Consensus size: 873
14865309 ACCGTAAAAA
14865319 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
14865384 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACGTTCCATCCTATCGATCCATGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
14865449 TTGTGCAACCTATCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGC
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
14865514 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGATTGAGGGTTGCAGTAGTAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAGGAT
* * *
14865579 CGGCAGCACGCAGAGGGGGACCTGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
261 CGGCAGCACGCAGAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
14865644 AGCGCTCGCATGCTCATTCCATGGGTTGACCTAGGCATACGGAGTTGATTCCCAGTCAAAGATCA
326 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCA
* * * *
14865709 GACCAGACCCAGGGTTGCAGCAGCACATGCT-GGCTGGGACATGTGCT-GCGCCGCATTTTTCTT
391 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
14865772 TGTCGGCGGAAAACCATCG-TCGAGCATCGTCGGCGAGAACTTGGACCGACTGGCATTGGTCTGT
456 TGTCGG-GG--CACCATCGCTAGAGCATCG-CCG-GAGAACCT-GACCGAC-GACATTGGTGT-T
* * *
14865836 CCGGCGATCAGGGGGGCC-GAGGGTGT-CGCACAAAGATATTGCGATGGGTGCTGGTACTT-GCC
513 CCGGTGATCAGGGGGGCCGGGGGGTGTGCGCAC-ATGATA-TGCGATGGGTGCTGGTACTTGGCC
* *
14865898 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGC-TTTGAG
576 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
14865962 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTC-AAT-G
641 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGG
14866025 TCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAA
705 TCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
14866089 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTC-GAAC
770 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTTAAAAAATC-CAAAAC
* *
14866153 CGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTC
833 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
14866194 GTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
14866259 TGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCATCCTATCGATCCATGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
14866324 TTGCGTAACCCATCTCTCTGGCCGACGTATTGCCCGCCCGCCTGTCCGCTCATTTTGTCGGTTGG
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
14866389 CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAAACCAGATCAAGGGTTACAGCAGTAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAGGAT
* *
14866454 CGGCAGCACACAGAGGGGAACCCGGTCGATCACCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
261 CGGCAGCACGCAGAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
14866519 AACGCCCGCACGCTCATTCCATGGGCTGAGC-TAGGCATACGGAGTTGATTCCCAGTCAAAGATC
326 AGCGCCCGCACGCTCATTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCAAAGATC
* * * * * *
14866583 AGACCAGGCCGAGCGTTGCGGTAGCACATGCTGGGTTGGGGCATGTGCTGGTGCCGCATTTTTCT
390 AGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCT
* * * * * *
14866648 TTG-CTGGGGCACCATCGCTAGAGTATCACCGAAGAACTTGACCGGCGGCATTGGTGTTCCGGTG
455 TTGTC-GGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGACGACATTGGTGTTCCGGTG
14866712 ATCAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
519 ATCAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
14866777 GGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACA
584 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
14866842 GGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAAT
649 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
14866907 CTTGCACACTTCGACTTTTTAGCTGAATGTTTTTGTCCATTCCAACAAAAATACATGGATCACGT
714 CTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
14866972 CTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAATTTTTAAAAAATCCAAAACTGTAAAAAGTT
779 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTT
* * *
14867037 TCAAAAATCGTTAAAAATAGAAAAC-ATGTC
844 TTAAAAATCATGAAAAATAGAAAACGA-GTC
*
14867067 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
14867132 TGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
14867197 CTACGCACCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCC-CTACGCCCGCTCGTTTCGTCAGTTG
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGC-CCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
14867261 GCTTAGGCAAATGGAGTTCATTCCCAGTATAAGATCAAACC-GAATCGAGGGTTACGGCAACAGG
195 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ATCGAGGGTTACAGCAGCAGG
* * * * **
14867325 ATCCGCAGCATGCAGAGGGGGA-CCTGTCCGATTGCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
259 ATCGGCAGCACGCAGAGGGGAACCCGGT-CGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
14867389 CTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
323 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C
** * * *
14867454 ATAAGGAGTTCTTTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGTGGCAGTACATACTGGGCT
383 --AA--AG---------A-TC--AGA--CCA---GACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * *
14867519 CGGGCATATGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCATTGCCAGAGCATCACCGGAGAAC
427 CGGACATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCTAGAGCATCGCCGGAGAAC
* *
14867584 CTGACCGACGACATTGGTGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
492 CTGACCGACGACATTGGTGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGA
14867649 TGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
557 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
14867713 CCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGGG
622 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
14867778 GACATTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
687 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
** * * *
14867843 ATGGGAACAAAAATAAAAGGATCACATATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
752 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATT
* ** * **
14867908 TTT-AAAAATTCTGAACCCTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTC
816 TTTAAAAAATCCAAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
14867965 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
14868030 TGGCATTGGCATGTAGAAATATGAAGATGTGTCTAAACCCACCTACCATCCTATCGATCCATGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
14868095 TTGCGCAACCCGTCTCTCTGGCCGGCTTATTACCCACCCGCCCGCCCGCTCATTTCGTCGGTTGG
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
14868160 CTTAGGCATACGGATTTCATTCCTAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGCAGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAGGAT
* * * * * * *
14868225 CGGCAGCACGCAGAGTGGAAACCGATCGATCGCCGGCTTGAGCATCCCACCCCTCTGGCCAGCTG
261 CGGCAGCACGCAGAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
14868290 AGCGCCCGCACGCTCATTACATGGGTTGACTTAGGCATACGGAGTTGATTCCCGGTCTAAGATCA
326 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCA
* * * *
14868355 GGCCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAACATGTGCTGGTGCCGTATTTTTTTT
391 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
14868420 TGCCGGGGCACTATCGCTGGAGCATCGTCGGAGAACTTGACCGGCGACATTGGTGTTCCGGTGAT
456 TGTCGGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGACGACATTGGTGTTCCGGTGAT
14868485 CAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
521 CAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
14868550 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
586 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
14868615 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
651 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
14868680 TGTACACTTTGAGTTTTTACCTGAATTTTTTTGTGCAAG-CAAAAAACAATACAAGGATCATGTC
716 TGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTC
* * * **
14868744 TACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
780 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTT
* *
14868809 TGAAAATCATGAAGAATAGAAAACGAGTC
845 TAAAAATCATGAAAAATAGAAAACGAGTC
14868838 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
14868903 TGTTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCACGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** *
14868968 TTGCGCATCCCATCTCTCTGGTCGGCGTAGTACCCCGCCCGCCCGCTCACCCGCTCGTTTCATCG
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTA-TTGCCCGCCCGCCCG----CCCGCTCGTTTCGTCG
* * *
14869033 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-CCAGAGGGTCAC-GACA
191 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACAG-CA
* * * * * * * ** *
14869096 GTAGGATCGACAGCATGCAAAGGGCAACCCGGCCGATCCCCGGCTTGCGCATCGTGCCCCTCTGC
254 GCAGGATCGGCAGCACGCAGAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
14869161 CCGGCTGAGCACCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
319 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
* * *
14869226 AAGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAAACCAAGGGTTGCGGCAGCATATGCTG
382 ---C--A--AAG---------A-TC----A---GACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
14869291 GGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAG-GTCATCGTCGG
423 GGCTCGGACATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCTAGAG-CATCGCCGG
* * ** * * *
14869355 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATCATG
487 AGAACCTGACCGACGACATTGGTGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATA
*
14869420 TGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
552 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
14869485 ACACCCCCTTAATGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAA
617 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
14869550 ATGTGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATATTTT
682 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTT
* * * * *
14869615 TGTGCATTCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTGCTGAAA
747 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAA
* ** *
14869680 AAATTTTT-AAAAATCCAAAACCGTAAAAAGTTTCAAAAATTGTTAAAAATAGAAAAC-ATGTC
811 AAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA-GTC
14869742 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
14869807 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAGACCCACCGACCACCCTAACGATCCACGGC
66 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
14869872 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGG
131 TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *** * * * * ** * *
14869937 CTTAGGCATACAGAGTTCATTCTCAGTCTAAGATTTCATCAGACCAAGGTTTATGGCAGGAGGCT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAGGAT
** * * * * * * *
14870002 CGATAGCACGTAGAGGGGGACCAGG-CTGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGCT
261 CGGCAGCACGCAGAGGGGAACCCGGTC-GATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
14870066 GAGTGCCCGCGCGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
325 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATC
* * * *
14870131 GGACC-GAACTGAGGGTTGCGACAGCACATACTGGGCTCGGACATGTGCTGGTGCCGCATTTTTC
390 AGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTC
** * * * * * *
14870195 TTCATCGGGGAACCATTGCCAGAGCATTGCCGAAGAACCTGACCGGCGACATTGAG-GTTCCGGT
454 TTTGTCGGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGACGACATTG-GTGTTCCGGT
* * * * *
14870259 GATCGGGGGGGCCGGGGGGTGTGCGCACTTGATGTGCGATGGGTG-TGGTTACTTGACCCTTATG
518 GATCAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGG-TACTTGGCCCTTATA
* * *
14870323 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGTGCATTTGACATTTTA
582 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
14870388 CAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
647 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
14870453 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
712 ATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *** **
14870518 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAA
777 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCCAAAACC-GTAAAAA
*
14870583 GTTTTAAAAATTATGAAAAATAGAAAACGAGTC
841 GTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
14870616 AG-CTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAA
1 -GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
14870680 CTGGCATTGGCATGCAGAAATCTGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGG
65 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
14870745 CTTGCGCATCCCGTGTCTCTGGCCGACGTAGTGCCTGCCCGCCTGTCCGCCTGCTCGTTTCGTCT
130 CTTGCGCAACCCGTCTCTCTGGCCGGCGTA-T---TGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * *
14870810 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGC
191 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGC
* * * * * * *
14870875 AGGATCAGCAGCACATCATGA-GGG-ACTCGGCCGATCCCCGGCTTGCGCATCCGGCCCCTCTAG
256 AGGATCGGCAGCAC-GCA-GAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
14870938 CCGGCTGAGCGCCCGTATGCTCGTTTCCTGGGTTGACTTAGGCATAC-GACATTCATTCCCAGTC
319 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTC
14871002 TAAGCATACG
Statistics
Matches: 4185, Mismatches: 514, Indels: 215
0.85 0.10 0.04
Matches are distributed among these distances:
870 38 0.01
871 101 0.02
872 258 0.06
873 1191 0.28
874 262 0.06
875 392 0.09
876 18 0.00
877 25 0.01
878 342 0.08
879 7 0.00
880 8 0.00
881 1 0.00
882 2 0.00
883 1 0.00
887 3 0.00
889 2 0.00
890 3 0.00
891 2 0.00
892 2 0.00
893 1 0.00
894 4 0.00
896 3 0.00
897 3 0.00
898 577 0.14
899 345 0.08
900 4 0.00
901 1 0.00
903 14 0.00
904 559 0.13
905 16 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCAACCCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGCAGCAGGAT
CGGCAGCACGCAGAGGGGAACCCGGTCGATCACCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCA
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTT
TGTCGGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGACGACATTGGTGTTCCGGTGAT
CAGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTT
AAAAATCATGAAAAATAGAAAACGAGTC
Found at i:14867456 original size:26 final size:26
Alignment explanation
Indices: 14867426--14867478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14867416 GTTGACTTAG
*
14867426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
14867452 GCATAAGGAGTTCTTTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
14867478 G
1 G
14867479 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:14867877 original size:898 final size:892
Alignment explanation
Indices: 14865713--14874616 Score: 6774
Period size: 873 Copynumber: 9.8 Consensus size: 892
14865703 AGATCAGACC
* * * * *
14865713 AGACCCAGGGTTGCAGCAGCACATGCT-GGCT-GGGACATGTGCT-GCGCCGCATTTTTCTTTGT
1 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGG-CATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * *
14865775 CGGCGGAAAACCATCG-TCGAGCATCGTCGGCGAGAACTTGGACCGACTGGCATTGGTCTGTCCG
65 CGG-GG--CACCATCGCTAGAGCATCG-CCG-GAGAACCT-GACCGGC-GACATTGGTGT-TCCG
* * * * *
14865839 GCGATCAGGGGGGCC-GAGGGTGT-CGCACAAAGATATTGCGATGGGTGCTGGTACTT-GCCCTT
122 GTGATCGGGGGGGCCGGGGGGTGTGCGCAC-ATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTT
* *
14865901 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGC-TTTGAGATT
185 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
14865965 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTC-AAT-GTCA
250 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCA
14866028 CAAAATCTTGTACACTTCGACTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGA
314 CAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
14866092 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTC-GAACCGT
379 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTTAAAAAATC-CAAAACCGT
* ** * *
14866156 AAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTTCACGTGAAGG
442 AAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
14866221 CTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
507 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * * * *
14866286 TGTGCCAAAACCCACCTACCATCCTATCGATCCATGGCTTGCGTAACCCATCTCTCTGGCCGACG
572 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * *
14866351 TATTGCCCGCCCGC-CTGTCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
637 TAGTGCCCGCCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * ** * * *
14866415 TCAAAGATCAAACCAGATCAAGGGTTACAGCAGTAGGATCGGCAGCACACAGAGGGGAACCCGGT
702 TCTAAGATCAGACCA-ACCGAGGGTTACGGCAGCAGGATCCGCAGCATGCAGAGGGGGACCTGGC
* * * * * *
14866480 CGATCACCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTCCATGGGC
766 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* **
14866545 TGAGC-TAGGCATACGGAGTTGATTCCCAGTC--A--A-A--GA----T--CAG---ACCA-G
831 TGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTTCCCAGTCTAAGATG
* * * * * *
14866590 -G-CCGAGCGTTGCGGTAGCACATGCTGGGTTGGGGCATGTGCTGGTGCCGCATTTTTCTTTG-C
1 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
14866652 TGGGGCACCATCGCTAGAGTATCACCGAAGAACTTGACCGGCGGCATTGGTGTTCCGGTGATCAG
66 -GGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGATCGG
*
14866717 GGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
130 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
14866782 CTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
14866847 GCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGC
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
14866912 ACACTTCGACTTTTTAGCTGAATGTTTTTGTCCATTCCAACAAAAATACATGGATCACGTCTACC
325 ACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
14866977 AAGTTTGGGGCCAAAACTTCTTCCGAAAAATTTTTAAAAAATCCAAAACTGTAAAAAGTTTCAAA
390 AAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTTAAA
* * *
14867042 AATCGTTAAAAATAGAAAAC-ATGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
455 AATTGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
14867106 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACC
519 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
14867171 CACCTACCACCCTATCGATCCACGGCCTACGCACCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCC
584 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * *
14867236 -CTACGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAAATGGAGTTCATTCCCAGTATAAGATCAAA
649 GCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
14867300 CCGAATCGAGGGTTACGGCAACAGGATCCGCAGCATGCAGAGGGGGACCTGTCCGATTGCCGGCT
714 CC-AACCGAGGGTTACGGCAGCAGGATCCGCAGCATGCAGAGGGGGACCTGGCCGATCCCCGGCT
* *
14867365 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCAT
778 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
14867430 ACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCTTTCCCAGTCTAAGATTGG
843 ACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-TTTCCCAGTCTAAGA-T-G
* * * *
14867484 ATTGGACCGAGGGTTGTGGCAGTACATACTGGGCTCGGGCATATGCTGGTGCCGCATTTTGCTTC
1 A---GACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
14867549 GTCGGGGCACCATTGCCAGAGCATCACCGGAGAACCTGACCGACGACATTGGTGTTCCGGTGATC
63 GTCGGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGATC
14867614 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GC
128 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
14867678 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGT
193 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
14867743 TTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTTACAAAATCTT
258 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** * * *
14867808 GTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGGGAACAAAAATAAAAGGATCACATATA
323 GTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** *
14867873 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTT-AAAAATTCTGAACCCTAAAAAGTTTT
388 CCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTT
14867937 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
452 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
14868002 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGTCTAAA
517 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * * * *
14868067 CCCACCTACCATCCTATCGATCCATGGCTTGCGCAACCCGTCTCTCTGGCCGGCTTATTACCCAC
582 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
14868132 CCGC-CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGATTTCATTCCTAGTCTAAGATCA
647 CCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * ** ** *
14868196 GACCAAATCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGTGGAAACC-GATCGATCGCCG
712 GACC-AACCGAGGGTTACGGCAGCAGGATCCGCAGCATGCAGAG-GGGGACCTGGCCGATCCCCG
* * * * *
14868260 GCTTGAGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCATTACATGGGTTGACTTAGG
775 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * *
14868325 CATACGGAGTTGATTCCCGGTCTAAG-AT-C--AG--------G-C------C
840 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTTCCCAGTCTAAGATG
* ** * * * *
14868359 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAACATGTGCTGGTGCCGTATTTTTTTTTGCC
1 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
14868424 GGGGCACTATCGCTGGAGCATCGTCGGAGAACTTGACCGGCGACATTGGTGTTCCGGTGATCAGG
66 GGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGATCGGG
*
14868489 GGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
131 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
14868554 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
196 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
14868619 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
261 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * *
14868684 CACTTTGAGTTTTTACCTGAATTTTTTTGTGCAAG-CAAAAAACAATACAAGGATCATGTCTACC
326 CACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACC
* * * * ** *
14868748 AAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAA
390 AAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTTAAA
** *
14868813 AATCATGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
455 AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** *
14868878 TGTATGAATTTACAAGCCATAAAAATGTTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
520 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
14868943 ACCTACCACACTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTACCCCGCCC
585 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----GCCC
* * *
14869008 GCCCGCT-CACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
645 GCCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * ** *
14869072 CAGACCAGCCAGAGGGTCACGACAGTAGGAT-CGACAGCATGCAAAGGGCAACCCGGCCGATCCC
710 CAGACCAACC-GAGGGTTACGGCAGCAGGATCCG-CAGCATGCAGAGGGGGACCTGGCCGATCCC
** * * * *
14869136 CGGCTTGCGCATCGTGCCCCTCTGCCCGGCTGAGCACCTGCACGTTCGTTTCATGGGTTGACTTA
773 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
*
14869201 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATTGG
838 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT--TTCCCAGTCTAAGA-T-G
* * * * *
14869260 ACCAAACCAAGGGTTGCGGCAGCATATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC
1 ---AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * **
14869325 GTCGGGGCACCATCGCTAG-GTCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
63 GTCGGGGCACCATCGCTAGAG-CATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGAT
* *
14869389 CGGGGGGGCCGGGGGGTGTGCGCACATCATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGG
127 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
14869454 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTAGAGG
192 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
14869519 TTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGTGGACACTTTCTTCAAATGGTCACAAAATCT
257 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
14869584 TGTACACTTCGACTTTTTAGCTGAATATTTTTGTGCATTCCAACAAAAATAGAAGGATCACGTCT
322 TGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
14869649 ACCAAGTTTGGGGCCAAAACTTCTGCTGAAAAAATTTTT-AAAAATCCAAAACCGTAAAAAGTTT
387 ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTT
* *
14869713 CAAAAATTGTTAAAAATAGAAAAC-ATGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
451 TAAAAATTGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
**
14869777 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
515 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
14869842 GACCCACCGACCACCCTAACGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
580 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * *
14869907 GCCCGC-CCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGAT
645 GCCCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*** * * * * * * * * * * *
14869971 TTCATCAGACCAAGGTTTATGGCAGGAGGCT-CGATAGCACGTAGAGGGGGACCAGGCTGATCCC
710 CAGACCA-ACCGAGGGTTACGGCAGCAGGATCCG-CAGCATGCAGAGGGGGACCTGGCCGATCCC
* * * * * * *
14870035 CGACTTGCACATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCGCGCTCGTTTCGTGGGTTAACTTA
773 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
14870100 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA-------C---C------G
838 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTTCCCAGTCTAAGATG
* * * *
14870137 A-ACTGAGGGTTGCGACAGCACATACTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCATC
1 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
14870201 GGGGAACCATTGCCAGAGCATTGCCGAAGAACCTGACCGGCGACATTGAG-GTTCCGGTGATCGG
66 GGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGACATTG-GTGTTCCGGTGATCGG
* * *
14870265 GGGGGCCGGGGGGTGTGCGCACTTGATGTGCGATGGGTG-TGGTTACTTGACCCTTATGTTGGCC
130 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG-TACTTGGCCCTTATATTGGCC
* * *
14870329 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGTGCATTTGACATTTTACAGGTT
194 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
14870394 TGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
259 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
14870459 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
324 TACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *** **
14870524 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAAGTTTTA
389 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACC-GTAAAAAGTTTTA
* *
14870589 AAAATTATGAAAAATAGAAAACGAGTCAG-CTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGAC
453 AAAATTGTGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
14870653 CATTGTATGAATTTACAATCCATAAAACTGGCATTGGCATGCAGAAATCTGAAGATGTTCCTAAA
517 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
14870718 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGACGTAGTGCCTGC
582 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
14870783 CCGCCTGTCCGCCTGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
647 CCG-C--TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
14870848 TCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACAT-CATGA--GGGA-CTCGGCCGA
709 TCAGACCA-ACCGAGGGTTACGGCAGCAGGATCCGCAG--CATGCA-GAGGGGGACCT-GGCCGA
* * * * *
14870909 TCCCCGGCTTGCGCATCCGGCCCCTCTAGCCGGCTGAGCGCCCGTATGCTCGTTTCCTGGGTTGA
769 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
*
14870974 CTTAGGCATAC-GACATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTAA
834 CTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTT--TTCCCAGTCTAAGA--T--
*
14871038 CT
892 -G
* * * * ** ** **
14871040 AGACCGAGGGTTGCGGCAGCAGGAT--TGGTAGCAC--ACA-GAGGGGGACCCGACCGATCCTCA
1 AGACCGAGGGTTGCGGCAGCA-CATACTGG--GCTCGGGCATGTGCTGGTGCCG--C-AT--TTT
* ** * * * ** * ** * *
14871100 GCTTACGCATC-TTGC-CCCTCTGGCT-G-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-
58 TCTT-CG--TCGGGGCACCATC--GCTAGAGC--ATCG-CCGGA-GAACCTGAC--CGG-CGACA
** * * * ****** * * * * * *
14871160 TTAGGCATACAGAGTTAATTCCCAGTCTAAACATAC-GGAGTTCATTCCCAGTCTAAGATCG-GA
111 TT-GGTGTTCCG-G-TGA-T--C-GGGGGGGC---CGGGGGGT-GTGCGCA--C-ATGAT-GTG-
* * * ** * * *** * * ***** *
14871223 CCAGACCGAGG-GTTGCG-AC--AGCCC--ATGCTGG-GCTC-GGGCAT-GTGCTGGTGTC--GT
160 -C-GA-TG-GGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGA
**** ** * **** * ** ** * *** ** * *
14871277 A-TTTTTCTTCGTCGGGGCACCA-TTGCCAGAGCATCGCCGGAGAAGCTGACC-GGCGACATT-G
219 ACTCACACCCCCTTAAAG-AGCATTTG--AGA-TTTTACAGG-TTTGCTG-CCAGTAGCCATTAA
* * * * *** * **** *
14871338 GGTTTCTGGCAATCGGGGAGGC-CGGGGGGGTGTGCGCACATGATGTGTGA-TGGGTGCTGGT--
278 AGTGTCT-GAAAT-GGGGA--CAC-------TTTTTTCA-A--ATG-GTCACAAAAT-CTTGTAC
* *** *** *** * * * *
14871399 ACTTGGCG-CTTATATTGGC-CCCTTATCCCTCACCAAGCC-TCAAGAACTCACACCCCCTTAAA
327 ACTT--CGACTT-T-TTAGCTGAATT-TTTTTGTGCATGCCAACAA-AA---ATA----C--AAG
* * * * * * ** ** *
14871461 AACCATTTGAGATTTTA-CAGGTTTACTGCCAGTAGCCATTA-TAGTGTCTGAAATGGGGACACT
377 GATCA----CG--TCTACCAAG-TT--TG---G-GGCCAAAACTCCT-TCCGAAA-----A-A--
*** * * * **
14871524 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGATTTTGTGCATGCCA
420 TTTTT-AAAAAATC-CAAAA-C-CGTA-A---AAAG-TTTTA----AA--A-ATTGTG-A--AAA
* * * * * * ** ** *** * ** ** ** ** * *
14871589 ACAAAAATACAAG--GACCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAA
466 ATAGAAA-ACGAGTCG-TCTTG-CCATGAAACTTCACG-T-GAA-GGCTTAAGGGACCATTGTAT
* * ** * ** **** * * ** *
14871652 AAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCGTG-AAAAATAAAAAACGAGTCTTTGCCATGA
525 GAATTTAC-AAGCCATAAAAA-TGGC-ATTGGCATGCAGAAAT-ATGAA-GA---TGTGCC-T-A
* * * * * ** * ** * **** **
14871715 AACTTCACATGA--AGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCAT-TGG
580 AAC-CCACCT-ACCA-CCCT-A---TCGA-TCCACG-GCTTGC--G-CAT-CCCGTCTC-TCTGG
*** * * * * *
14871777 CACATAGAAATATAAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATC
631 C-C---G--GCGT--AG-TG--CCC--GCCC-GCT-CC-GCC---CG---CTC-G-TT-T-CGT-
* ** * * ** *** * * * * ** *
14871842 CTGTCTCTCTGGTCGGCATA--GTGCCCGCCCGCCCGCCT--GCTC-GATTC-GTCGATTGGCTT
669 CGGT-TGGCT--TAGGCATACGGAGTTCATTC-CCAGTCTAAGATCAGA-CCAACCGA--GGGTT
* * * **
14871901 A-GGCATACAGAGTTCATCGCCAATCTAAGATTGAACCGGATCGAGGGTTTTGGAAGGAGGATGG
727 ACGGCA-GCAG-GATC--CG-C-AGC----A-TG---C--A--GA--G----GG--GGA-CCT--
***** ** * * * ** *
14871965 GTAGCACGTAGAGGAGGACCCAGC-CGATCCCTGGCTTACGCATCCGGCC-CCTTTG-GCCGGCA
763 G--GC-CG-ATCCCCGG--CTTGCGC-ATCCC--GC---C-CCTCTGGCCGGCTGAGCGCCCGCA
* **** * * * * ** ** *
14872027 GAGC-CCCCGCACGCTCGTT-CCGT-GGGTTGACTTAG-GCATACGGCGTTCATTCCAGTCTAAG
815 -CGCTCGTTTCATG--GGTTGACTTAGGCAT-ACGGAGTTC--A-----TTC---CCAGTCTAAG
14872088 CATACGGAGTTATTCCCAGTCTAAGATTGG
866 CATACGGAGTT-TTCCCAGTCTAAGA-T-G
* * * * *
14872118 ACGGACCAAGGGTTGC-GCAGCACA-GCCGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCG
1 A--GACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * ** * * * * *
14872181 TCAGGGCACCATCG-TCGGAGCATTGCCAAAGAATCGGACCGGCGGCATTGGGGTTCCGATGATC
64 TCGGGGCACCATCGCT-AGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGATC
* *** * *
14872245 AGGAAAGCCGATGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGAACTTGGCCCTTATATTG
128 GGGGGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
14872310 GCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
191 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
14872375 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
256 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * * *
14872440 TTGTTCACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATAAAAGGATCACATC
321 TTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * ** * *
14872505 TACCAAGTTTGCGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAATGTTT
386 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTT
** * *
14872570 CCAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
451 TAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
14872635 CCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
516 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
14872700 ACCCACCTACCACCCTATCGATCAATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
581 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
*
14872765 CTCGTCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAA
646 --C--CCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * *
14872829 GAAT-GGACCAGATCGAGGGTTTTGGTAGGAGGAT-CGACAGCACGTAGAGGGGGACC-CGCCTA
707 G-ATCAGACCA-ACCGAGGGTTACGGCAGCAGGATCCG-CAGCATGCAGAGGGGGACCTGGCCGA
* * * * * *
14872891 TCCCCAGTTTGCGCATCCCACCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
769 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * *
14872956 CTTAGGCATACGGCGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAAC
834 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT--TTCCCAGTCTAAGAT-----
*
14873021 T
892 G
* * * * *
14873022 AGACCGAGGGTTGCGACAGCACATGCCGGGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
1 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * * * * *
14873087 GGTTCACCATCG-TCGGAGCATCGTCGAAGAACCTGACCGGTGGCATTAGG-GTTTCGAG-GATC
66 GGGGCACCATCGCT-AGAGCATCGCCGGAGAACCTGACCGGCGACATT-GGTGTTCCG-GTGATC
* * * **
14873149 GAGGGGGTCGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTTTCCCTTATATTGGC
128 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
14873214 CCCCTATCCTTCATCAATCCTCGAGAAGTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGT
193 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
14873278 TTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATTGTCACAAAATCTT
258 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
14873343 GTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTA
323 GTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * *
14873408 CCAAGTTTGGGGCCAAAAATCCTTCCGAAAGAA-TTTTAAAAAATCCTGAACCGCAAAAAGTTTC
388 CCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AATTTTTAAAAAATCCAAAACCGTAAAAAGTTTT
** * *
14873472 CGAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
452 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
14873537 CATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCGAAATATGAAGATGTGCCTAAA
517 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
14873602 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
582 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
*
14873667 CCGC-CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
647 CCGCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * * * * *
14873731 GACCGGACCAAGGGTTATAGTAGCAGGATCAGCACCACGCAGAGGGGGACCCGACCGATCCCCGG
712 GACC-AACCGAGGGTTACGGCAGCAGGATCCGCAGCATGCAGAGGGGGACCTGGCCGATCCCCGG
* * * * *
14873796 CTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCGGTACGCTCGTTTCGTGGGTTGACTTAGGC
776 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * ** *
14873861 ATACAGAG-TAATTCGCAGTCTAAGCATATAGAGATCATTCCCAGTCTAAGATCG
841 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-TTTCCCAGTCTAAGAT-G
* * * *
14873915 -GACCGGACTGGGGGTTGTC-GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTCC
1 AGACC-GA----GGGTTG-CGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * * * * * * **
14873978 TTCACCGGGGCACCATCG-TCGGAGCATCACCGGAGAACCTGACAGTCGGCATTGGGGTTCCGAC
60 TTCGTCGGGGCACCATCGCT-AGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGT
* * *
14874042 GATCGGGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGCTACTGGTACTTGGCCCTTATA
124 GATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
** * * * *
14874107 TTGATCCCCTATCCTTCATCAAACCTAGATAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTA
188 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
14874172 CAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
253 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * ** * * *
14874236 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATTTCAACAACAATATAAGTATCAC
318 ATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
14874301 GTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
383 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACCGTAAAAAG
* *
14874366 TATCT-AAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
448 T-TTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * **
14874430 GGGACCATTGTACGAATTTACAAGCCATAAAAACGGCATTGGCACACAGAAATATGAAGATGTGC
512 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * *
14874495 CTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCTCGCCCCTCTGGCCGGC----TG
577 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * *
14874556 --AGCAC-CT--GCACGCTCGTTTCG-CGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
642 CCCGCCCGCTCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
14874615 AG
706 AG
14874617 CATACGGAGT
Statistics
Matches: 6364, Mismatches: 1184, Indels: 945
0.75 0.14 0.11
Matches are distributed among these distances:
870 38 0.01
871 100 0.02
872 251 0.04
873 1193 0.19
874 262 0.04
875 32 0.01
876 15 0.00
877 36 0.01
878 343 0.05
879 6 0.00
880 11 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
888 4 0.00
889 2 0.00
890 49 0.01
891 3 0.00
892 9 0.00
893 4 0.00
894 5 0.00
896 4 0.00
897 242 0.04
898 1064 0.17
899 413 0.06
900 24 0.00
901 401 0.06
902 107 0.02
903 19 0.00
904 667 0.10
905 24 0.00
907 4 0.00
908 17 0.00
909 13 0.00
910 18 0.00
911 4 0.00
912 5 0.00
914 12 0.00
915 8 0.00
916 3 0.00
917 3 0.00
918 3 0.00
920 1 0.00
921 2 0.00
922 8 0.00
923 8 0.00
924 11 0.00
925 13 0.00
926 19 0.00
927 17 0.00
928 2 0.00
929 5 0.00
930 3 0.00
931 4 0.00
932 6 0.00
933 1 0.00
934 1 0.00
935 4 0.00
936 1 0.00
937 4 0.00
938 6 0.00
939 16 0.00
940 14 0.00
943 2 0.00
944 2 0.00
945 3 0.00
946 7 0.00
947 6 0.00
948 8 0.00
949 16 0.00
950 8 0.00
951 5 0.00
952 2 0.00
953 2 0.00
954 5 0.00
955 5 0.00
957 4 0.00
960 5 0.00
961 12 0.00
962 4 0.00
963 1 0.00
964 4 0.00
965 2 0.00
966 1 0.00
967 3 0.00
969 5 0.00
970 5 0.00
971 2 0.00
972 4 0.00
973 7 0.00
974 3 0.00
975 1 0.00
976 3 0.00
977 8 0.00
978 4 0.00
979 3 0.00
981 2 0.00
982 2 0.00
983 7 0.00
984 9 0.00
985 3 0.00
986 5 0.00
987 9 0.00
988 10 0.00
989 3 0.00
990 9 0.00
991 30 0.00
992 30 0.00
993 8 0.00
994 3 0.00
995 11 0.00
996 9 0.00
997 5 0.00
998 2 0.00
999 9 0.00
1000 7 0.00
1001 2 0.00
1002 2 0.00
1004 3 0.00
1005 3 0.00
1006 6 0.00
1007 2 0.00
1008 1 0.00
1009 3 0.00
1010 8 0.00
1011 4 0.00
1012 1 0.00
1013 3 0.00
1014 6 0.00
1015 4 0.00
1016 2 0.00
1017 1 0.00
1018 3 0.00
1019 2 0.00
1021 3 0.00
1022 2 0.00
1023 18 0.00
1024 340 0.05
1025 321 0.05
1026 373 0.06
1027 281 0.04
1028 204 0.03
1029 270 0.04
1030 476 0.07
1031 375 0.06
1032 323 0.05
1033 211 0.03
1034 234 0.04
1035 247 0.04
1036 338 0.05
1037 242 0.04
1038 255 0.04
1039 224 0.04
1040 207 0.03
1041 215 0.03
1042 195 0.03
1043 160 0.03
1044 231 0.04
1045 136 0.02
1046 105 0.02
1047 116 0.02
1048 107 0.02
1049 120 0.02
1050 117 0.02
1051 293 0.05
1052 536 0.08
1053 197 0.03
1054 560 0.09
1055 325 0.05
1056 598 0.09
1057 182 0.03
1058 124 0.02
1059 436 0.07
1060 280 0.04
1061 53 0.01
1062 47 0.01
1063 44 0.01
1064 52 0.01
1065 110 0.02
1066 61 0.01
1067 64 0.01
1068 54 0.01
1069 85 0.01
1070 39 0.01
1071 270 0.04
1072 50 0.01
1073 211 0.03
1074 63 0.01
1075 71 0.01
1076 32 0.01
1077 33 0.01
1078 204 0.03
1079 71 0.01
1080 63 0.01
1081 204 0.03
1082 76 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGACATTGGTGTTCCGGTGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCAAAACCGTAAAAAGTTTTAAAA
ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AACCGAGGGTTACGGCAGCAGGATCCGCAGCATGCAGAGGGGGACCTGGCCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTTTCCCAGTCTAAGATG
Found at i:14869232 original size:26 final size:26
Alignment explanation
Indices: 14869202--14869254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14869192 GTTGACTTAG
* *
14869202 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
14869228 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
14869254 G
1 G
14869255 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:14871132 original size:185 final size:185
Alignment explanation
Indices: 14870820--14871244 Score: 595
Period size: 185 Copynumber: 2.3 Consensus size: 185
14870810 GTTGGCTTAG
*
14870820 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * *
14870885 GCACATCATGAGGGACTCGGCCGATCCCCGGCTTGCGCATCCGGCCCCTCTAGCCGGCTGAGCGC
66 GCACATCATGAGGGACCCGACCGATCCCCAGCTTACGCATCCGGCCCCTCTAGCCGGCTGAGCGC
* * *
14870950 CCGTATGCTCGTTTCCTGGGTTGACTTAGGCATAC-GACATTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACAGA-ATTAATTCCCAGTCTAA
** * ** *
14871005 GCATACGGAGTTCATTCCCAGTCTAAGATCTAACTAGACCGAGGGTTGCGGCAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* ** * *
14871070 GCACA-CA-GAGGGGGACCCGACCGATCCTCAGCTTACGCATCTTGCCCCTCTGGCTGGCTGAGC
66 GCACATCATGA--GGGACCCGACCGATCCCCAGCTTACGCATCCGGCCCCTCTAGCCGGCTGAGC
* *
14871133 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAA
129 GCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACAGAATTAATTCCCAGTCTAA
* *
14871190 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
14871245 CCATGCTGGG
Statistics
Matches: 211, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
183 2 0.01
184 2 0.01
185 205 0.97
186 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
GCACATCATGAGGGACCCGACCGATCCCCAGCTTACGCATCCGGCCCCTCTAGCCGGCTGAGCGC
CCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACAGAATTAATTCCCAGTCTAA
Found at i:14871201 original size:26 final size:26
Alignment explanation
Indices: 14871165--14871215 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14871155 TTGACTTAGG
14871165 CATACAGAGTTAATTCCCAGTCTAAA
1 CATACAGAGTTAATTCCCAGTCTAAA
* *
14871191 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTAATTCCCAGTCTAA
14871216 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTAATTCCCAGTCTAAA
Found at i:14872091 original size:25 final size:25
Alignment explanation
Indices: 14872062--14872112 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
14872052 GTTGACTTAG
*
14872062 GCATACGGCGTTCATT-CCAGTCTAA
1 GCATACGGAGTT-ATTCCCAGTCTAA
14872087 GCATACGGAGTTATTCCCAGTCTAA
1 GCATACGGAGTTATTCCCAGTCTAA
14872112 G
1 G
14872113 ATTGGACGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTATTCCCAGTCTAA
Found at i:14872990 original size:26 final size:26
Alignment explanation
Indices: 14872961--14873013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14872951 GTTGACTTAG
*
14872961 GCATACGGCGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14872987 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14873013 G
1 G
14873014 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14873893 original size:25 final size:26
Alignment explanation
Indices: 14873859--14873910 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14873849 GTTGACTTAG
*
14873859 GCATACAGAG-TAATTCGCAGTCTAA
1 GCATACAGAGATAATTCCCAGTCTAA
* *
14873884 GCATATAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATAATTCCCAGTCTAA
14873910 G
1 G
14873911 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATAATTCCCAGTCTAA
Found at i:14874626 original size:26 final size:26
Alignment explanation
Indices: 14874590--14874642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14874580 GTTGACTTAG
14874590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14874616 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14874642 G
1 G
14874643 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14875200 original size:732 final size:731
Alignment explanation
Indices: 14873786--14875280 Score: 2350
Period size: 732 Copynumber: 2.0 Consensus size: 731
14873776 GGGACCCGAC
* * * *
14873786 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCGGTACGCTCGTTTCGTGGGT
1 CGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCGGCACGCTCGTTTCGCGGGT
* * *
14873851 TGACTTAGGCATACAGAGTAATTCGCAGTCTAAGCATATAGAGATCATTCCCAGTCTAAGATCGG
66 TGACTTAGGCATACAGAGTAATTCCCAGTCTAAGCATACAGAGATCATTCCCAGTCTAAGATCAG
* * * * *
14873916 ACCGGACTGGGGGTTGTCGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTCCTTC
131 ACCGAACCGAGGGTTGTCGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTCCTTC
* *
14873981 ACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGTCGGCATTGGGGTTCCGACGATC
196 ACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACAGGCGGCATTGGGGTTCCGACGATC
*
14874046 GGGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGCTACTGGTACTTGGCCCTTATATTGA
261 GAGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGCTACTGGTACTTGGCCCTTATATTGA
* * * *
14874111 TCCCCTATCCTTCATCAAACCTAGATAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGG
326 GCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
14874176 TTTGCTGCCAGTAGCCATTAAAGTGCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
391 TTTGCTGCCAGTAGCCATTAAAGTGCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTT
* * * * * * *
14874241 GTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATTTCAACAACAATATAAGTATCACGTCTA
456 GTACAATTCGAGTTTTTAGCTGAATTGTTTTCTGCATGTCAAAAAAAATACAAGGATCACATCTA
* * *
14874306 CCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTATCT
521 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTATCA
** *
14874371 AAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
586 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACC
*
14874436 ATTGTACGAATTTACAAGCCATAAAAACGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
651 ATTGTAAGAATTTACAAGCCATAAAAACGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
14874501 CCACCTACCACCCTAT
716 CCACCTACCACCCTAT
* * *
14874517 CGATCCACGGCCTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGCGGGT
1 CGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCGGCACGCTCGTTTCGCGGGT
* * * * *
14874582 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
66 TGACTTAGGCATACAGAG-TAATTCCCAGTCTAAGCATACAGAGATCATTCCCAGTCTAAGATCA
* * *
14874647 GATCGAAACCGAGGGTTG-CGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
130 GACCG-AACCGAGGGTTGTC-GCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTCC
*
14874711 TTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACG
193 TTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACAGGCGGCATTGGGGTTCCGACG
* * *
14874776 ATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
258 ATCGAGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGCTACTGGTACTTGGCCCTTATAT
* *
14874840 TG-GCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTAC
323 TGAGCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
14874904 AGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAA
388 AGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAA
* *
14874969 TCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTCAAAAAAAATACAAGGATCACA
452 TCTTGTACAATTCGAGTTTTTAGCTGAATTGTTTTCTGCATGTCAAAAAAAATACAAGGATCACA
*
14875034 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACC-CTAAAAAG
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGC-AAAAAG
*
14875098 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAG
581 TATCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAG
* * * *
14875163 GGACCATTGTAAGAATTTACAGGCCATAAAAACGGCATTGGCATACGGAAATATGAAGATGTGTC
646 GGACCATTGTAAGAATTTACAAGCCATAAAAACGGCATTGGCACACAGAAATATGAAGATGTGCC
14875228 TAAACCCACCTACCACCCTAT
711 TAAACCCACCTACCACCCTAT
* * *
14875249 CGATCCGCGGCTTGCGCATCCCGTCTCTCTGG
1 CGATCCACGGCTTGCGCATCCCGCCCCTCTGG
14875281 TCAGCGTAGT
Statistics
Matches: 694, Mismatches: 65, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
731 159 0.23
732 413 0.60
733 122 0.18
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (731 bp):
CGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCGGCACGCTCGTTTCGCGGGT
TGACTTAGGCATACAGAGTAATTCCCAGTCTAAGCATACAGAGATCATTCCCAGTCTAAGATCAG
ACCGAACCGAGGGTTGTCGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTCCTTC
ACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACAGGCGGCATTGGGGTTCCGACGATC
GAGGGGGCCGGGGGGGTGTGCGAACATGATGTGCGATGGCTACTGGTACTTGGCCCTTATATTGA
GCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTT
GTACAATTCGAGTTTTTAGCTGAATTGTTTTCTGCATGTCAAAAAAAATACAAGGATCACATCTA
CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTATCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACC
ATTGTAAGAATTTACAAGCCATAAAAACGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTAT
Found at i:14875521 original size:26 final size:26
Alignment explanation
Indices: 14875492--14875544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14875482 GTTGACTTAG
*
14875492 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14875518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14875544 G
1 G
14875545 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.