Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 95 of 190
Found at i:15033957 original size:26 final size:26
Alignment explanation
Indices: 15033928--15033980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15033918 CTGATTTGAT
*
15033928 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15033954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15033980 C
1 C
15033981 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15034867 original size:26 final size:26
Alignment explanation
Indices: 15034831--15034883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15034821 CTGGTCTGAT
* *
15034831 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15034857 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15034883 C
1 C
15034884 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15035203 original size:903 final size:893
Alignment explanation
Indices: 15032324--15039068 Score: 8832
Period size: 903 Copynumber: 7.7 Consensus size: 893
15032314 ACTCCATACG
* * * * * *
15032324 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATGAAACGAGTGGGCAGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGCGGGCGGGCGGG
* * * * *
15032389 TGGGCAATACGTCGGCCAGAAAGACAGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15032454 TTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15032519 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * **
15032584 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGTGTTTTCACCCGAAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC-AAACTTGGTA
* * * * * *
15032649 CACATGATCCCTGTATGTTTGTTGGCATGGACAAAAATATTCAGCTAAAAACCTTGAAGTGTACA
324 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGTACA
**
15032714 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATGCTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15032779 CTTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
15032844 CCAATATAAGGGACAAGTACCAGCACCCATCACACATCATGTGCGCATACCCCCCGGCCCCCCTG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-G
* *
15032909 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA-G---CG-ATGGTGCCCCGACGAAGAAA
582 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTATGCTCCGCATGGTGCCCCGGCGAAGAAA
* * * * * *
15032969 AATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTAGTCCGATCT
647 AATGCGGCACCAACACATGCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* *
15033034 TAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
711 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * * * * * *
15033099 GAAATGAGCGTGTGGGTGCTCAGCCTACCACAGGGGCAGTATGGGCTAGCCGGGGATCGACCGGG
776 GAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGATCGGG
* * ** * * * * *
15033164 GCCCGCTCTATGTGCTGCCGATCTTGCTGTCGCATCCCTCGGTCCGATCTGAT
841 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
15033217 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCTACAAAACGAGCGAGCGTGTGCGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCGGG
* * * *
15033282 CGGGCACTACATCGGTCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15033347 TTAGGCTCATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAGTGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15033412 TCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
15033477 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTCGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG-GCCCAAACTTGGTA
* * * *
15033542 GACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAA
324 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15033607 GATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * * *
15033672 CTGTTAAATCTCAAATGATATTTAAGGAGGTCTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * *
15033737 CAATATAAGGGATAAGTACCAGCACCCATCACACATTATGTGCGCACA----AC--CCCCCCGAT
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * *
15033796 CGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAA
584 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--T-ATGCTCC-G-CATGGTGCCCCGGCGAA
* * * *
15033861 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATTTGCTGTCGCAACCCTCGGTCTGATTTG
643 GAAAAATGCGGCACCAACACATGCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
15033926 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
707 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * ** * * * * * *
15033991 CCACAAAACGACCGTATGGGTGCTCAGCCGGCCAGAGGGGCGGGGTGCGCAAGCCAGGGATTGAT
772 CCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGAT
* * **
15034056 CGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTAGTCAAAT
837 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
15034113 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
* * * *
15034178 CGGACACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGCGAATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15034243 TTAGGCACATCTTCATATTTCTTCTTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15034308 TTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
*
15034373 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTA
*
15034438 GACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
324 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
15034503 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
15034568 CTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGCC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
15034633 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGA
* * * *
15034698 TCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGCGATGCTCCGACAATGGTTCCCTGGGGA
583 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CT---ATGCTCCG-C-ATGGTGCCCCGGCGA
* * * **
15034763 AGAAAAATGCGACACCAACACATGCCCGAGCCTAGCAGGTGCTGCCGCAACCTTTTGTCTGGTCT
642 AGAAAAATGCGGCACCAACACATGCCCGAGCC-AGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
* * *
15034828 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
706 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15034893 ACCATGAAACGAGCGTGAGGATGCTCATCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGG
771 CCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGA
* * * * * *
15034958 TCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTACCGTATCCCTCGGTCCGGTCTGAT
836 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
15035016 CTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
* * * * *
15035081 CGGGCACTACGCCGACCAGAGAGACGGGATGTGCAAGCCATGGTTCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15035146 TTATGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGCCTTGTAAATTCATATAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15035211 TCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTT
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
15035276 AATCTTTTTACGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCAAACTTGGTA
*
15035341 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
324 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15035406 GATTTTTTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15035471 CTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGCTCAT-GAGGTTTGATGAGGGATAGGGGG
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGG
15035535 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCGGCCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCCCC
* * *
15035600 GATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCTACGATGCTCCGGCGATGGTGCCCCGAC
581 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CT---ATGCTCC-GC-ATGGTGCCCCGGC
* * *
15035665 GAAGAAAAATGCAGCAACAACACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-G-C--G-
640 GAAGAAAAATGCGGCACCAACACATGCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
*
15035723 --G----T---CT-GG--T---C-C-G-AT-CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTC
704 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * * * *
15035769 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGTGGCGGGATGCGCAAGCCGAGAATC
769 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATC
* * ** * * * *
15035834 GACCGGGTCCCACTCTGCGTGCTTTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGAT
834 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * * * *
15035894 CTAACATTGGGAATGAACTCCGTATGCCAAAGCCTACCGACGAAATGAGCAGGCAGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
** * *
15035959 CGGGCACTACACCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15036024 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15036089 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
15036154 AAACTTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCTCCAAACATAGT
260 AAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-CCAAACTTGGT
15036218 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
15036283 AGATTTTGTGACCATTTGAAGAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15036347 CCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15036412 CCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCACCGGCCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCCCC
*
15036477 GATCG-CTGGAACCCCAATGCCGCCGGTCAGG-----T-T-CT-C-C--GGT--------GAAGA
581 GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCTATGCTCCGCATGGTGCCCCGGCGAAGA
** * *
15036522 AAAATGCAACACCAACACAAGCCCGAGCCAGCATGTGCTGCCACAA-CC-C--TC--G---G-TC
645 AAAATGCGGCACCAACACATGCCCGAGCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
15036577 -----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
710 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
15036626 TGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGGGGTC-GGATGCGCAAGCTGGGGATCGATCG
775 TGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGG-CAGGATGCGCAAGCCGGGGATCGATCG
* ** * *
15036690 GGTCCCCCTCTACGTGCTTTCGATCCTGCTACCGCAACCCTGGGTCTGGTCTGAT
839 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
15036745 CTAAGATTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAATGAGC-G-GGG-GGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
* * * *
15036807 AGGCACTACGCCGGCCAAAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** ** **
15036872 TAGGCACATCTAAATATTTCTGTGTGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
15036937 CCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* **
15037002 AACTTTTTGCGGTTCGGGATTTTTTAAAACTTTTTCGAAAGGAGTTTTGGCTGTAAACTTGGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-CCAAACTTGGTAG
* *
15037067 ACATGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
325 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15037132 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15037197 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCG
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* **
15037262 AATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACTCCCCCCAACCCCCCCG
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCC-GGCCCCCCG
* * * * *
15037327 ATCGCCGGAACCCCAAT-AC-TAC---CA----CT-TA-G----G--T--T-TCCCAGCGAAGAG
582 ATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCTATGCTCCGCATGGTGCCCCGGCGAAGAA
* * *
15037372 AAATGCGGCACCAATACATGCGCGAGGCCAGCATGTGCTGCCGCAACCCTCGGT-TCGGTCTGAG
646 AAATGCGGCACCAACACATGCCCGA-GCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCTGAT
*
15037436 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
709 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
15037501 ATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCTGCAAGATACGTAAGCCGGGGATCGATCG
774 ATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGATCG
* * * * **
15037566 GGTCCCCCTCTGCGTGCTACCGATCTTGCTGCTGCAACCCTCGGTTTGGTCCAAT
839 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
15037621 CTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAATGA-------GCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
*
15037679 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15037744 TAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
15037809 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
15037874 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCGTAAACTTGGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC-CAAACTTGGTAG
**
15037939 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
15038004 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACT
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
15038069 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGCGAAAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15038134 AATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACTCCCCTTGACCCCCCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGCCCCCCGA
* * *
15038199 TCATCGGAACCCCAATG-C--C-ATC-GG---T-TA-G----G--T--T-CCCCAGCGAAGAAAA
583 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTATGCTCCGCATGGTGCCCCGGCGAAGAAAA
* * * * * * *
15038245 ATGCGGCACCAACACATGCGCGAGGCCAGAATGTGCTGCCACAACCCTTGGTTTGGTCCGAGCTT
648 ATGCGGCACCAACACATGCCCGA-GCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTT
*
15038310 AGACTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
712 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* * *
15038375 AAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGGTCGGGT
777 AAACGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * **
15038440 CCCCCTCTGCGTGCTACCGATCTTGCTGCTGCAACCCTCGGTTTTGTCCAAT
842 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
15038492 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A----TGAGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
15038550 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15038615 TAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
15038680 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGACTTTCGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
*
15038745 AACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTT-GAAAAGGAGTTTTGGCCGTAAACTTGGT
261 AACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCG-AAAGGAGTTTTGGCC-CAAACTTGGT
* *
15038809 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15038874 AGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15038939 CCTGTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
15039004 CCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCA-ACTCCCCTGACCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCG
15039068 A
582 A
15039069 GCGTGCGGGC
Statistics
Matches: 5266, Mismatches: 480, Indels: 235
0.88 0.08 0.04
Matches are distributed among these distances:
842 1 0.00
845 3 0.00
846 1 0.00
847 332 0.06
848 150 0.03
849 50 0.01
850 26 0.00
851 211 0.04
852 32 0.01
854 1 0.00
856 1 0.00
859 1 0.00
860 4 0.00
863 1 0.00
865 2 0.00
866 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
870 15 0.00
871 559 0.11
872 746 0.14
874 4 0.00
875 3 0.00
876 181 0.03
877 188 0.04
878 511 0.10
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
885 35 0.01
886 7 0.00
887 2 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 178 0.03
893 330 0.06
894 4 0.00
895 1 0.00
896 744 0.14
897 1 0.00
898 1 0.00
900 2 0.00
901 2 0.00
902 8 0.00
903 800 0.15
904 104 0.02
905 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTTGGTAGA
CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGTCGGTCAGGTTCTCTATGCTCCGCATGGTGCCCCGGCGAAGAAAAATG
CGGCACCAACACATGCCCGAGCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
GAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:15037464 original size:26 final size:26
Alignment explanation
Indices: 15037435--15037488 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15037425 TTCGGTCTGA
15037435 GCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCTGTAT
15037461 GCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCTGTAT
15037487 GC
1 GC
15037489 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCTGTAT
Found at i:15038359 original size:26 final size:26
Alignment explanation
Indices: 15038306--15038359 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15038296 TTTGGTCCGA
*
15038306 GCTTAGACTGGGAATGAACTCTGCAT
1 GCTTAGACTGGGAATGAACTCCGCAT
*
15038332 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGCAT
15038358 GC
1 GC
15038360 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGCAT
Found at i:15038626 original size:871 final size:870
Alignment explanation
Indices: 15036586--15039068 Score: 4106
Period size: 872 Copynumber: 2.8 Consensus size: 870
15036576 CCGGTCTGAT
*
15036586 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * **
15036651 CGACCGGAGGGGTC-GGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTTTCGATC
66 CGACCAGAGCGG-CAAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * ** * * *
15036715 CTGCTACCGCAACCCTGGGTCTGGTCTGATCTAAGATTGGGAATGAACTCTGTATGCCTAAGCCA
130 TTGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
15036780 ACTGATGAAATGAGCGGGGGGGCGGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGTAAGCC
195 ACCGACGAAATGAGC----GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
** * ** *
15036845 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTAAATATTTCTGTGTGCCAATGCCATTT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTT
** * *
15036910 TTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
15036975 TCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAACTTTTTCGA
386 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAA
* * *
15037040 AAGGAGTTTTGGCTGTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAA
451 AAGGAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
15037105 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
15037170 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
15037235 TCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
15037300 GTGCGCACACTCCCCCCAACCCCCCCGATCGCCGGAACCCCAATACTACCACTTAGGTTTCCCAG
711 GTGCGCACACT-CCCCTGA-CCCCCCGATCACCGGAACCCCAATACCACCACTTAGGTTCCCCAG
* * * *
15037365 CGAAGAGAAATGCGGCACCAATACATGCGCGAGGCCAGCATGTGCTGCCGCAACCCTCGGTTCGG
774 CGAAGAAAAATGCGGCACCAACACATGCGCGAGGCCAGAATGTGCTGCCACAACCCTCGGTTCGG
* *
15037430 TCTGAGCTTAGACTGGGAATGAACTCTGTATG
839 TCCGAGCTTAGACTGGGAATGAACTCTGCATG
*
15037462 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
15037527 CGACCAGAGCTGCAAGATACGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
*
15037592 TGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
131 TGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15037657 CCGACGAAATGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
196 CCGACGAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
15037722 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATG
15037787 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
15037852 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGA
391 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGA
*
15037917 GTTTTGGCCGTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
456 GTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15037982 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
521 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15038047 TAATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
586 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
15038112 GTTTGATGAGCGAAAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCG
651 GTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * **
15038177 CACACTCCCCTTGACCCCCCGATCATCGGAACCCCAATGCCATCGGTTAGGTTCCCCAGCGAAGA
716 CACACTCCCC-TGACCCCCCGATCACCGGAACCCCAATACCACCACTTAGGTTCCCCAGCGAAGA
* *
15038242 AAAATGCGGCACCAACACATGCGCGAGGCCAGAATGTGCTGCCACAACCCTTGGTTTGGTCCGAG
780 AAAATGCGGCACCAACACATGCGCGAGGCCAGAATGTGCTGCCACAACCCTCGGTTCGGTCCGAG
15038307 CTTAGACTGGGAATGAACTCTGCATG
845 CTTAGACTGGGAATGAACTCTGCATG
15038333 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
*
15038398 CGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCT
66 CGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
*
15038463 TGCTGCTGCAACCCTCGGTTTTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15038528 CCGACAAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
196 CCGACGAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
15038593 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATG
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATG
15038658 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
15038723 TTCTATTTTTCATGACTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGAAAAGG
391 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCAAAAGG
*
15038788 AGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
15038853 GCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
15038918 TTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
15038983 GGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGC
650 GGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
15039048 GCA-ACTCCCCTGACCCCCCGA
715 GCACACTCCCCTGACCCCCCGA
15039069 GCGTGCGGGC
Statistics
Matches: 1508, Mismatches: 96, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
870 11 0.01
871 564 0.37
872 750 0.50
875 1 0.00
876 182 0.12
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (870 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
TGCTGCTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGA
GTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACTCCCCTGACCCCCCGATCACCGGAACCCCAATACCACCACTTAGGTTCCCCAGCGAAGAA
AAATGCGGCACCAACACATGCGCGAGGCCAGAATGTGCTGCCACAACCCTCGGTTCGGTCCGAGC
TTAGACTGGGAATGAACTCTGCATG
Found at i:15039719 original size:695 final size:689
Alignment explanation
Indices: 15038378--15039764 Score: 2089
Period size: 695 Copynumber: 2.0 Consensus size: 689
15038368 ACCCATGAAA
* * * *
15038378 CGAGCGTGCGGGTGCTCAGCCGACCAGAGCGGCAAGATGCGTAAGCCGGGGATCGGTCGGGTCCC
1 CGAGCGTGCGGGCGATCAGCCGACAAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCCC
* ** *** **
15038443 CCTCTGCGTGCTACCGATCTTGCTGCTGCAACCCTCGGTTTTGTCCAATCTTAGACTGGGAATGA
66 CCTCTGCGTGCTACCGATCCTGCTGCTGCAAAACTCGGTCCGGTCCAATCTTAGACTAAGAATGA
* * *
15038508 ACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
131 ACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* *
15038573 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
196 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
15038638 ATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
261 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
* *
15038703 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGACTTTCGAAACTTTTTGCGGTTCGGGATTTT
326 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAACTTTTTGCGGTTCGAGATTTT
* **
15038768 TTAAAAATTTTTTGAAAAGGAGTTTTGGCCGTAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
391 TTAAAAATTTTTTGAAAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * * *
15038833 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAA
456 GGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAA
*
15038898 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTA
521 GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTA
* * * *
15038963 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
586 AAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
15039028 ACCCACCGCACATCATGTGCGCA-ACTCCCCTGACCCCC
651 ACCAACCGCACATCATGTGCGCACACCCCCCGGACCCCC
* * *
15039066 CGAGCGTGCGGGCGATCAGCC-AGCAAGAGGGGCAGGATGCGTAAGCTGGGGATCGATCGGGTCC
1 CGAGCGTGCGGGCGATCAGCCGA-CAAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCC
* * **
15039130 CCGTCTGCGTGCTACCGATCCTGCT-ATCGCAAAACTCGGTCCGGTCTGATCTTAGACTAAGAAT
65 CCCTCTGCGTGCTACCGATCCTGCTGCT-GCAAAACTCGGTCCGGTCCAATCTTAGACTAAGAAT
* * * *
15039194 GAACTCTGTATGCCTAAGCCAACCAATGAAACGAGCGAGCGAGCGGTCGGGCGGTCACTATGCCG
129 GAACTCCGTATGCCTAAGCCAACCAA-CAAA--A-CGAGC--G-GG-CGGGCGGGCACTACGCCG
15039259 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
186 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
15039324 ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTC
251 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
15039389 ACATGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGT
316 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAACTTTTTGCGGT
* *
15039454 TCGAGATTTTTTAAAATTTTTTTG-TAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTG
381 TCGAGATTTTTTAAAAATTTTTTGAAAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
15039518 TATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTTCAAGATTTTCTGACCA
446 TATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCTGACCA
* * *
15039583 TTTGAAAAAAGTGTCCCCATTCCAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTGA
511 TTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCA
*
15039648 AATGCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCC
576 AATGCTCTTAAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCC
* * *
15039713 AAGTACCAGTACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
641 AAGTACCAGCACCAACCGCACATCATGTGCGCACACCCCCCGGACCCCC
15039762 CGA
1 CGA
15039765 TCGTTGGAAC
Statistics
Matches: 625, Mismatches: 63, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
687 2 0.00
688 129 0.21
689 3 0.00
691 1 0.00
692 4 0.01
694 1 0.00
695 249 0.40
696 236 0.38
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (689 bp):
CGAGCGTGCGGGCGATCAGCCGACAAGAGCGGCAAGATGCGTAAGCCGGGGATCGATCGGGTCCC
CCTCTGCGTGCTACCGATCCTGCTGCTGCAAAACTCGGTCCGGTCCAATCTTAGACTAAGAATGA
ACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAACTTTTTGCGGTTCGAGATTTT
TTAAAAATTTTTTGAAAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
GGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAA
GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTA
AAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACCAGC
ACCAACCGCACATCATGTGCGCACACCCCCCGGACCCCC
Found at i:15040365 original size:880 final size:875
Alignment explanation
Indices: 15039066--15040803 Score: 2663
Period size: 880 Copynumber: 2.0 Consensus size: 875
15039056 CCTGACCCCC
* * * *
15039066 CGAGCGTGCGGGCGATCAGCCAGCAAGAGGGGCAGGATGCGTAAGCTGGGGATCGATCGGGTCCC
1 CGAGCGTGCGGGCGATCAGCCAGCAAGAGGGGCAGGATGCGCAAGCCGGGAATCGATCGGGTACC
15039131 CGTCTGCGTGCTACCGATCCTGCTATCGCAAAACTCGGTCCGGTCTGATCTTAGACTAAGAATGA
66 CGTCTGCGTGCTACCGATCCTGCTATCGCAAAACTCGGTCCGGTCTGATCTTAGACTAAGAATGA
** * * * *
15039196 ACTCTGTATGCCTAAGCCAACCAATGAAACGAGCGAGCGAGCGGTCGGGCGGTCACTATGCCGGC
131 ACTCCATATGCCTAAGCCAACCAACGAAACGAGCGAGCGAGCGGGCGGGCGGTCACTACGCCGAC
15039261 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
196 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
15039326 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCAC
261 ATTTCTACGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
15039391 ATGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTC
326 ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTC
* * *
15039456 GAGATTTTTTAAAATTTTTTTGTAAGGAGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
391 GAGATTTTTTAAAATTTTTTCGGAAGGAGTGTTGGCCCCAAACCTGGTAGACGTGATCCTTGTAT
* * *
15039521 TTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTTCAAGATTTTCTGACCATTT
456 TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCAGACCATTT
* *
15039586 GAAAAAAGTGTCCCCATTCCAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTGAAAT
521 GAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
15039651 GCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAG
586 GCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAG
* * * * *
15039716 TACCAGTACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTTGGAACCCTAAT
651 TACCAGCACCAACCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * *
15039781 -GTCATCGGTCAGGTTCTCCGGTGATGCTCCGATGATTGTGCCCCGACGAAGAAAAATGTGGCAC
716 AG-C-T-GGTCAGGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCAC
*
15039845 CAACACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCGGCCCAATCCGATCTTAGACTGGGA
778 CAACACATGCCCGAGCCCAGCATGTACTGCCGCAACCCCCGGCCCAATCCGATCTTAGACTGGGA
15039910 ATGAACTCCGTATGCCTAAGTCAACCCATGAAA
843 ATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * *
15039943 CGAGCGTGCGGGTGCTCTGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGAATCGATCGGGTAAC
1 CGAGCGTGCGGGCGATCAGCCAGCAAGAGGGGCAGGATGCGCAAGCCGGGAATCGATCGGGT-AC
* * * ** * * *
15040008 CC-TCTGCGTGTTGCCGATCCTGCTATCGTAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATG
65 CCGTCTGCGTGCTACCGATCCTGCTATCGCAAAACTCGGTCCGGTCTGATCTTAGACTAAGAATG
* * *
15040072 AACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGCGGGCAGG-CACTACG
130 AACTCCATATGCCTAAGCCAACCAACGAAACGAGCGAGCGAGC--G-GGCGGGC-GGTCACTACG
*
15040136 CCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
191 CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
15040201 TTCATATTTCTACGTGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCC
256 TTCATATTTCTACGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
15040266 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTGATGATTTTTGAAACTTTTTGA
321 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA
* *
15040331 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCT
386 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTGTTGGCCCCAAACCTGGTAGACGTGATCCT
* * *
15040396 TGTATTTTTGTTGGCATGCACACAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGAGAC
451 TGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCAGAC
* *
15040461 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCT
516 CATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
15040526 CAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
581 CAAATGCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGG
* * *
15040591 CCAAGTGCCAGCACCCACCACACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACC
646 CCAAGTACCAGCACCAACCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
* **
15040656 CCAATACGCTGGTCAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGTTGAAGAAAAATGCGG
711 CCAATA-GCTGGTCAGGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * ** * *
15040721 CACCAACTCATGCCTGAGCCCAGCATGTGCTGCCGCAACCCCCGGTCCGGTCTGATCTTAGATTG
775 CACCAACACATGCCCGAGCCCAGCATGTACTGCCGCAACCCCCGGCCCAATCCGATCTTAGACTG
*
15040786 GGAATGAACTCTGTATGC
840 GGAATGAACTCCGTATGC
15040804 TTAGACTGGG
Statistics
Matches: 775, Mismatches: 79, Indels: 12
0.89 0.09 0.01
Matches are distributed among these distances:
877 144 0.19
878 3 0.00
879 122 0.16
880 502 0.65
881 3 0.00
882 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
CGAGCGTGCGGGCGATCAGCCAGCAAGAGGGGCAGGATGCGCAAGCCGGGAATCGATCGGGTACC
CGTCTGCGTGCTACCGATCCTGCTATCGCAAAACTCGGTCCGGTCTGATCTTAGACTAAGAATGA
ACTCCATATGCCTAAGCCAACCAACGAAACGAGCGAGCGAGCGGGCGGGCGGTCACTACGCCGAC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
ATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTC
GAGATTTTTTAAAATTTTTTCGGAAGGAGTGTTGGCCCCAAACCTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTCAGACCATTT
GAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAG
TACCAGCACCAACCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
AGCTGGTCAGGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCGACGAAGAAAAATGCGGCACCAA
CACATGCCCGAGCCCAGCATGTACTGCCGCAACCCCCGGCCCAATCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCATGAAA
Found at i:15041073 original size:185 final size:185
Alignment explanation
Indices: 15040770--15041173 Score: 571
Period size: 185 Copynumber: 2.2 Consensus size: 185
15040760 CCCCGGTCCG
* * * *
15040770 GTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATCAACTTCGTTTGCCTAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAG
* *
15040835 TCAACCCACGAAACGAGTGTGCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
66 TCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
15040900 TAGGTCGGGTCCCCCTCTGTATGCTACCGAGGCTGCTATCGCAACCCTCAATCTA
131 TAGGTCGGGTCCCCCTCTGTATGCTACCGAGGCTGCTATCGCAACCCTCAATCTA
* * *
15040955 GTCTGATGTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAG
**
15041020 TCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGA
66 TCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * ** * ** **
15041085 TCGGTCGGGTCCCCCTCTACGTA--CTACCGA-TCTTGCTGCCACAACCCTCGGTCCG
131 TAGGTCGGGTCCCCCTCT--GTATGCTACCGAGGC-TGCTATCGCAACCCTCAATCTA
*
15041140 GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15041174 CTAAGGCAAT
Statistics
Matches: 193, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
184 1 0.01
185 189 0.98
187 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (185 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAG
TCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
TAGGTCGGGTCCCCCTCTGTATGCTACCGAGGCTGCTATCGCAACCCTCAATCTA
Found at i:15041903 original size:26 final size:26
Alignment explanation
Indices: 15041874--15041929 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15041864 CCAGTCCGAT
**
15041874 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAACCAACAT-CGTATG
15041900 CTTAGACTGGGAACCAACATCGTATG
1 CTTAGACTGGGAACCAACATCGTATG
15041926 CTTA
1 CTTA
15041930 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACCAACATCGTATG
Found at i:15042088 original size:26 final size:26
Alignment explanation
Indices: 15042059--15042111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15042049 ATGGTCCGAT
*
15042059 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15042085 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15042111 C
1 C
15042112 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15042193 original size:185 final size:185
Alignment explanation
Indices: 15041847--15042270 Score: 582
Period size: 185 Copynumber: 2.3 Consensus size: 185
15041837 CCAGCATGTG
* ***
15041847 CTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTACCGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
15041912 ACCAACATCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAAGGG
66 ACCAACATCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGG
* * *
15041977 CGAGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTGCTGTCGATGCTC
131 CGAGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTACTGTCGATCCTA
* *
15042032 CTGCCGCAACCCGT-GGTATGGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGG
1 CTACCGCAACCC-TCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
** * * *
15042096 AATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
65 AACCAACATCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGG
* * * ** * **
15042161 GTGGGATGCGCAAGCCAGGG-TTTGATCGGGTCCCCCTCTGTGTACTGTCGATCCTA
130 GCGAGATGCGCAAGCCGGGGATCAG-CCGGGTCCCCCTCTACGTACTGTCGATCCTA
* *
15042217 CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CTACCGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
15042271 CTAAGGCAAC
Statistics
Matches: 208, Mismatches: 28, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
184 3 0.01
185 204 0.98
186 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (185 bp):
CTACCGCAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ACCAACATCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGG
CGAGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTCTACGTACTGTCGATCCTA
Found at i:15044761 original size:26 final size:26
Alignment explanation
Indices: 15044725--15044777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15044715 CTGATCCGAT
* *
15044725 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
15044751 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
15044777 C
1 C
15044778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:15045592 original size:896 final size:897
Alignment explanation
Indices: 15042051--15047178 Score: 6927
Period size: 896 Copynumber: 5.7 Consensus size: 897
15042041 CCCGTGGTAT
* * *
15042051 GGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
15042116 GTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCAGGG
66 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
15042181 TTTGATCGGGTCCCCCTCTGTGTACTGTCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCT
131 ATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCT
*
15042246 TAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGCGGGCGGGCGGTTG
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC----G
* * * * *
15042311 GGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTAGATCAATAGGGTGGTTGGTGGGTTT
257 GGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15042376 AGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
322 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
15042441 CCTTAAGCCTTCACATGAAGTTTCATGGTAAGACGACTCGTTTTCTGTTTTTCATGATTTTCAAA
387 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
* * * *
15042506 ACTTTTTACGGTTCAAGATTTTTTAAAATCTTTTCGGATGGAGTTTTGGCCCCAAACTTTGTAGA
452 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15042571 CGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
517 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15042636 TTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
582 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15042701 GTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCA
647 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15042766 GTATAAAGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGTCCCCCCGATCG
712 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * *
15042831 TCGAAACCCCAATG-TCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGGTGAA
777 TCGGAACCCCAATGCT-GTC-GGTCAGGTTCTCCGGTGATGCTCCGACGATGGT-GCCCGGCGAA
* * *
15042894 GAAAAATGCGGCACCAACACATGCCCGAGCGCAGCATGTGCT-TC-CGTAACCCTTGATCC
839 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCAC--AACCCTCGATCC
* * * * * *
15042953 GGTCTGATCTTCGATTAGGAATGAACTCCATATGCTTAGACTGGGAATGAGCTCTGTATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
15043018 GTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGAGGCGCAAGCCGGGG
66 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * ** * * * ** ** *
15043083 ATCGGTCGGGTCCACCTCTGCGTGCTGCCAATCTTGCTGCCGTAACCCTCGGTCCAGTCCAATCT
131 ATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCT
* * *
15043148 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGA----GCTGGTGGGCGGGCA
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * *
15043209 CTACGTCGGCCAGAGAGAC-AGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
261 CTATGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
15043273 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
325 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
15043338 CAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
390 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
** ** * *
15043403 TTTTGTGGTTTGGGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
455 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
** * * * *
15043467 GATAATTTTATTTTTGTTAGCATGCACAAAAAATTTCAGCTAAAAACTTGAAGTGTACAAGATTT
520 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
15043532 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
585 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
15043597 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
650 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
15043662 TAAGGACCAAGTACCAGCACCCATCGCATATCATGTGCGCGCACCCCCCGGCCCCACCGATCGCC
715 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTC
* * * *
15043727 GGAACCCCAATG-TCATCGGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGACGAAGAA
779 GGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCGGCGAAGAA
* * * * *
15043791 AAATACGGCGCCAGCACATGCCCGAGCCCAGCATTTGCTGCCGCAA-CC-C--T-C
842 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCC
*
15043842 -G---G-TC-----C-----A-G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
15043886 GTCAACACATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAAGGGCGGGTTGCGCAAGCCGGGG
66 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * ** *
15043951 ATCGA-CTAGGTTCCCCTCTGCCTACTATCGATCTTTCTGCTGCAACCCTCTGTCTGGTCCGATC
131 ATCGATC-GGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATC
* ** * *
15044015 TTAGACTGGGAATGAACT-CGTATGCCAAAAACAACCGACAAAACGAGCGGGCGGGCGGGCGAGC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* * * *
15044079 ACTAAGCCGGCCAGAGATACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
260 ACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* ** *
15044144 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGATTTGTAAATTCATATAATGGTCCCT
325 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * ** **
15044209 TCAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCCAAACT
390 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACT
* * *
15044274 TTCTACAGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGCGTTTT-GCCCCAAACTTGGTAGACG
455 TTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
15044337 TGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAACTGTACAGGATT
519 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
15044402 TGGCGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
584 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
15044467 AAAATCTCAATTGCTCTTTAAAGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
649 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
15044532 ATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCTCGGCCCCCCGATCGCC
714 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* * * *
15044597 GAAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCTGGCGAAGAAA
779 GGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC-GGCGAAGAAA
* * * * * *
15044662 AATGTGACCCCAGCACATGCCCGAGCCTAGCATGTGCTGTCACAACCCTCGGTCT
843 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCC
* * *
15044717 GATCCGATCTTATACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * *
15044782 GTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGTTGGATGCACGAGCCGGGG
66 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *
15044847 ATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCAATCT
131 ATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCT
* * *
15044912 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGG-GGGCGGGCGGGCA
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* * * * *
15044976 CTATGTCGTCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGCGTGGTAGGTTGGTTTAGGC
261 CTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
15045041 ACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTT
326 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
15045106 AAGCCTTCACGTGAAGTTTCATTGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
391 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTT
* * *
15045171 TTTACGGTTCATGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
456 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
15045236 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTAT
521 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
15045301 GTAACCAATTGAATATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
586 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
15045366 AATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG-TTGATTAGGGATAAGGGGCCAATAT
651 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
15045430 AAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCTAATCGTCG
716 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCG
*
15045495 GAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCCGGCAAAGAAAA
780 GAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCGGCGAAGAAAA
* *
15045559 ATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC-AGTCC
844 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGA-TCC
** *
15045613 GGTCAAATCTTAGACTGGGAATGAACTCCGA-ATGCTTAGACTGGGAATGAACTCGGTATGCCTA
1 GGTCCGATCTTAGACTGGGAATGAACTCC-ATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
15045677 AGTCAACCCATAAAACGAGCGTGCGGGCGCTTTA-TCGACCAAAGGGGCAGGATGCGCAAGCCGG
65 AGTCAACCCATGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * ** * * * *
15045741 GGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
129 GGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGAT
* * *
15045806 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACTAAACGAGCATGCAGGCGGGTGGG
194 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGG
* * * *
15045871 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGAGTGGTACGTGGGT
255 CGGGCACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15045936 TTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
320 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
15046001 TCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCACT-ATTTCT
385 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTT
* * * *
15046065 AAAACTTTTTGCGGTGCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
449 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15046130 AGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
514 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15046195 AGATTTTGTGACTATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
579 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
** *
15046260 CAAGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
644 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
15046324 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
709 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCG
* * * *
15046389 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCTCGAC
773 ATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CC-CGGC
* * * * * * * *
15046454 AAAGAAAAATGCGGCACCAGCACATGCCCAATCCCAGCACGTGCTGTCGCAACCTTTGATCT
836 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCC
** * *
15046516 GGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
15046581 GTCAACCCACGAAACGAGGGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGG
66 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * *
15046646 ATCGGTCGGGTCCCCCTCTTCATGCTATCGATTGTGCTACCACAACCCTCGGTCTGTTCCGATCA
131 ATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCT
* * *
15046711 TAGACTGGGAATGAACTCCGTATCCCTATGCCAATCGACGAAACGAGCAGGCTGGCAGGCAGGCG
196 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGC--G--GGCG
* *
15046776 GGCGGGCACTATGTCGGCCAGAGAGAC-AGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
253 GGCGGGCACTATGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
15046840 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCGTACAA
317 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
15046905 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTT
382 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
15046970 TTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTG
447 TTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
15047035 GTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTA
512 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
15047100 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGGCACTTTAATGGCTACTGGCAGCA
577 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
15047165 AACCTGTAAAATCT
642 AACCTGTAAAATCT
15047179 TCGTATGCTT
Statistics
Matches: 3700, Mismatches: 454, Indels: 138
0.86 0.11 0.03
Matches are distributed among these distances:
867 24 0.01
868 152 0.04
869 5 0.00
870 102 0.03
871 452 0.12
872 17 0.00
873 1 0.00
874 2 0.00
879 1 0.00
880 2 0.00
884 2 0.00
885 2 0.00
888 1 0.00
889 1 0.00
890 2 0.00
891 1 0.00
893 268 0.07
894 302 0.08
895 4 0.00
896 710 0.19
897 255 0.07
898 9 0.00
900 35 0.01
901 480 0.13
902 229 0.06
903 267 0.07
904 1 0.00
905 1 0.00
906 1 0.00
907 369 0.10
908 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
ATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
CTATGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGG
AACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCGGCGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCC
Found at i:15046555 original size:26 final size:26
Alignment explanation
Indices: 15046524--15046576 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15046514 CTGGTATGAT
*
15046524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15046550 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
15046576 C
1 C
15046577 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15047933 original size:26 final size:26
Alignment explanation
Indices: 15047904--15047956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15047894 CCGGTCCGAT
15047904 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15047930 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15047956 C
1 C
15047957 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15049681 original size:26 final size:26
Alignment explanation
Indices: 15049641--15049693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15049631 CCGATCTGAT
15049641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15049667 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15049693 C
1 C
15049694 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15051447 original size:27 final size:28
Alignment explanation
Indices: 15051406--15051459 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
15051396 CGGTCCAATC
15051406 TTAGACTGGGAATGAACT-TCTGTATGCT
1 TTAGACTGGGAATGAACTCT-TGTATGCT
*
15051434 TTAG-CTGGGGATGAACTCTTGTATGC
1 TTAGACTGGGAATGAACTCTTGTATGC
15051460 CTAAGTCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (28 bp):
TTAGACTGGGAATGAACTCTTGTATGCT
Found at i:15052353 original size:26 final size:26
Alignment explanation
Indices: 15052302--15052354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15052292 CCGGTCCGAT
*
15052302 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15052328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15052354 C
1 C
15052355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15053236 original size:26 final size:26
Alignment explanation
Indices: 15053200--15053252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15053190 CTGGTCCGAT
*
15053200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15053226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15053252 C
1 C
15053253 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15053951 original size:894 final size:892
Alignment explanation
Indices: 15049050--15056010 Score: 8575
Period size: 895 Copynumber: 7.8 Consensus size: 892
15049040 GTGGTAAGAT
* * *
15049050 GGTTTAGGCACATCTTCATTTTTTTCTGCATGCCAATGCC-TTTTTACGGATTGTAAATTCATAC
1 GGTTTAGGCACATCTTCA--TATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
15049114 AATGGTCCCTTAATGCCTTCACGTGAAAGTTTCAATGGCAAGACGACTCGTTTTCTATTTTTCAC
63 AATGGTCCCTTAA-GCCTTCACGTG-AAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** * *
15049179 AATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCAA
125 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAA
* * * * *
15049243 ACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAGAAACTCAA
190 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGA
*
15049308 AGTGTACAACATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
254 AGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
15049373 AGCAACAAACTTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
318 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
15049438 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCC-
383 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * *
15049500 -CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCTACGACGGTA
448 GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTG
** * *
15049564 CCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTG
513 CCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
15049629 GCCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCTGTATGC
578 G-CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15049694 CTAAGTCAACCCATGAAACGAGCGTGCGGGGACGCTCAACCAGCCAGAGGGGCGGGATACGCAAG
642 CTAAGTCAACCCACGAAACGAGCGTGC-GGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * * * * * *
15049759 TCGGGGATCGACCGGTTCCCCTTCTTCATGCTG-TATATTCTGCTGCCGCAACCCTCGGTCTGGC
705 CCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCA-ATCCTGCTGTCGCAACCCTTGATCTGGT
* * * * **
15049823 CCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAATGAGTGGGCGAGCGG
769 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGT--G-G-GCGG
* * * *
15049888 GCGGGCACTATGCCGGCTAGAGAGACGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTA
830 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15049951 GGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
15050016 TGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGGAAGACGACTAGTTTTCTATTTTTCATGATTT
65 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* *
15050081 TTGAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTAGCCCCAAACTTG
130 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* *
15050146 GTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGCA
195 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
15050211 CAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
260 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
15050276 AACCTGTAAAATCTGAAATGCTCTTTAAGGGGGCGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
325 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
15050341 GACCAATATAAGGGCCAAGTACCATCACCTATCACACATCATGTGCGCACACCCCCCGGCCCCCC
390 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
15050406 GATCGCCAGAACCCCAATGCCG-CTAGTCAGGTTATCCGACGATGCTCCGGTGATGGTGCCCCGA
455 GATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC-A
* * * *
15050470 G-GAAGAAAAATGTGGCACCAACACATGCCCGAACCCAGCATGTGCTGCTGCAACCCT-------
518 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGG
* *
15050527 T--G------GTCT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGT
583 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
15050574 CAACCCACGAAACGAGCATGCGGGCACTCAGTCGGCCAGAGGGGCGAGATTCGCAAGTCGAGGAT
648 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
15050639 CGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGTCGAAACCCTCGATCTGATCTGATCTTA
713 CGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTGATCTGGTCCGATCTTA
* * *
15050704 GACTAGGATTGAACTCTGTATGCCTAAGCCAACCGACGAAAC--GTGCAGGCAGGTAGGAAAGCG
778 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTG--GGC-----GG---GCG
* * ** * * *
15050767 GGCACTGCGTCGGCCAGAGAGACGGCTTGTGCAAGTCGTGGATTGATAGGGTGGTAGGTG
833 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
15050827 GGTTTAGTCACATCTTCATATTTCTACATGCCAATTCCATTTTTATGGCTTGTAAATACATACAA
1 GGTTTAGGCACATCTTCATATTTCT-GATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
15050892 TAGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
65 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
15050957 TTGAAACTTTTTGA-GGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
130 TTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
* * *
15051021 GGTAGACGTGATCCTTGTATTTTTATTGGCATGCA-AAAAAACATTCAGCTAAAAACTCGATGTG
194 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTG
* * **
15051085 TACAAGATTTTGTGATCATTTG-AAAAAGATGTCCCTATTTCAGACACTTTAATGGCTAAAGGCA
258 TACAAGATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
15051149 GGCAAACCTATAAAATCT--AATGCTCTTTAAGGGGGCGTG-GTT-TCAAGGTTTGATGATGGAT
322 -GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
15051210 AGGGGGCCAATATAAAGGCCAAAGTA-CGGCATCCCATACGCACATAACACGTGCGCAGCACCCC
386 AGGGGGCCAATATAAGGGCC-AAGTACCAGCA-CCCAT-CGCACAT--CATGTGCGCA-CACCCC
** * * *
15051274 TTGG-CCCACGATCGTCGGAACCGTCCAGTGCCGTCGGTCAGGTTCT-CG--G-TG-T--G--G-
445 CCGGCCCCCCGATCGCCGGAACC--CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGA
** * * * ** *
15051328 -CCT--CCGA-CGAAGAAAAATAC-GTACC-G-ACATGCTCCGAGCAAAGCAT-TGGTGCCTGCA
508 TGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTGCTGCC-GC-
* * *
15051385 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCTGTATGCTTTAG-CTGGGGATGAA
570 AACCCTCGG-CCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGC-TTAGACTGGGAATGAA
* * * * *
15051449 CTCTTGTATGCCTAAGTC-ACACACGAAACGAGTGTGCGGGTGCTCAGCTGG-CAGAGGGGCGGG
632 CTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
** * ** *
15051512 ATGCATAAGCCGGGGATCGA-CTGGGTCCCCCTCTACGTGCTGCCAATCCTGCTACCGTAACCC-
696 ATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCT
* * * ** *
15051575 TCAGTCCGGTCCAATCTTAGACTTTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAAC
760 TGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-CAA-
* * *
15051640 AT--GCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGG
822 GTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
15051703 TAGGTC
887 TAGGTG
*
15051709 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAA
1 GGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
15051774 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
65 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * * * *
15051839 TTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGCAATTTTAGCCCTAAACATG
130 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * * *
15051904 GTAGACATGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAACTTAAAACTCGAAGTGTA
195 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * ** * *
15051969 CAACACTTTGTGACCATTTGAAAAATTTGTCCCCATTGCAGACACTTTAATGGCTACTAGCAGCA
260 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15052034 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGCGTTCTCGAGGTTTGATGAGGGGTAGGA
325 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
15052099 GGCCAATATAAGGGCTAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCTCGGCCGC
390 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCC-C
* * * * * **
15052164 CCTGATCGTCGGAACCCTAATGCCGCCGTTCAGGTTCTCCGGTGATGCTCCTG-TGATGGTGCCC
452 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GATGATGGTGCCC
** ** * * *
15052228 CAATGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCCGTAAGCCTCGGTC
516 CAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-C
* *
15052293 CGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
580 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
15052358 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCACCCGGCCAGAGTGGCGGGATGCTCAAGCCGGG
645 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * ** * * * * *
15052423 GATC-AGCTGGGTCCCCCTCTTCATGCTGCTGATCCTGCT-TCTGCATCCCTCGGTCTGATCTGA
710 GATCGATC-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTC-GCAACCCTTGATCTGGTCCGA
* * * * *
15052486 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAACGGGTAGGCAGGCGA
773 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA---GTGGGCGGGCGG
* * * *
15052551 GCACTACGCCGGCCAGAGAGACAGGATACGCAAGTCGTGGATAGATAGGGTGGTAGGTG
834 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15052610 GGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTTTAAATTCACACA
1 GGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
15052674 ATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
64 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * ** * * * * *
15052739 TTCGAAACTTTTTGCGATTCGATATTTTTTAAAATTTTTTTGGAAGAATTTTTGGCGCCAAACTT
129 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
* * * * *
15052804 GCTAGCCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGTAGCGT
194 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
15052869 ACAAGATTTTGTGACCATTTAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCGGT
259 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
15052933 GAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGG
324 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
15052998 GGGCCAA-ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCC
389 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCC
* * * * ** *
15053062 CCCGATCGTCGGAACCCCAATGTCATCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCC
452 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC
* * * *
15053127 AGCGAAGAAAAAAGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTTGGCCT
517 AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCC-
*
15053192 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
581 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * * *
15053257 GTCAACCCACGAAAAGAGCGTACGGGTGCTCAGCCGGTTAGAGGGGCAGGATACGCAAGCAGGGG
646 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * *
15053322 ATCGATCAGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTTGATCCGATCTGATCT
711 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTGATCTGGTCCGATCT
* *
15053387 TAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGCACTAT
776 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGCACTAC
* * *
15053452 GCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATGGGGTGGTTGGTG
841 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15053504 GGTTTAGGCACATCTTCATATTTCTGATTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTCTGA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
15053569 TGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTT
65 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
15053634 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTCTATCCCCAAACTTG
130 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * * *
15053699 GCAGACATGATCCTTGTATTTTTTTTGGCATGGC-CAAAAAATTTCAGCTGAAAACACGAAGTGT
195 GTAGACATGATCCTTGTATTTTTTTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
15053763 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGACTACTGGCAGC
259 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
15053828 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGCGATAGG
324 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
15053893 GGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCA-GTTGCGCACACCCCCCGGCCCC
389 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACCCCCCGG-CCC
* * *
15053957 CCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC
452 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC
* *
15054022 AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCT
517 AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CC
* * *
15054087 GATTCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
581 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** ** **
15054152 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCTGGAGGGGCAAGATATGCAAGCCGGGG
646 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * *
15054217 ATCGATCGAGTCTCCCTCTGTGTCCTGCCACTCCTACTG-CTGCAACCTTTGGTTTGGTCCGATC
711 ATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTC-GCAACCCTTGATCTGGTCCGATC
* * * *
15054281 TTAGACTGGGAATGAACTCCG-ATGCCTAAGCCAACCGACAAAACGAGCGGGTGGGCGGGCACTA
775 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGCACTA
* * * *
15054345 TGCCGGCCAGAGACACGGGATGCGCAAGCCATGGATCGATACGGTGGTAGGTG
840 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15054398 GGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACA
1 GGTTTAGGCACATCTTCATATTTCTGA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
15054462 ATTGTCCCTTAAGCCTTCACGTGAGGTTTACCA--GCAAGACGACTCATTTTTCTATTTTTCATG
64 ATGGTCCCTTAAGCCTTCACGTGAAGTTT--CATGGCAAGACGACTC-GTTTTCTATTTTTCATG
* *
15054525 ATTTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTT-GACCCCAA
126 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAG-CCCCAA
* ** *
15054589 ACTTGGTAAACGCGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
190 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
15054654 GTGTAAAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAG
255 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
15054719 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
320 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
**
15054784 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTACACACCCCCCGGC
385 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* ** * * *
15054849 CCCCCGATCGCCGAAACCCCAACACCGACGGTCAGGTTCTCCGACGACGCTTCGA-GATGGTG-C
450 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCC
* * * *
15054912 CCTGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGG
515 CCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
15054977 CCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATAAACTCTGTATGCC
579 -CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** ** ** ** *
15055042 TAAGTCAACCCACAAAACGAGTGT-TTGGCATTCAATCGGTTAGAGGGGCGGGATGCGCAAGGCG
643 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * *
15055106 GGGATC-AGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGTCGTAACCC-TCAGTCCGGTCA
708 GGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTGA-TCTGGTCC
* ** *
15055169 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGTGGGCAGGCGGGC
771 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGC
* * * * * *
15055234 ACTACGCTGGACAGAGAGACGAGATGTGCAAGTCGTGGTTCGATAGGGTGGTAGGTG
836 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
15055291 GGTTTTGGCACATCTTCATATTTCTGCGTGCCAATG-AATTTTTATGGCTTGTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTCTG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
15055355 TGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTT-ACGATTT
65 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * *
15055419 TTTAAA-TTTTTACGGTTCGAGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTGG
130 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * *
15055483 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTATAAACTCGAAGTGTA
195 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
15055548 CAAGATTTTGTGACAATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCA
260 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
15055613 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
325 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * *
15055678 CACCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCAAGTGCGCACACCCCCCGGTCCCCC
390 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
* * * *
15055743 CGATCACCGGAACACCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCCATGATGGGGCACCC-
454 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGC-CCCA
* *
15055807 GCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
518 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-CCG
** * *
15055872 GTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-ACTCCATTTGCCTAAG
582 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
15055936 TCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
647 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
*
15056001 TCGATAGGGT
712 TCGATCGGGT
15056011 GGTAGGTGGG
Statistics
Matches: 5241, Mismatches: 668, Indels: 312
0.84 0.11 0.05
Matches are distributed among these distances:
862 11 0.00
863 12 0.00
864 10 0.00
865 11 0.00
866 2 0.00
868 4 0.00
869 1 0.00
870 3 0.00
872 120 0.02
873 42 0.01
874 62 0.01
875 43 0.01
876 337 0.06
877 40 0.01
878 10 0.00
879 18 0.00
880 6 0.00
881 29 0.01
882 350 0.07
883 38 0.01
884 31 0.01
885 41 0.01
886 2 0.00
887 1 0.00
889 294 0.06
890 207 0.04
891 203 0.04
892 178 0.03
893 261 0.05
894 561 0.11
895 729 0.14
896 254 0.05
897 281 0.05
898 379 0.07
899 93 0.02
900 243 0.05
901 334 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GGTTTAGGCACATCTTCATATTTCTGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGG
TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCAGCG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTGATCTGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGCGGGCGGGCACTACGCCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
Found at i:15054131 original size:26 final size:26
Alignment explanation
Indices: 15054095--15054147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054085 CTGATTCGAT
15054095 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15054121 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15054147 C
1 C
15054148 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15055017 original size:26 final size:26
Alignment explanation
Indices: 15054988--15055038 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054978 CCGGTCCGAT
*
15054988 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATAAACTCCGTATA
*
15055014 CTTAGACTGGGAATAAACTCTGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
15055039 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATA
Found at i:15056640 original size:26 final size:26
Alignment explanation
Indices: 15056611--15056663 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15056601 CCGATCCTAT
*
15056611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15056637 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15056663 C
1 C
15056664 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15059666 original size:872 final size:872
Alignment explanation
Indices: 15057972--15062565 Score: 6632
Period size: 872 Copynumber: 5.3 Consensus size: 872
15057962 AATTTTTTCA
*
15057972 ATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAGATTT
1 ATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15058037 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTA
65 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTA
* * * *
15058102 AAATGTCAAATGCTCTTTAAGGGGTTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGAGCCAATA
130 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * *
15058167 TAAGGGCCAAGTACTAGTACCCATCGTACATCATGTGCGCACACCCCCCGGCCTCCTCGATCGTC
195 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCC
* * * * * * *
15058232 GGAACCCTAATGCCATCGGTTAAGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCGACAAAGAAA
259 GGAACCCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * ** * *
15058297 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCTTCGGTCCGGTCTGATCT
324 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCT
* *
15058362 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCG
389 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
15058427 GCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
454 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * *
15058492 CTGCCACAACCCTTGGTCGGGTCCAATGTTAGACT-GGAATGAACTCTGTATGCTTAAGTCGACC
519 CTGCCACAACCCTCGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACC
* *
15058556 GACGAAACGAGCGGGCGGGCGGGCGGACACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTG
584 GACGAAATGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTG
* **
15058621 TATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAACACCATTTTTA
649 TATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
** * * *
15058686 CAGCTTGTAAATTCATACAATGGTCTCTTAAGCATTCACGTGAAGTTGCATGCCAAGACGACTCG
714 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCG
15058751 TTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
779 TTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
* *
15058816 GATTTTTAGCCCCAAACTTGGTAGACATG
844 GATTTTTGGCCCCAAACTTGGTAGACGTG
* *
15058845 ATCCTTGTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
1 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
15058910 GTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
* *
15058975 AATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
131 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
15059040 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCTCCCCCCCGATTGCCGG
196 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGG
* *
15059105 AACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGAGGAAGAAAAA
261 AACCCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* *
15059170 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATTGCAACCCTCGGTCTGGTCCGATCTTA
326 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTA
* * * ** *
15059235 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAAGCGCTCAGCCGAC
391 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
15059300 CAGAGGGGCGGTATGCGCAAGTCGGGGATCGACCGGGTCCCCCTTTGCATGCTGCCGATCCTGCT
456 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * *
15059365 GCCACAACCCTCGGTTGGGTCCAAAGTTAGACTGGGAATGAACTCTGTATGCCTAAGTCGACCGA
521 GCCACAACCCTCGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCGA
* *
15059430 CGTAACGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTGTA
586 CGAAATGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTGTA
* * *
15059495 TCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTAATG
651 TCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
* * *
15059560 GCTTGTAAATTCATCCAATGGTCTCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTTGTT
716 GCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
15059625 TTCTATTTTTTACGATTTTAAAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
781 TTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
*
15059690 TTTTTGGCCCCAAACTTGGTAGACATG
846 TTTTTGGCCCCAAACTTGGTAGACGTG
*
15059717 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
1 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
15059782 GTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTATAA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
15059847 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
131 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
15059912 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCACCCCCCGATTGCCG
196 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCCGATCGCCG
* *
15059977 GAAACCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAA
260 GAACCCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * *
15060042 ATGCGGCACCAGAACATGCCCGAGCCCAGCATGTGCTGTCCCAACCCTCAGTCTGGTTTGATCTT
325 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTT
* * * **
15060107 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCAAGCGCTCAGCCGG
390 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
15060172 CCAGAGGGGCGGTATGCGCAAGCCGGGGATTG-CCGGGTCCCCCTTTGCGTGCTACCGATCCTGC
455 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
*
15060236 TGCCACAACCCTTGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCG
520 TGCCACAACCCTCGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCG
* *
15060301 ATGAAATGAGCGAGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTGT
585 ACGAAATGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTGT
15060366 ATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
650 ATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
* * *
15060431 GGCTTCTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTGATGGCAAGACGACTCAT
715 GGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
15060496 TTTTTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGATGG
780 TTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGG
*
15060561 AGTTTTGGCCCCAAACTTGGTAGACGTG
845 ATTTTTGGCCCCAAACTTGGTAGACGTG
*
15060589 ATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
1 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
15060654 GTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACATGTAA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
15060719 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
131 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
15060784 AAGGGTCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGTCGG
196 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGG
* * * * *
15060849 AACCCCTAATGTCGCCGGTTAAGTTCTCC-GACGATGCTCC-AGTGATGGTGCCCCGACGAAGAA
261 AACCCC-AATGCCACCGGTCAGGTTCTCCAG-CGATGCTCCGA-CGATGGTGCCCCGACGAAGAA
* ** * * * * *
15060912 ATATTTGGCACCAGCACATGCCGGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATC
323 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATC
* * *
15060977 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAGCC
388 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
15061042 GGCCAGAGGGGCGGGATACACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGCTGCCAATCCT
453 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *** * * * *
15061107 GCTGACGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAAC
518 GCTGCCACAACCCTCGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGAC
* * * * * * *
15061172 GGACAAAATGAGCGGGTGGACGGGCGGGCGGGCACGATG-CTGGCAAGAGAGACGGGATGCGCAA
583 CGACGAAATGAGC--G-GG-CGGGCGGGCGGGCACTAGGTC-GGCCAGTGAAACGGGATGCGCAA
* * * * *
15061236 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCATGCCAAAGCCA
643 GCCGTGTATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
* *
15061301 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
708 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
15061366 GACTCATTTT-T-TTTTTCATGATTTTCAAAACCTTTTGCTGTTCGGGATTTTTTAAAATTTTTT
773 GACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
* * * *
15061429 CGGAATGAGTTTTGGTCCCAAACTTGGTAGACGTG
838 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
*
15061464 ATCCTTGTATTTTTTTTGGCATGCACATAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
1 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
15061529 GTGACCATTTGAAAAATGTGTCGCCATTTCAGACACTTTAATGGCTACTGGCAGCG-AACCTGTA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-GAAACCTGTA
* *
15061593 AAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATA
130 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* ** * * *
15061658 TAAGGGCCATGTATTAGCACCCATCGCACATCATGTGCACACACCCCCCGGGCCCCTCGATCGCC
195 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGCC
* ** * * * *
15061723 GGAACCCCAATGTCGTCGGTCAGATTCTCCCGCGATGCTCCGACGATGGTGCCCCGATGAAAAAA
259 GGAACCCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * * *
15061788 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAGCCTCGGTCTGATCCGATCT
324 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCT
* * * * *
15061853 TAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTCAACCG
389 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
15061918 GCCAGAGGGGCAGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGTTGTCGATCCTG
454 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * ** * * * **
15061983 CTGCCACAGCCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCTAAC
519 CTGCCACAACCCTC-GGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGAC
* * ** * * ** * *
15062047 TGATGAAATGAGCGAACGGGTGGGCGGGCACTACGTCGGTAAGAGAGACGGGATGCGCAAGCCGT
583 CGACGAAATGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGT
* * * * *
15062112 GGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
648 GTATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTT
* ** * * *
15062177 ATGGCTTGCAAATTCATACAACAGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTC
713 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
15062242 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTGAAA
778 GTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAA
*
15062307 GGATTTTTGGCCACAAACTTGGTAGACGTG
843 GGATTTTTGGCCCCAAACTTGGTAGACGTG
* * *
15062337 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACACGAAGTGTACAAGATTTT
1 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * * *
15062402 GTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATTGCTACTTGCAGCAAACCTATAA
66 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
* *
15062467 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAGTAT
131 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
15062532 AAGGGCCAAGTACCAGTACCCATCACACATCATG
196 AAGGGCCAAGTACCAGCACCCATCGCACATCATG
15062566 GTGCCTGACG
Statistics
Matches: 3388, Mismatches: 313, Indels: 40
0.91 0.08 0.01
Matches are distributed among these distances:
871 457 0.13
872 1544 0.46
873 608 0.18
875 583 0.17
876 28 0.01
877 168 0.05
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (872 bp):
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGCCGG
AACCCCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCTGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
GCCACAACCCTCGGTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCGA
CGAAATGAGCGGGCGGGCGGGCGGGCACTAGGTCGGCCAGTGAAACGGGATGCGCAAGCCGTGTA
TCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTG
Found at i:15063325 original size:798 final size:794
Alignment explanation
Indices: 15061793--15063359 Score: 2312
Period size: 798 Copynumber: 2.0 Consensus size: 794
15061783 AAAAAAATGT
* * *
15061793 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAGCCTCGGTCTGATCCGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGAC
* * * **
15061858 TGGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTCAACCGGCCAG
66 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCTGGGCACTCAACCGGCCAG
* * ** * * *
15061923 AGGGGCAGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGTTGTCGATCCTGCTGCC
131 AGGGGCAGGATGCACAAGCCGAGGATCAGCCGGATCAACCTCTACGTGCTGTCAATCCTGCTGAC
* * * * * *
15061988 ACAGCCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCTAACTGATGA
196 ACAACCCTCAGTTCAGTCTGATCTTAAACTGGGAATGAAGTCCATATGCCTAAGCCAACGGATGA
* * * * * *
15062053 AATGAGCGAACGGGTGGGCGGGCACTACGTCGGTAAGAGAGACGGGATGCGCAAGCCGTGGATCG
261 AACGAGCGAACGGATGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCCTGGATCA
*
15062118 ATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
326 ATAGGGTGGTAGGTAGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
15062183 TGCAAATTCATACAACAGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTC
391 TGCAAATTCATACAACAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
15062248 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTTGAAAGGATTT
456 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGAAAGGAGTT
* *
15062313 TTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTA
521 TTGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15062378 AAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAA
586 AAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
15062443 TTGCTACTTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTT
651 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTT
* * *
15062508 TGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGTACCCATCACACATCATGGTGCCTG
716 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGGTGCCTG
15062573 ACGAAGAAAAATAC
781 ACGAAGAAAAATAC
* *
15062587 GGCACCAGCACATGCCCGAGCCCAACATGTGCTATCGCAACCCTCGGTTTGATCCGATCTTAGAC
1 GGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGAC
* * **
15062652 TGGGAATGAACTCCGTATGCCTCAGTCAACCCATGAAACGAGCGTCTAGGGCACTCAGTCGGCCA
66 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCT-GGGCACTCAACCGGCCA
** *
15062717 GAGGGGTGGGATGCACAAGCCGAGGATCAGTCGGATCAACCTCTACGTGCTGTCAATCCTGCTGA
130 GAGGGGCAGGATGCACAAGCCGAGGATCAGCCGGATCAACCTCTACGTGCTGTCAATCCTGCTGA
** * *
15062782 TGCAACCTTCAG-TCTAGTAC-GATCTTAAACT-GGAATGAATTCCATATGCCTAAGCCAACGGA
195 CACAACCCTCAGTTC-AGT-CTGATCTTAAACTGGGAATGAAGTCCATATGCCTAAGCCAACGGA
* *** * *
15062844 TGAAACGAGTGGGTGGATAGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCC
258 TGAAACGAGCGAACGGAT--G--GGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCC
* *
15062909 TGGATCAATAGGGTGGTAGGTAGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
319 TGGATCAATAGGGTGGTAGGTAGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* **
15062974 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
384 TATGGCTTGCAAATTCATACAACAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
15063039 CGTTTTCTTTTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAAATTTTTTGAA
449 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGAA
* ** *
15063104 AGGAGTTTTGGGCGTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAAT
514 AGGAGTTTTGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
** *
15063169 TCAGCTAAAAACTTGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
579 TCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
15063234 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGAGGTGTGAGTTCT
644 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCT
* * *
15063299 CGAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAATACCAGCACGCATCGCACAT
709 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACAT
15063360 GATACGTGCA
Statistics
Matches: 684, Mismatches: 82, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
794 143 0.21
795 88 0.13
796 2 0.00
798 451 0.66
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (794 bp):
GGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCTGGGCACTCAACCGGCCAG
AGGGGCAGGATGCACAAGCCGAGGATCAGCCGGATCAACCTCTACGTGCTGTCAATCCTGCTGAC
ACAACCCTCAGTTCAGTCTGATCTTAAACTGGGAATGAAGTCCATATGCCTAAGCCAACGGATGA
AACGAGCGAACGGATGGGCGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCCTGGATCA
ATAGGGTGGTAGGTAGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGCAAATTCATACAACAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGAAAGGAGTT
TTGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGGTGCCTG
ACGAAGAAAAATAC
Found at i:15064426 original size:26 final size:26
Alignment explanation
Indices: 15064390--15064442 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15064380 TTGGTCTGAT
*
15064390 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15064416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15064442 C
1 C
15064443 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15065322 original size:26 final size:26
Alignment explanation
Indices: 15065286--15065338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15065276 CTGGTTCGAT
*
15065286 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
15065312 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
15065338 C
1 C
15065339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:15065991 original size:896 final size:900
Alignment explanation
Indices: 15063528--15066589 Score: 4407
Period size: 897 Copynumber: 3.4 Consensus size: 900
15063518 TGATCTTAGG
* * * * * * *
15063528 CTGGGAATGAAC-CTCGTATGCCTAAGTCATCCCATGACACGAGTGTACGGGCGCTCAGCCGGCT
1 CTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * *
15063592 AGAGGGGCAGGATGCACAAGCCGGGGAT-CGCTCGCGTCCCCCTCTACGTGCTGCCGATCCTACT
65 AGAGGGGCGGGATGCGCAAGCCGGGGATCCGC-CGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
* * * *
15063656 ACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
129 GCCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
15063721 CGAAACAA----GTGGGCGGGCGGGCA--C-TACGCCGACCAGAGAGACAGGATGCGCAAGCCGT
194 TGAAACAAGCGGGCGGGCGGGCGGGCAGGCATACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
15063779 GGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGGCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
15063844 ATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
15063909 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCT-ATTCGGGATTTTTGAAAATTTTTTCAGA
389 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTG-TGATTCGGGATTTTTTAAAATTTTTTCGGA
*
15063973 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
15064038 TCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
15064103 ACTTTAATGGCTACTGGCAGCCAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTAT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTT
* *
15064168 CGAGGTTTGATGAGGGATA-GGGGCCAATAGAAGGGCCAAGTACCAGCACCCATTGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--
* * * * * * *
15064232 TGTGCACAGA-CCCCTAACCCCCCGACCGTCGGAACCCCGATGCCGTC-AGTCAGGTTCTTCGGC
711 TGTGCACACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGGC
* ** * * * *
15064295 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAAAGTGGCACCCGCACATGCCCGAGCCCAGCAT
775 GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
* * * * *
15064360 GTGCTACCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
840 GTGCTACCGCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGAACTCCATATGCTTAAA
15064422 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CTGGCC
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCC
* * * * * * *
15064486 AGAGGGGCGGGATGCGCAACCCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGCAGATCCTGCAG
65 AGAGGGGCGGGATGCGCAAGCCGGGGATCCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTG
* * *
15064551 CCGCAACCC-TCAGTCTGGATC-GATCTTTGACTGGGAATTAACTCCGTATGCCTAAGCCAACCG
130 CCGCAACCCTTGA-TCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*** * *
15064614 ATGAAGTGAGCGGGCGGGCGGGCGGGCA--C-TACGCCGACCAGAGAGACGGGATGCGTC-AGCT
193 ATGAAACAAGCGGGCGGGCGGGCGGGCAGGCATACGCCGGCCAGAGAGACGGGATGCG-CAAGCC
*** *
15064675 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAAGCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * * *
15064740 TTATGGCTTGTAAATTCGTAAAATGGTCCCTTAA-CCTTCACGTGAAGTTTCATGCCAAAACGAA
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * * *
15064804 TTGTTTTCTATTTTTCATGATTTTTGAAACTTCTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
387 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTCGG
* * *
15064869 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTCGCATGCACAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
15064934 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
15064999 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGTTGTGAGTTT
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTT
15065064 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
15065128 GTGCACACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCGCCGGCGA
712 GTGCACACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGA
* ** * *
15065193 TGCTCCGGTGATGGTGCCCTAGCGAAGAAAAATGCGGCACCAGTACATGCCCAAGCCTAGCATGT
777 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGT
*
15065258 GCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAAA
842 GCTACCGCAACCCTCGGTCTGG-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAAA
15065318 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCGGCCA
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* * *
15065382 GA-GGGCGGGATGTGCAAGCCGGGGATCCGCCGGGTCCCCCTCTACGTGCTACCGATCCTG-TGT
66 GAGGGGCGGGATGCGCAAGCCGGGGATCCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC
* *
15065445 CGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCGATG
131 CGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * * *
15065510 AAATAAGCGGGCGGGCGGGCGGGCAGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATA
196 AAACAAGCGGGCGGGCGGGCGGGCAGGCA-TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
15065575 GATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTG
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
15065639 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACCCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** *
15065704 TTTTCCATTTTTCATGATTTTTGAAACTTTTTATGATTCGGGATTTTTTAAAATTTTTTCGGAAG
390 TTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTCGGAAG
*
15065769 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
15065834 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTCAGACAC
520 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15065898 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCA
585 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCG
* *
15065963 AGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTG
650 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
15066028 CACACACCCCCCCAGCACCCCCGATCGTCGGAACCCTAATGTCGCCAATTAGGTTCTCCGACGAT
715 CACACA-CCCCCCAGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGAT
* * **
15066093 GCTCCGGCGATGGTGCCCCGGCGAAGTAAAATGCGGCACCAGTACATGCCTGAGCCCAGCATGTG
778 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
*
15066158 CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATTGAACTCCATATGCTTAAA
843 CTACCGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGAACTCCATATGCTTAAA
* *
15066217 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCA
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* * * ** * *
15066282 AAAGGGCAGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTACGTGCTTCCGATCCTGCTGC
66 GAGGGGCGGGATGCGCAAGCCGGGGATCCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC
* * * *
15066347 CGCAACCCTCTG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAAC
131 CGCAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
** * * *
15066411 GAAACAAGCGGGCAAGCGGCCGGGCAGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGT
195 GAAACAAGCGGGCGGGCGGGCGGGCAGGCA-TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
15066476 AGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
15066541 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
15066590 GTGCCGGGGA
Statistics
Matches: 1951, Mismatches: 184, Indels: 57
0.89 0.08 0.03
Matches are distributed among these distances:
892 2 0.00
893 80 0.04
894 214 0.11
895 30 0.02
896 343 0.18
897 622 0.32
898 159 0.08
899 203 0.10
900 17 0.01
901 52 0.03
902 175 0.09
903 54 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
GAGGGGCGGGATGCGCAAGCCGGGGATCCGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGC
CGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
AAACAAGCGGGCGGGCGGGCGGGCAGGCATACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
ACACACCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCT
CCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTA
CCGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAACTCCATATGCTTAAA
Found at i:15066221 original size:26 final size:26
Alignment explanation
Indices: 15066185--15066237 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15066175 CTGGTCCGAT
* *
15066185 CTTAGACTGGGATTGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
15066211 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
15066237 C
1 C
15066238 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:15070224 original size:25 final size:26
Alignment explanation
Indices: 15070190--15070241 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
15070180 CTGGTCTGAT
15070190 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
15070215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15070241 C
1 C
15070242 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15072003 original size:26 final size:26
Alignment explanation
Indices: 15071974--15072029 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15071964 CTGATCCGAT
* *
15071974 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* *
15072000 CTTAGACTAGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15072026 CTTA
1 CTTA
15072030 AGTCAATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15072901 original size:26 final size:26
Alignment explanation
Indices: 15072872--15072924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072862 CTGATCCGAT
15072872 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
15072898 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15072924 C
1 C
15072925 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15073362 original size:903 final size:900
Alignment explanation
Indices: 15068451--15079119 Score: 13013
Period size: 896 Copynumber: 12.0 Consensus size: 900
15068441 CTGGTCCGAT
* * *
15068451 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
15068516 CGGCCAGAGGGGTGGGATGCCCAAGCCGAGGATCGATCGGGTCCTCCTCTGCTTGCTACCGATCC
66 CGGCCAGAGGGG-CGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
15068581 TGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15068646 CCAACGAAATGAGTGGGTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGAC-GGAATGCGCA
195 CCGACGAAACGAGCGGG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGG-ATGCGCA
* ***
15068710 AGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
15068775 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * *
15068840 AGACTCGTTTTCTATTTTTCAGGACTTTCGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTCT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
15068905 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCACGCATAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
15068970 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAATTGAATAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
15069035 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
15069099 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
15069164 TCATGTGTGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
* ** *
15069229 GGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGATAGCAGCACATGGCT-GAGCCCA
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCTCGAGCCCA
*
15069293 GCATGTGCTGCCACAA-CC-C--TC-G----G-TC-----C---G---G---TCCG-AT-
841 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15069327 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
15069392 TGGCCAGAGGGGTGAGATGCGCAAGCCGGGGATCGACCGGG-CCCCCTCTTCGTGCTATCGATCC
66 CGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * ** * * * * *
15069456 TACAGCCACAACACTCGGTCCAGTCAAATCATAGGCTAGGAATAAACTCTGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
15069521 TCGTCGAAACGA-----------GCAGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
195 CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
*
15069575 CCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
15069640 TTTTATGGCTTGTAAATTGATACAACGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * * * *
15069705 ACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* ** * *
15069770 GGAAGGTA-TTTTCGCCCCAAACTTTCTTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 GGAAGG-AGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
15069834 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15069898 CAGACACTTTAATGGCTAC-GAGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTG
583 CAGACACTTTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
15069961 CA-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 -AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
15070025 CATCATGTGCGCACACCCCCCGGCCCCCCTGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCT
711 CATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * * * * *
15070090 CCGGCGATGCTCCGGTGATGGTGCCCCGATGAACAAAAATACGACACCAGCACATGCCCGAGCCC
775 CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * *
15070155 GGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC-TATG
840 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15070215 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * * *
15070280 CGGCCAAAGGGGTGGGATGCGCAAGCTGAGGAT-TAGCTGGGTGCCTCTCTGCATGTTGTCGATC
66 CGGCCAGAGGGG-CGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTACGTGCTGCCGATC
* * *
15070344 CTGCTGCCACAACCCTCGG-CCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * ** *
15070408 AACCGATGAAACGAAC--G-GGTGGGAGGGCGGGCATTACGTTGGCC-GAGAGACCGGATGCGCA
193 AACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
**
15070469 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
15070534 ATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGG
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
15070599 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTTCGGTTCGAAATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * ***
15070664 TCAGAAGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCACATATTTTTGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
15070729 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** ** * *
15070794 CAGACACTTTTTTGGCTACAAGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGAGGGGTG
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTG
* * *
15070859 AGTTCTCAAGGTTTGATGAGGGATAGCGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * *
15070924 ATCATGTGTACACA-CCCCCGG-CCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTCT-T
712 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
** * *
15070986 CGGCGATGCTCCGGTGATGGTGCCCC-ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
777 -GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * ** * * * * * *
15071050 ACATGTGCTGCCGTAACCCTCAATATGGTCTGATCTTAGATTGGGAATGAACTCTGTACG
841 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
15071110 CTTAGACTGGGAATGAACTCCGTATGATTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * *
15071175 CGGCCAGAGGGGATGTAAGCGCAAGCCGGGGATC-AGCGTGGGTCCCCCTCTGTGCGCTGCCAAT
66 CGGCCAGAGGGG-CGGATGCGCAAGCCGGGGATCGA-C-CGGGTCCCCCTCTACGTGCTGCCGAT
* * * **
15071239 CCTGCTTCCGCAACCCTCTGTTCGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
15071304 AACCGACGAAATGAGC--G-GGCGGGCGAGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGC
193 AACCGACGAAACGAGCGGGCGGCGGGCG-GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGC
15071366 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
15071431 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *** *
15071496 ATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTCGTGGTTCGGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
15071561 TT--GAATGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCATA
452 TTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
15071624 GAAAAACTTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCA
516 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
15071689 TTTCAGACACTTTATTGGCTACGGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTACGGGGGGG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15071754 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
15071819 AAATCATGTGTGCACACCCACCCGGCCCCCCTGATCGTCGGAACCCTAATGCCGTCGGTCAGG--
710 ACATCATGTGCGCACACCC-CCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
15071882 ---T-----T-CTCCGACGATGGTTCCCCGACGAAGAAAAATGCGGTACCCGCACATGCTCGAGC
773 CTCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
* * * * * * *
15071938 CCAACATGTGTTGTC-AAACCCTCGTTCTGATCCGATCTTAGACTGGGAATCAACTCTGTATG
838 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15072000 CTTAGACTAGGAATGAAGTCCGTATGCTTAAGTCAATCGAC-AAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
15072064 TGGCCAGAAGGGATGTATGCCCAAGCCAGGGATCGA-CGTGGGCCCCCTCTATGCGCTGCCGATC
66 CGGCCAG-AGGGGCGGATGCGCAAGCCGGGGATCGACCG-GGTCCCCCTCTACGTGCTGCCGATC
* * ** * ** *
15072128 CTACTACCGCAACCCTCTATCCGATCCCATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15072193 ACCGACGAAACGAAC--G-GGTGGGAGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* *
15072255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
15072320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
15072385 GACTCGTTTTCTAGTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
15072450 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCTGTTGGCATGCATAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAA
* * * * * *
15072515 AAAACTTCAGTTAAAAAATCGAAGTGTACAAGATTATGTGGCCAATTGAATAAAGTGTCCCCATT
518 AAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
15072580 TCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAGATGCTTTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15072645 AGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15072710 ATCATGTGCGCACA-CCCCCGGCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAAGTTCTCT
712 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
* * * ** * ** *
15072774 GACGATGCTCCGACGACGGTTCCCCGATAAAGAAAAATACGATACCCGCACATGCTCGAGCCCAG
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * *
15072839 CATGTGCTGTCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATCAACTCCGTATG
842 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15072898 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTA-CTGTGCGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAG
* * * * * *
15072962 CCGGCCAGAGGGGCGGCATGCGCAAGCTGGGGTTCGAACGGGTCACCCTTTACGTGCTGTCGATC
65 CCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATC
* ** * *
15073027 CTGCTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAAGTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15073092 ACCGACGAAACGAGCGGGCAGGCGGGCGGGTGGGCACAACGCCAGCCAGAGAGACAGGATGTGCA
194 ACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * * * * * *
15073157 AGCCATGGATTGATAGGGTGATAGGTGGGTTTAGGTACATCTTCATATTTTTGAATACCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
15073222 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
15073287 CGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
15073352 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTGTT-TTGGCATGCACAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAA
*
15073416 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
15073481 TAAGACACTTTAATGGCTACTGGTAGCAAACCCGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15073546 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
15073611 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCTAATACCTTCGATTAGGTTCT
712 ATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * *
15073676 CTGACGATGCTCCGGTGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
775 CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
15073741 AGCATGTGCTGCCGCAA-CC-C--TC-G----G-TC-----C---G---G---TCCG-A-G
840 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15073776 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * ** * *
15073841 CGGTTAGAGGGGTGGAATTTGCAAACCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
15073906 TGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCAAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15073971 CCGACGAAACGAACGGGCGGGCGAGCGGGCGGGCACTACGCCGACCAAAGAGACAGGATGCACAA
195 CCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* ***
15074036 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
15074101 TTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
15074166 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAACATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
15074231 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15074296 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15074361 AGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
15074426 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * **
15074491 CATGTGCGCACACCCCCCCCCGGCCCTTCCGATCATCGGAACCCCCAATGCCGTCTTTCAGGTTC
714 CATGTGCGCACA---CCCCCCGGCCC-CCCGATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTTC
* ** * * ** *
15074556 TCCGGTAATGCTCCGATGATGGTGCCTCGGTGAAGAAAAATGAGGCACCAGCACATGCTCGAGCC
774 TCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
* * * * * *
15074621 CAACATGTGCTGCCGTAACCCTCGGTC-CAGTCCTATCCTAGACTGGGAATGAACTCCATATG
839 CAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15074683 CTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCACGAAATGAGCGCGCGGGCGATCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
15074748 CAGCCAGAGGGGCGAGATGTGCAAGACGAGGATCGAGCAGGTCCCCCTCTACATGCTGCTGATCC
66 CGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * ** * *
15074813 TGCTACCACAACACTCGGTCCGATCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15074878 CTGACGAAACAAACGGACGGGCGGAGGGGCGGGCGGGCACTATGCCGGCCAGAGAGACCA-AATG
195 CCGACGAAAC-GA--G-CGGGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGA-CAGGATG
* *
15074942 AGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
254 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
15075007 TGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGG
319 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** *
15075072 AAGACGACTCGTTTTCTACTTCTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
384 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* **
15075137 TTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTACCATGCA
449 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
15075202 CAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
514 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
15075267 ATATCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
579 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
15075332 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATACA-GGCCAAGTACCAGCACCCATT
644 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATC
* * * *
15075396 GCACATCATGTGTGCGCAC-CCCCTCCGGCCCCCCAAACG-CGAGAACCCCAATGTCGCCGGTCA
708 GCACATCA--TGTGCGCACACCCC-CCGGCCCCCCGATCGTCG-GAACCCCAATGCCGTCGGTCA
* * * *
15075459 GGTTCTCCT-ACGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAAAGCGGCACCAGCACATGCC
769 GGTTCT-CTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCT
** **
15075523 CGAGCCCAATATGTGCTGCTACAA-CC-C--T-TG----G---TT----T--G---G---TCCG-
833 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGT
15075563 AT-
898 ATG
* * * * * *
15075565 CTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGGGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
15075630 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT--CCC-C--C-T-CTG-C-A---
66 CGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
15075683 TGCTGCCACAACACTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * * * *
15075748 CAGATAAAATGAGC---AGGCAGGCGGGCAGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAG
195 CCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
*
15075810 CCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
15075874 TTTTATGGCTTGTAAATTCAAAAAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
15075939 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTGAAAATTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
**
15076003 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGATTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15076068 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGACAAAAA-TGTCCCAATTT
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTT
* *
15076132 TAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15076197 GTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
15076262 TCATGTGCGCACACCCCCTGGCCCCCCCATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCG
713 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTG
* ** * * * * * *
15076327 ACGATGCTCCGGTGATGGTGCCCCGGCAAAGAAAAATGCAGCACTAGCACGTGCCCGAGCCCAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
* * * * * * *
15076392 ATGTGCTGTCGTAACCTTCGGTTTGGTCCGATCTTAGACTGGGAATGAATTTCGTATG
843 ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15076450 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAATGAGCGT----GCGC-C-G-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
15076508 -ATCC-TA-------TTGC-C-A--C----A---A--------CCCTCTGCGTGCTGCCGATCCT
66 CGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCT
** * * **
15076545 ATTGCCACAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
15076610 CGACGAAACGAGCGGGTAGGCGGACGGGTGGGCATTACGCTGGACAGAGAGACAAGATGTGTAAG
196 CGACGAAACGAGCGGG-CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAG
* * * *
15076675 CCGTGGATCGATAGGGTGGTAAGTTGGTTTAGGCACATCTTCGTATTTCTACATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
15076740 TTTTCTGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
15076805 ACTCGTTTTCTATTTTTCACGATTTTTGAAGCTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
15076870 GGAAGGAGTTTTGGCCCCAAACTTGGTAGCCATGATCCTTGTATTTTTGTTGGCATGCACAAAAC
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
15076935 AATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15077000 GACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
15077065 TCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCACGTACCAGCACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
15077130 ATGTGCACACACACCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCT
715 ATGTG--CGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCT
* ** * * * *
15077195 GGCGTTGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAACATATGGC-CGAGCCCC
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCTCGAGCCCA
* * ** * * * *
15077259 GCAAGTGCTGCTGCAACCCTCGGTCCAATTCGACCTTAGACTAGGAATGAACTACGTATG
841 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15077319 CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * *
15077383 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATTGGCTGGGT-CCCCTTTACGTGCTGCCGATC
65 CCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATC
* * * ** * **
15077447 CTGCTGCTGCAACTCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
15077512 ACCTACGAAATGAGC--G-GGCGGGCGGGC--G--CTACGCCGGCCAGAGAGACAGGATGCGCAA
194 ACCGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* ** *
15077570 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTTATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
15077635 TTTTTATGGCTTGTAAATTCATACAATGGTCCGTCAAACCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *** * * *
15077700 GACTCGTTTTTTATTTTTCACGATTTACAAAACTTTTTGCGGTTTGAGATTTTATAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
15077765 CGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGAATTTTTTTTGGCATGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
15077830 AAATTCAGCTAAACACTCGAGGGGTACATGATTTCGTGACCATTTG-AAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
15077894 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
15077959 TTTTGGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCTAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
15078024 CATGTGTGCACACCCCCACCCGACCCCCCTGATCG-CTGGAACCCCGATGCCATTGATCAGGTTC
714 CATGTGCGCACA--CCC-CCCGGCCCCCC-GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC
* *
15078088 TTTGGCGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG-TCCGAG
774 TCTGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCT-CGAG
* * * * *
15078151 CCCAGCGTGTGCTGCCGCAACCCTCGATC-CAGTCTGATCTTAGATTGGGAATGAACTCCGTATG
837 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15078215 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15078280 C-GCCTAGAGGGGCAGGATGTGCAAACCGGGGATCGGCCGGGTCCCCCTCTGCGTACTGCCAATC
66 CGGCC-AGAGGGGC-GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATC
* ** * **
15078344 CTACTATCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15078409 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGG-C-TAGAGACGGGATGTGCA
194 ACCGACGAAACGAGCGGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * * * *
15078472 AACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTTCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * * *
15078537 ATTTTTATGGCTTGTAAACTAATACAATTGTTCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-
*
15078602 AC-ACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
15078666 TTCGAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
15078731 AAAAAGTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
15078796 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15078860 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCGGCACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15078925 ATGATGTGCGCACACACCCCCCGGCCCCCCCGATCGTCGGAA-CCCAATACCGTCGGTCAGGTTC
712 ATCATGTGCG--CACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * *
15078989 TCCGACGATGCTCCGACGATGGTGCCCCGGA-GAATAAACATGCGGCACCAACATATGCCCGAGC
774 TCTGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
* * * *
15079053 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATG
838 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
15079116 CTTA
1 CTTA
15079120 AGCCAACCAA
Statistics
Matches: 8498, Mismatches: 1031, Indels: 503
0.85 0.10 0.05
Matches are distributed among these distances:
851 3 0.00
852 1 0.00
854 1 0.00
855 1 0.00
856 3 0.00
857 2 0.00
858 2 0.00
859 110 0.01
860 9 0.00
861 471 0.06
862 54 0.01
863 480 0.06
864 102 0.01
865 53 0.01
866 410 0.05
867 5 0.00
868 17 0.00
869 184 0.02
870 67 0.01
871 2 0.00
872 1 0.00
873 6 0.00
874 2 0.00
875 84 0.01
876 94 0.01
877 8 0.00
878 654 0.08
879 4 0.00
880 32 0.00
881 94 0.01
882 89 0.01
883 7 0.00
884 6 0.00
885 47 0.01
886 32 0.00
887 240 0.03
888 241 0.03
889 323 0.04
890 96 0.01
891 48 0.01
892 1 0.00
893 4 0.00
894 83 0.01
895 385 0.05
896 916 0.11
897 322 0.04
898 479 0.06
899 135 0.02
900 18 0.00
901 352 0.04
902 36 0.00
903 647 0.08
904 259 0.03
905 15 0.00
906 2 0.00
907 171 0.02
908 89 0.01
909 12 0.00
910 9 0.00
911 466 0.05
912 3 0.00
913 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15076475 original size:26 final size:26
Alignment explanation
Indices: 15076424--15076476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15076414 TTGGTCCGAT
* * *
15076424 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15076450 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15076476 C
1 C
15076477 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15076541 original size:32 final size:31
Alignment explanation
Indices: 15076498--15076559 Score: 115
Period size: 32 Copynumber: 2.0 Consensus size: 31
15076488 CAAGAAATGA
15076498 GCGTGCGCCGATCCTATTGCCACAACCCTCT
1 GCGTGCGCCGATCCTATTGCCACAACCCTCT
15076529 GCGTGCTGCCGATCCTATTGCCACAACCCTC
1 GCGTGC-GCCGATCCTATTGCCACAACCCTC
15076560 GATTTGGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 6 0.20
32 24 0.80
ACGTcount: A:0.16, C:0.42, G:0.19, T:0.23
Consensus pattern (31 bp):
GCGTGCGCCGATCCTATTGCCACAACCCTCT
Found at i:15077331 original size:26 final size:26
Alignment explanation
Indices: 15077295--15077348 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15077285 AATTCGACCT
15077295 TAGACTAGGAATGAACTACGTATGCC
1 TAGACTAGGAATGAACTACGTATGCC
* *
15077321 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTACGTATGCC
15077347 TA
1 TA
15077349 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTACGTATGCC
Found at i:15078225 original size:26 final size:26
Alignment explanation
Indices: 15078189--15078241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15078179 CCAGTCTGAT
* *
15078189 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15078215 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15078241 C
1 C
15078242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15078235 original size:896 final size:895
Alignment explanation
Indices: 15068451--15076504 Score: 7837
Period size: 878 Copynumber: 9.1 Consensus size: 895
15068441 CTGGTCCGAT
* * * * *
15068451 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
** * * ** * * * * * *
15068516 CGGCC-AGAGGGGTGGGATGCCCAAGCCGAGGATCGATCGGGTCCTCCTCTGCTTGCTACCGATC
66 C-GCCTAGAGGGGCAGGATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAATC
* * * * ** ** *
15068580 CTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTATCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
15068645 ACCAACGAAATGAGTGGGTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGAC-GGAATGCGC
195 ACCGACGAAACGAG-CGG-AGGCGGGCGGGC--G--CTACGCC-GGCAGAGAGACAGG-ATGTGC
* **
15068709 AAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
15068774 CATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
15068839 AAGACTCGTTTTCTATTTTTCAGGACTTTCGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTC
381 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
* * * * *
15068904 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCACGCATAA
446 TTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * *
15068969 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAATTGAATAAAGTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
15069034 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
15069098 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
641 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
15069163 ATCATGTGTG--CACACCCCCCGGCCCCCTCGATCG-TCGGAACCCCAATGTCGCCGGTCAGGTT
706 ATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGATCAGGTT
* * ** * * * * *
15069225 CTCCGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGATAGCAGCACATGGCTGAGC
770 CTCTGGCGATGCTCCG-CGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGAGC
* * * *
15069290 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATG
833 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15069353 C-----CT---AA-G---T-CA-A---C----TC-A--C--GAAATGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** *
15069392 TGGCC-AGAGGGG-TGAGATGCGCAAGCCGGGGATCGACCGGG-CCCCCTCTTCGTGCTATCGAT
66 -CGCCTAGAGGGGCAG-GATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAAT
* * * * * * * * * * *
15069454 CCTAC-AGCCACAACACTCGGTCCAGTCAAATCATAGGCTAGGAATAAACTCTGTATGCCTAAGC
129 CCTACTA-TCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
15069518 CAATCGTCGAAACGAGC--A----GGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCC
193 CAACCGACGAAACGAGCGGAGGCGGGCGGGCGCTACGCCGG-CAGAGAGACAGGATGTGCAAGCC
* *
15069577 GTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
15069642 TTATGGCTTGTAAATTGATACAACGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
322 TTATGGCTTGTAAATTCATACAATGGTCC-TCAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
15069707 TCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGG
386 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGG
* * ** *
15069772 AAGGTA-TTTTCGCCCCAAACTTTCTTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
451 AAGG-AGTTTTGGACCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
15069836 AATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTCA
514 AATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15069900 GACACTTTAATGGCTAC-GAGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGCA
579 GACACTTTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG-A
15069963 -TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
15070027 TCATGTGCG--CACACCCCCCGGCCCCCCTGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCT
707 TCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCT
* * * * * * *
15070090 CCGGCGATGCTCCGGTGATGGTGCCCCGATGAACAAAAATACGACACCAGCACATGCCCGAGCCC
772 CTGGCGATGCTCC-GCGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGAGCCC
* * *
15070155 GGCATGTGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCC-TATG
835 AGCATGTGCTGCCGCAACCCTCGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15070215 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAG-
* * ** * * ** * * * * * ** * *
15070280 CGGCC-AAAGGGGTGGGATGCGCAAGCTGAGGATTAGCTGGGTGCCTCTCTGCATGTTGTCGATC
65 CCGCCTAGAGGGGCAGGATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAATC
* ** * ** * * *
15070344 CTGCTGCCACAACCCTCGGCCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTATCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** ** * * *
15070409 ACCGATGAAACGAACGGGTGGGAGGGCGGGCATTACGTTGGCCGAGAGACCGGATGCGCAAGCCG
195 ACCGACGAAACGAGC-GG-AGGCGGGCGGGCGCTACGCCGGCAGAGAGACAGGATGTGCAAGCCG
***
15070474 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
15070539 TATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACT
323 TATGGCTTGTAAATTCATACAATGG-TCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * * *
15070604 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTTCGGTTCGAAATTTTTTAAAATTTTTTCAGA
387 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGA
* * *** *
15070669 AGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCACATATTTTTGTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
15070734 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
** ** * *
15070799 ACTTTTTTGGCTACAAGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGAGGGGTGAGTTC
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTC
* * *
15070864 TCAAGGTTTGATGAGGGATAGCGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
15070929 GT--GTACACA-CCCCCGG--CCCCCGATCG-TCAGAACCCCAATGTCGTCGGTCAGGTTCT-TC
711 GTGCGCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGATCAGGTTCTCT-
* * * * *
15070987 GGCGATGCTCCGGTGATGGTGCCCC-ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAA
774 GGCGATGCTCC-GCGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGAGCCCAG
* ** * * * *
15071051 CATGTGCTGCCGTAACCCTCAAT--ATGGTCTGATCTTAGATTGGGAATGAACTCTGTACG
837 CATGTGCTGCCGCAACCCTCGGTCCA-GTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
15071110 CTTAGACTGGGAATGAACTCCGTATGATTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** **
15071175 CGGCC-AGAGGGG-ATGTAAGCGCAAGCCGGGGATCAGCGTGGGTCCCCCTCTGTGCGCTGCCAA
66 C-GCCTAGAGGGGCA-GGATGCGCAAACCGAGGATCGGC-CGGGTCCCCCTCTACGTACTGCCAA
* * * *
15071238 TCCTGCT-TCCGCAACCCTCTGTTC-GGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAA
128 TCCTACTAT-CGCAACCCTC-GATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
15071301 GCCAACCGACGAAATGAGCGGGCGGGCGAGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGC
191 GCCAACCGACGAAACGAGC-GG-AGGCG-GGCGGGCGCTACGCCGG-CAGAGAGACAGGATGTGC
*
15071366 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
15071431 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *** * *
15071496 ATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTCGTGGTTCGGGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
* * * *
15071561 TT--GAATGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCATA
446 TTCGGAA-GGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * * *
15071624 GAAAAACTTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCA
510 -AAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
15071689 TTTCAGACACTTTATTGGCTACGGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTACGGGGGGG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15071754 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
15071819 AAATCATGTGTGCACAC-CCACCCGGCCCCCCTGATCG-TCGGAACCCTAATGCCGTCGGTCAGG
704 ACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGATCAGG
* * ** * *
15071882 TTCTC---CGA-------CGATGGTTCCCCGACGAAGAAAAATGCGGTACCCGCACATGCTCGAG
768 TTCTCTGGCGATGCTCCGCGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGAG
* * * * * * * * *
15071937 CCCAACATGTGTTGTC-AAACCCTC-GTTCTGATCCGATCTTAGACTGGGAATCAACTCTGTATG
832 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
15072000 CTTAGACTAGGAATGAAGTCCGTATGCTTAAGTCAA-TCGACAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * ** *
15072064 TGGCC-AGAAGGG-ATGTATGCCCAAGCC-AGGGATC-GACGTGGGCCCCCTCTATGCGCTGCCG
66 -CGCCTAGAGGGGCA-GGATGCGCAAACCGA-GGATCGGCCG-GGTCCCCCTCTACGTACTGCCA
* * * * *
15072125 ATCCTACTACCGCAACCCTCTATC-CGATCCCATCTTAGACTGGGAATGAACTCTGTATGCCTAA
127 ATCCTACTATCGCAACCCTCGATCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
15072189 GCCAACCGACGAAACGAACGGGTGGGAGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCA
191 GCCAACCGACGAAACGAGC-GG-AGGCGGGCGGGCGCTACGCCGG-CAGAGAGACAGGATGTGCA
* * *
15072254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCGTGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
15072319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATCGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * * *
15072384 TGACTCGTTTTCTAGTTTTCATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTT
* * * *
15072449 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTCTGTTGGCATGCATAA
447 TCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTTGGCATGCACAA
* * * * * * *
15072514 AAAAACTTCAGTTAAAAAATCGAAGTGTACAAGATTATGTGGCCAATTGAATAAAGTGTCCCCAT
511 AAAAA-TTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
15072579 TTCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAGATGCTTTTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
15072644 GAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15072709 CATCATGTGCG--CACA-CCCCCGG-CCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAAGTT
705 CATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTT
* * * * * ** ** * *
15072770 CTCTGACGATGCTCCGACGACGGTTCCCCGATAAAGAAAAATACGATACCCGCACATGCTCGAGC
770 CTCTGGCGATGCTCCG-CGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGAGC
* * * * * *
15072835 CCAGCATGTGCTGTCGTAACCCTCGAT-CTGATCCGATCTTAGACTGGGAATCAACTCCGTATG
833 CCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15072898 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTA-CTGTGCGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGC-GTGCGGGCGCTCAG
* * * * ** * * * * *
15072962 CCGGCC-AGAGGGGC-GGCATGCGCAAGCTGGGGTTCGAACGGGTCACCCTTTACGTGCTGTCGA
65 CC-GCCTAGAGGGGCAGG-ATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAA
* * * * * ** * *
15073025 TCCTGCTGTCGCAACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAAGTCCGTATGCCTAAGC
128 TCCTACTATCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
15073090 CAACCGACGAAACGAGCGGGCAGGCGGGCGGGTGGGCACAACGCCAGCCAGAGAGACAGGATGTG
193 CAACCGACGAAACGAGC-GG-AGGCGGGC----GGGCGCTACGCC-GGCAGAGAGACAGGATGTG
* * * * * *
15073155 CAAGCCATGGATTGATAGGGTGATAGGTGGGTTTAGGTACATCTTCATATTTTTGA-ATACCAAT
251 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAAT
*
15073219 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
315 GCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
15073284 AGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTT
379 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATT
* * * *
15073349 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTGTTTTGGCATGCAC
444 TTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
15073414 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
509 AAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
15073479 TTTAAGACACTTTAATGGCTACTGGTAGCAAACCCGTAAAATCTCAAATGCTCTTTAAAGGGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
15073544 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCAC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
15073609 ACATCATGTGCGCACAC-CCCCCCGGCCCCCTCGATCG-TCGGAACCCTAATACCTTCGATTAGG
704 ACATCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTCGATCAGG
* * * * * * *
15073672 TTCTCTGACGATGCTCCGGTGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGA
768 TTCTCTGGCGATGCTCC-GCGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAACATATGCCCGA
15073737 GCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C---G---G---TCCG-A-G
831 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15073776 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
** * ** * * *
15073841 CGGTTAGAGGGG-TGGAATTTGCAAACCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATC
66 CGCCTAGAGGGGCAGG-ATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAATC
* * * * ** * *
15073905 CTGCT-GCTGCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCAAAGC
130 CTACTATC-GCAACCCTC-GATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * **
15073968 CAACCGACGAAACGAACGGGCGGGCGAGCGGGCGGGCACTACGCCGACCAAAGAGACAGGATGCA
193 CAACCGACGAAACG-A---GC-GGAG-GCGGGCGGGCGCTACGCCG-GCAGAGAGACAGGATGTG
* **
15074033 CAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
251 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
15074098 CCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
316 CCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
15074163 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAACATTT
380 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTT
* * * * * *
15074228 TTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATA
445 TTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
15074293 AAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
510 AAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
15074358 ATCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
15074423 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * **
15074488 CATCATGTGCGCACACCCCCCCCCGGCCCTTCCGATC-ATCGGAACCCCCAATGCCGTCTTTCAG
705 CATCATGTGCGCACA-CACCCCCCGGCCCCCCCGATCGCT-GGAA-CCCCAATGCCGTCGATCAG
* ** * * * * * * *
15074552 GTTCTCCGGTAATGCTCCGATGATGGTGCCTCGGTGAAGAAAAATGAGGCACCAGCACATGCTCG
767 GTTCTCTGGCGATGCTCCG-CGATGGTGCC-CCGAGAAGAAAAATGCGGCACCAACATATGCCCG
* * * * * *
15074617 AGCCCAACATGTGCTGCCGTAACCCTCGGTCCAGTCCTATCCTAGACTGGGAATGAACTCCATAT
830 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTAT
15074682 G
895 G
* * * * * * *
15074683 CTTAGACTGGGAATGAACTTCGTATGCCTAATTCAACCCACGAAATGAGCGCGCGGGCGATCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAG-
* * * * * **
15074748 CAGCC-AGAGGGGC-GAGATGTGCAAGA-CGAGGATCGAG-CAGGTCCCCCTCTACATGCTGCTG
65 CCGCCTAGAGGGGCAG-GATGCGCAA-ACCGAGGATCG-GCCGGGTCCCCCTCTACGTACTGCCA
* * * * * * * *
15074809 ATCCTGCTACCACAACACTCGGTC-CGATCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAA
127 ATCCTACTATCGCAACCCTCGATCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
15074873 GCCAACTGACGAAACAAACGGACGGGCGGAGGGGCGGGCGGGCACTATGCCGGCCAGAGAGACCA
191 GCCAACCGACG----AAAC-GA---GCGGA--GGCGGGCGGGCGCTACGCCGG-CAGAGAGA-CA
* * * *
15074938 -AATGAGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
244 GGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * *
15075002 GCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
309 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCAAGCCTTCACGTGAAGTTTC
* * * * * *
15075067 ATGGGAAGACGACTCGTTTTCTACTTCTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT
373 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTT
* * * **
15075132 AAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTACC
438 AAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
* *
15075197 ATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
503 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
15075262 TCCCCATATCAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
568 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
15075327 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATACA-GGCCAAGTACCAGCAC
633 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCAC
* * * * * * *
15075391 CCATTGCACATCATGTGTGCGCAC-CCCCTCCGG-CCCCCCAAACGC-GAGAACCCCAATGTCGC
697 CCATCGCACATCATGTGCGCACACACCCC-CCGGCCCCCCCGATCGCTG-GAACCCCAATGCCGT
* * * *
15075453 CGGTCAGGTTCTCCT-ACGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAAAGCGGCACCAGCA
760 CGATCAGGTTCT-CTGGCGATGCTCCG-CGATGGTGCCCCG-AGAAGAAAAATGCGGCACCAACA
* ** **
15075517 CATGCCCGAGCCCAATATGTGCTGCTACAACCCT---T---G---G---TT----T--G---G--
822 TATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAA
15075559 -TCCG-AT-
887 CTCCGTATG
* ** * * *
15075565 CTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACA-AAACGGGCGTACAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-AGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15075629 CCGGCC-AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCC-A-
65 CC-GCCTAGAGGGGCAGGATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAAT
* ** *
15075691 -CAAC-ACTCG---GTC-CGATCT-G----ATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGC
129 CCTACTA-TCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * * * * *
15075745 CAACAGATAAAATGAGCAGGCAGGCGGGCAGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAG
193 CAACCGACGAAACGAGC-GG-AGGCGGGCGGGCGCTACGCCGGC-AGAGAGACAGGATGTGCAAG
* *
15075810 CCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * * *
15075874 TTTTATGGCTTGTAAATTCAAAAAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
320 TTTTATGGCTTGTAAATTCATACAATGG-TCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
15075939 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTCAGGATTTTTGAAAATTTTTC
384 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGA-GATTTTTTAAAATTTTTT
* ** *
15076003 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGATTTGTTGGCATGCACAAAA
448 CGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
15076068 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGACAAAAA-TGTCCCAATTT
513 AAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTT
* *
15076132 TAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15076197 GTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
15076262 TCATGTGCG--CACACCCCCTGGCCCCCCC-ATCGCCGGAACCCCAATGCCG-CCAGTCAGGTTC
707 TCATGTGCGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGA-TCAGGTTC
* * * * * * **
15076323 TCCGACGATGCTCCGGTGATGGTGCCCCG-GCAAAGAAAAATGCAGCACTAGCACGTGCCCGAGC
771 TCTGGCGATGCTCC-GCGATGGTGCCCCGAG--AAGAAAAATGCGGCACCAACATATGCCCGAGC
* * * *** * * *
15076387 CCAGCATGTGCTGTCGTAACCTTCGGTTTGGTCCGATCTTAGACTGGGAATGAATTTCGTATG
833 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
*
15076450 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAATGAGCGTGCG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCG
15076505 CCGATCCTAT
Statistics
Matches: 6171, Mismatches: 736, Indels: 507
0.83 0.10 0.07
Matches are distributed among these distances:
857 1 0.00
858 2 0.00
859 98 0.02
860 14 0.00
861 405 0.07
862 64 0.01
863 497 0.08
864 99 0.02
865 3 0.00
866 3 0.00
867 8 0.00
868 1 0.00
870 40 0.01
871 3 0.00
874 2 0.00
875 88 0.01
876 54 0.01
877 5 0.00
878 634 0.10
879 11 0.00
880 29 0.00
881 90 0.01
882 114 0.02
883 9 0.00
884 7 0.00
885 48 0.01
886 40 0.01
887 236 0.04
888 194 0.03
889 330 0.05
890 79 0.01
891 47 0.01
892 1 0.00
893 1 0.00
894 84 0.01
895 224 0.04
896 387 0.06
897 227 0.04
898 470 0.08
899 149 0.02
900 5 0.00
901 218 0.04
902 22 0.00
903 263 0.04
904 100 0.02
905 5 0.00
906 5 0.00
907 159 0.03
908 93 0.02
909 14 0.00
910 7 0.00
911 477 0.08
912 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
CGCCTAGAGGGGCAGGATGCGCAAACCGAGGATCGGCCGGGTCCCCCTCTACGTACTGCCAATCC
TACTATCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGAGGCGGGCGGGCGCTACGCCGGCAGAGAGACAGGATGTGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATG
CTCCGCGATGGTGCCCCGAGAAGAAAAATGCGGCACCAACATATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15080718 original size:26 final size:26
Alignment explanation
Indices: 15080689--15080741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15080679 CTGGTCCGTT
* *
15080689 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTCGAAATGAACTCCGAATG
*
15080715 CTTAGACTCGAAATGAACTCCGTATG
1 CTTAGACTCGAAATGAACTCCGAATG
15080741 C
1 C
15080742 CTAATTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTCGAAATGAACTCCGAATG
Found at i:15081618 original size:26 final size:26
Alignment explanation
Indices: 15081589--15081641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15081579 CTGGTCCGAT
*
15081589 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15081615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15081641 C
1 C
15081642 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15083368 original size:26 final size:26
Alignment explanation
Indices: 15083339--15083391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15083329 CCAGTTCAAT
* *
15083339 CTTAGGCTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
15083365 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
15083391 C
1 C
15083392 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15084270 original size:26 final size:26
Alignment explanation
Indices: 15084241--15084293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15084231 CTGATCCGAT
* *
15084241 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGCATG
15084267 CTTACACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
15084293 C
1 C
15084294 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:15084288 original size:902 final size:903
Alignment explanation
Indices: 15082462--15087815 Score: 7102
Period size: 903 Copynumber: 6.0 Consensus size: 903
15082452 CCGGTCCGAT
*
15082462 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * *
15082527 CGGCCAGAGGGGTGGGATGCGCAAGCCAGGTATCGGTCGGGTCCCCCTCAGCATGTTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
* * * * * * *
15082592 TGCTGCCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAGCTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
15082657 CCGATGAAACGAGTGGTC-GAGCGGGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGAGCA
196 CCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * * * *
15082721 AGTCGTTGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
15082786 ATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
15082851 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
15082916 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCCTGTATTTTTGTTGGCACGCACAAA
455 TCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
15082981 AAAATTCAGCTAAAAAATCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTT
15083046 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15083111 GTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACT
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
15083176 TCATATGCGCACACCCCCCTGACCCC-CTGATCACCGGAACCCTAATGCC-ACGAGTCAGGTTCT
714 TCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCG-GTCAGGTTCT
* * * * *
15083239 CTGATGATGCTCCGGCAATAGTGCCCCAG-TCAAGAAAAATACGGCACCAACAAATGCCCGAGCC
778 CCGATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGC-GCACCAACAAATGCCCGAGCC
** * * * * * * *
15083303 CAATATGTGCTGCCGCAACCCTCGATC-CAGTTCAATCTTAGGCTGGGAATTAACTCCATATG
842 CAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15083365 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGTCCGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * *
15083430 CGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCAGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
* ** * **
15083494 TGCTGA-CGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCA
131 TGCT-ACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15083558 ACCGACGAAACGACCGGGCGGGCGGGCGGGCTGGCACTACGTCGGCCAGAGAGACAGGATGCGCA
195 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * *
15083623 AGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCGATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
15083688 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
15083753 CGACTCATTTTTTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTT
390 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
15083818 TCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT-GCTATGCTC-A
455 TCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAA
15083881 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATT
*
15083946 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15084011 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCGATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15084076 ATCATGTGTGCACACCCCCCCGGCCCC-CCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
713 ATCATGTGCGCACACCCCCCCGGCCCCTCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
15084140 TCCGATGATGCTCCGACGATGGTGCCCTA-ATGAAGAAAAATGCAGCACCAACAAATACCCGAGC
777 TCCGATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGC-GCACCAACAAATGCCCGAGC
15084204 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15084267 CTTACACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCCTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* *
15084332 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGATCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
* * ** * * * * *
15084397 TACTACCACAACCCTTTGTCAGGTTCGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGACAA
131 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * **
15084462 CCGATTAAACGAGCGGGCAGTCGGGCGGGTGGGCACTACCCCAGCCAGAAAGATGGGATGCGCAA
196 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * * *
15084527 GCCGTGTATCGATAGGGAGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15084592 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATTGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
15084657 GACTCGTTTTCTATTTTTCACAATTTTTGACACTTTTACCGGTTCGGGATTTTTTAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
15084722 CGGAATGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAA
456 CAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15084787 AGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTC
* *
15084851 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * * * *
15084916 TTCTTAAGGTTTGATAAGGGATAACGGGGCCAATAGAAGGG-CAAGTACCAGCACCCATGGCACA
650 TTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
15084980 TCAATGTGCGCAGACCCCCTCTGGCCCC-ACGATCGTCGAAACCCCAATGCCGCC-GTCAGGTTC
714 TC-ATGTGCGCACACCCCC-CCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
15085043 TGCGATGATGCTCCGGCGATGGTGCCCCA-ACGAAGAAAAATGCAGCACCAACAAATACCCGAGC
777 TCCGATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGC-GCACCAACAAATGCCCGAGC
* * *
15085107 CCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15085170 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
15085235 CGGCCAGAAGGGCTGGATGCGCAAGTTGGGGATCGGTCTGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
* * * * *** * **
15085300 TACTATCGTAGCCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAGCTATGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
15085365 CTGACGAAACGAGC--G-A-ACGGGCGGGCGGGTGCTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * * ** *
15085426 GCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTCCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15085491 TTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
15085556 GACTCGTTTTCTATTTATCACGATTTTTGAAAC-TTTT----TAC-GG---------------TT
391 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
15085600 CAGAAAGAGTTTTGGCCCAAAACTTCGTAGACGTGATCCTTGTATTTTTGTTTGGCATGCACAAA
456 CAGAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAA
* *
15085665 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-TTAACCATTTGAAAAAAGTGTCCCTATT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAA-CATTTGAAAAAAGTGTCCCCATT
* *
15085729 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
15085794 AGTTCTCGAGATTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCATCACCCATCACAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15085859 ATCATGTGCGCACACCCCCCCGACCCCTCCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTC
713 ATCATGTGCGCACACCCCCCCGGCCCCT-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
15085924 TCC----A-------GCGATGGTGCCCCAGCT-AAGAAAAATGCGACACCAACACATGCTCGAGC
777 TCCGATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGCG-CACCAACAAATGCCCGAGC
* * * *
15085977 CCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15086040 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
15086105 AGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
*
15086170 TGCTACCGCAACCCGT-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA-GTCCTAAGCC
131 TGCTACCGCAACCC-TCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCC
* * * * * *
15086233 AAACGACGAAACAAGCGGGCAGGCAGGTGAGCGGGCACTACGCCGACCAGAGAGACAGGATGCGC
194 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGC
*
15086298 AAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
15086363 CATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
15086428 ACGACTCGTTTTCTATTTATCACGATTTTTGAAAC-TTTT----TAC-GG---------------
389 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
15086472 TTCAGAAAGAGTTTTGGCCCAAAACTTCGTAGACGTGATCCTTGTATTTTTGTTTGCATGCACAA
454 TTCAGAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
15086537 AAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTT-TTAACCATTTGAAAAAAGTGTCCCTAT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAA-CATTTGAAAAAAGTGTCCCCAT
* *
15086601 TTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
15086666 GAGTTCTCGAGATTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCATCACCCATCACA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
15086731 CATCATGTGCGCACACCCCCCCGACCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTC
712 CATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
15086796 TCC----A-------GCGATGGTGCCCCAGCT-AAGAAAAATGCGACACCAACACATGCTCGAGC
777 TCCGATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGCG-CACCAACAAATGCCCGAGC
* * * *
15086849 CCAGCATGTGCTGCCGTAACCCTCTGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15086912 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * *
15086977 AGGCCAGAGGGGCGGGATGTTCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
*
15087042 TGCTACCGCAACCCGT-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA-GTCCTAAGCC
131 TGCTACCGCAACCC-TCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCC
* * * * * *
15087105 AAACGACGAAACAAGCGGGCAGGCAGGTGAGCGGGCACTACGCCGACCAGAGAGACAGGATGCGC
194 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGC
*
15087170 AAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
15087235 CATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
15087300 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * * **
15087365 TTTGGAAGGAGTTTTGGCAGCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGTTATGCACAA
454 TTCAGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
15087430 AATAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATT
*
15087495 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
15087560 AGTTCTCGAGGTTTGATAAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
15087625 ATCATGTGCGCACA-CCCCCCGGCCCCTCCGATCGTCGGAACTCCAATGCCGCCGGCCAGGTTCT
713 ATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
15087689 CCGATGATGCTCCGGCGATGGTG-CCCATG-TGAAGAAAAATACGGCACCAACACATGCCCGAGC
778 CCGATGATGCTCCGGCGATGGTGCCCCA-GATGAAGAAAAATGC-GCACCAACAAATGCCCGAGC
** * * * *
15087752 CCAGCATGTGCTATCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
841 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
15087815 C
1 C
15087816 CTAAGCCAAC
Statistics
Matches: 4011, Mismatches: 371, Indels: 138
0.89 0.08 0.03
Matches are distributed among these distances:
869 2 0.00
870 282 0.07
871 1 0.00
872 566 0.14
873 239 0.06
874 251 0.06
877 6 0.00
878 52 0.01
879 91 0.02
880 135 0.03
881 10 0.00
892 47 0.01
893 246 0.06
894 5 0.00
896 1 0.00
898 3 0.00
899 185 0.05
900 1 0.00
901 213 0.05
902 584 0.15
903 973 0.24
904 110 0.03
905 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATCC
TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
CAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ATGATGCTCCGGCGATGGTGCCCCAGATGAAGAAAAATGCGCACCAACAAATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15085173 original size:26 final size:26
Alignment explanation
Indices: 15085144--15085196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15085134 CCGATCCGAT
*
15085144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15085170 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15085196 C
1 C
15085197 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15086043 original size:26 final size:26
Alignment explanation
Indices: 15086014--15086066 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15086004 CCGGTCTGAT
*
15086014 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15086040 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15086066 C
1 C
15086067 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15086922 original size:26 final size:26
Alignment explanation
Indices: 15086886--15086938 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15086876 TCGGTCTGAT
*
15086886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15086912 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15086938 C
1 C
15086939 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15090389 original size:26 final size:26
Alignment explanation
Indices: 15090337--15090389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15090327 CTGATCCAAT
* *
15090337 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAAACTGGGAATGAACTCCACATG
*
15090363 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCACATG
15090389 C
1 C
15090390 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCACATG
Found at i:15091273 original size:26 final size:26
Alignment explanation
Indices: 15091237--15091289 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15091227 CTGGTGCAAT
*
15091237 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15091263 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15091289 C
1 C
15091290 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15092167 original size:26 final size:26
Alignment explanation
Indices: 15092138--15092190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15092128 CTGATCCGAT
15092138 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15092164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15092190 C
1 C
15092191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15093089 original size:26 final size:26
Alignment explanation
Indices: 15093037--15093089 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093027 CTGATCTGAT
* *
15093037 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAAACTGGGAATGAACTCCACATG
*
15093063 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCACATG
15093089 C
1 C
15093090 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCACATG
Found at i:15093234 original size:899 final size:900
Alignment explanation
Indices: 15090196--15104537 Score: 16072
Period size: 890 Copynumber: 16.2 Consensus size: 900
15090186 NNNNNNNNNN
* *
15090196 CCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* *
15090261 CCCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
15090326 TCTGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAAACTGGGAATGAACTCCATATGCC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
15090391 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCATGATGTGCAAGCCG
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * ** * * *
15090456 AGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTACCATAACCATTGGTTCAGTCTAA
261 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCAA
* * * *
15090521 TCTGAGACTGGGAATAAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTAG
326 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
* *
15090586 GCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
391 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
15090651 GGCACATTTTCGTATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
456 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
15090716 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
521 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
15090781 CTTTTTGCGGTTCTG-GATTTTTTAAAATTTTTT-GGAAAGGTGTTTTGGTCCCAAACTTGGTAG
586 CTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAG
* * **
15090844 ACGTGATCCTTATATTTTTATTGGCATTTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
649 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15090909 ATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGACAGCAAACC
714 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
15090974 TGTAAAATCTCAAATGCTTTTTAA-GGGGTGTGAGTTCTTGAGGTTTGGTTAGGGATAGGGGGCC
779 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15091038 AATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCCGGC
844 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGAC
* * * * * * * * *
15091096 CCCTCTGATCGCCGGAACCCTATTGCCGCCAGTCAGGTTCTCCGACGATCCTCCAGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
15091161 CCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTCCTACCGCAACCCTCGG
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * *
15091226 TCTGGTGCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
15091291 TAAGTTAACCCAGGAAACGAGCATGCGGGCGCTCAG-TCGGCCAGAGGGACGGGATACGAAAGTC
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGCC
** * * * * * * *
15091355 AAGGATCGATCGGGTCCCCTTCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTTTGCTTCG
260 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCA
* * * * *
15091420 ATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAATCGACGAAATGAACGGGCGGGTGGGAG
325 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCG
* * * * *
15091485 GGCGGGCACTACG-TCGGCCAGAGAGATGGGATGCACAAGCCGTGGATTGATAGGGTGGTTGGTG
386 GGCAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * * * * *
15091549 GGTTTAGGTACATATTTATATTTTTGCGTGCCAATGACATTTTTATGGCTTGTAAATTCATATAG
450 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
15091614 TGGTCCCTTAAGCCTTCACATGAAGATTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTT
515 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * *
15091679 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAATGAGTTTTGGGCCCAAACTTA
580 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
15091744 TTAGACATGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
645 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
15091809 CAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATTGCTACTGGCAGCA
710 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
15091874 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGG
775 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * * *
15091939 GGCCAATATAAGCACCAAGCACCAGCACCCATCTCACATCATGTGCGCACA--CCCCC-AG
840 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
** * * * * *
15091997 CCCCCCGATCGTCGGAACTGCAATGCTGTCGGTCAGGTTCTCCAGCAATGCTCCTGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
** * * *
15092062 CCC-GACGAAGAAAAATGTTGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCG
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
15092126 GCCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
15092191 CTAAGTCAACCCATGAAATGAGTGTGCGGGCACTCAGCTAGCAAGAGGGGCAGGATGCGTAAGCT
195 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * * * * * * * *
15092256 GAGGATCGGTCAGGTTCCCCTCTGCATGTTGCTGATCTTGCTGCCACAACCCTTGGTTTGATCCA
260 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCA
* * * ** *
15092321 ATCTTAGGCTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAGTGGATGGACGGGCA
325 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
**
15092386 GGCACTACGCTGGCCAGAGAGACGGGATAAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
390 GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15092451 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTA
455 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15092516 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTCTGAA
520 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * ** *
15092581 ACTTTTTGTGGTTCGGGATTTTTT-ATTTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
585 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15092645 CGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAAA
650 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15092710 TTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC-
715 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15092774 GATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGGAC
780 G-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
15092839 AATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCCGAC
844 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
*
15092896 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
15092961 CGCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGA
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
15093026 TCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAAACTGGGAATGAACTCCATATGCC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
15093091 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCAGGATGTGCAAGCCG
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * *
15093156 AGGATCGATTGGGTCCCCCTCTGTGTGCTGCCGATCCTACTACCGCAACCCTTGGTTCAGTCCAA
261 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCAA
* * * * *
15093221 TCTGAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCAGGCGGGTAG
326 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
*
15093286 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
391 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15093351 GGCACATCTTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
456 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
15093416 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
521 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
15093481 CTTTTTGCGGTTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGCTAGA
586 CTTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15093545 CATGATCCTTGTATTTTTATTGGCATGTACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGA
650 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15093610 TTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGACAGCAAACCT
715 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15093675 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCTA
780 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15093740 ATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGTGCACA-CCCCCCAAC
845 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * * * * *
15093795 CCCCCCGATCATCGGAAACGCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCTGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
** *** * * *
15093860 CCCAATGAAGAAAAATGTTACACCAGCACAAGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGG
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---
*
15093925 CCTGATCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCT
128 -C-G----G----T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGCATGCT
* * ** *
15093990 TAGACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAATGAGTATGCGGGCACTCAGCTG
170 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
* * * * * * * *
15094055 GCCAGAGGGGCAGGATGCGCAAGCTGAGGATCGGTCAGGTTCCCCTCTGCATGCTGCTGATCTTG
235 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * * * *
15094120 CTGCCACAACCCTCGGCTT-GATCCAATCTTAGGCTGGGAATGAACTCCGTATGCCAAAGCCAAC
300 CTACCGCAACCCTTGG-TTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * **
15094184 CGACAAAACGAGTGGATGGGCGGGTAGGCACTACGCCGGCCAGAGAGACGGGATAAGCAAGCCGT
364 CGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
15094249 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
429 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
** *
15094314 ATGGCGCGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
494 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *** *
15094379 ATTTTCTATTTTTCATGATTTCTGAAACTTTTTGTGGTTCGAGATTTTTTATTTTTTTTTTTGGA
559 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTA-AAATTTTTTCGGA
* * *
15094444 AGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAAT
623 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
15094509 TCAGCTAAAAACTCTAAGTGTACAAAATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGAC
688 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
15094574 ACTTTAATGGCTACTGGCAGCAAAACGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGT
753 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
15094639 CAAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
818 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
**
15094704 TGCGCACACCCCCCCGGG
883 TGCGCACACCCCCCCGAC
* * *
15094722 CCCCCCGATCGCCGGAAGCCCAATGCCGCCGGTAAGG---T-------T-CTCCGGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
15094776 CCCAGCGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
15094841 TCTGATCTGATCTTAGACTGGGAATGAACTCTGCATGCTTAAACTGGGAATGAACTCCATATGCC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
15094906 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCAGGATGTGCAAGCCG
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * * *
15094971 AGGATCAATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGTAACCCTTGGTTCAGTCCAA
261 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCAA
* * * *
15095036 TCTGAGACTGGGAATAAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTAG
326 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
* *
15095101 GCACTACG-TCGGCCTGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
391 GCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15095165 AGCCACATCTTCGTATTTCTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTA
455 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
15095230 CCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTCTTTTTCATGATTTCTGAA
520 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *** * *
15095295 ACTTTTTGTGGTTCGAGATTTTTTATTTTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGG
585 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15095360 CGTGATCCTTGTATTTTTCTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAAA
650 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15095425 TTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCT
715 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15095490 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCA
780 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * *
15095555 ATATATGTG---A-TA--AGTA--CAT-G--C--C--GT-CGGA-A---CCCCAAT
845 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * ** * * * * *
15095591 GCCACCG---GTCAGG---TTC--T-CCGAC-G--A--TTCTCCGACGATTCTCTGACGATGGTG
1 CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * *
15095642 CCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-
65 CCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
15095704 -TC--A---G-TC-----C--------AA-TCCG-AT-CTTAGATTGGGAATGAACTCTGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
15095746 TTAAGTCAACCCATGAAATGAGCATGCAGGCGCTCAG-TCAGCCAGAGGGGTAGGATGCGCGAGC
195 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGC
* * ** ** * *
15095810 CGGGGATCGATCAGGTCCCCTTCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTGCGGTCT
259 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCC
* * * * * *
15095875 AATCTCAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGCAGGCGGACAGGC
324 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGC
* * *
15095940 GGGCGGGCACTACGTCTGG-CAGAGAGACGTGATGCGCATGCCGTGGATCGATAGGGTGGTAGGT
385 GGGCAGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
15096004 TGGTTTAGGCACAGCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
449 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
15096069 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATT
514 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
15096134 TTTGAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTTGAAAGGAGTTTTGGCCCAAAACTT
579 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
15096199 GGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGT
644 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
** * *
15096264 ACAAGATTTTGTGATGATTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGC
709 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
15096329 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTGTCGGGGTTTGATGAGGGATAGG
774 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * ** ** **
15096394 GGGCCAATATAAGGGCCAAGTA-CATGC-CGCCA--G-A-AACCTAAAGCTGC-CA--GTCAGGT
839 GGGCCAATATAAGGGCCAAGTACCA-GCAC-CCATCGCACATCAT-GTGC-GCACACCCCCCCG-
*
15096450 TC
899 AC
* ** * ****** * * ****** * ** **
15096452 TCCGGCGAT-GCTCCG-ATGATGTTGCC-CC-GACGAAG-AAAAATGCG--GCACCAAC-A-CAT
1 CCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTC-AGGTTCTCCGGCGATGCTCCGGCGATGGT
* ** * * * * * * **
15096508 GCCCGAGCCCAG---CATG-TGCTACC-GTA-A-CCCTCGA-TCCAGTC-CGAT-CT-TAG--A-
64 GCCCCAGCGAAGAAAAATGCGGC-ACCAGCACATGCC-CGAGCCCAG-CATG-TGCTGCCGCAAC
* ** *
15096559 -CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA-----C-T-C-----C---------A-
125 CCTCGGTCTG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAAC
* * * *
15096601 ----TATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAAAGGGG-AGGGA
186 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCA-GGA
* * * * * * * ** * * *
15096661 TGCGTAAGTCGGGGATCGATCAGATCCCCTTTTGCGTACTGCTAATCATGCTGCCGCAACCCTCG
250 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTG
* ** ** * *
15096726 GTCCGGTCTGATCTTAGACCAGGATTGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
315 GTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
** * * *
15096791 CGGGCGGGCAGGCAGAACGCTGGCCAGGGAGACGTGATGCGCAAGCTGTGGATCGATAGGGTGGT
380 CGGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
15096856 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
445 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
15096921 TACAGTGGTCCCTTAAGGCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
510 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
15096986 GATTTTTGAAACCTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAATGACTTTTGGCCACA
575 GATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * * *
15097050 AACTTGGTGGACATGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAATTTGA
639 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
15097115 AGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCGGACACTTTAATGGCTACTG
704 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15097180 GTAGCAAACGTGTAAAATCTCAAATGCTCTTT-AGGGTGGTGTGAGTTCTCGAGGTTTGATGAGG
769 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15097244 GATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATCTGTGCACA-CCCCCC
833 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
*
15097308 GGC
898 GAC
* * ** * * *
15097311 CCCCTCGATCG-CTGGAACCCCAATGTCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCG
1 CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * * * * **
15097375 CTCC-G-GTAGAGAAAAATGCAGTACCAGCAAATGCCAGAGCCTAGCATGTGCTGCCATAACCCT
65 CCCCAGCG-A-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
15097438 CAGTC-CAGTCCGATCTTAGACTGGGAATTAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
128 CGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTA
* * *
15097502 TGCCTATGTCAACCCATGAAACGAGCGT--------TCA----G--AGAGGTG--GGATGCGCAA
192 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAA
* * * * * * * * * *
15097551 GCAGGGGATCGACCGGGTCCCCGTCTACATGCTGCCGATCTTGCTGCCACATCCCTCGG-TCTGG
257 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTC-GG
** * * * *
15097615 TCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCTAACTGACGAAACGAGCGCGTGGGCG
321 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GC--GGGCG
* * * * * * * * *
15097680 GGCGGGCGGGCGCTAC-ATCGGTCAAAGAGGCGGGACGTGCAAGCTGTGGATCGATAGGGTGGTA
382 GGCGGGCAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
15097744 GGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCAT
446 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * ** * **
15097809 ACAATGGTCCCTTAAGCCATCACGTGAAATTTCGTGGCAAGACGACTCGTTCCCTACTTTTCATA
511 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
15097874 ATTTTCAAAAC-TTTTGCGGTTCGAGTTTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
576 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
15097938 CTTGATAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
641 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
15098003 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGC
706 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
15098068 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
771 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
15098133 TGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGGC
836 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
*
15098196 CGCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA---T---G-GA----GC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
15098250 CTC-GATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTTG
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * ** * * *
15098314 GTCCGGTCTGATCTTAGACCAGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTTCGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
15098379 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGCCAAAGGGGCGGGATACGCAAGTC
195 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCC
* * *
15098444 GGGGATTCAACCGGGTCCCCCTCTGCGTGCT---G--CC-G-T-----AACCCTT-GTTCCGATC
260 GGGGA-TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTT-CGGTC
* * * * *
15098496 TAATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAATCGATGGAATGAGTGGGCAAGCGGG
323 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAA--A-----CGAGC--G
* * * *
15098561 CGGACGGGCGAGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGG
378 -GG-CGGGCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
15098626 TGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
441 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
15098691 TTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTT
506 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * ** *
15098756 TCAGGATTTTTTAAACTTTTTTCGATTC-AGGATATTTTAAAATTTTTTC-GAAAAATTTTTGGC
571 TCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
15098819 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAC
635 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
15098884 TCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCC
700 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
15098949 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCAAGGTTTGATG
765 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
15099014 AGGGATAGGGGGCCAATATAAGGG-CAACTACCAGCACCCATCGCACATCATGTGCGCAC-CCCC
830 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
15099077 CCAG-G
895 CCCGAC
* * * * *
15099082 CCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTGTCCGACGATGCTCCGGCGTTGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
15099147 CCC-GACGAAGAAAAATGTGGCACCTGCAAATGCCCGAGCCCAACATGTGCTGCTGCAA-CC-C-
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
15099208 -TC-G----G----T-G-C---G---G---TCCG-AT-CCTAGATTGGGAATGAACCCCGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
15099250 CTAAGTCAACCAACGAAATGAGCATGCAGGCGCTCAG-TCGGTCAGAGGGCCGGGATGCACAAGC
195 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGC
* * * * * * * *
15099314 CGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTAGTGCGGTCT
259 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCC
* * * *
15099379 GATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAAAGAGCAGGCGGACGGGC
324 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CGGGC
* * * * * *
15099444 GGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGATCAATAGGCTGGTAGGTG
385 GGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
15099509 GGTTTAGGCATAGCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAA
450 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15099574 TGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
515 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
15099639 TTGAAACTTTTTGCGGTTTGACATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
580 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
15099704 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAACTTCAGCTAAAAACTCGAAGTGT
645 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGT
* * *
15099768 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACCTTAATGGCTATTGGCAGC
709 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
15099833 AAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGATGGATAGG
774 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * *
15099898 GGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-GCCCCCGGA-
839 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
** * *
15099958 CCCCCCGATCGTCGGAACCCC-AT--CATC-GTC-GG---T-CAG-G-TTCTCCGGCGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* ** * * * *
15100012 CCCGGCGAAGAAAAATATGACACCAGCACATGCCCGAGCCTAGCATGTGCGGTCGCAACCCTCGG
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * * *
15100077 TCCGGTCCAATCTTAAACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
15100142 TAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAG-TCGGCCAGAGGGG-ATGGATGTGCAAGC
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCA-GGATGCGCAAGC
* * * * *
15100205 CAGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACCCTTGG-TCTGGTC
259 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTC-GGTC
* * * *
15100269 CAATCTTATACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCAGGCGAGCGGG
323 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGG
* * *
15100334 CGGGC-GGACACTACGCTGACCAGAGAGACGGGACGCGCAAG-CGTGGATTGATAGGGTGGTAGG
384 CGGGCAGG-CACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
15100397 TGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATAC
448 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
15100462 AATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCACGAT
513 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * **
15100526 TTTTGAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAC
578 TTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
15100591 GTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGT
642 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15100656 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
707 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
15100721 GCAAACCTGTAAAATCTCAAATTCTCTTTATGGAGGTGTGAGTTGTCGAGGTTTGATGAGGGATA
772 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
15100786 GGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGC
837 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * *** * **
15100850 CTCCCCGATCGCCGGAACCCCAACATCGCCGGTCAGGTTCTCCGGCGCTGCTCCAACGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * *
15100915 CAC-GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCTTGTACCGTCGCAACCCTCG
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
15100979 GTCTGGTCCGATCTTAGACTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTTCGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** *
15101044 CTAAGTCAACCTA-TAGAACGAGCGTGCGGCCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGC
195 CTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGC
* * * ** * * *** * *
15101108 TGCGGATCGACCGGGTCCCCCTCTGCGTGGCCACCGATCCTACTACCGTAACCCTCAATCCGATC
259 CGGGGATCGATCGGGTCCCCCTCTGCGT-GCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTC
** * *
15101173 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCCGGCGGG
323 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
** * * * *
15101238 TGGGCACTACG-TCGGCCAGAGAGACGTGATGCGCAAGCTGTAGATCGATAGGGTGGTAGTTGGG
388 CAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ***
15101302 TTTAGGCACATCTTCATATTTATATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
452 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
15101367 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGATGACTCGTTTTCTATTTTTCACGATTTTC
517 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
15101432 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAA-AATGTTTTCGCCCCAAACTTGG
582 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGG
15101496 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
646 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
15101561 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
711 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
15101626 ACCTGTAAAATTTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGGGGTTTGATGAGGGCTAGGGG
776 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
15101691 GCCAATATAAGGGTCAAGTACCAGCACCCATCGCACGTCATGTGCGCACA-CCCCCCGAC
841 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * * *
15101750 CCCACCGATCGTTGGAACCCCGAT---G-C--TCA-----------GA--------CGATGATGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
15101790 CCC-GACGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCTGTAA-CC-C-
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
15101851 -TC-G----G---TT---C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCTGTATGC
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15101893 CTAAGTCAACCCACGGAACGAGCGCGCGGGCGTTCAG-TCGGCCAGAGGGGCGGGATGCGCAAGT
195 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGC
* * *
15101957 CGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGG-TCTGGTC
259 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTC-GGTC
** * * * *
15102021 TGATCTTAGATTGGGAATGAACTCTGTATGCCCAACCCAACCGACGAAACGAACAGGCGGGCGGG
323 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG---A-GCGGGCGGG
* * * *
15102086 CGGACGGGAACTA-GGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
384 CGGGCAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * ** *
15102150 TGGTTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCACAC
448 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
15102215 AGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC-AAT-G--GTC-------C-C---
513 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
15102265 --TTG-GA---TTT---G---G-GATTTTTTAAAAATTTTTT-GAAAGGAGTTTTGGCCCCAAAC
578 TTTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
15102316 TTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAAAAAAAAATTCAACTAAAAACTCAAAGT
642 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15102380 ATACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCA
707 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
15102445 GCAAACCTGTAAAATTTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
772 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
15102510 AGGGGCCAATATAAGGGCCAAGTACTAG----CA---C-CA--A--T-CGCACACCCCCCCGGA-
837 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GAC
* * * *
15102561 CCCCCCGATCGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * ** * *
15102626 CCCGGTGAAGAAAAATGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGG
66 CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * ** * *
15102691 TCCGATCTGATCTTAGACTGGGAATGAA-TCCATATGCTTAGACTGGGAATGAACTCTGTATACC
131 TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
15102755 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGATGGGCAGGATACGCAAGCCG
196 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG
* ** * * * *** *
15102820 GGGATC-AGCCAAGTCCCCCTCTACGTG-TCACCGATCCTG-TGA-TGACAACCCTCAATCCGGT
261 GGGATCGA-TCGGGTCCCCCTCTGCGTGCT-GCCGATCCTGCT-ACCG-CAACCCTTGGTTCGGT
* * *
15102881 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCGGGCGGGCGG
322 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGG
* * * *
15102946 GCGGGCTGGCACTATGCTGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGG
383 GCGGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
15103011 TGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
448 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
** * *
15103076 AATGGTCTTTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTTTCACGAT
513 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * *
15103141 TTTCAAAACTTTTTTCGGTTCGAGATTTTTTTAAAA-TTTTTCAGAAGGCA-TTTTGGCCCCTAA
578 TTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAA
* * *
15103204 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTGAGCTAAAAACTCGAAG
641 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
15103269 TGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
706 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
15103334 AGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGCTTGATGAGGGAT
771 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
15103398 AGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAG-T
836 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * * * * * * * *
15103462 CCCCCCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTTTCTGGCAATCCTCTGACGATGGAGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
15103527 CCC-GATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCG
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * *
15103591 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTGGAAAT-AAGCTCTGTATG
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAA-CTCCGTATG
* * * * * * *
15103655 CCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGT
194 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGC
** * * *
15103720 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCC
259 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCC
* * * * * *
15103785 GATCTTAGACTTGGAATGAGCTCTGTATGCCTAATCCAACCGATGAAACGAGTAAGCGGGCGGGC
324 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGCGGGCGGGC
* * * *
15103850 GGGAAGGCACTACG-TCCGCCAGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
385 GGGCAGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
15103914 GGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
449 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
15103979 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
514 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
15104044 TTGGAAACTTTTTACGATTCGAGATTTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
579 TTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
15104109 TTGTAGACGTGATCACTT-TATTTTTGTTGGCATGCACAAAACAATTCACCTAAAAACTCGAAGT
643 TGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
15104173 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
707 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
15104238 GCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGCGATA
772 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
15104303 GGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
837 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
* * * * *
15104367 CACCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCAGCGATGATGC
1 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
15104432 CCC-GACGAAGAAAAATGCAGCACCAGCACCTGCCCGAGCCCAGCATGTGCTACCACAACCCTCG
66 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
15104496 GTTTGATCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTA
130 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTA
15104538 ATCCAACCGA
Statistics
Matches: 11458, Mismatches: 1510, Indels: 943
0.82 0.11 0.07
Matches are distributed among these distances:
810 6 0.00
811 28 0.00
812 2 0.00
813 1 0.00
814 1 0.00
815 2 0.00
816 1 0.00
817 3 0.00
819 2 0.00
823 184 0.02
824 50 0.00
825 12 0.00
828 3 0.00
831 3 0.00
834 1 0.00
835 1 0.00
836 57 0.00
837 3 0.00
838 1 0.00
840 4 0.00
841 175 0.02
842 2 0.00
843 4 0.00
844 4 0.00
845 427 0.04
846 2 0.00
847 2 0.00
848 76 0.01
849 104 0.01
850 4 0.00
851 7 0.00
852 163 0.01
853 6 0.00
854 1 0.00
855 10 0.00
856 430 0.04
857 9 0.00
858 11 0.00
859 16 0.00
860 172 0.02
861 338 0.03
862 18 0.00
863 11 0.00
864 15 0.00
865 70 0.01
866 15 0.00
867 83 0.01
868 4 0.00
869 22 0.00
870 27 0.00
871 89 0.01
872 14 0.00
873 28 0.00
874 365 0.03
875 274 0.02
876 65 0.01
877 4 0.00
878 6 0.00
879 52 0.00
880 7 0.00
881 6 0.00
882 60 0.01
883 111 0.01
884 4 0.00
885 65 0.01
886 351 0.03
887 592 0.05
888 40 0.00
889 364 0.03
890 969 0.08
891 257 0.02
892 25 0.00
893 7 0.00
894 6 0.00
895 3 0.00
896 259 0.02
897 260 0.02
898 7 0.00
899 693 0.06
900 642 0.06
901 863 0.08
902 426 0.04
903 381 0.03
904 545 0.05
905 229 0.02
911 1 0.00
912 2 0.00
915 1 0.00
916 68 0.01
917 1 0.00
921 2 0.00
922 1 0.00
923 3 0.00
924 7 0.00
925 420 0.04
926 254 0.02
927 36 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
CCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCTGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG
GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTTCGGTCCAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC
Found at i:15093972 original size:26 final size:26
Alignment explanation
Indices: 15093936--15094014 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15093926 CTGATCTGAT
*
15093936 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGTATG
15093962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15093988 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15094014 C
1 C
15094015 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15094904 original size:26 final size:26
Alignment explanation
Indices: 15094852--15094904 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15094842 CTGATCTGAT
* **
15094852 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAAACTGGGAATGAACTCCACATG
*
15094878 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCACATG
15094904 C
1 C
15094905 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCACATG
Found at i:15095620 original size:11 final size:11
Alignment explanation
Indices: 15095604--15095637 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
15095594 ACCGGTCAGG
15095604 TTCTCCGACGA
1 TTCTCCGACGA
15095615 TTCTCCGACGA
1 TTCTCCGACGA
*
15095626 TTCTCTGACGA
1 TTCTCCGACGA
15095637 T
1 T
15095638 GGTGCCCCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (11 bp):
TTCTCCGACGA
Found at i:15096582 original size:26 final size:26
Alignment explanation
Indices: 15096553--15096605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15096543 CCAGTCCGAT
* *
15096553 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15096579 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15096605 C
1 C
15096606 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15097488 original size:26 final size:26
Alignment explanation
Indices: 15097452--15097504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15097442 CCAGTCCGAT
* *
15097452 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15097478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15097504 C
1 C
15097505 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15098787 original size:26 final size:26
Alignment explanation
Indices: 15098755--15098806 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15098745 TTTTCTATTT
* *
15098755 TTCAGGATTTTTTAAACTTTTTTCGA
1 TTCAGGATATTTTAAAATTTTTTCGA
15098781 TTCAGGATATTTTAAAATTTTTTCGA
1 TTCAGGATATTTTAAAATTTTTTCGA
15098807 AAAATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.52
Consensus pattern (26 bp):
TTCAGGATATTTTAAAATTTTTTCGA
Found at i:15100124 original size:26 final size:26
Alignment explanation
Indices: 15100088--15100140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15100078 CCGGTCCAAT
15100088 CTTAAACTGGGAATGAACT-TCGTATG
1 CTTAAACTGGGAATGAACTCT-GTATG
*
15100114 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
15100140 C
1 C
15100141 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:15100612 original size:890 final size:887
Alignment explanation
Indices: 15096462--15104537 Score: 9184
Period size: 887 Copynumber: 9.1 Consensus size: 887
15096452 TCCGGCGATG
* * * * *
15096462 CTCCGATGATGTTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
15096527 TACCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
** * * * *
15096592 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAAAGGGGA
131 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * * ** * *
15096657 GGGATGCGTAAGTCGGGGATCGATCAGATCCCCTTTTGCGTACTGCTAATCATGCTGCCGCAACC
196 GGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
** *
15096722 CTCGGTCCGGTCTGATCTTAGACCAGGATTGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
261 CTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
15096787 CGGGCGGGCGGGCAGGCAG-A--ACGCTGGCCAGGGAGACGTGATGCGCAAGCTGTGGATCGATA
326 CAGGCGGGCGGGCGGGCGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC-GTGGATCGATA
15096849 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
390 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
15096914 AAATTCATACAGTGGTCCCTTAAGGCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
455 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
15096979 TTTTCACGATTTTTGAAACCTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAATGACTTTT
520 TTTTCACGA-TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* * * * *
15097043 GGCCACAAACTTGGTGGACATGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAA
583 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * * * *
15097108 AATTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCGGACACTTTAATG
648 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
15097173 GCTACTGGTAGCAAACGTGTAAAATCTCAAATGCTCTTT-AGGGTGGTGTGAGTTCTCGAGGTTT
713 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGTGAGTTCTCGAGGTTT
* * *
15097237 GATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATCTGTGCACA
777 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-
* *
15097302 CCCCCCGGCCCCCTCGATCG-CTGGAACCCCAAT-GTCATCGGTCAGGTT
841 CCCCCCGGCCCCC-CGATCGTC-GGAACCCC-ATCATCGTCGGTCAGGTT
* * * *
15097350 CTCCGACGATGCTCCGACGATGGCGCTCCG--GTAGAGAAAAATG-CAGTACCAGCAAATGCCAG
1 CTCCGACGA---T--G--G-T-GC-C-CCGACG-A-AGAAAAATGTGA-CACCAGCACATGCCCG
* ** * * * *
15097412 AGCCTAGCATGTGCTGCCATAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATTAACTTCGTAT
52 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
15097477 GCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGT--------TCA-
117 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15097533 ---G--AGA--GGTGGGATGCGCAAG-CAGGGGATCGACCGGGTCCCCGTCTACATGCTGCCGAT
182 CCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
* * *
15097590 CTTGCTGCCACATCCCTCGGTCTGGTCTGATCTTAGAC-TGAGAATGAAC-TCTGTATGCCTAAG
246 CCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTTG-GAATGAACTTC-GTATGCCTAAG
* * * * * * * * *
15097653 CTAACTGACGAAACGAGC-GCGTGGGCGGGCGGGCGGGCGCTAC-ATCGGTCAAAGAGGCGGGAC
309 CCAACCGACGAAACGAGCAG-GCGGGCGGGCGGGC-GGCACTACGCT-GGCCAGAGAGACGGGAT
* **
15097716 GTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
371 GCGCAAGC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * *
15097781 ATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAATTTCGTGG
435 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
** * ** * * *
15097846 CAAGACGACTCGTTCCCTACTTTTCATAATTTTCAAAAC-TTTTGCGGTTCGAGTTTTTTTAAAA
500 CAAGACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * *
15097910 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGATAGTCGTGATCCTTGTATTTTTTTTGGCATGC
564 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
15097975 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
629 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
15098040 CATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
694 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
15098105 TGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
759 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
15098170 GCACATCATGTGCGCACCCCCCCGGCCGCCCCGATCGTCGGAACCCCA--ATGCCGCCGGTCAGG
824 GCACATCATGTGCGCACCCCCCCGGCC-CCCCGATCGTCGGAACCCCATCAT--CGTCGGTCAGG
15098233 TT
886 TT
* * * * *
15098235 CTCCGGCGATGGAGCCTCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * ** *
15098300 TGCCCCAACCCTTGGTCCGGTCTGATCTTAGACCAGGAATGAACTCCGTATGCTTTGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
15098365 TGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTCAGCCGGCCAAAGGGG
131 TGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* *
15098429 CGGGATACGCAAGTCGGGGATTCAACCGGGTCCCCCTCTGCGTGCT---G--CC-G-T-----AA
195 CGGGATGCGCAAGTCGGGGA-TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAA
* * * * * * *
15098482 CCCTTGTTCCGATCTAATCTTAGAC-TGGCAATGAACTCCGTATGCCTAAGCCAATCGATGGAAT
259 CCCTCGGTCCGGTCTGATCTTAGACTTGG-AATGAACTTCGTATGCCTAAGCCAACCGA-CGAA-
* * * * * *
15098546 GAGTGGGCAAGCGGGCGGACGGGCGAGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
321 -A-----CGAGCAGGCGGGCGGGCGGGC-GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG-
* * * *
15098611 CATGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
378 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
15098676 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGA
443 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
15098741 CTCGTTTTCTATTTTTCAGGATTTTTTAAACTTTTTTCGATTC-AGGATATTTTAAAATTTTTTC
508 CTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC
* * *
15098805 GAAA-AATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
571 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
15098869 AATTTAGCTAAAAACTCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCA
636 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
15098934 GACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGT
701 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
15098999 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAACTACCAGCACCCATCGCACATC
766 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
15099063 ATGTGCGCACCCCCCCAGGCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTGTCCGAC
831 ATGTGCGCACCCCCCC-GGCCCCCCGATCGTCGGAACCCC-AT--CATCG-TC--G--GT-C-A-
* *
15099128 GATG
884 GGTT
* * * * * *
15099132 CTCCGGCGTTGGTGCCCCGACGAAGAAAAATGTGGCACCTGCAAATGCCCGAGCCCAACATGTGC
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
* *
15099197 TGCTGCAACCCTCGGTGCGGTCCGATC-----C------T--A----G-A----T----TGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * * * * *
15099236 TGAACCCCGTATGCCTAAGTCAACCAACGAAATGAGCATGCAGGCGCTCAGTCGGTCAGAGGGCC
131 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** * * *
15099301 GGGATGCACAAGCCGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
196 GGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
** * * * * * *
15099366 CTTAGTGCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAAAGAG
261 CTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * *
15099431 CAGGCGGACGGGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGATCAAT
326 CAGGCGGGCGGGCGGGC-GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGAT
* * * *
15099496 AGGCTGGTAGGTGGGTTTAGGCATAGCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTG
389 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
*
15099561 TAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
454 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
15099626 TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGACATTTTTTAAAATTTTTTCGGAAGGAGTTTT
519 TTTTTCACGA-TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
*
15099691 AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAACTTCAGCTAA
583 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAA
* *
15099755 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACCTTAAT
647 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
15099820 GGCTATTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTT
712 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** *
15099885 GATGATGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACG
777 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACC
15099950 CCCCCGGACCCCCCGATCGTCGGAACCCCATCATCGTCGGTCAGGTT
842 CCCCCGG-CCCCCCGATCGTCGGAACCCCATCATCGTCGGTCAGGTT
* * * *
15099997 CTCCGGCGATGGTGCCCCGGCGAAGAAAAATATGACACCAGCACATGCCCGAGCCTAGCATGTGC
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
15100062 GGTCGCAACCCTCGGTCCGGTCCAATCTTAAACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
15100127 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGTCGGCCAGAGGGGA
131 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
15100192 TGGATGTGCAAGCCAGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCACAACC
196 GGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
* * ** * *
15100257 CTTGGTCTGGTCCAATCTTATACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAG
261 CTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
15100322 CAGGCGAGCGGGCGGGCGGACACTACGCTGACCAGAGAGACGGGACGCGCAAGCGTGGATTGATA
326 CAGGCGGGCGGGCGGGCGG-CACTACGCTGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATA
* *
15100387 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTACGGCTTGT
390 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
15100452 AAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTAT
455 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
15100516 TTTTCACGATTTTTGAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTT
520 TTTTCACGA-TTTTG-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
* *
15100581 GGCCCCAAACGTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
583 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
15100646 AACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATG
648 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
15100711 GCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTATGGAGGTGTGAGTTGTCGAGGTTTG
713 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
15100776 ATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACAC
778 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CAC
* * *
15100841 CCCCCCGGCCTCCCCGATCGCCGGAACCCCAACATCGCCGGTCAGGTT
841 CCCCCCGGCC-CCCCGATCGTCGGAACCCCATCATCGTCGGTCAGGTT
* *
15100889 CTCCGGCGCTGCTCCAACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
1 CT----C-C-G-----ACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGC
* * * * * * *
15100954 CCAGCTTGTACCGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGCATGCT
55 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
15101019 TAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCTA-TAGAACGAGCGTGCGGCCGCTCAGC
120 TAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGC
* * **
15101082 CAGCCAGAGGGGCGGGATGCGCAAG-CTGCGGATCGACCGGGTCCCCCTCTGCGTGGCCACCGAT
183 CGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGACCGGGTCCCCCTCTGCGT-GCTGCCGAT
* * ** ** * * *
15101146 CCTACTACCGTAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
246 CCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCC
* * * * *
15101211 AACCAACGAAACGAGCGGGCCGGC-GG-GTG-GGCACTACG-TCGGCCAGAGAGACGTGATGCGC
311 AACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * * ***
15101272 AAGCTGTAGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTATATGTGCCAATGC
375 AAGC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
15101337 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAG
439 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
15101402 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
504 ACGACTCGTTTTCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
15101467 TTCAGAAA--ATGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
568 TTC-GAAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
15101530 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
631 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
15101595 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGAGGGTG
696 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
15101660 TGAGTTCTCGGGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGC
761 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
15101725 ACGTCATGTGCGCACACCCCCCGACCCCACCGATCGTTGGAACCCC--GAT-G-C--TCA----
826 ACATCATGTGCGCAC-CCCCCCGGCCCC-CCGATCGTCGGAACCCCATCATCGTCGGTCAGGTT
* * *
15101779 ----GACGATGATGCCCCGACGAAGAAAAATG-CAGCACCAGTACATGCCCGAGCCCAGCATGTG
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATGCCCGAGCCCAGCATGTG
* *
15101839 CTGCTGTAA-CC-C--T-C-G---G---TT---C--GG--T---CT--G-AT-CTTAGACTGGGA
65 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * *
15101878 ATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGCGCGGGCGTTCAGTCGGCCAGAGGGG
130 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
15101943 CGGGATGCGCAAGTCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACCGCAAC
195 CGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
* * *
15102008 CCTCGGTCTGGTCTGATCTTAGA-TTGGGAATGAAC-TCTGTATGCCCAACCCAACCGACGAAAC
260 CCTCGGTCCGGTCTGATCTTAGACTT-GGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAAC
* * * *
15102071 GAACAGGCGGGCGGGCGGACGGGAACTA-GGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
323 GAGCAGGCGGGCGGGCGGGC-GGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG-CGTGGAT
* * **
15102135 CGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGG
385 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * * *
15102200 CTTGTAAATTCACACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC-AAT-G--G
450 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
*
15102261 TC-------C-C----TTG-GA---TTT---G---G-GATTTTTTAAAAATTTTTT-GAAAGGAG
515 TCTATTTTTCACGATTTTGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGAAAGGAG
* *
15102302 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAAAAAAAAATTCAAC
579 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
15102366 TAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTT
644 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
15102431 AATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGG
709 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
15102496 TTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAG----CA-C-CA-ATC----GCAC
774 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
15102550 ACCCCCCCGGACCCCCCGATCGTCGGAACCCCAATGC-TGCCAGTCAGGTTCTCCAGCGATG
839 ACCCCCCCGG-CCCCCCGATCGTCGGAACCCC-AT-CAT--C-GTC-GG---T-CAG-G-TT
** *
15102611 CTCCGACGATGGTGCCCCGGTGAAGAAAAATGT-AGCACCAGCACATGCTCGAGCCCAGCATGTG
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
15102675 CTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAA-TCCATATGCTTAGACTGGGA
65 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
15102739 ATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCAGATGGG
130 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ** * * **
15102804 CAGGATACGCAAGCCGGGGATC-AGCCAAGTCCCCCTCTACGTG-TCACCGATCCTG-TGATGAC
195 CGGGATGCGCAAGTCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCT-GCCGATCCTGCTG-CCAC
** ** * * * *
15102866 AACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAA
257 AACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
* * * *
15102931 TGAGCGGGCGGGCGGGCGGGCTGGCACTATGCTGGCCAGAGAGACGGGATGCACAAGCTGTGGAT
322 CGAGCAGGCGGGCGGGCGGGC-GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC-GTGGAT
*
15102996 CGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
385 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
** * *
15103061 CTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGTTT
450 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
15103126 TCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTTAAAA-TTTTTC-AGAAGG
515 TCTATTTTTCACGATTTT-GAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGA-AAGG
* * * *
15103189 CA-TTTTGGCCCCTAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTG
577 -AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
15103253 AGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
641 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
15103318 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCA
706 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
15103382 AGGCTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
771 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * ** * *
15103447 AGCACACCCCCCAGTCCCCCCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTTTCTGGCAATC
836 CGCAC-CCCCCC-GGCCCCCCGATCGTCGGAACCCC-AT--CATCG-TC-GG---TCAGG---TT
* * * ** * *
15103512 CTCTGACGATGGAGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGC
1 CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
15103577 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTGGAAA
66 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
15103642 T-AAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTCAGCCGACCAGAGGGG
131 TGAA-CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
15103706 CGGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAAC
195 CGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
* * * * *
15103771 CCTCGGTTCGGTCCGATCTTAGACTTGGAATGAGC-TCTGTATGCCTAATCCAACCGATGAAACG
260 CCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACG
* * * * * *
15103835 AGTAAGCGGGCGGGCGGGAAGGCACTACG-TCCGCCAGAGAGACGGGACGTGCAAGCCGTGGATC
324 AGCAGGCGGGCGGGCGGG-CGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG-CGTGGATC
*
15103899 GATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
386 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
15103964 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
451 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
15104029 CTATTTTTCACGATTTTGGAAACTTTTTACGATTCGAGATTTTTTGAAAATTTTTTCGGAAGGAG
516 CTATTTTTCACGATTTT-GAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGAAAGGAG
* * *
15104094 TTTTGGCCCCAAACTTTGTAGACGTGATCACTT-TATTTTTGTTGGCATGCACAAAACAATTCAC
579 TTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15104158 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
643 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15104223 TAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGACTTCTCGAG
708 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
15104288 GTTTGATGAGCGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
773 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** *
15104353 CACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGAT
838 --CACCCCCCCGGCC-CCCCGATCGTCGGAACCCC-AT--CATC-GTC-GG---TCAGGT--T
* * *
15104416 GCTCC-AGCGATGATGCCCCGACGAAGAAAAATG-CAGCACCAGCACCTGCCCGAGCCCAGCATG
1 -CTCCGA-CGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGCACATGCCCGAGCCCAGCATG
* * ** * * *
15104479 TGCTACCACAACCCTCGGTTTGATCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTA
63 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
15104538 ATCCAACCGA
Statistics
Matches: 6154, Mismatches: 726, Indels: 599
0.82 0.10 0.08
Matches are distributed among these distances:
811 23 0.00
812 9 0.00
814 1 0.00
816 2 0.00
817 2 0.00
818 2 0.00
819 3 0.00
823 188 0.03
824 48 0.01
825 13 0.00
826 2 0.00
828 1 0.00
831 3 0.00
834 1 0.00
836 62 0.01
837 2 0.00
838 1 0.00
840 2 0.00
841 2 0.00
845 1 0.00
847 2 0.00
848 81 0.01
849 105 0.02
850 6 0.00
851 5 0.00
852 148 0.02
853 5 0.00
855 1 0.00
856 1 0.00
857 1 0.00
858 2 0.00
860 7 0.00
861 321 0.05
862 6 0.00
863 3 0.00
865 83 0.01
866 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
870 22 0.00
871 75 0.01
872 3 0.00
873 7 0.00
874 362 0.06
875 269 0.04
876 65 0.01
877 3 0.00
878 3 0.00
879 49 0.01
880 7 0.00
881 3 0.00
882 62 0.01
883 123 0.02
884 4 0.00
885 47 0.01
886 343 0.06
887 570 0.09
888 54 0.01
889 128 0.02
890 548 0.09
891 250 0.04
892 48 0.01
893 3 0.00
894 6 0.00
895 3 0.00
896 7 0.00
897 85 0.01
898 5 0.00
899 137 0.02
900 61 0.01
901 551 0.09
902 414 0.07
903 376 0.06
904 161 0.03
905 145 0.02
906 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
CTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAG
CAGGCGGGCGGGCGGGCGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCC
CGGCCCCCCGATCGTCGGAACCCCATCATCGTCGGTCAGGTT
Found at i:15101517 original size:901 final size:897
Alignment explanation
Indices: 15099225--15104537 Score: 6392
Period size: 901 Copynumber: 6.0 Consensus size: 897
15099215 GGTCCGATCC
* * * * * * *
15099225 TAGATTGGGAATGAACCCCGTATGCCTAAGTCAA-CCAACGAAATGAGCATGCAGGCGCTCAGTC
1 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAA-GAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** * *
15099289 GGTCAGAGGGCCGGGATGCACAAGCCGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGTCGATCCT
65 GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
15099354 GCTGCCGCAACCCTTAGTGCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAC
130 GCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
15099419 CAACGAAAAGAGCAGGCGGACGGGCGGGCGGGCACTACGCCGACCAGAAAGACGGGATGCGCAAG
195 CGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * * ** *
15099484 CCGTGGATCAATAGGCTGGTAGGTGGGTTTAGGCATAGCTTCATATTTCTGCATGTCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
*
15099549 TTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * *
15099614 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGACATTTTTTAAAATTTTTTC
386 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
15099679 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
451 AGAA-AAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
15099743 AACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
515 AA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
15099808 AGACACCTTAATGGCTATTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTTTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
15099873 TTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
15099938 CATGTGCG--CACGCCCCCGGACCCCCCGATCGTCGGAACCCCATCATCGTCGGTCAGGTTCT-C
709 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAACATCGCCGGTCAGGTTCTCC
* *
15100000 --CG--G-----CGATGGTGCCCCGGCGAAGAAAAAT--ATGACACCAGCACATGCCCGAGCCTA
773 GGCGATGCTCCACGATGGTGCCCCGACGAAGAAAAATGCA-G-CACCAGCACATGCCCGAGCCCA
* * * *
15100054 GCATGTGCGGTCGCAACCCTCGGTCCGGTCCAATCTTAAACTGGGAATGAACTTCGTATGCT
836 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
15100116 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGTCG
1 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCG
** * ** *
15100181 GCCAGAGGGGATGGATGTGCAAGCCAGGGATCGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
66 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * ** * * * * *
15100246 CTGCCACAACCCTTGGTCTGGTCCAATCTTATACTTGGAATGAACTTCGTATGCCTAAGCCAACC
131 CTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
15100311 CACGAAACGAGCAGGCGAGCGGGCGGGCGGACACTACG-CTGACCAGAGAGACGGGACGCGCAAG
196 GACGAAACGAGC--G-G-GCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAG
* * **
15100375 -CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* *
15100439 TTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
15100504 ACTCG-TTTCTATTTTTCACGATTTTTGAAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTT
386 ACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* *
15100568 CA-AAAGGAGTTTTGGCCCCAAACGTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAA
450 CAGAAA--AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15100632 AAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
15100697 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTATGGAGGTGTGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15100762 GTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGTACA
643 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
15100827 TCATGTGCGCACACCCCCCCGGCCTCCCCGATCGCCGGAACCCCAACATCGCCGGTCAGGTTCTC
708 TCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAACATCGCCGGTCAGGTTCTC
* * **
15100892 CGGCGCTGCTCCAACGATGGTGCCACGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
772 CGGCGATGCTCC-ACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * * * * *
15100957 GCTTGTACCGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGCATGCT
836 GCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
15101019 TAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCTATAG-AACGAGCGTGCGGCCGCTCAGC
1 TAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCA-AGAAACGAGCGTGCGGGCGCTCAGC
* * **
15101082 CAGCCAGAGGGGCGGGATGCGCAAGCTGCGGATCGACCGGGTCCCCCTCTGCGTGGCCACCGATC
64 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGT-GCTGCCGATC
* * * * *
15101147 CTACTACCGTAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15101212 ACCAACGAAACGAGCGGGCCGGCGGGTGGGCACTACGTCGGCCAGAGAGACGTGATGCGCAAGCT
193 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
15101277 GTAGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTATATGTGCCAATGCCATTT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* *
15101342 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGATGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
15101407 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
388 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
*
15101472 AAAATGTTTTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
453 AAAA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
15101537 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
15101602 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGAGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
15101667 TCGGGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACGTCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
15101732 GTGCGCACA-CCCCCCGACCCCACCGATCGTTGG------AAC--C-CC-G--A--TGCT----C
712 GTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAACATCGCCGGTCAGGTTCTCCGGC
* *
15101778 -A-G----ACGATGATGCCCCGACGAAGAAAAATGCAGCACCAGTACATGCCCGAGCCCAGCATG
776 GATGCTCCACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
*
15101837 TGCTG-CTGTAA-CC-C--T-C-G---G---TT---C--GG--T---CT--G-AT-CT
841 TGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
15101868 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGCGCGGGCGTTCAGTCG
1 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
15101933 GCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCT
66 GCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * * *
15101997 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCCAACCCAAC
130 GCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
15102062 CGACGAAACGAACAGGCGGGCGGGCGGACGGGAACTAGGTCGGCCAGAGAGACGGGATGCGCAAG
195 CGACGAAACG---A-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
15102127 CCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCAT
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* * *
15102192 TTTTATGGCTTGTAAATTCACACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC-
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * **
15102256 AAT-G--GTC-------C-C----TT--GGA---TTT---G---G-GATTTTTTAAAAATTTTTT
386 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTT
*
15102294 --GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAAAAA
450 CAGAAA--AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
15102356 AAAATTCAACTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15102421 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATCCTCTTTAAGGGGGTGTGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15102486 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAG----CA---C-CA
643 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
15102543 --A--T-CGCACACCCCCCCGGACCCCCCGATCGTCGGAACCCC-A-ATGCTGCCAGTCAGGTTC
708 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAACAT-C-GCCGGTCAGGTTC
* ** * *
15102601 TCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTAGCACCAGCACATGCTCGAGCC
770 TCCGGCGATGCTCC-ACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * *
15102666 CAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAA-TCCATATGCT
834 CAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
15102729 TAGACTGGGAATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * ** * *
15102794 ACCAGATGGGCAGGATACGCAAGCCGGGGATC-AGCCAAGTCCCCCTCTACGTG-TCACCGATCC
66 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGA-CCGGGTCCCCCTCTGCGTGCT-GCCGATCC
* * *
15102857 TG-TGA-TGACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 TGCT-ACCG-CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
15102920 AACTGATGAAATGAGCGGGCGGGCGGGCGGGCTGGCACTATG-CTGGCCAGAGAGACGGGATGCA
192 AACCGACGAAACGAGCGGGCGGGCGGGC--G--GGCACTACGTC-GGCCAGAGAGACGGGATGCG
* * **
15102984 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATG
252 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
** *
15103049 CCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGTTTCATCGCAA
317 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
15103114 GATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTTTTTAAAA-T
382 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATT
* * *
15103178 TTTTCAG-AAGGCATTTTGGCCCCTAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
446 TTTTCAGAAAAG--TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
15103242 AAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCC
509 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
15103307 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
574 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
15103371 GTGAGTTCTCAAGGCTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
639 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *** *
15103436 CACATCATGTGAGCACACCCCCCAGTCCCCCCGATCGTTGGAACCCCAATGCCGCCGATCAGGTT
704 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAACATCGCCGGTCAGGTT
* * * * * * * * * *
15103501 TTCTGGCAATCCTCTGACGATGGAGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGC
769 CTCCGGCGATGCTC-CACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
* * * *
15103566 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGGATGCT
833 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
15103631 TAGACTGGAAAT-AAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTCAGCC
1 TAGACTGGGAATGAA-CTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
15103695 GACCAGAGGGGCGGGATGCGTAAG-TCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
65 GGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
15103759 TGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTTGGAATGAGCTCTGTATGCCTAATCCAA
129 TGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
15103824 CCGATGAAACGAGTAAGCGGGCGGGCGGGAAGGCACTACGTCCGCCAGAGAGACGGGACGTGCAA
194 CCGACGAAAC--G--AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* **
15103889 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCATGCCAATGCCA
255 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
*
15103954 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
15104019 GACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGATTCGAGATTTTTTGAAAATTTTT
385 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTT
* * *
15104084 TCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCACTT-TATTTTTGTTGGCATGCACAA
449 TCAGAA-AAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAA
* *
15104148 AACAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
512 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15104213 TCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15104278 ACTTCTCGAGGTTTGATGAGCGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCAC
642 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*** *
15104343 ATCATGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCT
707 ATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAACATCGCCGGTCAGGTTCT
* * *
15104408 CCGGTGATGCTCCAGCGATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACCTGCCCGAGCCC
771 CCGGCGATGCTCCA-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
** * ** * * *
15104473 AGCATGTGCTACCACAACCCTCGGTTTGATCCGATCTTAGGCTAGGAATGAACTCCGTATGCT
835 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
15104536 TA
1 TA
15104538 ATCCAACCGA
Statistics
Matches: 3812, Mismatches: 431, Indels: 344
0.83 0.09 0.07
Matches are distributed among these distances:
810 6 0.00
811 18 0.00
812 4 0.00
813 1 0.00
815 1 0.00
816 2 0.00
818 1 0.00
819 2 0.00
820 2 0.00
821 1 0.00
823 189 0.05
824 48 0.01
825 15 0.00
828 1 0.00
829 1 0.00
830 1 0.00
831 4 0.00
834 1 0.00
836 61 0.02
837 3 0.00
838 1 0.00
840 2 0.00
841 2 0.00
845 1 0.00
848 79 0.02
849 103 0.03
850 4 0.00
851 5 0.00
852 162 0.04
853 4 0.00
855 1 0.00
856 1 0.00
857 14 0.00
858 3 0.00
859 1 0.00
860 8 0.00
861 311 0.08
862 2 0.00
863 3 0.00
865 2 0.00
866 1 0.00
869 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 3 0.00
875 57 0.01
877 2 0.00
879 1 0.00
880 1 0.00
882 4 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 7 0.00
889 120 0.03
890 529 0.14
891 226 0.06
892 51 0.01
893 3 0.00
894 3 0.00
895 2 0.00
896 1 0.00
897 3 0.00
899 3 0.00
900 57 0.01
901 552 0.14
902 407 0.11
903 370 0.10
904 170 0.04
905 144 0.04
906 14 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
CTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAA
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAACATCGCCGGTCAGGTTCTCCGGCGATGC
TCCACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:15104005 original size:902 final size:901
Alignment explanation
Indices: 15102275--15104537 Score: 3208
Period size: 902 Copynumber: 2.5 Consensus size: 901
15102265 TTGGATTTGG
*
15102275 GATTTTTTAAAAATTTTT-TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
1 GATTTTTTAAAAATTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
15102339 TTT-TTGGCATGCAAAAAAAAATTCAACTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTG
65 TTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
15102403 AAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATC
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
15102468 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGT
* * *
15102533 ACTAG----CA-C-CA-ATC--G-CA-CAC-CCCCCCGGACCCCCCGATCGTCGGAACCCCAATG
259 ACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAGACCCCCCGATCGTCGGAACCCCAATG
* * * * *
15102586 CTGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTAGCACCA
324 CCGCCAGTCAGGTTCTCCGGCGATGCT-CGACGATGGAGCCCCGATGAAGAAAAATGCAGCACCA
* *
15102651 GCACATG-CTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
388 GCACATGCCT-GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
* * * *
15102715 TGAA-TCCATATGCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGT
452 TGAACTCCGTATGCTTAGACTGGAAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGC
*
15102779 GCGGGTGCTCAGCCGACCAGATGGGCAGGATACGCAAGCCGGGGATCAGCCAAGTCCCCCTCTAC
517 GCGGGTGCTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGGGATCAGCCAAGTCCCCCTCTAC
**
15102844 GTGTCACCGATCCTGTGATGACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
582 GTGTCACCGATCCTGTGACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
* * ** ** * *
15102909 ATGCCTAAGCCAACTGATGAAATGAGCGGGCGGGCGGGCGGGCTGGCACTATGCTGGCCAGAGAG
647 ATGCCTAAGCCAACCGATGAAACGAGCAAGCGGGCGGGCGGGAAGGCACTACGCTCGCCAGAGAG
* * *
15102974 ACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTG
712 ACGGGACGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
**
15103039 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGT
777 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
15103104 TTCATCGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGA
842 TTCATCGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGA
* * *
15103164 GATTTTTTTAAAATTTTTCAGAAGGCA-TTTTGGCCCCTAACTTGGTAGACATGATCCTTGTATT
1 GATTTTTTAAAAATTTTTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
15103228 TTTGTTGGCATGCAAAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTG
65 TTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
15103293 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
15103358 CTCTTTAA-GGGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGT
* *
15103422 ACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAGTCCCCCCGATCGTTGGAACCCCAATG
259 ACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAGACCCCCCGATCGTCGGAACCCCAATG
* * * * * *
15103487 CCGCC-GATCAGGTTTTCTGGCAATCCTCTGACGATGGAGCCCCGATGAAGAAAAATACGGCACC
324 CCGCCAG-TCAGGTTCTCCGGCGATGCTC-GACGATGGAGCCCCGATGAAGAAAAATGCAGCACC
*
15103551 AGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
387 AGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
* *
15103616 TGAACTCCGGATGCTTAGACTGGAAAT-AAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
452 TGAACTCCGTATGCTTAGACTGGAAATGAA-CTCTGTATACCTAAGTCAACCCACGAAACGAGCG
* * * * * ** *
15103680 CGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTG
516 CGCGGGTGCTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGGGATCAGCCAAGTCCCCCTCTA
** ** * * * *
15103745 CGTG-CTGTCGATCCTGCT-ACCACAACCCTCGGTTCGGTCCGATCTTAGACTTGGAATGAGCTC
581 CGTGTC-ACCGATCCTG-TGACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTC
* * *
15103808 TGTATGCCTAATCCAACCGATGAAACGAGTAAGCGGGCGGGCGGGAAGGCACTACG-TCCGCCAG
644 CGTATGCCTAAGCCAACCGATGAAACGAGCAAGCGGGCGGGCGGGAAGGCACTACGCT-CGCCAG
** *
15103872 AGAGACGGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATT
708 AGAGACGGGACGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
15103937 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
773 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* **
15104002 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGATTCGA
838 AAGTTTCATCGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGA
* * *
15104066 GATTTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCACTT-TAT
1 GATTTTTT-AAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTAT
* * *
15104130 TTTTGTTGGCATGCACAAAACAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
64 TTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
15104195 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
15104260 GCTTTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGCGATAGGGGGCCAAAATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* * *
15104325 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCACCCCGATCGTCGGAACCCCAA
258 TACCAGCACCCATCGCACATCATGTGAGCACACCCCCCAGACC-CCCCGATCGTCGGAACCCCAA
* * *
15104390 TGCCGCCAGTCAGGTTCTCCGGTGATGCTCCAGCGAT-GATGCCCCGACGAAGAAAAATGCAGCA
322 TGCCGCCAGTCAGGTTCTCCGGCGATGCTCGA-CGATGGA-GCCCCGATGAAGAAAAATGCAGCA
* * * ** * * *
15104454 CCAGCACCTGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTTTGATCCGATCTTAGGCTAGG
385 CCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGG
15104519 AATGAACTCCGTATGCTTA
450 AATGAACTCCGTATGCTTA
15104538 ATCCAACCGA
Statistics
Matches: 1216, Mismatches: 125, Indels: 50
0.87 0.09 0.04
Matches are distributed among these distances:
888 3 0.00
889 113 0.09
890 128 0.11
893 2 0.00
894 1 0.00
895 2 0.00
896 3 0.00
898 1 0.00
899 1 0.00
900 5 0.00
901 147 0.12
902 396 0.33
903 176 0.14
904 93 0.08
905 144 0.12
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (901 bp):
GATTTTTTAAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGAGCACACCCCCCAGACCCCCCGATCGTCGGAACCCCAATGCC
GCCAGTCAGGTTCTCCGGCGATGCTCGACGATGGAGCCCCGATGAAGAAAAATGCAGCACCAGCA
CATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGAAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGCGCGG
GTGCTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGGGATCAGCCAAGTCCCCCTCTACGTGT
CACCGATCCTGTGACCACAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGATGAAACGAGCAAGCGGGCGGGCGGGAAGGCACTACGCTCGCCAGAGAGACGG
GACGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TCGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGA
Found at i:15106122 original size:26 final size:26
Alignment explanation
Indices: 15106071--15106123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106061 CCAGTCTGAT
* *
15106071 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15106097 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15106123 C
1 C
15106124 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15107873 original size:26 final size:26
Alignment explanation
Indices: 15107837--15107892 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15107827 CTGATCCGAT
*
15107837 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAACGAACACCATATG
* *
15107863 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACACCATATG
15107889 CTTA
1 CTTA
15107893 AGACAACACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACACCATATG
Found at i:15108007 original size:185 final size:185
Alignment explanation
Indices: 15107678--15108039 Score: 431
Period size: 185 Copynumber: 2.0 Consensus size: 185
15107668 CCGGTCCGAT
* * * * * *
15107678 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAACGAACTCCGTATGCCTAAGACAACACACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
15107743 CGAATAGAGTGGTGGGATGCGCAAGTCGGAGATCGACCGGATCCCTCCCTGTGTGCTACCGATCC
66 CGAACAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCAGATCCCTCCCTGCGTGCTACCAATCC
** *
15107808 TACTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACACCATATG
131 TACTGCAACAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACACCATATG
* * * *
15107863 CTTAGACTGGGAACGAACTCCGTATGCTTAAGACAACACACGAAATGAGCGTGTGGGCACTCAGT
1 CTTAGACTGGGAACGAACTCCGTATGCCTAAGACAACACACGAAACGAGCGTGCGGGCACTCAGC
** * *
15107928 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCA-AGTCCC-CCTCTGCGTGCTACCAAT
66 CGAACAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCAGA-TCCCTCC-CTGCGTGCTACCAAT
* * * * *
15107991 CCTGCTGCAACAACCCTCAATCTGGTCTGATCTTAGATTGGGAGTGAAC
129 CCTACTGCAACAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAAC
15108040 TCCGTATACC
Statistics
Matches: 146, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
184 3 0.02
185 143 0.98
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAACGAACTCCGTATGCCTAAGACAACACACGAAACGAGCGTGCGGGCACTCAGC
CGAACAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCAGATCCCTCCCTGCGTGCTACCAATCC
TACTGCAACAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACACCATATG
Found at i:15109555 original size:876 final size:868
Alignment explanation
Indices: 15107863--15109633 Score: 2573
Period size: 876 Copynumber: 2.0 Consensus size: 868
15107853 ACACCATATG
* * * * * *
15107863 CTTAGACTGGGAACGAACTCCGTATGCTTAAGACAACACACGAAATGAGCGTGTGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACGAAACGAACGTGCGGGCACTCAGC
15107928 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTCTGCGTGCTACCAATCC
* * * * *
15107993 TGCTGCAACAACCCTCAATCTGGTCTGATCTTAGATTGGGAGTGAACTCCGTATACCTAAGCTAA
131 TGCTGCAACAACCCTCAATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAA
* * *
15108058 CCGACGAAACGAACGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGTGCACGCCGTGGA
196 CCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
* * *
15108123 TCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCGAATACCATTTTTATG
261 TCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATA
15108188 GCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
326 GCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
*
15108253 TTTTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
391 TTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
* *
15108318 GTTTTGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAACATTCAG
456 GTTTTGACCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAACATTCAG
* * * * *
15108383 CTAAAAACTTGAAGTGTACAAGATTTTGTGACTATTTGAAAAAGGTGTCCCCATTTCAGACACTT
521 CTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
15108448 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGTGTGAGTTCTCGAGG
586 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGTGTGAGTTCTCGAGG
*
15108513 TTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCACACATCATGTGCGC
651 TTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * * * *
15108578 ACAACCCCCGGGCCCCCTGATCACCGGAACCCTAATGCCGTCGGTCAAGTTCTCCGGTGATGCTC
716 ACAACCCCCGGCCCCCCCGATCACCGGAACCCCAATACCGTCGGTCAAGTTCTCCGGCGATGCTC
* * * **
15108643 CGGCGATTGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGT
781 CAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTAC
*
15108708 C-TAAACCCTCGGTCCAATCCGAT
846 CGT-AACCCTCAGTCCAATCCGAT
* * * **
15108731 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACGAAACGAACGTGCGGGCACTCAGC
* ** * * *
15108796 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTCTGCGTGCTACCAATCC
* *** * *
15108861 TGCTGTC-ATAACCCTTGGTCTAGTCTGATCTTATACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTG-CAACAACCCTCAATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCA
* * * *
15108925 ATCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGGA
195 ACCGACGAAACGA----ACGGGCGGGC--G--GGCACTACGCCGGCCAAAGAGACGGGATGCGCA
* * *
15108990 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACC
* * *
15109055 ATTTTTATATCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATAGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
15109120 CGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTTA-GGTTCGGGATTTTTTAAAATTTT
382 CGACTCATTTTTTATTTTTCACAATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
15109184 TTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAC
446 TTCGAAAGGAGTTTTGACCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACA-
15109249 AAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCAT
510 AAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCAT
* *
15109313 TTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGT
575 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGG-GTGT
* * *
15109378 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTGCCAGCACCCATCACA
639 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* ** *
15109443 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCG-CTGGTCAGGTTC
704 CATCATGTGCGCACAACCCCCGGCCCCCCCGATCACCGGAACCCCAATACCGTC-GGTCAAGTTC
** * * * *
15109507 TCCGGCGATGCTCCAGCGATGGTG-CCCGGTGAAGAAATATGCGGCACCAACTCATGCCTGATCC
768 TCCGGCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
** *
15109571 CAGCATGTGCTACCGTAACCCTCAGTCCGGTCTGAT
833 CAGCATGTGCTACCGTAACCCTCAGTCCAATCCGAT
*
15109607 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15109634 TTAGACTGGG
Statistics
Matches: 799, Mismatches: 90, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
868 176 0.22
869 1 0.00
872 9 0.01
874 1 0.00
876 461 0.58
877 151 0.19
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (868 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACACACGAAACGAACGTGCGGGCACTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTCTGCGTGCTACCAATCC
TGCTGCAACAACCCTCAATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAA
CCGACGAAACGAACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTTATA
GCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
TTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
GTTTTGACCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAACATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGTGTGAGTTCTCGAGG
TTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACAACCCCCGGCCCCCCCGATCACCGGAACCCCAATACCGTCGGTCAAGTTCTCCGGCGATGCTC
CAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTAC
CGTAACCCTCAGTCCAATCCGAT
Found at i:15109893 original size:184 final size:184
Alignment explanation
Indices: 15109578--15110002 Score: 503
Period size: 184 Copynumber: 2.3 Consensus size: 184
15109568 TCCCAGCATG
* * * *
15109578 TGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** * *
15109643 GAATCATCTTCGTTTGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTTAGCCGGCCAGAGG
66 GAATCAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGG
*
15109708 GGCAGGATGCACAAGTCG-GGTATAGGTCGAGTCCCCCGCTGCATGCTACGAGGC
131 GGCAGGATGCACAAGCCGAGG-ATAGGTCGAGTCCCCCGCTGCATGCTACGAGGC
* * *
15109762 TGCTACCGCAACCCTCAATCTAGTCTGATGTTGGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
15109827 GAATGAACTCCGTACGTCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCTAGAGG
66 GAATCAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGG
** * * * * * * * *
15109892 GGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTACTACCGA-TC
131 GGCAGGATGCACAAGCCGAGGATAGGTCGAGTCCCCCGCTGCATGCTA-CGAGGC
* * ** * * *
15109946 TTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 -TGCTACCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15110003 CTAAGGCAAT
Statistics
Matches: 201, Mismatches: 37, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
184 150 0.75
185 51 0.25
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
TGCTACCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATCAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGG
GGCAGGATGCACAAGCCGAGGATAGGTCGAGTCCCCCGCTGCATGCTACGAGGC
Found at i:15110710 original size:26 final size:26
Alignment explanation
Indices: 15110681--15110733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15110671 CCGATCCTAT
15110681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15110707 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15110733 C
1 C
15110734 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15111612 original size:26 final size:26
Alignment explanation
Indices: 15111576--15111628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15111566 CCAGTCCGAT
*
15111576 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15111602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15111628 C
1 C
15111629 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15112158 original size:897 final size:898
Alignment explanation
Indices: 15109770--15115783 Score: 7680
Period size: 897 Copynumber: 6.7 Consensus size: 898
15109760 GCTGCTACCG
* * * * *
15109770 CAACCCTCAATCTAGTCTGATGTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
15109835 TCCGTACGTCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTTAGCCGGCTAGAGGGGTGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * *
15109900 GCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTACGTACTACCGATCTTGCTGCCACAACCCTCGG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGG
* * *
15109965 TCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGCAATCGACGAAACGAGCGGGC
196 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---C
* * * * * * *
15110030 GGACGGGCGGGTGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGTCATAGATCGATAGGAT
258 GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
15110095 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAAT
322 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
15110160 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTT
387 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * * *
15110225 CATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATCTTTTCGGATGGATTTTTGGCC
452 CACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * *
15110289 CCAAACTTTGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACT
516 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
15110354 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
581 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
15110419 CTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAAGGAGTGTGAGTTCTCGAGGTTTGATGA
646 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTTGAGGTTTGATGA
* * * *
15110484 GGGATAGGGGGCAAATATAAGGGCCCAGTACCAGA-ACCCATCACACATCATGTGCGCACACCCG
710 GGGATA-GGGGCCAATATAAGGGCCAAGTACCA-ACACCCATCGCACATCATGTGCGCACACCCC
* * * * * *
15110548 CCCGGCCCCCCCGATCGTTGGAACCCCAATACCGTTGGTCAGGTTCTCCGGTGATGCTTCGGCGA
773 CCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
* * *
15110613 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACTCATGCCTGAGCCCAGCA--TG-TG---
838 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * *
15110668 C-A---TC---C-GATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * ** *
15110725 TCTGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAAAG
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * *
15110790 GCGCAAGCCAGGGATCGGTCGGGTCCACGTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCTG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGG
* * * * *
15110855 TCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAATGA----GC
196 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGGC
* * * * * * *
15110916 TGGTGGGCAGGCACTACGTCGGCCAGAGAGACAGGATGCGTAAGCTGTGGATCGATAGGGTGGTA
261 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
15110981 GGTGGGTTTAGGCACCTCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
326 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
15111046 ACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
391 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
15111111 ATTTTTAAAACTTTTTGTGGTTTGGGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAA
456 ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * *
15111175 CTTGGTAGACATGATACTTTTATTTTTGTTAGCATGCACAAAAAATTTCAGCTAAAAACTCGAAG
521 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
15111240 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
586 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
15111305 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
651 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
* * *
15111370 ACGGGGCCAATATAAGGACCAAGTACCAACACCCATCGCATATCATGTGCGCGCACCCCCCCGGC
715 A-GGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCGGC
** * **
15111435 CCCATCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGC
779 CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * *
15111500 CCTGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCG
844 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* ** *
15111555 TAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
15111620 TCCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGCACTCAGCCGACCAGAAGGGCGGGTT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * ** *
15111685 ACGTAAGCCGGGGATC-GACTGGGTTCCCCTCTGCCTGCTACCGATCTTTCTACTGCAACCCTCT
131 GCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCG
* * ** *
15111749 GTCTGGTCCGATCTTAGA-TCGGGAA-GAACT-CGTATGCCAAAAACAACCGACAAAACGAGCCG
195 GTCCGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCG
* * * * *
15111811 GCGGGCGGGTGAGCACTAAGCCGGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGCGTGG
259 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
15111876 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGATTTGTAAATTC
324 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
15111941 ATATAATGGTCCCTTCAGCCTTTATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
389 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** * * * *
15112006 CAATTTTCCAAACTTTCTGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGCGTTTT-GCCCCA
454 CGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
15112070 AACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGA
519 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
15112135 ACTGTACAAGATTTGGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
584 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
15112200 GCAGGAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGG
649 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGG
* * * *
15112265 ATAAGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCACCG
713 AT-AGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * * * *
15112330 GCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTTAGGTTCTCCGGCGATGCTTCGACAATGGT
777 GCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
* * * * * *
15112395 GCCCTGGCGAAGAAAAATGTGACCCCAGCACATGCCCGAGCCTAGCATGTGCTGCCA
842 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * * * * *
15112452 CAACCCTCGGTCTGATCCAATCTTATACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
15112517 CCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
** * * * * *
15112582 GCGTGAGCCAGGGATCGATCGGGTCCCCCTCTATGTGCTATCGATCCTGCTACCGCAACCCTCGG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGG
* * * *
15112647 TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGT
196 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----
* * * * *
15112712 GAGCGGGGGGCGGGCGGGCACTACGTCGTCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAG
257 ---CGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
15112777 CGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
319 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
15112842 AATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAGGACGACTCGTTTTCTATT
384 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
15112907 TTTCATGATTTTTGAAACTTTTTACGGTTC-ATGATTTTTTAAAATTTTTTCAGAAGGATTTTTG
449 TTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
*
15112971 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAA
513 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * * * *
15113036 ACTCAAAGTGTACAAGATTATGTGACCAATTGAATATAGTGTCCCCATTTCAGACACTTTAAAGG
578 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* **
15113101 CTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGA
643 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTTGAGGTTTGA
* *
15113166 TTAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
707 TGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACC
* *
15113230 CCCCCGGCCCCCCCAATCGTCT-GAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC-A
771 CCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA
* * *
15113293 GCGATGGTG-CCCGGCAAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCA
835 -CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
** * *
15113357 CAACCCTC-AGTCTGGTCAAATCTTATACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAA
1 CAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * ** * * * *
15113421 CTCGGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGCGCTTAGTCGACCAGAGGGGCAGGA
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
15113486 TGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCG
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCG
* * *
15113551 GTCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATG
195 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---
* * *
15113616 CGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAG
257 C-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
15113681 TGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
321 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
15113746 TTCATACAATGGTCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTT
386 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * **
15113811 TCACTATTTCTAAAACTTTTTACGG-TGGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCC
451 TCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
15113875 CCAAACTTGGTAGACGTGATCCTTGTATTTTTG-T----TG-------AAA-T--G---------
516 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
15113916 C-------ACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
581 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
**
15113974 CTGGCAGCAAACAAGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
646 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGA
* *
15114038 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGC
710 GGGATA-GGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCC
* ** * *
15114103 CCGG-CCCCCCGGTCAATGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-AGCGA
774 CCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGA
* * * * *
15114166 TGGTGCCCCGACAAAGAAAAATGCGGCATCAGCACATGCCCGATCCCAGCATGTGCTGTCG
838 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * *
15114227 CAACCTTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTGGGAATGAAC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
15114292 TCCGTATGCCTAAGTCAACCTACGAAACGAGGGTGCGGGCACTCAG-CGGCCAGA-GGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * ** *
15114355 GCACAAGCTGGGGATCGGTCGGGTCCCCCTCTTCATGCTATCGATTGTGCTACCACAACCCTTGG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGG
* * * * *
15114420 TCTGTTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC-AATACGA-----
196 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA-ACGAGCCGG
* * ** * *
15114479 ---GCAGGCGGGCACTATGCTAGCCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGT
260 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
15114541 AGGTGGGTTTAGGCACA-CTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
325 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
15114605 TACAATGGTCCCTTAAGCCTTCACGTGAAGGTTCATGGCAAGACGACTCGTTTTTTATTTTTCAC
390 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * ***
15114670 GATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTC--TCCGA-TTTTGGCCCCAA
455 GATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
15114732 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
520 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * ** * * *
15114797 GTGTACAATATTTTGTGACCATTTGAAAAAAGTGTTCATATTTCAGACACTTTAATGACTGCTGT
585 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
15114862 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGAAGAGGGA
650 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTTGAGGTTTGATGAGGGA
* *
15114927 TAGGGGCGCACTATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACA-CCCCCTGG
714 TAGGGGC-CAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * **
15114991 CCCCTCCGGTTGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG
778 CCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
*
15115056 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCA
843 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * * * * *
15115112 TAACCCTC-ACTCTGGTCCGATTTTAGACTGGGAATGAACTTCATATGCTTA-CCTGGGAATGAG
1 CAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * ** *
15115175 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTAGGCCAGAGGGGTGGGA
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** * * * * *
15115240 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTTTACATGCTGCCGATCCTACTACCGCAACCCTCG
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCG
* ** * * * * *
15115305 ATCCAATCCTATCTTAGATTGGGAATGAACTCCGTATCCCTATGCCAACCGATGAAACGAGCAGG
195 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---
* *
15115370 CTGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
257 C-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
15115435 TGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCGTGCTAATTCCATTTTTATGGCTTGTAAA
321 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
15115500 TTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTTTTTT
386 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
15115565 TCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCC
451 TCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * * * *
15115630 CTAAACTTGGTAGATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTAAAAACT
516 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
15115695 CGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTA
581 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15115760 CTGGCAGCAAACTTGTAAAATCTC
646 CTGGCAGCAAACCTGTAAAATCTC
15115784 TGTATGCTTA
Statistics
Matches: 4440, Mismatches: 567, Indels: 214
0.85 0.11 0.04
Matches are distributed among these distances:
853 41 0.01
854 3 0.00
855 124 0.03
856 91 0.02
858 2 0.00
865 3 0.00
866 1 0.00
867 2 0.00
868 119 0.03
869 158 0.04
870 221 0.05
871 1 0.00
877 2 0.00
880 4 0.00
881 352 0.08
882 205 0.05
883 3 0.00
884 137 0.03
885 244 0.05
886 105 0.02
887 2 0.00
888 2 0.00
889 3 0.00
890 205 0.05
891 3 0.00
893 22 0.00
894 11 0.00
895 166 0.04
896 2 0.00
897 730 0.16
898 98 0.02
899 168 0.04
900 1 0.00
901 70 0.02
902 347 0.08
905 272 0.06
906 285 0.06
907 235 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGGC
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
GGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
CCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
Found at i:15112502 original size:26 final size:26
Alignment explanation
Indices: 15112473--15112525 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15112463 CTGATCCAAT
* *
15112473 CTTATACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACCCCATATG
* *
15112499 CTTAGACTGGGAATGAACCCCTTATG
1 CTTAGACTAGGAATGAACCCCATATG
15112525 C
1 C
15112526 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCATATG
Found at i:15116202 original size:473 final size:473
Alignment explanation
Indices: 15115317--15116256 Score: 1497
Period size: 473 Copynumber: 2.0 Consensus size: 473
15115307 CCAATCCTAT
* * * *
15115317 CTTAGATTGGGAATGAACTCCGTATCCCTATGCCAACCGATGAAACGAGCAGGCTGGCAGGCGGG
1 CTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGACGGG
* *
15115382 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * *
15115447 TTAGGCACATCTTCATATTTCTGCGTGCTAATTCCATTTTTATGGCTTGTAAATTCGTACAATGG
131 TTAGGCACATCTTCAGATTTCTACGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
*
15115512 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTTTTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
* *
15115577 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCTAAACTTGGTA
261 AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTA
* * * *
15115642 GATGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAA
15115707 GATTTTGTAACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTAACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15115772 TTGTAAAATCTCTGTATG
456 CTGTAAAATCTCTGTATG
* **
15115790 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCAGACGGG
1 CTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGACGGG
* * *
15115855 TGGGCACTACGCCGGCCAGAGAGACGGGGTGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15115920 TTAGGCACATCTTTAGATTTCTACGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
131 TTAGGCACATCTTCAGATTTCTACGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
* * * *
15115985 TCCCTTAAGCCTTCATGTGTAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTC
* * *
15116050 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTT-TGAAAGGATTTTTGGCCCCAAACTTGG
260 AAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGG
*
15116114 TAGACGTGATCTTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGATAAAGACTCGAAGTGTAC
324 TAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTAC
* * * *
15116178 AAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAA
389 AAGATTTTGTAACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAA
15116243 ACCTGTAAAATCTC
454 ACCTGTAAAATCTC
15116257 AAATGCTCTT
Statistics
Matches: 426, Mismatches: 39, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
473 336 0.79
474 90 0.21
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (473 bp):
CTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAACGAGCAGGCGGGCAGACGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCAGATTTCTACGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCA
AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGAAGTGTACAA
GATTTTGTAACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCTGTATG
Found at i:15116544 original size:26 final size:26
Alignment explanation
Indices: 15116508--15116560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15116498 CCGGTCTGAT
*
15116508 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15116534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15116560 C
1 C
15116561 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15117589 original size:895 final size:897
Alignment explanation
Indices: 15115790--15117632 Score: 2608
Period size: 895 Copynumber: 2.1 Consensus size: 897
15115780 TCTCTGTATG
* *
15115790 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCAGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GACGGGCAGAC--G
* * *
15115855 TGGGCACTACGCCGGCCAGAGAGACGGGGTGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
61 -GGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15115920 TTAGGCACATCTTTAGATTTCTACGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
125 TTAGGCACATCTTCAGATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGG
* * *
15115985 TCCCTTAAGCCTTCATGTGTAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTT
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
15116050 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGT
255 AAAACTATTTGCAGTTCGAGATTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACTCGAT
* * *
15116115 AGACGTGATCTTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGATAAAGACTCGAAGTGTACAA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAGTCAGATAAAAACTCGAAGTGTACAA
* * * *
15116180 GATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAAAC
385 GATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTCAAAGGCTACTGCCAGCAAAC
* * * *
15116245 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTC
450 CTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGC
* *
15116310 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCG
515 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGACCCCCCCG
* * * * *
15116375 ATCGCTGGAACCCCAATACCACCGGTCAGGTTCTCCGATGATACTCCGGCGATGGTGCCCTGGCG
580 ATCGCTGGAACCCCAATACCACCGGTCAGCTTCTCCGACGATACTCCGGCGACGGTGCCCCGACG
* * ** *
15116440 AAGAAAAATATGACACTAGCACATCCCGAGCCCAGCATGTGCTATCGTGACCCTCGGTCCGGTCT
645 AAGAAAAATATGACACTAGCACAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCT
* * * *
15116505 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
710 GACCTTAGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15116570 CCCACGAAATGAGCGTGCGGGTGCTTAACCGGCCAGAGGGGCAGGATGCACAAGCTAGGGATCGG
775 CCCACGAAAAGAGCGGGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGG
* * * * *
15116635 TCGAGTCCCCTTCTGCGTGCTGCCGATCCTGCTACCATAACCCTTGGTCTGGCCCGAT
840 CCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGCCCGAT
* **
15116693 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGA-ACGGGTGGAC-GGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCAGACGGGGCA
* *
15116756 CTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGC
66 CTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * *
15116821 GCATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCAGATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTT
*
15116886 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGGAAACT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACT
**
15116950 ATTTGTGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTCGATAGACG
261 ATTTGCAGTTCGAGATTTTTTAAAATTTTTT-AGAAAGGAGTTTTGGCCCCAAACTCGATAGACG
* *
15117014 TGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAGTCAGATAAAAACTCGAAGTGTACAAGATT
*
15117079 TTGTGA-CTATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAAAGGCTATTGCCAGCAAACCTA
389 TTGTGACCT-TTTGAAAAAAGTGTCCCCATTTCAGACACTTCAAAGGCTACTGCCAGCAAACCTA
* * *
15117143 TAAAATCTCAAATGCTCTTTAAAGGGTTGTGAGTTCTTGAGGTTTGAAGAGGGGTAGGGGGCCAA
453 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAA
15117208 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAG-CCCCCCCGATC
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGACCCCCCCGATC
* * ** * *
15117271 G-TCGGAACCCCAATGCCACGGGTCAGCTTCTCCGACGATGGTCTGGTGACGGTGCCCCGACGAA
583 GCT-GGAACCCCAATACCACCGGTCAGCTTCTCCGACGATACTCCGGCGACGGTGCCCCGACGAA
* * * * * *
15117335 GAAAAATGTGGCACTAGCACACGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGATCTGAT-TC
647 GAAAAATATGACACTAGCACA-GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCT-
* * *
15117399 GACCTTAGATTGGGAATGAACTCCATATGCTTAGACGGGGAATGAATTTCGTATGCCTAAGTCAA
710 GACCTTAGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * *
15117464 CCCATGAAAAGAGTGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAAGCCGGGGATCG
775 CCCACGAAAAGAGCGGGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCAC-AAGCCAGGGATCG
* * *
15117529 GCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGT-TCGGTCCGAT
839 GCCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCT-GGCCCGAT
* *
15117588 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
15117633 TGAGCAGGTG
Statistics
Matches: 833, Mismatches: 99, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
892 1 0.00
893 81 0.10
894 227 0.27
895 471 0.57
899 7 0.01
903 46 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCAGACGGGGCA
CTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCAGATTTCTACATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACT
ATTTGCAGTTCGAGATTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACTCGATAGACGT
GATCCTTGTATTTTTGTTGGCATGCAAAAAAAAGTCAGATAAAAACTCGAAGTGTACAAGATTTT
GTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTCAAAGGCTACTGCCAGCAAACCTATAA
AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGACCCCCCCGATCGCT
GGAACCCCAATACCACCGGTCAGCTTCTCCGACGATACTCCGGCGACGGTGCCCCGACGAAGAAA
AATATGACACTAGCACAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGACCTT
AGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAAAGAGCGGGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGCCGAGT
CCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGCCCGAT
Found at i:15118272 original size:26 final size:26
Alignment explanation
Indices: 15118243--15118295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118233 ACGGTCCGAT
*
15118243 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15118269 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15118295 C
1 C
15118296 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15120036 original size:26 final size:26
Alignment explanation
Indices: 15120000--15120052 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15119990 CCAGTCCAAT
15120000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15120026 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15120052 C
1 C
15120053 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15120935 original size:26 final size:26
Alignment explanation
Indices: 15120897--15120949 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15120887 TCGGTCCGAT
15120897 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15120923 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15120949 C
1 C
15120950 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15121819 original size:26 final size:26
Alignment explanation
Indices: 15121783--15121835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15121773 CCGGTCCGAT
*
15121783 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15121809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15121835 C
1 C
15121836 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15122715 original size:26 final size:26
Alignment explanation
Indices: 15122679--15122731 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15122669 CTGATTCGAT
15122679 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15122705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15122731 C
1 C
15122732 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15124309 original size:901 final size:901
Alignment explanation
Indices: 15117639--15124603 Score: 8805
Period size: 901 Copynumber: 7.8 Consensus size: 901
15117629 GAAATGAGCA
* * *
15117639 GGTGGTAGATGGGTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCCATTTTTATGGATTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
15117704 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** ** * *
15117769 TTTCACAATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
15117834 -CCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAGAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15117898 CTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
15117963 TACTAGCAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
326 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
15118028 GGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCC
391 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * **
15118093 CCCGACCCCCCCGATCGCCGGAACCCAAATGCCGTCGGTCAAGTTCTCCGGCGATGCTTCTACGA
456 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
* * * * *
15118158 TGGTACCCTGGCGAAGAAAAATGCGGGACCAGCACATGCCCGAGCCCAGCATGTGCTGCCTCCAC
521 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG---CCAC
* *
15118223 AACCCTTGGCAC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAAC
583 AACCCTCGGC-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
15118287 TCCATATGCCTAAGTCAACCCATG-AA--A-CGTGCGGACGCTCAACCGGCCAGAGGGGCGGGAT
647 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * *** * *
15118348 GCGCAAGCCAGGGATCGATCGGTTCCCCTTCT-TCGTGCTGTATATTCTGCTGCCGCAACCCTCG
712 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGT-GTGCTGCCGATCCTGCTGTCGCAACCCTCG
* * * * * *
15118412 GTCTGGCCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCGGG
776 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * *
15118477 CGG-GCG-GGCGGGCACTATGCCGGCTAGAGAGACGGGATACGTAAGTCGTGGATCGATAG
841 CGGCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
15118536 GGTGGTAGGTAGGTTGAGGCACATCTTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
15118601 AATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
15118666 TTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTA
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
15118730 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
195 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
15118795 ACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGG
260 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * *
15118860 CTACTGGCAACAAACCTGTAAAATTTGAAATGCTCTTTAAGGGGGCGTGAGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
15118925 TAAGGGATAGGGGACCAATTTAAGGGCCAAGTACCATCACCCATCACACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * ** * *
15118990 CCCCCGGCGCCCCCGATCACTAGAACCCCAATGCCGTCGGTCAGGTTATCCGACGATGCTCCGGC
454 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * * *
15119055 GATGGTGCCCCGAGGAAGAAAAATGTGGCACCAACACATGCCCGAA-CCCAGCATGTGCTACTAC
519 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC-AAGCCCAGCATGTGCTGCCAC
*
15119119 AACCCT-----T-G---G----T---CT--G---G---TCCG-AT-CTTAGACTGAGAATGAACT
583 AACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
15119158 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCAGAGGGGCGAGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * *
15119223 CGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-CTGCAACCCTCGG
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTC-GCAACCCTCGG
* * * *
15119287 TCCGATCCGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC
777 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * * * ** *
15119352 AGGTGGGAAAGCAGGCACTGCGTCAGCCAGAGAGACAGCTTGCGCAAGTCGTGGATCGATAG
842 -GGCGGG-AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
15119414 GGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
15119479 AATACATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGACAACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
15119544 TTTCACGATTTTTGAAACTTTTTGA-GGTTTGGGATTTTTTTAAATTTTTTCCGAAGGAGTTTTC
131 TTTCATGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
15119608 ACCCCAAAATTGGTAGACGTGATCCTTGTATTTTTATTT-GCATGCACAAAAAAATTCAGCTAAA
195 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
15119672 AACTCGATGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATG
259 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
** *
15119737 GCTAAAGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
15119802 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCACGTGCGCACAC
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
15119867 CCCCCGG-CCCCCCGATCGTCGGAACCCC-GTGCCGTCGGTCAGGTTCT-C--CG--G-T-----
454 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * * *
15119919 GA---TGCCCCGACGAAGAAAAATACGGTACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCA
519 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACA
* * * *
15119981 ACCCTCGGTCC-AGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
584 ACCCTCGG-CCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
15120045 CTGTATGCCTAAGTCAACACACGAAGCGAGTGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
** * ** * * * *
15120110 CATAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCGTAACCCTCAGT
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGT
* * * * * *
15120175 CCGGTCCAATCTTAGACCT-TGAATAAACTCCGTATGCCTAAGCCAACCGACGAAATGAAC---A
778 CCGGTCCGATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
15120236 TGC--G-GGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAG
842 GGCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
15120293 GGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
15120358 AATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
15120423 TTTCATGATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGCAATTTTGG
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * *
15120488 CCCTAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTTAAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* **
15120553 CTCGAAGTGTACAACATTTTGTGACCATTTGAAAAATTTGTCCCCATTGT-AGACACTTTAATGG
261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGG
15120617 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * *
15120682 TGAGGGGTAGGAGGCCAATATAAGGGCTAAGTACCGGCACCCATCGCACATCATGTGTGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * ** * * ** *
15120747 CCCCTCGGCCGCCCCGATCGCTGGAACCTTAATGCCGCCGTTCAGGTTCTCTAGTGATGCTCCGG
454 CCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGG
* * * * * *
15120812 TGATGGTGCCCCAATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAT
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAC
* * * *
15120877 AAGCCTCGG-TTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAAC
583 AACCCTCGGCCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
15120941 TCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGTGGCAGGAT
647 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * *
15121006 GCGCAAACCGGGGATCG-GCTGGGTCCCCCTCT-TCATGCTACTGATCCTACTTTTGCAACCCTC
712 GCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGT-GTGCTGCCGATCCTGCTGTCGCAACCCTC
* * * * * * * *
15121069 GGTCCGATCTGATCATAGACTGGGAAGGAACTTCGTATGCCTAAGCCAACCGATGAAACAAACGG
775 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
15121134 GCAGGC---AGGCGAGCACTACGCCGGCTAGAGAGACAGGATACGCAAGCCGTGGATAGATAG
840 GC-GGCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*** *
15121194 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTTTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
15121259 AATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
15121324 TTTCATGATTTTTGAAACTTTTTGCGATTCGATA-TTTTTAAAAGTTTTTTTGGAAGGATTTTTG
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTG
* * * *
15121388 GCCCCAAACTTGCTAGCCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
195 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
15121453 AATCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTG
260 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
15121518 CTACTGGCGGCGAACCTCTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
15121583 TGAGGGATAGGGGGCCAA-ATAAGGGCCAAGT----------A---CACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * ** * *
15121634 CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTTTGGTGATGCTCCGAC
454 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * *
15121699 AATGGTGCCCCAACGAAGAAAAAAGCGGCACCAGCACATG-CCAGAGCCCAGCATGTGCTGCCGC
519 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCA-AGCCCAGCATGTGCTGCCAC
* * * *
15121763 TACCCTTGGCCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
583 AACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
15121828 CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCTAGAGGGGCAGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * ** * *
15121893 CGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGTTGCCAATCCTGCTGTCATAACCCTTGAT
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGT
** * * * *
15121958 CCAATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAC-A-AGTG-G
778 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
15122020 GC---AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
843 GCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* ** *
15122076 GGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGCA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
15122141 AATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
15122206 TTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTTGGAAGGAGTTCTGT
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
15122271 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCGTGGC-CAAAAAATTTCAGCTGAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT-GCACAAAAAAATTCAGCTAAAA
* * *
15122335 ACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAAGTGTCCTCATTTTAGACACTTTAATG
260 ACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
15122400 ACTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGCTTGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
15122465 ATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGTACATCATTTGCGCACAC
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
15122530 CCCCCGGCCCCCCCAATCGCCAGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGGT
454 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * *
15122595 GATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCAC
519 GATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAC
* * * * *
15122659 AACCCTCAGTCTGATTCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACT
583 AACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * ** *
15122724 CCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGAGTGCTCAGCCGGCTAGAGGGGCAAGATA
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
** * * * * * *
15122789 TACAAGCCGGGGATCGACCGGGTCTCCGTCTGTGTCCTGCC-ACTCCTGCTG-CTGCAACCTTTG
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGA-TCCTGCTGTC-GCAACCCTCG
* * *
15122852 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCG-ATGCCTAAGCCAACCGACAAAACGAGC--G
776 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
15122914 -GGC--G-GGTGGGCATTATGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAG
841 CGGCGGGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
15122971 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
15123036 AATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTT-ACCGGCAAGACGACTCGTTTTTCTA
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCG-TTTTCTA
* * * * *
15123100 TTTTTCATGATTTTTTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTT
129 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
15123165 GGCCCCAAACTTGGTAAACGCGATCCTTGTATTTTTTTCGGCATGCACCAAAAAATTCAGCTAAA
194 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * *
15123230 AA-TTGAAGTGTACAAGATTTTGTGACCGTTTGAAACAAGTGTCCCCATTTCAGACACTTTAATG
259 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
15123294 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
324 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* **
15123359 ATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGTACACAC
389 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
** * * * *
15123424 CCGCCCGGCCCCCCCGATCGCCGGAACCCCAACACCGACGGTCAGGTTCTCCGGCGACGCTTCGA
454 CC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGG
* * *
15123489 CGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
518 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCAC
* * * *
15123554 AACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTAGGAATAAACT
583 AACCCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * ** ** ** **
15123619 CTGTATGCCTAAGCCAGCCCACAAAATGAGCGT-TTGGCATTCAATCGGTTAGAGGGGCGGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * *
15123683 CGCAAGGCGGGGATCGGTTGGGTCCCCTTCTGTGTGCTACCGATCCTGCTGTCGTAACCCTCGGT
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGT
*
15123748 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGCG
778 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * *
15123813 GACGGGTAGGCGGGCACTACGCCAGACAGAGAGACGAGATGTGCAAGCCGTGGTTCGATAG
843 G-CGGG-AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * * *
15123874 GGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGCTTGCCAATG-AATTGTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
15123938 AATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGGAAGACGACTCG-TTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
15124002 TTTTACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
131 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * *
15124067 CCCCAAACTGGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTATAAA
196 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
15124132 CTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
261 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
15124197 TACTGCCAGCAAA-CTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGA
326 TACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
15124261 TGAGGGATAGGGCGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCAAGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
15124326 CCCCGGCCCCCCCGATCACCGGAACACCAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGGTG
455 CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCG
*
15124391 ATGGTGCACCCG-CGAAGAGAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACA
520 ATGGTGC-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACA
* ** *
15124455 ACCCTCGGTCC-AGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATG-ACT
584 ACCCTCGG-CCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
15124518 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-C-GCCAGAGGGGCGGGATC
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* *
15124581 CGCAAGCCGAGGATCGATAGGGT
713 CGCAAGCCGGGGATCGATCGGGT
15124604 GGTAGGTGGG
Statistics
Matches: 5240, Mismatches: 697, Indels: 261
0.85 0.11 0.04
Matches are distributed among these distances:
860 1 0.00
861 53 0.01
864 2 0.00
867 1 0.00
869 1 0.00
870 39 0.01
871 4 0.00
872 6 0.00
873 2 0.00
874 140 0.03
875 20 0.00
876 18 0.00
877 10 0.00
878 450 0.09
879 454 0.09
880 8 0.00
881 4 0.00
882 322 0.06
883 133 0.03
884 15 0.00
885 6 0.00
886 318 0.06
887 201 0.04
888 4 0.00
889 1 0.00
890 2 0.00
894 251 0.05
895 437 0.08
896 427 0.08
897 449 0.09
898 269 0.05
899 135 0.03
900 312 0.06
901 593 0.11
902 64 0.01
903 88 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGA
TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAAC
CCTCGGCCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCG
GGAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
Found at i:15124524 original size:25 final size:26
Alignment explanation
Indices: 15124474--15124525 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124464 CCAGTTTGAT
*
15124474 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15124500 CTTAGATTGGGAATG-ACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15124525 C
1 C
15124526 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15125239 original size:26 final size:26
Alignment explanation
Indices: 15125203--15125255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15125193 CCGATCCTAT
15125203 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15125229 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15125255 C
1 C
15125256 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15128451 original size:873 final size:872
Alignment explanation
Indices: 15124574--15131235 Score: 8658
Period size: 868 Copynumber: 7.5 Consensus size: 872
15124564 GCCAGAGGGG
* * *
15124574 CGGGATCCGCAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * *
15124639 ATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCTCTTAAGCCCTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** * *
15124704 TCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTCTGGTTCGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
* *** * * *
15124769 TTAAAATTTTTTTGGAAGGAGTTTTGGTAGCAAATTTGGTAGACGTGATCCTTGTAGTTTTTTTC
196 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
15124834 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
15124899 TGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
15124964 AGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
15125029 CCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCTGATCGCAC-GAACCCCAATGCCGTCG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGC-CGGAACCCCAATGCCGCCG
* ** * * * *
15125093 CTCAGGTTCTCCGACGATGCTCCGGTGATGGTTCCCCGGCGAAGAAAAATACGGGACCAGCACAT
520 GTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
**
15125158 GCCCGAGCCCAGCATGTGCTATCACAACCCTCAGTCCGATCCTATCTTAGACTGGGAATGAACTC
584 GCCCGAGCCCAGCATGTGCTGCCACAACCCTC-G---G---------T---CT-GG--T---CT-
* * * * *
15125223 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGACA
626 --GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
15125288 CTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGC
688 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
* * * * * * * * *
15125353 CAATCCTCCTACCGCAACCCTCGATCCGGACCGATCTTAGACTGGGAATGAACTCCGTATACCTA
753 CGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * * *
15125418 GGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGTACTACG-CTGGCCAGAGAAA
818 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAGGTC-GGCCAGAGAAA
* *
15125473 CGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15125538 GTGCCAATGCCATTTTTATGGCTTGTAAATTCTTGCAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * ** * *
15125603 TCATGGCAAGATGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTTGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
* * *
15125668 TGAAAATTTTTTCGGAAGGATTTTTGGGCCCAAAAC-TGGTAGACGTGATCCTTGTATTTTTTTT
196 TTAAAATTTTTTTGGAAGGATTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
*
15125732 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
15125797 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
15125862 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
** * *
15125927 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCTTCTCGATCGTCGGAACCCCAATGCCGCCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
* * * * **
15125992 GTTAAGTTCTCCGATGATGCTCCGAGGATGGTGCCCC-AGCGAAGAAAAATGCAACACCAGCACA
520 GTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACA
* * * *
15126056 AGCCCGAGCCCAGCATGTGCTGCCATAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACT
583 TGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * *
15126121 CCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * *
15126186 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTCCTACTGCAATCCTCGAT
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* *
15126251 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCG
778 CCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* *
15126316 GACGGGCTGGTGGGCACTACG-CTGGCCAGAGAAA
843 GGCGGGC----GGGCACTAGGTC-GGCCAGAGAAA
* *
15126350 CGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGT
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15126415 GTGCCAATGCCATTTTTATGGCTTGTAAATTCTTGCAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * ** * *
15126480 TCATGGCAAGATGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTTGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
* * *
15126545 TGAAAATTTTTTCGGAAGGATTTTTGGGCCCAAAAC-TGGTAGACGTGATCCTTGTATTTTTTTT
196 TTAAAATTTTTTTGGAAGGATTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
*
15126609 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
15126674 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
15126739 AAAGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGT
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * **
15126804 ACCCATCGCACATCATGTGCGCACACCCCCTGGCCTCCTCGATCGTCGGAACCCTAATGCCATCG
455 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
* * * * *
15126869 GTTAAGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACAT
520 GTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*** * *
15126934 GCCCGAGCCCAGCATGTGCTGCTGTAACCTTCGGTCCGGTCTGATCTTCA-ACTGGGAATGAACT
584 GCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTT-AGACTGGGAATGAACT
* * * *
15126998 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCAGGCGAAAGGGGCGGGATG
648 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * *
15127063 CGCAAGCCAGGGATCGAACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGT
713 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * * * * *
15127128 CGGGTCTAATGTTAGACT-GGAATGAACTCTGTATGCTTAAGCCGACTGACGAAACGA----GCG
778 CCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* *
15127188 GGCGGGCGGGCACTAGGTCGACCAGTGAAA
843 GGCGGGCGGGCACTAGGTCGGCCAGAGAAA
* * ** * * *
15127218 CGGGATGCGCAAGCCGTGTATCGATGGGGTAATAGGTGGGTTTAGGTACATCTTTATATTTTTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15127283 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCATTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
15127348 TCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTACGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
*
15127413 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
15127478 GCATGCACAAAAAAATTCAGATAAAAACTCAAAGTGTACAAGATTTTGTGAGCAATTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
15127543 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
15127608 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
15127673 CCCATCGCACATCATGTGCGCACACCCCCCTCGCCCCCCCGATTGCCGGAA-CCCAATGCCACCG
456 CCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
15127737 GTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
520 GTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * *
15127802 GCCCGAGCCCATCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
584 GCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* ** * * *
15127867 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCAAGCGCTCAGCCGACCAGAGGGGCGGTATGT
649 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * *
15127932 GCAAGCCGGGGATCGATTGGGTCCCCCTTTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGTC
714 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTC
* * ** * *
15127997 GGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCTGACCAACGTAACGAGCGGGCGG
779 CGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * *
15128062 GCGAGCGAGCACTAGGTCGGCCAGTGAAA
844 GCGGGCGGGCACTAGGTCGGCCAGAGAAA
* * *
15128091 CGGGATGCGCAAGCCGTGTATCGATGGGGTAGTAGGTGGGTTTAGGCACATCTTCATACTTT-TG
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTG
* * *
15128155 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCATTCACGTGAAGT
65 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
15128220 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTT
130 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTT
* *
15128285 TTTAGAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
195 TTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* *
15128350 GGCATGCACAAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCAATTGAAAAAA
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
15128415 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
15128480 AAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * *
15128545 ACCCATCGCACATCATGTGCGCACACCCCCCTCGCCCGCCCCGATTGCCGGAACCCCAATGCCAC
455 ACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC-CCCCGATCGCCGGAACCCCAATGCCGC
*
15128610 CGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCATCAC
518 CGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
15128675 ATGCCCGAGCCCAGCATGTGCTGTCC-CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
582 ATGCCCGAGCCCAGCATGTGCTG-CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
* ** *
15128739 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAAGCGCTCAGCCGGCCAGAGGGGCGGTA
646 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
15128804 TGTGTAAGCCGGGGATCGACCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
711 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * *
15128869 GTCGGGTCCAATGTTAGACTGGGAATGAACTCTGTATGCATAAGCCGACCGATGAAACGA----G
776 GTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGG
*
15128930 CGGGCGGGCGGGCACTAGGTCGGCCAGTGAAA
841 CGGGCGGGCGGGCACTAGGTCGGCCAGAGAAA
* * * * * *
15128962 CGGGATGCGCAAGCCGTGTATTGGTGGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15129027 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACATGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
15129092 TCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTAAAAACTTTTTACGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
*
15129157 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
15129222 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAG
261 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
15129287 TGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
15129352 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCGGCA
391 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
15129417 CCCATCACACATCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGG
456 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
* * * **
15129481 TTAAGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGATGAAGAAAAATTTGGCACCAGCACAT
521 TCAGGTTCTCCG-CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*
15129545 GCCGGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTC
584 GCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-CG----G----T---CT-GG--T---CT-
* * *
15129610 CGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCG
626 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
15129675 TTCAGCCGGCCAGAGGGGCGGGATACACAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGC
688 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGC
** * * *** * * *
15129740 TAATCCTGCTGACGCAACCCTCGGTCCGGTATGATCTTAGACAGGGAATGAATTCCGTATGCCTA
753 CGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTA
* ** * * * * ** *
15129805 AGCCAACGGATAAAATGAGCGGGCGGACGGGCGAGCGGGCACGATG-CTGGTGAGAGAGA
818 AGCCAACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTAGGTC-GGCCAGAGAAA
* *
15129864 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
15129929 ATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * ** *
15129994 TCATGGCAAGACGACTC-ATTTCTTTTTTTCATGATTTTCAAAACCTTTTGCT-GTTCGGGATTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-AAAAACTTTTTATGGTTTGGGATTT
* ** * *
15130057 TTTAAAATTTTTTCGGATTGAGTTTTGGTCCCAAACTTGGTAGACGTGATTGCCTTGTAGTTTTT
195 TTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGA-T-CCTTGTA-TTTTT
* ** *
15130122 TTTGGTATGCA-ATATAAATCTTCAGCCTAAAAACTCAAAGTGTACAACA--TTGTGACCATTTG
257 TTTGGCATGCACA-A-AAAAATTCAG-CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* * *
15130184 AAAAATGTGTCGCCATTTCAGACACTTTAATGGCTACTGGCAG-GAACCTGTAAAATC-CAAATG
319 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
15130247 CACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTGAGGGATAGGGGGCCAATATAA-GGCCATG
384 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAG
** * * * *
15130311 TATTAGCCACCCAT-GCACATCATGTTCACACGA-CCCCCGGCCCCCTCGATCGCCGGCAAACCC
448 TACCAG-CACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGCCGG-AACCCC
* * * * * *
15130374 AATGTCGTCGGTCAGATTCTCCCGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGAC
510 AATGCCGCCGGTCAGGTTCT-CCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
15130439 ACCAGCACATGCCCGAGCCCAGCAAGTGCTACCTCAAGCCTCAGTCTGATTCGATCTTAGACTGG
574 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--TC-G----G----T---CT-G
* *
15130504 GAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAG
622 G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
15130569 CGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG-GCTGGGTCCCCCT
678 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCT
* * * * * * * ** *
15130633 CTACGTGTTGTCGATCCTGCTACCACAGCCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAAGT
742 CTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACT
* * *
15130698 CTGTATGCCTAAGCTAACCGACGAAACGAGCGGACGGGTGGGCGGGCACT-GCGTCGGCCAGAGA
807 CTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTAG-GTCGGCCAGAGA
*
15130762 GA
871 AA
* *
15130764 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTGAGGCACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * ** *
15130829 ATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAACAGTCCCTTAAGCCTTCACGTGATGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* ** **
15130894 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAACTTTTTGCGGTTCAGGATTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTAAAAACTTTTTATGGTTTGGGATTT
* * * *
15130959 TTTTAAATTTTTTTGAAAGGATTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
195 TTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* *
15131024 GGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAT
260 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
15131089 GTGTCCCCATTTCAGACACTTTAATTGCTACTTGCAGAAAACCTATAAAATCTCAAATGCTCTTT
325 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * *
15131154 AAGGGGCTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGACCAGTATAAGGGCCAAGTACCAGC
390 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
15131219 ACCCATCACACATCATG
455 ACCCATCGCACATCATG
15131236 GTGCCTGACG
Statistics
Matches: 5218, Mismatches: 456, Indels: 176
0.89 0.08 0.03
Matches are distributed among these distances:
867 14 0.00
868 818 0.16
869 56 0.01
870 9 0.00
871 483 0.09
872 10 0.00
873 708 0.14
874 20 0.00
875 315 0.06
876 35 0.01
877 773 0.15
878 3 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
887 1 0.00
890 2 0.00
892 1 0.00
893 2 0.00
894 173 0.03
895 1 0.00
897 21 0.00
898 10 0.00
899 618 0.12
900 214 0.04
901 154 0.03
902 286 0.05
903 74 0.01
904 373 0.07
905 12 0.00
906 21 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (872 bp):
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTATGGTTTGGGATTTT
TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCG
GTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
GGGCGGGCACTAGGTCGGCCAGAGAAA
Found at i:15129619 original size:26 final size:26
Alignment explanation
Indices: 15129590--15129642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129580 CCGATCTGAT
15129590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15129616 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15129642 C
1 C
15129643 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15133110 original size:26 final size:26
Alignment explanation
Indices: 15133059--15133111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15133049 TTGGTCTGAT
* *
15133059 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15133085 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15133111 C
1 C
15133112 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15133993 original size:26 final size:26
Alignment explanation
Indices: 15133957--15134009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15133947 CTAGTTCGAT
*
15133957 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
15133983 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
15134009 C
1 C
15134010 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:15134719 original size:905 final size:903
Alignment explanation
Indices: 15131315--15136211 Score: 6730
Period size: 905 Copynumber: 5.5 Consensus size: 903
15131305 CTGATCCGAT
* *
15131315 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
15131380 CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCACCCTCTGCATGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * * * * * * *
15131445 TGCTGATGCAACCTTTGGTCCAGTACGATCTTAAACT-GGAATGAATTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
15131509 -CGATGAAACGAGTGGGCGGACAGGCGGGCG-GGCACTATGCCGGCCAGAGAGACCGGATGCGCA
196 CCGACGAAACAAGCGGGCGGGC-GGCGGGCGAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
15131572 AGCCGTGGATCAATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
15131637 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
15131702 CGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAAATTTT
390 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTT
* * ** *
15131767 TCGAAAGGAGTTTTGGGCGTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15131832 AAAATTGAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15131897 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15131962 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACA
650 GTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * * *
15132027 TCATACTTGCACAC-CCCCTGA-CCCCCCCGATCGTCAGAACCCCAATGCCGTCGATCAGGTTGT
715 TCAT--GTGCACACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCT
* ** *
15132090 CCGGTGATGCTCCGGA-GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
778 CCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
15132154 CAGGATATGCTGCCGCAA-CC-C--T-T-G---G----T---CT-GG---G--CT--G-AT-
842 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
15132190 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCATGACACGAGTGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
15132255 CGGCTAGAGAGGCGGGACGCGCAAGCCGGGGATCGGTCGCGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
15132320 TACTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15132385 CCGACGAAACAA------GTG-GGCGGGCG-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACAAGCGGGCGGGCGGCGGGCGAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
15132442 GCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
15132507 TTTTTATGGCTTGCAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
* ** * * *
15132572 GACTCATTTTCTATTTTTCACGATTTTCAAAATTTTTTGCGGTTCGGGATTTTTGAAAATTTTTT
391 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTT
* **
15132637 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTGCAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15132702 AAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
15132767 AGACACTTTAATGGCTACTGGCAGCCAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
15132832 TTGTCGAGGTTTGATGAGGGATA-GGGGCCAATAGAAGGGCCTAGTACCAGCACCCATTGCACAT
651 TTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
15132896 CATGTGTGCACAGACCCCCGA-CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTT
716 CA--TGTGCACACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTC
* * *
15132960 CGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCCGCACATGCCCGAGCCCA
779 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
15133025 GCATGTGCTACCGTAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
844 GCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
15133085 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * **
15133150 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
15133215 TGCAGCCGCAACCCTCAGTAT--GGACCAATCTTTGACTGGGAATTAACTCCATATGCCTAAGCC
131 TGCTGCCGCAACCCTC-G-ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *** *
15133278 AACCGATGAAGTGAGCGGGC--G-GGCGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGT
194 AACCGACGAAACAAGCGGGCGGGCGGCGGGCGAGGCACTACGTCGGCCAGAGAGACGGGATGCG-
** ***
15133339 C-AGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
15133403 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
15133468 GACGAATTGTTATCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
388 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTT
*
15133533 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
15133598 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
15133663 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
15133728 GAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCA
648 GAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15133793 CATCATGTGCACACA-CCCCCAGCCCCCCCGATCGTCGAAACCCCAATGTCGCCGATCAGGTTCT
713 CATCATGTGCACACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCT
* ** * * *
15133857 CCGGCAATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGTACCTGCCCAAGCC
778 CCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
15133921 TAGCATGTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACTGGGAATGAACTCCATATG
842 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15133983 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
15134048 CGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
15134113 TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGGCTAAGCCAA
131 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15134178 CGGACGAAATAAGCGGGCGGGCGGACGGGCGGGTAGGCAGTACGTCGGCCAGAGAGACGGGATGC
196 CCGACGAAACAAGCGGGCGGGCGG-CGGGC--G-AGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
15134243 GCAAGCCGTAGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
15134308 GCCA-TTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * ** *
15134372 AGACGACTCGTTTTCCATTTTTCTCGATTTTTGAAACTTTTTATGATTCAGGATTTTTTAAAATT
387 AGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATT
* * * *
15134437 TTTGCGGAAGGAGTTTTAGCCCCAAACTTGGTAGCCGCGATCCTTGTATTTTTGTTGGCATGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
15134502 AAAATAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
15134567 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
15134631 TGAGTTTTCAAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCGAGTACCAGCACCCATCTC
647 TGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
15134696 ACATCATGTGCACACACCCCCCAGCACCCCCGATCATCGGAACCCTAATGTCGCCAATCAGGTTC
712 ACATCATGTGCACACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTC
* * *
15134761 TCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGTACATGCCCGAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
15134826 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATTGAACTCCGTATG
842 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
15134888 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * **
15134953 CGGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGTTCCCCCTCTACGTGCTACTAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
15135018 TGCTGCTGCAACCCTCTG-TCCTGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCA
131 TGCTGCCGCAACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
15135082 ACCGACGAAACAAGCGGGCGGGCGGTCGGGC-AGGCACTATGTCAGCCAGAGAGACGGGATGCGC
195 ACCGACGAAACAAGCGGGCGGGCGG-CGGGCGAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
15135146 AAGCCGTAGATCGATAGGGTGGTAGGTGGGATTAGGCACATCATCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
15135211 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
15135276 ATGACTCATTTTCTATTTTTCACGATTTTTGAAACCTTTTGC-AGTTCGGGATTTTTTAAAATTT
389 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGA-TTCGGGATTTTTTAAAATTT
* *
15135340 TTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
15135405 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
15135470 TTCAAACACTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
15135535 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
648 GAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15135600 CATCATGTGCGCACAACCCCCCGGCCCCCCTGATCATCGGAACCCCAAT---GCCG-TC-GG---
713 CATCATGTGCACAC-ACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTC
* * * * * *
15135657 T-CAG-G-TTCTCCGACGATGGTGCCCCGGCGAAGAAAAAAGTGGCACCAGCACATGCCTGAGCC
777 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
15135719 CAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTCTGTATG
842 CAGCATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15135781 CTTAGACTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
15135846 CGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTG-TCGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT-GCCGATC
* * * * * *
15135910 CTGCTGCTGCAACCTTTGATCCGGTCCGATCTTAGACTGGAAATGAACCCCGTATGCCTAAGCTA
130 CTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
15135975 ACCGACGAAACAAGCGGACGGGCAAGCGGGCGGGCG-GGCACTACG-CTGGCCAGAGTGACAGGA
195 ACCGACGAAACAAGCGGGC-GG---GC-GGCGGGCGAGGCACTACGTC-GGCCAGAGAGACGGGA
* * **
15136038 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCC
254 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
15136103 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
319 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
15136168 GGAAAATGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTT
384 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
15136212 CTATTTTTGT
Statistics
Matches: 3587, Mismatches: 364, Indels: 120
0.88 0.09 0.03
Matches are distributed among these distances:
868 47 0.01
869 538 0.15
870 3 0.00
871 2 0.00
873 1 0.00
874 1 0.00
875 138 0.04
876 24 0.01
877 9 0.00
878 1 0.00
882 1 0.00
885 2 0.00
886 2 0.00
889 1 0.00
891 2 0.00
892 2 0.00
893 296 0.08
894 5 0.00
895 174 0.05
896 5 0.00
897 198 0.06
898 338 0.09
899 424 0.12
900 44 0.01
901 100 0.03
902 293 0.08
903 81 0.02
904 113 0.03
905 652 0.18
906 90 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGGGCGGCGGGCGAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCACACACCCCCCAGCCCCCCCGATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15134891 original size:26 final size:26
Alignment explanation
Indices: 15134862--15134914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15134852 CTGGTCCGAT
* *
15134862 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15134888 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15134914 C
1 C
15134915 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15135791 original size:26 final size:26
Alignment explanation
Indices: 15135755--15135807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15135745 CCGGTCCGAT
*
15135755 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAACAAACTCTGTATG
*
15135781 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACAAACTCTGTATG
15135807 C
1 C
15135808 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCTGTATG
Found at i:15137020 original size:828 final size:822
Alignment explanation
Indices: 15135385--15137039 Score: 2127
Period size: 828 Copynumber: 2.0 Consensus size: 822
15135375 GTGATCCTTG
* *
15135385 TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACCA
* * *
15135450 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* *
15135515 AATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCC
*
15135580 AAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCTGATCATCGGAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCTGATCATCGAAACCC
* * * * *
15135645 CAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAAAGTGGCACCAGCACAT
261 CAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAAAGCGACACCAGCACAT
* * * *
15135710 GCCTGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTC
326 GCCCGAGCCCAGCATGTGCTGCCGAAACCCTC-GTCCGATCC-A-CTTAGACCGAGAATAAACTC
** *
15135775 TGTATGCTTAGACTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCA
388 CCTATGCTTAGACTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGAGGGCA
* *
15135840 CTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTCGC
453 CTCAGCCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTCAC
* * * *
15135905 CGATCCTGCTGCTGCAACCTTTGATCCGGTCCGATCTTAGACTGGAAATGAACCCCGTATGCCTA
518 CAATCCTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGAAATGAACCCCATATGCCTA
* *
15135970 AGCTAACCGACGAAACAAGCGGACGGGCAAGCGGGCGGGCGGGCACTACGCTGGCCAGAGTGACA
583 AGCTAACCGACGAAACAAGCGGA--GGC-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACA
* * ***
15136035 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGT
645 GGATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCAA
15136100 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
710 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
15136165 ATGGGAAAATGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTC
775 ATGGGAAAACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTC
* *
15136213 TATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACCA
1 TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACCA
* *
15136278 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTA
66 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
* *
15136343 ATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCAAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCC
*
15136407 AAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCTCCCGGCACCCCC-GATCGTCGAAAC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACAACCC-CCCGGC-CCCCCTGATCATCGAAAC
* *
15136470 CCTAATGCCGCCGATCAGGTT-TCCCAGACGATAGCTCTGGTGATTGTGCTCCGACGAAGAAAAA
259 CCCAATGCCGCCGATCAGGTTCT-CC-GACG--A-------TG---GTGCCCCGACGAAGAAAAA
* * * *
15136534 TGCCGACACCCGTACACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C-T-CGAT-C-CTTG
310 AG-CGACACCAG--CACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGTCCGATCCACTTA
* * *
15136593 GACCGAGAATGAACTCCCTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGA
372 GACCGAGAATAAACTCCCTATGCTTAGACTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGA
* * ** ** * * * *
15136658 AATGAGCGTGAGGGTGCTCAGTTGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCG-GCTGGGT
437 AACGAGCATGAGGGCACTCAGCCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGATC-GGGT
* * * *
15136722 CCCCCTCTGCGTG-CTACCAATCCTGCT-ATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGG
501 CCCCCTCTACGTGTC-ACCAATCCTGCTGCT-GCAACCCTCGATCCGGTCCGATCTTAGACT-GG
* * * *
15136785 -AATGAACTCCATATGCCCTAAGC-CA-CTACGAAACGAGCGGA-GC-G-GGGC-GGCGGGCACT
563 AAATGAACCCCATATG-CCTAAGCTAACCGACGAAACAAGCGGAGGCAGCGGGCGGGCGGGCACT
* * *
15136843 ATGCCGGCCAGAGAGAGCGGGATGCCGCAAGTCCATGGATCGATAGGGTTATAGGTGGGTTTAGG
627 ACGCCGGCCAGAGAGA-CAGGATG-CGCAAG-CCATGGATCGATAGGGTGATAGGTGGGTTTAGG
* *
15136908 CACATCTTCATATTTCT-CAAGCCAATGCCA-TTTTATGGCTTG-CAATTGATACAATGG-CCCT
689 CACATCTTCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
15136969 TAAGCCCTTCATGTGAAGTTTCAGTGGGCAAGAACGACTCGTTTT-TATTTTTCACGATTTTTGA
754 TAAG-CCTTCACGTGAAGTTTCA-TGGG-AA-AACGACTCGTTTTCTATTTTTCACGATTTTGGA
15137033 AACTTTT
815 AACTTTT
15137040 TACGGGTCGG
Statistics
Matches: 721, Mismatches: 75, Indels: 62
0.84 0.09 0.07
Matches are distributed among these distances:
825 8 0.01
826 58 0.08
827 113 0.16
828 217 0.30
829 59 0.08
830 3 0.00
833 17 0.02
834 173 0.24
835 9 0.01
837 3 0.00
838 3 0.00
839 1 0.00
840 18 0.02
841 7 0.01
842 2 0.00
843 30 0.04
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (822 bp):
TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACCA
TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCTGATCATCGAAACCC
CAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAAAGCGACACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGTCCGATCCACTTAGACCGAGAATAAACTCCCT
ATGCTTAGACTGGGAACGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGAGGGCACTC
AGCCGGCCAAAGGGGCGGGATGCACAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGTCACCAA
TCCTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGAAATGAACCCCATATGCCTAAGC
TAACCGACGAAACAAGCGGAGGCAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGC
GCAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGA
AAACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTC
Found at i:15137955 original size:898 final size:885
Alignment explanation
Indices: 15136213--15153107 Score: 18462
Period size: 900 Copynumber: 18.9 Consensus size: 885
15136203 GAAACTTTTC
* * *
15136213 TATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTAAAAGATTTTATGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15136278 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
15136343 ATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCAAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
15136407 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCACCCCCGATCGTCGAAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGC-CCCCCGATCGTCGGAACCC
* * * ** * *
15136472 TAATGCCGCCGATCAGGTT-TCCCAGACGATAGCTCTGGTGATTGTGCTCCGACGAAGAAAAATG
259 CAATGCCGCCGGTCAGGTTCT-CC-GACGAT-GCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * *
15136536 CCGACACCCGTACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCTTGGACCGAGA
321 -CGGCACCAG--CACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-CG-T-C-GGGTCC--G-
* ** *
15136601 ATGAACTCCCTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCG
375 --GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
15136666 TGAGGGTGCTCAGTTGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCTGGGTCCCCCTCTG
437 TGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTG
** * ** * *
15136731 CGTGCTACCAATCCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCA
502 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
15136796 TATGCCCTAAGCC-A-CTACGAAACGAGC---GGA---GCGGG-GCGGCGGGCACTATGCCGGCC
567 TATG-CCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTG-GGCGGGCACTACGCCGGCC
* **
15136852 AGAGAGAGCGGGATGCCGCAAGTCCATGGATCGATAGGGTTATAGGTGGGTTTAGGCACATCTTC
630 AGAGAGA-CGGGATG-CGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
15136917 ATATTTCT-CAAGCCAATGCCA-TTTTATGGCTTG-CAATTGATACAATGG-CCCTTAAGCCCTT
692 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTT
* *
15136978 CATGTGAAGTTTCAGTGGGCAAGAACGACTCGTTTT-TATTTTTCACGATTTTTGAAACTTTTTA
756 CACGTGAAGTTTCA-T-GGCAAG-ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* *
15137042 CGGGTCGGGATTTTTTAAAATTTTTGCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAATC
818 CGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG-ATC
15137107 CTTG
882 CTTG
* *
15137111 TATTTTT-TTCGGCATGCACAAAACAATTCAGCTAAACACTCGAAGTGTACAAGATTTTGTGACC
1 TATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
15137175 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTATTGGCTACTAGCAGCAAATCTGTAAAATCTC
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
15137240 AAATGCTTTTTCA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
130 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
15137304 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATTGTCGGAACCTC
195 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
* * * * * * *
15137369 AATGTCGCCGGTCAGGTTCTCCGATGATGCTTCGCCAATGGTGCCTCGACGAAGAAAAATGCAGC
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * *
15137434 ACCAGCACATGCTCGAGCCTAGCATGTGCTGGCGCAACCC-TC-GGTCC-G-ATCCG-AT-CTTA
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGGTCCGGAATCCGTATGCTTA
* **
15137493 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTTCTCAGTCGGC
390 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
* * * * *
15137558 CAGAGGGGCAGGATGCGCAAGCCGGGTATTGTCCGGGTCCCCCTCTACGTGCTGTCGATCCTACT
455 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * ** *
15137623 GCCCCAACCCTCGGTCGGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGA
520 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
15137688 CGAAATGAGCGGGAGGGTAGGCACACGGGCGGGTGGGCGGGCGCTATGCCGGCCAGAGAGACGGG
585 CGAAATGAGC----GGG--GG---ACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
15137753 ATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGG
641 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
15137818 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCAT
706 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
15137883 GGCAAGACGACTCGTTTTCTACTTTTT-AAGATTTTTGAAACTTTTTACGATTCGGGATTTTTTA
771 GGCAAGACGACTCGTTTTCTA-TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* *
15137947 AAATTTTTTCGAAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTG
835 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* **
15137998 TATTTTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
15138063 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15138128 AATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGAATA-GGGGCCAATATAAGTGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * * * * *
15138192 AAGTAACAACACCCATCGCACATCCTATGTGCACATCCCCCTGGCCCCGTCGATCGCCAGAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACCC
* * * * *
15138257 CAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATGTGG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
15138322 CACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCATCGGTCCAGTCCGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC--C-GT-C-G---GGTC-----C--
* *
15138387 GGAATGAACTCTGCATGCTTAGAC-AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
374 GGAAT---C-C-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
15138451 GCGTGCGGGTGCTCAATCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
434 GCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCT
* * * * *
15138516 TTGCGTGCTGCCGATCCTGCTGCCGCAATCCTCGATCCGTTCTGATCTTAGACTGGG-ATGAACT
499 CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * * *
15138580 CCGTATGCCTAAGCCAACCAACG-AA--A-C----GA---GCGGGCGGGCGGGCACTGCACCAGC
564 CCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGGC
* ** * *
15138634 CAGAAAGACGGGATATGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCAT
629 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** * *
15138699 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCAT
694 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
15138764 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTT
759 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTT
*
15138828 CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
823 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * ** *
15138891 TATTTTTTTTGGCATGCACAAAAAAATTCGGCTAAAAACTCGATTTGTACAAGATTTTCTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
** * *
15138956 TTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGTAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* **
15139021 AATGCTCTTTAAGGGGGTGGGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
15139086 AAGTAGCAGCACCCATCGCACATCATGTGCGCACACTCCCCCGGCCCCCCCGATCGTCGAAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCCGATCGTCGGAACCC
* ** * * * *
15139151 CAGTGCCGTTGGTCAGGATCTTCGGCGATGCTCCGACGA----------A-GAA-AAATAT--GG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
15139202 CATCAGCACATGCCCCAGCCCAGCATGTGCTGCTGCAACCC-TCGGTCCGATCCAATCTTAGACT
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGG---G------TC-----C-
** *
15139266 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATG
374 -GGAAT---C--CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * *
15139331 AGCGTAG-GGGCGCTCAG-CAGGCCAGAGGGGTGGGATGCAAAAGCCGGGGATCGACTGGGTCCC
433 AGCGT-GCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCC
* * * * * *
15139394 CCTCTGCGTGCTGTCGATCCTGTTGCTGCAACCTTCGGTCTGATCTGATCTTAGACTGGGAACGA
496 CCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * * * *
15139459 ACTCTGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGACGGGCGGGCGGGCACTACGC
561 ACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG-GGACGGGCGGGTGGGCGGGCACTACGC
* *
15139524 TGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
625 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
15139589 TCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
690 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
15139654 TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACG
755 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
15139719 ATTCGGGATTTTTTAAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTCGGTAGACGTGATCCTT
820 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
15139784 G
885 G
* * * *
15139785 TATTTTTTTTGGCATGCACAAAAAAATTCAGC-AAAACATTCGAAGTGTACAAGATTTCGTCACC
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACC
* * *
15139849 ATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAACAAACCTGTAAACTCTC
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
15139914 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATATGGGACCAATATAAGGGC
130 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ***
15139979 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCGCCCCGATTACCGGAACC
195 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCCGATCGTCGGAACC
* * ** * *
15140044 CTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCA
258 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * **
15140109 ACACCAGCACATGCTCTAGCCCAGCATGTGCTGGTGCAA-CC-TC-GGTCCGG--TCCG-AT-CT
323 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGGTCCGGAATCCGTATGCT
* **
15140167 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAGTGAGCGTGCGGGCGCTCAGTCG
388 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * *
15140232 GCCTGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGTCGATGCTG
453 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * * *
15140297 CAGCCGCAACCCTCTGTCCGGTCCGATCTTAGACTAGGAATGAAGTCCGTATGCCTAAGCCAACC
518 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
15140362 GACGAAATGAGC--GGG-CGGGC----GGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCA
583 GACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
15140420 AGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGTGTGCCAATGCC
648 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
** *
15140485 ATTTTTATGGCACGTAAATTCATACAATGGTCCTTTAAGCCCTTCACGTGAAGTTTCATGGCAAG
713 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAG
* * * * *
15140550 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGACTTTTTAAAATTTC
777 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *** * * *
15140615 TTCGAAAGGAGTTTTGGAAACAAACCTGGTAGATGTGATTCTTG
842 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
15140659 TATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15140723 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACTTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
15140788 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * ** ** * *
15140853 AAGTACCAGCACCCATCGTACATCATGCGCGCGCACCCCCTAGCCCTCGTGATCATTGGAA-CCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCC
* ** *
15140917 AATGCCGCCGGTCGGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCAAACGAAGAAAAATGTGG
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGG
* * *** * * *
15140981 CAGCAACACATGCTTAAGCCCAGCATGTGCTACTGTAACCCTCGGTCTGGTCCGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GTC-GG---G-TC-----C--
* * *
15141046 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCAAGAAACGA
374 -G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * ** *
15141111 GCATGCGGGCACTCAGCCGGCCTGAGGGGCGGGATGCGCAAGTCGGGGATCAG-CTTGGTCTCCC
434 GCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCCGGGTCCCCC
* * * ** * * * *
15141175 TCTGTGTGCT-ACTGATCCTGCTACCATAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGGA
498 TCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * * * * *
15141239 CTCCGTATGCCTAAGCCAA-AGAATGAAACGAGC---GGACGGGCGGGCGGCCGGCCACTACGTC
562 CTCCGTATGCCTAAGCCAACCG-ACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCC
* * * *
15141300 GGCCAGATAGACGGGATACGCAAGCCGTGCATAGATA-GGTGGTAGGTGGGTTTAGGCACATCTT
626 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
15141364 CATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTT
691 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
15141429 CATGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCGG
756 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* ** * * * *
15141494 TTCGTGATTTTTTAAAATTTTTTCAAAAGGATTTTTGGTCCCAAACCTGGTAGACGTGATCCTTT
821 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
15141559 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15141624 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCC
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
15141689 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
15141754 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCGATTGTCGGAACCT
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCGATCGTCGGAACCC
* * ** ** *
15141819 CAATGTCGGCGGTCAGGTTCTCCGGTGATGCTTTGCCGATGGTGCCCCGGA-GAAGAAAAATGCG
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCG
* * *
15141883 GCACCAGCACATGCTCGAGCCTAGCATGTGCTGGCGCAACCC-TC-GGTCCGG--TCCG-AT-CT
323 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGGTCCGGAATCCGTATGCT
* * * *
15141942 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTCAGTCG
388 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * *
15142007 GCCAGAGGGGCAGGATGCGCAAGCCGGGTATCGTCCGGGTCCCCCTCTACGTGCTGTCGATCCTA
453 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* ** **
15142072 CTGCCCCAACCCTCGGTTGGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
518 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *** * *
15142137 GACGAAACGAGCGGCAGGGTA--GGCGCACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGT
583 GACGAAATGAGCGG--GGG-ACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
15142200 GCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGGCAAT
645 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
15142265 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCA
710 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* ** * *
15142330 AGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTCTGA-GGTTCGAGATTTTTTAAAAT
775 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT-TTACGGTTCGGGATTTTTTAAAAT
* *
15142394 TTTTTCGGAAGGATTTTTGGCCCAAAACTTGGTAGACGTGATCCTTG
839 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
15142441 TATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAGA-TCAAAGTGTACAAGATTTTGTCACA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACC
* *
15142505 ATTTGAAAAAAGTGTCCCCATTTTAGACACTTT-GTGGCTACTGGCAGCAAACCTGTAAAATCTC
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
15142569 AAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGATTGATGAGGGATAGGGGGCGAATATAAGGGT
130 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
15142633 GAAGCACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCGACCGTCGGAACCC
195 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCC
* ** * * * * *
15142698 TAATGCCTTCGGACAGGTTCTCC-AGCGATGCTCCGGCAATGGTGCCCCGACAAAAAAAAATGCG
259 CAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* *
15142762 GCACGACCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTCCAGTCCGGTCTTAGACT
323 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC--C-GT-C-G---GGTC-----C-
* * *
15142827 GGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACAAAATG
374 --G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * ** *
15142892 AGCGTACGAGCGCTCAGCCAACCAGAGGGGCGGGATGCGTAAGCCGGGGATCGAT-CGGGTCCCC
433 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTCCCC
* * * * * * **
15142956 CTCTGTGTGCTATCAATCCTGCTACCGCAACCCTCGATCCTGTCCAATCTTAGACTGGG-ATGAA
497 CTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * **
15143020 CT-CGTATGCCTAAGCCAACTGACGAAATGAGCGGGTGGGCACGCGGGT----GGGCACTACGCC
562 CTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG-GGACGGGCGGGTGGGCGGGCACTACGCC
* * *
15143080 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGGTAGGGTGGTAGGTTGGTTTAGGCACATCTT
626 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
15143145 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTT
691 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
15143210 CACGTGAA-TTATAATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
756 CACGTGAAGTT-TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
15143274 GTTCGGGATATTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTT
820 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
15143339 G
885 G
* *
15143340 TATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTATGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
15143405 TTTGAAAAAAGTGT-CCCATCTCAGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
15143469 AATGCTCTTTAGGGGGGTGTGAGTTCTCTACGTTTGATGAGAGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
15143534 AAGTACCAGCACCCATTGTACATCATATGTGCACACCCCCCTGGCCCCCAGATCGCCGGAACCCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCC
* * *
15143599 AATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGCAGC
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
*
15143663 A-CAGCACATGCCCGAGCCCATCATGTGCTGCCGCAACCC-TCGGTCCAATTCGATCTTAGACTG
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGG--------G-TC-----C--
15143726 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
374 -G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
15143791 GCGTGCGGGCGCTCAG-CAGGCCAGAGGGGCGGGATGCGCACGCAGGGGATCGTCTGGGTCCCCC
434 GCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCC
** **
15143855 TCTGCGTGCTGTCGATCCTATTGCC-CTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAA
498 TCTGCGTGCTGTCGATCCTGCTGCCGC-AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * ** *
15143919 CTCCGTATGCCTAA-CCAATCGATGAAACAAGTGGGAGGGTGGCAGGGTGGGTGGGTGGGCGGGC
562 CTCCGTATGCCTAAGCCAACCGACG--A-AA-T--GAGCG-GG--GGACGGGCGGGTGGGCGGGC
15143983 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
618 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
15144048 CACATCCTCATATTTCTACATGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCT
683 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
15144113 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACT
748 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * *
15144178 TTTTATGATTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
813 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
15144243 GATCCCTG
878 GATCCTTG
*
15144251 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
15144316 TTTGACAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCATCAAACCTGTAAAATCTTA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
15144381 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
15144446 AAGTACCAGCACCCAT----C--C-----CG---A-----C--CCCCCCGATCGCCGGAACCCCA
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* * * * * * * * *
15144490 AAGCCGCCGATCAGGTTC-CCCAGGGATGCTCCGACGATGGTGCCCGGGCGAAGAAAATTGTGCC
261 ATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
** *
15144554 ACCAGCACATGCCCGAG-CCACGCATGTGCTATCGCAACCCTCAGTCCAGTCCGATCTTAGACTG
325 ACCAGCACATGCCCGAGCCCA-GCATGTGCTGCCGCAA-CC-C-GT-C-G---GGTC-----C--
*** *
15144618 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTATATGCCTAAGTTAACCCACGAAACGA
374 -G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
15144683 GCGTGCGGGCGCTCAGTCGGCCAAAGGGGTGGGATGCGCAAGCCAGGGATCGAT-CGGGTACCCC
434 GCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTCCCCC
* * * * *** *
15144747 TCTGCGTGCTGTCAATCCAGCTGCCGTAACCCTCAGTCTACTCTGATCTTAGACTGGAAATGAAC
498 TCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
*
15144812 TCCGTATGCCTAAGACAACCGACG-AA--A-----GGA---GCGGGT----GGGCACTACGCCGG
563 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGG
* * *
15144862 CCAGAGAGACGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
628 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*** *
15144927 TATTTCTATGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
693 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* **
15144992 CGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTT
758 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * * *
15145057 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAATCTAGGTGGACGTGATCCTTG
823 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
15145120 TATTTTTGTTGGGATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15145185 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAACAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
15145250 AATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGG-C
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** * * * **
15145314 AAGTATGAGCAGCCTTCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCACCGGAACCCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCC
* * ** *
15145379 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGCGAC
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * * ** * * ***
15145444 ACCAACACATGCCAC-AACCC-TCA-GTCCGGTCCG-ATCTTAGACTTGG-AATGAACTCCGTAT
325 ACCAGCACATGCC-CGAGCCCAGCATGTGCTG-CCGCAAC-CCGTC-GGGTCCGGAA-TCCGTAT
15145504 GCTTA-ACCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
385 GCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
15145568 GTCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCAG-CTGGGTCCCCCTCTGCGTGCTGCCGA
449 GTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCCGGGTCCCCCTCTGCGTGCTGTCGA
* * *
15145632 TCTTGCTGCCGCAACCCTCGG-CCTAGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAG
513 TCCTGCTGCCGCAACCCTCGGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
15145696 CCAACTGACGAAACGAGC--GGG-CGGGCGGGCGGGTGGGCACTAGGCCGGCCAGAGAGGCGGGA
577 CCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGG-
*
15145758 AT-CGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
641 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * * *
15145822 CGATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAATCCTTCACGCGAAGTTTCAT
706 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *** ** * * *
15145887 GGCGAGACGACTCATTTTCTGTTTTTTGCGATTTTCAAAACTTTTTGCGGTTCGAGATTTTCTAA
771 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * *
15145952 AATTTTTTCGGAAGGAATTTTGGCCCCAAACTTCGTAGACATGATCCTTG
836 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
15146002 TATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGCGACC
1 TATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
15146067 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
65 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
15146132 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
130 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
15146197 CAAGTACTAG-ACCCCATCGCACATCATTTGCGCACACCCCCTCCCGGGCCCCCTGATCATGGGA
195 CAAGTACCAGCA-CCCATCGCACATCATGTGCGCACA--CCC-CCC-GGCCCCCCGATCGTCGGA
* * *
15146261 ACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-AGTGATGGTGCCCCGACGAAGAAAAA
255 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAA
* * *
15146325 TGTGGCACCAGCACATGCCCAAGCCCAGCATGTGTTGCCGCAACCC-TCGACCCGGTCCGATCTT
319 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCG----GGT-C---C--
* * *
15146389 AGATTGGGAATGAACTCCTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGA
374 ------GGAAT---C-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * ** * * * *
15146454 AACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCATGATTCGCAAGCCGAGGATCGGCTGGGTC
429 AACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTC
** * * * * * * *
15146519 ATCCTCTACGTGCTATCGATCCTACTACTGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAAT
494 CCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * * * *
15146584 GAACTCCGTATGCGTAAGCCAACCGACG-AA--A-C----GA---GTGGGCGGGCGGGAACTGCG
559 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACG
* *
15146638 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATA
624 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
15146703 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
689 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
15146768 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATTATTTTTGAAACTTTTTGC
754 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * *
15146833 GGTTCAGGATTTTTTAAAATTTTTTCGGAA-GATGTTTTGGTCCCAAACTTGGTAGACATGATCC
819 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
15146897 ATG
883 TTG
* * ** *
15146900 AATTTTTTTTGGGTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
15146965 TTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
15147030 AATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTAGATGCGGGATAGGGGACCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
15147095 AAGTACCAGCACCCAACGCACATCATGTGCGCACACCCCCCTCGGCCCCCCTGATCGTCAGAACC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCC-GATCGTCGGAACC
* *
15147160 CCAATGCCGCCGGTCAGGTTCTCCGATGATTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
258 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* *
15147225 ACACCAGCACATGGCCGAG-CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
323 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GT-CGG---G-TC-----C-
* *
15147289 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA-CCACGAAACA
374 -GGAAT---C--CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * ** **
15147353 AGCATGCGGGCGCTAAGTCGGCCGGAGGGGCGGGATGCGCAAGCCGAAGATCGGT-CGGGTCTTC
433 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCCGGGTCCCC
** * *** * *
15147417 CTCTGCGTGCTACCGATCCTGCTACCATTACCCTTGGTCTGGTCT-ATTCTTAGACTGGGAATGA
497 CTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA-TCTTAGACTGGGAATGA
* * * ** * *
15147481 ACTCCGTATGGCTAAGCCAACTGACGAAATG-GAC--AGG-CGGGCAAGCGGGTGGGCACTACGC
561 ACTCCGTATGCCTAAGCCAACCGACGAAATGAG-CGGGGGACGGGCGGGTGGGCGGGCACTACGC
* * *
15147542 CGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACGTCT
625 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * *
15147607 TCATATTTATACGTTG-CAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCGCTTAAGCC
690 TCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
15147671 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTCC
754 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * *
15147736 GGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCT
819 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
15147801 TG
884 TG
*
15147803 TATTTTTGTTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
**
15147868 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCACAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15147933 AATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGAGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * *
15147998 AAGTACCAGCACCAATCGCAAATGATGTGCGCACACCCCCCCGGCCCCCCCGTTC-ACTAGAACC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC-GGAACC
* * * * ** *
15148062 CCAATGCCGCCGGTCAAGTTCTCTGGCGATGCTTCGGTGATGGTGCCTCGACGAAGAAAAATGCG
258 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* *
15148127 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGACT
323 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GTC-GG---G-TC-----C-
* ** * * * *
15148192 GGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTTTGTTTGCCTAAGTCAACACATGAAACA
374 -GGAAT---C--CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * ** * * * * *
15148257 AGTGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATTGGCCAGGTCCTCC
433 AGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCC
* * * *
15148322 TCTACGAGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
498 TCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* ** * *
15148387 TCTGTATGCCTAAGCCAAATGACGAAATGA---GGGGACGGGC----GGACGGGCACTACGCCGT
563 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGG
* * * *
15148445 CCAGATAGACGGGATGCGCAAGCCGTGGCTCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTTA
628 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*** **
15148510 TATTTCTATGTGCCAATGCCATTTTTATGGAGTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
693 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** * *
15148575 CGTGAAGTTTCATGGCAAGGTGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTT
758 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* *
15148640 CGGGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTG
823 CGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
15148703 TATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
15148768 GTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAATCCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
15148833 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
15148897 AAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCTATCGTCGGAACCCCA
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
* *
15148962 ATGCCGCCGGTCAGGTTCT----C--TG----G-CGATGGTGCCCCTG-CGAAAAAAAATACGGC
261 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGC
* *
15149015 ACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GTC-GG---G-TC-----C--G
* * * *
15149080 GAATGAACTCTGTATGCTTAGACTGGGAATGGACTCCGTATGCTTAAGTCAACCCATGAAATGAG
375 GAAT---C-C-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *** *
15149145 CGTGTGGGCGCTCTA-CCAGCCAGAAGGGCGGGATGCGCATGCTAAGGATCGAT-CGGGTTCCCC
435 CGTGCGGGCGCTC-AGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTCCCCC
* * * * * * * * *
15149208 TTTGCATGCTGTCGATCTTGCTACTGCAACCCTCAGTGCGCTCTGATCTTAGCCT-GGAATGAAC
498 TCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* ** * * * *
15149272 TCCGTATACCTAAAACAACCGACGAAACGAGC--GGG-CGGGCGGGCGGACGGGCACTACGCCAG
563 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGG
* * * *
15149334 CTAGAGAGATC-GGATGCGCAAACCGTGTATCGATAGGGTGGTTGGTGGGTTTA-GCACATCTTC
628 CCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
15149397 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTC
692 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
15149462 ACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
757 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
** * *
15149527 TCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
822 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
15149591 TATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
15149656 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
15149721 AATGCTCTTTAAGGGGGTGTGAGTTCTGGCGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
15149786 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCAGAACCCT
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCC
** * *
15149851 AATGCCATCGGTCAGGTTCTCCGACGATGCT---ACGA---T--------GAAGAAAAAGGCGAC
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* *
15149902 ACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGG
325 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GT-CGG---G-TC-----C---
* *
15149967 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAA
374 G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
15150032 CGTGCGGGCGCTCAGTCGGCCAGAGGGGAGGGATGCGCAAGTCGGAGATCGAT-CGGGTCCCCCT
435 CGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTCCCCCT
* * ** * * ** *
15150096 CTACGTGCTGTTGATCCTATTGCCGCAAACCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACT
499 CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
15150161 CCGTATGCCTAAGCCAACTGACGAAACGAGC--GGG-CGTGC----GGGCGGGCACTACGTCGGC
564 CCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGGC
* *
15150219 CAGAGAGACGGGATGCGCACGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
629 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*** * * ** *
15150284 ATTTCTATGTGCTAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCTTTTAAGACTTCAC
694 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
15150349 GTGAAGTTTCATTGCAAGACGGCTCGTTTT-TATTTTTCATGATTTTTGAAACTTTTTACGGTTC
759 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * *
15150413 AGGATTTTTTAAAATTTTTTCGAAAAGGAGTTGTGGCCCCAAACTTGGTAGATGTGATCCTTG
824 GGGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
15150476 AATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
15150541 TTTGAAAAAAGTGTCCCTATTTCAGACACCTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15150606 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAAGGGGCCACTATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
15150671 AAGTGCCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATTG-CAAGAACC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC-GGAACC
* **
15150735 CCAATAG-CGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGC
258 CCAAT-GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * *
15150799 AGCCCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTTTGATCTTAGAC
322 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GT-CGG---G-TC-----C
*
15150864 TGGCAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAAC
374 -GG-AAT---C-C-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
15150929 GAGCGTGCAGGCGCTCAG-CGGGCCAGAGGGGCGAGATGTGAAAGCCGAGGATCGAT-CGGGTCC
432 GAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCCGGGTCC
* * * * *
15150992 CACTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATT
495 CCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * *
15151057 AACTCCGTATGCCTAACCCAACCGACGAAAT--------GA---GC----GGGCAGGCACTACGT
560 AACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGC
* *
15151107 CGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCT
625 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*** * *
15151172 TCATATTTCTATGTGCCAATTCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCT
690 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
** ** *
15151237 TCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCACAATTTTCAAAACTTTTTGCG
755 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
15151301 GTTCAGGATTTCTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAAACTTGGTGGACGTGATCCT
820 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCT
15151366 TG
884 TG
* * *
15151368 TATTTTTTTTGGCATGGACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * * *
15151433 TTTGAAAAAAATGTTCCCATTTTAGACACTTTAATGGCTTCTAGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15151498 AATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCACTATAAGGGCC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*** * * * *
15151563 AAGTACCAGCATTGATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGATTGTCAGAACCC
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCC
** * * * * *
15151628 CAATGCCAACGGTCAGGTTCTCCAATGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGT
259 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
*
15151693 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCCACCCTCGGTCTGGTCTGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACC-C-GTC-GG---G-TC-----C--
* ** *
15151758 GGAATGAACTCCGTATGCTTAGACCTTAGGAATGAAACTCTATATTGCCTAAGCTCAACCCATGA
374 -G---GAA-TCCGTATGCTTAGA-C-TGGGAATG-AACTCCGTA-TGCCTAAG-TCAACCCACGA
* * * * * * * ** **
15151823 AATGGGCGT-CAGGTGCGCTCAGTCGGCTAGAGGGCCGGGATACACAAGCCGAGG-TCAACTTAG
429 AACGAGCGTGC-GG-GCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-CGG
* ** * * * * * * *
15151886 TTCCAGCTCGTACACTGC-GCCGATTCTGCT-ACGTATACCCTCGGTCCGATCTGCATCTTAAGA
491 GTCCCCCTC-TGC-GTGCTGTCGATCCTGCTGCCGCA-ACCCTCGGTCCGGTCTG-ATCTT-AGA
* ** * *
15151949 CTTGGGAATGGAGCTTTGGTAT-CC-AAGCCAACCAATCG-AATGAACGGGTGG-CGGGC--GT-
551 C-TGGGAAT-GAAC-TCCGTATGCCTAAGCCAACCGA-CGAAATGAGCGGG-GGACGGGCGGGTG
* * * * * * *
15152007 -GCAAGGCACTACAACCGGCTAGAGAAGACGAGATGCGGTAAGCCGTTGATCGATAGGGTGTTA-
611 GGC-GGGCACTAC-GCCGGCCAGAG-AGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAG
* *
15152070 GTGGGTTTGGGCACATCTTCATATTTTCTACAATGCCAATG-CATTTTTTATGGCTTTGTAGAAT
672 GTGGGTTTAGGCACATCTTCATA-TTTCTGC-ATGCCAATGCCA-TTTTTATGGC-TTGTA-AAT
* * **
15152134 TCATATAATGGCCCCTTAATGCCTTCACGTGAAG-TTCAATGTTAAGGCACGACTCGTTTTCTA-
732 TCATACAATGGTCCCTTAA-GCCTTCACGTGAAGTTTC-ATGGCAA-G-ACGACTCGTTTTCTAT
** * * * *** * *
15152197 TTTTCACACATTTTCGAAACTTTTTGCGATTCAAAATTTTTTAAAAATTCTTTCGAAAAAGGAGT
793 TTTTCA-TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCG--GAAGGAGT
*
15152262 TTTGGCCCCAAACTTGGTAGACGTGATCCTTA
854 TTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
15152294 TATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAGACGCGAAGTGTACAAGATTTTGTGACCA
1 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
15152359 TTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
66 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
15152424 AATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTC
131 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
15152489 AAGTACAAGCACCCATCGCACATCATGTGCACACACCCCCCGGCCCACCCGATCGTCGGAACCCT
196 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCC
* * *
15152554 AATGTCGACGGTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCCGATGAAGAAAAATGCGG
260 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGG
* ** *
15152618 TACCAGTGCATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GT-CGG---G-TC-----C--
* * *
15152683 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGA
374 -G---GAA-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * **
15152748 GAGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCTTGGG-TCGGCTAGGTCCCCC
434 GCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGTCCGGGTCCCCC
* * * * * *
15152812 TCTGCATGCTGCCAATCCTGCTCCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAAC
498 TCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * * *
15152877 TTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGTGAACGGGC-GGCGGGCAGGAACTACACCG
563 TCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG-GGACGGGCGGGTGGGCGGGCACTACGCCG
* * *
15152941 ACCAGAGAGAC-GGATGCGCAAAGCCGT-GATCGATAGGGTGGGAGGTGGGATTAGGCACATCTT
627 GCCAGAGAGACGGGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-T
* *
15153004 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACT
690 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
**
15153069 TCACGTGAAGTTTCATGTTAAGAC-A-TCGTTTTCTATTTT
755 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
15153108 NNNNNNNNNN
Statistics
Matches: 13811, Mismatches: 1666, Indels: 1030
0.84 0.10 0.06
Matches are distributed among these distances:
868 13 0.00
869 437 0.03
870 183 0.01
871 91 0.01
872 18 0.00
873 335 0.02
874 302 0.02
875 14 0.00
876 11 0.00
877 178 0.01
878 21 0.00
879 108 0.01
880 148 0.01
881 413 0.03
882 588 0.04
883 184 0.01
884 150 0.01
885 388 0.03
886 293 0.02
887 555 0.04
888 555 0.04
889 264 0.02
890 239 0.02
891 86 0.01
892 817 0.06
893 446 0.03
894 652 0.05
895 192 0.01
896 189 0.01
897 317 0.02
898 894 0.06
899 474 0.03
900 949 0.07
901 301 0.02
902 166 0.01
903 702 0.05
904 162 0.01
905 156 0.01
906 187 0.01
907 26 0.00
908 41 0.00
909 3 0.00
910 2 0.00
911 346 0.03
912 148 0.01
913 44 0.00
914 194 0.01
915 78 0.01
916 50 0.00
917 50 0.00
918 52 0.00
919 49 0.00
920 46 0.00
921 28 0.00
922 8 0.00
923 21 0.00
924 41 0.00
925 164 0.01
926 227 0.02
927 15 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGGTCCGGAATCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
AGAGGGGCGGGATGCGCAAGCCGGGGATCGTCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAATGAGCGGGGGACGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
Found at i:15138429 original size:25 final size:26
Alignment explanation
Indices: 15138378--15138429 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15138368 CCAGTCCGAT
* *
15138378 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
15138404 CTTAGAC-AGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
15138429 C
1 C
15138430 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:15139294 original size:26 final size:26
Alignment explanation
Indices: 15139258--15139310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15139248 CCGATCCAAT
*
15139258 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15139284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15139310 C
1 C
15139311 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15141073 original size:26 final size:26
Alignment explanation
Indices: 15141037--15141089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15141027 CTGGTCCGAT
15141037 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15141063 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15141089 C
1 C
15141090 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15142848 original size:26 final size:26
Alignment explanation
Indices: 15142819--15142871 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15142809 CCAGTCCGGT
*
15142819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15142845 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
15142871 C
1 C
15142872 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:15143753 original size:26 final size:26
Alignment explanation
Indices: 15143717--15143769 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143707 CCAATTCGAT
15143717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15143743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15143769 C
1 C
15143770 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15147317 original size:26 final size:26
Alignment explanation
Indices: 15147281--15147331 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15147271 CCGGTCTGAT
*
15147281 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15147307 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15147332 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15149099 original size:26 final size:26
Alignment explanation
Indices: 15149070--15149125 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15149060 CTGGTCTGAT
*
15149070 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15149096 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15149122 CTTA
1 CTTA
15149126 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15149986 original size:26 final size:26
Alignment explanation
Indices: 15149957--15150009 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15149947 CCGGTCCGAT
15149957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15149983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15150009 C
1 C
15150010 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15150897 original size:26 final size:26
Alignment explanation
Indices: 15150857--15150909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15150847 CCGGTTTGAT
*
15150857 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
15150883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
15150909 C
1 C
15150910 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:15152710 original size:26 final size:26
Alignment explanation
Indices: 15152674--15152726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15152664 CCGGTCCGAT
15152674 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15152700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15152726 C
1 C
15152727 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15154958 original size:26 final size:26
Alignment explanation
Indices: 15154922--15154974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15154912 GTTGACTTAG
*
15154922 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15154948 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15154974 G
1 G
15154975 ATGGACCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15155861 original size:26 final size:26
Alignment explanation
Indices: 15155825--15155875 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15155815 GTTGACTTAG
15155825 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* *
15155851 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTCCATTCCCAGTCTA
15155876 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15156663 original size:26 final size:26
Alignment explanation
Indices: 15156633--15156685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15156623 GTTGACTTAG
*
15156633 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
* *
15156659 GCATACGGAGTTCACTCCCATTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
15156685 G
1 G
15156686 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:15158078 original size:26 final size:26
Alignment explanation
Indices: 15158048--15158100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15158038 GTTGACTTAG
15158048 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
15158074 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15158100 G
1 G
15158101 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15162173 original size:26 final size:26
Alignment explanation
Indices: 15162139--15162188 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15162129 GGCTTAGGCG
*
15162139 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCACTCTAAGCA
*
15162165 TACGGAGTTCATTCCCACTCTAAG
1 TACGAAGTTCATTCCCACTCTAAG
15162189 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCACTCTAAGCA
Found at i:15162564 original size:901 final size:900
Alignment explanation
Indices: 15158712--15162815 Score: 5342
Period size: 902 Copynumber: 4.6 Consensus size: 900
15158702 GCATTTTTCT
* * *
15158712 TCGCCGGAGCATCGCCGGAGAACTTGACTGACGGCATTGGGGTTCCGACGATCGGCGGGGCCGGG
1 TCGCCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGG-GGGGCGGGG
* * *
15158777 GGGTGTGCGCACAGGATGTGCAATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTC
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * * *
15158842 ATCAAATCGTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAATA
130 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15158907 GCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
195 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15158972 TTTTTAGCTGAATTTTTTGGTGCAT-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
260 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
15159036 CCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCTGAACAGCAAAAAGTTTCCAAAATCGTG-AA
325 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* *
15159099 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
**
15159164 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
455 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** * *
15159229 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG-TCGGCATA--CTACCTGCCTGCCCGCCT
520 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTCCGCCCGCCCGCCCGCCT
** * * * * *
15159291 TTTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATGGGACCGGATCGA
584 GCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA
* * * * * * * * *
15159356 GGGTTGCAGTAGCAGGATCGATAGCACGTAGATGGGGACCTGGCCGATCCCCGGCTTGCCCATCC
649 GGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCT
* * * * *
15159421 CGCCCCTCTGACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTC
714 CGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGGATACGAAGTTC
* * * * * * *
15159486 ATTCCCAGTCTAAGCATTCGGAGTTCATTCCCAGTCTAAGCTCCGACCGGTCTGAGGGTTGCGAC
779 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * *
15159551 AGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTTGTCGGGGCACCG
844 AGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* ** * * * *
15159608 TCTCCGGAGCATCGCCATAGAACCTAACTGACGGCATTGGGGTTCCAGTGATTGGGGGGGCCGGG
1 TCGCCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGA-TCGGGGGG-C-GG
* *
15159673 GGGGGTGTGCGCACAGGATGTGC-AGTGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCC
63 GGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
15159737 CTCACCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
127 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
15159802 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTC
192 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15159867 GAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
257 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
15159932 CGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATG
322 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
*
15159997 AAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAA-GCTTGAA-GGACCATTGTATG
387 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATG
* * * * *
15160060 AATTTACAGGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAAAGTGCCTAAACCCACCTGC
451 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * **
15160125 CACCCTATCGATCCACGGCTTGCGC-T-CCGTCTCTCT-GC---CATAGT--GCCGGCCTCG-TT
516 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTCCGCCCGCC-CGCCC
* * * *
15160181 GCC-G-TTCTTT-AT--GTTGGCTTAGG-GTA-AGAGTTCAGTT-CCAGTCTAAGA-TGGATCAG
580 GCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATTGGACCAG
* * * *
15160237 ACCGAGGGTTGCGGTAGCAGGATCGACAGCGCGTAGAAGGGGACCCGTAACCGAT-CACGACTTG
644 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCG--ACCGATCCCCGACTTG
* *
15160301 CACATC-CGCGCCCTACTGGCC-GCTGAGCGCCCGCAGACGCTCATTTC----G-T--C-T-GGT
707 CACATCTCGC-CCCT-CTGGCCGGCTGAGC-ACC-CACACGCTCATTTCGTGGGTTGACTTAGG-
**
15160355 G-T--G-A---CATT---AG-----GCATACGGAGATTCATATCCGTC-CTAAGATCAGACCAGA
767 GATACGAAGTTCATTCCCAGTCTAAGCATACGGAG-TTCAT-TCCCACTCTAAGATCAGACCAGA
* * * **
15160404 CCTGTGGGTTGCGATAGCACATGCTGGCGCTCGAGCATGTCGTTGGTG-CGTATTTTTCTTCACC
830 CC-GAGGGTTGCGACAGCACATGCTGG-GCTCGAGCATGT-GTTGGTGCCGCATTTTTCTTCGTC
15160468 GGGGGCACCA
892 -GGGGCACCA
* * * ** * * *
15160478 TCGTCAGAG-AAC-CC-TCG-ACC-GA---ACGGCATTCGAGGTTCCGGTGATCGGGGGGTCAGG
1 TCGCCGGAGCATCGCCGGAGAACCTGACTGACGGCATT-GGGGTTCCGGCGATCGGGGGG-CGGG
*
15160535 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAACCTGGCCCTTATATTGGCCCCCCTAT-C
64 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATATTGG-CCCCCTATCC
* * * *
15160599 CTCATCAAA-CTCGGAGCCCACCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTTCT
127 CTCATCAAACCT-TGAG---AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15160663 GCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACA
188 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
15160728 CTTCTAGTTTTTAGCTGAATTTTTTTCTGCCTGCCAACAAAAATACAAGGATCACGTCTACCATG
253 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * *
15160793 TTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
318 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * *
15160858 CTTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTCCACGTGAAGGCTTAAGGGACCATTTT
383 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
15160923 ATGAAATTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
448 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** * *
15160988 TACCACCCTATCGATCCATAGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT--GCCCGCCCGC
513 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTCCGCCCGCCCGC
* * * *
15161051 TCG-CT-C--GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATTGGATCA
578 CCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
* * * * *
15161112 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCC-AGCTTC
643 GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTG
* * ** *
15161176 CGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACATAGGGATAC
707 CACATCTCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGGATAC
* *
15161241 -AGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
772 GA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGG
* * *
15161305 GTTGC-AGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
836 GTTGCGA-CAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACC
15161369 A
900 A
* * *
15161370 TCGCCGGAGCATCGCCGGAGAACCTGACTTG-CGGCATTGGGGTTCCGACGATCAGGGGGC-AGG
1 TCGCCGGAGCATCGCCGGAGAACCTGAC-TGACGGCATTGGGGTTCCGGCGATCGGGGGGCGGGG
* *
15161433 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTT
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
15161498 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTA
130 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
15161563 GCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATTGTCATAAAATCTTGTACACTTCTAG
195 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
15161628 TATTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTTCCAAGTTTGGGG
260 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
15161693 CCAAAAATCCTTCTGAAAAAATTTTACAAAATCCCGAACCGCAAAAAGTTACGAAAATCGTGAAA
325 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
15161758 AATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
15161823 TACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACC
455 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
15161888 CTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCC
520 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT--CCGCCCGCCCGCCCGCC
* *
15161953 TGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCG
583 TGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * *
15162018 AGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACACGACCGATCCCCGACTTGCACATC
648 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATC
* * *
15162083 TCGCCCCTCTGGCCGGCTGAGCACCTACACGCTCATTTCATGGGTTGGCTTAGGCG-TACGAAGT
713 TCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGG-GATACGAAGT
*
15162147 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGATCAGACCGAGGGTTGCG
777 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTGCG
* * **
15162212 GCAGCACATGCTGGGCTCGGGCAAATGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
842 ACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
15162271 TCGCCAGG-GCATCGCCGGAGAACCTGACCGACAGCTTTGGGGTTCCGGCAATCGGGGGGCGGGG
1 TCGCC-GGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCGGGG
* * * * *
15162335 GGGTGTGCGCACATGATATGTGATGGGTGATAGTACTTGGCCCTTATATTGGCCCCCTATCCCTA
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
15162400 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTA
130 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15162465 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATATTGTACACTTCGAG
195 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15162530 TTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
260 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * *
15162595 CCAAAACTCCTTTTGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTAAAAAATCATGAAA
325 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
15162660 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
15162725 TACAAGCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTACCTAAACCCACCTACCACC
455 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
15162790 CTATCTATCCACGGCTTACGCATCCC
520 CTATCGATCCACGGCTTGCGCATCCC
15162816 TCTGGCCGCT
Statistics
Matches: 2804, Mismatches: 294, Indels: 214
0.85 0.09 0.06
Matches are distributed among these distances:
861 36 0.01
862 45 0.02
863 19 0.01
865 268 0.10
866 107 0.04
867 21 0.01
868 37 0.01
869 27 0.01
870 24 0.01
871 7 0.00
872 13 0.00
873 21 0.01
874 22 0.01
875 37 0.01
876 52 0.02
877 2 0.00
878 2 0.00
880 4 0.00
881 4 0.00
882 4 0.00
884 1 0.00
885 2 0.00
886 49 0.02
887 40 0.01
888 19 0.01
889 22 0.01
891 4 0.00
892 27 0.01
893 415 0.15
894 36 0.01
895 33 0.01
896 88 0.03
897 57 0.02
898 220 0.08
899 71 0.03
900 149 0.05
901 369 0.13
902 450 0.16
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TCGCCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTCCGCCCGCCCGCCCGCCTGC
TTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
GTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCTCG
CCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGGATACGAAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
CACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
Found at i:15163753 original size:26 final size:26
Alignment explanation
Indices: 15163723--15163775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15163713 GTTGACTTAG
15163723 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
15163749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15163775 G
1 G
15163776 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15164667 original size:26 final size:26
Alignment explanation
Indices: 15164613--15164668 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
15164603 TGGGTTGACT
* **
15164613 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAACC
* *
15164639 TAAGCTTATGGAGTTCATTCCCAACC
1 TAAGCATACGGAGTTCATTCCCAACC
15164665 TAAG
1 TAAG
15164669 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAACC
Found at i:15165080 original size:903 final size:900
Alignment explanation
Indices: 15162861--15167771 Score: 6663
Period size: 903 Copynumber: 5.5 Consensus size: 900
15162851 GTTGACTTAG
* * * * *
15162861 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGAATATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
** * ** * * * * *
15162926 CTTAGGCATGTTCTGGTGCTGCATTTTTCTTC-ACCGGGCACCATCGTCGGAGTATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15162990 ACCTGACTGGCGACATTGGGGTTCCGGCGA-TCGGGGGG-TGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGACATTGGGGTTCC-GTGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * * *
15163053 AATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTATCACTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15163118 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATC
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15163183 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
* * * *
15163248 GCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
15163313 TTTTCAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15163378 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
15163443 TGGCATGAAGAAATATGAATATGTGCCTAAACTCACCTACCGCCCTACCGATCCACGGCTTACGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15163508 ATCCCGTCTC-CTTGGCCGGCGTA-G-T-G----CCCG--C-CCGCTCGTTTCGTA-GGTTGGCT
650 ATCCCGTCTCTC-TGGCCGACGTATGCTCGCCCACCCGCCCGCCGCTCGTTTCG-ACGGTTGGCT
* * * * *
15163561 TAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGACCGGACTGAGGGATGCGGCAGCAGGATCA
713 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
15163626 ACAGTATGCA-ATGGTGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGA
778 GCAGCATGCAGA-GGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * *
15163690 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
842 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15163749 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTGTGGCAGCACATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTAG
* * *
15163812 GCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATC-CCTGG
65 G-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC-GG
* * * *
15163876 AGAACCTGACCGATGACATTGGGGTTTCTGTGA-T-------C-GGGGGGTGTGAGCTCATGATG
128 AGAACCTGACCGACGACATTGGGG-TTCCGTGATTGGGGGGGCGGGGGGGTGTGCGCACATGATG
* *
15163932 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15163997 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15164062 ATGGGGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* *
15164127 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** *
15164192 AAATTTTATAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
15164257 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCGAT-AAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15164321 CATTGGCACACAGAAATATGATGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15164386 CGTATCCCGTCTCTCTGGCCGACGTACTGCTCGCCCACCCGCCTGCCTGCTCGTTTCGACGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTA-TGCTCGCCCACCCGCCCGCC-GCTCGTTTCGACGGTTG
* * * * *
15164451 GCTTAGGCCTATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAGGGTTACGGTAGCAGGA
710 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * * * * *
15164516 TCGGGAGCACGCATAGGGGGACTC-GACCGATCCCCGGCTTGCACATCCTGCCCCTATGCCCGGC
775 TCGGCAGCATGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * * *
15164580 TGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAA
839 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** * *
15164642 GCTTATGGAGTTCATTCCCAACCTAAGATCGGACTGGACCGAGTGTTGCGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * **
15164707 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
15164772 ACCTGACCGACGACATTGTGGTTCTGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCG-TGATTGGGGGGG-CGGGGGGGTGTGCGCACATGATGTG
* **
15164837 CGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15164902 ACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15164967 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* *
15165032 TGCATGCCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACGCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15165097 ATTTTAAAAAATCTCAAACCGCAAAAA-TTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCACAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15165161 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15165226 ATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15165291 GCATCCCGTCTATCTAGTCGGA-GTAGTGGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
648 GCATCCCGTCTCTCT-GGCCGACGTA-T-GCTCGCCCACCCGCCCG-CCGCTCGTTTCGACGGTT
** * * * *
15165354 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCACATTGAGGGTTGCGACAGTAGG
709 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
* * * * * *
15165419 ATCGGCAGCACGCAGAGGGTGACCTAGTCGATCCCCGGCCTGCGCATCCTGCCCCTCTGGTCGGG
774 ATCGGCAGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * *
15165484 TAAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15165546 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
** * * *
15165611 CTCGAACATGTGCTGGTGTCACATTTTTCTTTG-CTGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * * *
15165675 AACTTGATCGGCGGCATTGGGGTTCCG-GCAATGGGGGGGCCGGGGGGTGTGCGCCCATGATGTG
130 AACCTGACCGACGACATTGGGGTTCCGTG-ATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTG
*
15165739 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15165804 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15165869 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
* * *
15165934 TGCATGCCAACTAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
15165999 ATTTTAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATTT
454 ATTTT-AAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15166064 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15166129 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTCC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
15166194 GCATCCCGTCCCTTTGGACGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTA-TGCTCGCCCACCCGCCCG-CCGCTCGTTTCGACGGTTGG
* ** * * * *** *
15166259 CTTAGGCATACGGAGTTCATTCATAGTCTAAGATCAAACCAGACCGAGGGTCGCAATAGCAAGAT
711 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * *
15166324 CGGTAGCATGCAGAGGGGGACCCGGTTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTG
776 CGGCAGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * *
15166389 AGTGCCTGTACGCTAGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15166449 GCATACGGAGATCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
15166514 CTCGGGCATGTGCTGGTGCCACATTTTTCATCGTCGGGGCACCATCGTTGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
15166579 ACCTGACCGACGGTATTAGGGTTCCGACGATCGGGGGGGCGAGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCG-TGATTGGGGGGGCG-GGGGGGTGTGCGCACATGATGTG
*
15166644 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15166709 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15166774 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTCCACTTTGAGTTTTTAGCTAAAATT-TTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTGTTTT
* * * *
15166838 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCTTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15166903 AATTTTAAAAAATCCCAAACCACAAAAAGCTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15166968 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15167033 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15167098 GCATCCCATCTCTCTGGCCGACGTA-G-T-G-CCA---GCCCTTCCGCTCGTTTC-ATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTATGCTCGCCCACCCGCCC-GCCGCTCGTTTCGA-CGGTTGG
* * * * * * **
15167155 CTTAGGCATATGTATTTCATTCCCAGTCAAAGATTAGATCGGACCAAGGGTTGCGGCAGCAGGAT
711 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* ** * * * * *
15167220 CGGTAGCATGCAGAAAGGGACCCAGTCGATCCCCGACTTGTGCATCCCGCCCCACTGGCCAGCTG
776 CGGCAGCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
15167285 AGCGCCTGCACGCTTGTTACGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15167345 GCATATGGAGTTCATTCCCGGTCTAAGATCGGACCAGACCGAGGGTTAC-GCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
** * * * *
15167409 CTCGGGCATGTGCTGGTGTAACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
15167474 ACCTGACCGGCGGCATTGCGGTTCGGGTGATTAGGGGGACCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGACGACATTGGGGTTC-CGTGATT-GGGGGGGCGGGGGG-GTGTGCGCACATGATGT
* *
15167539 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15167604 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
15167669 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
15167734 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
15167772 GTCCAAGTTC
Statistics
Matches: 3560, Mismatches: 403, Indels: 111
0.87 0.10 0.03
Matches are distributed among these distances:
881 83 0.02
882 372 0.10
883 1 0.00
884 1 0.00
885 1 0.00
887 6 0.00
888 82 0.02
889 50 0.01
890 3 0.00
892 9 0.00
893 303 0.09
894 6 0.00
895 97 0.03
896 373 0.10
897 95 0.03
899 1 0.00
900 1 0.00
902 289 0.08
903 896 0.25
904 609 0.17
905 278 0.08
906 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGACATTGGGGTTCCGTGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTATGCTCGCCCACCCGCCCGCCGCTCGTTTCGACGGTTGGCTTAG
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
GCATGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15165556 original size:26 final size:26
Alignment explanation
Indices: 15165520--15165572 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15165510 GTTGACTTTG
15165520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15165546 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15165572 G
1 G
15165573 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15166452 original size:26 final size:26
Alignment explanation
Indices: 15166423--15166475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15166413 GTTGACTTAG
*
15166423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
15166449 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
15166475 G
1 G
15166476 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:15171961 original size:900 final size:901
Alignment explanation
Indices: 15167777--15174768 Score: 8970
Period size: 899 Copynumber: 7.8 Consensus size: 901
15167767 TACCAGTCCA
* * * *
15167777 AGTTCATTCCCAGTCTAAGAGT-GGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
1 AGTTCATTCCCAGTCTAAGA-TCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * * * *
15167841 GAGGGGGACCTGACCAATCCCCGGCTTGTGCATCCCGCCCCTTTGGTCAGCTGAGCACCCGCACT
65 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * * *
15167906 CTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTC
130 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
15167971 CCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGTTGGT
195 CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * *
15168036 GCCGCATTTTTCTTCGTCGGGGCACCATTTCTGGAGCTTCACCGGAGAACCTGACCGATGGCATT
260 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * *
15168101 ---G----G-C-AT---------TGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATA
325 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15168148 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCTTTAAAGAGCATTT
390 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
15168213 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTTAAAT
455 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* * * * *
15168277 GGTTAGAAAATCATGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATAC
520 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
15168342 AAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAAC
585 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
15168407 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
650 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ** *
15168472 AGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACATAAAAATATGA
715 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * *
15168537 AGTTGTACCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCC-
780 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
15168601 AGCGTAGTGCCCGCCCGCCCG--C-TTGCTTGTTTCATCGGTTGGCTTAGGCATACGG
845 A-CGTAGTGCCCGCCCGCCCGCCCGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * * *
15168656 AGTTGATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTAG-GGCAGCAGGATC-AGCAGCACGT
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-GCGACAGCAGGATCGA-CAGCACGC
* * ** *
15168719 AGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCACCCACAC
64 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * **
15168784 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACAAAGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*
15168849 CCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
194 CCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** ** *
15168913 GTGCCGCATTTCT-TTCGTCAGGGCACCATCATCGGAGCATCGTCGGAGGACCTGACC-AGCGGC
258 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA-CGGC
* * * *
15168976 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTTGTGCACACATGATGTGCAATGGGTGCCGAT
322 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGT
** * * *
15169041 ACTTGAACCTTATACTGGCCCCCTATCACTCATCAAACCAT-GAGAACTCACACCCCCTTAATGA
385 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGA
* *
15169105 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGATACTTTTT
449 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * * **
15169170 TCAAATGGCCACAAAATATTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATAACAACAA
514 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*** * * * * *
15169235 AAATACAAGGATCACGTCTACTGGGTTTGGGCCCAAAAATCATTCCAAAAAAATTTAAAAAAATC
579 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * * * *
15169300 CTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCAGGAAACTTC
644 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
15169365 ACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGCCATGCAAAA
709 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
15169430 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTC
774 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
15169495 TGGCTGACGTAGTGCCCGCCCGGCC-ACC--TGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
839 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
15169555 AGTTCATTCCCAGTCAAAGATCAGACCAGATCAAGGGTTGC-AGCAGTAGAATTGACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCA
* * *
15169619 GAGGGGGACCCGACCGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
65 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* *
15169684 CTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTT
130 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * ** * * *
15169749 CCAGTCCAAGATTGGACCGGACAAAGGGTTGCGGCAGCACATGTTGAGCTCGGGCATGTGCTGGT
195 CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
15169814 GCTGCATTTTTCTTCGTCGGGGCACCAT---C---GC-T----GGAGAACCTGACAGGCGACATT
260 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* *
15169868 GGGGCTCCGGA-GATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-
325 GGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
15169931 TGGACCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGTA
388 TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
15169996 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
452 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* *
15170061 AATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAA
517 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
15170126 TACAAGGATCACGTCTACCAAGTTTGGGGCCAATACGCTTTTCGAAGAAATTTTAAAAAATCCCA
582 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
15170191 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
647 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
15170256 TGAAGGATTAAGGGACCAATGTATGAATGTACAAGCCATAAAAATGGCATTGGCACTCAGAAATA
712 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
** * * * * *
15170321 CAAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCTCGTTTATCTAG
777 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
**
15170386 CCGACGTAGTGCCTGCCCGCCAGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
842 CCGACGTA--G--TGCCCG-C--CC-GCCCGCCCG-TTGCTCGTTTCGTCGGTTGGCTTAGGCAT
15170451 ACGG
898 ACGG
* * *
15170455 AGTTCATTCCCAGTCTAAGATCAGACCA-AACTGAGGGTTGC-AGCAACAGGATCGGCAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGA-CAGCAGGATCGACAGCACGC
* * * * * *
15170518 AAAGGGGAACCCGATCGAT-CCCTGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
64 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
15170582 GCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** *
15170647 CCCAGTCCAAGATCAGA-TCGGATTGAGGGTTGTCG-CAGCAAATGCTGGGCTCGGGCATGTG-T
194 CCCAGTCTAAGATCAGACT-GGACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCT
* * *
15170709 CGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGTAT-AGCCGGAGAACCTGACCGACG
257 -GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCA-CCGGAGAACCTGACCGACG
* *
15170773 GCATTAGGGTTCCGATGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
320 GCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
15170838 GTACTGGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCTTTAAAG
383 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
15170903 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTT
448 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* * * * *
15170968 TTCAAATGGTCACAAAATCTTATACATTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAAAA
513 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
15171033 AAAATACATGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
578 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* **
15171098 CCCGAACCACAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
643 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
15171163 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCAATGGCACGCAGA
708 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
15171228 AATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
773 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
15171293 CTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTGTGCTCGTTTCGTCGGTTGCCTTAGGCATACGG
838 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGT-TGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * **
15171358 AGTTCATTCCCAGTCTAAGATCATACCAGATCGAGGGTTACGATAGCAAGATCGACAGCACATAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
** ** * * *
15171423 AGGGGGACCCGGTCGATCCTTGGCTT-CTGCATCCCACCCTTCTGGCCGGTTGAGCACCCGCACG
66 AGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
15171487 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCAGGATACGGAGTTCATTC
130 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
15171552 CCAGACTAAGATCGGA-TGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
195 CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
15171616 GTCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
260 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * *
15171681 GGGGTTCCGACGATCGGGGGGCC-GGGGATGTGCACAAATGATGTGCGATGGGTGCTGGTACTTG
325 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
15171745 GCCCATATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTTAAAGAGTATTT
390 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
15171810 GAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
455 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* * * *
15171875 GGTCACAAAATCTTGTACAATTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
520 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** *
15171940 AAGGATCATGTCTACCAAGTTTGGGGTGAAAA-TGCCTTCCGAAAAAATTTTAAAAAATCCCAAA
585 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
15172004 CCGTAAAAAGTTTCAAAAATTATGAGAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
649 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
15172069 AAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
714 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * *
15172134 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCATCTATTTGGCC
779 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
15172199 GAGGTAGTGCCCGCCCGCCAGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-G
844 GACGTAGTGCCCGCCCGCCCGCCCG-TTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
15172257 AGTTCATTCCCAGTCTAAGATC-GAATC-GATTGAGGGTTGC-AGCAGTACGATCGACAGCACGT
1 AGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGA-CAGCAGGATCGACAGCACGC
** * * * * * * *
15172319 AGAGGGGGACCCGGTCGATCCTC-GCTT-AGCATCCCGCCCCTCCGGTCGACTGAGCCCCCGTAC
64 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* *
15172382 GCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * * *
15172447 CTCAGTCTAAGATCAGACTGGACTAAAGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGG
194 CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
15172512 TGCCGCATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCACCGGAGAACTTAACCGGCGGCA
259 TGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCACCGGAGAACCTGACCGACGGCA
* * *
15172576 TTGGGGTTTCGATGATCGAGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
323 TTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
15172641 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCA
387 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
15172706 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
452 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
*
15172771 AATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
517 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
15172836 TACAAGGATCACGTCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTATAAAAAATCTCG
582 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * * * *
15172900 GACCGTAAAAAG-TTC----A-CGTGAGAAATAGAAAACGAGTTGTCTTGCGATGAAACTTCACG
647 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
** * *
15172959 TGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAACTA
712 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
15173024 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTAG
777 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** *
15173089 CCGACGTAGTGCCCGCCCGTCCGCCTGCACGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGG
842 CCGACGTAGTGCCCGCCCG--C-CC-GCCCG-TTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
15173154 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATC-AGTAGCATGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGA-CAGCACGCA
* *
15173218 GATGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG-CCC-CT------CT--G-A-----ACG
65 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
15173267 CTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
130 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
15173332 CCAGTTTAAGATCGGA-TCGGACCGAGGCTTACGGCAACACATGCTGGGCTCGAGCATGTGCTGG
195 CCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** *
15173396 TGCAGCAATTTTCTTCACCGGGGCACCATCGCTGGAG-A--ACC--AG-ACC-G-CCGA---CAT
259 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCAT
*
15173450 TGGGGTTTCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
324 TGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
15173515 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACA-CCCCTTAAAGAGCAT
388 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
15173579 TTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
453 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * * * *
15173644 ATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTATCCATGCCAACAAAAAT
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
15173709 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTATAAAAAATCCCAA
583 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * *
15173774 ACCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGT
648 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
**
15173839 GAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
713 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
15173904 AAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTAGC
778 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
15173969 CGACGTAGT----GCCCGCCCGCCCG-T--TCATTTCGTCGGTTGGGTTAGGCATACGG
843 CGACGTAGTGCCCGCCCGCCCGCCCGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * *
15174021 AGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGC-AGCAGCAGGATCGGCAACATGC
1 AGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGA-CAGCAGGATCGACAGCACGC
** * * * *
15174084 AGAGGGTAACCCGATCGATCCCC-TCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTAC
64 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * * * * *
15174148 GCGCATTCCGTGGGTTGACTTAGGCATACGGACTTCATTCCCTGTCTAAGCATACAGCGTTCATT
129 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** *** * **
15174213 CTCAGTCCAAGATTGGACCAAACCGAGGGTTGCGATAGCACATGCTGGGCTCAAGCATGTGCTGG
194 CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * * * *
15174278 TGCCACATTTTTCTTTTTCGTGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGATGGCAT
259 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCAT
* * *
15174343 TGGGGTTCCGACGATCGGGGGGCGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACT
324 TGGGGTTCCGACGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
15174408 AGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
388 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
** *
15174473 TTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAA
453 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
*
15174538 ATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
15174603 ACAAGGATCACGTTTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGA
583 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* ** * * * *
15174668 ACCACAAAAAGTTTGGAAAATCAAGAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCATGC
648 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15174733 GAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCC
713 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
15174769 TAATCCCACC
Statistics
Matches: 5360, Mismatches: 612, Indels: 267
0.86 0.10 0.04
Matches are distributed among these distances:
866 13 0.00
867 99 0.02
868 2 0.00
871 4 0.00
872 166 0.03
873 158 0.03
874 5 0.00
875 5 0.00
876 4 0.00
877 2 0.00
878 45 0.01
879 413 0.08
880 1 0.00
881 4 0.00
882 136 0.03
883 3 0.00
884 144 0.03
885 4 0.00
886 1 0.00
887 7 0.00
888 438 0.08
889 43 0.01
890 8 0.00
892 187 0.03
893 104 0.02
894 282 0.05
895 3 0.00
896 139 0.03
897 156 0.03
898 275 0.05
899 1033 0.19
900 626 0.12
901 1 0.00
902 2 0.00
903 222 0.04
904 118 0.02
905 1 0.00
906 2 0.00
907 6 0.00
909 11 0.00
910 29 0.01
911 456 0.09
912 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCCGCCCGTTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
Found at i:15172442 original size:26 final size:26
Alignment explanation
Indices: 15172405--15172457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15172395 GTTGACTTAG
15172405 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACTGAGTTCATTCCCAGTCTAA
*
15172431 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
15172457 G
1 G
15172458 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:15173328 original size:26 final size:26
Alignment explanation
Indices: 15173292--15173341 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15173282 GACTTAGGCG
*
15173292 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
15173318 TACGGAGTTCATTCCCAGTTTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15173342 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15174903 original size:26 final size:26
Alignment explanation
Indices: 15174867--15174919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15174857 GATGGCTTAG
15174867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15174893 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15174919 G
1 G
15174920 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15176559 original size:26 final size:26
Alignment explanation
Indices: 15176523--15176575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15176513 GTTGACTTAG
*
15176523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15176549 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15176575 G
1 G
15176576 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:15177579 original size:11 final size:11
Alignment explanation
Indices: 15177563--15177595 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15177553 TGTCAGTTAC
15177563 CATCGCTGGAG
1 CATCGCTGGAG
15177574 CATCGCTGGAG
1 CATCGCTGGAG
*
15177585 CATCGCCGGAG
1 CATCGCTGGAG
15177596 AACTTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGCTGGAG
Found at i:15178756 original size:17 final size:17
Alignment explanation
Indices: 15178734--15178773 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
15178724 GGACAGCACT
*
15178734 TGCTGGGCTCGTGCATG
1 TGCTGGGCTCGGGCATG
15178751 TGCTGGGCTCGGGCATG
1 TGCTGGGCTCGGGCATG
15178768 TGCTGG
1 TGCTGG
15178774 TGTCACATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.05, C:0.23, G:0.45, T:0.28
Consensus pattern (17 bp):
TGCTGGGCTCGGGCATG
Found at i:15179553 original size:26 final size:26
Alignment explanation
Indices: 15179517--15179567 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15179507 TGACTTAGGG
*
15179517 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTATAAGC
15179543 ATACGGAGTTCATTCCCAGTATAAG
1 ATACGGAGTTCATTCCCAGTATAAG
15179568 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTATAAGC
Done.