Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 96 of 190
Found at i:15180400 original size:26 final size:26
Alignment explanation
Indices: 15180370--15180422 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15180360 GTTGACCTAG
*
15180370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15180396 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15180422 G
1 G
15180423 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15181376 original size:160 final size:159
Alignment explanation
Indices: 15181108--15181458 Score: 425
Period size: 160 Copynumber: 2.2 Consensus size: 159
15181098 CATCGATTGG
* * * *** *
15181108 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGTTGTAGGAT
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGAT
* * **
15181173 CGGCAGCATGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGTATCCTGCCCCTCTGG-TCAGCT
66 CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGTATCCCACCCCTCTGGCT-AGCT
** *
15181237 GAGTGCCCACACACTCTTTTTCGTGGGTTGA
130 GAGCACCCACACACTC-GTTTCGTGGGTTGA
* * *
15181268 CTTCGGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGAT
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGAT
* * * * * * *
15181333 TGGCAGCACGTAGAGGGGGACCTGACCGATCCCTGGCTTGCGTATCCCACCCTTTTGGCTAGCTG
66 CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGTATCCCACCCCTCTGGCTAGCTG
* *
15181398 AGCACCCGCACGCTCGTTTCGTGGGTTGA
131 AGCACCCACACACTCGTTTCGTGGGTTGA
* *
15181427 CTTAGGCATATAGAGTTCATTCCCACTCTAAG
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAG
15181459 CATACGGAGT
Statistics
Matches: 160, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
159 41 0.26
160 118 0.74
161 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGTATCCCACCCCTCTGGCTAGCTG
AGCACCCACACACTCGTTTCGTGGGTTGA
Found at i:15181468 original size:26 final size:26
Alignment explanation
Indices: 15181439--15181536 Score: 160
Period size: 26 Copynumber: 3.8 Consensus size: 26
15181429 TAGGCATATA
* *
15181439 GAGTTCATTCCCACTCTAAGCATACG
1 GAGTTCATTCCCAGTCTAAGCAAACG
15181465 GAGTTCATTCCCAGTCTAAGCAAACG
1 GAGTTCATTCCCAGTCTAAGCAAACG
*
15181491 GAGTTCATTCCCAGTCTAAGCAAACA
1 GAGTTCATTCCCAGTCTAAGCAAACG
*
15181517 GAGTTCATTCCCAATCTAAG
1 GAGTTCATTCCCAGTCTAAG
15181537 ATTGGACCGG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCAAACG
Found at i:15181696 original size:237 final size:237
Alignment explanation
Indices: 15181281--15181721 Score: 571
Period size: 237 Copynumber: 1.9 Consensus size: 237
15181271 CGGCATACAA
* * * ** *
15181281 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATTGGCAGCACGTAG
1 AGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAA
* * * * * * *
15181346 AGGGGGACCTGACCGATCCCTGGCTTGCGTATCCCACCCTTTTGGCTAGCTGAGCACCCGCACGC
66 AAGAGGACCCGACCGATCCCTGGATTGCGCATCCCACCCTTTTGGCCAGCTGAGCACCAGCACGC
* *
15181411 TCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCC
131 TCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCC
15181476 CAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGCAAACAG
196 CAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGCAAACAG
* * * ** *
15181518 AGTTCATTCCCAATCTAAGATTGGACCGGACTGATGGTTGTGGTAGCAGGATCGGTAGCACACAA
1 AGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAA
* * * * **
15181583 AAGAGGACCCGACCGAT-CCTCGGATTGCGCATCCCGCCCTTTTGTCCGGCTGAGCTCCAGCATT
66 AAGAGGACCCGACCGATCCCT-GGATTGCGCATCCCACCCTTTTGGCCAGCTGAGCACCAGCACG
* * * *
15181647 CTTGTTTCGTGGGTTGACATAGGCATACGA-AGTTCATTCCCAGTCTAAGCATATGGAGTTCTTT
130 CTCGTTTCGTGGGTTGACATAGGCATA-GAGAGTTCATTCCCACTCTAAGCATACGGAGTTCATT
15181711 CCCAGTCTAAG
194 CCCAGTCTAAG
15181722 ATCGGATCGG
Statistics
Matches: 171, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
236 3 0.02
237 167 0.98
238 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (237 bp):
AGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAA
AAGAGGACCCGACCGATCCCTGGATTGCGCATCCCACCCTTTTGGCCAGCTGAGCACCAGCACGC
TCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGCAAACAG
Found at i:15181698 original size:26 final size:26
Alignment explanation
Indices: 15181669--15181721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15181659 GTTGACATAG
15181669 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
15181695 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15181721 G
1 G
15181722 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15182606 original size:26 final size:26
Alignment explanation
Indices: 15182570--15182622 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15182560 GTTGACTTTG
15182570 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15182596 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15182622 G
1 G
15182623 ATCAAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15183261 original size:904 final size:902
Alignment explanation
Indices: 15181650--15183729 Score: 3062
Period size: 904 Copynumber: 2.3 Consensus size: 902
15181640 CAGCATTCTT
*
15181650 GTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCTTTCCCA
1 GTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
* * *
15181715 GTCTAAGATCGGATCGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCGGGCATGTGTTGATGTC
66 GTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* *
15181780 GCATTTTTCTTCGTCA-AGGCACCATCGCCGGAGCATTGTCGGAGAACCTGACCGGCGGCATTGG
131 GCATTTTTCTTCGT-AGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* *
15181844 GGTTCCGACGATCG-GGGGGTC-GGGGGGTTTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
195 GGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15181907 GCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCTTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
15181972 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
325 GAGATTTTACAGGTTTACCGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAAT
* *
15182037 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATAC
390 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATCCCAAAAAAAATAC
* * *
15182102 AAGGATCATGTCTACCAAGTTTGGGCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACC
455 AAGGATCACGTCTACCAAGTTTGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC
* **
15182167 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTTGTGAA
520 GCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
15182232 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCAGGCAGAAATATGAA
585 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAA
* * *
15182297 GATGTTCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGG
650 GATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGA
* ** *
15182362 CGTAGTGCCCACCCGTCCGCCAGCCCGTTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATT
715 CGTAGTGCCCACCCGCCCGCCAGCCCACTCGCTTCATCGATTGGCTTAGGCATACGGAGTTCATT
*** * * *
15182427 CCTAGTCTAAGATTGGACCAGACCAAGGGTTATGGT-TGTAGGATCGGCAGCATGCAGAGGGGGA
780 CCTAGTCTAAGATCAAACCAGACCAAGGG-T-TGCTATGTAGGATAGGCAGCACGCAGAGGGGGA
* * *
15182491 CCCGGCCGATCCCC-GACTTGCACATCCTGCCCCTCTGGTC-GACGGAGCGCCCACACACTC
843 CCCGACCGATCCCCAG-CTTGCACATCCCGCCCCTCTGGTCTG-CGGAGCACCCACACACTC
* * * **
15182551 TTTTCGTGGGTTGACTTTGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
1 GTTTCGTGGGTTGACATAGGCATACGA-AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
** * * * *
15182615 AGTCTAAGATCAAATTGGACCGATGGTTGCAGCAGCACATGCTGAGCTTGGGCATGTGTTGGTGC
65 AGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
* *
15182680 CGCATTTTTCTTCGTAGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGG
130 CGCATTTTTCTTCGTAGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
*
15182745 GGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
195 GGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
15182810 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
260 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
15182875 GAGATTTTACAGGTTTACCGCCAGTAGCCATTAAAGTGTCTGAAATGCGGATACTTTTTTCAAAT
325 GAGATTTTACAGGTTTACCGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAAT
* *
15182940 GGTCACAAAATCTTGTACATTTCGAA-TTTTTCA-CTGAATTTTTTTGTGCATCCCAAAAAAAAT
390 GGTCACAAAATCTTGTACACTTC-AAGTTTTT-AGCTGAAATTTTTTGTGCATCCCAAAAAAAAT
* *
15183003 ACAAGGATCACGTCTACGAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGA
453 ACAAGGATCACGTCTACCAAGTTT-GGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGA
* *
15183068 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
517 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15183133 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATAT
**
15183198 GAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGC
647 GAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGC
* ** *
15183263 CGACGTAGTGCCCGCCCGCCCGCTTGCCCACTCGCTTCGTCGATTGGCTTAGGCATACGGAGTTC
712 CGACGTAGTGCCCACCCGCCCGCCAGCCCACTCGCTTCATCGATTGGCTTAGGCATACGGAGTTC
** * *
15183328 ATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGCTACTGTAGGATAGGTAGCACGCCGAGGGG
777 ATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTGCTA-TGTAGGATAGGCAGCACGCAGAGGGG
* * ** * * * *
15183393 GACCCGATCGATCCCCAGTTTGTGCATCCCGGCCCTCTGGTCTGCTGAGCACCCGCACGCTC
841 GACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGTCTGCGGAGCACCCACACACTC
* * *
15183455 GTTTCATGGGTTGACCTAGGCATACGAAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
** * * *
15183520 GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCTTGTGCTAGTGCC
66 GTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* * * * * * * *** *
15183585 ACTTTTTTCTTCATCGGGGCAGCATCACCGGAGCATCGCCGGAGAACCTGACCAATGGCGTTGGG
131 GCATTTTTCTTCGTAGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * ** * *
15183650 GTTCTGGCGATCGAGGGGGTCGGGAGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTAGTTAG
196 GTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
15183715 CCCTTATATTGGCCC
261 CCCTTATATTGGCCC
15183730 TTATATTTTG
Statistics
Matches: 1049, Mismatches: 118, Indels: 21
0.88 0.10 0.02
Matches are distributed among these distances:
900 2 0.00
901 185 0.18
902 9 0.01
903 241 0.23
904 609 0.58
905 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
GTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
GTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
GCATTTTTCTTCGTAGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTACCGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATCCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCG
CAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAG
ATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGAC
GTAGTGCCCACCCGCCCGCCAGCCCACTCGCTTCATCGATTGGCTTAGGCATACGGAGTTCATTC
CTAGTCTAAGATCAAACCAGACCAAGGGTTGCTATGTAGGATAGGCAGCACGCAGAGGGGGACCC
GACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGTCTGCGGAGCACCCACACACTC
Found at i:15183504 original size:26 final size:26
Alignment explanation
Indices: 15183474--15183526 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15183464 GTTGACCTAG
15183474 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
15183500 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15183526 G
1 G
15183527 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15185152 original size:26 final size:26
Alignment explanation
Indices: 15185116--15185168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15185106 GTTAACTTAG
*
15185116 GCATCCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15185142 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15185168 G
1 G
15185169 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15186059 original size:26 final size:26
Alignment explanation
Indices: 15186019--15186071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15186009 GTTGACTTAG
*
15186019 GCATACGGAGATCATTTCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
* *
15186045 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
15186071 G
1 G
15186072 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:15186073 original size:903 final size:897
Alignment explanation
Indices: 15183738--15186919 Score: 4329
Period size: 903 Copynumber: 3.5 Consensus size: 897
15183728 CCTTATATTT
* * * * *
15183738 TGCATGCCAACAAAAATACACGGATCACGTCTACCAAGTTTGGGGCCAAACCTCTTTCTGAAATA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15183803 ATTTTAAAAAATCCCGAACCGCAAAAA-TTTTTCAAAATCATGAAAAATAGAAAATGAGCCGTCT
66 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTT-AAAATCATGAAAAATAGAAAACGAGTCGTCT
* ** * *
15183867 TGTCATGAAACTTCTTGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGC
130 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15183932 A-TAGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCGACAGCTTG
195 ATTA-GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
15183996 CGTATCCCATCTCTCTGGCCGACGTA--GTGCCCA----CCCGCTCGTTTCGTCGGTTGGCTTAG
259 CGCATCCCATCTCTCTGGCCGACGTAGTGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
15184055 GCATATGGAGTTCATTCCCAATCTAAGATCGAACTGGATCAAGGGTTGTGGCAGCAAGATCGACA
324 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * **
15184120 GCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTACGCATCAT-GCCCCTCTGGCCGGCTGAGTG
389 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-TCGCCCCTCTGGCCGGCTGAGCA
* * * *
15184184 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGGA
453 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
* *
15184249 GTTAATTCCCAATCTAAGATC-GTACCA-GACCAAGGGTTGTGGTAACACATGCTAGGCTCGGGC
518 GTTCATTCCCAATCTAAGATCAG-A-CAGGACCAAGGGTTGTGGTAGCACATGCTAGGCTCGGGC
* ** * * * **
15184312 ATGTGCTGGTGCTACATTTTTCTTAGCCGGGGCACCGTCGTCGGAGCATCGTCGGAGAACCTGAC
581 ATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * *
15184377 CGGCAGCTTTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG-AGATGGG
646 CGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCA-ATGGG
* * * *
15184441 TGCTGGCACTTGGCGCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
710 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
15184506 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
775 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15184571 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
840 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
*
15184629 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
15184693 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTT
66 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15184758 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * *
15184823 TTGGCACACAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
196 TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
15184888 CATCCCGTCTCTCTGGCCGGCATAATGCCCGTCCGTCCGCCCGCCCGCTTGTTTCGTCTGTTGGC
261 CATCCCATCTCTCTGGCCGACGT-A-G--TGT--GCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
15184953 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTAAGGGTTGCGGCAGCAGGATT
320 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATC
* * * *
15185018 GGCAGCACGCAGAGGGGGACCCGGCCGATACCCGACTTGCACATC-CTGCCGCTCTGGCCGGCTG
385 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTC-GCCCCTCTGGCCGGCTG
* * * *
15185082 AGCACCCGTACGCTCATTTAGTGGGTTAACTTAGGCATCCGGAGTTCATTCCCAATCTAAGCATA
449 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
* * *
15185147 CGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGATTGTGGTAGCACATGCTGGGCTCGG
514 CGGAGTTCATTCCCAATCTAAGATCAGACAGGACCAAGGGTTGTGGTAGCACATGCTAGGCTCGG
*
15185212 GCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACGTG
579 GCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
*
15185277 ACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGGCCGGGGGGTGTGTGCACATGATGTGCAATG
644 ACCGGCGGCATTGGGGTTCCGACGATCGA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCAATG
**
15185341 GGTAATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
708 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
15185406 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGA
773 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
15185471 CACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTA
838 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * * * ** *
15185531 TGCATTCCAACAAAAATACAAGGCTCATGTCTACCAAGTTTGGGACCAAAACTTCTTATGAGAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15185596 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTTAAAATCATGAGAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15185661 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
15185726 TTAGAATGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
196 TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15185791 CATCCCATCTCTCTGGCCGGCGTAGTGCCCAGTCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
261 CATCCCATCTCTCTGGCCGACGTAGT-----GT-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
* * *** * * *
15185856 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGTAGTAGGATC
320 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATC
* * * * * *
15185921 GGTAGCACGCAGTGGGGGACCTGGCCGATCCCCGGCTTGCCCATCTCGCCCCTTTGGCCGACTGA
385 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGA
* * * *
15185986 CCACCCGCGCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCATTTCCAATCTAAGCATAC
450 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
* * ** *
15186051 GGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGG
515 GGAGTTCATTCCCAATCTAAGATCAGACAGGACCAAGGGTTGTGGTAGCACATGCTAGGCTCGGG
* * *
15186116 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGAAGAACCTGA
580 CATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
* * * *
15186181 TCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCAGAGGGGTGTGCGCACATGATGTGCGATGGG
645 CCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGG
* *
15186246 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCTT
710 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
15186311 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
775 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
15186376 CTTTCTTAAAATGGTCACAAAATCTTCTACACTTTGAGTTTTTAGCTTAATTTTTTTGA
840 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-A
** * * * * * *
15186435 -GCGCGCCAAAAAAAATACAAAGATCACATCTACCATGTTTGGGGTCAAAACTCCTTCCAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * * * *
15186499 ATTTTAAAAAATCCCGAAACACTAAAAGTTTTGAAAATCCTGAAAAATAAAAAATGGGTCATCTT
66 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15186564 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAGTTTACAAGCCATAAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
15186629 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTTTTGCG
196 TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15186694 CATCCCGTCTCTCTGGCCGACGTAGTGT---C-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
261 CATCCCATCTCTCTGGCCGACGTAGTGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
15186755 ATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGTAGGATCGGCAGC
326 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
15186820 ATGCAGAGGGTGACCCGACCGTTCCCCAGCTTGTGCATCCCACCCCT-TGGCCGGCTGAGCA-CC
391 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCC
**
15186883 GCACGCTCATTTTATGGGTTGACTTAGGCATACGGAG
456 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
15186920 GGGTGGGCGC
Statistics
Matches: 2015, Mismatches: 247, Indels: 58
0.87 0.11 0.03
Matches are distributed among these distances:
890 192 0.10
891 95 0.05
892 12 0.01
893 122 0.06
894 1 0.00
896 2 0.00
898 5 0.00
901 3 0.00
902 583 0.29
903 995 0.49
904 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCATCTCTCTGGCCGACGTAGTGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTT
CATTCCCAATCTAAGATCAGACAGGACCAAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATGTG
TTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
Found at i:15186525 original size:27 final size:25
Alignment explanation
Indices: 15186495--15186551 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
15186485 CTCCTTCCAA
*
15186495 AAAAATTTTAAAAAATCCCGAAACACT
1 AAAAATTTT-AAAAATCCCGAAA-AAT
* * *
15186522 AAAAGTTTTGAAAATCCTGAAAAAT
1 AAAAATTTTAAAAATCCCGAAAAAT
15186547 AAAAA
1 AAAAA
15186552 ATGGGTCATC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 6 0.24
26 11 0.44
27 8 0.32
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.23
Consensus pattern (25 bp):
AAAAATTTTAAAAATCCCGAAAAAT
Found at i:15188658 original size:26 final size:26
Alignment explanation
Indices: 15188622--15188674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15188612 CTAGTCCGAT
* *
15188622 CTTAAACTGGGAATGAATTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
15188648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15188674 C
1 C
15188675 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15188875 original size:891 final size:866
Alignment explanation
Indices: 15186924--15193029 Score: 6303
Period size: 878 Copynumber: 7.0 Consensus size: 866
15186914 ACGGAGGGGT
* * *
15186924 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGAAT-GGCCGGTTCCCCCTCTACG
1 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGGCCGG-TCCCCCTCTACG
* * * * * * * * *
15186988 TGCTGTCGATCCTACTACAGCAACCCTCGGTCCGGT-TCAATCTTAGATTTGGAATGAACTACGT
64 TGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGT
** * * * *
15187052 ATGCCTAAGCCAACTAATAAAACAAGCG-GGTGGGTGGGCGGGCACTACGTCGGCCAGAGAGACG
128 ATGCCTAAGCCAACCGATGAAAC-AGCGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * **
15187116 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTATGT
192 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
15187181 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCATGTGAAGTTTC
257 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** * * * * *
15187246 ATATCAAGACGACTTGTTTTCTATTTTTTAAGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTT
322 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT--GAATTTTTT
* * * * * *
15187311 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTTATACTTGTATTTTTATTGGC
385 AAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
15187376 ATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
450 ATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
** * * *
15187441 TCCCCCTTTCAGACACTTTACTGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAG
514 TCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* ** * *
15187506 GGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCGATATAAGGGCCAAGTACCAGCACG
579 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACC
* * ** *
15187571 CATCACACATCATGTGCACACACACCCCCGGCCCCCTCGTTCACCAGAACCCCAATGCCGCCGGT
644 CATCACACATCATGTGCGCACAC-CCCCCGGCCCCC-CGATCGTCAGAACCCCAATGCCGTCGGT
* *
15187636 CAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGC
707 CAGGTTCT-C--CGA-------GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * * * ** * *
15187701 CCGAGCCCAATATGTACTGTCGTAACCATCGGTCTGGTCTGATCTTTGACTGGGAATGAACTCCA
762 CTGAGCCCAACATGTGCTGCCACAACC--C--TC-GGTCTGGTC-----C---G---G-A-TCCG
* *
15187766 TATGCTTCGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
809 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** *
15187824 GGGCGCTCAGCC-GACCAGAGGGGCAGGATGATCAAGCCGGGGATCGGTCGAGTCCCCCTCTACG
1 GGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG-GTCCCCCTCTACG
** * *
15187888 TTTTGCCGATCCTGCTGCCGTAACCCTCGATGC-GGTCTGATCTTAGACTGGGAATGAACT-CGT
64 TGCTGCCGATCCTACTGCCGCAACCCTCGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
15187951 ATGCCTAAGCCAACCGACG-AA-A---C-GA--GTGGGCGGGCAATACGTCGGCCAGAGAGACGG
128 ATGCCTAAGCCAACCGATGAAACAGCGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* ** * * *
15188008 GGTGCATAAGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
193 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
15188073 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
258 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
15188138 CGGCAAGAGGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCATAATTTTTTA
323 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT--GAATTTTTT-
* *
15188203 AAAAATTTTTTTGAAAGGAGTTTTGGTCGCAAACTTGGTAGACGTGATCCTTCTATTTTTGTTGG
385 -AAAATTTTTTTGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
15188268 GATGC-CAAAAGAATTCAACTAAAAACTCGAAGTGCACAAGATTTTATGACCATTTGAAAAAAGT
449 CATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
15188332 GTCCCTA-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGA
513 GTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
15188396 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGTGCCAAGTACCAGCAC
578 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCAC
* *
15188461 CCATCGCACATCATGAGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTC
643 CCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTC
** ** * *
15188526 AGGTTCTCCGA-CGATGGTGCCCC-AGCGAAGAAAAATGTTACACCAGCACATGCCAAAGCCTAG
708 AGGTTCTCCGAGCGATGGTGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAA
*
15188589 CATGTGCTGCCACAACCCTCGGTCTAGTCCGATCTTAAACTGGGAATGAATTCTGTATGCTTAGA
772 CATGTGCTGCCACAACCCTCGGTCT-G---G-TC-----C---G---G-A-TCCGTATGCTTAGA
* *
15188654 CTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACAAGCGTGC
819 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * ** * *
15188702 GGGCGCTCAGTCAGCCAAAGGGGCGAGATGGGCAAGCCAAGGATCGGCCAGGTCCCTCACTACGT
1 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCTACGT
* ** **
15188767 GCTACCGATCCTACTATCGCAACCCTTAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
65 GCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
*
15188832 GCCTAAGCCAATCGATGAAACGAGCGGGCAGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
130 GCCTAAGCCAACCGATGAAAC-AGC--GC-GGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
15188897 GGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTTTGCG
191 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* * *
15188962 TGGCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTT
256 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
15189027 CATGGTAGGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGC----G---------
321 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTGAATTTTTTA
* * *
15189079 ----------G-AAGGAGTTTT-GTCCCCAAACTAGGTAGACATGATCATTGTATTTTTGTTGGC
386 AAATTTTTTTGAAAGGAGTTTTGGT-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
15189132 ATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
450 ATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
15189197 TCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAG
514 TCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
** * *
15189262 GGATTGTGAGTTCTCGAGGTTTGATGAGGGATAGG--GCACGACTATAAGGACCAAGTACCAGCA
579 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGC-C-AATATAAGGGCCAAGTACCAGCA
*
15189325 CCCATCACACATCTTGTGCGCACACCCCCTCGGCCCCCCTGATCGTC-GAAACCCCAATGTCGCC
642 CCCATCACACATCATGTGCGCACACCCCC-CGGCCCCCC-GATCGTCAG-AACCCCAA--T-GCC
* *
15189389 AGTCAGGTTCTCTGGTGATGCTCCG-GTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
701 -GTC-GG---TCAGGT--T-CTCCGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * *
15189453 ATGCCTGTGCCTAGCAAGTGCTGCCACAACCCT--G---GGTCCGG-TCCG-AT-CTTAGACTGG
758 ATGCCTGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAGACTGG
* *
15189510 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
823 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * **
15189554 GGGCGCACAGCCAGCTAGAGGGGCGGGATGCGCAAGTCGGGGATTGGCCGGGTCCCCCTCTGTGT
1 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCTACGT
** * * * * * *
15189619 GCTATCAATCCTACTGCCACAACCCTCGGTATAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
65 GCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
15189684 GCCTAAGCCAACCGACGAAA-AGAGC---GGGCGGGCGGGCACTACGCCAGCCAAAGAGATGGGA
130 GCCTAAGCCAACCGATGAAACAGCGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
15189745 TGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
195 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * *
15189810 AATGCCATTTTTATGGCTTGTAAATT-ATACACTGATCCCTTAAGCTTTCACGTGAAGTTTCATG
260 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** *
15189874 GCAAGATGACTCGTTTTCTATTTTTCATGATTTCCGAAAC-CTTTGCGGTTTGAGATTTTTTAAA
325 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTGA-ATTTTTTAAA
*
15189938 ATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
388 ATTTTTTTGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
15190003 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGT-CC
453 CACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
** *
15190067 TCATTTTGGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
518 T-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
15190132 GTGTGAGTTATAGAGGTTTGATAAGGGATAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGT
582 GTGTGAGTTCTCGAGGTTTGATGAGGGATA---GG-----A-A---GCCAATATAAGGGCCAAGT
** * * *
15190197 ACCAGCACCCATTGCACATCACGTGCGCACATTCCCCCGGCCCCCTCGATCG-CCGAAACCCCAA
635 ACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCAG-AACCCCAA
* * * * * * *
15190261 AGCTGTCGATCCGGTTCTCGGCAATGCTCAGGTGATGGAGCTCCGACGAAGAAAAATGTGGCACC
697 TGCCGTCGGTCAGGTTCTC--C---G---A-GCGATGGTGCCCCGACGAAGAAAAATGTGGCACC
* **
15190326 AGCACATGCCTGGGCCCAACATGTGCTGCTGCAACCCTCGGTC---T--GG-TCCG-AT-CTTAG
753 AGCACATGCCTGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAG
*
15190383 A-TGGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
818 ACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
15190432 GGGTGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTATGT
1 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CCGGTCCCCCTCTACGT
* * * *
15190497 GCTGCCAATCCTGCTGCCCCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
65 GCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
15190562 ACCTAAGCCAATCGATGAAACGAGCGGGCGG-GCAGGCAGGCGGGCACTATGCCGACCAGAGAGA
130 GCCTAAGCCAACCGATGAAAC-AGC--GCGGAG--GGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
15190626 CGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTAC
190 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* **
15190691 GTTCCAATGCCATTTTT-TTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
255 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
15190755 TCACGGCAAGACGACCCGTTTTCCATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTT
320 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TT-GAATTTT
* * ** * * *
15190820 TT-AAACTTTTTTCAGAAGGAGTTTTCATCCCAAACTTGGCAGACATAATCCTTGTATTTTTGTT
383 TTAAAATTTTTTTGA-AAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
15190884 GGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTCAAAAAA
447 GGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * * *
15190949 GTGTCCCCATTTCAAACACTTTTATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
511 GTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * **
15191014 AAGGGGGTGTGAGTTGTCAAGGTTTGATGTGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
576 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGC
* * * *
15191079 ACCCATCTCACATCATGTGCGCACACCCCCCTCGGCCCCCCCAATCGTCGGGACCCCAATGCCGT
641 ACCCATCACACATCATGTGCGCACA-CCCCC-CGG-CCCCCCGATCGTCAGAACCCCAATGCCGT
* * * *
15191144 CGGTCAGGTTCTCCGGTGATGCTCCGGCGACGGTGCCTCGATGAAGAAAAATGTGGCAGCAGCAC
703 CGGTCAGGTTCTCC---GA-------GCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
* * * *
15191209 GTGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTGGT-C---T--G-AT-CTTAGACTGG
758 ATGCCTGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAGACTGG
**
15191266 GAATGAACTCCGTATGCCTAAGTCAACGTACGAAACGAGCGTGC
823 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** **
15191310 GGGCGCTCAGTC-GACCAGAGGGACAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTGTG
1 GGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCTACG
*
15191374 TGCTGCCGATCCTACTGCCACAA--C-CGA--T-G---G---TT---C---G---G---TCCG-A
64 TGCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* ** * * *
15191414 T--CTTAG---A-C--TGGGA-A----TGA--ACGGGCGGGCACTACACCGGCCAGAGAGACGGG
129 TGCCTAAGCCAACCGATGAAACAGCGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
** * *
15191464 ATGCGCAAGCCGTGGATCGATAGGCCGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGC
194 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
15191529 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
259 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
15191594 GGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTTA
324 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT---GAATTTTTTA
* * * *
15191659 AAA-TTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGC
386 AAATTTTTTTGA-AAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
15191723 GTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGGT
450 ATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GT
* *
15191788 GTCCCCATTTTCTGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTT
513 GTCCCTA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTT
* **
15191853 AATAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
576 AA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAG
* * *
15191918 CACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGATCCCAATGCCGCCG
640 CACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCG
*
15191982 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGGACCAGCACAT
705 GTCAGGTTCT-C--CGA------G-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
* * * * * *
15192047 -CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC---T--AG-TCCG-AT-CTTAAACTGGGA
760 GCCTGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAGACTGGGA
* *
15192103 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTAC
825 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
15192145 GGGCTCTCAGCCGGCCAGAGGGGCAGGATGCGCAATCCGGGGATCGGCCGGGTCCCCCTCT-TGT
1 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTCTACGT
* * * * * * *
15192209 GGTGCCGATCCTACTACTGCAACCCTCGGTTTGGTTTGATCTTAGACTAGGAATGAACTCCGTAT
65 GCTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15192274 GCCTAAGCCAACCGACGAAAC-GAGCGGACGGGCGGGCGGGTGAGCACTACGGCGGCCAGAGAAA
130 GCCTAAGCCAACCGATGAAACAGCGCGGA-GGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGA
* * * *
15192338 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGT
190 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
15192403 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
255 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
15192468 TCATGGCAAGGCCACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCCGAATTTT
320 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT--GAATTTT
* * * * *
15192533 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTTTT
383 TTAAAATTTTTTTGAAAGGAGTTTTGGTCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
15192598 GGCATGCACCAAAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAA
447 GGCATGCA-C-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
15192663 AGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTC
510 AGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * **
15192728 TAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
575 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAG
* * * * *
15192793 CACCCATCGCACATCATGTGCGATCACCCCCCCCGGCCCCCCCGATCGCCGGAACCCCAAAGCCG
640 CACCCATCACACATCATGTGCG--CACACCCCCCGG-CCCCCCGATCGTCAGAACCCCAATGCCG
* * * * *
15192858 CCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGACGAAAAAAAATTTGACACCAACA
702 TCGGTCAGGTTCT-C--CG--A----G-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
* * *
15192923 CATG-CTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC---T--GG-TCCG-AT-CTTAGACT
757 CATGCCT-GAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAGACT
* * * *
15192979 GGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGC
821 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
15193025 GGGCG
1 GGGCG
15193030 GGCGGGCACT
Statistics
Matches: 4463, Mismatches: 525, Indels: 456
0.82 0.10 0.08
Matches are distributed among these distances:
832 1 0.00
833 1 0.00
834 121 0.03
835 234 0.05
836 175 0.04
837 33 0.01
838 51 0.01
839 12 0.00
840 83 0.02
842 5 0.00
843 70 0.02
844 117 0.03
845 3 0.00
846 2 0.00
847 2 0.00
848 3 0.00
849 1 0.00
850 2 0.00
851 4 0.00
852 173 0.04
853 4 0.00
854 7 0.00
855 1 0.00
857 2 0.00
858 4 0.00
859 2 0.00
860 2 0.00
861 4 0.00
862 2 0.00
863 51 0.01
864 65 0.01
865 135 0.03
866 14 0.00
867 155 0.03
868 60 0.01
869 5 0.00
870 6 0.00
871 10 0.00
872 5 0.00
873 7 0.00
874 9 0.00
875 93 0.02
876 61 0.01
877 126 0.03
878 992 0.22
879 214 0.05
880 104 0.02
881 4 0.00
882 3 0.00
884 1 0.00
885 13 0.00
886 182 0.04
887 73 0.02
888 134 0.03
889 36 0.01
890 12 0.00
891 527 0.12
892 59 0.01
893 62 0.01
896 1 0.00
898 2 0.00
899 23 0.01
900 95 0.02
901 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (866 bp):
GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGTCCCCCTCTACGTG
CTGCCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGATGAAACAGCGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTGAATTTTTTAAAATT
TTTTTGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTC
CGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAACATGTGCTG
CCACAACCCTCGGTCTGGTCCGGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGC
Found at i:15190180 original size:12 final size:12
Alignment explanation
Indices: 15190163--15190194 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15190153 TAAGGGATAG
15190163 GGGGCCAATATA
1 GGGGCCAATATA
15190175 GGGGCCAATATA
1 GGGGCCAATATA
*
15190187 AGGGCCAA
1 GGGGCCAA
15190195 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:15193724 original size:26 final size:26
Alignment explanation
Indices: 15193686--15193738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15193676 CTGATCCGAT
* *
15193686 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15193712 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15193738 C
1 C
15193739 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15194609 original size:26 final size:26
Alignment explanation
Indices: 15194570--15194622 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15194560 CTGGTCTGAT
* *
15194570 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15194596 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15194622 C
1 C
15194623 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15195504 original size:26 final size:26
Alignment explanation
Indices: 15195461--15195513 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15195451 CCGGTCTGAT
* *
15195461 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
*
15195487 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
15195513 C
1 C
15195514 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAACGAACTCCGTATG
Found at i:15195673 original size:891 final size:884
Alignment explanation
Indices: 15192942--15197609 Score: 5805
Period size: 891 Copynumber: 5.3 Consensus size: 884
15192932 GCCCAGCATG
* * *
15192942 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
15193007 CCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCA
66 CCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
15193072 TGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCGATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
15193137 TATGGTTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
15193202 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-TGAGATTTTTTAAAATTTTTTTGG
261 CTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTTGG
*
15193266 AAGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AA
* * * * * *
15193331 TTCAACTAAAATCTCGAAATGTAGAAGATTTTATGACCATTTGAAAAAAGGGTCCCCATTTCAGA
389 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
15193396 CACTCTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGACTTC
454 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
15193461 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
519 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
15193526 GTGCGCTCACCCCCCCGGCCCCCCCGATCGCCGGAACCCCTAA-GCCATCGGCCAGGTTCTCCGA
584 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAA-CCC-AATGCCATCGGTCAGGTTCTCC--
* * * * *
15193590 CGATACTCCGACGATGGTGCCCCGACGAAGAAAAATTTGACACCAACACATGCTCGAGCCCAGCA
645 CG------CGA-G--GGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
15193655 TGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
701 TGTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACT
* * * *
15193720 AGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGTGTACGGGTGCTCAGCCGGCCAGA
765 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGA
* * * * *
15193785 GGGGCGGGATGCGTAAGCCGGGGATCGATC-GAGTCCCCCTATGCATGCTGTCGATCC
830 GGGGCGGGATGCGCAAGCC-GGGATCG-GCAG-GTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
15193842 TGCTGCTGTAACTCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAGGCCTAAACCA
1 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ***
15193906 ACTAACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTTAGCCAGAGAGACGGGATGCGCA
65 ACCAACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
15193971 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
15194036 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
15194101 CGACTCATTTTCTATTTTT--C-A------AAACTTTTTACGGTTCAGGATTTTTTTAAATTTTT
256 CGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
** *
15194157 TCAGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
321 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AA
* *
15194222 AAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
385 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
15194287 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
450 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
15194352 GTTCTCGAGGTTTCATAAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGTACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** *
15194417 TCATGTGCGCACA-CCCCCCGCGCCCCCACAATCGCCGGAAGATCAATGCCATCGATCAGGTTCT
580 TCATGTGCGCACACCCCCCCG-GCCCCCCCGATCGCCGGAA-CCCAATGCCATCGGTCAGGTTCT
* * * * * * * *
15194481 CCGGTGATGGTACCCCGGCGAAGAAAAATGCGGCACCAACAAATGCCCGAGCCCTGCATGTGCTG
643 CCCGCGAGGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
15194546 CTGCAACCCTCGGTCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGGGAATG
708 CTGTAACCCTCAGTCCGATCCGATCTTAGACTG-GAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
15194611 AACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGATGCTCAGCCAGCCAGAGGGACGG
772 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGG
* * * **
15194676 AATGCGCAAGTCAGGGATCGACCAGGTCCCCCTCTGCGTGCCACCGATCC
837 GATGCGCAAG-CCGGGATCG-GCAGGTCCCCCTCTGCGTGCTGCCGATCC
* *
15194726 TGCTACC-CTAACCCTCAGTCTGGACTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGC-AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15194790 ACCGACGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCAGCCAGATAAACGTGATGCGCA
65 ACCAACGAAACGAGCGGGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
15194855 AGCCGTGGAACGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGGATTCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
15194920 ATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
15194984 ACGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGCTT-GGGATTTTTTAAAATTT
255 ACGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCAGGATTTTTTAAAATTT
* * *
15195048 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG-GATCCTTGTATTTTTGTTCGCATGCACA
319 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
15195112 AAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
384 AAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
15195177 TTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTAT
448 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
15195242 GAGCTCTCGAGGTTTGGTGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
513 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * * *
15195307 CATCATGTGCACACACCCCCCCGGCCCCCTCGATCG-TGAAACGCCAATACCACCGATCAAGTTC
578 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAAC-CCAATGCCATCGGTCAGGTTC
* * * *
15195371 TCCCGCGAGGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCTCATGCCCGAGCCCAGTATGTGCT
642 TCCCGCGAGGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
15195436 GCCGTAACCCTCATTCCGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAAC
707 GCTGTAACCCTCAGTCCGATCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAAT
* *
15195501 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGTGCTCAGTCGGCCAAAGGGGCG
771 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCG
* *
15195566 GGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGCGTGCTACCGATCT
836 GGATGCGCAAGCC-GGGATCGG-CAGGTCCCCCTCTGCGTGCTGCCGATCC
* *
15195617 TGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15195682 CCAATGAAACGAGCGAGTAGGCGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAC
66 CCAACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
15195747 GGCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCAGATCTTCATATTTCTACATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15195812 TTTTCATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
15195877 GACT-TGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTT
257 GACTCT-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * * ** *
15195941 TTGGAAGGATTTTTGACCCCAAACTTGGTCGACGTGATCCTTACATTTTTTTTGGCTTGCACAAA
321 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
15196006 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTAC
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15196071 AGACACTTTAAAGGCTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
451 AGACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
15196136 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGGA
513 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15196201 CATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTT
578 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCC-AATGCCATCGGTCAGG--T
* * * * * *
15196265 TCTGATGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCAGCAGCACATGCTCGAGCC
640 TC------T-C-CC-GCGAGGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
*
15196330 CAG-ATGTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTT
696 CAGCATGTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTT
* * * * * *
15196394 AGATTGGGAACGAACTCCATATGCCTAAGTCATCCCATGAAACGAGCGTGCGGGTGCTCAGTCGG
760 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGG
*
15196459 CCAGA---G-GGGAT-CG---G-C----T--G--GGTCTCCCTCTGCGTGCTGCCGATCC
825 CCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCAGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
15196502 TGCTACCGCAACCC-CCGATCTGTTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** **
15196566 ATCGACGAAACGAGCAGACGGGCGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTT
65 ACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
15196631 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
15196696 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
15196761 T-TGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATCTTTTAAAATTTTTTTG
260 TCT-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTG
* * * * * * *
15196825 GAAAGATTTTTAGCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCAAAAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAA
*
15196890 ATTCAGC----AA---GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAG
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
15196948 ACACTTTAAAGGCTACTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 ACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
15197013 GTTCTCGAGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCATGTACCCGCACCCATCACACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
15197078 TCATGTGCGCACACCCCCGCCCCGGCCCCCTCGATCGCCGGAACCCAATGCCGCCGGTCTA-GTT
580 TCATGTGCGCACA--CCC-CCCCGGCCCCCCCGATCGCCGGAACCCAATGCCATCGGTC-AGGTT
* *
15197142 CTCCGGCGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
641 CTCC--C---G---CGA-G--GGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
*
15197207 CCAGCATGTGCTACTGTAA-CC-C--T-C-A---G----T---C-----TG-A-TCCG-AT-CTT
695 CCAGCATGTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTT
* * * * * *
15197247 AGACTGGGAATGAACTCTGTATGCCTAAGTAAACCCACGAAACGAGTGTGCGGGCGCTCAATCGG
760 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGG
* * * *
15197312 CCAGAGGGGTGGGATGCGCAAGCCGGGATCGGTAGGGTCCCCCTCTACGTGCTGTCGATCC
825 CCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCA-GGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15197373 TACTACAGCAACCCTCGGT-TCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
15197437 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACAATGTCGACCAGAGAGATGGGATGCGAAAGTC
65 ACCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
15197502 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
15197567 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
15197610 GGATAGGGGG
Statistics
Matches: 3314, Mismatches: 355, Indels: 227
0.85 0.09 0.06
Matches are distributed among these distances:
853 63 0.02
854 2 0.00
855 3 0.00
856 2 0.00
857 7 0.00
858 2 0.00
861 1 0.00
862 1 0.00
863 1 0.00
866 2 0.00
868 2 0.00
869 1 0.00
870 4 0.00
871 231 0.07
872 3 0.00
873 1 0.00
874 1 0.00
875 187 0.06
876 3 0.00
877 1 0.00
878 61 0.02
879 38 0.01
880 9 0.00
881 273 0.08
882 12 0.00
883 4 0.00
884 434 0.13
885 94 0.03
886 1 0.00
887 3 0.00
888 1 0.00
890 6 0.00
891 614 0.19
892 258 0.08
893 90 0.03
894 146 0.04
895 320 0.10
896 9 0.00
899 3 0.00
900 69 0.02
901 2 0.00
902 2 0.00
903 2 0.00
904 299 0.09
905 46 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (884 bp):
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCAATGCCATCGGTCAGGTTCTCCCGCGAG
GGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACC
CTCAGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAA
GCCGGGATCGGCAGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:15196401 original size:26 final size:26
Alignment explanation
Indices: 15196365--15196417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15196355 CCGATCCGAT
*
15196365 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
15196391 CTTAGATTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
15196417 C
1 C
15196418 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:15197850 original size:26 final size:26
Alignment explanation
Indices: 15197821--15197871 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197811 TGTCCGATCT
15197821 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
15197847 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15197872 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:15198033 original size:26 final size:26
Alignment explanation
Indices: 15198004--15198056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197994 CCAGTCTGAT
*
15198004 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15198030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15198056 C
1 C
15198057 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15198939 original size:26 final size:26
Alignment explanation
Indices: 15198902--15198954 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15198892 CCGGTCCGAT
*
15198902 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACAGGGAATGAACTCCTTATG
15198928 CTTAGACAGGGAATGAACTCCTTATG
1 CTTAGACAGGGAATGAACTCCTTATG
15198954 C
1 C
15198955 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCTTATG
Found at i:15200370 original size:731 final size:738
Alignment explanation
Indices: 15198936--15200389 Score: 2240
Period size: 731 Copynumber: 2.0 Consensus size: 738
15198926 TGCTTAGACA
* *
15198936 GGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAAA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAA
* * * **
15199001 GGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTTTACATGCTGCCGATCCTGCTGGTG
66 GGGGCAGGATGCGCAAGCCGAGGATCGATCGAGTCCCCCTCTACATGCTGCCGATCCTGCTGCCG
* * *
15199066 TAACCCCCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGACGAA
131 CAACCCCCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCGACGAA
* * * * * * *
15199131 ATGAGTGGGCAGGCGGGTGGGCAGGCACTACGCCGGTCGGAGACACGGGATGCGCAAGCCGTGGA
196 ACGAG-GCGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAA
*
15199196 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATCCCAATGCCATTTTTATG
** * *
15199261 GCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCACT
* * *
15199326 TTTTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATGATTTCGAAAGGA
390 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATGATTTCGAAAGGA
* *
15199391 GTTTTGGCCCCAAACTTGGTAGACATTATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACATGATACTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAG
* *
15199456 CTAAAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTT
*
15199521 TAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
585 TAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAG
* * * *
15199586 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCG
650 GTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCACGAGCA
15199651 CACACCCCGGTCCAATCTTGGACT
715 CACACCCCGGTCCAATCTTGGACT
*
15199675 GGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAA
* * *
15199739 GGGGCAGGATTCGCAAGCCGGGGATC-AGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC
66 GGGGCAGGATGCGCAAGCCGAGGATCGA-TCGAGTCCCCCTCTACATGCTGCCGATCCTGCTGCC
* ** * *
15199803 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCGACGA
130 GCAACCCCCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCGACGA
* * *
15199868 AACGA-GCG-A-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGAGCAAGCCGTGAA
195 AACGAGGCGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAA
* *
15199930 TCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATCCCAATGCCATTTTTATG
* *
15199995 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGCT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCACT
**
15200060 TTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGA
390 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATGATTTCGAAAGGA
* * * *
15200123 TTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTT-TTGGCATGCACAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACATGATACTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAG
* * *
15200187 CTAAAAGCTCGAAGTGTACACGATTTTGTGACCATTTGAATAAAGGGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTT
* ** **
15200252 TAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAG
585 TAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAG
* *
15200317 GTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCACGAGCA
650 GTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCACGAGCA
15200382 CACACCCC
715 CACACCCC
15200390 CTGACCACCC
Statistics
Matches: 648, Mismatches: 66, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
731 208 0.32
732 41 0.06
733 34 0.05
734 185 0.29
735 1 0.00
736 2 0.00
737 1 0.00
738 159 0.25
739 17 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (738 bp):
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAA
GGGGCAGGATGCGCAAGCCGAGGATCGATCGAGTCCCCCTCTACATGCTGCCGATCCTGCTGCCG
CAACCCCCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACATAAGCCAACCGACGAA
ACGAGGCGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATCCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCACTT
TCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATGATTTCGAAAGGAG
TTTTGGCCCCAAACTTGGTAGACATGATACTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTT
AATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGG
TTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCACGAGCAC
ACACCCCGGTCCAATCTTGGACT
Found at i:15200548 original size:26 final size:26
Alignment explanation
Indices: 15200519--15200571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15200509 CGCATCCGAT
15200519 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15200545 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15200571 C
1 C
15200572 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15202015 original size:859 final size:865
Alignment explanation
Indices: 15199734--15202977 Score: 4199
Period size: 897 Copynumber: 3.7 Consensus size: 865
15199724 GCTCAGCCGG
* * * *
15199734 CCAGAGGGGCAGGATTCGCAAGCCGGGGATCAGTCGAGTCCCCCTCTACGTGCTGCCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGATCCTGC
* ** * *
15199799 TGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCG
66 TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
15199864 ACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGAGCAAGCCGTGA
131 ACGAAATGA--TAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
15199929 ATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTAT
194 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTAT
*
15199994 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGC
259 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGC
15200059 TTTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAGG
324 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
15200122 ATTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTT-TTGGCATGCACAAAAAAATTCA
389 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCA
* * * *
15200186 GCTAAAAGCTCGAAGTGTACACGATTTTGTGACCATTTGAATAAAGGGTCCCCATTTCAGACACT
453 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * *
15200251 TTAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGA
518 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
15200316 GGTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCACGAGC
583 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCACACATCACGTGC
* * *
15200381 ACACACCCC-CTGACCACCCCGATCGTCGGAACCCCAATGTCGCCGGTC-AG--GTT--C--T-C
648 GCACACCCCTCTG-CCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTTCGCGATGC
* * *
15200437 -T-GGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCA-TGCTG
712 TTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATTGCTG
15200499 CCGCAACCCTCGCATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
777 CCGCAACCCTCG----CGA--TT--AC--GGAAT--ACT-CGTATGCTTAGACTGGGAATGAACT
15200564 CTGTATGCCTAAGTCAACCC-CG-AACGAGCGTACGGTTGCTCAGCC
829 CTGTATGCCTAAGTCAACCCACGAAACGA-CG-AC----G-T--G-C
* ** ** *
15200609 ACCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGCTTCCCCCTCTGTGTGCTGCC-A-CCTA
1 -CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGATCCTG
* * *
15200672 CTGCCGCAACCCTC-GTCT--T--GATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCGACT
65 CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
15200731 GACGAAA-CA-AACGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
130 GACGAAATGATAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
15200794 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
195 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATG
* * *
15200859 GCCTG-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
260 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCT
* * **
15200923 TTCTA-TTTTCATGATTTTTGAAACTTTTTAAGGTTTCGA-ATTTTTTAAAATTTCTTT-GGAAG
325 TTCTATTTTTCACGATTTTCGAAACTTTTTGCGG-TTCGAGATTTTTTAAAATTT-TTTCGGAAG
* * ** *
15200985 GATTTTTGGCCCCAAACTCGGTAGACTTGATCCTTGTATTTTTGTTGGCACACACAGCAAAATTC
388 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-AAAAATTC
* * * *
15201050 ATCTAAAAACTCGAAGTGTACAGGATTTTGTGACCGTTTGGAAAAAGTGTCCCCATTTCAGACAC
452 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15201115 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTAG
517 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * *
15201180 AGGTTTGATGGGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGAACTCGTCACACATCATGTG
582 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCACACATCACGTG
** *
15201245 CGCACACCCCTCTAGCCCCCCCGATCGTCGGAACCCCAACATCACCGGTCAAGTTCTTCAGCGAT
647 CGCACACCCCTCT-GCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTTC-GCGAT
* ** * * *
15201310 GCTTCGGCGATGGTACCCTAACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATCTG
710 GCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCAT-TG
* * *
15201375 CTGCCTCAACCCTCG-G-TT-C-G-AT-CT-G-AT-CTTAGACTGAGAATGAACTCTGTATTCCT
774 CTGCCGCAACCCTCGCGATTACGGAATACTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
*
15201431 AAGTCAACCCACGAAATGA-G-CGTG-
839 AAGTCAACCCACGAAACGACGACGTGC
* * * *
15201455 CCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCTG-GTCCCCCTCTGCGTGTTGCCGATCCTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GAGTCCCCCTCTACGTGCTGCCGATCCTG
*
15201519 CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
65 CTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
15201584 GACGAAATGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTG
130 GACGAAATGA-T-AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
15201649 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTA
193 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTA
15201714 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
258 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
15201779 CTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
323 CTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
15201844 GAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACAATTC
388 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTC
*
15201909 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
452 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
15201974 TTTAATTGCTACTAGCAGCAAACCTGTAAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
517 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
15202039 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCACGTG
582 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCACACATCACGTG
* * * * * * * * * *
15202104 TGGACAGCCCTTCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGA
647 CGCACA-CCCCT-CTGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTTCG-CGA
* *
15202169 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG-CTCGAGCTCAGCATG
709 TGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCT-GAGCCCAGCAT-
*
15202233 TGCTGTCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
772 TGCTGCCGCAAC-C-C--TC-G---CGA--TT--AC--GGAAT--ACT-CGTATGCTTAGACTGG
* *
15202298 GAATGAACTCCGTATGCCTACGTCAACCCACGAAACGAGCGAACGGGTGCTCATC
820 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA-CG-AC--GTG-----C
** * *
15202353 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCC
1 C--C-AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGATCC
* * *
15202418 TGCTACTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
63 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15202483 CCGACGAAATGAT--CGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCACAAGCCATG
128 CCGACGAAATGATAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
** * *
15202546 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTT-TGTGTGCCAAAGCCATTTTT
193 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATCCCAATGCCATTTTT
* *
15202610 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACTACTC
257 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
15202675 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAC
322 GCTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
15202740 GTATTTTTGGCCCAAAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATT
387 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATT
*
15202805 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
451 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
15202870 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
516 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
15202935 GAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTAC
581 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
15202978 TAGTGTCACG
Statistics
Matches: 2081, Mismatches: 198, Indels: 157
0.85 0.08 0.06
Matches are distributed among these distances:
845 49 0.02
846 2 0.00
847 16 0.01
848 5 0.00
850 2 0.00
851 1 0.00
852 22 0.01
853 23 0.01
854 1 0.00
855 1 0.00
857 154 0.07
858 76 0.04
859 286 0.14
860 105 0.05
861 4 0.00
862 13 0.01
863 86 0.04
864 171 0.08
865 201 0.10
866 33 0.02
867 4 0.00
868 22 0.01
869 25 0.01
871 3 0.00
872 3 0.00
873 3 0.00
874 19 0.01
875 3 0.00
876 49 0.02
877 47 0.02
878 1 0.00
879 18 0.01
882 2 0.00
884 1 0.00
885 2 0.00
886 43 0.02
888 1 0.00
890 1 0.00
892 3 0.00
896 1 0.00
897 448 0.22
898 4 0.00
900 3 0.00
901 124 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTGCCGATCCTGC
TACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAATGATAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTT
TCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAT
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCACACATCACGTGCGCA
CACCCCTCTGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTTCGCGATGCTTCG
GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATTGCTGCCGC
AACCCTCGCGATTACGGAATACTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACGACGACGTGC
Found at i:15202291 original size:26 final size:26
Alignment explanation
Indices: 15202262--15202314 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15202252 CTGATCCGAT
15202262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15202288 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15202314 C
1 C
15202315 CTACGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15208342 original size:26 final size:26
Alignment explanation
Indices: 15208306--15208358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15208296 CCAATCCTAT
*
15208306 CTTAGACTGGGAATTAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15208332 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15208358 C
1 C
15208359 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15209243 original size:26 final size:26
Alignment explanation
Indices: 15209207--15209259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15209197 CCGGTCTGAT
*
15209207 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15209233 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15209259 C
1 C
15209260 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15210524 original size:26 final size:26
Alignment explanation
Indices: 15210487--15210539 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15210477 GTTGACTTAG
15210487 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15210513 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15210539 G
1 G
15210540 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15211971 original size:888 final size:888
Alignment explanation
Indices: 15209920--15213060 Score: 4727
Period size: 894 Copynumber: 3.5 Consensus size: 888
15209910 ATGCCCGAGC
* * *
15209920 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGCCACAAAATATTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15209985 TTGGAGTTTTTAGCTGAATGT-TTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG
66 TTCGAGTTTTTAGCTGAAT-TATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
15210049 ATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAAAT
130 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
15210114 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
195 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
15210179 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACC
260 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
15210244 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCT
325 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCT
* * *
15210308 CGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGG
390 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGG
* * * * * * *
15210373 TTGCGGCAGCAAGATTGACAGCACACAGAGGGGGACCCGGTCAATCCCCGGCTTATGCATCCCAC
455 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCAT-CCGC
*
15210438 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
519 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
15210503 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
584 CCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * ** ***
15210568 ACATGTTGGGCTCAGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCATCGTTAGAGCA
648 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGGAGCA
* * *
15210633 TCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGAGGGGGCCGGGGGGGTGTGCGC
713 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGC
*
15210698 ACATGATGTGTGATGGGTGA-TGGTACTTGGCCCTTATATTGGCCCCCTAAT-CCTCATCAAACC
776 ACATGATGTGCGATGGGT-ACTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAA-C
* *
15210761 CCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
838 CTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15210812 CCAGTAGCCGTTAAAGTATCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
15210876 TTCAAGTTTTTAGCTAAATTTTTTTGTGCCTGCCAAGAAAAATACAAGGATCAAGTCTACCAAGT
66 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
15210941 TTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAATATCCCAAACCATAAAAGGTTTCAAAAATC
131 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
15211006 GTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTA
196 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15211071 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACGCACCT
261 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** *
15211136 ACAACCCTATCGATCCGTGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGT-GCCCG-CCGCTC
326 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTC
* * *
15211199 GTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAG-CATAAGATTGGACCAGACCAAGGG
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCGGATCAGACCAAGGG
* * * * *
15211263 TTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCGCC
455 TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCGCC
* * * * *
15211328 CCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGAATATGGAGTTCATTC
520 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
15211393 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCCAGCA
585 CCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* *
15211458 CATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGACGGAGCAT
649 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGGAGCAT
*
15211523 CGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
714 CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
15211588 TGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAG
779 TGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAG
*
15211653 AACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTG
843 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15211699 CCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
15211764 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGT
66 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
**
15211829 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATC
131 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
15211894 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTATA
196 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15211959 TGAATTTACAAGCCATAAAAATGGCTTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
261 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
15212024 ACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGAAGTGCCCGCCCGCCCG
326 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCG
* * * * * **
15212089 CTCGTTTCATCGGTTCGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAATCAGACTGAG
388 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAG
* * *
15212154 GGTTGCAGAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCTC
453 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATC-C
* * * *
15212219 GCCCCTCTGGCCGGATGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCA
517 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
15212284 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGTGG-TGCGGC
582 TTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG-GGTTGCGGC
* * * *
15212348 AGCACATGCTGGACTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGA
645 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGGA
* * *
15212413 GCGTCGTCGGAGAACCTGATCGACGGCATCGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGC
710 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC
* *
15212478 -CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACC
774 GCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15212542 TCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTG
839 T-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15212593 CCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
** *
15212658 TTCGAGAATTTAGCTGAATTATTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGT
66 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * ** *
15212723 TTGGGGCCAAAACTCCTTCTGTAAAAATTTTAAAAAATCCCGAGCCGGAAAAAGTTTTGAAAGTC
131 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
15212788 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTA
196 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15212853 TGAATTTACAAGCCATAAAAATGTCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
261 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * *
15212918 ACGACCCTATCGATCCACGTTTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
326 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCG
* * * *
15212983 CTCGTTTCGTCGATTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGACCGAG
388 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAG
15213048 GGTTGCGGCAGCA
453 GGTTGCGGCAGCA
15213061 CAAGCTGGGC
Statistics
Matches: 2038, Mismatches: 194, Indels: 32
0.90 0.09 0.01
Matches are distributed among these distances:
886 5 0.00
887 141 0.07
888 324 0.16
889 219 0.11
890 114 0.06
891 320 0.16
892 33 0.02
893 114 0.06
894 747 0.37
895 21 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGT
TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCG
TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
Found at i:15212310 original size:26 final size:26
Alignment explanation
Indices: 15212270--15212322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15212260 GTTGACTTAG
*
15212270 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
15212296 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
15212322 G
1 G
15212323 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:15213665 original size:716 final size:710
Alignment explanation
Indices: 15212296--15213757 Score: 2241
Period size: 716 Copynumber: 2.0 Consensus size: 710
15212286 CCCAGTCTAA
* *
15212296 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGTGGTGCGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGGTGCGGCAGCACAAGCTGGA
* * ** *
15212361 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTCGTCGGAGA
66 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAAAGCATCGTCGGAGA
* * *
15212426 ACCTGATCGACGGCATCGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCCACATGATGTGCG
131 ACCTGACCGACGGCATCGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTGCCACATGATGTGCG
**
15212491 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACAC
* * *
15212556 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGG
261 CACCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15212621 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGAATTTAGCTGAATTATTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGAATTTAGCTGAATTATTTTGTG
** * * * *
15212686 CGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGTAAAAAT
391 CACGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
15212751 TTTAAAAAATCCCGAGCCGGAAAAAGTTTTGAAAGTCGTGAAAAATAAAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGGAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
* *
15212816 CATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGTCATT
521 CATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAGAAAAATGGCATT
* * ** *
15212881 GCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGTTTTGCGCA
586 GCCAT-CAGAAATACGAAGATATGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTACGCA
15212946 TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-C-CCGCTCGTTTCGTCGATTGGCTTAG
650 TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCGCTCGTTTCGTCGATTGGCTTAG
* *
15213005 GCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGACCGAG-GGTTGCGGCAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGG-TGCGGCAGCACAAGCTGG
* *
15213069 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAAAGCATCG-CTGGA
65 ACTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAAAGCATCGTC-GGA
* * * * *
15213133 GAACCTGGCCGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGAGGGGGGTGTGCGCACATT
129 GAACCTGACCGACGGCATCGGGGTTCCGACGATCGGGGGGG-C---AGGGGGGTGTGC-CACATG
* * *
15213198 ATTTGTGATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
189 ATGTGCGATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAA
* *
15213263 CTCACACCACCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
254 CTCACACCACCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *** *
15213328 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGATTTTTTAGCTGAATTG
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGAATTTAGCTGAATTA
15213393 TTTTGTGCACGCCAAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
384 TTTTGTGCACGCC--AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
*
15213458 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAG
447 CGAAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAG
* * *
15213523 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAA
512 TCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAGAAA
15213588 AATGGCATTGGCACAT-AGAAATACGAAGATATGCCTAAACCCACCTACGACCCTATCGATCCAC
577 AATGGCATT-GC-CATCAGAAATACGAAGATATGCCTAAACCCACCTACGACCCTATCGATCCAC
* * * *
15213652 GGCTTATGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGT
640 GGCTTACGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-CCG-CCGCTCGTTTCGTCGAT
15213717 TGGCTTAG
703 TGGCTTAG
15213725 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
15213758 CTGGCACAAG
Statistics
Matches: 679, Mismatches: 59, Indels: 19
0.90 0.08 0.03
Matches are distributed among these distances:
708 3 0.00
709 147 0.22
710 1 0.00
713 11 0.02
714 196 0.29
716 259 0.38
717 2 0.00
718 4 0.01
720 56 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGGTGCGGCAGCACAAGCTGGA
CTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAAAGCATCGTCGGAGA
ACCTGACCGACGGCATCGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTGCCACATGATGTGCG
ATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACAC
CACCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGAATTTAGCTGAATTATTTTGTG
CACGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGGAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAGAAAAATGGCATT
GCCATCAGAAATACGAAGATATGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTACGCAT
CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCGCTCGTTTCGTCGATTGGCTTAG
Found at i:15215679 original size:905 final size:898
Alignment explanation
Indices: 15213884--15218198 Score: 5865
Period size: 905 Copynumber: 4.8 Consensus size: 898
15213874 GTTGACTTAG
*
15213884 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
15213949 CTCGGGCATGTGTTGGAGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
15214014 ACCTGACCGATGGCATTGGGGTTCCAGCGATCGGAAGGG-T-CGAGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCAACGATCGG-GGGGTTGCGGGGGGTGTGCGCACATGATGT
* ** * * *
15214077 GCGATGGGTTCTGGTACTTCACCATTATATTGGCCCCCTATCCCTCTTCAAACCTCCAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCA
* *
15214142 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15214207 TGGGGAAAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTCT-GCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGTTGAAGTTTTT
* * *
15214270 TATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCGAAAACTCCTTCCGAAG
389 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*** * * *
15214335 AAATTTTAAAAAATGTTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
454 AAATTTTAAAAAATCCCGAACCAT-AAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGT
** * *
15214399 CTTAACATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
*
15214464 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15214529 GTGCATCCCGTCTCTCTGACCGGCGTCGTGCCCACCCGCTCGCCCGCCCGCTCGTTTCGTGGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCC-C-CGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
15214594 GGCTTAGGCATACTGAGCTCATTCCTAGTCTAAGATTGGATCGGACTGAGGATTGTGCCAGCAGG
708 GGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGGATTGTGCCAGCAGG
* * **
15214659 ATCGACAGCAAGCAGAGGGGGATCCGATCGATCGTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
773 ATCGACAGCAAGTAGAGGGGGACCCG-TCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
*
15214724 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATTCCTAGTCTAA
837 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
*
15214786 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * *
15214850 GCTCGGGCATCTGTTGGTGCCGTAATTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
15214915 AACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGTGGTTGGGGGGCGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCAACGATCGGGG-GGTTGCGGGG-GGTGTGCGCACATGAT
* * * *
15214980 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATGAAACCTCGAGAGCT
193 GTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCT
15215045 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTTAAAGTGTCTG
258 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTG
*
15215109 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAAGTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTT
* * * * *
15215174 TTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAACTCCTTCCGA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** *
15215239 AAAGATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATTGTGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCG
15215304 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
**
15215369 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15215434 TGCGCATCCCGTCTTTCTGGCTGACGTAGTGCCTCCCGCATGCCCGTCCGCTCGTTTCATCGGTT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CCC-C--GCCCGCCCGCTCGTTTCGTCGGTT
* * * * * ** *
15215499 GGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGTAGG
708 GGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGGATTGTGCCAGCAGG
** * * * * * *
15215564 ATCGATGGCACGTAGAGTGGGACCCAGTCGATCCCCGACTTGCGCATGCCGCCCCTCTGGCCAGC
773 ATCGACAGCAAGTAGAGGGGGACCC-GTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
* * * *
15215629 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
837 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
* * *
15215691 GCATACGGAGTTCATTCCCAGTCTAAGATCGTATCGGACCGAGGGTTACGACACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
15215756 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAAAGCATCG-CTGGAG
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * * ** * *
15215820 AACCTGACCAACAGCATCGGGGTTCCGGCGATCAGGGGGGTCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCAACGATC-GGGGGGTTGCGGGGGGTGTGCGCACATGATG
* * * * * * * *
15215885 TGCAATGGGTGCTGGTGCTTGGCCTTTATATGGGCCCCTTGTCCGTCATCAAACCTTGAGAAGC-
194 TGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AGCT
*
15215949 CACACTCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15216014 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAA-TTAT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTT-T
* *
15216078 TTTGTGCACGCCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCCG
387 TTTGTGCATGCC-AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
15216143 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTC
*
15216208 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
*** * * *
15216273 TGGCATTGGCACATAGAAATACGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCATGGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
15216338 TTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGTCTGCTCGTTTCGTCGGTTGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
15216403 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACTGGAGTGAGGATTGTGGCAGTAGGAT
710 CTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGGATTGTGCCAGCAGGAT
* * * * * * *
15216468 CGACAGCACGTAGAGGGGGACCCGGCAAATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGACTG
775 CGACAGCAAGTAGAGGGGGACCCGTC-GATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
* *
15216533 AGCACCCGCACGCTCATTT--T--G-TG-----GG--T-T-GA---C--T--TAG-----
839 AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
* * *
15216567 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGATAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
15216632 CTCGAGCATGTGTTGGAGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * *
15216697 ACCTGACCGGTGGCATCGGGGTTCCGACGATCGGGAGGG-T-CGAGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGG-GGGTTGCGGGGGGTGTGCGCACATGATGT
* * * *
15216760 GCGATGGGTTCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCTTCAAACCTCTAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCA
* *
15216825 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAA
260 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15216890 TGGGGATACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTT-AATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TTGAAGTTTTT
* * * *
15216954 TGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCCTCTGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
15217019 AAATTTTTAAAAATCCCGAACCACAAAATGTTTCAAAAATCATGAAAAATAAAAAACGAGTCTTC
454 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTC
** *
15217084 TTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * *
15217149 CATTGGCATGCACAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15217214 TGCATCCCGTCTCTCTGGCCGGCGTCGTG---CCCGCCCGCCCGCTCGTTTCGTCGCTTGGCTTA
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
15217276 GGCATACGGAGCTCATTCCCAGTCTAAGATCGAATCGGACTGAGGATTGTGCCAGCAGGATCGAC
714 GGCATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGGATTGTGCCAGCAGGATCGAC
** * * *
15217341 AGCAAGTAGAGGGGGATCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCA
779 AGCAAGTAGAGGGGGA-CCCGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
15217406 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATTCCTAGTCTAA
843 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
* * * *
15217462 GCATCCGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGC-AGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * * *
15217526 GCTCGGGCATCTGTTGGTGTCGTATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCGTCGAAG
65 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
15217591 AACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGTTGGGGGGCGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCAACGATC-GGGGGGTTGCGGGG-GGTGTGCGCACATGAT
* * * *
15217656 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAGCT
193 GTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCT
*
15217721 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
258 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15217786 AATGGGGACACTTTTTTGAAATGGCCACAAAATCTTGTACATTTCGAGTTTTTAGTTGATGTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTTT
* * *
15217851 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAGAGCCAAAACTCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
15217916 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATTATGAAAAATAAAAAACTAGTCGT
453 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGT
* *
15217981 CTTGCCCTGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTAAAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
*
15218046 GCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *** * * * *
15218111 GCGTATCCTGTCTCTCCAACCGGTGTAGTACCCGCCCGCCCGCTCCGCTTGTTTCGTCGATT-GC
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCCGC-CCGCTCGTTTCGTCGGTTGGC
* *
15218175 TTGGGCATAACGGAGTTTCATTCC
711 TTAGGCAT-ACGGAG-CTCATTCC
15218199 TAGTATATAG
Statistics
Matches: 3001, Mismatches: 345, Indels: 132
0.86 0.10 0.04
Matches are distributed among these distances:
869 149 0.05
870 3 0.00
871 1 0.00
873 255 0.08
874 198 0.07
875 6 0.00
876 147 0.05
877 1 0.00
879 2 0.00
881 3 0.00
882 1 0.00
883 3 0.00
885 1 0.00
886 1 0.00
888 2 0.00
890 4 0.00
892 2 0.00
894 1 0.00
895 142 0.05
896 4 0.00
897 7 0.00
898 450 0.15
900 1 0.00
901 4 0.00
902 321 0.11
903 28 0.01
904 213 0.07
905 742 0.25
906 308 0.10
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGTTGCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCAC
ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACTGAGGATTGTGCCAGCAGGATCGACAG
CAAGTAGAGGGGGACCCGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
ACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
Found at i:15215702 original size:26 final size:26
Alignment explanation
Indices: 15215665--15215717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15215655 GTTGACTTAG
*
15215665 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15215691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15215717 G
1 G
15215718 ATCGTATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15220730 original size:466 final size:465
Alignment explanation
Indices: 15219860--15220784 Score: 1699
Period size: 466 Copynumber: 2.0 Consensus size: 465
15219850 TGCGGCAGCA
15219860 CATGCTGGGCTCGGCCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTCATGCATC
1 CATGCTGGGCTCGGCCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTCATGCATC
*
15219925 GCCGAAGAACCTGACCGGCAGCATTGGGGTTCTGGTGATCGGGGGGGTCGGGAGGGGTGTGCGCA
66 GCCGAAGAACCTGACCGGCAGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGAGGGGTGTGCGCA
*
15219990 CATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCG
131 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCG
15220055 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGT
196 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGT
*
15220120 GTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
261 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
15220185 ATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTCCT
326 ATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTCCT
* * * *
15220250 TCCGAAAAAATCTTAAAAAATCTCGAATTGAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGG
391 TCCGAAAAAATCTTAAAAAATCTCGAACTGAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGA
15220315 GTCATCTTGC
456 GTCATCTTGC
* *
15220325 CATGCTGGGCTCGGGCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTCGGTGCAT
1 CATGCTGGGCTCGGCCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTC-ATGCAT
*
15220390 CGCCGGAGAACCTGACCGGCAGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGCA-GGGTGTGCG
65 CGCCGAAGAACCTGACCGGCAGCATTGGGGTTCTGGCGATCGGGGGGGTCGGG-AGGGGTGTGCG
* *
15220454 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
129 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCT
15220519 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAT
194 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAT
15220584 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
259 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
15220649 GAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTC
324 GAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTC
**
15220714 CTTTTGAAAAAATCTTAAAAAATCTCGAACTGAAAAAGTTTTGAAAATCATGAAAAATAAAAAAT
389 CTTCCGAAAAAATCTTAAAAAATCTCGAACTGAAAAAGTTTTGAAAATCATGAAAAATAAAAAAT
15220779 GAGTCA
454 GAGTCA
15220785 AATGGTCACA
Statistics
Matches: 444, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
465 57 0.13
466 386 0.87
467 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (465 bp):
CATGCTGGGCTCGGCCATGTGTTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCGTCATGCATC
GCCGAAGAACCTGACCGGCAGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGAGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTCCT
TCCGAAAAAATCTTAAAAAATCTCGAACTGAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGA
GTCATCTTGC
Found at i:15220908 original size:174 final size:175
Alignment explanation
Indices: 15220608--15220958 Score: 519
Period size: 174 Copynumber: 2.0 Consensus size: 175
15220598 GACACTTTTT
*
15220608 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAA
1 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * ***
15220673 AAATACAAGGATCACGTCTACCAAGTTTGCGGGCAAAACTCCTTTTGAAAAAATCTTAAAAAATC
66 AAATACAAGGATCACGTCTACCAAGTTTGCAGGAAAAACGCCTTCCAAAAAAATCTTAAAAAATC
* * * * *
15220738 TCGAACTG-AAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAG
131 CCGAACCGCAAAAAATTTTAAAAATCATGAAAAATAAAAAACGAG
*
15220782 TCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
1 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
*
15220847 AAATACAAGGTTCACGTCTACCAAGTTTG-AGGAAAGAACGCCTTCCAAAAAAA-CTTTAAAAAA
66 AAATACAAGGATCACGTCTACCAAGTTTGCAGGAAA-AACGCCTTCCAAAAAAATC-TTAAAAAA
* *
15220910 TCCCGAACCGCAAAAAATTTTAAAAATCGTGAAAAATAGAAAACGAG
129 TCCCGAACCGCAAAAAATTTTAAAAATCATGAAAAATAAAAAACGAG
15220957 TC
1 TC
15220959 GTCTTGCCAT
Statistics
Matches: 158, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
173 5 0.03
174 120 0.76
175 33 0.21
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (175 bp):
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGCAGGAAAAACGCCTTCCAAAAAAATCTTAAAAAATC
CCGAACCGCAAAAAATTTTAAAAATCATGAAAAATAAAAAACGAG
Found at i:15222066 original size:26 final size:26
Alignment explanation
Indices: 15222030--15222082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15222020 GTTGACTTAG
15222030 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15222056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15222082 G
1 G
15222083 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15223798 original size:25 final size:26
Alignment explanation
Indices: 15223760--15223811 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15223750 GTTGACTTGG
*
15223760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
15223786 GCATAC-GAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15223811 G
1 G
15223812 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15225001 original size:891 final size:894
Alignment explanation
Indices: 15222202--15227721 Score: 6474
Period size: 891 Copynumber: 6.2 Consensus size: 894
15222192 CCGACGGCAT
* * * *
15222202 TGGTACTTGGCCCTCATATTGGCCCTCTATCCCTCATCAAACCTCGAGCACTCACACCCCTTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15222267 AGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGATACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
15222332 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAAGCCAG
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** **
15222396 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTGCAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
15222461 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
261 ATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15222526 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTGCAAGCCATAATAATGGCATTGGCACGCA
325 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACGTA
* * *
15222591 AAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCCGTCT
390 GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
15222656 CTCTGGCCGACGTAGTGCCTGCCCGTCCACTCGTGTCGTCGGTTGGCTTAGGCATACGGAGTTCA
455 CTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
15222721 TTCCCAATCTAAGATCGAACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGTATGCAGAGGGGG
520 TTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTATGCAGAGGGGG
* * ** * *
15222786 ACCCGGTCGATCCCCGGCTTGCACATCTTGCCCCTCT-GTCGGCTGAGCACCCGCACGTTCATTT
585 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTT
* **
15222850 CACGGGTTGACTTGGGCATACAAAGTTCATT-CCAGT-TAAGCATA-GGAGTTCATTCCTAGTCT
650 CGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCT
* *** ** * *
15222912 AAGATCGGATTGGACCGAGGGTTACGATAGCACATTCTGGGCTTGGGCATGTGTTGGTGCCGCAT
715 AAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCAT
* * * * * *
15222977 TTTTCTTCGCCGGGGCACCGTCGTCGGAGCGTCACCAAAGAACCTGACCGACGGGATTGGGGTTC
780 TTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTC
* *
15223042 C-AGCGATCGGGGGGCCAGGGTGGTGTGCGCACATGATGTGTGATGGGTGC
845 CGA-CGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
15223092 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15223157 AGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCGTTGAAGTGTC-GAAAATGGGGACACT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACT
* * *
15223221 TTTTTCAAATTGTCACAAAATCTTGTCCACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
130 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** *
15223285 GCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
** ** *
15223350 AATCCCGAACCACAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAA
260 AAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15223415 CTTCACGTGGAGGCTTAAGAGACAATTGTATGAATTTATAAGCCATAATAATGGCATTGGCACGT
324 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACGT
* *
15223480 AGAAATATAAAGATGTACCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGTC-TCCCGT
389 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-CATCCCGT
* *
15223544 CTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
453 CTCTCTGGCCGGCGTAGTGCCTGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
15223609 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGTAGCAGGATTGGCAGTATGCAA
514 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTATGCAG
* * * * *
15223674 AGGGGGACCC-AGTCGAGCCCTGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACA
579 AGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
15223738 TTCGTTTCGTGCGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTC
643 TTCGTTTCGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
* * * *
15223802 ATAGTCTAAGATCAGATCAGACCGAGGGTTACGGCGGCACATTCTGGGCTCGGGCATGTGTTGGT
708 CTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGT
* *
15223867 GTCGCATTTTTCTTC-TCCCGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCAT
773 GCCGCATTTTTCTTCGT-CGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCAT
**
15223931 TGGGGTTCCGGTGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
837 TGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * *
15223989 CGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTCAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15224054 AGAGCATTTGACATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
15224119 TTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTAGCTGAATTGTGTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15224184 CAAAAATACAAGAATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* **
15224249 ATCCAGAACCGTGAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
261 ATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
15224314 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACATA
325 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACGTA
* * * *
15224379 GAAATATGAAGATCTACCTAAACCCACCTATCACCCTATCGATCCACAGCTTACGCATCCCGTCT
390 GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
15224444 CTTTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
455 CTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
15224509 TTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGTAGGATCGACAGTATGCAGAGGGGG
520 TTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTATGCAGAGGGGG
* ** * *
15224574 ACCCGATCGATCCCCGGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGCACCTGCATGTTCGTTT
585 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTT
* * *
15224639 CGCGGGTTG-CTCGGGCATACGAAGTTCATT-GCAGT-TAAGCATA-GGAGTTCATTCCTAGTCT
650 CGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCT
* * * *
15224700 AAGATCGGATCAGACCGAGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGTTGGTGCTGCAT
715 AAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCAT
* * * * *
15224765 TTTTCTTCATCGGGGCACTGTCGTCGGAGCATCGCCAGAGAACCTGACCGACGGGATTAGGGTTC
780 TTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTC
*
15224830 CGACGATCGGGGGGCCAGGGTGGTGTGCGCACATGATGTGCGATGGGTGC
845 CGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
15224880 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
15224945 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
15225010 TTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTAGCTGAATTGTTTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
15225075 CAAAAATACAAGAATCACATCTCCCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* ** * *
15225140 ATCCAGAACTGTAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAATGAGTCGTCTTGCCATGAAAC
261 ATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15225205 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTTACAAGCCACAAAAATGGCATTGGCACGT
325 TTCACGTGAAGGCTTAAGGGACAATTGTATGAA-TTTACAAGCCATAATAATGGCATTGGCACGT
* * *
15225270 AGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
389 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * **
15225335 TCTCTGTCCGGCGTAGTGCCCGCCCGCTCGCCCGCCCACTCGTTTTATCGGTTGGCTTAGGCATA
454 TCTCTGGCCGGCGTAGT----G--C-CT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * *
15225400 TGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATTGGCAGCACG
511 CGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTATG
** * * * * * *
15225465 CAGAGCTGGACTCGATCGATTCCAGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCCTCA
576 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * * **
15225530 CGCTCGTTCCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAG--T----ATA---AG-----
641 CGTTCGTTTCGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * *
15225581 ----A-TC---G----GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGTTG
706 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* *** *
15225634 GTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTTGGAGAACCTGACTGGCGGCA
771 GTGCCGCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCA
* * * * * *
15225698 TTTGGGTTCCGACAATCGGGGGGTCGGGGGGCCCGGGGGGGTTCTGCGCACATTATGTGTGATGG
836 TTGGGGTTCCG---A-C----GATCGGGGGG-CCAGGGGGG-TGTGCGCACATGATGTGCGATGG
15225763 GTGC
891 GTGC
*
15225767 TGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15225832 AGAGCATTTGAGATTTTACTGGTTT-CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGTACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
15225896 TTTTCAACTGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCTTGCCA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
15225961 ATAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCCAAAAAAGATTTTAAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-ATTTTAAA
**
15226026 AAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
259 AAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
15226091 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
323 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACG
* * *
15226156 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCCATCCACGGCTTGCGCATCCCGT
388 TAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
15226221 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGTCCGCTCTTTTCGTCGATTGGCTTAGGCTT
453 CTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG--C-T-CG----TTTCGTCGGTTGGCTTAGGCAT
* * * * *
15226286 ACGGAGTTCATTCCCAGTCTTAGATTAGATCGGACCGAGGGTT----------G--CG---GTA-
510 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTAT
* * *
15226335 GC--------A----A--GAT--CC-G--T-AGCATCCTGCCCCACTGGCCGGCTGAGCACCCGC
575 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * * * *
15226380 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
640 ACGTTCGTTTCGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
* * * ** ** *
15226445 TTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTTGCACATGCTGGGCTCGATCATGTGCT
705 TTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTT
* * * * * * * *
15226510 GGTGCCACATTTTTCTTCGCCGGAGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGTGGC
770 GGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGC
*
15226575 ATTGGGGTTCCGAAGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
835 ATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * **
15226635 TGCTACTTGACCCTTATATTGGCCCTCTATCCATCATCAAACCTTAAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
15226700 AGGGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
15226765 TTTTCAAATGGTCACAAAATCTTATACAATTTGAGATTTTGGCTGATTTTTTTTTTGTGCATGCC
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTTTGTGCATGCC
15226830 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
194 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * * *
15226895 AAATCCCGAACCGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAAGAA
259 AAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *** *
15226960 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAA--GATGTGCC-T-A-AA--GC-----CACC
323 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACG
* * ** * * *** * * *
15227013 TACCACCATATCGACCATG-A-CTTAA-GCA--T-CCTGTCTCTC--TGGC-CGGCGTG-G-A--
388 TA-GA-AATAT-GAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CCACGGCTTGCGCATC
* * * *
15227065 --G-C-C-C--GCC--C-----GCCCGCCCTCTCGCTTGTTTCGTCGGTTGGCTTAGGCATAC-G
449 CCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *** * * * * * *
15227115 AGTTCATTCCCAATCTAAGATTGGACC-GTATCGAGGGTTGTGGTAGCAGGA-CTGGCAGCACGC
514 AGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAGGGTTGCGGCAGCAGGATC-GACAGTATGC
* * ** * * * *
15227178 AGAGGGTGACCTGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
577 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * * *
15227243 GCTT-GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATATGGAGTTCAT
642 G-TTCGTTTCGCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
* * * * * * * *
15227307 TCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTACATGCTGGGGTCGGGCATGGGCTA
706 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * * *
15227372 GTGCCGTATTTTTCTTGAGCATCGTCGG-AGCATCGCCGGAGCATCGCCAGAGAA-CTTACCGGT
771 GTGCCGCATTTTTCTT---CGTCG-GGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGC
* * * * * **
15227435 GACATTTGGGTTTTCG-TGATCGATGGGGCC-GGGGGGTGCACGCACATGATGTGCGATGGGTGC
832 GGCA-TTGGGGTTCCGACGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
15227498 TGGTACTTGACCCTTATATTGGGCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCTTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
15227563 AGAGCATTTGAGA-TTTACAGGTTTTGCTGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AGAGCATTTGAGATTTTACAGG-TTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
15227627 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTATGCATGGC
129 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
15227692 AACAAAAATACAAGGATCACGTCTACCAAG
194 AACAAAAATACAAGGATCACGTCTACCAAG
15227722 CCATGAAACT
Statistics
Matches: 4054, Mismatches: 443, Indels: 294
0.85 0.09 0.06
Matches are distributed among these distances:
824 1 0.00
825 33 0.01
826 22 0.01
830 1 0.00
831 1 0.00
832 1 0.00
834 11 0.00
835 1 0.00
836 1 0.00
837 1 0.00
839 1 0.00
840 2 0.00
841 5 0.00
843 1 0.00
844 1 0.00
845 1 0.00
846 1 0.00
849 1 0.00
850 1 0.00
851 71 0.02
852 8 0.00
853 2 0.00
854 8 0.00
855 5 0.00
857 13 0.00
858 6 0.00
859 5 0.00
860 8 0.00
861 157 0.04
862 55 0.01
863 129 0.03
864 112 0.03
865 2 0.00
866 1 0.00
867 4 0.00
868 104 0.03
869 181 0.04
870 79 0.02
871 6 0.00
872 2 0.00
873 1 0.00
875 2 0.00
877 107 0.03
878 107 0.03
879 8 0.00
880 2 0.00
881 3 0.00
882 2 0.00
883 3 0.00
885 11 0.00
886 88 0.02
887 334 0.08
888 98 0.02
889 2 0.00
890 441 0.11
891 532 0.13
892 107 0.03
893 21 0.01
894 274 0.07
895 54 0.01
896 7 0.00
897 350 0.09
898 274 0.07
899 2 0.00
900 156 0.04
901 20 0.00
902 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAATAATGGCATTGGCACGTAG
AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGTATGCAGAGGGGGA
CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTC
GCGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTA
AGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
TTTCTTCGTCGGGGCACCGTCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCC
GACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
Found at i:15226441 original size:26 final size:26
Alignment explanation
Indices: 15226405--15226457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226395 GTTGACTTAG
*
15226405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15226431 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15226457 G
1 G
15226458 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15227404 original size:11 final size:11
Alignment explanation
Indices: 15227388--15227419 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
15227378 TATTTTTCTT
*
15227388 GAGCATCGTCG
1 GAGCATCGCCG
15227399 GAGCATCGCCG
1 GAGCATCGCCG
15227410 GAGCATCGCC
1 GAGCATCGCC
15227420 AGAGAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.34, G:0.34, T:0.12
Consensus pattern (11 bp):
GAGCATCGCCG
Found at i:15232390 original size:897 final size:891
Alignment explanation
Indices: 15227721--15235075 Score: 9278
Period size: 897 Copynumber: 8.2 Consensus size: 891
15227711 CGTCTACCAA
*
15227721 GCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15227786 TTGGCATGCAAAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GACTTGC
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGC
* * * * *
15227850 GCTTCTCGTCTCTCTGGCCGACGTAATGCCCGCCAGCCCGCCTGCTCGTTTCGTCGGTTGGCTTG
130 GCATCCCGTCTCTCTGGCCGACGT-A-G--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * **
15227915 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTAGCAGCAGGATCGGC
191 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* *** * * * * *
15227980 AACATGTATAAGGGGACCCGATCGATCCTCGGCTTGCGCATCTC-ACCCTCCTGGCCGACAGAGC
256 AGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGC
* * *
15228044 GCCCGCAC-CGTCATTTGGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACG
320 ACCCGCACGC-TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *** *
15228108 GAGTTGATTCCTAGTGTCAGATCAGACCGGATTAAGGGTTGCGGCAGCACATG-TTGGCAT-GGG
384 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGG
* * *
15228171 CATGTGTTGGTGCCGA-ATTTTTCTTCGTCGGGGGACCATCATCGGAGCAT-CACTGGAGAACCT
448 CATGTGTTGGTGCC-ACATTTTTCTTCGTCGGGGCACCATC-T-TGAGCATGC-C-AGAGAACCT
* * * * *
15228234 GACCGACGGCATTGGGGTTCCGACGATCTGGCGGCC-GAGGGGGTGTGTGCACATGATGTGTGAT
508 GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCAG-GGGGGTGTGCGCACATGATGTGCGAT
* *
15228298 -GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT--CTCATCAAACCTCGAGAACTCACACTC
572 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
15228360 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
637 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
15228425 ACAC-TTTTTCGAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
702 ACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
* * * *
15228488 ATGCCAACAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAAATCCTTTCGAAAAAATT
766 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATT
* * * *
15228553 TAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
830 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * *
15228615 GCCATGAAACTTCACGAGAAGGCTTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15228680 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* *
15228745 CATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCACTCTCGTTTCATCGGTTGGC
131 CATCCCGTCTCTCTGGCCGACGTA--G--CGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGC
* * * * *
15228810 TTAGGCAGACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAAGATC
188 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
** * ** * * * * *
15228875 GGCAGCATGCAGAGGGGGACTTGGA-CTATCCCCGGCTTGCGCAT-CCGCCCCTTTGGCTGGCGG
253 GGCAGCACACAGAAGGGGAC-CCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
15228938 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGCATA
317 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
15229003 TGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGCCAGCACATGCTGGGCTCGG
382 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * ** * *
15229068 GCATGTGTTGGTGCCGCTTTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTG
447 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--CTTGAGCAT-GCCAGAGAACCTG
* ** **
15229133 ACC-ATTGGCATTGGGGTTCTAGCGATCGGGGCGGCTGGGGGGCGGTGTGCGCACATGATGTGCG
509 ACCGA-CGGCATTGGGGTTCCGGCGATCGGGG-GGC-CAGGGG-GGTGTGCGCACATGATGTGCG
* *
15229197 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACAC
570 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15229262 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
635 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15229327 GGACACTTTTTTCAAATGATCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTATG
700 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
* *
15229392 CATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAAT
765 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAAT
* * *** *
15229457 TTTACAAAATCTCGAACCCCGAAAAGTATCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
829 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
15229520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15229585 TTGCCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* ** * * *
15229650 CATCCCGTCTCTCTGGTCGGTGAAGTGCCCGCCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
131 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
15229715 ACGAAATTCATTCCTAGTCTAGGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCAC
196 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * *
15229780 ACTGAGGGGGACCCGGTCGATCCTTC-GCTTGTGCATCCCGCCCCCTCTGGCCGGTTGA-CACCC
261 ACAGAAGGGGACCCGATCGATCC-TCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCACCC
* * * *
15229843 ACACGCTC-GTTCGTGGGTTGGACTTAGGCA-ACAGAGTTCATTCCCCAGTTCCTATGCATACGG
324 GCACGCTCATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATT-CCCAG-T-CTAAGCATACGG
* *
15229906 AGTTCATTCCCA-TCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGGCTCGGGC
385 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGC
*
15229970 ATGTGTTGGT-CCACA-TTTTCTTCCGTCGGGAGCCACCATCGTTGAGCATTGCCAAAGAACCTG
449 ATGTGTTGGTGCCACATTTTTCTT-CGTCGGG-G-CACCATC-TTGAGCA-TGCCAGAGAACCTG
* * * *
15230033 ACCGACGGCAATTGGGGTTCCGGTGATCGATGGGGCCGGGGGCCGGTGTACGC-CATGATGTGCG
509 ACCGACGGC-ATTGGGGTTCCGGCGATCG-GGGGGCCAGGGG--GGTGTGCGCACATGATGTGCG
*
15230097 ATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAAACCTCGAGAACTCACG
570 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC-
* * *
15230162 ACCCCCTTAAAGAGGCA-TTGGGATTTTACAGTTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
633 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15230226 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
697 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
15230291 TTGCATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
762 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAA
* *
15230356 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCCTCT
826 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
15230421 T
891 T
* *
15230422 GCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAAAATTGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15230486 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACTGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
*
15230551 CATCCCATCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
131 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
15230616 ACGGAGTTCATTCCCGGTCTAAAATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCGC
196 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * ** * * * * * **
15230681 GCAGAGGGGGACCCGGCCAATCCCCGGCTGGCGCATCCCGCCCCTCTGGCCGGTTAAGTGCCCGC
261 ACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * * * *
15230746 ACGCTCATTGCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCTTATGCAGTTCA
326 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
15230811 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACACATGCTGGGCTTGGGCATGTGCT
391 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* *
15230876 GGTGCCACATTTTTCTTCGCCGGGGCACCA---T---C--GCCGGAGAACCTGACCGACGGCATT
456 GGTGCCACATTTTTCTTCGTCGGGGCACCATCTTGAGCATGCCAGAGAACCTGACCGACGGCATT
* * * * * *
15230933 TGGGTTCCGACGATCGAGGGGCCA-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGAACTC
521 GGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
15230997 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACGCCATTAAAGAGCATT
586 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
15231062 TGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
651 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
15231127 TGGTCACAAAATCTTGTACAGTTTGAGATTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAGTA
716 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATA
* *
15231192 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTACAAAATCACGAA
781 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAA
*
15231257 CC-TCGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
845 CCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
15231304 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15231369 TTGCCATGTAGAAATATGAAGATGTGCCTAAGCTCACCTACCACCCTATCGATCCACAGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
** * * *
15231434 CATCCCGTCTCTCTGGCCGGTGAAGTGCCCGCCCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
131 CATCCCGTCTCTCTGGCCGACGTAGCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
15231499 TACGGAATTCATTCCTAGTCTAGGATCAGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCA
195 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * *
15231564 CACTGAAGGGGACCCGATCGATCCTTGGCGTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCA
260 CACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* ** * *
15231629 CACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTACGAATACGGAGTTC
325 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
15231694 ATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
390 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
15231759 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATGCCAGAGAACCTGACCGACGGC
455 TGGTGCCACATTTTTCTTCGTCGGGGCACCATC-TT-GAGCATGCCAGAGAACCTGACCGACGGC
* *
15231824 ATTGGGGTTCCGGTGATCGGTGGGGCCAGGGGCGGTGTACGCACATGATGTGCGATGGGTGCTGG
518 ATTGGGGTTCCGGCGATCGG-GGGGCCAGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
15231889 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGA
581 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15231954 GCATTTGGGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
646 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
15232019 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTTTTTGCATGCCAAA
711 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT-TTTTTTTGCATGCCAAA
*
15232084 AAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAA
774 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCGAAAAAATTTTAAAAAA
* * * *
15232149 TCCCGAACCGTAAAAAGTTTCAAAAGTCTTAAAAAATAGAAAACGAGTCCTCTT
838 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
15232203 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15232267 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
**
15232332 CATCCAATCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
131 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** ** * * *
15232397 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCGG-AGGCGGGATCGGTAGCA
196 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA-GCAGGATCGGCAGCA
* ** * * * *
15232461 CCCAGAAGGGGACCCGATCGATCCTCGATTTGCGCATCCCACCCCTCTGGTCGACTGAGCACCTG
260 CACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
*
15232526 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--TG-G---
325 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* **
15232584 A----C---C--AGAT----------CGAGGGTTACTACAGCACATGCTGGGCTCGGGCATGTGT
390 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
** * *
15232630 TGGTGCCGGATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGG
455 TGGTGCCACATTTTTCTTCGTCGGGGCACCATC-T-TGAGCAT-GCCAGAGAACCTGACCGACGG
* * ** * * *
15232695 CTTTGAGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGG
517 CATTGGGGTTCCGGCGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
15232760 TATTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGA
581 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
15232825 GCAATTGAGATTTTACAGGTTTGGTGTCAGTAGCCATTAAAGTGTCGGAAATGGGGACACTTTTT
646 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
15232890 TCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTCTGCATGCCAACAA
711 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAA
*
15232955 AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATC
776 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATC
** * *
15233020 TTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTC
840 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
**
15233072 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAACA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *** ** * *
15233137 TTGACACATAGAAATATGAAGACATGCCTAAACCCACCTACCACTCTATCGTTCCACAGCTTGCG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* *
15233202 CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCACTCGTTCGTTTCGTCGGTTGGC
131 CATCCCGTCTCTCTGGCCGACGTA--G--CGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGC
* ** *
15233267 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCACCAGGATC
188 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * ** * *
15233332 AGCACCACGCAGATGGGGACCCGGCCGATCCTTGGCTTGCGCATCCCG-CCCTCTGGCCAGCTGA
253 GGCAGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
15233396 GC-CACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
318 GCAC-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
15233460 TGGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGTAGCACATGCTGGGCTCGA
382 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * *
15233525 GCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGCCACCA---T---CA--CCGGAGAACCTGACC
447 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTTGAGCATGCCAGAGAACCTGACC
** * * * * * *
15233582 GGTGACATTAGGGTTCCGGTGATCGAGGGCGACAGGGGGGGTGTGCGCACATGATGTACGATGGG
512 GACGGCATTGGGGTTCCGGCGATCG-GGGGGCCA-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
15233647 TGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTGACACCCCCT
575 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
15233712 TAAAGAGCATTTGAAATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGGAATGGGGACA
640 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15233777 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTTGCATGC
705 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
* * *
15233841 CAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAA
770 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAA
* * * *
15233906 AACATCCCGATCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
834 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* ** * **
15233964 GCCATGAAACTTCACGTGAAGG-TTGAAGGGACCATTGTTTGAATTTACAAGTGATAAAATTACC
1 GCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15234028 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCATGC
65 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * *
15234093 GCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCGCCCGCCTGTTCGTTTCGTTGGTTGG
130 GCATCCCGTCTCTCTGGCCGACGTA--G--CGCCCGCCCGCCCG-C---TCGTTTCGTCGGTTGG
* * ** * * * * *
15234158 CTTAGGTATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAACCTAGGGTTGCAGTAGTAGGAT
187 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * ** ** * * * *
15234223 CGACAGCGCGTAGAATAGGACCCG-GCTAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACT
252 CGGCAGCACACAGAAGGGGACCCGATC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * *
15234287 GAGCACCCGCACGCTCATTTTATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAT
316 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * ** * *
15234352 ACGAAGTTCATTCCCAGTAC-AAGATCGGATTGAACCGAGGGTTGCGGTAGCACATGCTGGGCTC
381 ACGGAGTTCATTCCCAGT-CTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * ** * * * *
15234416 GGCCAAGTGTTGGTGCTGCATTTTTGTTCATTGAGGCACCA---T-----TGCCAGAGAACCTGA
445 GGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTTGAGCATGCCAGAGAACCTGA
* * * * * * *
15234473 CTGGCAGCGTTGGGGTTCTGGTGATCAGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGG
510 CCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGG
* *
15234537 GTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
574 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
15234602 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
639 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15234667 ACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTGGCTGAATTTTTTTGTGCAT
704 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTTTGCAT
** * * *
15234731 GCCACCAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTGCTTCCGAAAAAATTTT
768 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTT
* * ** ** * *
15234796 AAAAAAAATTCTCAAACCACAAAAAGTTTCAAAAATTATCAAAAATAGAAAACGAGTCGTCTT
832 --AAAAAA-TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
15234859 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
15234924 TTGTCACGCAGAAATATGAAGATTTGCCTAATCTCACCTACCACCCTATCGATCCACGGCTTGAG
66 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * *
15234989 CATCCCATCTCTCTGGCCGACGTA--G--TGCCCGTCCGCTCGTTTCCTCGATTGGCTTAGGCAT
131 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
15235050 ACGGAGTTCATTCCCAGTCTAAGATC
196 ACGGAGTTCATTCCCAGTCTAAGATC
15235076 GTCGGAGCAT
Statistics
Matches: 5658, Mismatches: 660, Indels: 297
0.86 0.10 0.04
Matches are distributed among these distances:
868 2 0.00
869 162 0.03
870 99 0.02
871 266 0.05
872 45 0.01
873 2 0.00
874 10 0.00
876 2 0.00
877 69 0.01
878 115 0.02
879 1 0.00
880 1 0.00
881 12 0.00
882 272 0.05
883 174 0.03
884 336 0.06
885 3 0.00
886 8 0.00
887 23 0.00
888 24 0.00
889 1 0.00
890 3 0.00
891 203 0.04
892 474 0.08
893 395 0.07
894 203 0.04
895 193 0.03
896 9 0.00
897 611 0.11
898 343 0.06
899 265 0.05
900 199 0.04
901 342 0.06
902 326 0.06
903 66 0.01
904 134 0.02
905 265 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
ACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
GGTGCCACATTTTTCTTCGTCGGGGCACCATCTTGAGCATGCCAGAGAACCTGACCGACGGCATT
GGGGTTCCGGCGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
Found at i:15233458 original size:26 final size:26
Alignment explanation
Indices: 15233429--15233481 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15233419 GTTGACTTAG
15233429 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15233455 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15233481 G
1 G
15233482 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15234066 original size:892 final size:890
Alignment explanation
Indices: 15232722--15235076 Score: 3248
Period size: 892 Copynumber: 2.6 Consensus size: 890
15232712 TCGGGGGGGT
* * *
15232722 CGGGGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTATTTGGCCCTTCTATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15232787 CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGGTGT
66 CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
15232852 CAGTAGCCATTAAAGTGTC-GGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
131 CAGTAGCCATTAAAGTGTCTGG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15232916 TTCGAATTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
195 TTTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
15232981 TTGGGGCAAAAACTCCTT-TCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAAT
260 TTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* * *
15233045 CGTGAAAAATAGAAAACGAGTCATCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
324 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
15233110 ATGAATTTACAAGCCATAAAAATAACATTGACACATAGAAATATGAAGACATGCCTAAACCCACC
389 ATGAATTTACAAGCCATAAAAATAACATTGACACGCAGAAATATGAAGATATGCCTAAACCCACC
* * * * *
15233175 TACCACTCTATCGTTCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCC
454 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGTCC
15233240 GCCCACTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
519 GCCC-C-CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
15233305 TAG-ACCGAGGGTTGCGGCACCAGGATC-AGCACCACGCAG-ATGGGGACCCGGCCGATCCTTGG
582 -AGAACCGAGGGTTGCAGCACCAGGATCGA-CACCACGCAGAAT-AGGACCCGGCCAATCCTCGG
* * * *
15233367 CTTGCGCATCCCG-CCCTCTGGCC-AGCTGAGC-CACCGCATGCTCGTTTCGTGGGTTGACTTAG
644 CTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCAC-CCGCACGCTCATTTCATGGGTTAACTTAG
* * *
15233429 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT-CTAAGATCAAACCGGA
707 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTAC-AAGATCAAACCGAA
* * * *
15233493 CTGAGGGTTGTGGTAGCACATGCTGGGCTCGAG-CATGTGTTGGTG-TCGCATTTTTCTTCGTCG
771 CCGAGGGTTGCGGTAGCACATGCTGGGCTCG-GCCAAGTGTTGGTGCT-GCATTTTTCTTCATCG
* *
15233556 -GGCCACCATCACCGGAGAACCTGACCGG-TGACATTAGGGTTCCGGTGATCGAGGGCGA
834 AGG-CACCATCACCAGAGAACCTGACCGGCAG-CATTAGGGTTCCGGTGATC-AGGGCGA
* *
15233614 CAGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTA
1 C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15233679 TCCCTCATCAAACCTCAAGAACTGACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTG
65 TCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15233744 TCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
130 TCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
15233809 TTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAATGATCACGTCTACCAAGT
195 TTTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
15233873 TTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAACATCCCGATCCGTAAAAAGTTTCAAAAATC
260 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
15233938 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TTGAAGGGACCATTGT
325 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGT
* ** * * * *
15234002 TTGAATTTACAAGTGATAAAATTACCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
389 ATGAATTTACAAGCCATAAAAATAACATTGACACGCAGAAATATGAAGATATGCCTAAACCCACC
* * * * *
15234067 TACCACCCTATCGATCTACGGCATGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCC
454 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGTCC
* * * *
15234132 GCCCGCCTGTTCGTTTCGTTGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATTGGAC
519 GCCC-CC-GTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * ** * * * *
15234197 CGAACCTAGGGTTGCAGTAGTAGGATCGACAGCGCGTAGAATAGGACCCGGCTAATCCTCGGCTT
582 AGAACCGAGGGTTGCAGCACCAGGATCGACACCACGCAGAATAGGACCCGGCCAATCCTCGGCTT
* *
15234262 GTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTTATGGGTTAACTTAGGCATA
647 GCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATA
* ** **
15234327 TGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTACAAGATCGGATTGAACCGAGG
712 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTACAAGATCAAACCGAACCGAGG
* *
15234392 GTTGCGGTAGCACATGCTGGGCTCGGCCAAGTGTTGGTGCTGCATTTTTGTTCATTGAGGCACCA
777 GTTGCGGTAGCACATGCTGGGCTCGGCCAAGTGTTGGTGCTGCATTTTTCTTCATCGAGGCACCA
** * * * * * *
15234457 TTGCCAGAGAACCTGACTGGCAGCGTTGGGGTTCTGGTGATCAGGGGGG
842 TCACCAGAGAACCTGACCGGCAGCATTAGGGTTCCGGTGATCAGGGCGA
* * *
15234506 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * **
15234571 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTAC
66 CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
*
15234636 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
15234701 CTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACATCTACCAAGTT
196 TTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * **
15234766 TGGGACCAAAACTGCTTCCGAAAAAATTTTAAAAAAAATTCTCAAACCACAAAAAGTTTCAAAAA
261 TGGGGCCAAAACTCCTTCTGAAAAAATTTT--AAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAA
* *
15234831 TTATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
323 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * * * *
15234896 TATGAATTTACAAGCCATAAAAATGGCATTGTCACGCAGAAATATGAAGATTTGCCTAATCTCAC
388 TATGAATTTACAAGCCATAAAAATAACATTGACACGCAGAAATATGAAGATATGCCTAAACCCAC
* *
15234961 CTACCACCCTATCGATCCACGGCTTGAGCATCCCATCTCTCTGGCCGACGTA--G-T-GCCCGTC
453 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGTC
* *
15235022 CG----C--TCGTTTCCTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
518 CGCCCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
15235077 TCGGAGCATC
Statistics
Matches: 1300, Mismatches: 142, Indels: 51
0.87 0.10 0.03
Matches are distributed among these distances:
883 46 0.04
886 1 0.00
891 215 0.17
892 445 0.34
893 394 0.30
894 14 0.01
895 183 0.14
896 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (890 bp):
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATAACATTGACACGCAGAAATATGAAGATATGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGTCCGC
CCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGAA
CCGAGGGTTGCAGCACCAGGATCGACACCACGCAGAATAGGACCCGGCCAATCCTCGGCTTGCGC
ATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTACAAGATCAAACCGAACCGAGGGTTG
CGGTAGCACATGCTGGGCTCGGCCAAGTGTTGGTGCTGCATTTTTCTTCATCGAGGCACCATCAC
CAGAGAACCTGACCGGCAGCATTAGGGTTCCGGTGATCAGGGCGA
Found at i:15236731 original size:26 final size:26
Alignment explanation
Indices: 15236695--15236747 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15236685 GTTGACTTAG
15236695 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15236721 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15236747 G
1 G
15236748 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15237774 original size:902 final size:901
Alignment explanation
Indices: 15235816--15244829 Score: 11669
Period size: 903 Copynumber: 10.1 Consensus size: 901
15235806 GTTGACTTAG
* * * **
15235816 GCATACGGAGTTTATTCCCAGTCAAAGATCGGATCGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15235881 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGGCACCATCGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCACCGGAGCATCGTCGGAG
* *
15235946 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15236010 GCAATGGGTGCTAGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15236075 CACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15236140 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATGCACTTTGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15236205 GTGCATGCCAACAAAAATACAAGGATCACGTTTACCATGTTTGGGGCCAAAACTCATTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * * *
15236270 AATTTTTAAAAATCCCGAACTGCAAAAAGTTTCAAGAATCGTGAAAAATAGAAAACGAGTGGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
15236335 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15236400 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * **
15236465 ACATCCCATCTCTCTGGACGGCGTAGTGCGCGCCTGCCCGCCAGCCCGCTCGTTTTGGTCGGTCA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGC-CGCCCGCCCGCCCGCCCGCTCG-TTTCGTCGGTTG
* * * * * *
15236530 GCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCAAGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGA
* * * *
15236595 TCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCATCCCTCTGGCCGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* *
15236660 GAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15236721 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * *
15236786 CTCGGGCATGTGCTGGTTCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATTGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
15236851 ACCTAACC-AGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTTTGCGCACATGATGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * *
15236915 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCATTATTCCTCATGAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15236980 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15237045 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
15237110 TATATGCCAACAAAAATAAAAGAATCACGTCTACCAAGTTTGGGG-AAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
15237174 TTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 -TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15237239 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
15237304 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
15237369 CATCCTGTCTCTCTGGCCGGCGTAGTGCCTACCCGGCCGCTCGCCTGATCATTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * ** *
15237434 TTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCGAGGGTTGTGGCAACAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATC
* *
15237499 AGCGGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * * ** * * *
15237564 GAGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCAAA
843 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15237623 GCATATGGAGTTCATTCCTAGCCTCAGATCGGATCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
15237688 CTCGGGCATGTGCTGGTACCACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
15237753 ACCTTACCGACGACTTTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
15237818 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15237883 CCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15237948 GGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAATTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
15238013 GCATGCCAATAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCTGTTTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAAA
* * * * * * *
15238078 TTTTGAAAAATCCCAAAACATAAAAAGGTTCGAAAAA-CGTGAAAAATAGTAAATGAGTCGTCTT
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15238142 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
15238207 TTGGCACATAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15238272 CATCCCATCTCTCGGGCCGACGTAGT-----------GCCCGTCCGCTCGTTTCCTCGATTGGCT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * **
15238326 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGCAATAGGATCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCG
* * *
15238391 ACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
779 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* *
15238456 CGCCCGTACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15238514 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * **
15238579 CTCGGGCAGGTGCTGGTGCCATATTTTTCTTC-GCTGGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
15238643 AACCTGACCGACAGCATTTGAGTTCCGGCGATCGGGTTGGCTGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGT
* *
15238708 GCGCTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15238773 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15238838 TAGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGTTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15238903 GTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAATA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * *
15238968 AATATTAAAAAATCCCGAACCTTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15239033 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15239098 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGTTTAC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
15239163 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGCCCACTCGTTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
15239228 CTTAGGTATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGGGGGTTACGACAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGAT
* ** ** * * *
15239293 CGGCAACACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCACCTCTGGCTGGCTC
777 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * *
15239358 AGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-TTAACCAGTCTAA
842 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAA
* * * *
15239418 GCATACGGAGTTCATTCCCAGTCTAAGAACGGATAGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15239483 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCA-C-T---------ATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
15239537 ACCTGAAC-AGCGACATTGGGGTTCCGGCGATCGGGGAAGCCGGGGGGGTGTGTGCACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
* * *
15239601 TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15239666 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15239731 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15239796 GTACATGCCAACAAAAATAAAAGGATCACGCCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* *
15239861 AATTTTACAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15239925 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15239990 ATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15240055 GCATCCCCTCTCTCTAGCCGGCGTAGT-----------GCCCGCCCGCTCGTTTCGTTGGTTGCC
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15240109 TTAGGCATATGCAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGG-TA-GCACAGCAAGAT
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-GCAGCAGGAT
* * ** *
15240172 TGGCAGCACGCAGAGGGGGACGCGATCGA-CCCTCGGATTGCG-----CA------T--CC--C-
777 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-CGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* *
15240220 -A---CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
841 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15240276 GCATATGGAGTTCATTCCCAGTCTCAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
15240341 CTCGGGCATGTGCTGGTACCACATTTTTCTTCATCAGGGCACCATCACCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
15240406 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGT
*
15240471 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15240536 CACCCCATTAAGGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15240601 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** **
15240666 GTGCATGCCAA-AAAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTTATTTGGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAA
* ** * ** * *
15240730 AATTTTAAAAAATCCCAAACCCAAAAAACTTTTGAAAATCGTCAAAAATAGAAAAAGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15240795 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15240860 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15240925 GCATCCCATCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * **
15240990 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCG-CCAGAGGGTTGTGGCAGCAGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTACGGCAGCAGGA
* * ** *** *
15241054 TCGGCAGCACACAGAGGGTGACCCGGCCGATCCGTGGCAAACGCATCCCTCCCCTCTGGCCGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* *
15241119 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15241180 GCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGCGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15241245 CTCAGGCTTGTGCTGGTGCCATATTTTTCTTCGTCGAGGCACCATCACCAGG-TCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACC-GGAGCATCGTCGGAG
* * * * *
15241309 AACCTGACC-AGCGACATCGGGGTTCCGACGATCGGAGGGGTC-GGGGGGTGTGCGTACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATG
* *
15241372 TGC-AGTGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAATCTCGAGAACT
193 TGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15241436 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15241501 AATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGTTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * *
15241566 TTGTTTATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
** ** * * * ** * *
15241631 AAAATTTTAAAAAATCCAAAACCACAATAAGTTTCAAAAATCATTAAAAATAGAAAACTTGCCAT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
15241696 CTTGCCATGAAACTTCACATGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
15241761 GCATTGGCATGCAGAAATAAGAAGATGTTCCTAGATCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15241826 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCAGCTCGCCCGCCCGCGCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * * *
15241891 GGCTTAGGCATACTGAGTTCATTCTCAGTCTAAGATTTGATCAGACTGAGGGATACGGCAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGG
* * ** * * ** * *
15241956 ATCGGCAGCACGTAGAGGAGGACCCGGTTGATCCCCGACTTGCACATCCTGCCCCTTTGGCTGGC
775 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * *
15242021 TGAGCGCCCGCACGTTAATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
15242083 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCCGACTGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * ** *
15242148 CTCGGGCATGTGCTGGTGTCGCATTTTTTTTCAACGGGGCACCATTACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
15242213 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGGGGTGTGCGCAAATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * * *
15242278 GATGGGTACTGGTACTTGACCCTTATGTTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15242343 CCCCCTTAAAGTGCATTTGACATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15242408 GGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15242473 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAAATCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAA
* ** * *
15242538 TTTTAAAAAATCTCGAACCGCCAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGGCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* ** * *
15242603 CTATGAAACTTCACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAATCCATAAAACTGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15242668 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15242733 ATCCCGTCTCTCTGGCCAACGTAGTGCCCGTCCGCCTGTCGGCCCGCTCGTTTCATCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * *
15242798 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATTGAGGGTTGCGGCAACAGGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGCAGGATC
** * * * * ** * *
15242862 AACAGCACACAGAGGGGGACCTGGCTGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTGACTGA
778 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * * *
15242927 GTGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCCAG--T--
843 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15242982 -C-TA---AG----------GTC--AGAT----T-GGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* **
15243025 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
15243090 ACCTGACCAACGGTATTGGGTTTCCGACGATCAGGGCGGCCGGGGGCGGAGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* * *
15243155 GCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGACCTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15243220 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15243285 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15243350 GTGCATACCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* * ** * *
15243415 AATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATTATGAAAAATAGAGAACGAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15243480 TGGCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** *
15243545 ATTGGCACGCTGAAATATGAAGATGTGCCAAAACCCACCTACCAACCTATCGATCCGTGGCTTAC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
15243610 GCATCCTATCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCCTACTCGTTTCGTCGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCC-GCCCGCCCGCCCGCCCG----CTCGTTTCGTCGG
* * **
15243675 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTACGGCAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
* * * * *
15243740 AGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
773 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * *
15243805 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** **
15243869 GCATACGGAGTTCTTTTCCAGTCTAAGTTCAGA-CTGGACCGAGGGTTGTGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTACGGCAGCACATGCTGG
* * * **
15243933 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
15243998 AACCTAACCGACGGCATTAGGGTTCCGACGATCAAGGGGGCCGGGGGGGTGTGCGCACATGATGC
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15244063 GCGATGGGTCCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15244128 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15244193 TGGGGACACTTTCTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15244258 TTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAGACCTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * * ** *
15244323 AATTTCATAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGAC
453 AATTTTA-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
15244388 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
15244453 CATTGGCTTGTAGAAATATGAAGATGGGCCTGAACCCACCTACCACCCAATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
15244518 CGTATCCCGTCTCTTTGGCCGACGTAATTCCCGCCCGTCCGCCAGCCCGCTCGTTTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGACGT-AGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
15244583 GCTTATGCGTATGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTACGACAGTAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGA
* * ** * * * *
15244648 TCGGCAGCACATC-GAGAGGGACCCAACCGATCCTCGACTTACGCATCCCACCCCTCTAGCCGGC
776 TCGGCAGCAC-GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* *
15244712 TGAGCACCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGCA-TTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTAA
* * * * * * *
15244774 GCTTACGGAGTTCATTCGCAGTCTAAGATCTGACCAGACTGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCA
15244830 AGATCGACAG
Statistics
Matches: 7064, Mismatches: 903, Indels: 284
0.86 0.11 0.03
Matches are distributed among these distances:
858 141 0.02
859 5 0.00
860 1 0.00
862 1 0.00
864 1 0.00
866 1 0.00
868 1 0.00
869 114 0.02
870 388 0.05
877 106 0.02
878 19 0.00
879 503 0.07
880 63 0.01
881 2 0.00
882 68 0.01
883 215 0.03
884 6 0.00
885 1 0.00
888 2 0.00
889 2 0.00
890 1 0.00
891 329 0.05
892 625 0.09
893 341 0.05
894 3 0.00
896 2 0.00
897 2 0.00
898 2 0.00
900 1 0.00
901 2 0.00
902 795 0.11
903 1644 0.23
904 781 0.11
905 308 0.04
906 3 0.00
908 261 0.04
909 320 0.05
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15238517 original size:26 final size:26
Alignment explanation
Indices: 15238488--15238540 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15238478 GTTGACTTAG
15238488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15238514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15238540 G
1 G
15238541 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15239428 original size:26 final size:26
Alignment explanation
Indices: 15239392--15239444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15239382 GTTGACTTAG
15239392 GCATACGGAGTTC-TTAACCAGTCTAA
1 GCATACGGAGTTCATT-ACCAGTCTAA
*
15239418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
15239444 G
1 G
15239445 AACGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:15240286 original size:26 final size:26
Alignment explanation
Indices: 15240250--15240299 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15240240 GTTGACTTAG
*
15240250 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15240276 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15240300 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15241184 original size:26 final size:26
Alignment explanation
Indices: 15241154--15241206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15241144 GTTGACTTAG
*
15241154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15241180 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15241206 G
1 G
15241207 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15242087 original size:26 final size:26
Alignment explanation
Indices: 15242057--15242109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15242047 GTTAACTTAG
*
15242057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15242083 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15242109 G
1 G
15242110 ATCGGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15243879 original size:26 final size:26
Alignment explanation
Indices: 15243843--15243895 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15243833 GTTGACTTAG
15243843 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
15243869 GCATACGGAGTTCTTTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15243895 G
1 G
15243896 TTCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15244912 original size:185 final size:184
Alignment explanation
Indices: 15244595--15245013 Score: 493
Period size: 185 Copynumber: 2.3 Consensus size: 184
15244585 TTATGCGTAT
* * * * * * *
15244595 GGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTACGACAGTAGGATCGGCAGCACAT
1 GGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACAT
* * *
15244660 CGAGAGGGACCCAACCGATCCTCGACTTACGCATCCCACCCCTCTAGCCGGCTGAGCACCCGCAC
65 AGAGAGGGACCCAACCGATCCTCGACTTAAGCATCCCACCCCTCTAACCGGCTGAGCACCCGCAC
* * * * *
15244725 GCTCATTTCTTGGGTTGACTTAGGCATACGGCA-TTCATTCCCAGTCTAAGCTTAC
130 GCTCATTTCGTGGGTTGACTTAGGCATACGG-AGTTAATTCCCAGTCCAAACATAC
* * *
15244780 GGAGTTCATTCGCAGTCTAAGATCTGACCAGACTGAGGGTTGCGGCAGCAAGATCGACAGTACAT
1 GGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACAT
* * * ** * ** *
15244845 AGAG-GAGGACCCGACCGATCC-CTGGCTTAAGCGTCCTGCCCCTCTAACCTGCTGAGCGGCTGC
65 AGAGAG-GGACCCAACCGATCCTC-GACTTAAGCATCCCACCCCTCTAACCGGCTGAGCACCCGC
*
15244908 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAACATAC
128 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAACATAC
* *
15244965 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGC
1 GGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGC
15245014 CCATGCTGGG
Statistics
Matches: 197, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
184 4 0.02
185 193 0.98
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACATA
GAGAGGGACCCAACCGATCCTCGACTTAAGCATCCCACCCCTCTAACCGGCTGAGCACCCGCACG
CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAACATAC
Found at i:15247471 original size:26 final size:26
Alignment explanation
Indices: 15247435--15247485 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15247425 TTGGCTTAGG
*
15247435 CATACGGAGTTCATTCCCAATCTAAA
1 CATACGGAGTTCATTCACAATCTAAA
*
15247461 CATACGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATTCACAATCTAA
15247486 GATCAGGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAATCTAAA
Found at i:15248488 original size:26 final size:26
Alignment explanation
Indices: 15248452--15248505 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15248442 TGGGTTGACT
15248452 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
15248478 TAGGGATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15248504 TA
1 TA
15248506 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:15249226 original size:26 final size:26
Alignment explanation
Indices: 15249196--15249246 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15249186 GTTGGCTTAG
15249196 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15249222 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
15249247 GGATTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15249902 original size:751 final size:740
Alignment explanation
Indices: 15248431--15249857 Score: 2054
Period size: 751 Copynumber: 1.9 Consensus size: 740
15248421 AGCGCCCGCA
* * * * *
15248431 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGGATACGGAGTTCAT
1 CGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
15248496 TCCCAGTCTAAGATCAGATCAGATCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGAATGTGTTG
66 TCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTAGAGAATGTGCTG
* *
15248561 GTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGACAACATTGGGGTTCTG
131 GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACATGACCGACAACATTGGGGTTCTG
* * ** *
15248626 GCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTAT
196 ACGATCGGGGGGGCCAGGGGCTGTGCGCACATGATGTGCAATGGGGGCTGGTACTTGGCCCTTAT
*
15248691 ATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTAT
261 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTAT
*
15248756 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
326 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAA
*
15248821 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
391 AATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
15248886 CGTCTACCAAGTTTGGGACAAAAACTCCTTCTAAAAAAATTAAAAAAAATCTTGAACCGCAAAAC
456 CGTCTACCAAGTTTGGGACAAAAACTCCTTCCAAAAAAATTAAAAAAAATCTCGAACCGCAAAAC
* * *
15248951 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAA
521 GTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15249016 GGGACCATTATATGAATTTACAAGCCATAAAAATGGCACTGGCACAGAGAAATATGATGATGTGC
586 GGGACCATTATATGAATTTACAAGCCATAAAAATGGCACTGGCACAGAGAAATATGAAGATGTGC
* * * ** * *
15249081 CTAAACCTACCTACCAGCCTATCGATCTACGACTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTG
651 CTAAACCCACCTACCACCCTATCGATCTACGACTTGCGCATACCGTCTCTCCCGCACGCGTA-CG
15249146 CCCGCCCGCCCACCCGCCTGCTCGTC
715 CCCGCCCGCCCACCCGCCTGCTCGTC
*
15249172 CGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * * *
15249237 TCCCAGTCTAGGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTAGAGCATGTGCTG
66 TCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTAGAGAATGTGCTG
*** * **
15249302 GTGCCGCATTTTTCTTCGTTGGGGCACCATCCCCAGAGCATCGTCGAAGAACATGACCGGCGGCA
131 GTGCCGCATTTTTCTTCACCGGGGCACCAT---C---GC--CG--G-AGAACATGACCGACAACA
* *
15249367 TTGGTGTTCTGATGATC-GGGGGGCC-GGGGACTGTGCGCACATGATGTGCAATGGGGGCTGGTA
185 TTGGGGTTCTGACGATCGGGGGGGCCAGGGG-CTGTGCGCACATGATGTGCAATGGGGGCTGGTA
*
15249430 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
249 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGC
* *
15249495 ATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTC
314 ATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTC
*
15249560 AAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTTAATTTTTTTGTGCCA-GCCAA-AAA
379 AAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTG-CATGCCAACAAA
* * * * * **
15249623 AATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAATAAATTTTAAAAAATCT
443 AATACAAGGATCACGTCTACCAAGTTTGGGACAAAAACTCCTTCCAAAAAAATTAAAAAAAATCT
* * * *
15249688 CGAACCGCAAAATGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCA
508 CGAACCGCAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCA
* * * *
15249753 TGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GCAGAA
573 CGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCACTGGCACAG-AGAA
*
15249817 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATC
637 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
15249858 CCGTCTCTCT
Statistics
Matches: 607, Mismatches: 65, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
741 137 0.23
744 1 0.00
747 2 0.00
749 3 0.00
750 216 0.36
751 218 0.36
752 30 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (740 bp):
CGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCACATGCTAGGCTAGAGAATGTGCTG
GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACATGACCGACAACATTGGGGTTCTG
ACGATCGGGGGGGCCAGGGGCTGTGCGCACATGATGTGCAATGGGGGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTAT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGACAAAAACTCCTTCCAAAAAAATTAAAAAAAATCTCGAACCGCAAAAC
GTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTATATGAATTTACAAGCCATAAAAATGGCACTGGCACAGAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCTACGACTTGCGCATACCGTCTCTCCCGCACGCGTACGC
CCGCCCGCCCACCCGCCTGCTCGTC
Found at i:15250121 original size:26 final size:26
Alignment explanation
Indices: 15250085--15250137 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15250075 GTTGACTTAG
15250085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15250111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15250137 G
1 G
15250138 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15253190 original size:26 final size:26
Alignment explanation
Indices: 15253154--15253206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15253144 GTTGACTTAG
15253154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15253180 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15253206 G
1 G
15253207 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15253767 original size:878 final size:875
Alignment explanation
Indices: 15252279--15256023 Score: 3795
Period size: 874 Copynumber: 4.2 Consensus size: 875
15252269 ATTCATACGA
** * * * * *
15252279 AGTTCATTCATAGTCTAAGATCGGACCGGACCAAGGGTTTCGGCAGCACCTGCTGGGCTCGGGTA
1 AGTTCATTCCCAGTCTAAGATTGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * *
15252344 TGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGTACCATCGTCGGAGCATCATCGGAGAACCTGAC
65 TGCGCTGGTGCCGCATTTTTCTTCAT-CGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGAC
* ** *
15252408 CGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGAGGAAG-GCTGCGCACATGATTTGCGATG
129 CGTCGGCATTAGGGTTCCGACGATCGGGGGGGCCGG-GGGCGTG-TGCGCACATGATGTGCGA--
15252472 GGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
190 -GTGC-GGT---TGG--C---TATTGG----CTA---C-CAT---A--T-GAGAACTCACACCCC
* * *
15252537 CTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAAGGA
231 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
* *
15252602 CACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGCGTCTTTAGCTGAATTTTTTTATGCAT
296 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTTTAGCTGAATTTTTTTGTGCAT
* *
15252667 GCCAAAAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
361 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
*
15252732 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTAACAT
426 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTAACAT
*
15252797 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
491 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
15252862 ACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACATCC
556 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
* *
15252927 CGTCTCTCTGGCCGGTGTAGTTCCTGCCCACCCGCCCGTTCACCATCTCATTTCATTGGTTGGCT
621 CGTCTCTCTGGCCGGTGTAG-TCCTGCCCACCCGCCCG--C-CC-TCTCATTTCGTCGGTTGGCT
* * * * * *
15252992 TAGGCATACGAAGTTCGTTGCCAGTCTAAGATCAGACCAGACTGAGGGTTGAGGGAGCAGGATTG
681 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCG
* * * * * * * *
15253057 GCAGCATGTAGAGGGGGACCTGGCCGA-CCCCAGGCTTGTGCATCTCGCCCCTCTGG-CTGGCTG
746 ACAGCACGCAGAGGGGGACCCGGTCGATCCCC-GGCTTGCGCATCCCACCCCTCTGGTC-GGCTG
15253120 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
809 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
15253185 TGG
874 -GG
* * *
15253188 AGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGTACATGCTGGGCTC-GACA
1 AGTTCATTCCCAGTCTAAGATTGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** *
15253252 TGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCGTCGGAGCATCGTCGAAAAACCTGACC
65 TGCGCTGGTGCCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGACC
* * * *
15253317 GTCGACATTGGGGTTCCGACGATCGGGGGGGCC-AGGGCATGTGCGCACATGATGTGCGA-TG-G
130 GTCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGTGCGAGTGCG
*
15253379 G-T-G-T-TT-G-TA-C-T-TGAGAACTCACACTCCCCTTAAAGAGCATTTGAGATTTTACAAGT
195 GTTGGCTATTGGCTACCATATGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15253435 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGTCACAAAATCTT
259 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
15253500 GTACACTTCGCGTCTTTAGCTGAATTTTTTTTTTTTTTGTGCATGCCAACAAAAATATAAAGATC
324 GTACACTTCGCGTCTTTAGCTGAA-------TTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
** * *
15253565 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAACTCCCGAACTGTAAA
382 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA-TCCCAAACCGTAAA
* *
15253630 AAGTTTTAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTT
446 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTT
15253695 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
511 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * *
15253760 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGTCGGTGTAG
576 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAG
* *** * * * * *
15253825 TGCTTGCCTGTCCGCCC-ACCTGCTCATTTCGTTGCTTGGCTTGGGCATACGAAGTTCGTTCCCA
641 T-CCTGCCCACCCGCCCGCCCT-CTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* * * ** * * * * **
15253889 GTCTGAGATCAAACCAGA-TCGAGGGTTGCGATAGCAGGATCGACAGCATGCAAAGGGGAACTTG
704 GTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCCG
* * * * * *
15253953 GTCGA-CCCAGGGCTTGTGTATCCCACCCCTCTAGCCGGCTGAGCGCCTGCACGCCCGTTTCGTG
768 GTCGATCCC-CGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTG
* * * *
15254017 GGTTGACTTAGGCATACAGAATTCATTCCTAGTCTAAGCATACGA
832 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GG
* * *
15254062 AGTTCATTCCCAGTATAAGATTGGACCGGACTGAGGGTGGCGACAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCGGAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * *
15254127 TGTGCTGGTGCCACATTTTTTTTCATCGGGCCACCATCGCCAGAACATCACCGGAGAACCTGACC
65 TGCGCTGGTGCCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGACC
15254192 GTCGGCATTAGGGTTCCGACGATCGGGGGGGCCTGGGGG-GTGTGCGCACATGATGTGCGATGGG
130 GTCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGCGTGTGCGCACATGATGTGCGA---G
*
15254256 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTGAGAACTCACTCCCCCTT
191 TGC-GG---TTGG--C---TATTGG----CTA---C-CAT---A--TGAGAACTCACACCCCCTT
* * * *
15254321 AAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAATGTCTGAAATGGGGACAC
234 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
* *
15254386 TTTTTTCAAATGATCACAAAATCTTGTACACTTCGAC-TTTTTAGCTGAATTTTTTTGTGCATGC
299 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-CGTCTTTAGCTGAATTTTTTTGTGCATGC
* * * *
15254450 CAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAA
363 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
* * **
15254515 AAAATCCAAAACCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
428 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTAACATGA
* ** *
15254580 AACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATATCATTGGCAT
493 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
15254645 GCAGAAATCTGAAGATGTGCCTAAACCGATCTACCACCCTATCGATCCACAGCTTGCACATCCCG
558 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
* * * *
15254710 TCTCTTTGGCCGGCGTAG---TG----CCCGCCCGCCCTCTCGTTCCGTCGGTTGGCTTAGGCAT
623 TCTCTCTGGCCGGTGTAGTCCTGCCCACCCGCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCAT
* * * ** * * * *
15254768 ACGGAGTTCATTTCCAGTCTAAGGTTGGACCAGACCGAGGGTTGTGGCAACAAGATCGGCAGTAC
688 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACAGCAC
* * * * *
15254833 GTAGAAGGGGACCCGATTGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGC
753 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCTGC
* * *
15254898 ACGCTCTTTTTGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A-G
818 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGG
* ** * *
15254950 A--TCA----GA-TC----A---GA-C---CGAGGGTTATGGCAGCACATACTGGGCACGGGCAT
1 AGTTCATTCCCAGTCTAAGATTGGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
15254997 GCGCTGGTG-CGCATTTTTCTTCACCGGGTCACCATCGCCGGAGCATCACCGGACAACCTGACCG
66 GCGCTGGTGCCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGACCG
* * * * * * * *
15255061 ACGGTATTAGGTTTCAGGCGATCGAGGGGCCGACCGGGGGGGCGTGTGCGTACATGATATGCGAT
131 TCGGCATTAGGGTTCCGACGATCG-GGGG--GGCC--GGGGGCGTGTGCGCACATGATGTGCGA-
*
15255126 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
190 --GTGC-GG---TTGG--C---TATTGG----CTA---C-CAT---A--T-GAGAACTCACACCC
* *
15255191 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
230 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
* * *
15255256 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCA
295 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTTTAGCTGAATTTTTTTGTGCA
* ** * *
15255321 TGCCAAAAAAAATACAAGGATCACATCTAGTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
360 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
** * * * * * **
15255386 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGACTCATGTTGCCA
425 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTAACA
* *
15255450 TGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGG
490 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
15255515 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCCTGCGCATC
555 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
* * * * * *
15255580 CCATCTCTCTGGTCGGTGTAATACCCGCCCACCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
620 CCGTCTCTCTGGCCGGTGTAGT-CCTGCCCACCCGCCCGCCCTCTCATTTCGTCGGTTGGCTTAG
** * * * * *
15255645 GTGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGGCAACAGGATCGATA
684 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACA
* * * * * * *
15255710 GCACACAGAGGGGGACCCAGTCGATCCCCGTCTTGCGCTTCCCGCCCCTCTGGTCGACTGAGCAC
749 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGC
* * ** * *
15255775 CGGCACGCTTGTTTTATGGGTTGATTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGGG
814 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GG
*
15255838 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * * * * * *
15255903 TG-TCTGGTGCCAATATTTTTCTCCACCGGGGCACCAT-GACGCAGCATCATCGG--AACCTGA-
65 TGCGCTGGTGCC-GCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGAC
* * *
15255963 CG-CGGTTCAATT-GGGGTCTGTACGATC-GGGGGGCCGAGGGG-G-GTGCACACATGATGTGCG
129 CGTCGG--C-ATTAGGGTTCCG-ACGATCGGGGGGGCCG-GGGGCGTGTGCGCACATGATGTGCG
15256023 A
189 A
15256024 TGGGTGCNNN
Statistics
Matches: 2416, Mismatches: 312, Indels: 226
0.82 0.11 0.08
Matches are distributed among these distances:
868 67 0.03
869 52 0.02
870 116 0.05
871 3 0.00
872 5 0.00
873 230 0.10
874 465 0.19
875 87 0.04
876 21 0.01
877 85 0.04
878 210 0.09
880 2 0.00
881 182 0.08
882 5 0.00
885 1 0.00
886 5 0.00
887 2 0.00
888 5 0.00
889 1 0.00
890 4 0.00
891 1 0.00
893 1 0.00
894 3 0.00
895 167 0.07
896 7 0.00
899 19 0.01
900 6 0.00
901 4 0.00
902 7 0.00
903 191 0.08
904 83 0.03
905 13 0.01
906 34 0.01
907 47 0.02
908 110 0.05
909 52 0.02
911 110 0.05
912 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
AGTTCATTCCCAGTCTAAGATTGGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GCGCTGGTGCCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCACCGGAAAACCTGACCG
TCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGCGTGTGCGCACATGATGTGCGAGTGCGG
TTGGCTATTGGCTACCATATGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGCGTCTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGTCCTGCCCAC
CCGCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACCAGACTGAGGGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGC
TTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATAGG
Found at i:15254067 original size:26 final size:26
Alignment explanation
Indices: 15254028--15254080 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15254018 GTTGACTTAG
* *
15254028 GCATACAGAATTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTATAA
15254054 GCATAC-GAAGTTCATTCCCAGTATAA
1 GCATACAGAA-TTCATTCCCAGTATAA
15254080 G
1 G
15254081 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTATAA
Found at i:15254667 original size:903 final size:890
Alignment explanation
Indices: 15253390--15256030 Score: 3159
Period size: 873 Copynumber: 3.0 Consensus size: 890
15253380 TGTTTGTACT
*
15253390 TGAGAACTCACACTCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
1 TGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15253455 AGTGTCTGAAATAGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCG-CGTCTTTAG
65 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAC-TTTTTAG
* * *
15253519 CTGAATTTTTTTTTTTTTTGTGCATGCCAACAAAAATATAAAGATCACGTCTACCAAGTTTGGGG
129 CTGAA-------TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGG
* * * * * *
15253584 CCAAAAATCCTTCTGAAAAAATTTTAAAAAACTCCCGAACTGTAAAAAGTTTTAAAAATGGTGAA
187 CCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCCAGAACCGTAAAAAGTTTCAAAAATCGTGAA
**
15253649 AAATAGAAAACGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
251 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
**
15253714 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
316 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
15253779 CCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGTCGGTGTAGTGCTTGCCTGTCCGCCCAC
381 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGC--GCC-G-CCGCCC-C
* * * * * * *
15253844 CTGCTCATTTCGTTGCTTGGCTTGGGCATACGAAGTTCGTTCCCAGTCTGAGATCAAACCAGATC
441 CTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
* ** * * ** * *
15253909 GAGGGTTGCGATAGCAGGATCGACAGCATGCAAAGGGGAACTTGGTCGA-CCCAGGGCTTGTGTA
506 GAGGGTTGTGGCAACAGGATCGACAGCACGCAAAGGGG-ACCCGGTCGATCCC-CGGCTTGCGTA
* * * * * * *
15253973 TCCCACCCCTCTAGCCGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAA
569 TCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
*
15254038 TTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATTGGACCGGACTGAGGGTGGC
634 TTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTATAAGA-TGGACCGGACTGAGGGT-GC
*
15254103 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCATCGGGCCACCATCGCC
696 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCGGGCCACCATCGCC
*
15254168 AGAACATCACCGGAGAACCTGACCGTCGGCATTAGGGTTCCGACGATCGGGGGGGCCTGGGGGGT
760 AG-ACATCACCGGAGAACCTGACCG-CGGCATTAGGGTTCAGACGATCGGGGGGGCC-GGGGGGT
*
15254233 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCA
822 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
15254298 AACC
887 AACC
* * *
15254302 TGAGAACTCACTCCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAA
1 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
15254367 ATGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGACTTTTTAGCT
66 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCT
15254432 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTC
131 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTC
* * * *
15254497 CTACCAAAAAAATTTTAAAAAATCCAAAACCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAA
196 CTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
15254562 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCA
261 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** * * *
15254627 TAAAAATATCATTGGCATGCAGAAATCTGAAGATGTGCCTAAACCGATCTACCACCCTATCGATC
326 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
15254692 CACAGCTTGCACATCCCGTCTCTTTGGCCGGCGTAGTGC-CCGCC-CGCCCT-CTCGTTCCGTCG
391 CACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCGCCGCCGCCCCCTGCTCATTTCGTCG
* * ** *
15254754 GTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGGTTGGACCAGACCGAGGGTTGTGGCAAC
456 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAAC
* * * * * * *
15254819 AAGATCGGCAGTACGTAGAAGGGGACCCGATTGATCCCCGGCTTGCGCATCCCACCCCTCTGGTC
521 AGGATCGACAGCACGCA-AAGGGGACCCGGTCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTC
* *
15254884 GGCTGAGCGCCCGCACGCTCTTTTTGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
585 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
15254949 G-AT-C-AG---A-T--CAG-A-CCGA--G---GG--TTA---TG-GCAGCACATACTGGGCACG
650 GCATACGAGTTCATTCCCAGTATAAGATGGACCGGACTGAGGGTGCGCAGCACATGCTGGGCTCG
* * * * * *
15254992 GGCATGCGCTGGTG-CGCATTTTTCTTCACCGGGTCACCATCGCCGGAGCATCACCGGACAACCT
715 GGCATGTGCTGGTGCCACATTTTTTTTCACCGGGCCACCATCGCCAGA-CATCACCGGAGAACCT
* * * * * *
15255056 GACCGACGGTATTAGGTTTCAGGCGATCGAGGGGCCGACCGGGGGGGCGTGTGCGTACATGATAT
779 GACCG-CGGCATTAGGGTTCAGACGATCG-GGGG--GGCC--GGGGG-GTGTGCGCACATGATGT
15255121 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
837 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15255175 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
1 T-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15255240 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAC
65 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGC
* * *
15255305 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAG-TAAGTTTGGGGCCAAAAC
130 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-GCCAAGTTTGGGGCCAAAAC
* * *
15255369 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAA
194 TCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
15255433 AACGACTCATGTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
259 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
15255498 CATAAGAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGA
324 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
15255563 TCCACGGCCTGCGCATCCCATCTCTCTGGTCGGTGTAATACCCGCCCACCCGCCCGCCCGCTCAT
389 TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGT--GCG-CC-GCCGCCC-CCTGCTCAT
* ** * * *
15255628 TTTGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTG
449 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
* * * * * *
15255693 TGGCAACAGGATCGATAGCACACAGAGGGGGACCCAGTCGATCCCCGTCTTGCGCT-TCCCGCCC
514 TGGCAACAGGATCGACAGCACGCA-AAGGGGACCCGGTCGATCCCCGGCTTGCG-TATCCCACCC
* * * * * *
15255757 CTCTGGTCGACTGAGCACCGGCACGCTTGTTTTATGGGTTGATTTAGGCATACGGAGTTCATTCC
577 CTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
15255822 CAATCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
642 CAGTCTAAGCATA-CGAGTTCATTCCCAGTATAAGAT-GGACCGGACTGAGGG-TGC-GCAGCAC
* *
15255887 ATGCTGGGCTCGGGCATGT-CTGGTGCCA-ATATTTTTCTCCACCGGGGCACCAT-GACGCAG-C
703 ATGCTGGGCTCGGGCATGTGCTGGTGCCACAT-TTTTT-TTCACCGGGCCACCATCG-C-CAGAC
* * *
15255948 ATCATC-G-GAACCTGA-CGCGGTTCAATT-GGGGTCTGTACGATC-GGGGGGCCGAGGGGG-GT
764 ATCACCGGAGAACCTGACCGCGG--C-ATTAGGGTTCAG-ACGATCGGGGGGGCCG-GGGGGTGT
*
15256007 GCACACATGATGTGCGATGGGTGC
824 GCGCACATGATGTGCGATGGGTGC
15256031 NNNNNNNNNN
Statistics
Matches: 1469, Mismatches: 204, Indels: 125
0.82 0.11 0.07
Matches are distributed among these distances:
867 1 0.00
868 66 0.04
869 33 0.02
870 1 0.00
871 4 0.00
872 6 0.00
873 227 0.15
874 226 0.15
875 4 0.00
877 4 0.00
878 2 0.00
879 2 0.00
880 3 0.00
881 172 0.12
882 2 0.00
883 2 0.00
884 1 0.00
885 5 0.00
887 1 0.00
888 2 0.00
889 1 0.00
891 5 0.00
893 3 0.00
894 2 0.00
895 157 0.11
896 13 0.01
897 2 0.00
898 2 0.00
899 26 0.02
900 4 0.00
901 5 0.00
902 3 0.00
903 193 0.13
904 83 0.06
905 14 0.01
906 17 0.01
907 35 0.02
908 15 0.01
909 2 0.00
911 110 0.07
912 13 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCGCCGCCGCCCCCTGCTCATTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAAC
AGGATCGACAGCACGCAAAGGGGACCCGGTCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTCG
GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGAGTTCATTCCCAGTATAAGATGGACCGGACTGAGGGTGCGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTTTTCACCGGGCCACCATCGCCAGACATCACCGGAGAACCTGA
CCGCGGCATTAGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
Found at i:15255840 original size:26 final size:26
Alignment explanation
Indices: 15255804--15255856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15255794 GTTGATTTAG
15255804 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
15255830 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15255856 G
1 G
15255857 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15257588 original size:26 final size:26
Alignment explanation
Indices: 15257552--15257604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257542 GTTGACTTAG
* *
15257552 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15257578 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15257604 G
1 G
15257605 ATTGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15258866 original size:880 final size:877
Alignment explanation
Indices: 15257048--15259356 Score: 2575
Period size: 880 Copynumber: 2.6 Consensus size: 877
15257038 TTTTTTGTGC
* *
15257048 TTTT-TGCATGCCAACAAAAAATAGCAAAGGATCACGCTCCACACATGTTTGGGGCCAAAAAATC
1 TTTTATGCATGCCAAC-AAAAATA-C-AAGGATCACG-TCTAC-CAAGTTTGGGGCC-AAAAATC
* * ** * *
15257112 CTGTCCGAAAAAATTTTAAAATAATCCCGAACCGTAAAA-AGTTTTGAAAATTATGAAAAATAAA
60 CT-TCCGAAAAAATTTTAAAA-AATCCTGAACCGCAAAATA-TTTAAAAAATCATGAAAAATAGA
* * * * *
15257176 AAACAAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATAAATTTACAAG
122 AAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
* **
15257241 CCATAAAAATGGCATTGGC-ATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATC
187 CCATAAAAATGACATTGGCTA-GCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATC
* ** * **
15257305 GATCCACGGCTTGCGCATCCCGA-CTCTCTGGCCAGTATAGTGCCCGCCCGCCCGCCCACCCTGC
251 GATCCACGGCTTGCGCATCCC-ATCTCTCTGGCCGGCGTAGTG--C-CCC-CCCGTCCACCCACC
* * * * * * ** * **
15257369 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATTGGACTAGACCG
311 CGCTCATTTCATCGGTTGCCTTAGGCATACAGAGGTCATTCCCAGTCTAAGATCAGACCAGACAA
** * * * * * * * *
15257434 AGGGTTGGGGTAGTC-TGATCGACA-AAACGCAGAGGGGGACCC-G-AACGATCCCTGACTTGCA
376 AGGGTTACGGCAG-CAGGATCGACAGCAA-GCAGAGCGGCACCCAGCAA--ATCCCCGGCTTGCG
** * * * * * * *
15257495 CATCCCATCCCTC-TGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACG
437 CATCCCGCCCCCCGT-GCCGACTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCAGACG
* *
15257559 GAGTTCATTGCCAGTCTAAGCATACAGAGTTTATTCCCAGTCTAAGATTGAATTGGACCGAGGGT
501 GAGTGCATTCCCAGTCTAAG-AT-C--AG---A----C---C---------A---GACCGAGGGT
* *
15257624 TACGGTAGCACATGCTGGGCTCAGACATGTGCTGGTGCTGCATTTTTCTTCACCGGAGCACCATC
540 TACGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATC
* * * ** * * * *
15257689 ACCAGAGCATCGTCGGAGAACCCGACTGGCGTTATTGGGGTTCTGATGATTGGGTGGGCCGGGGG
605 ACCAGAGAATCGTCGGAGAACCCGACCGACGACATTAGGGTTCCGATGATCGGGTGGGCAGGGGG
15257754 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCAT
670 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCAT
15257819 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGC
735 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGC
* * *
15257884 CATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGATTT
800 AATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGCCACAAAATCTTGTACACTTCGAGTT
*
15257949 TTTTGCTGAATTA
865 TTTAGCTGAATTA
*
15257962 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
1 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * * *
15258027 AAAAAATTTTGAAAAATTCTGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
66 AAAAAATTTTAAAAAATCCTGAACCGCAAAATA-TTTAAAAAATCATGAAAAATAGAAAACGAGT
* * ** *
15258091 CCTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATTAGGCATAAAA
130 CCTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15258156 ATGGCATTGGC-AGATAGAAATATGAACTTGTGCCTAAACCCACCTACCACCCTATCGATCCACG
195 ATGACATTGGCTAG-CAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
15258220 GCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCTCGCCC-TGCCACCCACCCGCTCGTTTCGT
259 GCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCCCCCGT-CCACCCACCCGCTCATTTCAT
* ** ** **
15258284 TGGTTGCCTTAGGCATATGGAGGTCATTCCCAGTCTAAGATTGGACCAGACAAAGGGTTGTGGCA
323 CGGTTGCCTTAGGCATACAGAGGTCATTCCCAGTCTAAGATCAGACCAGACAAAGGGTTACGGCA
* * * * * ** *
15258349 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGCAAATCCCCGGCTTGCGCATCCCGCCTTCTG-G
388 GCAGGATCGACAGCAAGCAGAGCGGCACCCAGCAAATCCCCGGCTTGCGCATCCCGCCCCCCGTG
* * * * *
15258413 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-GTACGGAGTGCATTCCCAGTC
453 CCGACTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCAG-ACGGAGTGCATTCCCAGTC
* * ** * *
15258477 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATTCTGGGCTTGGGCATGTGCTGGTGCCGTA
517 TAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGCA
** * *
15258542 TTTTTCTTCACCCGG-GCACCATCGTCGGAGAATCAG-CGGAGAACCTGACCGACGACATTAGGG
582 TTTTTCTTCA-CCGGAGCACCATCACCAGAGAATC-GTCGGAGAACCCGACCGACGACATTAGGG
* **
15258605 TTCCGGTGATCGGG-GGGTCGAGGGGGGCGCTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
645 TTCCGATGATCGGGTGGG-C-AGGGGGG-G-TGTGCGCACATGATGTACGATGGGTGCTGGTACT
* **
15258669 TGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAGAGCAT
706 TGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* * *
15258734 TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
770 TTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTGCAA
*
15258799 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
835 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTA
* *
15258842 TTTTTTGCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC
1 TTTTATGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
15258906 GAAAAAATTTTAAAAAATCCTGAACCGCAAAATATTTAAAAAATCATGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCCTGAACCGCAAAATATTTAAAAAATCATGAAAAATAGAAAACGAGT
* * * *
15258971 CGTCTTGCCATGAAACTTCACGTGGAGGTTTAAAGGACCATTGTATGAATTTGCAAGCCATAAAA
130 CCTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15259036 ATGACATTGGCTTGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGG
195 ATGACATTGGCTAGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
15259101 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCGTCCCCCCGCCCGTTCATTTCATCG
260 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCCCCCGTCCACCCACCCGCTCATTTCATCG
* * * ** * *
15259166 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTAAGGGTTACGGTAGT
325 GTTGCCTTAGGCATACAGAGGTCATTCCCAGTCTAAGATCAGACCAGACAAAGGGTTACGGCAGC
* ** *
15259231 AGGATTGACAGCAAGCAGAGCGGCACCCAGCCGATCCCCGGCTTGCGCATCTCGCCCCCCGTGCC
390 AGGATCGACAGCAAGCAGAGCGGCACCCAGCAAATCCCCGGCTTGCGCATCCCGCCCCCCGTGCC
* * *
15259296 GACTGAGCGCCCGTAAGCTCATTTTATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGT
455 GACTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCAGACGGAGTGCATTCCCAGT
15259357 GAAAGCATAC
Statistics
Matches: 1210, Mismatches: 162, Indels: 79
0.83 0.11 0.05
Matches are distributed among these distances:
875 3 0.00
876 102 0.08
877 11 0.01
878 1 0.00
879 36 0.03
880 539 0.45
881 61 0.05
882 1 0.00
888 1 0.00
891 1 0.00
895 1 0.00
898 2 0.00
900 1 0.00
901 2 0.00
902 64 0.05
903 117 0.10
904 3 0.00
905 3 0.00
906 2 0.00
907 185 0.15
908 17 0.01
909 8 0.01
910 12 0.01
911 4 0.00
912 10 0.01
913 1 0.00
914 11 0.01
915 11 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
AAAAAATTTTAAAAAATCCTGAACCGCAAAATATTTAAAAAATCATGAAAAATAGAAAACGAGTC
CTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
TGACATTGGCTAGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCCCCCGTCCACCCACCCGCTCATTTCATCGG
TTGCCTTAGGCATACAGAGGTCATTCCCAGTCTAAGATCAGACCAGACAAAGGGTTACGGCAGCA
GGATCGACAGCAAGCAGAGCGGCACCCAGCAAATCCCCGGCTTGCGCATCCCGCCCCCCGTGCCG
ACTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCAGACGGAGTGCATTCCCAGTCTAAG
ATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGACATGTGCTGGTGCCGCATTTT
TCTTCACCGGAGCACCATCACCAGAGAATCGTCGGAGAACCCGACCGACGACATTAGGGTTCCGA
TGATCGGGTGGGCAGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGCCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTA
Found at i:15259551 original size:173 final size:173
Alignment explanation
Indices: 15259262--15259584 Score: 477
Period size: 173 Copynumber: 1.9 Consensus size: 173
15259252 GGCACCCAGC
* * * *
15259262 CGATCCCCGGCTTGCGCATCTCGCCCCCCGTGCCGACTGAGCGCCCGTAAGCTCATTTTATGGGT
1 CGATCCCCAGCTTGCGCATCCCGCCCCCCGTGCCGACTAAGCGCCCGCAAGCTCATTTTATGGGT
* *
15259327 TGACTTAGGCAGACGGAGTTCATTCCCAGTGAAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
66 TGACCTAGGCAGACGGAGTTCATTCCCAGTGAAAGCATACAGAGTTCATTCCCAATCTAAGATCA
*
15259392 GACCAGACTGAGGGTTGCGGCAACATGTAGAGGGGGACCCGGT
131 GACCAGACCGAGGGTTGCGGCAACATGTAGAGGGGGACCCGGT
* * * * *
15259435 CGATCCCCAGCTTGCGCATCCCGCCTCTC-TGGCCTACTAAGTGCCCGCACGCTCATTTTATGGG
1 CGATCCCCAGCTTGCGCATCCCGCCCCCCGT-GCCGACTAAGCGCCCGCAAGCTCATTTTATGGG
* ** *
15259499 TTGACCTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACAGAGTTCATTCCCAATCTAAGCTC
65 TTGACCTAGGCAGACGGAGTTCATTCCCAGTGAAAGCATACAGAGTTCATTCCCAATCTAAGATC
*
15259564 AGACCGGACCGAGGGTTGCGG
130 AGACCAGACCGAGGGTTGCGG
15259585 GAGCACATGC
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
172 1 0.01
173 131 0.99
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (173 bp):
CGATCCCCAGCTTGCGCATCCCGCCCCCCGTGCCGACTAAGCGCCCGCAAGCTCATTTTATGGGT
TGACCTAGGCAGACGGAGTTCATTCCCAGTGAAAGCATACAGAGTTCATTCCCAATCTAAGATCA
GACCAGACCGAGGGTTGCGGCAACATGTAGAGGGGGACCCGGT
Found at i:15259560 original size:26 final size:26
Alignment explanation
Indices: 15259508--15259561 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15259498 GTTGACCTAG
* * *
15259508 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15259534 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15259560 GC
1 GC
15259562 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15260442 original size:26 final size:26
Alignment explanation
Indices: 15260406--15260458 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15260396 GTTGACTTAG
15260406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15260432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15260458 G
1 G
15260459 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15260628 original size:26 final size:26
Alignment explanation
Indices: 15260592--15260642 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15260582 TGACTTAGGT
*
15260592 ATACGGAGTTCACTCCCAGTCTAAGC
1 ATACGCAGTTCACTCCCAGTCTAAGC
* *
15260618 ATACGCAGTTCATTCCCAGTTTAAG
1 ATACGCAGTTCACTCCCAGTCTAAG
15260643 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGCAGTTCACTCCCAGTCTAAGC
Found at i:15260645 original size:184 final size:186
Alignment explanation
Indices: 15260247--15260662 Score: 547
Period size: 185 Copynumber: 2.3 Consensus size: 186
15260237 GTTGGCTTAG
* * * *
15260247 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAATTAGATCGAGGGTTGCGGTAGCAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACTAGACCGAGGGTTGCGGCAGCAGGATCAGC
* * *
15260311 AGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCA
66 AGCACACAGAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
15260376 CCTGCACGTTCAATTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCTGCACGCTCAATTTGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
* **
15260432 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACTAGACCGAGGGTTGCGGCAGCAGGATCAGC
* * * * * *
15260496 AGCATATAGAGGGGGACCTAG-CCGATCCCCGACTTGTGCATCCCGCCCCTC-GGCCGGTTGAGT
66 AGCACACAGAGGGGGACC-AGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15260559 GCCTGCACGCTC-ATTTCGTGGGTTGACTTAGGTATACGGAGTTCACTCCCAGTCTAA
130 ACCTGCACGCTCAATTT-GTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
* * * * *
15260616 GCATACGCAGTTCATTCCCAGTTTAAGATC-GGACCAGATCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACTAGACCGAGGGTT
15260663 ACAGCAACAC
Statistics
Matches: 202, Mismatches: 25, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
183 5 0.02
184 97 0.48
185 98 0.49
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (186 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACTAGACCGAGGGTTGCGGCAGCAGGATCAGC
AGCACACAGAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
CCTGCACGCTCAATTTGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
Found at i:15261524 original size:26 final size:26
Alignment explanation
Indices: 15261488--15261546 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
15261478 GTTGACTTAG
*
15261488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15261514 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15261540 -CAT-CAGA
1 GCATACAGA
15261547 TCGGACCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15262410 original size:26 final size:26
Alignment explanation
Indices: 15262381--15262433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15262371 GTTGACTTAG
* *
15262381 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
*
15262407 GCATACGGAGTTGATTCCCAGTTTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
15262433 G
1 G
15262434 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTGATTCCCAGTCTAA
Found at i:15262652 original size:13 final size:12
Alignment explanation
Indices: 15262617--15262648 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15262607 GTGCTGGTAC
*
15262617 TTGGCCCTTATA
1 TTGGCCCCTATA
15262629 TTGGCCCCTATA
1 TTGGCCCCTATA
15262641 TTGGCCCC
1 TTGGCCCC
15262649 CTATCCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:15263045 original size:906 final size:889
Alignment explanation
Indices: 15260518--15277599 Score: 19544
Period size: 901 Copynumber: 19.1 Consensus size: 889
15260508 GGGACCTAGC
* * * * * *
15260518 CGATCCCCGACTTGTGCATCCCGCCCCTC-GGCCGGTTGAGTGCCTGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
15260582 TGACTTAGGTATACGGAGTTCACTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTTTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
15260647 GACCAGATCGAGGGTTACAGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
15260712 CATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
15260777 CGGGGGTGCCGGTGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATAT
261 CGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
15260842 TGGCCCCCTATCCCTCATCAAACTTTGAGAACT-AGCACCCCCTTAAAGAGCATTTGAGATTTTA
323 TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15260906 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATGGGGACACTTTTTTCAAATCGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
15260971 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAGGGATCAT
451 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * **
15261036 GTCTACCATGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAACTTGAACCGTAAAAAG
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
15261101 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAG
581 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
** * * * *
15261166 AAACGATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
646 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
15261231 AAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGACGTAGTGC
711 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * *
15261296 CCG--C-CCAC-CC-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
776 CCGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATG
* * * * * *
15261356 ATCGGGCCAAACTGAGGGTTACGGTAGCAGGATCG-A-CAGCTCGCAAAGGGGGACCCGAC
841 AT-----CAAAC-CA--G--ACGGCAGC-GGAT-GTATGAGCACGCAGAGGGGGACCCGAT
* * * * *
15261415 CGATCCCCGACTAGCGCATCCCGTCACTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
15261480 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAACATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * ** *
15261545 GATCGGACCGAAGGTTGCGACAGCACATGCTAGGCTTAGGCATGTGCTGGTGCCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* ** ** * *
15261610 CGTCGGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACCGGTGGAATTAGGGTTCCGACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * **
15261675 CGGGGGGGCC-GGGGGTGTGCGCACACGATGTGCAATGGGTGCTTATACTTGGCCCTTATATTGG
261 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
15261739 CCCCCTATCCCTCATCAAACCTCTAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
326 -CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
15261804 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTG-CACTTTTTTGAAATAGTCACAAAATC
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-GACACTTTTTTCAAATGGTCACAAAATC
*
15261868 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
15261933 TACTAATTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
15261998 TAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
15262063 CCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAG-AATATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
15262127 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCAACATAGTGCCCG
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G
* * *
15262192 CCCGCCCGCCTGCCGCCTGCCCGTTCGTTTCGCCGGTTGGCTTAGGCATATGGAGTTCATTCTCA
775 CCCGCCCGCCT--CGCCTG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
15262257 GTCTATGAGCAAACTAGACGG-A-CGG-T-TATG-GCACGCAGAGGGGGACCCGGT
834 GTCTATGATCAAACCAGACGGCAGCGGATGTATGAGCACGCAGAGGGGGACCCGAT
* * *
15262308 CGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
15262373 TGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTTTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * * * * *
15262438 GATCGGGCCAAGGGTTGCGGCTGCACATGCAGGTCTCGGGCATCTACTGGTGTCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
15262503 CGTCGGGGCACTATCGCAGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCTGGCGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
15262568 C-GGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTG
261 CGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
15262632 GCCCCTATATTGGCCCCCTATCCTTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
325 GCCCC--TA-T----CCC--T-C---ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
15262697 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
377 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
15262762 GGTCACAAAATCTTTTACATTTCGTGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATAC
442 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
15262827 GAGGATCACGTCTACCAAGTTTGGGGCCTAAACTCCTTCTGAAAAAATTTT-AAAAATCTCGAAC
507 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* ** ** *
15262891 CGTAAACAGTTTTGAAAATTTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGA
572 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
15262956 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGACAAGCAGAAACATGA
637 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
15263021 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCG
702 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
15263086 GCGTAGT----GCCCG---C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTTC
767 ACGTAGTGCCCGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
15263141 CAGTCTAAGATCAGACCGGAATGGGGGCTGCAGCAGCAGGAT-T-GGTAGCATGCAGAGGGGGAC
832 CAGTCTATGATCAAACC---A----GAC-G--GCAGC-GGATGTATG-AGCACGCAGAGGGGGAC
*
15263204 CCGAC
885 CCGAT
* * * * *
15263209 CGATCCCCGGCTTGCGCATCCCGCCCCTCAGGCCGCCTGAGTGCCCACACACTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* ** *
15263274 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-AAATGTTCATTCCCAGTGTAAGATC
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATC
** * * *
15263338 AAACCCA-ACCGAGGGTTGCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
130 GGA-CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
15263402 TTCGTCGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGTATTGGGGTTCCGACG
194 TTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
15263456 ATCGGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATT
259 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15263521 GGCCACCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTGCA
324 GGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15263586 GGTTTGCTGGCAATAG-CATTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
388 GGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
15263650 TCTTGTACACTTCGGGTTTTTAGCTGATTTTTTTTGTGCTTGCCAAGAAAAATACAAGGATCACG
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
15263715 TCCACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
15263780 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * *
15263845 GACCATTGTATGAATTTACATGCCATAAAAATGTCATTGCCACGCAGAAATATGAAGATGTACCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* **
15263910 AAACCCACCTACCACCCTATCGATACACGGCTTGCTTATCCTC-TCTCTCTGGCCGACGTAGT--
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTCTGGCCGACGTAGTGC
* * * * * * *
15263972 --GCCCG---C-CC-GCTCGTTTCATCGGTTGGGTTTGGCATACGAAGCTCGTTCCTAGTCTAAT
776 CCGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AT
*** * * * * * **
15264030 -ATCGGGCCGAATTGACGGTTACGGCGGCAAG-ATCGACAGCACGTAGAGGGTGACTCGGC
840 GATCAAACC--A--GACGG---CAGCGG-ATGTAT-G--AGCACGCAGAGGGGGACCCGAT
* * *** * * * *
15264089 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAATTACCCACATGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
15264154 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG---------A--C------CG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
15264198 GACC--A---AGGGTTACGGCAGCACACGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * **
15264258 CGTGGGGGCACCATCACCGGAGCATTGCCGGAGAACCTGACCGATGGCATTGGGGTTCCGGTGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * *
15264323 CGGGGTGGCCGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGACTTTATATTGG
261 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * *
15264388 CCCCCTCTCCCTCATCAAATCTCCAGAACTTAGACCCCCTTAAAGAGCATTTGAGATTTTACAGG
326 -CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
15264453 TTTGCTGCCAGTAGCCATTAAAGTGT-TAGAAATGGGGACACTTTATTT-GAATGGCCACAAAAT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTT-TTTCAAATGGTCACAAAAT
* * *
15264516 ATTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
15264581 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * * *
15264646 TCAAAAATCAAGAAAAATAGAAAACGAGTCATCTTGCCATGAACCTTCACGCGAAGTCTTAAAGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*** *
15264711 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCTTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
15264776 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGACGTAATGCTC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
15264841 GCCCGCCTGGCCGCCCGTTCGTTTCGTCGGTCGGCTTAGGCGTACGGAGTTCATT-CCAGTCTAA
778 GCCCGCCT---CGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT--
* * * * * * *
15264905 GATTGGACCATACC-GAGGGCTGCAGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGAC
838 -A-T-GATCAAACCAGACGGCAGC-GGA-T-GTA-T-G-AGCACGCAGAGGGGGACCCGAT
* * * *
15264965 CGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
15265030 TAACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATTG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
15265095 GACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGATGGTGCTGCATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
15265160 CGTCGGGGCATCATCGCCGGAGCATCGTCGGAGAACCTGACCGACAGCGTTGGGGTTCCGACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
15265225 C-GGGGGGCTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
261 CGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * *
15265289 GCCTGCTATCCCTCATCCAACCTTGAGAACTCACACCTCCTTAAAGAACATTTGAGATTTTACAG
325 GCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
15265354 GCTTGCTTCCAGTAGCCATTCAAGTGTATGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15265419 TTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
15265484 TAACAAGTTTGGGGTCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * * *
15265549 GAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAAGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
15265614 CCATTGTATGAATTTACATGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTACCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * * *
15265679 ACCCACCTATCACCCTATCGATCCACGGCCTGCGCATCTCGTCTCTTTGGTCGACATAGTGCCAA
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--
* * * *
15265744 ACCGCCCGCC-CGCCCACCTGCTCTTTTCGTCGGTTGGGTTAGGCATACAGAGTTTATTCCCAGT
776 -CCGCCCGCCTCG----CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
15265808 CTAAGATCGGACTGGACCGAGGGTACCGGCAGCAGGAT-CA-GCAACACGCAGGGGGGGACTCGA
836 CTATGATC--A---AACC-A--G-A-CGGCAGC-GGATGTATG-AGCACGCAGAGGGGGACCCGA
15265871 T
889 T
* * * * * * *
15265872 CGATCCCCGACTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCGACCGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * **
15265937 TGACTTAGCCATACGGAGTTCATTCCCTGTCTAAGCTTACAAAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
15266002 AACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
15266067 CATCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTG-CC-AGCAGCATTGAGGTTCCGATGA
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGA
* *
15266130 TCGGGGGGGCCAGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15266195 GCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
325 G-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
15266260 GTTTGCTGCCAGTAGCCATTAAAGTGTTTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
15266325 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
15266390 TACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
15266455 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
15266520 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAATTATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
15266585 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGGCATAGTCCCCA
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-----
* * * * *
15266650 CCCGCCCGCCCGCC-CGCCTGCTCGTCTCATCGGTTGGCTTAGGCATATGGAATTTATTCCCAGT
774 ---GCCCGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
15266714 CTATGATCGAACCAGACTGATGGTTGCAGCAGCAAG-ATCAGCAACACGCAGAGAGGGACCCGAT
836 CTATGATCAAACCAGAC-----G--GCAGC-GGATGTAT--G-AGCACGCAGAGGGGGACCCGAT
* * * *
15266778 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCTTCCC-CACGCTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGG
* * *
15266842 TTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGTGTTCATTCCCAGTCTAAGAT-
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
15266906 TG----GACCGA----T-----AGCACATGCTAGGCTCGAGCATGTGCTAGTGCCGTATTTTTCT
130 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
15266958 TC-ACTGGGGCACCATC-CTCGGAGCAACGCCGGAGAACTTGACCGGCGGCATTGGGGTTCTGAC
195 TCGTC-GGGGCACCATCGC-CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
15267021 GATCGGGGGGGTCGGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATAT
258 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
15267086 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
323 TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
15267151 AGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* ** ** *
15267216 TCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCACACCAACAAAAATGTAAGGATCACA
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** *
15267281 TCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
15267346 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * *
15267411 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAAAAATATAAAGAAGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * *
15267476 AAACCCACCTACCACCCTATGGATCCACGGCTTGCGCATCCCATCTCTATGGCCGGCGTAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * *
15267541 CGCCCTCTCGCCT-GCCCGCTCGTTTCGTCGATTGGC-TAGGCATATGAAGTTCTTTCCCAGTCT
777 CG--C-C-CGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * ** * * * * * *
15267604 ATGATCCGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACGCAAC
838 ATGATCAAACC--A--GACGGCAGCGG-A--TGTAT-G--AGCACGCAGAGGGGGACCCGAT
* * * * * *
15267666 CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGGCGGTTGAGTGCCCGTACGATCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
15267731 TGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCACATGGAGTTCATTCCCAGTCTAAAATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
15267796 GACCAGACCGAGGGTTGTGGCAGTAGATGCTGGGCTCGCGCATGTGCTGGTGCCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * ** **
15267861 CGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACTTGGTCGGGGGCATTGGGGTTCCGACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
15267926 C-GGGGGGCCGGGGGGTGTGCACATATGATGTTG-GATGTGTGCTGGTACTTGGCCCTTATATTG
261 CGGGGGGGCCGGGGGGTGTGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15267989 GCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
325 G-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
15268054 GTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15268119 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACATGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
15268184 TACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * * *
15268249 CAAAAATCATGAAAAATAAAAAACGAGTTGT-TTTCTCATGAAACTTCACGTGAAAGCTTAAAGG
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTTCACGTGAAGGCTTAAGGG
* ** * *
15268313 ACCATTGTATGAATTTACATGCCATAAAAATTACATTGCCATGCAGAAATATGAAGATGTACCTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* ** ** * *
15268378 AACCCACCTACCACCCTATCGGTATACGGCTTGCTTATCCCGTCTCTCCGGTCGACGTAGTGCCC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * *
15268443 GCCC-ACTCGCCCGTCCGCTCGTTTCGTCGGTTGGGTTTGGCATACGGAGTTCATTCCCAGTCTA
778 GCCCGCCTCG-CC-T--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *** * * * *
15268507 AGATCGGGCCAGACTGAG-GGTTACGGCAGTAGGATCTGTAGCACGCAGAGGGGGACTCG-G
839 TGATCAAACCAGAC-G-GCAG---CGG-A-T--G-TATG-AGCACGCAGAGGGGGACCCGAT
* * *
15268567 CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTATGCTCATTTCGTGGG
1 C-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
**
15268632 TTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
15268696 GGACTAGACCGAGGGTTACGGCAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTCT
130 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
15268761 TCGTCGGGGCACCATCACCGGATCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
195 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
15268826 TCGGGGTGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATGTTG
260 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15268891 GCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGA-TTTACAG
325 G-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
15268955 GTTTGCTGCCACTAGCCATTAAAGTGCCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
15269020 TTGTACAC-TCTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
454 TTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * *
15269084 CTACCAAGTTTGGGGCAAAAACTCTTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
15269149 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAACCTTCACGTGAAGTCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*** *
15269214 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAGAAATATGAAGAAGTGCCTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
*
15269279 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * *
15269344 GCCCGCCTGCCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGCCTAA
778 GCCCGCCT--C-GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAT
** * ** * * * *
15269408 GATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGT
840 GATCAAACC--A--GACGGCAGCGG-A-T-GTAT--G-AGCACGCAGAGGGGGACCCGAT
* * *
15269468 CGATCCCCGGCTTGAGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
15269533 TGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAAATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * ** *
15269598 GACCAAATCGAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGCACTGGTGCCACATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** **
15269663 CGTC-GGG-------G-C--AGCATCGTCAGAGAACCTGACCGACAACATTGGGGTTCTAACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
15269717 CAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATT
261 CGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15269782 GGCCTCCTATTCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACA
324 GGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
15269847 GGTTTGCTGCCAGTAGCCATTCAAGTGTATGAAATGGGGACAGTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15269912 CTTGTTCACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
453 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
15269977 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTTAAAAAGT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGT
** * *
15270042 TTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
15270107 AACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * **
15270172 AAACCCACCTATCACCCTATCGATCCACGGCTTCCGCATCTTGTCTCTCTGGCCGACGTAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * *
15270237 CGCCCGCCT-GCCTGCTCGTTTCGTCGATTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
777 CGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA
* * * *
15270301 TCGGACTGGACCAAGGGTACTGGCAGCAGGAT-CA-GCAACACGCAG-GGGGGACTCGAT
842 TC--A---AACC-A--G-AC-GGCAGC-GGATGTATG-AGCACGCAGAGGGGGACCCGAT
* * * * *
15270358 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGTGCCCGCACGCTCATTTCCTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
15270423 TGACTTGGGCATACGGCGTTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * ** *
15270488 GACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGACATGCGCTAGG-GCCATATTTTACT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCT
* * * * * * *
15270552 TCGTCGGGACAGCATCGCCGGAGCATCGCCGAAGAACTTGACCGACAGCATTGGTGTTCCGATGA
195 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
15270617 TCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTAGCCCTTATATTG
260 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15270682 GCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACTTTTGAGATTTTACAG
325 GCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * * *
15270747 GCTTGCTGCTAGTAGCCATTCAAGTGTATGAAATGGGGACAGTTTTTTCGAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15270812 TTGTTCACTTTGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACAAAAATACAGGGATCACGT
454 TTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * **
15270876 CTACCAAGTGTGGGGCCAAAACTCCTTTCGAAAAAATTTGAAAAAATCTTGAACCGTAAAAAGTT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
** *
15270941 TCAAAAATCATGAAAAATAGAAAACGAGTCAG-CTTGCCATGAAACTTCAAATGAATGCTTAAGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
15271005 GACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * *
15271070 AAACCTACCTATCACCCTATTGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* *
15271135 CGCCCGCCTGCCTGCTCGCCTGCTCGTTTCATCGGTTGGGTTAGGCATACGGAGTTCATTCCCAG
777 CG--C-CC-G-C--CTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
15271200 TCTAAGATTGAATCAAACCGAGGGTACTGGCAGCAGGATCG-GT-AGCACGCAGAGGGGGACTCG
835 TCT---A-TG-ATCAAACC-A--G-AC-GGCAGC-GGAT-GTATGAGCACGCAGAGGGGGACCCG
*
15271263 GT
888 AT
* * * * * *
15271265 CGATCCTCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
15271330 TGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** ** * * *
15271395 GACCAGATTGAGGGTTAAGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
15271460 CGTCGGGGCACCATCACCAGAGCATCGCTGGAGAACCTGACCAACGGCATTGGGGTTCCGACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
15271525 CGGGGGGGGCGAGGGGGTGTGTGCACATGTTGTGCGAAT-GGTGCTGGTACTTGGCCCTTATATT
261 CGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15271589 GGCCCCGTCTCCATCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
324 GGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15271654 GGTTTGCTGCCAGTAGCGATTAAAGTGTCT-ACAATGGGGACACTTTTTTCAAATGGACACAAAA
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
15271718 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACG
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
15271783 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
15271848 TTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
15271913 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
15271978 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCGGGCCGACATAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * ** *
15272043 CGCCCGTCAGCCCGCCCGTTCGTTTCGTCAATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
777 CGCCCG-C--CTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15272108 TGATCGAATCGGACAGATGGTTGCGGCAGCAAGATCG-A-CAGAACGCAGAGGGGGGCCCGGT
839 TGATC-AAAC---CAGA------CGGCAGC-GGAT-GTATGAGCACGCAGAGGGGGACCCGAT
* * * * * *
15272169 CGATCCCCGGCTTACGTATCCCGCCCCTCTGGCCGACTGAGGGCCCGCACGCTCGTTTCATAGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
15272234 TGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TAC---G---A-T--C-G-----GA-C-
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
15272276 --CGAG-CTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGGCGTATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * * *
15272338 CG-CTGGGGCACCATC-CTCGAAGCAACGCCGGAGAACCTGACCGGTGACATTGGGGTTCTGATG
196 CGTC-GGGGCACCATCGC-CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
** * * *
15272401 ATCGGGGGGTTCGAAGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATAT
259 ATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
15272466 TAGCCCCCTATCCCTCATCAAACCTCCAAAACTCACACCCCCTTAAATAGCATTTGAGATTTTAC
323 T-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
15272531 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
15272596 TCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAAAACAAGGATCACG
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
15272661 TCTACCAAGTTTGGGG-CAAAACTCCTACCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
15272725 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
15272790 GACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * *
15272855 AAACCCACCTACCACCCTATGGATCCACGGCTTGCGTATCACATCTCTCTGGCCAACGTAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * * * * *
15272920 CGCCCTCTCGCCGGCCCGCTCGTTTCATCGATTGGCTTAGGCATATGGAGTTCTTTCCTAGTCTA
777 CGCCCGC-C-TC-GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
15272985 TGATCCAACCGGATGG-AGGGTTGTTGTAGCAGGATCGACAGCACGTAGAGGGGGATCCG-G
839 TGATCAAACCAGACGGCAGCG--GATGT------AT-G--AGCACGCAGAGGGGGACCCGAT
* * * *
15273045 CGAATCGCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGTTCGTTTCGTGGG
1 CG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
15273110 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCACATGGAGCTCATTTCCAGTCTAAAATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
15273175 GGATCAGACCGAGGGTTGCGGCAGCACATGCTAGCCTCGGGCATTTGCTGGTGCCGCATTTTTCT
130 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
15273240 TCGTCGAGGCACCATCGCCAGAGCAACACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGA
195 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
15273305 TCGGGGGGGTCGGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15273370 GCCCCCTATCCCTCATTAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
325 G-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
15273435 GTTTGCTGCCAGTAGCCATTACAGTGTTTAAAATGGGGACACTCTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
15273500 TTGTACACTTCGAGTTTTTGGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * **
15273565 TACGAAGTTTGGGGCCAAAA-TGCCCTT-CGAAAAATTTTTTAAAAATCTTGAACCGTAAAAAGT
519 TACCAAGTTTGGGGCCAAAACT--CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
15273628 TTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
15273693 GACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * ** *
15273758 AAACCCACCTACCACCCTATGGATCCACGGCTGGCGCATCACATCTCTCTGGTTGGCGTAGTGCC
712 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * * * *** ** * *
15273823 CGCCC-TCTCGCCAGCCCG---C-TCGTTTCGC-CA-GCCCGCTCATTTCA-T-CTATGATC--T
777 CGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-G-TCTAT
** ** * * *
15273877 GATCGGACCGAGGGTTGTGGTAGCAGGATCG-A-CAGCATGCAGAGGGGGACCCGAT
840 GATCAAACC-A--G--ACGGCAGC-GGAT-GTATGAGCACGCAGAGGGGGACCCGAT
* ** * * * * *
15273932 CGATCCCCGGCTTGCGCATGCCATCCCTATGTCCGGTTGAGCGCCCGTACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
15273997 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACATGGAGTTCATTCCCAATCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * * *
15274062 GACGGGACAGAGGGTTGCGGCAACACTTGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTGCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
15274127 CGTCGGGGCACCATTGCCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
*
15274192 CGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTG
261 CGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
15274257 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAAAGCATTTGAGATTTTATAG
325 G-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
15274322 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * **
15274386 TTGTACACTTCGACTTTTTAGCTGAATGTTTTTGTGCACACCAACAAAAATACAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * *
15274451 TACCAAGTTTGGGGCCAAAACTCCTTTTGAAGAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
15274516 CAAAAATCGTGAAAAATAGAAAACGAGTC-TCCTTGCCCTGAAACTTCACGTGAAGGCTTTAGGG
584 CAAAAATCATGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
15274580 ACCATTCTATGAATTTACAAGCCATGAAAAGGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
15274645 AACCCACCTACCATCCTATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
15274710 GCCCGCC-CG-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGA
778 GCCCGCCTCGCCT-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA
* * * * * *
15274773 TCAGACCAGACCG-AGGGTTGCAACAGTAGGATCGGTAGCACGTAGAGGGGAACCCGAT
842 TCAAACCAGACGGCAGCG--G----A-T-GTAT--G-AGCACGCAGAGGGGGACCCGAT
* * * * ** * *
15274831 CGATCTCCGGTTTGCGCATCTCGCCCCGCTGGCTAGCTGAGCGCCCGCACACTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
15274896 TGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
*** * *
15274961 GATTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
131 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
15275026 TGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACTTGACCGGCGGCATTGGGGTTCCGATGAT
196 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * *
15275091 CGGGGGGGCCGGGGGGTGTGCGCACATGATATGCAATGGATGCTGGTACTAGGCCCTTATATTGG
261 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* **
15275156 TCCCCTGTCCCTCATCAAATGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
326 -CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
15275221 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
15275286 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGTATGACGTCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
15275351 ACCAATTTTGGGGCCAAAAAT-CTCTCTGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTT
520 ACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTT
** * * *
15275414 TTGAGAATAATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
15275479 ACCATTGTATGAATTTAGAAGCCATAAAAATGGCTTTGGCACGTAGAAATATGAAGATGTGCCTA
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * * **
15275544 AACTCGCCTGCCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGACGTAGCACCC
713 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
15275609 GCCCGCCAAC-CC-GCTCATTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGA
778 GCCCGCC-TCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA
** * * * * * * *
15275672 TCGGACCAGACTGAG-GGTTGCGATAGCAGATTGACAGCACGTAAAGGGGGACTCGAC
842 TCAAACCAGAC-G-GCAG-CG-GAT-G--TA-TG--AGCACGCAGAGGGGGACCCGAT
** * * * * * * *
15275729 CGATCCCCATCTTGTGCATCCCGCCCTTCTGGCCGGTTGAGCGCCCGTACGCTCGCTTCATGTGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
15275794 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGCTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
15275859 GACC-GAGCCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGCATTTTTCT
131 GACCAGA-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
15275923 TC-ACTGGGGCACCATC-CTCGGAGCAACGCCAGAAAAAACCTGACCGGCGGCATTAGGGTTCCG
195 TCGTC-GGGGCACCATCGC-CGGAGCATCGCC-G-GAGAACCTGACCGACGGCATTGGGGTTCCG
** * *
15275986 ACGATCGGGGGGTTCGGGGGGTGTGCACACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTAT
256 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
15276051 ATTGGCCCCCCATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTT
321 ATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
15276116 TCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
385 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
15276181 AATCTTGTACACTTTGAGTTTTGAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCA
450 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
15276246 CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
515 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
15276311 ATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
580 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
15276376 GGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATGTAGAAAGATGAAGATGTGC
645 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * * * * * **
15276441 CTAAACCCACCTACAATCCTATCGATCCATGACTTGCTCATCTCATCTCTCTGTTCGACGTAGTG
710 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * *
15276506 CCCACCCGTCCGCCCACCCGGCC-GCTCGTTTCGTCGATTGCCTTAGGCATACGGAGTTCATTCC
775 ----CCCG-CC-CGC-CTC-GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** *
15276570 CAGTCTAAGATCCGACCGGATCAAGGGTTGTGCAGCAGGATCG---GCAGCACGCAGAGGGGGAC
832 CAGTCTATGATCAAACCAGA-C-------G-GCAGC-GGAT-GTATG-AGCACGCAGAGGGGGAC
*
15276632 CCGGT
885 CCGAT
*
15276637 CGATCCCCGGCTTGCGCATCCCG-CCCTCCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
**
15276701 TTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-T--C-G-----GAT-
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
15276749 ---------CGAGGGTTGCAGCAGCACATGCTGGGCTTGAGCATGTGTTGGTGCCGTATTTTTCT
130 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
15276805 TCGTTGGGGTACCAT---C---G--T---CGGAGAACCTGATCGGCGGCATTGGGGTTCC-AGCG
195 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CG
* * *
15276858 ATCGGGGGGGTCGGGGGGGGTCTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
259 ATCGGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
15276923 TTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCACA-CCCCTTAAAAAGCATTTGAGATTTTA
322 TTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* ** *
15276987 CAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGATGCTTTTTTCAAATGGTCAAAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
15277052 ATCTTGTACACTTCGAGTTTTTAGCTTAAATTTTTTGTGCAAGCCAA-AATAAATGCAAGGATCA
451 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCA
* * *
15277116 CGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
515 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
15277181 GTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCAGGAAACTTCACGTGAAGGCTTAG
580 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
15277246 GGGACCAGTGTATGAATTGACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGC
645 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
15277311 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTTTGGCCGGCGTAGTG
710 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
15277376 CTCGCCTG-CTCG--T-CGC-TTTCGTCGGTTGGCTTAGGCA-ACTGAGTTCATTCCCAG-CTAA
775 CCCGCCCGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAT
* * * * ** *
15277434 GATCAGGATCAGAACTTAGGGTATGCGGCAGTAGGCATTAGTAGCTTGCAGAGGGGAACCCGAT
840 GATCA-AACCAG-AC----GGCA-GCGG-A-T--GTA-T-G-AGCACGCAGAGGGGGACCCGAT
* * * * * * **
15277498 CGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCCGACTAAGCACCCTCACGCTCGTTTTATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
15277563 TGACTTAGGCATACGGCGAGTTCATTCCTAGTCTAAG
66 TGACTTAGGCATAC-G-GAGTTCATTCCCAGTCTAAG
15277600 ATCAGACCAG
Statistics
Matches: 13988, Mismatches: 1730, Indels: 968
0.84 0.10 0.06
Matches are distributed among these distances:
853 4 0.00
854 66 0.00
855 1 0.00
856 9 0.00
857 23 0.00
858 22 0.00
859 4 0.00
860 1 0.00
861 84 0.01
862 7 0.00
863 19 0.00
864 2 0.00
865 482 0.03
866 13 0.00
867 5 0.00
868 1 0.00
869 43 0.00
870 373 0.03
871 82 0.01
873 8 0.00
874 2 0.00
875 3 0.00
876 131 0.01
877 430 0.03
878 547 0.04
879 247 0.02
880 126 0.01
881 6 0.00
882 62 0.00
883 3 0.00
884 4 0.00
885 14 0.00
886 590 0.04
887 185 0.01
888 164 0.01
889 34 0.00
890 362 0.03
891 54 0.00
892 198 0.01
893 1011 0.07
894 644 0.05
895 18 0.00
896 21 0.00
897 55 0.00
898 774 0.06
899 925 0.07
900 662 0.05
901 1364 0.10
902 1160 0.08
903 361 0.03
904 181 0.01
905 132 0.01
906 1067 0.08
907 504 0.04
908 654 0.05
909 6 0.00
910 13 0.00
911 4 0.00
912 2 0.00
913 9 0.00
914 1 0.00
915 7 0.00
916 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAA
ACCAGACGGCAGCGGATGTATGAGCACGCAGAGGGGGACCCGAT
Found at i:15266881 original size:26 final size:26
Alignment explanation
Indices: 15266851--15266903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15266841 GTTGACTTGG
*
15266851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15266877 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15266903 G
1 G
15266904 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15268180 original size:901 final size:902
Alignment explanation
Indices: 15264162--15277599 Score: 17097
Period size: 902 Copynumber: 15.0 Consensus size: 902
15264152 GTTGACTTAG
* * * * * *
15264162 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15264227 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTGGGGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* ** * *
15264292 ACCTGACCGATGGCATTGGGGTTCCGGTGATCGGGGTGGCCGTGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * * * *
15264357 AATGGGTGCTGGTACTTGGACTTTATATTGGCCCCCTCTCCCTCATCAAATCTCCAGAACTTAGA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15264422 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TAGAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
* * * *
15264486 GGGGACACTTTATTT-GAATGGCCACAAAATATTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
325 GGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15264550 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15264615 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
15264680 TGCCATGAACCTTCACGCGAAGTCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
15264745 ATTGGCACATAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
15264810 GCATCTCGTCTCTTTGGCCGACGTAATGCTCGCCCGCCTGGCCGCCCGTTCGTTTCGTCGGTCGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * *
15264875 CTTAGGCGTACGGAGTTCATT-CCAGTCTAAGATTGGACCATACCGAGGGCTGCAGCAGTAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
15264939 TGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTA
778 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
15265004 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCGTACAGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15265064 GCATACGGAGTTCATTCCCAGTCTAAAATTGGACCAAACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15265129 CTCGGGCATGTGATGGTGCTGCATTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
15265194 ACCTGACCGACAGCGTTGGGGTTCCGACGATC-GGGGGGCTGGGGGGGTGTACGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
** * *
15265258 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTCATCCAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
15265323 ACCTCCTTAAAGAACATTTGAGATTTTACAGGCTTGCTTCCAGTAGCCATTCAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15265388 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15265453 TGCATGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGTCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15265518 ATTTTAAAAAATCCCGAACCTTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
15265583 GCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACATGCCATAAAAATGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15265648 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTATCACCCTATCGATCCACGGCCTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
15265713 CATCTCGTCTCTTTGGTCGACATAGTGCCAAACCGCCCGCCCGCCCACCTGCTCTTTTCGTCGGT
650 CATCCCGTCTCTCTGGCCGACGTAGTG-C---CCGCCC-TCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * **
15265778 TGGGTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCGGACTGGACCGAGGGTACCGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * * *
15265843 GATC-AGCAACACGCAGGGGGGGACTCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCTG
775 GATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
15265907 GCTGAGCGACCGCACGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCTGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
15265971 GCTTACAAAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15266036 CTCGGGCATATGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
15266101 ACCTG-CC-AGCAGCATTGAGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGTTGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15266164 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15266229 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGCAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15266294 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15266359 TGCATGCCAACAAAAATATAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15266424 TTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15266489 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15266554 TTGGCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
15266619 CATCCCGTCTCTCTGGCGGGCATAGTCCCCACCCGCCCGCCCGCCCGCCTGCTCGTCTCATCGGT
650 CATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCC-TCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * * * *
15266684 TGGCTTAGGCATATGGAATTTATTCCCAGTCTATGATCGAACCAGACTGATGGTTGCAGCAGCAA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
* * *
15266749 GATC-AGCAACACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
775 GATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
15266813 ACTGAGCTTCCC-CACGCTCGTTTCATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
839 GCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15266877 GCATACAGTGTTCATTCCCAGTCTAAGAT-TG----GACCGA----T-----AGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15266928 CTCGAGCATGTGCTAGTGCCGTATTTTTCTTC-ACTGGGGCACCATC-CTCGGAGCAACGCCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCAC-CGGAGCATCGCCGGA
* * * * *
15266991 GAACTTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
15267056 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15267121 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGACATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15267186 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** ** * ** *
15267251 GTGCACACCAACAAAAATGTAAGGATCACATCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
15267316 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15267381 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
15267446 ATTGCCACGCAAAAATATAAAGAAGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15267511 GCATCCCATCTCTATGGCCGGCGTAGTGCCCGCCCTCTCGCCTGCCCGCTCGTTTCGTCGATTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTC-CGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
15267576 C-TAGGCATATGAAGTTCTTTCCCAGTCTATGATCCGACCGGACCGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
15267640 CGACAGCACGCAGAGGGGGACGCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGGCGGTTG
778 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
15267705 AGTGCCCGTACGATCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15267765 GCACATGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGTGGCAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15267830 CTCGCGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* ** ** * *
15267895 ACTTGGTCGGGGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCACATATGATGTTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG-TG
* *
15267959 -GATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15268023 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15268088 GGGTACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15268153 TGCATGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15268218 ATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGT-TT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * **
15268282 TCTCATGAAACTTCACGTGAAAGCTTAAAGGACCATTGTATGAATTTACATGCCATAAAAATTAC
520 GC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
15268347 ATTGCCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGGTATACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * *
15268412 TTATCCCGTCTCTCCGGTCGACGTAGTGCCCGCCCACTCGCCCGTCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTC-CGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
15268477 GTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCAGACTGAGGGTTACGGCAGTAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * *
15268542 CTG-TAGCACGCAGAGGGGGACTCG-GCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
778 C-GACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * **
15268605 TGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15268667 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15268731 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGATCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* *
15268796 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15268861 GATGGGTGCTAGTACTTGGCCCTTATGTTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15268926 CACCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCACTAGCCATTAAAGTGCCAGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15268990 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATGTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* * * *
15269054 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15269119 ATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
15269184 GCCGTGAACCTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
15269249 TTGGCAAATAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15269314 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCAGCCCGCTCATTTCATCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCC-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
15269379 TTAGGCATACGGAGTTCATT-CCAGCCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
** * * * * *
15269443 GGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTAGCCGGTTGA
779 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
15269508 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
15269567 GCATAAGGAGTTCATTCCCAGTCTAAAATCAGACCAAATCGAGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
15269632 CTCGGGCATGCACTGGTGCCACATTTTTCTTCGTCGGGG---------C--AGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
** ** *
15269686 ACCTGACCGACAACATTGGGGTTCTAACGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * * *
15269751 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCTCCTATTCGTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15269816 CACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTCAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15269881 TGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
15269946 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** *
15270011 AATTTTAAAAAATCCCGAACCGTTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
454 AATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
15270076 TTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACATGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15270141 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTC
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
15270206 CGCATCTTGTCTCTCTGGCCGACGTAGTGCCCG--C-CCGCCTGCCTGCTCGTTTCGTCGATTGG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
15270268 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGG-TACTGGCAGCAGGA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCAGGA
* * * *
15270332 TC-AGCAACACGCAG-GGGGGACTCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGC
777 TCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
15270395 TGAGTGCCCGCACGCTCATTTCCTGGGTTGACTTGGGCATACGGCGTTCATTCCCAGTCCAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15270457 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
15270522 CTCGGACATGCGCTAGG-GCCATATTTTACTTCGTCGGGACAGCATCGCCGGAGCATCGCCGAAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * * *
15270586 AACTTGACCGACAGCATTGGTGTTCCGATGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15270651 CGATGGGTGCTGGCACTTAGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
15270716 ACCCCCTTAAAGAACTTTTGAGATTTTACAGGCTTGCTGCTAGTAGCCATTCAAGTGTATGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15270781 GGGGACAGTTTTTTCGAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAAGTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * *
15270846 -TGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
15270910 AATTTGAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAG-C
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-GTC
** * *
15270974 TTGCCATGAAACTTCAAATGAATGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15271039 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTATCACCCTATTGATCCACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15271104 CGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTGCCTGCTCGCCTGCTCGTTTCATCG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCT-CC-GCCCGCCCGCTCGTTTCGTCG
* * * * ** *
15271169 GTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAAACCGAGGG-TACTGGCAG
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAG
** * * * * *
15271233 CAGGATCGGTAGCACGCAGAGGGGGACTCGGTCGATCCTCGACTTGCGCATCCTGCCCCTCTGGC
772 CAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15271298 TGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTA
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15271363 A
902 A
* ** ** *
15271364 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTAAGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15271429 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
15271494 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGGCGAGGGGGTGTGTGCACATGTTGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * *
15271559 CGAAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCGTCTCCATCATCAAAGCTCGAGAACTCA
195 CG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15271623 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCT-ACA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
* *
15271687 ATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
15271752 TGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15271817 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15271882 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15271947 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
15272012 CGCATCCCGTCTCTCGGGCCGACATAGTGCCCGCCCGTCAGCCCGCCCGTTCGTTTCGTCAATTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-TCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
15272077 GCTTAGGCATATGGAGTTCATTCCCAGTCTATGATCGAATCGGACAGATGGTTGCGGCAGCAAGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
15272142 TCGACAGAACGCAGAGGGGGGCCCGGTCGATCCCCGGCTTACGTATCCCGCCCCTCTGGCCGACT
777 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
15272207 GAGGGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15272264 -C-TAC---G---A-T--C-G-----GA-C---CGAG-CTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15272307 CTCGGGCATGTGCTAGTGGCGTATTTTTCTTCG-CTGGGGCACCATC-CTCGAAGCAACGCCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCAC-CGGAGCATCGCCGGA
** * * * ** * *
15272370 GAACCTGACCGGTGACATTGGGGTTCTGATGATCGGGGGGTTCGAAGGGGTGTGCACACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATG
* * * *
15272435 TCCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCCAAAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15272500 ACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15272565 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15272630 TGTGCACGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTACCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
15272694 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15272759 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15272824 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
15272889 CGTATCACATCTCTCTGGCCAACGTAGTGCCCGCCCTCTCGCCGGCCCGCTCGTTTCATCGATTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTC-CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** ** ** *
15272954 GCTTAGGCATATGGAGTTCTTTCCTAGTCTATGATCCAACCGGATGGAGGGTTGTTGTAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * *
15273019 TCGACAGCACGTAGAGGGGGATCCG-GCGAATCGCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
777 TCGACAGCACGCAGAGGGGGACCCGATCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
15273083 TGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15273145 GCACATGGAGCTCATTTCCAGTCTAAAATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15273210 CTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCAACACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
15273275 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTCC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15273340 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAGCTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15273405 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTTTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15273470 GGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAAGTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15273535 GCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAA-TGCCCTT-CGAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT--CCTTCCGAAAA
* * ** * *
15273598 ATTTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15273663 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15273728 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTGGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
15273793 GCATCACATCTCTCTGGTTGGCGTAGTGCCCGCCCTCTCGCCAGCCCGCTCGTTTCG-C------
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTC-CGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * *
15273851 C--A-GC---C--CGCTCATT-TCA-TCTATGATCTGATCGGACCGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * ** * * *
15273906 CGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATGCCATCCCTATGTCCGGTTG
778 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
15273971 AGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
15274031 GCACATGGAGTTCATTCCCAATCTAAGATCGGACGGGACAGAGGGTTGCGGCAACACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
15274096 CTCGGGCATATGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCATTGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
*
15274161 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
15274226 CGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15274291 AACCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15274356 GGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** ** *
15274420 TGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAGAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15274485 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-TCCT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-CT
* * * * *
15274549 TGCCCTGAAACTTCACGTGAAGGCTTTAGGGACCATTCTATGAATTTACAAGCCATGAAAAGGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15274614 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15274679 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCG--C-CCGCCCGCTCGCTCGTTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
15274741 TTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCAACAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
** * * * * * * **
15274806 GGTAGCACGTAGAGGGGAACCCGATCGATCTCCGGTTTGCGCATCTCGCCCCGCTGGCTAGCTGA
779 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15274871 GCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *** * *
15274930 GCATACAGAGTTCCTTCCCAGTCTAAGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
15274995 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
15275060 ACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * **
15275125 AATGGATGCTGGTACTAGGCCCTTATATTGGTCCCCTGTCCCTCATCAAATGTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15275190 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15275255 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15275320 GCATGCCAACAAAAATACAAGTATGACGTCTACCAATTTTGGGGCCAAAAAT-CTCTCTGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAA
* ** * * *
15275384 ATTTTAAAAAATCTCGAACC-TCAAAAAGTTTTGAGAATAATGAAAAATAGAAAACGAGTCATCT
455 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15275448 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
15275513 TTTGGCACGTAGAAATATGAAGATGTGCCTAAACTCGCCTGCCATCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** ** *
15275578 GCATCCCGTCTCTCTGGCGGACGTAGCACCCG--C-CCGCCAACCCGCTCATTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
15275640 TTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCA-GATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * ** * * *
15275704 GACAGCACGTAAAGGGGGACTCGACCGATCCCCATCTTGTGCATCCCGCCCTTCTGGCCGGTTGA
779 GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
15275769 GCGCCCGTACGCTCGCTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15275828 GCATATGGAGCTCATTCCCAGTCTAAGATCGGACC-GAGCCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15275892 GCTCAGGCATGTGCTAGTGCCGCATTTTTCTTC-ACTGGGGCACCATC-CTCGGAGCAACGCCAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCAC-CGGAGCATCGCC-G
* * * * ** *
15275955 AAAAAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGTTCGGGGGGTGTGCACACATGA
127 -GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
15276020 TGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCCAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15276085 TCACACCCCCTTAAAGTGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15276150 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTGAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
15276215 TTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
15276280 AAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
15276345 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * *
15276410 GTCATTGGCATGTAGAAAGATGAAGATGTGCCTAAACCCACCTACAATCCTATCGATCCATGACT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * *
15276475 TGCTCATCTCATCTCTCTGTTCGACGTAGTGCCCACCCGTCCGCCCACCCGGCCGCTCGTTTCGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-TCCG----CCCGCCCGCTCGTTTCGT
* * * * * *
15276540 CGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCAAGGGTTG-TGCA
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* *
15276604 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG-CCCTCCTG
771 GCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-CTG
* **
15276668 GCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15276733 TAA
900 TAA
*
15276736 G-AT-C--AG---A-T--C-G-----GAT----------CGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15276775 CTTGAGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGG-----T-A-C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
15276829 ACCTGATCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGTCGGGGGGGGTCTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGG-C-CGGGGGGTGTGCGCACATGATG
* * *
15276893 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15276958 ACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
15277022 ATGGGGATGCTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTTAAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15277087 TGTGCAAGCCAA-AATAAATGCAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAA
388 TGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
15277151 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
15277216 CTTGCCAGGAAACTTCACGTGAAGGCTTAGGGGACCAGTGTATGAATTGACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
15277281 GCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
15277346 GCGCATCACGTCTCTTTGGCCGGCGTAGTGCTCG-CCT--GCTCG-TCG--C-TTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * ** *
15277404 GCTTAGGCA-ACTGAGTTCATTCCCAG-CTAAGATCAGGATCAGAACTTAGGGTATGCGGCAGTA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGA-CCGGACCGAGGGT-TGCGGCAGCA
* * ** * * *
15277467 GGCAT-TAGTAGCTTGCAGAGGGGAACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGC
774 GG-ATCGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * ** *
15277531 CGACTAAGCACCCTCACGCTCGTTTTATGGGTTGACTTAGGCATACGGCGAGTTCATTCCTAGTC
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-GAGTTCATTCCCAGTC
15277596 TAA
900 TAA
15277599 G
1 G
15277600 ATCAGACCAG
Statistics
Matches: 10980, Mismatches: 1368, Indels: 415
0.86 0.11 0.03
Matches are distributed among these distances:
856 8 0.00
857 18 0.00
858 27 0.00
859 3 0.00
860 7 0.00
861 86 0.01
862 7 0.00
863 19 0.00
866 1 0.00
868 2 0.00
869 40 0.00
870 375 0.03
871 86 0.01
875 1 0.00
876 4 0.00
877 416 0.04
878 348 0.03
879 5 0.00
882 73 0.01
883 5 0.00
884 1 0.00
885 5 0.00
886 596 0.05
887 155 0.01
888 183 0.02
889 35 0.00
890 274 0.02
891 51 0.00
892 179 0.02
893 681 0.06
894 189 0.02
895 2 0.00
896 1 0.00
897 12 0.00
898 552 0.05
899 952 0.09
900 658 0.06
901 1179 0.11
902 1201 0.11
903 360 0.03
904 184 0.02
905 8 0.00
906 836 0.08
907 528 0.05
908 624 0.06
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15271374 original size:26 final size:26
Alignment explanation
Indices: 15271338--15271390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15271328 GTTGACTTAG
* *
15271338 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15271364 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15271390 G
1 G
15271391 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15273852 original size:17 final size:17
Alignment explanation
Indices: 15273830--15273865 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
15273820 GCCCGCCCTC
*
15273830 TCGCCAGCCCGCTCGTT
1 TCGCCAGCCCGCTCATT
15273847 TCGCCAGCCCGCTCATT
1 TCGCCAGCCCGCTCATT
15273864 TC
1 TC
15273866 ATCTATGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.08, C:0.47, G:0.19, T:0.25
Consensus pattern (17 bp):
TCGCCAGCCCGCTCATT
Found at i:15274933 original size:26 final size:26
Alignment explanation
Indices: 15274904--15274956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15274894 GTTGACTTAG
*
15274904 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
**
15274930 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
15274956 G
1 G
15274957 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:15275832 original size:26 final size:26
Alignment explanation
Indices: 15275802--15275854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275792 GTTGACTTAG
*
15275802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15275828 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15275854 G
1 G
15275855 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15276254 original size:900 final size:898
Alignment explanation
Indices: 15272242--15277599 Score: 6638
Period size: 899 Copynumber: 6.0 Consensus size: 898
15272232 GTTGACTTAG
* * * * *
15272242 GCATACGGAGTTCATTCCCAGTCTACGATCGGACCGAGCTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15272307 CTCGGGCATGTGCTAGTGGCGTATTTTTCTTCG-CTGGGGCACCATCCTCGAAGCAACGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCTCGGAGCAACGCCGGAG
* * * * * *
15272371 AACCTGACCGGTGACATTGGGGTTCTGATGATCGGGGGGTTCGAAGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGTGTGCACACATGATGT
* * *
15272436 CCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCCAAAACTCA
194 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15272501 CACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15272566 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15272631 GTGCACGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTACCGAAAA
389 GTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
15272695 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15272760 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15272825 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGC
584 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
15272890 GTATCACATCTCTCTGGCCAACGTAGTGCCCGCCCTCTCGCCGGCCCGCTCGTTTCATCGATTGG
649 GCATCACATCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCAGCCCGCTCGTTTCGTCGATTGG
* * * * *
15272955 CTTAGGCATATGGAGTTCTTTCCTAGTCTATGATCCAACCGGA-TGGAGGGTTGTTGTAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACT-GAGGGTTG-TGTAGCAGGA
* * * *
15273019 TCGACAGCACGTAGAGGGGGATCCG-GCGAATCGCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
773 TCGACAGCACGTAGAGGGGGACCCGATCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
15273083 TGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15273145 GCACATGGAGCTCATTTCCAGTCTAAAATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAG-CCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
15273209 CCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGC-CAGAGCAACACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCAACGCCGGA
* *
15273273 GAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGT
* *
15273338 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAGCTCA
194 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15273403 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTTTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15273468 TGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15273533 GTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCC-AAAATGCCCTT-CGAA
389 GTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT--CCTTCCGAA
* * ** * *
15273596 AAATTTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15273661 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15273726 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTG
582 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
**
15273791 GCGCATCACATCTCTCTGGTTGGCGTAGTGCCCGCCCTCTCGCCAGCCCGCTCGTTTCG-C----
647 GCGCATCACATCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCAGCCCGCTCGTTTCGTCGATT
* * * * * * *
15273851 --C--A-GC---C--CGCTCATT-TCA-TCTATGATCTGATCGGACCGAGGGTTGTGGTAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGT-GTAGCAGG
* * * ** * * *
15273904 ATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATGCCATCCCTATGTCCGGT
772 ATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
15273969 TGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15274031 GCACATGGAGTTCATTCCCAATCTAAGATCGGA-CGGGACAGAGGGTTGCGGCAACACTTGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAG-CCGAGGGTTGCGGCAGCACATGCTGG
* * * **
15274095 GCTCGGGCATATGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCATTGC-CGGAGCATTGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-TCCTCGGAGCAACGCCGGA
* * * *
15274159 GAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGTGTGCACACATGATG
* *
15274224 TGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15274289 ACAACCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15274354 ATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** *
15274418 TGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAG
388 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* *
15274483 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-TC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-
* * * * *
15274547 CTTGCCCTGAAACTTCACGTGAAGGCTTTAGGGACCATTCTATGAATTTACAAGCCATGAAAAGG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15274612 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTT
582 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
15274677 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
647 GCGCATCACATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCGCTCGTTTCGTCGATTGGCT
* * * * *** *
15274742 TAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTGCAACAGTAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTG-TGTAGCAGGATCG
** * * * * * **
15274807 GTAGCACGTAGAGGGGAACCCGATCGATCTCCGGTTTGCGCATCTCGCCCCGCTGGCTAGCTGAG
776 ACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
15274872 CGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAA
841 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
15274930 GCATACAGAGTTCCTTCCCAGTCTAAGATCAGATTG-GACCGAGGGTTACGACAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAG-CCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15274994 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCAACGCCGGAG
* * * * * *
15275059 AACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTC
* * * * * **
15275124 CAATGGATGCTGGTACTAGGCCCTTATATTGGTCCCCTGTCCCTCATCAAATGTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15275189 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15275254 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
15275319 GGCATGCCAACAAAAATACAAGTATGACGTCTACCAATTTTGGGGCCAAAAAT-CTCTCTGAAAA
390 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT-TCCGAAAA
* ** * * *
15275383 AATTTTAAAAAATCTCGAACC-TCAAAAAGTTTTGAGAATAATGAAAAATAGAAAACGAGTCATC
454 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15275447 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
15275512 CTTTGGCACGTAGAAATATGAAGATGTGCCTAAACTCGCCTGCCATCCTATCGATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
15275577 CGCATCCCGTCTCTCTGG-CGGACGTAGCACCCGCCCGCCAACCCGCTCATTTCGTCGGTTGGCT
648 CGCATCACATCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCAGCCCGCTCGTTTCGTCGATTGGCT
* * * * *
15275641 TAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCA-GATTG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGTG-TAGCAGGATCG
* * * ** * * *
15275705 ACAGCACGTAAAGGGGGACTCGACCGATCCCCATCTTGTGCATCCCGCCCTTCTGGCCGGTTGAG
776 ACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15275770 CGCCCGTACGCTCGCTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15275828 GCATATGGAGCTCATTCCCAGTCTAAGATCGGACCGAGCCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15275893 CTCAGGCATGTGCTAGTGCCGCATTTTTCTTC-ACTGGGGCACCATCCTCGGAGCAACGCCAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCTCGGAGCAACGCC-G-G
* * *
15275957 AAAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGTTCGGGGGGTGTGCACACATGATG
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATG
* *
15276022 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCCAGAACTC
193 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15276087 ACACCCCCTTAAAGTGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15276152 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTGAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
15276217 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
388 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
*
15276282 AAATTTTAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15276347 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGT
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15276412 CATTGGCATGTAGAAAGATGAAGATGTGCCTAAACCCACCTACAATCCTATCGATCCATGACTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
15276477 CTCATCTCATCTCTCTGTTCGACGTAGTGCCCACCCGTCCGCCCACCCGGCCGCTCGTTTCGTCG
648 CGCATCACATCTCTCTGGCCGGCGTAGTG----CCCGCCCG-CCA---GCCCGCTCGTTTCGTCG
* * *
15276542 ATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGA-TCAAGGGTTGTGCAGC
705 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACT-GAGGGTTGTGTAGC
* * *
15276606 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG-CCCTCCTGGC
769 AGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGC
* * **
15276670 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAG--T-
833 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15276732 -
898 A
*
15276732 -C-TA---AG---------A-TC--AGATCGGAT-----CGAGGGTTGCAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAGCCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15276775 CTTGAGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGTACCA---T--------CGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCAACGCCGGAGA
* * *
15276829 ACCTGATCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGTCGGGGGGGGTCTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGTC--GGGGGGTGTGCACACATGATG
* * * *
15276893 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTC
193 TCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15276958 ACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
15277022 ATGGGGATGCTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTTAAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15277087 TGTGCAAGCCAAAATAAATGCAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAA
388 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * *
15277152 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
15277217 TTGCCAGGAAACTTCACGTGAAGGCTTAGGGGACCAGTGTATGAATTGACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15277282 CATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15277347 CGCATCACGTCTCTTTGGCCGGCGTAGT----GCTCGCCTGCTCG-TCGCTTTCGTCGGTTGGCT
648 CGCATCACATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCGCTCG-TTTCGTCGATTGGCT
* * * * * * * *
15277407 TAGGCA-ACTGAGTTCATTCCCAG-CTAAGATCAGGATCAGAACTTAGGGTATGCGGCAGTAGGC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-CGA-CCGGACTGAGGGT-TG-TGTAGCAGG-
* * ** * * * * *
15277470 AT-TAGTAGCTTGCAGAGGGGAACCCGATCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCCGA
772 ATCGA-CAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * ** *
15277534 CTAAGCACCC-TCACGCTCGTTTTATGGGTTGACTTAGGCATACGGCGAGTTCATTCCTAGTCTA
836 CTGAGCGCCCGT-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-GAGTTCATTCCCAGTCTA
15277598 A
898 A
15277599 G
1 G
15277600 ATCAGACCAG
Statistics
Matches: 3876, Mismatches: 499, Indels: 195
0.85 0.11 0.04
Matches are distributed among these distances:
856 8 0.00
857 21 0.01
858 30 0.01
859 3 0.00
860 7 0.00
861 85 0.02
862 7 0.00
863 13 0.00
865 1 0.00
868 1 0.00
869 38 0.01
870 374 0.10
871 84 0.02
879 1 0.00
882 75 0.02
883 2 0.00
884 1 0.00
885 7 0.00
886 588 0.15
887 164 0.04
888 5 0.00
889 3 0.00
890 1 0.00
891 1 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 7 0.00
898 365 0.09
899 662 0.17
900 489 0.13
901 5 0.00
902 253 0.07
903 379 0.10
904 12 0.00
905 3 0.00
906 1 0.00
907 8 0.00
908 165 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAGCCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTCGGAGCAACGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTCC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCACATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCGCTCGTTTCGTCGATTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGTGTAGCAGGATCGACAGC
ACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15277603 original size:165 final size:159
Alignment explanation
Indices: 15277399--15277917 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 159
15277389 CGCTTTCGTC
* * * **
15277399 GGTTGGCTTAGGCA-ACTGAGTTCATTCCCAG-CTAAGATCAGGATCAGAACTTAGGGTATGCGG
1 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCAG-ACCGAGGGT-TGCGG
* * * *** *
15277462 CAGTAGGCATTAGTAGCTTGCAGAGG-GGAACCCGATCGAT-CCCAGGCTTGCGCATCCCGCCCC
63 CAGCAAG-ATTAGCAGCACACAGAGGTGG-ACCCGATCGATCCCCA-GCTTGCACATCCCGCCCC
* *
15277525 TCTAGCC-GACTAAGCACCCTCACGCTCGTTTTATG
125 TCTAGCCAG-CTAAGCACCCGCACGCTCGTTTCATG
* *
15277560 GGTTGACTTAGGCATACGGCGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
1 GGTTGACTTAGGCATAC--AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * * * * *
15277625 AGCAAGATTGGCAGCACACAGAGGTGGAGCCGTTCGATCCCCAGCTTGCACATCCTGTCCCTCTG
64 AGCAAGATTAGCAGCACACAGAGGTGGACCCGATCGATCCCCAGCTTGCACATCCCGCCCCTCTA
* *
15277690 GCCAGCTGAGCACCCGCATGCTCGTTTCATG
129 GCCAGCTAAGCACCCGCACGCTCGTTTCATG
* * * * *
15277721 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* ** * * * * * *
15277786 CAGGATCGGCAGCACACAGAGGGGGACCCG-GCTGATCCTCGGCTTGCACATCTCACCCCTCTAG
66 CAAGATTAGCAGCACACAGAGGTGGACCCGATC-GATCCCCAGCTTGCACATCCCGCCCCTCTAG
* * * *
15277850 CCGGTTGAGCACCCGCACGCTCGTTTCGTG
130 CCAGCTAAGCACCCGCACGCTCGTTTCATG
* *
15277880 GGTTAACTTAGGCATACAGAGTTCACTCCCAGTCTAAG
1 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
15277918 CATACGGAGT
Statistics
Matches: 301, Mismatches: 49, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
158 1 0.00
159 153 0.51
161 94 0.31
162 19 0.06
163 7 0.02
164 18 0.06
165 9 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
CAAGATTAGCAGCACACAGAGGTGGACCCGATCGATCCCCAGCTTGCACATCCCGCCCCTCTAGC
CAGCTAAGCACCCGCACGCTCGTTTCATG
Found at i:15277797 original size:159 final size:157
Alignment explanation
Indices: 15277482--15277917 Score: 516
Period size: 159 Copynumber: 2.7 Consensus size: 157
15277472 TAGTAGCTTG
* * * * *
15277482 CAGAGGGGAACCCGATCGAT-CCCAGGCTTGCGCATCCCGCCCCTCTAGCCGACTAAGCACCCTC
1 CAGAGGGGGACCCG-TCGATCCCCA-GCTTGCACATCCTGCCCCTCTAGCCG-CTGAGCACCCGC
* * * *
15277546 ACGCTCGTTTTATGGGTTGACTTAGGCATACGGCGAGTTCATTCCTAGTCTAAGATCAGACCAGA
63 ACGCTCGTTTCATGGGTTGACTTAGGCATAC--AGAGTTCATTCCCAGTCTAAGATCAAACCAGA
*
15277611 CCGAGGGTTGCGGCAGCAAGATTGGCAGCACA
126 CCGAGGGTTGCGGCAGCAAGATCGGCAGCACA
* * * *
15277643 CAGAGGTGGAGCCGTTCGATCCCCAGCTTGCACATCCTGTCCCTCTGGCCAGCTGAGCACCCGCA
1 CAGAGGGGGACCCG-TCGATCCCCAGCTTGCACATCCTGCCCCTCTAGCC-GCTGAGCACCCGCA
* * * *
15277708 TGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTG
64 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCG
* *
15277773 AGGGTTGTGGCAGCAGGATCGGCAGCACA
129 AGGGTTGCGGCAGCAAGATCGGCAGCACA
* * * * *
15277802 CAGAGGGGGACCCGGCTGATCCTCGGCTTGCACAT-CTCACCCCTCTAGCCGGTTGAGCACCCGC
1 CAGAGGGGGACCCGTC-GATCCCCAGCTTGCACATCCT-GCCCCTCTAGCC-GCTGAGCACCCGC
* * *
15277866 ACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCACTCCCAGTCTAAG
63 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
15277918 CATACGGAGT
Statistics
Matches: 235, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
158 3 0.01
159 152 0.65
161 75 0.32
162 5 0.02
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (157 bp):
CAGAGGGGGACCCGTCGATCCCCAGCTTGCACATCCTGCCCCTCTAGCCGCTGAGCACCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAG
GGTTGCGGCAGCAAGATCGGCAGCACA
Found at i:15277927 original size:26 final size:26
Alignment explanation
Indices: 15277891--15277943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15277881 GTTAACTTAG
*
15277891 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
* *
15277917 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
15277943 G
1 G
15277944 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:15278562 original size:12 final size:12
Alignment explanation
Indices: 15278545--15278576 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15278535 CCAAGGGTTA
15278545 CGGTAGCAGGAT
1 CGGTAGCAGGAT
15278557 CGGTAGCAGGAT
1 CGGTAGCAGGAT
*
15278569 CGGCAGCA
1 CGGTAGCA
15278577 TGCAGAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.22, G:0.41, T:0.12
Consensus pattern (12 bp):
CGGTAGCAGGAT
Found at i:15278698 original size:26 final size:26
Alignment explanation
Indices: 15278668--15278720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15278658 GTTGACTTAG
*
15278668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15278694 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15278720 G
1 G
15278721 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15280505 original size:159 final size:159
Alignment explanation
Indices: 15280254--15280658 Score: 446
Period size: 159 Copynumber: 2.6 Consensus size: 159
15280244 CCCGCCTGCC
* *
15280254 CGCCCGTC-CGCTCGTTTCATTGGTT-AGCTTAGGCATAC-GAGTTCATTCTCAAAG--TAAGAT
1 CGCCCG-CACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTC-C-AAGTCTAAGAT
* ** * * *
15280314 CGGACCATACCGAGGGTTGCGGCAGTAGGATCGGCAGCA-TACAGAGGGGGACCCAGCCAATCCC
62 CGAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGA-AAAGGGGGACCCAGCCAATCCC
* * * * *
15280378 TGGCTTGCGCATCCCACCCTTCTGGCCGGTTCAG
126 CGACTTGCACATCCCACCCCTCTGGCCGGCTCAG
* * *
15280412 TGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAA
* * * * * *
15280477 CCGGATCGAGGGTTGTGGCAGCATGATCGGCAGCACGAAAAGGGGGACCCGGTCGATCCCCGACT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGAAAAGGGGGACCCAGCCAATCCCCGACT
* *
15280542 TGCACATCCCGCCCCTCTGGCCGGCTGAG
131 TGCACATCCCACCCCTCTGGCCGGCTCAG
* * *
15280571 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATC-AG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGA-
* *
15280635 ACCGGACCAAGGGTTGCGACAGCA
65 ACCGGACCGAGGGTTGCGGCAGCA
15280659 CATGTTGGGC
Statistics
Matches: 207, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
157 3 0.01
158 32 0.15
159 171 0.83
160 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAA
CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGAAAAGGGGGACCCAGCCAATCCCCGACT
TGCACATCCCACCCCTCTGGCCGGCTCAG
Found at i:15282216 original size:26 final size:26
Alignment explanation
Indices: 15282187--15282239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15282177 GTTGACTTAG
*
15282187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15282213 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15282239 G
1 G
15282240 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15283129 original size:26 final size:26
Alignment explanation
Indices: 15283092--15283144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283082 GTTGACTTAG
15283092 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15283118 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15283144 G
1 G
15283145 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15283210 original size:906 final size:903
Alignment explanation
Indices: 15281306--15290159 Score: 8961
Period size: 906 Copynumber: 9.7 Consensus size: 903
15281296 GCTGGCTTAG
* * * * *
15281306 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15281371 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15281436 ACCTGA-CTAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGGG
131 ACCTGACCT-GCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
15281500 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTTCTCTCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15281565 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15281630 GGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * *
15281695 TGCGTGCCAAAAAAAATACAAAGATAACGTCTGCCAAGTTT-GGACCTAAAACTCCTTCCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTCGAAAA
* * *
15281759 AATTTTAAAAAAGCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
15281824 TGCCATAAAACTTCACATGAACGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
15281889 ATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15281953 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGGCCTCCCGCCCGCCTGCCCGCTCGTTTCGTCG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CT-CCCGCTC-TTTCGTCG
* ** * ** *
15282018 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGCCCAAACTGAGGGTTGCGGCAGC
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
*** * *
15282083 AGGATCGGCAGCACACCGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCC
775 AGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA-CCCTCTGGCC
* * *
15282148 GGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** *
15282213 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
15282278 CTTGGGCATGTGCTGGT-CCACATTTTTCTTCACCGGGGAACCGTCGCCGAAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** ** *
15282342 ACCTGACCTGCAGCATTGTGGTTAAGGTGATTGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
15282407 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15282472 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15282537 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15282602 GAATGCCAACAAAAATACAAGGATCATGTCTACCAACTTTGGGGCAAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
*
15282667 TTTTAAAAAATCCTGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
15282732 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-ATCCATAAAAATGGCAG
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
15282796 TGACACTCAGAAAAATGAAGATGTTCCTAAACCAACCTACCACCATATTGATCCACGGCTTTCGC
586 TGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15282861 ATCTCGTCTCTCTTGCCGACATAGTGCCCGCCCGCCCGCCCGCCTACCCGCTTCTTTCGTCGGTT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CT-CCCGC-TCTTTCGTCGGTT
* * * **
15282926 GGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCCACAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * *
15282991 ATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCTACCCTCTGGCCGTC
778 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-ACCCTCTGGCCGGC
*
15283056 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * * * **
15283118 GCATACATAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCTGCACATGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15283183 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15283248 ATCTAACC-GACAGCATTAGGGTTCCGACGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCTG-CGGCATTGGGGTTCCGACGATCGCGGGGG-CCGGGGGGTGTGCGCACATGATGT
* * *
15283311 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCG
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15283376 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15283441 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
15283506 GTGCATGCCAAAAAAAATACAACAATCACGTATACCAAGTTTGGGGCCAAAACACC-CTCGGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* *
15283570 AAATTTTAAAAAATCTCG-AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGATAACGAGTCGT
453 AAATTTTAAAAAATCCCGAAACT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*** * *
15283634 CTTAAAATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15283699 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * *
15283764 GCGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGACCGCCCGCCCGCCCGCCCACTCCTTTCGTC
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG--CTCCCGCT-CTTTCGTC
* * *
15283829 GGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCAGCAG
709 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
** ** * * *
15283894 CAGGATCGATAGCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCACATCTCACCCCTCTGGC
774 CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA-CCCTCTGGC
* * *
15283959 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTA
838 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
15284024 A
903 A
* * * * * *
15284025 GCACACGGAGTTCATT-CCAGTCTAAGATTGGATCAAACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
15284089 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
15284143 ACCTGACCGGCGGCATTGAGGTTTCGGCGATCG-GGGGGTCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15284207 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTTG-GAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
**
15284271 ACCCCCTTAAAGAGCATTTGAGATTTTATC-GGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** * * *
15284335 TGGGGTCACTTTTTTCAAATGGTCGTAAAATCTTGTACAGTTCGAGTTTTTAGCTCACTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
15284400 ATGCAGGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTCAGGGCTAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * * *
15284464 AATTTTAAAAAATCACGAACCGCAAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
15284529 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15284594 TTTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * * *
15284658 GGCACCCCGACTCTCTGGCTGGCATGGTGCCCACCTG---G-CTGCT-----TGTTTCGTCGGTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTCTTTCGTCGGTT
* * * * * *
15284714 GGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTAACAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * **
15284779 ATCAGCAGCACGCAGAGAGGGACCC-AGTCGATCCCCGGCTTATGCATCTCGC-CCCTCTGGCCG
778 ATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC-C-CACCCTCTGGCCG
* * * * *
15284842 ACTGAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGCCATACGGAGTTCATTCCAAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * * *
15284906 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGATTGAGGGTTACGGTAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15284971 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCACCGAAGCATCGCTGG-GA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15285035 ACCTGATC-GACGGCATTAGCGTTCCGATGATCG-GGGGGCCGGGGGGGTATGCGCACATGATGT
131 ACCTGACCTG-CGGCATTGGGGTTCCGACGATCGCGGGGGCC-GGGGGGTGTGCGCACATGATGT
** *
15285098 GCCTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15285163 CACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15285228 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *** * **
15285293 GTGCATGCCAACAAAAATACAAGGATCACATCTAATAAGTTTGTCACCAAAACCCCTTTTAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAA
* * ** *
15285358 AAATTTTAAAAAATCCCGAACCGT-AAAAAG-TTC-AAAATGC-T-----CT-TTAAA-G-GTTG
453 AAATTTTAAAAAATCCCGAAAC-TCAAAAAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCG
*
15285411 TC-TGCCATGAAACTTCACGTGAAGGCTT-AGGGGCCA----ATG-ATTTA-AAGCC-TAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15285467 -GCA-T-GCA-TCACACAT-TG-AGATGTGCCTAAACGCACCTACC-CACTATCGA-ACAC--CT
581 GGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15285522 AATGCGCATTCCGTCTCTC-GG-CGAC-TAGT----GTCCGCCCGCCCGCT---G-------GTC
646 --TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTCTTTCGTC
* * * *
15285570 GGTTGGC-AAGACATA--G-GTGCA-TGCCA--CTAAGATCAGACCGGACC-A-GG-TGC-GCAG
709 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * * * * * *
15285624 CAGGATCGGTAGCACG--CA--GGGACCCGATCGATCCTCGACTTGC-CAT--GAACTTCTGGCC
774 CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTCTGGCC
* * * *
15285682 --CTGAGCGCCCGCACACTCGTTTCATTGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAA
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
15285745 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACC-AGGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGCGGCAGCACATGCTGG
* ** ** *
15285809 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
15285874 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGCGGCTGTGCGCACATGACG
130 AACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGG-GG-TGTGCGCACATGATG
*
15285939 TGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15286004 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15286069 ATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACATCGAGTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15286134 TGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * *
15286199 AAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15286264 TTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15286329 CATTTGCACAT-AGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTT
583 CATTGGCAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15286393 GCGCAGCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCT--CG---TTTCGTCTGT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTCTTTCGTCGGT
* ** * * * * *
15286449 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACGGTACCAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * * * * *
15286514 GATGGGCAGCACATAGAGAGGGACCCGACTGATCCTCGGCTTACGCATCCCGCTCCTCCGGGCGG
777 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCAC-CCTCTGGCCGG
** * * * *
15286579 CTGAGCGCCCGCATTCTCATTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15286642 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGGGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15286707 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15286772 ACCTGACCGGCGGCATTAGGGTTCCGACGAT--C---GG--GGGGGTTGTGCGCACATGATGTGG
131 ACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGT-G
* ** ** * * * * * *
15286830 ATCGGACCGAGGGTTTTGGTAGCACATTCTGGGCTCAGGAATGTGTTGGTGCCGCATTTCTCTTC
195 --C-GA---TGGGTGCTGGT---AC--T-T-GGC-C---CTTATATT-G-GCCCCCTATC-CCTC
* * * ** *** * * * * * **
15286895 GCTGGGGCACCATCGC-CGGAGCATCGTCGGAGAACCTGACCAGCGACA-TTGGGGTTCCGACGA
240 -AT----CA--AAC-CTC-GAG-AAC-TCACACCCCCTTA-AAGAG-CATTTGAGATT-TTAC-A
*** *** * * * *
15286958 TCGGGGGGGCTGGGGGGGTTGTGCACATATGATGTG-C-G--ATGGGTGCCGGTACTTGGCCCCT
290 ---GGTTTGCT--GCCAG-T-AGC-CAT-TAAAGTGTCTGAAATGGG-GAC---ACTT------T
** *** * ** * ** *** ***
15287019 ATATTAGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
336 -T-TT-----CAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---TGA-ATT
* ** ** * * * ** *
15287084 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCCGAAATGGGGA-CACTTTTTTCAA--AT-GG
384 TT-----TTTG-T-GCA-T-GCCAACAAA-AATAC--AA---GGATCACGTCTACCAAGTTTGGG
* **** *
15287145 TCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
434 GC-CAAAA-C---T---C--C-----TTT--C-GAA-AAAATT-T---T----A-AAAAAT-C-C
* * **
15287210 GGATCACATCTACCAAGTTTGGGCCAAAACTCCCTTCGAAAAAATTTTAAAAAATCCCAAACCAC
469 CGA-AAC-TC-AAAAAG--T--------------TTC------------AAAAAT---------C
* *
15287275 AAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGG
494 ----A---TGAAAAA----------TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
15287340 CTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA-TGCAGAAATATGAAG
542 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAG
* * * *
15287404 ATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTAGCCGAC
606 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
15287469 GTAGTGCCCGCCCGCCTGTCCG--CCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTACAT
671 GTAGTGCCCGCCCGCCCGCCCGCTCCCGCTC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
15287532 TTCTAGTCTAAGATCAGGCCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGA
735 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGA
* * * * *
15287597 CCTGATCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTC
800 CCCGACCGATCCCCGGCTTGCGCATCCC-ACCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
15287662 TTGGGTTGACTTAGGCATACGGAGTTTATTTCCAGTCTAA
864 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15287702 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15287767 ATCGGGCATGTGCTGGTGCCACATTTTT-TTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15287831 ACTTGATC-GACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGAGGGGTTGTGCGCACATGAT
131 ACCTGACCTG-CGGCATTGGGGTTCCGACGATCGCGGGGGCC-GG-GGGG-TGTGCGCACATGAT
* * *
15287895 GTGCGATGGGTCCTTGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15287960 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15288025 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * **
15288090 TTGTGCATCCCAACAAAAATACAAGCATCACGTATACCATGTTTGGGCCCAAAACAGC-TTCTGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G-
*
15288154 AAAAAATTTTAAAAAATCCC-AAACCGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAG
450 AAAAAATTTTAAAAAATCCCGAAA-CTCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAG
*
15288217 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
15288282 AATGGTATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
578 AATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
15288346 GACTTCCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCG--CCCGCTCGTTTC
642 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTC-TTTC
* * ** ** * *
15288409 GTTGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATTGGACAAGACCAAGGGTTGTGG
706 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* *
15288474 CAGCAGGATCGGCAGCACGTGGAGGGGGACCCGACCGATCCCCTGCTTGCGCATCCCACCCCTCT
771 CAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA-CCCTCT
* *
15288539 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATAC-GAAGTTCATTCCCAG
835 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAG
15288603 TCTAA
899 TCTAA
* * ** *
15288608 GCATACGGAGTTCATTTCCAATCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ***
15288673 CTTGGGCATGTGCTGGT-CCACATTTTTCTTCACCGGGGAACCGTCGCCGAAGCATCGTTAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** ** *
15288737 ACCTGACCTGCAGCATTGTGGTTAAGGTGATTGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15288802 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15288867 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
15288932 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTAGTTTTTAGCTGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15288997 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* **
15289062 TTTTAAAAAATCTCGAAACAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTT
456 TTTTAAAAAATCCCGAAAC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15289126 GCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
15289191 TTGGCACGT-AGAAATATGCAA-ATTTTTCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
585 TTGGCAC-TCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*** * *
15289254 CGCATCTTATCTCTCTGGCCGGCGTAGT----GCCCGTCCGCCCG-T-CCGCTCATTTCGTCGGT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTC-TTTCGTCGGT
* * * * * ** *
15289313 TGGCTTAGGAATACGGAGTTCACTCCCAGTCTATGATCAGACCCGATCGAGTTTTACGGCAGC--
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
** * **
15289376 -AT--GCAG-AC------GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCTAG
777 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCAC-CCTCTGGCCGG
* * *
15289431 CTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
15289494 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
15289559 CTCAGGCATATGCTGGTGCCGCATATTTCTTCGTCAGGGCACCATCGTCGGAGCAGCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15289624 ACCTGA-CTGGCGGCATTGGGGTTCCGACAATCG-GGGGG-TGGGGGGT-TGTCGCACATTATGT
131 ACCTGACCT-GCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTG-CGCACATGATGT
* * **
15289685 GCGATGGGTGCTGGTACTTGGCCCGTATATTGGTCCCCTATCCCTCATCAAACCTAAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
15289750 TACACCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAACTGTCTCAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15289815 TGGGGACACTTTTTTCAAATGATCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
15289880 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-AACTTTCTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * ** * * *
15289944 AAATTTTAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACAAGTCGT
453 AAATTTT-AAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15290009 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15290073 GCATTGGCACACAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATTCACGGCTT
582 GCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15290138 GCGCATCCCGTCTCTCTAGCCG
647 GCGCATCCCGTCTCTCTGGCCG
15290160 GCTGAGCGCC
Statistics
Matches: 6632, Mismatches: 962, Indels: 728
0.80 0.12 0.09
Matches are distributed among these distances:
838 1 0.00
839 164 0.02
840 34 0.01
841 49 0.01
842 246 0.04
843 6 0.00
844 3 0.00
845 19 0.00
846 1 0.00
847 1 0.00
848 1 0.00
849 19 0.00
850 4 0.00
851 7 0.00
852 26 0.00
853 24 0.00
855 4 0.00
856 4 0.00
857 4 0.00
858 5 0.00
859 10 0.00
860 17 0.00
861 5 0.00
862 1 0.00
863 3 0.00
864 5 0.00
865 10 0.00
866 25 0.00
867 10 0.00
868 34 0.01
869 10 0.00
870 27 0.00
871 21 0.00
872 5 0.00
873 3 0.00
874 1 0.00
875 2 0.00
876 16 0.00
877 11 0.00
878 5 0.00
879 4 0.00
880 5 0.00
881 192 0.03
882 74 0.01
883 23 0.00
884 35 0.01
885 352 0.05
886 279 0.04
887 76 0.01
888 15 0.00
889 6 0.00
890 5 0.00
891 23 0.00
892 44 0.01
893 463 0.07
894 245 0.04
895 91 0.01
896 1 0.00
897 199 0.03
898 78 0.01
899 1 0.00
900 1 0.00
901 1 0.00
902 200 0.03
903 259 0.04
904 7 0.00
905 387 0.06
906 1430 0.22
907 380 0.06
908 9 0.00
909 3 0.00
910 1 0.00
914 2 0.00
916 9 0.00
917 4 0.00
918 3 0.00
919 7 0.00
920 9 0.00
921 3 0.00
922 1 0.00
925 5 0.00
927 8 0.00
928 3 0.00
929 3 0.00
930 4 0.00
931 9 0.00
932 6 0.00
937 1 0.00
938 1 0.00
939 2 0.00
944 6 0.00
945 2 0.00
946 4 0.00
947 4 0.00
949 7 0.00
950 2 0.00
953 3 0.00
954 5 0.00
958 1 0.00
959 4 0.00
960 5 0.00
961 4 0.00
962 3 0.00
963 6 0.00
964 3 0.00
965 9 0.00
966 9 0.00
967 1 0.00
968 8 0.00
969 3 0.00
970 2 0.00
973 2 0.00
974 5 0.00
975 3 0.00
976 2 0.00
980 2 0.00
982 2 0.00
983 3 0.00
984 2 0.00
985 1 0.00
988 3 0.00
989 7 0.00
990 1 0.00
991 8 0.00
992 4 0.00
993 8 0.00
994 7 0.00
995 3 0.00
996 3 0.00
997 2 0.00
998 8 0.00
1000 1 0.00
1003 5 0.00
1004 3 0.00
1007 2 0.00
1008 6 0.00
1010 4 0.00
1011 4 0.00
1012 2 0.00
1013 3 0.00
1014 3 0.00
1018 2 0.00
1019 1 0.00
1020 1 0.00
1024 409 0.06
1025 380 0.06
1026 489 0.07
1027 334 0.05
1028 303 0.05
1029 306 0.05
1030 517 0.08
1031 428 0.06
1032 368 0.06
1033 266 0.04
1034 353 0.05
1035 281 0.04
1036 386 0.06
1037 295 0.04
1038 275 0.04
1039 249 0.04
1040 228 0.03
1041 241 0.04
1042 223 0.03
1043 180 0.03
1044 249 0.04
1045 158 0.02
1046 122 0.02
1047 151 0.02
1048 174 0.03
1049 158 0.02
1050 187 0.03
1051 326 0.05
1052 738 0.11
1053 240 0.04
1054 869 0.13
1055 349 0.05
1056 648 0.10
1057 277 0.04
1058 146 0.02
1059 519 0.08
1060 563 0.08
1061 69 0.01
1062 83 0.01
1063 54 0.01
1064 70 0.01
1065 128 0.02
1066 74 0.01
1067 81 0.01
1068 66 0.01
1069 132 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCTGCGGCATTGGGGTTCCGACGATCGCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCGAAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCCCGCTCTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
GGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15284917 original size:26 final size:26
Alignment explanation
Indices: 15284881--15284932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15284871 TTGACTTAGC
15284881 CATACGGAGTTCATTC-CAAGTCTAAG
1 CATACGGAGTTCATTCTC-AGTCTAAG
15284907 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
15284933 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAG
Found at i:15285748 original size:26 final size:26
Alignment explanation
Indices: 15285719--15285771 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15285709 GTTGACTTAG
*
15285719 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15285745 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15285771 G
1 G
15285772 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15286646 original size:26 final size:26
Alignment explanation
Indices: 15286616--15286668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15286606 GTTTACTTAG
15286616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15286642 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15286668 G
1 G
15286669 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15286962 original size:156 final size:156
Alignment explanation
Indices: 15286678--15286966 Score: 418
Period size: 156 Copynumber: 1.9 Consensus size: 156
15286668 GATCGGACTA
* * *
15286678 GACCGAGGGTTGGGGTAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
1 GACCGAGGGTTGGGGTAGCAAATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTCTCTTCGTCG
* * *
15286743 GGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGG
66 GGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCAGCGACATTAGGGTTCCGACGATCGGGG
15286808 GGGTTGTGCGCACATGATGTGGATCG
131 GGGTTGTGCGCACATGATGTGGATCG
** * * * *
15286834 GACCGAGGGTTTTGGTAGCACATTCTGGGCTCAGGAATGTGTTGGTGCCGCATTTCTCTTCG-CT
1 GACCGAGGGTTGGGGTAGCAAATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTCTCTTCGTC-
** * *
15286898 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGACATTGGGGTTCCGACGATCGGG
65 GGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCAGCGACATTAGGGTTCCGACGATCGGG
15286963 GGGG
130 GGGG
15286967 CTGGGGGGGT
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
155 1 0.01
156 115 0.99
ACGTcount: A:0.17, C:0.24, G:0.37, T:0.22
Consensus pattern (156 bp):
GACCGAGGGTTGGGGTAGCAAATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTCTCTTCGTCG
GGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCAGCGACATTAGGGTTCCGACGATCGGGG
GGGTTGTGCGCACATGATGTGGATCG
Found at i:15287705 original size:26 final size:26
Alignment explanation
Indices: 15287676--15287728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15287666 GTTGACTTAG
* * *
15287676 GCATACGGAGTTTATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15287702 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15287728 G
1 G
15287729 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15288619 original size:26 final size:26
Alignment explanation
Indices: 15288582--15288634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15288572 GTTGATTTAG
*
15288582 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
15288608 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15288634 G
1 G
15288635 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15289105 original size:26 final size:26
Alignment explanation
Indices: 15289057--15289114 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
15289047 CTCCTTTTGA
* *
15289057 AAAAATTTTAAAAAATCTCGAAACAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
*
15289083 AAAAAGTTTCAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAT
15289109 AGAAAA
1 A-AAAA
15289115 TAAGTCGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.62, C:0.09, G:0.07, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:15291131 original size:25 final size:26
Alignment explanation
Indices: 15291084--15291135 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15291074 GTTGACTTAG
* **
15291084 GCATACGAAGTTCATTCTGAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
15291110 GCATA-GAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
15291135 G
1 G
15291136 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:15292061 original size:26 final size:26
Alignment explanation
Indices: 15291983--15292054 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
15291973 GTTGACTTAG
*
15291983 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
15292009 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15292035 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
15292055 ATCTAAGATC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15292949 original size:26 final size:26
Alignment explanation
Indices: 15292912--15292964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15292902 GTTGACTTAG
15292912 GCATACGAAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
* *
15292938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
15292964 G
1 G
15292965 ACCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:15293833 original size:26 final size:26
Alignment explanation
Indices: 15293804--15293856 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293794 GTTGACTTAG
*
15293804 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15293830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15293856 G
1 G
15293857 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15296521 original size:26 final size:26
Alignment explanation
Indices: 15296485--15296537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15296475 GTTGACTTAG
* * *
15296485 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15296511 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15296537 G
1 G
15296538 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15297392 original size:26 final size:26
Alignment explanation
Indices: 15297350--15297402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15297340 GTTGACTTAG
15297350 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15297376 GCATACAGTGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15297402 G
1 G
15297403 ATCGGATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15298207 original size:26 final size:26
Alignment explanation
Indices: 15298171--15298223 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298161 GTTGACTTAG
15298171 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15298197 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15298223 G
1 G
15298224 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15299297 original size:13 final size:13
Alignment explanation
Indices: 15299279--15299308 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15299269 CCTGAGGGGG
15299279 TGTGTGCACATGA
1 TGTGTGCACATGA
15299292 TGTGTGCACATGA
1 TGTGTGCACATGA
15299305 TGTG
1 TGTG
15299309 CGATGGGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (13 bp):
TGTGTGCACATGA
Found at i:15300905 original size:26 final size:26
Alignment explanation
Indices: 15300876--15300928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15300866 GTTAACTTAG
15300876 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15300902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15300928 G
1 G
15300929 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15301801 original size:26 final size:26
Alignment explanation
Indices: 15301765--15301817 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15301755 GTTGACTTAG
*
15301765 GCATACGGAGTAAATTCCTAGTCTAA
1 GCATACGGAGTAAATTCCCAGTCTAA
* **
15301791 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTAAATTCCCAGTCTAA
15301817 G
1 G
15301818 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTAAATTCCCAGTCTAA
Found at i:15301946 original size:889 final size:891
Alignment explanation
Indices: 15298027--15310499 Score: 14983
Period size: 904 Copynumber: 13.9 Consensus size: 891
15298017 GGGTTACGCA
* * * * *
15298027 TCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGAATCGACAGCACGTAGAGGGGAA
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * *
15298092 CCCGACCGATCTCGGGCTTGCGCATCCCGCCCCTCTGGCTGGCTCAGCACCCGCACGCTCGTTTC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
15298157 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
15298222 AGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGCTGCTGCATT
195 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
15298287 TATATTCG-CTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACAGGCGGCATTGGGGTTC
260 TTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
15298351 CGACCATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
324 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15298416 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCCTTTGAGAT
389 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
15298481 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
454 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15298546 CAAAATCTTGTGCACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
519 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * * * *
15298611 TCACGTCTACCAAGTTTGGCTCCAAAAATACTTGCAAAAAAATTTTAAAAAATCCCGAACTGCAA
584 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
** * *
15298676 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCT
649 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * ** * **
15298741 TAAGGGACAATTGTAAGAATTTACAAGCCATAAAAATGGCATTCGCACACAGAAATAAGAAGACA
714 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
15298806 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAAG-GT
779 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGT
*
15298870 AGTGCCCGCCCTTCCCGGCCGCCCACTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCAT
843 AGTGCCCG-------C--CCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** *
15298932 TCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGTAGTAGGTTCGGTAGCATGTAGAGGGGGA
1 TCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * * *
15298997 CCCGGCCGATCCCCGGCTTGTGCATCCAGCCCCTCTGGTCGGCTGAGCGCCCGCACACTTGTTTC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
15299062 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-AACGCAAACAGAGTTCATTCCCAGTCG
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATACGGAGTTCATTCCCAGTCT
* * * * * *
15299126 AACATCGGACCGGATCGAGGGTTACGGCAGCACATGCT-GGCTCAGGCATGTGCTGGTGCCGCAT
194 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
15299190 TTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTT
259 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
*
15299255 CGGCGATC-GGGGGGCCTGAGGGGGTGTGTGCACATGATGTGTGCACATGATGTGCGATGGGTGC
324 CGACGATCGGGGGGGCC-G-GGGGG-GTGTG--C---------GCACATGATGTGCGATGGGTGC
* *
15299319 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTGACACCCCCTTAA
375 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15299384 AGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACAGTT
440 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CT
* * * * * *
15299449 TTTTTGAAATGGTCACAGAATCTTGTGCAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATACAA
504 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
15299514 ACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAA
569 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * *
15299579 AATCATGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
634 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * **
15299644 CTTCACGTGAAGGCCTCAGGGAACATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACAC
699 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
15299709 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTC
764 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
15299774 TCTCTGGTCGACGTGGTGCCCGCCCACCCGCCCTTCCGCTCGTTTCATCGGTCGGCTTAGGCATA
829 TCTCTGGCCGGCGTAGT----G----CCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
**
15299839 CGTTGTTCAT
882 CGGAGTTCAT
* ** *
15299849 TCCCAGTCTAACATCAGACTGGACTGAGGGTTGCGGTC-GTAGGATC-AGCAGCACGTAGAGGGG
1 TCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGG-CAGCAGGATCGA-CAGCACGTAGAGGGG
* *** * *
15299912 GACCCGACCGATCCTCGGCTTGTTAATCCCGCCCCTTTAGCCGGCTGAGCGCCCGCACGCTCGTT
63 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
15299977 TTGTGGGTTGACTTACGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC
128 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
15300023 T--GA-C-TA--A-ACCGAGGGTTGCGGCAGCACATCCTGGGCTCGGGCATGTGCTCGTGCCGCA
193 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
15300081 TTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACAGGCAGCATTGGGGTT
258 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
** ** *
15300146 CCGGTGATC-GGGGGGCCGGGGGGGTGTTTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
323 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
15300210 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGA
388 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
15300275 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
453 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
15300340 AC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGG
518 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
15300404 ATCATGTCTACTAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGTA
583 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA
** * * *
15300469 AAAAGTTTTGAAAATCGCGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
648 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
15300534 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
713 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
15300599 GTACCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCTGTCTCTCTGGTCGGCGT
778 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
*
15300663 AGTGCCCGCCCGCCCACCTGTCCACCCGCTTGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGT
843 AGT--------G--C-CC-G-----CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
15300728 TCAT
888 TCAT
* ** ** * * *
15300732 TCCCAGTCCAAGATTGGACCAGACTGAGGGTTGCAACAGCAGGATCGATAGCACATAGAGGCGGA
1 TCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
*
15300797 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
15300862 ATGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * ** * **
15300927 AGATCAAACCAGACCAAAGGTTGCGATAGCACATGCTGGGCTTGGGCATGTGCTGGTGCTACATT
195 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * * *
15300992 TGTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGACGGCATTGTGGTTCC
260 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * *
15301057 GGCAATCGGGGGGGCCGGGGGGGTTTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
325 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15301122 ATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATT
390 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
15301186 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
455 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
15301251 AAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTCCATACCAA-AAAAATACAAGGAT
520 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
15301315 CACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGCAAA
585 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
** * ** *
15301380 AAGTTTTGAAAATCATGAAAAATAGAAAACGAGT-GTCTTGCTGTGAAACTTCACGTGAAGCCTT
650 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
15301444 AAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCATGCAGAAATATGAAGATGT
715 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
15301509 GCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCTGACGTAG
780 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
15301574 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCAT
845 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * *
15301621 TCCCAGTCTAAGATCAGACCATATCAAGGGTTGTGGCAATAGGATCGACAGCATGCAGAGGGGGA
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* *
15301686 CCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** * *
15301751 GTGGGTTGACTTAGGCATACGGAGTAAATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
15301816 AGATCAGACCAGATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATT
195 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * ** * * *
15301881 TTTCTTTGCCAAGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGACAGCATTAGGGTTCC
260 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
15301946 GACGATCGGGGGGGCCGAGGGGGTTGTGCGCACATGATGTGCGATGAGTGCTGGAACTTGGCCCT
325 GACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
15302011 TATACTAGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAGAGCATTTGAGA
389 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGA
* * *
15302076 TTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
453 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
15302141 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
518 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
15302206 ATCACGTCTACCAA-TTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACA
583 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA
** * * *
15302270 AAAAGTTTTGAAAATCATGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGC
648 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
15302335 CTAAGGGACCATTGTATGAATTTTCCAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
713 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
15302400 GTGCCTAAACGCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGT
778 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* ***
15302465 AGTGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTGG-TTAGGCATAAAAAGTTCAT
843 AGT----GCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * ** **
15302521 TCCTAGTCTAAGATCAGATCGGATCGAGTTTTGTGGCAGCACAATCGGTAGCACGTAGAGGGGGA
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * * *
15302586 -CCTAGCCGATCCCCGGCTTGCGCATCTCACCCCTCTGGCTGGCTGAGCGCCCGCATGCTCATTT
65 CCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
15302650 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
129 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
15302715 AAGATCGGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCAT
194 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
*
15302780 TTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGAACCTGACCGACGGCATTGGGGTTC
259 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * ** **
15302834 CGACGATCGGTGGGGCCAGAGGGGGTGTTTGCACATGATGTGCGATGGGTGCTGGTACTTCACCC
324 CGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
** *
15302899 TTATATTCACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
388 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
15302964 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT----T-G--
453 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
15303022 -CAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGTGGATGCCAACAAAAATACAAGG
518 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * * * *
15303086 ATCACGTCTACCAAGTTTAGGGAAAAAACTCCTTCCAAAAAAAGTTTAAAAAATCACGAACCGAA
583 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA
* * *
15303151 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTACCATGAAACTTCACATGAAGGC
648 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15303216 TTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGCAGTAATATGAAGAT
713 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
15303281 GTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCCGACCGGCGT
778 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * ** *
15303346 AGTGCCTGCCCACTCATTTCGTCGGTTGGCTTAGATATACTGAGTTCAT
843 AGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
15303395 TCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTGCGACAGCTGGATCGGCAGCACGCAGAGGGGG
1 TCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* * ** * * ** * *
15303459 ACCCGGCCAATCCCCGGCTTGCTTATCCTGCCCCGCTGGCCTACTGAGCGCCTGCACGCTCGTTC
64 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
15303524 CGTGGGTTGACTTACGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
129 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
15303589 AAGATCTGACCAGACTGAGGGTTGCGACAGCACATCCTGGGCTCAGGCATGTGCTGGTGCCGCAT
194 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * *
15303654 TTTTCTTCGTCGGGGCACCCTCACCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTC
259 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
*
15303719 CGACGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGCACATGATGTGCGATGGGTGCT
324 CGACGATCGGGGGGGCCGGGGGGGTGT--G--C---------GCACATGATGTGCGATGGGTGCT
* *
15303783 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAA
376 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15303848 GAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
441 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
15303913 TTTCAAATGGTCACAGAATCTTGTGCAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
506 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
15303978 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAA
571 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAA
* *
15304042 ATCACGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
635 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * **
15304107 TTCATGTGAAGGCTTCAGGGAACATTGTATGAATCTACAAGCCATAAAAATGGCACTGTTACAT-
700 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-T-TGGCATG
*
15304171 -AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
763 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * * * * *
15304235 CTCTCTAACCGACGTAATGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATATGA
828 CTCTCTGGCCGGCGT-A-----G--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
15304300 AGTTCAT
885 AGTTCAT
* * * * *
15304307 TCCCAGTCTAAGAT-TGAACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGG
1 TCCCAGTCTAAGATCAG-ACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* *** * * * * *
15304371 ACCCGACCGATCCTCGGCTTGCGCATCCTTTCCCTTTGGCCGACTAAGCGCCCGCACGCTTGTTC
64 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
15304436 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---CA-A---AG---A-T--C-G---
129 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
**
15304482 --GAT-----CAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
194 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
15304540 TTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCAGAGAAGCTGACCGGCGGCATTGGGGTTC
259 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
15304605 TGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGCGCTGGTACTTGGCCCT
324 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** * * *
15304670 TATATTGGTGCCCTATCCCTCATCAAACCCCGAGAACTCAGACCCCATTAAAGAGCATTTGAGAT
389 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
15304735 TTTACAGGTTTGTTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
454 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
15304800 CAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTACATGCGAAC-AAAATAAAAGGA
519 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * *
15304864 TCACGTCTACCAAGTTTGGGGAAAAAAATCCTTCC-AAAAATATTTTAAAAAATCTCAAACCGCA
584 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCA
* * *
15304928 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTTAAACTTCACGTGAAGGC
648 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15304993 TTAAGGGACCATTGTATGAATTTACAAG-C-TAGAAAATGGCATTGGCACGCAAAAATATGAAGA
713 TTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAATATGAAGA
* * ** *
15305056 TGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCATATCCAGTCTCTCTGGCCGGCG
777 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
15305121 TAGTGCCCGCCCGTCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT
842 TAGT----G--C--CCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * ** * * * *
15305183 TCCCAATCCAAGATCGGACCGGACTGAGGGTTGTGATAGTAGGATCAACAACACATAGA-GGGGA
1 TCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * * *
15305247 CCCTG-CCAACCCCCGACTTGCGCATCCCGCCCCTCTAGCTGGCTTATTGCCTGCCCACCCGCCC
65 CCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA--G-C-G----CCCG--C
* * *
15305311 ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG-ATCGGACCGG
119 A--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A-C-G
* * * ** *
15305375 ACCGAGGGTT-ATGGTAGCAAGATCGACAGCATGCAAAGGGGGACCCAACTGATCCTTGGCTTG-
177 ---GA--GTTCAT--T-CCCAG-TCTA-AG-AT-C--A----GA-CC-A--GA-CCGAGGGTTGC
* * * ** * * * * *
15305438 TGCATCCCA--C--CCCTTGAGCATGTGCTGGTGCCACATTTTTATTCGCCGGGGCACCAT---C
219 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * *
15305496 ---G---C-T-GGAGAACCTGACCGGTGGCATTAGGGTTCCGACAATC-GGGGGGCC-GGGGGGT
284 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* *
15305551 GTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
349 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
15305616 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
414 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
15305681 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTT
479 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
15305746 TCGCTGAATTTTTCTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
544 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** * * *
15305811 AACTTCTTTCAAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
609 AAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
15305876 TGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTAC
673 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
15305941 AAGCAACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
738 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** *
15306006 TCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCAAAGTGCCCGCCCGCTCGTTTCGTCTG
803 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGG
*
15306070 TTGGCTTAGGCATACGGAGTTCAC
868 TTGGCTTAGGCATACGGAGTTCAT
* * * * * *
15306094 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCATGATCGACATCACATAGAGGGGGA
1 TCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* ** * * * * *
15306159 CCCGACCGATCTCCAACTTGCGCATCCCGCCCCTCTAGCCGGCTAAGTGCCTGCACGTTCGTTTC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* **
15306224 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAAAGTTCATTCCCAGTCTA
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
15306289 AGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
195 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
15306354 TTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCTGCGGCATTGGGGTTTC
260 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * * * *
15306419 GATGATC--GGGGGACGGGGGGGTGTGCG-TCATGATATGCGATCGGTGTTGGTACTTGGCCCTT
325 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
15306481 ATATTGGACCCCTATCCCTCATCAAACCTCCAGAACTCACACCCGCTTAAAGAGCATTTGAGATT
390 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
15306546 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
455 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
15306611 AAAATCCTGTACACTTTGAGTTTTTCGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
520 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
15306676 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACC-AAAA
585 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * *
15306740 AAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGCGAAGGCTT
650 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *** *
15306805 AAGGGACCATTATATGGATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATTAAGATGT
715 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * ** *
15306870 GCCTAAACCCACTTGCCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTTTGGTTGACGTAG
780 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
15306935 TGCCCGCCCGCCCGCTCACCCACTCGTTTTGTTGGTAGGCTTAGGCATATGGAGTTCAT
845 T----GCCCGCCCG--------CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** *
15306994 TCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGA
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * * * * * *
15307059 CCCAACCAATCCTCGGATTGCACATCCTGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTCGTTCC
65 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * *
15307124 ATAGGTTGACTTAGACATACGGAGTTAATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTA
130 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
15307189 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATCCTGGGCTCGGGCATGTGCTGGTGCCGCATT
195 AGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * **
15307254 TTTCTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTGACCGGCACCATTGGCGGTTC
260 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG-GGTTC
* **
15307318 CGACGATCGAGGGGGCCGGGGGGGTGTGTTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
324 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15307383 TATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGAT
389 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15307448 TTTACAAGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
454 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
15307513 CAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGA
519 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * ** * * **
15307578 TCACGTCTACCAGGTTTGGGGCCAAAACACCTTTTGAAAAAATTATAAAAAATCCCAAACCATAA
584 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* * *
15307643 AAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGCCT
649 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * *
15307708 TAAGGGACGATTGCATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAAAAATATGAAGAAG
714 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
15307773 TGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATG
779 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
**
15307838 GTGCCCGCCCGCCCGTCCGCTCGTTTCGT-GGATTGGCTTAGGCATACAAAGTTCAT
844 GT----GCCCG--C--CCGCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCAT
* * *
15307894 TCCCAGTCT-AG----GACCGGATCAAGGGTTGCGGCAGCAGGATCAGTA-A-CACGCAGAGGGG
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATC-G-ACAGCACGTAGAGGGG
* * * * *
15307952 GACTC-AGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTTGT
63 GACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
15308016 TTCATGGGTTGACTTAGGCATAAGGTGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
127 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * * * * *
15308081 CTAAGATCGGACCAAACTGAGGGTTGTGGCAACACATGCTGGGCTCGAGCTTATACTGGTGCCGT
192 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
15308146 ATTTTTCTTCGTCGTGGCACCATCGTCGGAGGATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
257 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
15308211 TCCGACGATCGGAGGGGCCGGGGGGGTATGCGCACATGTTGTGAGATGGGTGCTGGTACTTGGCC
322 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
15308276 CTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
387 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
15308341 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
452 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
15308406 CACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
517 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
15308471 GATCACATCTACCAAGTTTGGGGTCAAAAATCCTTTCGAAAAAATTTTAAAAAAATCCCGAACCA
582 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCG
* * * *
15308536 TAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
646 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
15308601 GCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAG
711 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
15308666 ATGTACCTAAACCCACCAACCATCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGAC
776 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
15308731 ATAGTGCCCGCCTTCCCACCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
841 GTAGTGCCCG------C-CC-G--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * *
15308794 TCCCAGTCTAAGATTGGACCAAACCGA-GGTTGCGGCAGCAAGATC-AGCAGCATGCAGAGGGGG
1 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGG
* * * * * *
15308857 ACCC-AGTCGATCCCCGGTTTGCGCATCCCGCCCCTCTGGCCTGCTGAGTGCCCGCATGCTTGTT
64 ACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
15308921 TCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTC
128 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * **
15308986 TAAGATCAGATCGGGCTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATA
193 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * ** * * *
15309051 TTTTGCTTTGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGATCGGCAGCATTGAGGTT
258 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
15309116 CCAACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATG-GTGATGGGTGCTGGTACTTGGCCC
323 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
15309180 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
388 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15309245 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACCTTTTTCAAATGGTC
453 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15309310 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAGTACAAGG
518 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
15309375 ATGACGTCTACCAAGTTTGGGCCCAAAACTCCATT-CGAACAAATTTTAAAAAATCCCGAACTGT
583 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGC
** * * * *
15309439 AAAAAGTTTTGAAGATCGTCAAAAATAGAAAACGAGTCATCTTGCCATGAATCTTCACGTGAAGG
647 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
15309504 CTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGA
712 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
15309569 TGTACCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCG
777 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
15309634 TAGTGCCCGCTCTCTCACCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
842 TAGTGCCCG--------CCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
15309696 TCCCAGTCTAAGATC-GAACCAGACAGAGGGTTGCAGCAGCAGGATCGACAGCATGTAGAAGGGG
1 TCCCAGTCTAAGATCAG-ACCAGAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGG
* * * * * * * * * *
15309760 ACCCGATCGATCCTCGACTTTCGCATCCCGCCCCTCTGGCTGGTTGTGCGCCTGCATGCTTGTTT
64 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
15309825 CCTAGGTTGACATAGGCATTCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
129 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
15309890 AAGATC-GCACCAGTCCGAGGGTTACGGTAGCACATGCTGGGCTAAGGCATGTGCTGGTGCCGCA
194 AAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
15309954 TATTTCTTC-ACAGGGCACCATCACCGGAGGATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
258 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * * *
15310018 CCGATGATCGGAGGGGCC-AGGGGGTGTGCGCACATGATGTGAGATAGGTGCAGGTGCTTGGCCC
323 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
15310082 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
388 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
** *
15310147 TTTTACAGGTTTGCTGCC-GTAAACATTAAAATGTCTGAAATGGGGACAC--TTTT----T--TC
453 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * *
15310203 ACAAAATCTTGTACACTTCGATTTTTTAGCTAAATTTTTTTGTGCTTGCCAATAAAAATAAAAGG
518 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* *
15310268 ATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCCGAACTGC
583 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGC
* ** * *
15310333 AGAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
647 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
15310398 CTTAAGGGACCATTGTTTGAATTTACAA-CCATAAAAATGGCATTGGCATGCAGAAAAATGAAGA
712 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
*
15310462 TGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGC
777 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
15310500 GTAGGCATAC
Statistics
Matches: 10063, Mismatches: 1195, Indels: 632
0.85 0.10 0.05
Matches are distributed among these distances:
866 1 0.00
868 1 0.00
870 4 0.00
871 4 0.00
872 91 0.01
873 162 0.02
874 455 0.05
875 78 0.01
876 347 0.03
877 29 0.00
878 147 0.01
879 49 0.00
880 75 0.01
881 220 0.02
882 6 0.00
883 189 0.02
884 9 0.00
885 42 0.00
886 117 0.01
887 216 0.02
888 119 0.01
889 715 0.07
890 114 0.01
891 55 0.01
892 326 0.03
893 342 0.03
894 101 0.01
895 514 0.05
896 380 0.04
897 13 0.00
898 6 0.00
899 45 0.00
900 666 0.07
901 73 0.01
902 448 0.04
903 730 0.07
904 852 0.08
905 212 0.02
906 12 0.00
907 3 0.00
908 128 0.01
909 339 0.03
910 126 0.01
911 83 0.01
912 218 0.02
913 3 0.00
914 1 0.00
915 7 0.00
917 318 0.03
918 304 0.03
919 1 0.00
921 217 0.02
922 45 0.00
923 163 0.02
924 77 0.01
925 2 0.00
926 4 0.00
928 1 0.00
931 1 0.00
934 41 0.00
935 1 0.00
936 2 0.00
938 6 0.00
939 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
TCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
Found at i:15302694 original size:26 final size:26
Alignment explanation
Indices: 15302665--15302717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15302655 GTTGACTTAG
*
15302665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15302691 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15302717 G
1 G
15302718 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15303568 original size:26 final size:26
Alignment explanation
Indices: 15303539--15303591 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15303529 GTTGACTTAC
*
15303539 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15303565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15303591 G
1 G
15303592 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15303763 original size:13 final size:13
Alignment explanation
Indices: 15303742--15303773 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15303732 GCCGGGGGGG
15303742 TGTGCGCACATGA
1 TGTGCGCACATGA
*
15303755 TGTGTGCACATGA
1 TGTGCGCACATGA
15303768 TGTGCG
1 TGTGCG
15303774 ATGGGTGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (13 bp):
TGTGCGCACATGA
Found at i:15307180 original size:26 final size:26
Alignment explanation
Indices: 15307141--15307190 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15307131 GACTTAGACA
15307141 TACGGAGTTAATTCCCAGTCTAAGCT
1 TACGGAGTTAATTCCCAGTCTAAGCT
*
15307167 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
15307191 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCT
Found at i:15307629 original size:903 final size:903
Alignment explanation
Indices: 15304451--15310499 Score: 7488
Period size: 903 Copynumber: 6.7 Consensus size: 903
15304441 GTTGACTTAG
* * **
15304451 GCATACGGAGTTCATTCCCAGTCAAAGATCGGATCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15304516 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
15304581 AGCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** * *
15304646 CGATGGGCGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCCCGAGAACTCAG
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15304711 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCTTTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15304776 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
15304841 TACATGCGAAC-AAAATAAAAGGATCACGTCTACCAAGTTTGGGGAAAAAAATCC-TTCCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
15304904 TATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 -ATTTTAAAAAATCCCAAACC-AAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15304969 TGCCGTTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C-TAGAAAATGG
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGG
* *
15305032 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTG
582 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
15305097 CATATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGTTTGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTG
* * * * * * * *
15305162 GCTTAGGCATATGGAGTTCATTCCCAATCCAAGATCGGACCGGACTGAGGGTTG-TGATAGTAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCAGG
* * * ** * * * *
15305226 ATCAACAACACATAGA-GGGGACCCTGCC-AACCCCCGACTTGCGCATCCCGCCCCTCTAGCTGG
776 ATCGACAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
15305289 CTTATTGCCTGCCCACCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
841 C-TA-AG--TG----CCCG--CA--CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
*
15305354 CCCAATCTAA
894 CCCAGTCTAA
* * *
15305364 G-ATCGGACCGGACCGAGGGTT-ATGGTAGCAAGATCGACAGCATGCAAAGGGGGACCCAACTGA
1 GCAT---A-C-G---GA--GTTCAT--T-CCCAG-TCTA-AG-AT-C------GGA-CC-A--GA
** * * * * ** * * * *
15305427 TCCTTGGCTTG-TGCATCCCA--C--CCCTTGAGCATGTGCTGGTGCCACATTTTTATTCGCCGG
39 -CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * *
15305487 GGCACCA---TC---G---C-T-GGAGAACCTGACCGGTGGCATTAGGGTTCCGACAATCGGGGG
103 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* *
15305541 GCC-GGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
168 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
15305605 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15305670 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
15305735 CTTTGAGTTTTTCGCTGAATTTTTCTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15305800 TTTGGGGCCAAAACTTCTTTCAAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
428 TTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCAAACC-AAAAAAGTTTCAAAAA
* * * *
15305865 TCATGAAAAATTGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTG
491 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
15305930 TATGAATTTACAAGCAACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCAC
*
15305995 CTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCAAAGT----GCCCG--
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCC
* * *
15306053 C-C-CG--C--TCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGA
686 CGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * *
15306112 CCAGACTGAGGGTTACAGTAGCATGATCGACATCACATAGAGGGGGACCCGACCGAT-CTCCAAC
751 CCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCAACCGATCCTCCGAC
* * * *
15306176 TTGCGCATCCCGCCCCTCTAGCCGGCTAAGTGCCTGCACGTTCGTTTCGTGGGTTGACTTAGGCA
816 TTGCGCATCCCGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
15306241 TACGGAGTTCATTCCCAGTCTAA
881 TACGGAGTTCATTCCCAGTCTAA
* ** * * *
15306264 GCGTACAAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15306329 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
15306394 ACCTGACCTGCGGCATTGGGGTTTCGATGATC-GGGGGACGGGGGGGTGTGCG-TCATGATATGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
15306457 GATCGGTGTTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCCAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15306522 CCCGCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15306587 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTCGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15306652 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
15306717 TTTTAAAAAATCCCAAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGC
456 TTTTAAAAAATCCCAAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
15306782 CATGAAACTTCACGCGAAGGCTTAAGGGACCATTATATGGATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * * *
15306847 GGCACATAGAAATATTAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCATGCGCA
586 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * * ** * * *
15306912 TCCCGTCTCTTTGGTTGACGTAGTGCCCGCCCGCCCGCTCACCCACTCGTTTTGTTGGTAGGCTT
651 TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTT
* **
15306977 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCAGCAGCAGGATCGA
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * *
15307042 CAGCACGTAGAGGGGGACCCAACCAATCCTCGGA-TTGCACATCCTGCCCCTCTGGCCGGCTAAG
781 CAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
* * * *
15307106 TGCCCGCACGCTCGTTCCATAGGTTGACTTAGACATACGGAGTTAATTCCCAGTCTAA
846 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15307164 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15307229 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** **
15307293 ACCTGACCGGCACCATTGGCGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGTTCACATGATGT
131 ACCTGACCGGCGGCATTGG-GGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
*
15307358 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15307423 CACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15307488 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15307553 GTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACACCTTTTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
15307618 AATTATAAAAAATCCCAAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCAAACCA-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15307683 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACGATTGCATGAATTTACAAGCAATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15307748 ATTGGCATGCAAAAATATGAAGAAGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTAC
583 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15307813 GCATCCCGTCTCTCTGGCCGGCATGGTGCCCGCCCGCCCG-T---CCGCTCGTTTCGT-GGATTG
648 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTCGTCGG-TTG
** * * * *
15307873 GCTTAGGCATACAAAGTTCATTCCCAGTCT---A--GGACCGGATCAAGGGTTGCGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGA
* * * *
15307933 TCAGTA-A-CACGCAGAGGGGGACTCAGCCGATCC-CCGACTTGCGCATCCCGCCCCTCTGGCTG
777 TC-G-ACAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
15307995 GCTGAGCGCCCGCACGTTTGTTTCATGGGTTGACTTAGGCATAAGGTGTTCATTCCCAGTCTAA
840 GCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15308059 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGTGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
15308124 CTCGAGCTTATACTGGTGCCGTATTTTTCTTCGTCGTGGCACCATCGTCGGAGGATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
15308189 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTATGCGCACATGTTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15308254 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15308319 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15308384 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15308449 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAAATCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
15308514 ATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCT
455 ATTTT-AAAAAATCCCAAACCA-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15308579 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15308644 ATTGGCACGCAAAAATATGAAGATGTACCTAAACCCACCAACCATCCTATCGATCCACGGCTTGT
583 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
15308709 GCATCCCATCTCTCTGGCCGACATAGTGCCCGCCTTCCCAC-CTGCCCGTTCGTTTCGTCGGTTG
648 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTC-GCCCGTTCGTTTCGTCGGTTG
* * * * *
15308773 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGA-GGTTGCGGCAGCAAGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGA
* * ** ** *
15308837 TC-AGCAGCATGCAGAGGGGGACCCAGTCGATCC-CCGGTTTGCGCATCCCGCCCCTCTGGCCTG
777 TCGA-CAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
15308900 CTGAGTGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAA
841 CTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15308963 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * **
15309028 CTCGGGCATGTGCTGGTGCCATATTTTGCTTTGTCGGGGCACCATCG-CTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * *
15309092 AACCTGATCGGCAGCATTGAGGTTCCAACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATG-
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
*
15309156 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15309221 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15309286 TGGGGGCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15309351 ATGCATGCCAACAAAAGTACAAGGATGACGTCTACCAAGTTTGGGCCCAAAACTCCATTCGAACA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** ** * * *
15309416 AATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAGATCGTCAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCAAAC-CAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15309481 TGCCATGAATCTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15309546 ATTGGCATGTAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACAGCTTGC
583 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
15309611 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCTCTCACCCGCCCGTTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGG
* *
15309676 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACAGAGGGTTGCAGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGAT
* * * * * *
15309741 CGACAGCATGTAGAAGGGGACCCGATCGATCCT-CGACTTTCGCATCCCGCCCCTCTGGCTGG-T
778 CGACAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
15309804 -TGTGCGCCTGCATGCTTGTTTCCTAGGTTGACATAGGCATTCGGAGTTCATTCCCAGTCTAA
843 AAGTGC-CC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15309866 GCATACGGAGTTCATTCCCAGTCTAAGATCGCACCAGTCCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * ** *
15309931 CTAAGGCATGTGCTGGTGCCGCATATTTCTTC-ACAGGGCACCATCACCGGAGGATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
15309995 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGAGGGGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
15310059 AGATAGGTGCAGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
15310124 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GTAAACATTAAAATGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15310188 GGGGACAC--TTTT----T--TCACAAAATCTTGTACACTTCGATTTTTTAGCTAAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15310245 TGCTTGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * ** * *
15310310 ATTTTAAAAAAATCCCGAACTGC-AGAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTC
455 ATTTT-AAAAAATCCCAAAC--CAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15310374 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAA-CCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15310438 CATTGGCATGCAGAAAA-ATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGC
582 CATTGGCACGCA-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
15310500 GTAGGCATAC
Statistics
Matches: 4486, Mismatches: 540, Indels: 240
0.85 0.10 0.05
Matches are distributed among these distances:
874 7 0.00
875 8 0.00
877 2 0.00
878 1 0.00
879 41 0.01
882 1 0.00
885 2 0.00
886 2 0.00
887 160 0.04
888 45 0.01
889 256 0.06
890 44 0.01
891 3 0.00
892 7 0.00
893 166 0.04
894 106 0.02
895 511 0.11
896 236 0.05
897 3 0.00
898 2 0.00
899 36 0.01
900 417 0.09
901 58 0.01
902 450 0.10
903 727 0.16
904 471 0.10
905 8 0.00
908 2 0.00
910 1 0.00
911 81 0.02
912 43 0.01
913 3 0.00
915 3 0.00
916 2 0.00
917 2 0.00
919 5 0.00
920 2 0.00
921 212 0.05
922 47 0.01
923 162 0.04
924 80 0.02
925 5 0.00
926 2 0.00
927 2 0.00
928 2 0.00
931 1 0.00
934 43 0.01
935 1 0.00
936 2 0.00
938 6 0.00
939 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCAAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
CAGCACGTAGAGGGGGACCCAACCGATCCTCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAG
TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15308063 original size:26 final size:26
Alignment explanation
Indices: 15308033--15308085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15308023 GTTGACTTAG
**
15308033 GCATAAGGTGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
*
15308059 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
15308085 G
1 G
15308086 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:15308966 original size:26 final size:26
Alignment explanation
Indices: 15308937--15308989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15308927 GTTGACTTAG
15308937 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* * *
15308963 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15308989 G
1 G
15308990 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15309869 original size:26 final size:26
Alignment explanation
Indices: 15309840--15309892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15309830 GTTGACATAG
*
15309840 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15309866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15309892 G
1 G
15309893 ATCGCACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15311586 original size:26 final size:26
Alignment explanation
Indices: 15311545--15311602 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
15311535 CGTGGGTTGA
15311545 CTAAGGCATACAGAGTTCATTCCCAGT
1 CTAA-GCATACAGAGTTCATTCCCAGT
* *
15311572 CTAAGCATACGGAGTTCATTCCTAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
15311598 CTAAG
1 CTAAG
15311603 ATCGGATCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:15312473 original size:26 final size:26
Alignment explanation
Indices: 15312443--15312495 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15312433 GTTAACTTAG
15312443 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
15312469 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15312495 G
1 G
15312496 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15314248 original size:26 final size:26
Alignment explanation
Indices: 15314218--15314270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15314208 GTTAACTTAG
15314218 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
15314244 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15314270 G
1 G
15314271 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Done.