Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 97 of 190
Found at i:15314628 original size:896 final size:899
Alignment explanation
Indices: 15313345--15314983 Score: 2448
Period size: 896 Copynumber: 1.8 Consensus size: 899
15313335 GTTGACTTAG
* * *
15313345 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGCACTGAGGGTTGCGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAGGGTTGCGACAGCACATGCTAGG
* * * * **
15313410 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCACCATCATCGGATCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGAGGCACCATCATCGGAGCATCACCGGAGA
* * * * * * *
15313475 ACCTGTCCGACGACATTGGGGTTCTGACAATCGGAGGGGTTGGGGGCGGTGTGCGCACATGTTGT
131 ACCTGACAGACGACAATGGGGTTCCGACAATC-GAGGGGATCGGGGCGGTGTGCGCACATGATGT
* * * * * * * *
15313540 GCGATGGTTACTGGTGCTTTGCGCTTATATTGGCCCCCTATCGCTCATCAATCCTCGAGAACTCA
195 GCGATGGGTACTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
15313605 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAAA
* * ** *
15313670 TGGGGACATTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTT
** * *
15313735 GTTTATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATACTTCC-AAAA
* * * * * * * *
15313800 AA-TCTTACAAAATCTCGAATCGCAGAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTC
454 AATTCTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAAGAAAAATAGAAAACGAGTCATC
15313864 TTGCCATGA-AACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 TTGCCATGATAA-TTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15313928 GCATTGGCATGCAGAAATAT-GAGGATGTGCCTAAACCCTCCTACCACCCTAT-GATCCACGGCA
583 GCATTGGCACGCAGAAATATGGA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCA
* * * * **
15313991 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCTGCCCTCCTGCTCGTTTCGTCGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGC
* *
15314056 TTGGGCTTACGGAGTTCATTCCCAGTCTAAGATCGGCCAGACCAAGGGTTGGGGCAGTAGGATCG
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCAGACCAAGGGTTGGGGCAGTAGGATCG
15314121 ATAGCATGCAGAGGGGGACCCAAACGATCCCCGACTTGTGCATCCCTCCCCTCTGGCCGGCTGAA
777 ATAGCATGCAGAGGGGGACCCAAACGATCCCCGACTTGTGCATCCCTCCCCTCTGGCCGGCTGAA
15314186 CGCCCACACGCACGTTTCATGGGTTAACTTAGGCATACGAAATTCATTCCCAGTCTAA
842 CGCCCACACGCACGTTTCATGGGTTAACTTAGGCATACGAAATTCATTCCCAGTCTAA
* * *
15314244 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GCACCGAGGGTTGCGACAGCACATGCTAG
* *
15314308 GCTTGGGCATGTGCTGGTGCCGCATTTTTCCTCACC-AGGGCACCATCGTCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGA-GGCACCATCATCGGAGCATCACCGGA
* * *
15314372 GAACCTGACAGGCGGCAATGGGGTTCCGACAATC-AGGGGATCGGGG-GGTGTGTGCACATGATG
129 GAACCTGACAGACGACAATGGGGTTCCGACAATCGAGGGGATCGGGGCGGTGTGCGCACATGATG
* *
15314435 TGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTT
194 TGCGATGGGTACTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
15314500 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTATCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAA
*
15314565 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTT
324 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTT
* * * *
15314630 TGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTTCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATACTTCCAAAA
* *
15314695 AATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAAGAAAAATAGAAAATGAGTCATC
454 AATTCTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAAGAAAAATAGAAAACGAGTCATC
* * *
15314760 TTGCCATGATAATTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGT
519 TTGCCATGATAATTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15314825 CATTGGCACGCGGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCACGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATG
15314890 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* *
15314955 AGGCATACGGAGTTCCTTCCCAGTGTAAG
714 AGGCATACGGAGTTCATTCCCAGTCTAAG
15314984 CATACAGATT
Statistics
Matches: 654, Mismatches: 80, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
895 6 0.01
896 399 0.61
897 109 0.17
898 2 0.00
899 138 0.21
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAGGGTTGCGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGAGGCACCATCATCGGAGCATCACCGGAGA
ACCTGACAGACGACAATGGGGTTCCGACAATCGAGGGGATCGGGGCGGTGTGCGCACATGATGTG
CGATGGGTACTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTATCTGAAAT
GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATACTTCCAAAAAA
TTCTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAAGAAAAATAGAAAACGAGTCATCTT
GCCATGATAATTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCAGACCAAGGGTTGGGGCAGTAGGATCGATAG
CATGCAGAGGGGGACCCAAACGATCCCCGACTTGTGCATCCCTCCCCTCTGGCCGGCTGAACGCC
CACACGCACGTTTCATGGGTTAACTTAGGCATACGAAATTCATTCCCAGTCTAA
Found at i:15315000 original size:26 final size:26
Alignment explanation
Indices: 15314957--15315009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15314947 GTTGGCTTAG
* * *
15314957 GCATACGGAGTTCCTTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15314983 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15315009 G
1 G
15315010 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15315633 original size:741 final size:739
Alignment explanation
Indices: 15314213--15315724 Score: 2273
Period size: 741 Copynumber: 2.0 Consensus size: 739
15314203 CATGGGTTAA
* * ** *
15314213 CTTAGGCATACGAAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * *
15314278 CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCATTTTTCCTCAC
66 CGGACAGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGATGGTGCCACATTTTTCCTCAC
** * *
15314343 CAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGGCAATGGGGTTCCGACAATCAG
131 CAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACAGACGGCAATGGGGTTCCAACAATCAG
*
15314408 GGGATCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCC
196 GGGACCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCC
* * *
15314473 CTATCCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTAG
* *
15314538 CTGCCAGTAGCGATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
326 CTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
15314603 CACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCA
391 CACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
15314668 AGTTTGGGGCCAAAACTACTTTCAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAA
456 AATTTGGGGCCAAAAATACTTCCAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
* *
15314733 ATCAAGAAAAATAGAAAATGAGTCATCTTGCCATGATAATTCACGTGAAGGCTTAAGGGACTATT
521 ATCAAGAAAAATAGAAAACGAGTCATCTTGCCATGATAATTCACGTGAAGGCTTAAGGGACCATT
* * * * *
15314798 GTATGAATTTACAAGCCATAAAAATGTCATTGGCACGCGGAAATATGGAGATGTGCCTAAACCCA
586 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGCCTAAACCCA
* * * * *
15314863 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGC
651 CCAACCACCCTACCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGACATAGTGCCCACCCGC
*
15314928 CCGCCCACTCGTTTCGTCGGTTGG
716 CCGCCCACTCGTTTCGTCAGTTGG
* * *
15314952 CTTAGGCATACGGAGTTCCTTCCCAGTGTAAGCATACAGATTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
*
15315017 CGGACAGAGGGTTGCGACAGCACATGCT-GGACTCAGGCATGT-ATAGGTGCCACATTTTTCTTC
66 CGGACAGAGGGTTGCGACAGCACATGCTAGG-CTCAGGCATGTGAT-GGTGCCACATTTTTCCTC
* * * * * * *
15315080 GCCGGGGCACCATCACCGGATCATCGCCGGAGAACCTGTTC-GACGGCATTGGGGTTCCAACGAT
129 ACCAGGGCACCATCACCGGAGCATCACCGGAGAACCTG-ACAGACGGCAATGGGGTTCCAACAAT
* * * * * *
15315144 CGGGGGGGCCGGGGGG-GTGTAGGCACATGATGTGCGATGGTTGCTGGTGCTTGGCGCTTATATT
193 C-AGGGGACCGGGGGGTGTGT--GCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATT
* **
15315208 GGCCCCCTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACA
255 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACA
15315273 GGTTAGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
320 GGTTAGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
*
15315338 CTTGTACACTTCGA-CTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
385 CTTGTACACTTCGAGC-TTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
15315402 TCTACCAAATTTGGGGCCAAAAATCCTTCCGAAAGAA-TTGTAAAAAATCCCAAACCTCAAAAAG
449 TCTACCAAATTTGGGGCCAAAAATACTTCC-AAAAAATTTGTAAAAAATCCCAAACCGCAAAAAG
* *
15315466 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA-AACTTCACGTGAAGGCTTAA
513 TTTCAAAAATCAAGAAAAATAGAAAACGAGTCATCTTGCCATGATAA-TTCACGTGAAGGCTTAA
15315530 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGC
577 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGC
*
15315595 CTAAACCCACCAACCAGCCTACCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGACATAGTG
642 CTAAACCCACCAACCACCCTACCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGACATAGTG
*
15315660 CCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGG
707 CCCACCCGCCCGCCCACTCGTTTCGTCAGTTGG
15315693 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15315725 ATCGAACCGA
Statistics
Matches: 693, Mismatches: 71, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
738 3 0.00
739 164 0.24
740 15 0.02
741 506 0.73
742 5 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (739 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACAGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGATGGTGCCACATTTTTCCTCAC
CAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACAGACGGCAATGGGGTTCCAACAATCAG
GGGACCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTAG
CTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AATTTGGGGCCAAAAATACTTCCAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
ATCAAGAAAAATAGAAAACGAGTCATCTTGCCATGATAATTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGACGTGCCTAAACCCA
CCAACCACCCTACCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGACATAGTGCCCACCCGC
CCGCCCACTCGTTTCGTCAGTTGG
Found at i:15317653 original size:26 final size:26
Alignment explanation
Indices: 15317617--15317669 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15317607 TTTGACTTAG
*
15317617 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15317643 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15317669 G
1 G
15317670 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15318952 original size:883 final size:882
Alignment explanation
Indices: 15314933--15320097 Score: 6478
Period size: 883 Copynumber: 5.8 Consensus size: 882
15314923 CCCGCCCGCC
* * * * * *
15314933 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTGTAAGCATACAG-ATTTCA
1 CACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATA-TGTAGTTCA
* * * * * *
15314997 TTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCACATGCTGGACTCAGGCATGT-AT
64 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
** * * **
15315061 AGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGATCATCGCCGGAGAACCTGTTCGACGG
129 -GGTGCCGTATTTTTCTTCACC--GG----------GGA--ATCGCCGAAGAACCTGACCGACGG
* * * *
15315126 CATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGGGTGTAG-GCACATGATGTGCGATGGTTGCT
179 CACTGGGGTTCCGACAATCGGGGGGGCCAGGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCT
* * * * * *
15315189 GGTGCTTGGCGCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAA
243 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAA
* * * *
15315254 GAGCATTTGAGATTTCACAGGTTAGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTT
308 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
* *
15315319 TTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
373 TTTCAAATGGTCACAAAATCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAAC
* * * * *
15315384 AAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCCGAAAGAATTGTAAAAAA
438 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAA
15315449 TCCCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
503 TCCCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15315514 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
568 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * *
15315579 AAATATGAAGACGTGCCTAAACCCACCAACCAGCCTACCGATCCACGGCTTGCGCATCCCCTCTC
633 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTC
* * * * **
15315644 TCTGGCCGACATAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGT
698 TCTGGCCGGCATAGTGCCCGCCCGCCCG----TTCATTTCGTCGGTTGGCTTAGGCATATAGAGT
* * * * * * ** * *
15315709 TCATTCCCAGTCTAAGATCGAACC-GAATCGAGGGTTTCGGTAGCAGGATCGCCACCATGCAGAA
759 TCATTGCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGATAGCAAGATCGATAACATGCAGAG
* ** * * * * *
15315773 GGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGCCCGCA
823 GGGGACCTGGTCGATCCCCGGCTTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
* * * *
15315833 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCAAAGCATACTG-AGTTCA
1 CACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATA-TGTAGTTCA
* * *
15315897 TCCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
64 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
15315962 GGTCCCGTATTTTTCTTCATCAGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
129 GGTGCCGTATTTTTCTTCA-C-CGG---------GGA--ATCGCCGAAGAACCTGACCGACGGCA
* * * * *
15316027 TTGGGGTTCTGACGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGT
181 CTGGGGTTCCGACAATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
15316091 AATTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAG
246 ACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAG
* * * * *
15316156 CATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTC
311 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
* * * * * * *
15316221 CAAATGGTCACAAAAGCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTATGCATTCCAAAAAA
376 CAAATGGTCACAAAATCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAACAAA
* * * *
15316286 AATACAAGGATCACATCTACCAAGATTGGGGCCAAAAA-ACTA-TCCAAAAAATTTTTAAAAAAT
441 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACT-GAAAAAA-TTTTAAAAAAT
**** * ** * *
15316349 TTTGATCCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTT
504 CCCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
15316414 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAA
569 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
** * *
15316479 AATATGAAGATGTGCCTAAACCCGTCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
634 AATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCT
* * ** * * **
15316544 CTGGCTGGCGTAGTGCCCACCCGCCCGCACGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGG
699 CTGGCCGGCATAGTG----CCCG--C-C-CGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAG
* * * * * * * * *
15316609 AGTTCATTTCCAGTCTAGGATTGGATCAAACCGAGGGTTGC-AGTAGTC-GGATCGATAGCATGT
756 AGTTCATTGCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-TAG-CAAGATCGATAACATGC
* * * ** * * * * *
15316672 AGAGTGGGA-CTCGGCCGATCCCTGGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCACCCACA
819 AGAGGGGGACCT-GGTCGATCCCCGGCTTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
* *
15316736 CGCTCGTTTCTTGGGTTGACTTAGGCATACG-G---------AGT-T---C------A---C--T
1 CACTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATATGTAGTTCATT
* *
15316776 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
15316841 TGCCGCATTTTTCTTCGTCAGTGCACCATCACCGGAGAATCGCCTAAGAACCTGACTGACGGCAT
131 TGCCG---TATT-TT--TC--T------TCACCGGGGAATCGCCGAAGAACCTGACCGACGGCAC
* *
15316906 TGGGGTTCCGACAATCGGGGGGACC--GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
182 TGGGGTTCCGACAATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
15316969 CTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAGC
247 CTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAGC
* *
15317034 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
312 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTC
* * *
15317099 AAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
377 AAATGGTCACAAAATCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAA
* * **
15317164 ATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACA-CCTTCCAAAAAAATTTTAAAAAATCC
442 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTACTGAAAAAATTTTAAAAAATCC
* * *
15317228 CAAACCAT-AAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTC
506 CAAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
15317292 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
570 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
15317357 ATATGAAGATGTGCCTAAACCCACAAACCACACTATCGATCCACTGCTTGCGCATCCCGTCT-T-
635 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTC
* ** * * ** *
15317420 T------C----TGCCCGCCTGCCCGTTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTT
700 TGGCCGGCATAGTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTG
* * * * * * * * * *
15317475 CCAGTCTAAGATCAGATCGGACTGAGGGTTGCAAAAGCAGGATCGGTAGCACGAAGAGGGGGACC
765 CCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAAGATCGATAACATGCAGAGGGGGACC
** * * * * * * *
15317540 CAGCCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
830 TGGTCGATCCCCGGCTTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
* * * * *
15317593 CGCTCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATATGTAGTTCAT
* * * * * * * * *
15317658 TCCCAATCTAAGATCGAATCAGACCGAGGGTTACGACAGCAAATGCTGGGCTTGGGCATGTTCTG
65 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * * * *
15317723 GTGCCACATTTTTCTTCGCCGGGGCACCGTAACCAGAGCATCATCGGAGAACCTGATCGGCGGCA
130 GTGCCGTATTTTTCTTCACC-GGG----G-AATC---G---C--CGAAGAACCTGACCGACGGCA
* * * *
15317788 TTGGGGTTCCGACAATCGGGGTGGCCAAGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGG
181 CTGGGGTTCCGACAATCGGGGGGGCC-AGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
15317853 TACTCGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTGAAGGA
245 TACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGA
* * * *
15317918 GCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
310 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
* * * ** * *
15317983 TCAAATAGTCACAAAATCTTGTACACTTCGACTTTTAAGCTGAATTTTTTTGTGGATCCCAAAAA
375 TCAAATGGTCACAAAATCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAACAA
* * * *
15318048 AAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTACAAAATC
440 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATC
* * *
15318113 CCGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
505 CCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
15318178 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAAAA
570 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
15318243 ATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTC
635 ATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTC
* * *
15318308 TGGCCGACATAGTGCCCGCCCACCCGTTCATTTTGTCGGTTGGCTTAGGCATATAGAGTTCATTG
700 TGGCCGGCATAGTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTG
* *
15318373 CCAGTCTAAGATCGGACCAGACTGAGTGTTGTGATAGCAAGATCGATAACATGCAGAGGGGGACC
765 CCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAAGATCGATAACATGCAGAGGGGGACC
15318438 TGGTCGATCCCCGGCTTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
830 TGGTCGATCCCCGGCTTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
*
15318491 CACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGTAGTTCAT
1 CACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATATGTAGTTCAT
*
15318556 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTACTG
65 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** **
15318621 GTGCCGTATTTTTCTTCACCGGGGAATCGCCGAAGAACCTGACCGACGGCACTGGGGTTTTGATG
130 GTGCCGTATTTTTCTTCACCGGGGAATCGCCGAAGAACCTGACCGACGGCACTGGGGTTCCGACA
15318686 ATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
195 ATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
15318751 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
260 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTA
*
15318816 CAGGTTTGCTACCTGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
325 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
* *
15318881 ATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCAT
390 ATCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCAC
15318946 GTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATCCCAAACCTCAAAAAG
455 GTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATCCCAAACCTCAAAAAG
* *
15319011 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTGAAG
520 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
15319076 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
585 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* ** *
15319141 TAAACCCTCTTACCACCCTATCGATCCACGGCTTGAGCATCCCGTATCTCTGGCCGGCATAGTGC
650 TAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGC
15319206 CCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTGCCAGTCTAAGATCGG
715 CCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTGCCAGTCTAAGATCGG
* * *
15319271 ACCAGACTGAGGGTTGCGATAGCAAGATTGACAACATGCAGAGGGGGACCTGATCGATCCCCGGC
780 ACCAGACTGAGGGTTGCGATAGCAAGATCGATAACATGCAGAGGGGGACCTGGTCGATCCCCGGC
15319336 TTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
845 TTATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
15319374 CACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGTAGTTCAT
1 CACTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATATGTAGTTCAT
15319439 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
65 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * **
15319504 GTGCCGTATTTTTCTTCGCCGGGGAATCGCCGAAGAACCTGACCGACGGCACTAGGGTTTCGATG
130 GTGCCGTATTTTTCTTCACCGGGGAATCGCCGAAGAACCTGACCGACGGCACTGGGGTTCCGACA
15319569 ATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
195 ATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15319634 TTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
260 TTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTA
* *
15319699 TAGGTTTGCTACCTGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
325 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
* *
15319764 ATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTGTACATGCCAACAAAATTACAAGGATCA
390 ATCTTGTACACATCGACTTTTTAGCTGAA-TTTTTTTGTACATGCCAACAAAAATACAAGGATCA
*
15319829 TGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATCCCAAACCTCAAAAA
454 CGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATCCCAAACCTCAAAAA
* *
15319894 GTTTCAAAAATCATGAAAAATAGAAAACG-GTCGTCTTGCAATGAAACTTCACGTGATGGCTTAA
519 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15319958 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
584 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * *
15320023 CTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTAGCCGGCGTAGTG
649 CTAAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTG
15320088 CCCGCCCGCC
714 CCCGCCCGCC
15320098 TGCTCACCGG
Statistics
Matches: 3776, Mismatches: 392, Indels: 211
0.86 0.09 0.05
Matches are distributed among these distances:
856 1 0.00
857 157 0.04
858 4 0.00
859 2 0.00
861 4 0.00
865 2 0.00
868 3 0.00
869 6 0.00
870 2 0.00
872 1 0.00
874 1 0.00
875 5 0.00
876 1 0.00
877 502 0.13
878 56 0.01
879 3 0.00
880 7 0.00
881 4 0.00
882 2 0.00
883 1306 0.35
884 166 0.04
885 1 0.00
886 450 0.12
887 1 0.00
888 2 0.00
889 3 0.00
890 1 0.00
891 3 0.00
892 6 0.00
893 1 0.00
894 1 0.00
897 3 0.00
898 279 0.07
899 495 0.13
900 125 0.03
901 3 0.00
902 2 0.00
903 156 0.04
904 2 0.00
905 1 0.00
906 1 0.00
907 5 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
CACTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATATGTAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGTATTTTTCTTCACCGGGGAATCGCCGAAGAACCTGACCGACGGCACTGGGGTTCCGACAA
TCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTAC
AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACATCGACTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAAAAAATCCCAAACCTCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
AAACCCACCAACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCCGGCATAGTGCC
CGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTGCCAGTCTAAGATCGGA
CCAGACTGAGGGTTGCGATAGCAAGATCGATAACATGCAGAGGGGGACCTGGTCGATCCCCGGCT
TATGCATCCCGCCCTTTTGGCCGGCTGAGCGCTCGCA
Found at i:15320161 original size:26 final size:26
Alignment explanation
Indices: 15320125--15320177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15320115 GTTGGCTTAG
*
15320125 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15320151 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15320177 G
1 G
15320178 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15320906 original size:26 final size:26
Alignment explanation
Indices: 15320870--15320922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15320860 GTTGACTTAG
*
15320870 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15320896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15320922 G
1 G
15320923 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15321176 original size:733 final size:718
Alignment explanation
Indices: 15319229--15321419 Score: 2413
Period size: 733 Copynumber: 3.0 Consensus size: 718
15319219 CATTTCGTCG
* * * *** * *
15319229 GTTGGCTTAGGCATATAGAGTTCATTGCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CGATAG
1 GTTGGCTTAGGCATATGGAGTTCATTACCAGTCTAAGATGGGATTGGAC-CAGGGTTGTGGA-AG
** * * * *
15319293 CAAGATTGACAACATGCAGAGGGGGACCTGATCGATCCCCGGCTTATGCATCCCGCCCTTTTGGC
64 CAAGA-TGACAACACACAGAGGGGGACCCGATCGATCCACGGCTTACGCATCCCGCCCTTCTGGC
* * * * *
15319358 CGGCTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
128 CGGCTGAGCGCCCGCACACTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * *
15319423 AGCATATGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
193 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCAAGGGTTGCGGCAGCACATGCTGG
* * * * * *
15319488 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG-A--ATCGCCGAAGAACCTGACCGA
257 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGAACCTGACCGG
* *
15319550 CGGCACT-AGGGTTTCGATGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGT
322 CGGCATTGAGGATTTCGATGATCGGGGGGGCCA--GGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15319614 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTT
385 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * ** *
15319679 AAAGAGCATTTGAGATTTTATAGGTTTGCTACCTGTAGCCATTAAAGTGTCTGAAATAGGGACAC
450 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15319744 TTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTGTACATGC
515 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * * * *
15319809 CAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTACTGAAAAAATTTTAA
579 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAA
* *
15319874 AAAATCCCAAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GGTCGTCTT-GCAATG
644 AAAATCCCGAACCT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGGCAATG
*
15319937 AAACTTCACGT
708 AAACGTCACGT
* * ** * * * * * ***
15319948 GATGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
1 GTTGGCTT-A-GG--CATATGGAGTTCA-TTACCAGTC-T-AAGATGGGATTGG-A-CCAGGGTT
* * * * ** * * *
15320011 AT-GAAG-ATG-TGCCTAAACCCACCA-A---CCACCCTATCGATCCACGGCTTGCGCATCCCGT
57 GTGGAAGCAAGATGAC--AACACA-CAGAGGGGGACCCGATCGATCCACGGCTTACGCATCCCGC
* * * * * * * * *
15320069 CTTTCTAGCCGGC-GTAGTGCCCGCCCGC-CTGCTCACCGGCTCGCCCGTTGGCTTAGGCATACG
119 CCTTCTGGCCGGCTG-AGCGCCCGCACACTC-G-TTA-C--AT-G--GGTTGACTTAGGCATACG
* * *
15320132 GAGTTCATTCTCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACAGGACCAAAGGC
175 GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACC-AAGGG
* * * *
15320197 TT-CGGCTGCACATGCTAGGCTTGGGCATGTATTGGTGCCGCATTTTTCTTTGCCGGGGCACCAT
238 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCA-
15320261 CGTCGGAGCATCGTTGGAGAACCTGACTC-GCGGCATTG-GGATTTCGATGATCGGGGGGGCC-G
302 --TC---G--TC---GGAGAACCTGAC-CGGCGGCATTGAGGATTTCGATGATCGGGGGGGCCAG
* ** * *
15320323 GGTGGTGTGCGCACATAATGTGCGATGGGCACTGGTGCTTGGCCCTTATATTGGCCCCCTATCCG
356 GG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15320388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAA
420 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
*
15320453 TAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
485 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * **
15320518 AGTTTTTAGTTGAATTTTTTTGTGCATGCTAATAAAAATACAAGGATCACGTCTATCAAGTTTTT
550 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
15320583 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTGAAAAATCGTGA
615 GGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCGTGA
***
15320648 AAAATAGAAAACGGGTCGTCTTGCCGGCGTAATGCCCGCCCGTC-CGCCCT
679 AAAATAGAAAACGGGTCGTCTT---GGC--AATG---AAACGTCACG---T
* * *
15320698 CCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGATTGGACCAAGGGTTGTGGC
1 ---GTTGGCTTAGGCATATGGAGTTCATTACCAGTCTAAGATGGGATTGGACC-AGGGTTGTGGA
* * * * *
15320763 AGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTG
62 AGCAAGAT-GACAACACACAGAGGGGGACCCGATCGATCCACGGCTTACGCATCCCGCCCTTCTG
* *
15320828 GCCGGCTGAGCACCCGCACACTCGTTACATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATC
126 GCCGGCTGAGCGCCCGCACACTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
* *
15320893 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACATGGGTTGCGGCAGCACATGCT
191 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCAAGGGTTGCGGCAGCACATGCT
* * * * *
15320957 GGGCTCAGGCATGTGTTCGTGTCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGAACCTGACC
255 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGAACCTGACC
* ** * *
15321022 GGCGGCATTGAGGTTTTCG-TGATCAAGGGGGCCAGGGGGTGTGCGCACATGATGTACAATGGGT
320 GGCGGCATTGAGGATTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGT
15321086 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
385 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15321151 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACAC
450 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15321216 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCC
515 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
15321281 AACAAAAATACAAGGATCACATCTACCAAGGTTGGGGCCGAAACTCCTT-AAAAAAAATTTTAAA
580 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAA
*
15321345 AAATCCCGAA-CTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGC-ATG
645 AAATCCCGAACCT--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGGCAATG
*
15321408 AAACTTCACGT
708 AAACGTCACGT
15321419 G
1 G
15321420 AAGGCTTAAG
Statistics
Matches: 1209, Mismatches: 184, Indels: 159
0.78 0.12 0.10
Matches are distributed among these distances:
718 1 0.00
719 9 0.01
720 46 0.04
721 9 0.01
722 9 0.01
723 13 0.01
724 14 0.01
725 7 0.01
726 4 0.00
727 116 0.10
728 6 0.00
729 3 0.00
730 2 0.00
731 1 0.00
732 65 0.05
733 285 0.24
734 10 0.01
736 3 0.00
738 117 0.10
739 200 0.17
741 41 0.03
742 1 0.00
743 7 0.01
744 55 0.05
745 69 0.06
746 2 0.00
747 8 0.01
748 20 0.02
749 11 0.01
750 11 0.01
751 8 0.01
752 47 0.04
753 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
GTTGGCTTAGGCATATGGAGTTCATTACCAGTCTAAGATGGGATTGGACCAGGGTTGTGGAAGCA
AGATGACAACACACAGAGGGGGACCCGATCGATCCACGGCTTACGCATCCCGCCCTTCTGGCCGG
CTGAGCGCCCGCACACTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGAACCTGACCGGCGGC
ATTGAGGATTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCC
CGAACCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGGCAATGAAACGTCA
CGT
Found at i:15321783 original size:26 final size:26
Alignment explanation
Indices: 15321747--15321799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15321737 GTTGACTTAG
*
15321747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
15321773 GCATTCGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15321799 G
1 G
15321800 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15322672 original size:26 final size:26
Alignment explanation
Indices: 15322642--15322694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15322632 GTTGACTTAG
15322642 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15322668 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15322694 G
1 G
15322695 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15323568 original size:26 final size:26
Alignment explanation
Indices: 15323531--15323581 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15323521 GTTGACTTAG
*
15323531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15323557 GCATACGAAGTTCATTCTCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
15323582 TGATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15324178 original size:902 final size:893
Alignment explanation
Indices: 15320701--15324302 Score: 4962
Period size: 889 Copynumber: 4.0 Consensus size: 893
15320691 CCGCCCTCCC
* * ***
15320701 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGATTGGACCAAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGC
* *
15320766 AGGATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCC
66 AGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
15320831 GGCTGAGCACCCGCACACTCGTTACATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
131 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15320896 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAAC-ATGGGTTGCGGCAGCACATGCTGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGG
* * *
15320959 GCTCAGGCATGTGTTCGTGTCACATTTTTCTTTGTCGGGGCACCATCGTC---G----GAGAACC
260 GCTCGGGCATGTGTTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGTACCGAGAACC
* * * * * * *
15321017 TGACCGGCGGCATTGAGGTTTTCGTGATCAAGGGGGCC-AGGGGGTGTGCGCACATGATGTACAA
325 TGACCGACGGCATTGAGGGTTCCGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
15321081 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
390 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
15321146 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGG
455 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGGG
*
15321211 GACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
520 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * *
15321276 TTGCCAACAAAAATACAAGGATCACATCTACCAAGGTTGGGGCCGAAACTCC-TTAAAAAAAATT
585 ATGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCCTTTCAAAAAAATT
* * *
15321340 TTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGC
650 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* *
15321405 ATGAAACTTCACGTGAAGGCTTAAGGGACAATTCTATGAATTTACAAGCCATAAAAATGGCATTG
715 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** * *
15321470 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
780 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCAT
* * * *
15321535 CCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCGCC-CG---C--CT
845 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGTTTCGTCG
* * ***
15321578 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGATTGAGGGTTGTGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTGTGGCAG
* * * *
15321642 CAGGATCGACAGCACACAGAGGGGGACCCAGCCGATCCCCGACTTGCGTAT-CCGACCCCTCTGG
65 CAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCG-CCCCTCTGG
* * *
15321706 CCGGCTGAGCACTCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
129 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * **
15321771 AAGCATTCGGAGTTCATTCACAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATAATG
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * *
15321836 GACTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGACCATCACCGGA
259 GGCTCGGGCATGTGTTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA--GT-ACC-GA
* * * * **
15321901 GAACCTAACCGGCGGCATTGAGGTTTCCGCGATCGATGGGGCCG-GGGGGTGTGTACACATGATG
320 GAACCTGACCGACGGCATTGAGGGTTCCGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATG
*
15321965 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
385 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15322030 ACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
450 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAA
15322095 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
515 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15322160 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCCGAAA
580 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCCTTTCAAAA
* * *
15322225 AAACTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTTATC
645 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
15322290 TTGCCGTGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
710 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15322355 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
775 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTG
* *
15322420 CGCATCCCGTCTCTCT-GCCCAGCGTAGTGCCCGCCTGCCCG-CTCGTTTCGTCG
840 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCTCGTTTCGTCG
* * **
15322473 GTTTGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGC
* * * * ** * * **
15322538 ATGATTGGCATCATGCAGAGGGGGACCCGGCCGACCCTCGGCTTGCGCATCCTGCTGCTCTGGCC
66 AGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
** *
15322603 AACTGAGCACCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15322668 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15322733 CTCGGGAATGTGTTCGTGTCGCATTTTTCTTCG-C-CGG-AGCGTCGTCGGAGTACC-TG-A-CT
261 CTCGGGCATGTGTTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGTACCGAGAACCT
* * **
15322792 GA-C-A--GCATTG-GGGTTCCGGCGATCG-GAGGGGCCGGGGGGGTGTGC-CACATGATGAGTT
326 GACCGACGGCATTGAGGGTTCC-GCGATCGAG-GGGGCCGAGGGGGTGTGCGCACATGATGTGCG
* *
15322850 ATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACAC
389 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15322915 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGG
454 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGG
* *
15322980 GGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTGCTGAATTTTTTTGTG
519 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* **
15323044 CATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTTCGGAAAAAT
584 CATGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCCTTTCAAAAAAAT
* *
15323109 TTTAAAAAATCCCGAACCGCAAAACATTTTCAAAAATCGTTAAAAATAGAAAACGAGTCATCTTG
649 TTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
* *
15323174 CCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCAT
713 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15323239 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTCCCACACTATAGATCCACGGCTTGCAC
778 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGC
* *
15323304 ATCCTGTCTCTCTGGCCGACGTAGTGATTGCCCGCCCGCCCGCCCACTCGTTTCGTCT
843 ATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCG--C-CTCGTTTCGTCG
* ** ** *
15323362 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTACGATAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGC
** * * * *
15323427 AGGATCGGTAGCACACAGAGGGGGATCCGGTCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCT
66 AGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
15323492 GGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
15323557 GCATACGAAGTTCATTCTCAGTCTATGATCAAACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15323622 CTCGGGCATGTGTTGGTGCCACATTTGTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAGAA
261 CTCGGGCATGTGTTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG--T-ACCGAGAA
* * *
15323687 CCTGACCAACGGCATT-AGGGTTCCGATGATCGAGGGGGCCGAGGGGGTGTGCGCAAATGATGTG
323 CCTGACCGACGGCATTGAGGGTTCCG-CGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* *
15323751 CGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15323816 ACCCTC-TAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGACTAAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAAT
*
15323880 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGT-GCTGAATTTTTTT
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTT
* * *
15323944 GTGCATGCCAACAAAAATACAAGGATCACATCTTCCAATTTTGGGGCCAAAATTCATTTCAAAAA
581 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCCTTTCAAAAA
* ** ** * *
15324009 AATTTTAAAAAATCCCAAACTTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
646 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
*
15324074 TAG-CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
711 T-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15324138 CATTGGCATGCAGAAATATGAAGATGTGCCTAGACCCACCTACTACCCTATAGATCTACGACTTG
775 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTG
* * *
15324203 CGCATCCTGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCGCCCGCCTACTCATTTCGTCG
840 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCG-C--CTCGTTTCGTCG
*
15324264 GTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGAT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15324303 CGGATTGGAC
Statistics
Matches: 2419, Mismatches: 246, Indels: 95
0.88 0.09 0.03
Matches are distributed among these distances:
876 3 0.00
877 201 0.08
878 67 0.03
879 1 0.00
880 113 0.05
881 371 0.15
882 13 0.01
883 1 0.00
884 1 0.00
885 16 0.01
886 1 0.00
887 1 0.00
889 567 0.23
890 221 0.09
891 2 0.00
892 19 0.01
893 3 0.00
894 2 0.00
895 254 0.11
896 4 0.00
897 1 0.00
898 4 0.00
899 1 0.00
900 1 0.00
901 3 0.00
902 373 0.15
903 174 0.07
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGTGGCAGC
AGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTCGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGTACCGAGAACCT
GACCGACGGCATTGAGGGTTCCGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACATCTACCAATTTTGGGGCCAAAAATCCTTTCAAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCGTTTCGTCG
Found at i:15324946 original size:717 final size:716
Alignment explanation
Indices: 15323557--15325046 Score: 2170
Period size: 717 Copynumber: 2.1 Consensus size: 716
15323547 CCCAGTCTAA
* * * * * *
15323557 GCATACGAAGTTCATTCTCAGTCTATGATCAAACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
15323622 CTCGGGCATGTGTTGGTGCCACATTTGTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAGAA
65 CTCGAGCATGTGTTGGTGCCACATTTGTCTTCGTCGGCGCACCATCACCGGAGCATCACCGAGAA
* *
15323687 CCTGACCAACGGCATTAGGGTTCCGATGATCGAGGGGGCCGAGGGGGTGTGCGCAAATGATGTGC
130 CCTGACCAACAGCATTAGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCAAATGATGTGC
* *
15323752 GATGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15323817 CCCTCTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGACTAAAATGG
260 CCCCCTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGACTAAAATGG
* *
15323882 GGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGTGCTGAATTTTTTTGTG
325 GGATACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGTGCTGAATTGTTTTGTG
*** *
15323947 CATGCCAACAAAAATACAAGGATCACATCTTCCAATTTTGGGGCCAAAATTCATTTCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAATTCATTTCAAAAAAAT
*
15324012 TTTAAAAAATCCCAAACTTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTAG
455 TTTAAAAAATCCCAAACGTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTAG
*
15324077 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
15324142 GGCATGCAGAAATATGAAGATGTGCCTAGACCCACCTACTACCCTATAGATCTACGACTTGCGCA
585 CGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGACTTGCGCA
* ** * *
15324207 TCCTGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCGCCCGCCTACTCATTTCGTCGGTTGGCTT
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTAGCTT
15324272 AG
715 AG
* *
15324274 GCATACGTAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
** * * *
15324339 CTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGCGCACCATCATCGGAGCATCGCCGGAGA
65 CTCGAGCATGTGTTGGTGCCACATTTGTCTTCGTCGGCGCACCATCACCGGAGCATCACC-GAGA
* * * * **
15324404 ACCTGACCGACAGCATTGGGGTTCCGACGATCG-GGGGGGC-TGGGGGTGTGCGCCCATGATGTG
129 ACCTGACCAACAGCATTAGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCAAATGATGTG
*
15324467 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15324532 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCC-TAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGACTAAAAT
15324597 GGGG-TCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTGTTT
323 GGGGAT-ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGT-GCTGAATTGTTT
* * * *
15324660 TGTGCATGCCAATAAAAATACAAGGATCACGTCTAAAAAGTTTGTGGCCAAAACTTC--TTCTGA
386 TGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAA-TTCATTTC-AA
** * * *
15324723 AAAAATTTTAAAAAATCTTGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAGAACGAGTC
449 AAAAATTTTAAAAAATC-CCAAACGTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
15324787 GTCTT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 GTCTTAG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
15324851 ATGGCATTCGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGA
577 ATGGCATTCGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGA
* * * * * ** * *
15324916 CTTGCGTATCCCGTGTCTC-GAGCTGGCGTAGTGCCCGCCCGCCTGCCCTCCCGTTCGTTTTGTC
642 CTTGCGCATCCCGTCTCTCTG-GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTC
15324980 GGTTAGCTTAG
706 GGTTAGCTTAG
* *
15324991 GCTTACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCA
15325047 GGATCGGTAG
Statistics
Matches: 689, Mismatches: 74, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
716 94 0.14
717 554 0.80
718 41 0.06
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGGC
TCGAGCATGTGTTGGTGCCACATTTGTCTTCGTCGGCGCACCATCACCGGAGCATCACCGAGAAC
CTGACCAACAGCATTAGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCGCAAATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGACTAAAATGGG
GATACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGTGCTGAATTGTTTTGTGC
ATGCCAACAAAAATACAAGGATCACATCTAAAAAGTTTGGGGCCAAAATTCATTTCAAAAAAATT
TTAAAAAATCCCAAACGTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTAGC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTC
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGACTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTAGCTTA
G
Found at i:15325190 original size:26 final size:26
Alignment explanation
Indices: 15325150--15325202 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15325140 GTTGACTTAG
*
15325150 GCATACGGAGCTCATTCCCAGTGTAA
1 GCATACGGAGCTCATTCCAAGTGTAA
* * *
15325176 GCATATGGAGTTCATTCCAAGTTTAA
1 GCATACGGAGCTCATTCCAAGTGTAA
15325202 G
1 G
15325203 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTGTAA
Found at i:15326086 original size:25 final size:25
Alignment explanation
Indices: 15326052--15326099 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15326042 GACTTAGGCA
*
15326052 TACGGAGTTCATTCACAGTCTAACG
1 TACGAAGTTCATTCACAGTCTAACG
*
15326077 TACGAAGTTCATTCCCAGTCTAA
1 TACGAAGTTCATTCACAGTCTAA
15326100 GATCGGACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
TACGAAGTTCATTCACAGTCTAACG
Found at i:15327881 original size:26 final size:25
Alignment explanation
Indices: 15327845--15327896 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15327835 GTTGACTTAG
15327845 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCA-TCTAA
* *
15327871 GCATACGGAGTTCATTCTCATCTAA
1 GCATACAGAGTTCATTCCCATCTAA
15327896 G
1 G
15327897 ATCAGAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCATCTAA
Found at i:15329672 original size:26 final size:25
Alignment explanation
Indices: 15329642--15329691 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
15329632 TTACTTAGGG
*
15329642 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCA-TCTAAGC
*
15329668 ATACGAAGTTCGTTCCCATCTAAG
1 ATACGAAGTTCATTCCCATCTAAG
15329692 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (25 bp):
ATACGAAGTTCATTCCCATCTAAGC
Found at i:15330007 original size:905 final size:900
Alignment explanation
Indices: 15324274--15331412 Score: 8664
Period size: 905 Copynumber: 7.9 Consensus size: 900
15324264 GTTGGCTTAG
*** *
15324274 GCATACGTAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACG-AGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * ** * *
15324339 CTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGCGCACCATCATCGGAGCATCGCCGGAGA
64 CTCGACCATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAGAGA
* * * *
15324404 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGG-CTGGGGGTGTGCGCCCATGATGTGC
129 ACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15324468 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15324533 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15324598 GGGTCACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * * *
15324663 GCATGCCAATAAAAATACAAGGATCACGTCTAAAAAGTTTGTGGCCAAAACTTC-TTCTGAAAAA
388 GCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAAAAA
** ** ** *
15324727 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15324792 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15324857 TTCGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTG
583 TTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
15324920 CGTATCCCGTGTCTC-GAGCTGGCGTAGTGCCCGCCCGCCTGCCCTCCCGTTCGTTTTGTCGGTT
646 CGCATCCCGTCTCTCTG-GCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** *
15324984 AGCTTAGGCTTACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGG
** * * * * *
15325049 ATCGGTAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTGCTCATCTCGTCCC-TCTGGCCGG
775 ATCGACAGCAAACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCATCTGGCCGG
* * * *
15325113 CTGAGCACCCGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTGTAA
839 CTGAGCACCCACACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15325176 GCATATGGAGTTCATTCCAAGTTTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGTTGGG
1 GCATA-CGAGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * **
15325241 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CCGAGGCACCAT-GCCGGAGCATCGCTGGAG
64 CTCGACCATGTGTTGGTGCCGTATTTTTCTT-AGCCGGGGCACCATCGCCTGAGCATCGCCAGAG
* * *
15325304 AACCTGACTGACGGCGTTGGGGTTCCGACGATC-GGGGGGCCGGACGGGGTGTGCGCACATGATG
128 AACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGG--GGGGTGTGCGCACATGATG
* * * *
15325368 TGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGGACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15325433 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGTCAGTAGCCATCAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15325498 ATGGGGACACTTTTTTGAAATGGTCAC-AAATCTTGTACACTTCCATTTTTTAGCTGAA-TTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *** * * **
15325561 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTAATGCCAAAACT-CCTTCAAAA
385 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAA
* ** * *
15325625 AAAATTTTAAAAAATCCCGACCCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15325690 CTGGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * *
15325754 GCATTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
15325819 GCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCATCCGCCCGCTTGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
15325883 GGCTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAGATCGAGGGTTGCAGCAGTAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGG
* * * * * * *
15325948 ATGGGCAG-AATGCAGAGGGGGACCCG-GCTGATCCCCGGCTTGTGGATCCCGCCCCTCTGGCCG
775 ATCGACAGCAA-ACAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCATCTGGCCG
* * * *
15326011 ACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
838 GCTGAGCACCCACACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15326075 -CGTACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATATTGGG
1 GCATACG-AGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * ** * *
15326139 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCAGGGGCACCATCATCGGAGCATCGCCGGAG
64 CTCGACCATGTGTTGGTGCCGTATTTTTCTTAGCC-GGGGCACCATCGCCTGAGCATCGCCAGAG
* * * **
15326204 AACCTAACCGACGGCATTAGGGTTTCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * *
15326268 TGATGGGTGCTGGTACATGGCCCTTATATTGACTCCGTATCCCTCACCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15326333 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15326398 GGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * **
15326463 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGC--AAATCCCCTTCCAAAA
387 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-ACTTTCTGAAA
* ** *** *
15326526 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-AAAAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15326590 TCGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15326655 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGACTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15326720 CGCCTCCCGTCTCTTTGGTCGGCGTA------G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
15326777 GCTTAGGCATACGGAGTTCATTCCCAGTCCAAGACCGGACCAGATCGAGGGTTGTGGAAGTAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGA
* * ** * * * * * * *
15326842 TTGGCAGCACGCAGAGGGGGACCC-AGCCCATCCCTGGCTTGCGTATCCCACCCCTCTGGCCGGT
776 TCGACAGCAAACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGC
* * * *
15326906 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 TGAGCACCCACACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15326968 GCATACGAAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGTTGGG
1 GCATACG-AGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * * * * **
15327033 CTCGGGCATGTGTTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCAGATCATAACC-GAAG
64 CTCGACCATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAG-AG
* *
15327097 AACCTAACCAGCGG-ATTTGGGGTTCCGACGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGGCA-TT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * *
15327159 GCGATGGGTGGTGGTACATGGCCCTTATATTGGCTCCATATCCCTCATCAAACTTGGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * * *
15327224 CACGCCCTTAAAAAGCATTTGAGATTTTACAGGTTCGTTGCCATTAGCAATTAAAGTGTTTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15327289 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCAGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * * * **
15327353 GTGC-TTGCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGACCAAAACT-CCTTCCAAAA
386 GTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAAA
* * ** *
15327416 AAATTTTGAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15327481 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15327546 CATTGGCACGTAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATTGTTCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15327611 TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGACCAGCCCGCCTGCCCGTCCGCTCGTTTCGTCG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CC-GCCTGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
15327676 GTTGGCTTAGGTATATGGAGTTCATTCCTAGTCTAAGATGGGA-TAGGATCGAGGGTTGCGGTAG
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GATCGAGGGTTGCGGCAG
* * * * * * *
15327740 CAAGATCGACAGCACACTGAGGGGGTCCCGA-CTGATCCCCAGCTTACGCATCCCGCCCCTCTGG
771 CAGGATCGACAGCAAACAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCATCTGG
* * *
15327804 TCGGTTGAGCA-CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
835 CCGGCTGAGCACCCA-CACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15327868 TAA
898 TAA
* *
15327871 GCATACGGAGTTCATTCTCA-TCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATAC-GAGTTC-TTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15327935 GCTCGACCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCTGAGCAT---C---G
63 GCTCGACCATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAGAG
*
15327994 ----T------C-G----GGGTTCCGACGATCGAGAGGGGCCGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGGCGGCATTGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15328044 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGACAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15328109 ACCCCCTTAAAGGGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15328174 GGGGACACTTTTTTCAAATGGTCACCAAATCTGGTAAACTTCGAGTTTTTAGCTGAATGTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
15328239 TGCATAACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATAC-TTCTGAAAA
387 TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAAAA
* * *
15328303 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
452 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
15328368 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
15328433 ATTGGCATGTAGAAATATGAAGATGTACTTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ** *
15328498 GCAT-CCGTCTCTCTAGCCGGCATAGTGCCCGCCTACCCGCCCGCGTGCTCGTTTCGTCGCTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
15328562 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGAT
* ** * * * * * * *
15328627 CGACCGCATGCAGA--TGGACTCGGTCGATCCCCGGCTTACGCATCTCGCCCATCTAGCCGGTTG
777 CGACAGCAAACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGCTG
*
15328690 AGCACCCACACGCTTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAA
842 AGCACCCACACGC-TCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
15328750 GCATACGGGTTTCTTCCCAGTCTAAGATCGGACTAGACCGAGGGTTATGGCAGCACATGCTAGGC
1 GCATACGAG-TTCTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * * *
15328815 TCGGGCATGTGTTGG-GCCCGCATTTTTCTTTGCCGAGGCACCATCACTTAGGAGCATCGCTGGA
65 TCGACCATGTGTTGGTG-CCGTATTTTTCTTAGCCGGGGCACCAT--C------G---C-CT-GA
* * * * *
15328879 GCATCACCAGAGAACTTGACCGACGGCATTGGTGTTCCGGCGATCGGGAGGGCC-GGGGGTGTGC
116 GCATCGCCAGAGAACCTGACCGGCGGCATTGG-GTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
*
15328943 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
180 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
15329008 TCGAGAACTCACACCCCCTTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
245 TCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15329072 AAGTGTCTGAAATGGGGACACTTATTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAG
309 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * ***
15329137 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTTACCAAAAA
374 CTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* * ** *
15329202 T-CTTTCTGAAAAATTTTTAAAAAATCTC-AACCACAAAAAGTTTTGAAAATCGTGAAAGATAGA
439 TACTTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
15329265 AAACGAGTCATCTTGCCATGAAA-TATCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAA
504 AAACGAGTCGTCTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
15329329 GCCATAAAAATGGAATTGGCACATAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATC
568 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * **
15329394 GATCCACGGCTTGTGCATCCCGTCTCTTTGGTCGGTGTAGTGCTCGCCAGCCTGCCCGCCCGCCC
633 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCTGCCCGCCCGCCC
* *
15329459 GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATGGGA-CAGGATCG
694 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GATCG
* * * *
15329523 AGGGTTGCGGCAGCAGGATTGGCAGCAAACAGAGGGGAACCCGGTCGAT-CCCGGCTTGCGCATC
758 AGGGTTGCGGCAGCAGGATCGACAGCAAACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * ** * * *
15329587 CCGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCATTTCATGGGTTTACTTAGGGATACGGAGTT
823 CCGCCCATCTGGCCGGCTGAGCACCCACACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTT
15329652 CATTCCCAGTCTAA
887 CATTCCCAGTCTAA
15329666 GCATACGAAGTTCGTTCCCA-TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACG-AGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15329730 CTCGACCATGTGTTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCTGAGCATCGCCGGAGA
64 CTCGACCATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAGAGA
* *
15329795 ACCTGACCGGCGGTATTAGGGTTCCGGCGATCGAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15329860 CGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15329925 ACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTC-CAGAA
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AA
*
15329989 CGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** ** **
15330054 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACCCCCTCCAAAA
386 GTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAAA
*
15330118 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15330183 TTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15330248 CATTCGCACATAGAAATATGAAGATGTGCATAAAGCCACCTATCACACTATCGATCCACGGCTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
15330313 CACGTCTCGTCTCTCTGGCTGACGTAGTGCCCG-CTCGCCCGTCCGCCCGCTCGTTTCATTGGTT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
15330377 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTACGGTAGCAAG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGG
** *** * * *
15330442 ATCGGTAGCACGTAGAGGGGGACCCGATCGATCCTCGACTTGCACATCCCGCCCATCTGGCCGGC
775 ATCGACAGCAAACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGC
* *
15330507 TAAGCACCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GATCTAA
840 TGAGCACCCACACGC-TCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAA
*
15330569 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTC-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
15330634 CTC-ACGCATGTGTTGGTGCCGTATTTTTCTTAATCGGGGCACCATTGTCGGAGCATCGCCAGAG
64 CTCGAC-CATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAGAG
* * * * * *
15330698 AACCTGACCGGCAGCCTTGGGGTTTCCGATGATCGGGGGGGCTAGGGGGGTGTACACACATGATG
128 AACCTGACCGGCGGCATT-GGG-TTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATG
* * * * *
15330763 TGCTATCGGTGCTAGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15330828 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15330893 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
15330958 TATGCACACCAACAAAAATACAAGGATCATGTGTACCAGGTTTGGGGCTAAAACTCCTTTC-GAA
385 TGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAA
* * * * *
15331022 AAAATTTTAAAAAATTCTGAACCCCAAAAAGTTTTAAAAGTCGTGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15331087 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** *
15331152 GCATTGGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTGTATCGATCCATGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
15331217 GCGCATCCCATCTTTCTGGCCGACGTAGTGCCCTCCTGCCTGCCCAGCCCGCTTGTTTTGTCAGT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCC-GCCCGCTCGTTTCGTCGGT
* * * * *
15331282 TGGCCTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGAGTTGTGGCAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAG
* * * * * * *
15331347 GATTGACAGCACGA-AGAGGGGGACCTGATCGATCCCCGGCTTTCGCTTCCCGCCCCTCTGGTCG
774 GATCGACAGCA-AACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCG
15331411 GC
838 GC
15331413 ACATCTTCAT
Statistics
Matches: 5454, Mismatches: 648, Indels: 266
0.86 0.10 0.04
Matches are distributed among these distances:
877 1 0.00
878 75 0.01
879 107 0.02
880 7 0.00
881 104 0.02
882 3 0.00
883 5 0.00
884 137 0.03
885 81 0.01
886 239 0.04
887 2 0.00
889 1 0.00
890 86 0.02
891 232 0.04
892 145 0.03
893 242 0.04
894 91 0.02
895 1 0.00
897 3 0.00
898 255 0.05
899 283 0.05
900 362 0.07
901 207 0.04
902 241 0.04
903 580 0.11
904 143 0.03
905 736 0.13
906 312 0.06
907 2 0.00
908 2 0.00
909 1 0.00
910 166 0.03
911 292 0.05
912 8 0.00
913 13 0.00
914 5 0.00
915 98 0.02
916 167 0.03
917 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGAGTTCTTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGACCATGTGTTGGTGCCGTATTTTTCTTAGCCGGGGCACCATCGCCTGAGCATCGCCAGAGAAC
CTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTTCTGAAAAAATT
TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGAC
AGCAAACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCA
CCCACACGCTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15330579 original size:26 final size:26
Alignment explanation
Indices: 15330543--15330595 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330533 GTTGACTTAG
15330543 GCATACGGAGTTCATTCCC-GATCTAA
1 GCATACGGAGTTCATTCCCAG-TCTAA
15330569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15330595 G
1 G
15330596 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15332920 original size:26 final size:26
Alignment explanation
Indices: 15332884--15332936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332874 TTGGTCTGAT
15332884 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15332910 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15332936 C
1 C
15332937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15333358 original size:904 final size:897
Alignment explanation
Indices: 15331410--15333904 Score: 3455
Period size: 903 Copynumber: 2.8 Consensus size: 897
15331400 CCCTCTGGTC
* *
15331410 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
15331475 CTTAAGCCTTCACGTGAAGTTTCATGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * *
15331540 CTTTTTGCGTTTCAGGATTTTTTAATATTTTTTTGAAAGGAG-TTTTGGCCCCAAACTTGGTAGA
131 CTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGGCCCCAAACTTGGTAGA
* * *
15331604 CATGATCCATGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTAAAAACGCGAAGCGTACAAGA
196 CATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15331668 TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15331733 GTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15331798 ATACAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCC-ATC
391 ATA-TAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
* * * * *
15331862 ATTAGAACCCCAATG-C-TGCTGGTCAGTTTCTCC-GA----C-G-ATGGTGCCTCGACGAAGAA
455 GTCAGAACCTCAATGTCGT-C-GGTCAGGTTCTCCGGATGTCCGGTATGGTGCCCCGACGAAGAA
** * * *
15331918 AAATGGGGTACCAGCACATGCCCAGCCTAGCATGTGCTGCCGTAACCCTCGATCCGGTCTGATCT
518 AAATACGGCACCAGCACATGCCCAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCT
* * * *
15331983 TAGACTCGAAATGAAC-TCTGTATTCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCA
583 TAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
** * ** * * *
15332047 TAAAACGAGCGTACGGGCGCTC-TGTCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCG
647 CGAAACGAGCGTGCGGGCGCTCAACT-GGCCAGAGGGGTGGGATGCGTAAGCCAGGGATCGACCG
* ** * *
15332111 GGTCACCCTTTGAGTGCTACCGATCCTACTACCACAACCCTCGGTCTGGTCCGATCTTTGACTAG
711 AGTCACCCTTTGAGTGCTACCGATCCTACTACCACAACCCTCGGTCCAGTCCAATCTTAGACTAG
* *
15332176 GAATGAACTCCATATGCCAAAGCCAACCGACGAAACGAGCGACGGGCGAGCGGGCGGGAACTACG
776 GAATGAACTCCATATGCCAAAGCCAACCAACGAAACGAGCGACGAGCGAGCGGGCGGGAACTACG
** * *
15332241 CTGGCCAGAGAGACGGGATGTGCAAGTCATGGATCGATAGGGTCATAGGTGGGTTTA
841 CTGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTCATAGGTGGGCTTA
* **
15332298 GGCACATCTTCATATTTCTACATTCCAATGCCATTTTTATCACTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
** *
15332363 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCATTTCTATTTTTCACGATTTTCAAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * *
15332428 CTTTTTACAGTTCCAGATTTTTTAAAATTTTTTTGGAAGG-GTTTTTGGCCCCAAACTTGGTAGA
131 CTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGGCCCCAAACTTGGTAGA
*
15332492 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
196 CATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15332557 TTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15332622 GTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
15332687 ATATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCACCCCGACCCCACCGAT
391 ATATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCC-CCGAT
*
15332752 CGTCGGAACCTCAATGTCGTCGGTCAGGTTCTCCGGTGATGGTCCGGTAATGGTGCCCCGACGAA
454 CGTCAGAACCTCAATGTCGTCGGTCAGGTTCTCC-G-GAT-GTCCGGT-ATGGTGCCCCGACGAA
**
15332817 GAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTTTGGTCTG
515 GAAAAATACGGCACCAGCACATGCCC-AGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
*
15332882 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGGCTGGGAATGAACTTCGTATGCCTAAGTCAAC
579 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
* * * * *
15332947 CCACGAACCAAGCGTGCAGGCGCTCAACTGGCCAGAGGGGTGGGATGCGTAAGTC-GAGGATCGG
644 CCACGAAACGAGCGTGCGGGCGCTCAACTGGCCAGAGGGGTGGGATGCGTAAGCCAG-GGATCGA
* * * * **
15333011 GCGAGTCCCCCTTTGCGTGCTGCCGATCCTACT-GTAGCAACCCTCGGTCCAGTCCAATCTTAGA
708 CCGAGTCACCCTTTGAGTGCTACCGATCCTACTACCA-CAACCCTCGGTCCAGTCCAATCTTAGA
* ** * * * *
15333075 CTGGGAATGAACTCTGTATGCCTAAGCCAACTAACGAAACGAGCGAGCGAGCGGGCGGGCGGGCA
772 CTAGGAATGAACTCCATATGCCAAAGCCAACCAACGAAACGAGCGA-CGAGCGAGCGGGCGGGAA
* * * **
15333140 TTACG-TCGGCCAGAGAGACGGGATACGCAAGCCGTGGTTCGATAGGGTGGTAGGTGGGCTTA
836 CTACGCT-GGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTCATAGGTGGGCTTA
* ** * *
15333202 GGTACATCTTCATATTTCTATGTGCCAATGCCATTTCTGTGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* **
15333267 CTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* *
15333332 CTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT-GCCCTAAACTTGGTAGA
131 CTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGGCCCCAAACTTGGTAGA
* * *
15333396 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTTTACAAGA
196 CATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15333461 TTTTGTGGCCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATAGCTGCTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
** *
15333526 GTAAAATCTCAAATGAGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
15333591 ATATAAGGGCCAAGTACCACCACCCATCACACATTATATGCGCACACCCCCCCGGCCCCCTGATC
391 ATAT-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
* * **
15333656 GTCAGAACCTCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCTGGTGGTGGTGCCCCGGTGAAG
455 GTCAGAACCTCAATGTCGTCGGTCAGGTTCTCCG--GATG-TCCGGT-ATGGTGCCCCGACGAAG
* * * * *
15333721 AAAATTACGGCAGCAACACATGCCCAAGCCTGGCATGTGCTGCCGCAACCCTCAGTCCGGTCTGA
516 AAAAATACGGCACCAGCACATGCCC-AGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
* * *
15333786 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTAT-GAATGCCTAAGTCAAC
580 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAAC
* * * *
15333850 CCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGTGGGATGCGTAAGCC
644 CCACGAAACGAGCGTGCGGGCGCTCAACTGGCCAGAGGGGTGGGATGCGTAAGCC
15333905 GGCGATTGGT
Statistics
Matches: 1419, Mismatches: 158, Indels: 45
0.87 0.10 0.03
Matches are distributed among these distances:
887 1 0.00
888 246 0.17
889 166 0.12
890 2 0.00
891 26 0.02
892 2 0.00
893 1 0.00
894 2 0.00
899 1 0.00
900 1 0.00
902 42 0.03
903 451 0.32
904 432 0.30
905 46 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (897 bp):
GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
CTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGGCCCCAAACTTGGTAGA
CATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
TCAGAACCTCAATGTCGTCGGTCAGGTTCTCCGGATGTCCGGTATGGTGCCCCGACGAAGAAAAA
TACGGCACCAGCACATGCCCAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAACTGGCCAGAGGGGTGGGATGCGTAAGCCAGGGATCGACCGAGTCA
CCCTTTGAGTGCTACCGATCCTACTACCACAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATG
AACTCCATATGCCAAAGCCAACCAACGAAACGAGCGACGAGCGAGCGGGCGGGAACTACGCTGGC
CAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTCATAGGTGGGCTTA
Found at i:15333839 original size:26 final size:26
Alignment explanation
Indices: 15333787--15333839 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15333777 CCGGTCTGAT
* *
15333787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGAATG
* *
15333813 CTTAGACTGGGAATTAACTATGAATG
1 CTTAGACTGGGAATGAACTACGAATG
15333839 C
1 C
15333840 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGAATG
Found at i:15335506 original size:26 final size:26
Alignment explanation
Indices: 15335464--15335517 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
15335454 GGTCTGATCT
* * *
15335464 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGAAATAAACTCCACATGCC
*
15335490 TAGACTGGAAATAAACTCGACATGCC
1 TAGACTGGAAATAAACTCCACATGCC
15335516 TA
1 TA
15335518 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
TAGACTGGAAATAAACTCCACATGCC
Found at i:15337276 original size:12 final size:12
Alignment explanation
Indices: 15337259--15337283 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15337249 AATGAACTCC
15337259 ATATAAGGGCCA
1 ATATAAGGGCCA
15337271 ATATAAGGGCCA
1 ATATAAGGGCCA
15337283 A
1 A
15337284 GTACCAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (12 bp):
ATATAAGGGCCA
Found at i:15337471 original size:257 final size:257
Alignment explanation
Indices: 15337008--15337515 Score: 730
Period size: 257 Copynumber: 2.0 Consensus size: 257
15336998 GAGGGATACG
*
15337008 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCACACTCCCCCCCCGGCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCACACACCCCCCCCGGCCC
* * * * * * *
15337073 CCTCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTCTGGCGATGGTGCCG
66 CCCCGATCATCAGAACACCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
** * *
15337138 CGGGGAAGAAAAAAATGGCACCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATC
131 CGACGAAGAAAAAAACGACACCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATC
* *
15337203 CGGTTCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCATATAA
196 CGGTCCGATCTTAGACTGGGAATGAACTCT-ATATGCTTAGACTGGGAATGAACTCCATATAA
* * * * *
15337265 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACAGCCCCCCTGGCCC
1 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCACACACCCCCCCCGGCCC
** * **
15337330 CCCCGATCATTGGCACACCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
66 CCCCGATCATCAGAACACCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
15337395 CGACGAAGAAAAATACGACACCAGTACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
131 CGACGAAGAAAAAAACGACACCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATC
*
15337460 TGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCC
196 CGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCC
15337516 GTATGCCTAA
Statistics
Matches: 220, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
257 219 1.00
258 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.19
Consensus pattern (257 bp):
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGCACACACCCCCCCCGGCCC
CCCCGATCATCAGAACACCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
CGACGAAGAAAAAAACGACACCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATC
CGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCATATAA
Found at i:15337520 original size:26 final size:26
Alignment explanation
Indices: 15337469--15337521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15337459 CTGGTCCGAT
*
15337469 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15337495 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15337521 C
1 C
15337522 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15338348 original size:26 final size:26
Alignment explanation
Indices: 15338310--15338362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15338300 CCGGTCTGAT
*
15338310 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15338336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15338362 C
1 C
15338363 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15339269 original size:26 final size:26
Alignment explanation
Indices: 15339217--15339269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15339207 CTGGTCCGAT
*
15339217 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
15339243 CTTAGACTGGGAATGAACT-TCGCATG
1 CTTAGACTGGGAATGAACTCT-GCATG
15339269 C
1 C
15339270 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:15339987 original size:899 final size:899
Alignment explanation
Indices: 15338241--15342879 Score: 6181
Period size: 902 Copynumber: 5.2 Consensus size: 899
15338231 CCGATCACCG
* * * * *
15338241 AAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGATCCGGTC
1 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * *
15338306 TGATCTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
66 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
15338371 ACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-
131 ACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
15338435 ACCGGGTCCCCCTCTGCATGCTATCGATCCTGGTGCCACAACCCTC-GGTCTGGTCCAATCTTAG
196 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTC-GGTCCAATCTTAG
* * *
15338499 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAACGTGCGGGTGGGCGGGCGGGC
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGC----GGGCCGGCGGGC
* *
15338564 GGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
317 -AGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15338629 TTAGGCACATCGTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
381 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * ** *
15338694 TCCGTTAAGCCTTCACATGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATTATTTTAG
446 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15338759 AAACA-TTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGT
511 AAA-ATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15338823 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTTAAAACTCGAAGTGTACAA
575 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
15338888 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
640 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15338953 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
705 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* * * * *
15339018 CAAGATAAGGGCCAAGTACCAGCACCCATCGCACAAC-TGTGCCCACACCCCCCCCGGCCCCCCT
770 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACA-CCCCCCCGGCCCCCCC
* * * * **
15339082 GATCGCTGGAACCCTATTGCCGTCTGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGT
834 GATCGCTGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
*
15339147 G
899 A
* * *
15339148 AAGAAAAATGCGGCACCAGCCCATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTC
1 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * * * *
15339213 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGCATGCCAAAGTCA
66 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
15339278 ACCCACGAAATGAGCGTGCGGGCACTCAGCTGGCCAGAGGTGCAGGATGTGGAAGCCGAGGATCG
131 ACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* **** * * * *
15339343 ATCGGGTCCCCCACTACGTGCTGTCGATCCTGCTATTGCAACCTTCAATTCAGTCCAATCTTACA
196 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTCGGTCCAATCTTAGA
* *
15339408 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCCGGCGGGCAGGCACTAC
261 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGGCGGGCAGGCACTAC
** *
15339473 ACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACAT
326 GTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15339538 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
391 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
15339603 CTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTA
456 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTA
15339668 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
521 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
15339733 TTGTATTTTTATTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
586 TTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
15339798 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGACAGCAAACTTGTAAAATCT
651 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
15339863 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGG
716 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * **
15339928 CCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCTCCAGCCCCTTCGATCGCTGGAAC
781 CCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAAC
* * * * * ** * *
15339993 CCTAATGTCGTCGGTCAGGTTCTCTGACGATCCTCAGGTGATAGTGCCCCGACG
846 CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACA
* *
15340047 AAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAAGG
1 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-C-TGG
* *
15340112 --TGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * ** **
15340175 CAACCCAAGAAACGAGCATACGGGCGCTCAG-TCGGCCAGAGGGGCGGGATACAAAAGTTGGGGA
129 CAACCCACGAAACGAGCGTGCGGGCACTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * *
15340239 TCGATCGGGTCCCCTTCTACGTGCT-TCCAATCCTACTACCACAACCCTC-GATTCGGT-CAGAT
193 TCGATCGGGTCCCCCTCTACGTGCTGT-CGATCCTGCTGCCACAACCCTCAG-TTCGGTCCA-AT
* * * ** *
15340301 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGTGGGTGGAAGGG
255 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCG-GGCCGG-CGGG
** * * ** *
15340366 TGGGCACTACGTTGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGT
316 CAGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15340431 TTAGGTACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAGTGG
381 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
15340496 TCCCTTAAGCCTTCACGTGAAGATTCAAGGAAAGACGACTCGTTTTCTATTTTTCACGA-TTTTC
446 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * **
15340560 AAAACTTTTTACGGTTTGGGATTTTTTCAAATTTTTTCGGATGGAGTTTTTGCCCCAAACTTCAT
511 AAAA-TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
15340625 AGACGCGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
575 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15340690 GATTTTGTGACCATTTTAAAAAAGTGCCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAC
640 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15340755 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
705 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
*
15340820 CAATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
770 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * *
15340885 ATCGCCGGAATCGTAATGCCGTCGGTCAGGTTCTCCGGCGATGCCCCGACGATGGTGCCCTGACA
835 ATCGCTGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACA
*** * ** * * *
15340950 AAGAAAAATGTTGCACCAGCAAAT-CGTTGAGTCCAGCATGTGCTGTCGTAACCCTCGGTCCT-G
1 AAGAAAAATACGGCACCAGCACATGC-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGG
* *
15341013 TCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
15341078 CAACCAACGAAACGAGCGTG-GGGCACTCAGCTGGCCAAAGGGGCGGGATGCGCAAGCCGGGGAT
129 CAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * * * ** * *
15341142 CGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCTTCAGTTTGGTCCAATCTTA
194 CGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTCGGTCCAATCTTA
** * * *
15341207 GACTGATAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGATCGGGCGAGCGGCCAGG
259 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG---GGCCG-GCGGGCAGG
* * **
15341272 CACTATGTCGACCAGAGAGACGGGTTATGCAAGCCGTGGATCGATAGGGTGGTCA-GTGGGTTTA
320 CACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGGTGGGTTTA
* *
15341336 GGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCC
384 GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
15341401 CTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACGATTTTTGAAA
449 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * *
15341466 CTTTTTGCGGTTTAGGA-TTTTTAAAATTTTTTTGAAATGAGTTTTGGCCCCAAACTTGGTAGAC
514 ATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
15341530 GTGATCCTTGAAATTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
579 GTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15341595 TTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCGAACCTG
643 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15341660 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
708 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
15341725 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCGCCCGGCCCCCCCAATC
773 TATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * *
15341789 G-TCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCGCAACA
838 GCT-GGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACA
* * * *
15341851 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGTTCTGATC
1 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * *
15341916 TGATCTTAGACTAGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
66 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15341981 ACCCACGAAATGAGCGTGCGAGCACTCAGCCGGCCAGTGGGGTGGGATGCGCAAGCCGGGGATCG
131 ACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
15342046 GTCGGGTCCCCCTCTACGTGCTG-CAGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAG
196 ATCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCACAACCCTCAGTTCGGTCCAATCTTAG
* * * * * *
15342110 ATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGTGGGAAGGCGAGC
260 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGGCGGGCA---G-GC
** * *
15342175 ACTACGTCCTCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGG
321 ACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
15342240 TACACCTTCATATTTTTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
386 CACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
15342305 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGA--------C-------C-CG--TTTT----A-
451 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAAT
* * * *
15342347 ----A-GGTTTGGGATTTTTTAAAATTTTTTCAGATGGATTTTTGGCCCCAAACTTGGTAGACAT
516 TTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
15342407 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
581 GATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15342472 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGTCAGCAAACCTGTA
645 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
15342537 AAATCTCAAATGCTCTTTCAA-GGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
710 AAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
15342601 ATAAGGGCCAAGTGCCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCTCCGATCG
774 ATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * * * * *
15342666 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATCCTCCGACGATGATGCCCCGGCA
839 CTGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACA
* * * **
15342727 AAGAAAAATGCCGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
1 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* * *
15342792 TGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCA
66 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
15342857 ACCGACGAAATGAGCGGGCGGGC
131 ACCCACGAAACGAGCGTGCGGGC
15342880 GAGCGGGTGG
Statistics
Matches: 3282, Mismatches: 405, Indels: 121
0.86 0.11 0.03
Matches are distributed among these distances:
874 9 0.00
875 262 0.08
876 204 0.06
877 1 0.00
884 4 0.00
886 2 0.00
887 1 0.00
894 1 0.00
898 9 0.00
899 773 0.24
900 27 0.01
901 262 0.08
902 808 0.25
903 661 0.20
904 6 0.00
906 1 0.00
907 169 0.05
908 80 0.02
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTTCGGTCCAATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCCGGCGGGCAGGCACTAC
GTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTA
CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCTGGAAC
CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACA
Found at i:15340154 original size:26 final size:26
Alignment explanation
Indices: 15340116--15340168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15340106 CCAAGGTGAT
*
15340116 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
*
15340142 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
15340168 C
1 C
15340169 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:15341048 original size:26 final size:26
Alignment explanation
Indices: 15341019--15341071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15341009 CCTGTCCGAT
15341019 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15341045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15341071 C
1 C
15341072 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15341972 original size:26 final size:26
Alignment explanation
Indices: 15341920--15341972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15341910 CTGATCTGAT
*
15341920 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
15341946 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
15341972 C
1 C
15341973 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:15342832 original size:26 final size:26
Alignment explanation
Indices: 15342796--15342848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15342786 CCAGTCTGAT
*
15342796 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
15342822 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
15342848 C
1 C
15342849 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15343574 original size:26 final size:26
Alignment explanation
Indices: 15343538--15343590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15343528 CCAGTCCCAT
* *
15343538 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15343564 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15343590 C
1 C
15343591 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15344440 original size:26 final size:26
Alignment explanation
Indices: 15344411--15344463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15344401 CCGATCCGAT
*
15344411 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
15344437 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
15344463 C
1 C
15344464 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:15345923 original size:878 final size:886
Alignment explanation
Indices: 15342822--15347792 Score: 5750
Period size: 886 Copynumber: 5.7 Consensus size: 886
15342812 ACTCCGTATG
* * * * * * *
15342822 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCGACGAAATGAGCGGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
* * * * * *
15342887 -TGGCACTATG-CCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTCGGTGGG
66 CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
15342950 -TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * * ** *
15343014 GTCCTTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTGTCCATAATTTTC
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
15343079 AAAACTTTTTACGTTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCTAAACATGGT
261 GAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* **
15343144 AGATGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
326 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
15343209 GGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAATGGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15343274 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* * * * *
15343339 CCAATATAAGGGCCAAGTACCTGCACCCATCTCACATCATGTGCGCACA-CCCCCCGGTCCCTCC
521 CCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * * * *
15343403 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATCCTCCGACGATGATGCCTCGAC
586 GATCACCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *
15343468 AAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTGCCACAACCCTCGGTCCAGT
651 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA----C-G-CCA-T
* * * * *
15343533 CCCATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
709 --C--CGT-GTCTGGG-A-TGA---CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * *
15343598 AACCCCCGAAACGA-------GCG-T-------TCAGAGGGGCGGGATGCGCAAGC-GAGGAATC
764 AACACAGGAAACGAGCTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAGCAGAGG-ATC
* * * * * * *
15343647 GACCAGGG--CCCCTCTGCGTACTGCCGATCCTACTGCCGCAACCCTCAGTCC-AGTCTAAT
828 GATC-GGGTCCCCCTCTACGTGCTACCGATCCCACTG-CGCAACCCTCGGTCCGA-TCCAAT
* * *
15343706 CTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
* * * *
15343771 CGGGCACTACGTC-GACCAGAGAAACGGGATGCACAAGCCGTGGATCGATAGGTTGGTAGGTAGG
66 CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
15343835 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
15343900 GTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTC
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
15343965 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
15344030 AGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAACAATTCAGCTGAAAACTCAAAGTGTACA
326 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15344095 AGATTTTGTGACCATTTTAAAAATGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15344160 CCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTGTTGATGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
** * *
15344225 CCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGTGCACACCCCCCTGGCCCCCCC
521 CCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * *
15344290 GATCGCCGGAACCCCAA---TGCC-ATC-GG---T-C-A-GGTTCTCCGACGA---TGCTCCGAC
586 GATCACCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
15344341 GAAGAAAAATACGGCA-CTGACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
651 GAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCCGCAA----CG--CC-A
* *
15344405 TCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
708 TCCG----T-GTCTGGG-ATG-A---CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * *
15344470 CAAC-CTATGAAACGAGCGTGCGGGCACTCAGTTGGCTAGAGGGGCAGGATGC-ACAAGCCGAGG
763 CAACAC-AGGAAACGAGC-TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGA-AAGCAGAGG
* * * * * * *
15344533 ATCGATC-GGTCCCCCTCTGCATGCTACCGATCCTACTATCACAACCCTCGGTTCGGTCCAAT
825 ATCGATCGGGTCCCCCTCTACGTGCTACCGATCCCACT-GCGCAACCCTCGGTCCGATCCAAT
* *
15344595 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GG-GTGA--G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
* * * * *
15344656 CAGGCACTATG-CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGA
66 CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15344720 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
15344785 GTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
15344850 GAAACTTTTTGCGATTCAGGATTTTTTTAAAATTTTTTCGGAGGGAGTTTTGGCCCCAAACTTGG
261 GAAACTTTTTACGGTTCAGGATTTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
15344915 TAGACGTGATCCTTGTATTTTTATTGGCATGCCCAAAAAAATTCATCTAAAAACTTGAAGTGTAC
325 TAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
**
15344980 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAACAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
15345045 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGGTGAGGGATAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * * *
15345110 GCCAATATAAGGGCCAAGCACCAGCGCCCATCTCAAATCATGTGCGCACACCCCCCCGGCCCCTC
520 GCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * *
15345175 TGATCACCGGAACCCTAATGCTGCCGATTAGGTTCTCCGACGATCCTCCGGCGATGGTGCCCCGA
585 CGATCACCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * *
15345240 GGAAGAAAAATGTGACACTAGCACATGCCCGAGCCCAGCATATGCTGCCGCAA-GCC-T-CG-GT
650 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACGCCATCCGTGT
*
15345301 CT-GG-TG-TG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAGGAAACGAGC
715 CTGGGATGACGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAGGAAACGAGC
* * *
15345361 ATGCGGGCGCTCAGCCGGCCATAGGGG-AGGGATGCGAAAGTCAG-GGATTGATCGGGTCCCCTT
780 -TGCGGGCGCTCAGCCGGCCAGAGGGGCA-GGATGCGAAAG-CAGAGGATCGATCGGGTCCCCCT
* * *
15345424 CTACGTGCTACCGATCCCACGGTCGTAACCCTCGGTCCGATCCGAT
842 CTACGTGCTACCGATCCCACTG-CGCAACCCTCGGTCCGATCCAAT
* * * * *
15345470 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAACGGGCAGGTGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
* *
15345535 CGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTTGGTGGG
66 CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** * * * * * * *
15345599 TTTAGGTATGTCTTTATATTTTTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATATAGTG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** * * * *
15345664 GTCCCTTAAGCCTTCATATGAAGATTCATGGAAAGACGATTCGTTTTCTATTTTTCACGATTTTC
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
15345729 AAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15345794 AGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
326 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15345859 AGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15345924 CCTGTAAAATCTCAAATGCCCTTTAAGGGGTTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* * * ***
15345989 CCAATATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCGCATCCCCCTATCCCCCCC
521 CCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
** * * * * * **
15346054 GATCGTCAGAACCGCAATGCCGTCGATCAGGTTCTCCGACGATGCTTCGGTGATGG-GCCCCGAC
586 GATCACCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
** * **
15346118 GAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA--CC-TTTG-GTC
651 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACGCCATCCGTGTC
** * * * * ** * * * * *
15346179 -CAG-T-CCG-AT-CTTACACTGAGAATGAACTCC--A---C-ATGTTTAGACTGGGAATGAACT
716 TGGGATGACGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAGGAAACGAGCT
* * * * * * *
15346233 -C---TG-T-A---TGCCAGAGGGGCAGGATGCGCAAGCCGAGGATC-AGCTGGGTCCCCCACTG
781 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAGCAGAGGATCGATC-GGGTCCCCCTCTA
* * *
15346288 CGTGCT---G------C--CGCAACCCTCAGTTCGGTCCAAT
845 CGTGCTACCGATCCCACTGCGCAACCCTCGGTCCGATCCAAT
* * * *
15346319 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
* * * *
15346384 CAGGCACTACG-CCGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGG
66 CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
15346448 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
15346513 GTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCATTTTTTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
15346578 GAAAC-TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15346642 AGATGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
326 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
15346707 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAA
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15346772 CCTATAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
*
15346837 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG--CCCCC
521 CCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * *
15346899 GATCACCGAAACCCCAATGCTGTCTG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGG
586 GATCACCGGAACCCCAATGCTG-CCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
15346963 CAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCTATCCAG
650 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACGC-C-ATCC-G
* *
15347028 TTCGATCTTAAACTGGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGT
712 -T-G----T---CTGGG-ATG---A-CGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * ** *
15347093 CAACCCACGAAACGAGCTTGTGGGCGCTCAGCC-ACCAGAGGGGTGGGATGCGCAAGCCAG-GGA
763 CAACACAGGAAACGAGC-TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAG-CAGAGGA
* * ** ** * *
15347156 TCGGTTGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCTGCAACCTTCGGTCCAATCCAAT
826 TCGATCGGGTCCCCCTCTACGTGCTACCGATCCCACTGC-GCAACCCTCGGTCCGATCCAAT
* * * * *
15347218 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGTGGGCGGGTGGGCA-
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGG-AG
15347281 GGCGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
64 GGCGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15347345 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGCAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
15347409 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * **
15347474 TTGAAACTTTTTACGACTT-GGGATTTTTTTAAATTTTTTTGGAAGGAGTTTCAGCCCCAAACTT
259 TTGAAACTTTTTACG-GTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
15347538 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGT
323 GGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
15347603 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * **
15347668 AAACCTGTAAAATCTCCAATGCTCTTTAAGGGGCTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* * *
15347733 GGGCCAATATAAGGGCCAAGAACCAGAACCCATCACACATCATGTGCGCACACCCCCCCG
518 GGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
15347793 NNNNNNNNNN
Statistics
Matches: 3519, Mismatches: 434, Indels: 252
0.84 0.10 0.06
Matches are distributed among these distances:
845 48 0.01
846 54 0.02
847 5 0.00
848 286 0.08
849 246 0.07
851 1 0.00
852 2 0.00
855 1 0.00
858 1 0.00
859 1 0.00
860 4 0.00
861 39 0.01
862 2 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 1 0.00
869 2 0.00
870 3 0.00
871 16 0.00
872 25 0.01
873 122 0.03
874 86 0.02
875 99 0.03
876 17 0.00
877 86 0.02
878 333 0.09
879 195 0.06
880 2 0.00
881 4 0.00
882 3 0.00
883 5 0.00
884 64 0.02
885 254 0.07
886 681 0.19
887 75 0.02
888 4 0.00
889 119 0.03
890 9 0.00
891 3 0.00
893 2 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 10 0.00
898 95 0.03
899 442 0.13
900 62 0.02
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAGGG
CGGGCACTACGTCAGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCACCGGAACCCCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACGCCATCCGTGTC
TGGGATGACGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACAGGAAACGAGCT
GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAGCAGAGGATCGATCGGGTCCCCCTCTAC
GTGCTACCGATCCCACTGCGCAACCCTCGGTCCGATCCAAT
Found at i:15347070 original size:26 final size:26
Alignment explanation
Indices: 15347034--15347086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347024 CCAGTTCGAT
15347034 CTTAAACTGGGAATGAACACCGTATG
1 CTTAAACTGGGAATGAACACCGTATG
* *
15347060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACACCGTATG
15347086 C
1 C
15347087 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACACCGTATG
Found at i:15349906 original size:26 final size:26
Alignment explanation
Indices: 15349855--15349907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15349845 CCTGTCCGAT
* *
15349855 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15349881 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15349907 C
1 C
15349908 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15351686 original size:26 final size:26
Alignment explanation
Indices: 15351657--15351709 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15351647 CCGGTCTGAT
*
15351657 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15351683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15351709 C
1 C
15351710 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15353318 original size:902 final size:902
Alignment explanation
Indices: 15348964--15354416 Score: 7362
Period size: 903 Copynumber: 6.0 Consensus size: 902
15348954 CTGATCCAAT
* * * * ** *
15348964 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTGTGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
15349029 CGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGACCGGGTCCCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
15349094 TGCTGCTGCAACCCTC-AGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* *
15349158 ACCAACGAAACGAGCGGGC--G--GGCGGGCGGGCACTACTGCCGACCAGAGAGACGAGATGCGC
195 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTAC-GCCGACCAGAGAGACGGGATGCGC
*
15349219 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
15349284 CATTTTTATGGCTTGTAAATTCATACAATGGTCCACTTAAGCCTTCACGTGAAGTTTCCATGGCA
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTT-CATGGC-
* * * *
15349349 AAGGACGACTCGGTTTTTCTATTTTTCACCAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTT
386 AA-GACGACTC--ATTTTCTATTTTTCA-CGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTT
* * * *
15349414 AAATTTTTTTCGAAAGGAGTTTTTGGCCCCAAAACTTTAGGTAGACGTGATTCCTGTTTTATTTT
446 AAAATTTTTTCGGAAGGAG-TTTTGGCCCC-AAAC-TT-GGTAGACATGA-TCC--TTGTATTTT
* * * *
15349479 TGTTGGCCATGCCATAAAAAAATTCTGCTAAAAACTCGAAGTGTATAAGA-TTTGTGGCCATTTG
504 TGTTGG-CATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
15349543 AAAAAAGTGTCCCCATTTCAGACTCTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
567 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * * *
15349608 CTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAAGGGGCAAATATAAGGGCCAAGT
632 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
15349673 ACCAGCACCCATCGCATATCATGTGCGCACACCCCCCCGACCCCTCCGATCACCGGAAACCCAAT
697 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGA-CCC-CCGATCGCCAGAACCCCAAT
** * ** * * *
15349738 GCCGCTAGTCAGGTTCTCCAACGATGCTCTAATGATGGTGCCTC-AGCGAAGAAAAATGTGGCAC
760 GCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCAC
* * * * * *
15349802 CAGCACATGCCTGAGCCCAGTATGTGCTGCCGTAACCCTCGGCCCTGTCCGATCTTAGACTAGGA
824 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGA
15349867 ATGAACT-TCGTATG
889 ATGAACTCT-GTATG
* * * *
15349881 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
15349946 CGGGCAGAGGGGTGGGATGCACAAGCCGAGGATCGATTGGATCCCCTTTTACGTGCTGCCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15350011 TGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *** *
15350076 CCGACGAAACGAGCGAGTGGGTAGGCGGACGGGCACTACGTCGGGTAGAGAGACGGGATGTGC-A
196 CCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * *
15350140 GCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGTACAACTTCATATTTCTGCATGCCAATG-CA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
15350204 TTTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAGGA
326 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
15350269 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
15350334 TTGGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTTTTTTTGTTGGTACGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15350399 AACAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15350464 CGGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15350529 GTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
15350594 TCATGTGCGCACACCCCCCCCGACCCCCCCGATCGCCAGAAACCCAATGCCGCTGGTCAGGTTCT
715 TCATGTGCGCACA-CCCCCCGGA--CCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * *
15350659 CCAACGATGCTTCGATGATGGTGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
777 CCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
15350724 AGTATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACT-TCGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCT-GTATG
* * * *
15350785 CTTAGACTGGGAATGAACTCCAT-TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * ** *
15350849 CGGGCAGAGGGGTGGGATGCACAAGCCGAGGATCGATTGGATCCCCTTTTATGTGCTGCCGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
15350914 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* ** * ** * ** *
15350979 CCGACGAAACAAGCAAGTGGGTGGGCGGGCGGGCACTACGTCGAGTAGAGAGATGGGATGCGC-A
196 CCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * *
15351043 GCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGTACAACTTCATATTTCTGCATGCCAATG-CA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15351107 TTTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
326 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
15351172 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGCGATTTTTTTAAATATTT
390 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT-TTT
* * * *
15351237 TT-GGAAGGATTTTTGGCCCTAAACTTGGTAGTCATGATCGTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
** *
15351301 AAGCATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15351366 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* **
15351431 AGTTCTCAAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
15351496 ATCATGT--GCACACCCCCCGGACCCCTGATCACCACAACCCCAATGCCGTCGGTCAGGTACTCC
714 ATCATGTGCGCACACCCCCCGGACCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
** ** *
15351559 AGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCATCACCAGCACATGCCCGAGCCTAG
779 AGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
15351624 CATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
844 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
*
15351683 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * *
15351748 TGACCAGAGGGGCGGGATGTGCAAGCTGGGGATTCG-GCTGGGTCCCCCTCTGCGTGTTGCTGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGATC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
15351812 CCTCCTGCCGCAACCCTC-AGTCC-G-CCGATGTTATATTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * *
15351874 CAACCGACGAAACGAGCAGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCA
193 CAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCG
** * *
15351939 CAAGCCGTGTCTCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
15352004 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
15352069 GACAACTCGTTTTCTATTTTTCATGATTTTTG-AACTTTTTACGGTTCGGGATTTTTTAAAATTT
388 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * *
15352133 TTCTC-GAAGGATTTTTAGCCCCAAACTTAGTAGACATGATCGC-TGTATTTTTGTTGGCATGCA
453 TT-TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC-CTTGTATTTTTGTTGGCATGCA
** *
15352196 CAAAAGCATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
516 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* **
15352261 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTACAAGGGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
15352326 GTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCTATCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
15352391 CACATGATGTGCGTACACCCCCCCCGGACCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGT
711 CACATCATGTGCG--CACACCCCCCGGACCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGT
* * * * *
15352456 TCTCCGGCGATGCTCCGACGATGGTGCCCAGGCGAAGAAAAATGCAGCACCATCACATGCCCGAG
774 TCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
15352521 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATC
839 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
* *
15352585 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * *
15352650 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
15352715 AACCACCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15352780 TCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCATAGAGATGGGAAGCGCAA
196 CCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
* * *
15352845 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATACCAATACCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15352910 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
15352975 GACTCATTTTTTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGAGTTTTTAAAATTTTTT
391 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
15353040 CGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15353105 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTATCCCCATTTC
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15353170 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
586 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
15353235 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCACACAT
651 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * *
15353300 CATGTGTACACACCCCCCGGCCCCCCCGATCGCCAAAACCCCAATGCCGTCGGTCAGGTTCTCCG
716 CATGTGCGCACACCCCCCGG-ACCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCA
* * * * * *
15353365 GTGATGCTACGGCGATGGTGCCCCGACGAAGGAAAATGCGGCACCAGCACATTCCTGAGCCCAGC
780 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
15353430 ATGTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
845 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
* * * * * *
15353488 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTGAACCCATGAAACGAA-AGTGCGGGTGCTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAG
* * * * * *
15353552 TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTTTGTGTGTTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * * * **
15353617 TTGCTACCATAACCCTCGGTCTGGT-TCGATCTTAGACTAGGAATGAACTACTTATGCCTAAGGG
130 CTGCTACCGCAACCCTCGATCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * * ** *
15353681 AACCAACGAAATGAGCGGGAGGGCAGGCGGGCAGGCACTACATCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGC
* * * **
15353746 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGACACATCTTCATATTTTTGTGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
15353811 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
15353876 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGAGTTTTTAAAATTTT
389 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
15353941 TTCGAAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTTTTATTTTTGTTGGCATGCACA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACA
* *
15354005 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCTAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
15354070 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGT
583 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
15354135 GAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15354200 CATCATGTGCGCACACCCCCCGG-CCCCCTGATCGCCGGAACCCCAATGCCGCTGGTCAAGTTCT
713 CATCATGTGCGCACACCCCCCGGACCCCC-GATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
*
15354264 CCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAATATGCGGCACCAGCACATGCCCGAGCCC
777 CCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
15354329 AGCATATGCTGCCACAACCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
15354390 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15354417 TTAGACTAGG
Statistics
Matches: 4098, Mismatches: 401, Indels: 89
0.89 0.09 0.02
Matches are distributed among these distances:
897 4 0.00
898 533 0.13
899 213 0.05
900 49 0.01
901 52 0.01
902 468 0.11
903 1863 0.45
904 479 0.12
905 5 0.00
906 3 0.00
907 11 0.00
908 2 0.00
909 3 0.00
910 10 0.00
911 22 0.01
912 26 0.01
913 14 0.00
915 8 0.00
916 1 0.00
917 186 0.05
918 23 0.01
919 90 0.02
920 18 0.00
921 15 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGACCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAG
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
Found at i:15353498 original size:26 final size:26
Alignment explanation
Indices: 15353462--15353514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15353452 CTGGTCTGAT
15353462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15353488 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15353514 C
1 C
15353515 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15354400 original size:26 final size:26
Alignment explanation
Indices: 15354364--15354464 Score: 193
Period size: 26 Copynumber: 3.9 Consensus size: 26
15354354 CTGGTCTGAT
15354364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15354390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15354416 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15354442 CTTAGACTGGGAATGAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
15354465 GTGCCTAAGT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15355495 original size:720 final size:720
Alignment explanation
Indices: 15354627--15356603 Score: 3068
Period size: 745 Copynumber: 2.7 Consensus size: 720
15354617 ACTTCATATT
** **
15354627 TTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
1 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
15354692 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
66 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
* *
15354757 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
15354822 AAAATCTCAAATGGTCTTTAAGAGGGTGTGAGTCCTCGAGGTTTGATGAGTGATAGGGGGCCAAT
196 AAAATCTCAAATGGTCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
15354887 ATAAGGGCCAAGTGCCAGCACCCACCGCACATCATGTGCGCACAACCCCCCCGACCCCACCGATC
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGACCCC-CCGATC
*
15354952 C-CCGAAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCACCGGTGAA
325 CTCAG-AACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC-CCGGTGAA
* * * * **
15355016 GAAAAATGAGGTACCAGCACATGCCCGAGCCCAGCATATTTTGCCGTAACCCTCAG-T-CTGGTC
388 GACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGATACTGGTC
* *
15355079 TGATCTTAGACTGGGAATGAACCCCGTATGCGTAAACCAACCGACGAAACGAGCGGGCGGGAGGG
453 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGGAGGG
*
15355144 CGGGTGGGCACTATGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
518 CGGGTGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
15355209 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACA
583 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACA
* *
15355274 ATGGTCCCTTAAGACTTCACTTGAAGTTTAATTGCAAGACGACTCGTTTTCTATTTTTCATGATT
648 ATGGTCCCTTAAGACTTCACTTGAAGTTTAATGGCAAGACGACCCGTTTTCTATTTTTCATGATT
*
15355339 TTTGAAAC
713 TTTAAAAC
*
15355347 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAAG
1 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
15355412 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
66 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
*
15355477 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
15355542 AAAATCTCAAATGGTCTTTAAGTGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGGTCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
*
15355607 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA-AACCCCCCGGCCCCCCCCGATC
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGG-ACCCCCCGATC
* * *
15355671 GTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAGGGTGCCCTGGTGAAG
325 CTCAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC-GGTGAAG
* * *
15355736 ACAAATGCGGCACCAGCACATGTCGGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCTATCCGA
389 ACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA-CC-C--T-C-A---GA
*
15355801 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAACCAACC
445 ---T--ACT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACC
* * *
15355866 GACGAAACGAGCGGGCGGGAGGGCGGGTGGGCACTATGCCGGCCAGAGAGACTGGATGCGCAAGC
495 GACGAAACGAGCGGGCGGGAGGGCGGGTGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGC
15355931 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
560 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
15355996 TTTTTGTCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACTTGAAGTTTAATGGCAAGACGA
625 TTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACTTGAAGTTTAATGGCAAGACGA
15356061 CCCGTTTTCTATTTTTCATGATTTTTAAAAC
690 CCCGTTTTCTATTTTTCATGATTTTTAAAAC
* * *
15356092 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACATGGTAGACG
1 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
15356157 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
66 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
*
15356222 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
131 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
15356287 AAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
196 AAAATCTCAAATGGTCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
*
15356352 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-ACCCCCCGGGCCGCCCCGATC
261 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGACC-CCCCGATC
* ** *
15356416 TTCAGAACCCCAATGCCACTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAG
325 CTCAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCGGTGAAG
* * * *
15356481 ACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTC-GATCCT-ATCC
389 ACAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGATACTGGTCT
** * *
15356544 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
454 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGG
15356604 CGCTCAGCCG
Statistics
Matches: 1154, Mismatches: 71, Indels: 65
0.89 0.06 0.05
Matches are distributed among these distances:
718 2 0.00
719 161 0.14
720 294 0.25
721 2 0.00
723 2 0.00
724 1 0.00
725 1 0.00
726 1 0.00
728 1 0.00
730 2 0.00
732 2 0.00
735 4 0.00
736 2 0.00
738 1 0.00
740 1 0.00
741 3 0.00
743 2 0.00
744 6 0.01
745 663 0.57
746 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (720 bp):
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGGTCTTTAAGAGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGGACCCCCCGATCC
TCAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCGGTGAAGAC
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGATACTGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGGGCGGGAGGGCGG
GTGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATG
GTCCCTTAAGACTTCACTTGAAGTTTAATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTT
AAAAC
Found at i:15355831 original size:26 final size:26
Alignment explanation
Indices: 15355802--15355854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15355792 CCTATCCGAT
*
15355802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15355828 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15355854 C
1 C
15355855 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15358168 original size:26 final size:26
Alignment explanation
Indices: 15358130--15358182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15358120 CCGGTCCGAT
*
15358130 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15358156 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15358182 C
1 C
15358183 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15359220 original size:26 final size:26
Alignment explanation
Indices: 15359191--15359243 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359181 CCGATCTGAC
15359191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15359217 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15359243 C
1 C
15359244 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15361642 original size:26 final size:26
Alignment explanation
Indices: 15361613--15361665 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15361603 TAGGTCCGAT
15361613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
15361639 CTTAGACTGGGAATGTGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15361665 C
1 C
15361666 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15362537 original size:26 final size:26
Alignment explanation
Indices: 15362508--15362560 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15362498 CCGATCCGAT
15362508 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15362534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15362560 C
1 C
15362561 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15363947 original size:902 final size:900
Alignment explanation
Indices: 15360891--15364378 Score: 4822
Period size: 896 Copynumber: 3.9 Consensus size: 900
15360881 CCTCAGTCCA
* * ** * *
15360891 GTCTGATCTTAGACTGGGAATGAACTCCTTGTGCCTAAGCCAATTGAGGAAACGAGCGGGTGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
15360956 GGGCGTGCAGGCACTACG-TCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATA-GGTGGT
66 AGGCG-GCA-GAACTACGCT-GGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGT
* * *
15361019 AGGTGGGTTTAAGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
128 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * * *
15361084 CACAAAGGTCCCTTAGGCATTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAT
193 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
* *
15361149 GATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAATTTTGGCCCCAA
258 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
15361214 ACTTGATAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAA
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
15361279 GTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
15361342 CAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
15361407 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCAGATCATGTGCGCACACCCCCCCGG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * **
15361472 CCCCCCCGATCCTC-GAAACCCAACGTCGTCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTG
583 -CCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
** *
15361536 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGCAACCCTCG
647 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCG
* * **
15361601 GT-TAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTGCTCCGTATG
712 ATCCA-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15361665 CCTAAGTCAACCCACGAAACGAGCGTGCA-GGCGCTCAACCAGCTAAAGGGGCTA-GATGCACAA
776 CCTAAGTCAACCCACGAAACGAGCGT-AAGGGCGCTCAACCGGCCAGAGGGG-TAGGATGCGCAA
* * * ** * * *
15361728 GCCGGGGATCGGCC-AGTCCCCCTCCGCGTGCTGCCGATCCTACTAACGCAACCCTCGGTTTG
839 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GTTGCCCAACCCTTGGTCTG
*
15361790 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
** * * *
15361855 --G-GGC---ACTACGCCAGCCAGAGAGACATGATGCGCAAGTCGTGCATCGATAGGTTGGTAGG
66 AGGCGGCAGAACTACGCTGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
*
15361914 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
131 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
15361979 AACGGTCCCGTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAT
196 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
* * * * * *
15362044 TTTTGAAACTTTTTGCAGTTAGGGATTTTTTAAAATTTCTTT-GGAAGCAGTTTTGGCTCCAAAC
261 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCAGAAGGAGTTTTGGCCCCAAAC
* * *
15362108 ATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15362173 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15362238 GCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
15362303 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCA
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-
* * *
15362368 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTACGATGCTCCGACGATGGTGCC
584 CCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* ** *
15362433 CCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGAT
649 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGAT
15362498 CC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
714 CCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
** * *
15362562 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAACCGGCCAGAGGGGTGGGATGCGCAAGCCG
778 TAAGTCAACCCACGAAACGAGCGTAAGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCG
*** * * * * *
15362627 GGGATCGATGGGGTCCCCCTCTGCATGTTGTCGATCGTGCTGCCGCAACCCTTGGTCTG
843 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTGCC-CAACCCTTGGTCTG
* * * * *
15362686 GTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAATCGACGAAAC-A---AGTGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
15362747 AGGCGG--GCACAACG-TCGGCCAGAGGGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
66 AGGCGGCAGAACTACGCT-GGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAG
* *
15362809 TTGGGTTTAGGCACATCTTCATATTCCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
130 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
15362874 CAATGGTCCCTTAAGCCTTCACATCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
195 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * * *
15362939 TTTTTGAAACTTTTTATGGTTCGGGATTTTTCAAAATTTTTTGAAAAGGAGTTTTGGCCCCAAAC
260 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
*
15363004 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* **
15363069 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAACTACTGGCA
390 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15363134 GCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
15363199 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT-ATGTGCGCACACCCCCCCGGCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * * * *
15363263 CCCAGATCGTCAGAACCCCAATGTCGTCGGTGAGGTTCTCCGGCGATGCCCCGGCGATGGTGCCC
585 CCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * * * *
15363328 CGATGAAGAAAAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTC
650 CGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATC
* * * * * *
15363393 CAGTCCTATCTTAGACTGGGAATTAACTCTGTTTGCTTAGACTGCGAATGAACTCCATATGCCTA
715 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
15363458 AGTCAACCCACGAAATGAGTGTAAGGGCACTCAGCCGGCCAGAGGGGTAGGATGCGCGAGTCGAG
780 AGTCAACCCACGAAACGAGCGTAAGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCGGG
*
15363523 GATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGTTGCTCCAACCCTTGGTCTG
845 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTGC-CCAACCCTTGGTCTG
* * * * *
15363580 GTCTAATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAATGAGCGGGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * *
15363645 AGGCAGGCGAGAACTATGCTGGCTAGAGAGACGGGATGCGCAAG-CTGTGGATCGATAGGGTGGT
66 AGGC-GGC-AGAACTACGCTGGCCAGAGAGACAGGATGCGCAAGTC-GTGGATCGATAGGGTGGT
* *
15363709 AGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCA
128 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
15363774 TACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGCCAAGACAACTCATTTTATATTTTTCAC
193 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAC
** * *
15363839 GATTTTCCAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
258 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * ** *
15363904 ACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAAGCGAT
323 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
15363969 GTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
388 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * * *
15364034 CAGCAAACCTGTAAAGTCTGAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAAGGA
453 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
15364099 TAGGGTGCCAATATAAGGGCCACGTACCAGCACCCATCACACATCATGTGCGGACA--CCCCCGG
518 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
** * * * * *
15364162 CCCCCCGATCGTCGGAACCCCAATAAC-ACTGGTCAGGTTCTCTGGCGATGGTCCGACGATGTTG
583 CCCCCCGATCGTCGGAACCCCAATGTCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* *
15364226 CCCCGACGAAGAAAAATGTGGCACCAGCACATG-CCAAGCCCAGCATGTGCTGCCGCAACCCTTG
647 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCG
*** ** *
15364290 ATTTGGTTTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
712 ATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
*
15364355 CTAAGTCAACCAACGAAACGAGCG
777 CTAAGTCAACCCACGAAACGAGCG
15364379 GCCGGGCGGG
Statistics
Matches: 2290, Mismatches: 265, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
891 38 0.02
892 248 0.11
893 18 0.01
894 491 0.21
895 255 0.11
896 527 0.23
897 1 0.00
898 9 0.00
899 60 0.03
900 103 0.04
901 89 0.04
902 440 0.19
903 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
AGGCGGCAGAACTACGCTGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGAT
TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
CCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCGTAAGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCGGGG
ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTGCCCAACCCTTGGTCTG
Found at i:15364338 original size:26 final size:26
Alignment explanation
Indices: 15364302--15364354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15364292 TTGGTTTGAT
15364302 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15364328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15364354 C
1 C
15364355 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15365954 original size:26 final size:26
Alignment explanation
Indices: 15365925--15365977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15365915 CCGATCCGAT
15365925 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15365951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15365977 C
1 C
15365978 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15366833 original size:26 final size:26
Alignment explanation
Indices: 15366797--15366849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15366787 GTTGGCTTAG
15366797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15366823 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15366849 G
1 G
15366850 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15367729 original size:26 final size:26
Alignment explanation
Indices: 15367699--15367751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15367689 GTTAACTTAG
15367699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15367725 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15367751 G
1 G
15367752 ATCAGGTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15368613 original size:26 final size:26
Alignment explanation
Indices: 15368583--15368635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15368573 GTTGACTTAG
* *
15368583 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15368609 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15368635 G
1 G
15368636 ATCGGACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15372144 original size:710 final size:719
Alignment explanation
Indices: 15370773--15372233 Score: 2120
Period size: 710 Copynumber: 2.0 Consensus size: 719
15370763 AAGCAAAAAA
* *
15370773 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGTTGGGCTCGAGTA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
* * *
15370838 TGTGCTGGTGCTGCATTTTTCTTCGTCAGGGCACCATCGTTGGAGCATCGCCAAAGAACCTGACA
66 TGTGCTGGTGCCGCATTGTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACA
*
15370903 GGCGGCATTGGGGTTCCCGCGATCGGGGGGGTCGAGGCCGGTGTGCGCACATGATGTGCGATGCG
131 GGCGGCATTGGGGTTCCCGCGATCGGGGGGGTCGAGGCCGGTGTGCGAACATGATGTGCGATGCG
* * * *
15370968 TGCTGGTGCTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGACCTCACACCCCTT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
15371033 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGAGGACA
261 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATGAGGACA
* *
15371098 CTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCAAAATTTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCAAAAGTTTTTTATGCATGC
** * *
15371163 CAACAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCTTAAGCTCCTTCTGAAAAAATTTTA
391 CAACAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** *
15371228 AAAAATCCCGAACCGTAAAAAGTTTTTAAAATTGTGAAAAATAGAAAACGAGTCTTCTTGCCATG
456 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
15371293 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGACA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGACA
* * ** *
15371358 TGCATAAATATGAAGATGTGCGAAAAATCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
586 TGCAGAAATATCAAGATGAACGAAAAACCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
** * * *
15371423 GTCTCTCTGGCCGGCGTAGTG-C-CCC-CCC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
651 GTCTCTCTGGCCAACGTAGTGCCACCCGCCCGCCGCCCACACGTTTCATCGGTTGGCTTAGGCAT
15371484 ACGG
716 ACGG
* * * * *
15371488 AGTTCATTTCCAGTCTAAGATCGGATCTGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
** *
15371553 TGTGCTGGTGCCGCATTGTTCTTCGTC-GTGGCACCATCGTCGGAGCATCGCCGGAGAACTTGAC
66 TGTGCTGGTGCCGCATTGTTCTTCGTCAG-GGCACCATCGTCGGAGCATCGCCAAAGAACCTGAC
* * *
15371617 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CTG-GG-GGGTGTGCGAACATGATGTGCGATG
130 AGGCGGCATTGGGGTTCCCGCGATCGGGGGGGTC-GAGGCCGGTGTGCGAACATGATGTGCGATG
* * **
15371679 GGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGGGAACTCACACCCC
194 CGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
* * * *
15371744 CTTAAAGAA-CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTCAAGTGTATG-AATGGGG
259 CTTAAA-AAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATGAGG
* * *** **
15371807 ACAGTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAAGTTTTTTATGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCAAAAGTTTTTTATGCA
*
15371872 TGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
388 TGCCAACAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
15371936 TTAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
453 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
15372000 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAACATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCG
* * * * * *
15372065 GCATGCAGATATATCAAGATGAAAC-TAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCA
583 ACATGCAGAAATATCAAGATG-AACGAAAAACCACCTACCACCCTATCGATCCACGACTTGCGCA
* * *
15372129 TCTCGTCTGTCTGGCCAACGTAGTGCCCACCCGCCCGTCCGCCCACACGTTTCATCGGTTGGGTT
647 TCCCGTCTCTCTGGCCAACGTAGTG-CCACCCGCCCG-CCGCCCACACGTTTCATCGGTTGGCTT
15372194 AGGCATACGG
710 AGGCATACGG
*
15372204 AGTTCATTCCCAGTCTAAGATCATATCAGA
1 AGTTCATTCCCAGTCTAAGATCAGATCAGA
15372234 TTGAGGGTAC
Statistics
Matches: 660, Mismatches: 76, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
710 174 0.26
711 71 0.11
712 70 0.11
713 132 0.20
714 9 0.01
715 145 0.22
716 59 0.09
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGCATTGTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACA
GGCGGCATTGGGGTTCCCGCGATCGGGGGGGTCGAGGCCGGTGTGCGAACATGATGTGCGATGCG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATGAGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCAAAAGTTTTTTATGCATGC
CAACAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGACA
TGCAGAAATATCAAGATGAACGAAAAACCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
GTCTCTCTGGCCAACGTAGTGCCACCCGCCCGCCGCCCACACGTTTCATCGGTTGGCTTAGGCAT
ACGG
Found at i:15373846 original size:900 final size:900
Alignment explanation
Indices: 15371480--15374007 Score: 3649
Period size: 904 Copynumber: 2.8 Consensus size: 900
15371470 GTTGGCTTAG
* *
15371480 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCTGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15371545 CTCGGGCATGTGCTGGTGCCGCATTGTTCTTCGTCGTGGCACCATCGTCGGAGCATCG-CCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCC-GAG
* * *
15371609 AACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGAACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCAGGGGGGTGTGCGCACATGATGTG
* **
15371674 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGGGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
15371739 ACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTCAAGTGTATG-AAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15371803 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAA-GTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATG-TTTTT
* *
15371867 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* ** *
15371932 AATTTTAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15371996 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAACATGGC
517 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
15372061 ATTGGCATGCAGATATATCAAGATGAAACTAAACCCACCTATCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
15372126 GCATCTCGTCTGTCTGGCCAACGTAGTGCCCACCCGCCCGTCCGCCCACACGTTTCATCGGTTGG
647 GCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACACGTTTCATCGGTTGG
* * * * *
15372191 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCAGATTGAGGGTACCGATAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTACCGACAGCAGGAT
** * * * *
15372256 CGGTAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGTTCATCCCGCCCTTCTGGCCGGTTG
776 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGTTG
* *
15372321 GGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
841 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
15372381 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15372446 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGAGGCACCATCACCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCCGAGA
* * * *
15372511 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGGGGTGTGCGCACATGTTGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGG-CAGGGGGGTGTGCGCACATGATGTG
* *
15372576 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTCTCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
15372641 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ACAA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AA
* *
15372705 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
* *
15372770 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * * *
15372835 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAATTTGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15372900 TGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGT
517 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15372965 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
582 ATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
15373030 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTTGTTTCATCGGTTGG
647 GCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACACGTTTCATCGGTTGG
* * ** * *
15373095 CTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGTAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTACCGACAGCAGGAT
*
15373160 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGTTG
776 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGTTG
* *
15373225 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15373285 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15373350 CTCAGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCCGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCCGAGA
* * *
15373415 TCCTGTCCGGCGGCATTGGGGTTCTGGCGATC-GGGGG-AGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCG
* *
15373478 ATGGGTGCTGGTATTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTGC-AGAACTCACA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACTCACA
15373542 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15373607 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGT
* * * *
15373672 GCATGCCAACAAAAATACATGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCTTCCTAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * ** *
15373737 TATTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15373802 CCATGAAACTTCACGTGAAGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAACTGGCAT
519 CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * ** *
15373867 TGGCGCACAGAAATAAGAAGATGTACCAAAACTCACCTACCACCCTATCGATCCACATCGTGCGC
584 TGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15373932 ATCCCGTCTCTCTGACCGGCATAGTGCTCGCCCGCACGCCCG--CTCA--TTTCGTCGGTTGGGT
649 ATCCCGTCTCTCTG-CCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACACGTTTCATCGGTTGGCT
*
15373993 TAGGTATACGGAGTT
713 TAGGCATACGGAGTT
15374008 TTTAGCTGAA
Statistics
Matches: 1449, Mismatches: 166, Indels: 29
0.88 0.10 0.02
Matches are distributed among these distances:
896 26 0.02
898 2 0.00
899 1 0.00
900 474 0.33
901 146 0.10
902 142 0.10
903 146 0.10
904 512 0.35
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCCGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACACGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTACCGACAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGTTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15374299 original size:355 final size:355
Alignment explanation
Indices: 15373648--15374319 Score: 1015
Period size: 355 Copynumber: 1.9 Consensus size: 355
15373638 TGTACACTTC
* *
15373648 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACATGGATCACATCTACCAAGTTTG
1 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTG
** * *
15373713 GGGCCAAAAGTCCTTCCTAAAAAATATTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTG
66 GGGCCAAAACCCCTTCCTAAAAAATATTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTG
*
15373778 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAAGGACCATTGTATGA
131 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGCCTTAAAGGACCATTGTATGA
* *
15373843 ATTTACAAGCCATAAAACTGGCATTGGCGCACAGAAATAAGAAGATGTACCAAAACTCACCTACC
196 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTACCAAAACTCACCTACC
* * *
15373908 ACCCTATCGATCCACATCGTGCGCATCCCGTCTCTCTGACCGGCATAGTGCTCGCCCGCACGCCC
261 ACCCTATCGATCCACAGCGTGAGCATCCCGTCTCTCTGACCGGCATAGTGCCCGCCCGCACGCCC
15373973 GCTCATTTCGTCGGTTGGGTTAGGTATACG
326 GCTCATTTCGTCGGTTGGGTTAGGTATACG
*
15374003 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACATCTACCATGTTTG
1 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTG
* * * * * *
15374068 GGGCCAAAACCCCTT-TTGAAAAAATTTTAAAAAATCCCGAACTGCAAAACGTTTCGAAAATCGT
66 GGGCCAAAACCCCTTCCT-AAAAAATATTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
* * * *
15374132 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTAAAGGCTTAAGGGACCATTGTATG
130 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGCCTTAAAGGACCATTGTATG
** * * *
15374197 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAGC-CACCTA
195 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTACC-AAAACTCACCTA
* * ** *
15374261 CCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
259 CCACCCTATCGATCCACAGCGTGAGCATCCCGTCTCTCTGACCGGCATAGTGCCCGCCC
15374320 ACCCGCTCGC
Statistics
Matches: 282, Mismatches: 33, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
354 1 0.00
355 277 0.98
356 4 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (355 bp):
GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTG
GGGCCAAAACCCCTTCCTAAAAAATATTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGCCTTAAAGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAAGAAGATGTACCAAAACTCACCTACC
ACCCTATCGATCCACAGCGTGAGCATCCCGTCTCTCTGACCGGCATAGTGCCCGCCCGCACGCCC
GCTCATTTCGTCGGTTGGGTTAGGTATACG
Found at i:15375908 original size:902 final size:886
Alignment explanation
Indices: 15374004--15376506 Score: 3404
Period size: 902 Copynumber: 2.8 Consensus size: 886
15373994 AGGTATACGG
* * * * *
15374004 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACATCTACCATGTTTGG
1 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * * * *
15374069 GGCCAAAACCCCTTTTGAAAAAATTTTAAAAAATCCCGAACTGCAAAACGTTTCGAAAATCGTGA
66 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGAGA
15374134 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTAAAGGCTTAAGGGACCATTGTATGAA
131 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTT-AAGGCTTAAGGGACCATTGTATGAA
* * * *
15374199 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCA
195 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCA
* * *
15374264 CCCTATCGATCCACGGCTTG-AGCATCCCGTCTCTCTGG-TCGGCGTAGTGCCCGCCCACCCG-C
260 CCCTATGGATCCACGGCTTGTAG-ATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCTCTCGCC
* * * * * * * * ** *
15374326 TCGCCTGCTTGTTTCGTCAGTTCGCTTAGGCGTATGGAGTTCATTCCCTGTCTAAGATAGGACCA
323 T-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAATCTAAGATCGGACCA
* * ** ** * *
15374391 AACCGAGGGTTGCGGCAGCAGGATCGGTAGCACAAAGAGGGGGACCCGGTCGATCCCTGGCTTGT
387 GACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGT
* * * * *
15374456 GCATCCCACCCCTCTGGC-C-GA---CTGAATGC-C----C--GACTTAGGCATACGAAGTTCAT
452 GCATCCCGCCCCTTTGGCTCTGACGCCCGTACGCTCGTTTCGTGACTTAGGCAT-C-AAGTTCAT
* * * * *
15374509 TCCTAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCACATCGAAGGTTGCGGCAG
515 TCC-AGT-CAAGCATAC-GAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGC-GTAG
* *
15374574 CACATGCTGGCCTCGAGCATGTGCTAGTGACGTATTTTTCTTCG-CTGGGGCACCATC-CTCGGA
576 CACATGCTGGGCTCGAGCATGTGCT-GTG-CGCATTTTTCTTCGTC-GGGGCACCATCGC-CGGA
* * * * * *
15374637 GCAACGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACTATCTGGGAGGTCGGGGGGGTGTG
637 GCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGAGG-CCGGGGGGTGTG
* * * *
15374702 CACACATGATGTCCGATGGGTGCTGGTACTTTACCCTTATATTGGCCCCCTATCCCTCATCAAAC
701 CGCACATGATGTACGATGGTTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15374767 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
766 CTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
15374832 AAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTTACCAAATCTTGTACACTTCA
831 AAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACCAAATCTTGTACACTTCA
* * *
15374888 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGACCAAGCCTACCAAGTTTGG
1 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
15374953 GGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGAGA
66 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGAGA
15375018 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAA
131 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-TTAAGGCTTAAGGGACCATTGTATGAA
15375083 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCA
195 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCA
* * * *
15375148 CCCTATGGATCCATGGCTTGTAGATCCTGTCTCTCTGGCTGGCGTAGTGGCCGCCCTCTTGCCTG
260 CCCTATGGATCCACGGCTTGTAGATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCTCTCGCCTG
* * * *
15375213 CCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCTTTCCCAATCTAAGATCGGATCGGAC
325 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAATCTAAGATCGGACCAGAC
* *
15375278 TGAGGGTTGTGGTAGCAGGATCGACAGCAACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGC
390 TGAGGGTTGCGGCAGCAGGATCGACAGC-ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGC
*
15375343 ATCCGGCCCCTTTGGCTGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAAAG
454 ATCCCGCCCCTTTGGCT-CTGA-CGCCCGTACGCTCGTTTC----G-TGACTTAGGCAT-C-AAG
* * *
15375408 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATTTAAAATTGGACCAGACCGAGGGTTGC
510 TTCATT-CCAGTC-AAGCATACG-AGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGC
* *
15375473 GTAGCACATGCTGGGCTCAAGCATGTGCTGCTGTCGCATTTGTT-TTCGTCAGGGCACCATCGCC
572 GTAGCACATGCTGGGCTCGAGCATGTGCTG-TG-CGCATTT-TTCTTCGTCGGGGCACCATCGCC
15375537 GGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGAGGCCGGGGGGTG
634 GGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGAGGCCGGGGGGTG
* *
15375602 TGCGCACATGATGTACGATGGTTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAA
699 TGCGCACATGATGTACGATGGTTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAA
*
15375667 ACCTCGA-AACTCACACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
764 ACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
15375731 TAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACCAAATCTTGTACACTTCA
829 TAAAGTGTCTGAAATGGAGACACTTTTTTTAAATGGTCACCAAATCTTGTACACTTCA
15375789 AGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
1 A-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
*
15375854 GGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGAG
65 GGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGAG
* *
15375919 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
130 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC-TTAAGGCTTAAGGGACCATTGTATGA
15375984 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACC
194 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACC
* *
15376049 ACCCTATGGATCCACGGCTTGTAGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCTCGCCT
259 ACCCTATGGATCCACGGCTTGTAGATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCTCTCGCCT
* * *
15376114 GCCCGTTCGTTTTATCGGTTGGCTTAGGTATACGGAGTTCTTTCCCAATCTAAGATCGGACCAGA
324 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAATCTAAGATCGGACCAGA
* * *
15376179 CTGAGGGTTGCGGCAGCAAGATCAACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGTGC
389 CTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGC
*
15376244 ATCCCGCCCCTTTGGCTATTGAACGCCCGTACGCTCGTTTCGTG-----GG-AT-AA---C-TT-
454 ATCCCGCCCCTTTGGCT-CTG-ACGCCCGTACGCTCGTTTCGTGACTTAGGCATCAAGTTCATTC
* * * *
15376297 -AGGC-A-CACA-GAGTTCATTCCCAGTGTAAAATCGGACCAGACCGAGGGTTGTGATAGCACAT
517 CAGTCAAGCATACGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCG-TAGCACAT
* *
15376358 GCTGGGCTCGGGCATGTGCTGGTGC-CATATTTTTCTTCGTCGGGGCACTATCGCCGGAGCATCA
581 GCTGGGCTCGAGCATGTGCT-GTGCGC--ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCA
* *
15376422 CCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCAGGGAGGTCGGGGGGTGTGCGCACAT
643 CCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGAGGCCGGGGGGTGTGCGCACAT
*
15376487 GATGTGCGATGGTTGCTGGT
708 GATGTACGATGGTTGCTGGT
15376507 TTGCTACCAT
Statistics
Matches: 1445, Mismatches: 136, Indels: 84
0.87 0.08 0.05
Matches are distributed among these distances:
874 1 0.00
875 41 0.03
876 142 0.10
877 4 0.00
878 1 0.00
880 3 0.00
883 2 0.00
884 357 0.25
885 52 0.04
887 3 0.00
888 2 0.00
890 2 0.00
891 2 0.00
892 5 0.00
893 1 0.00
896 2 0.00
897 2 0.00
901 183 0.13
902 467 0.32
903 101 0.07
904 70 0.05
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGAGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCAC
CCTATGGATCCACGGCTTGTAGATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCTCTCGCCTGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAATCTAAGATCGGACCAGACT
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCAT
CCCGCCCCTTTGGCTCTGACGCCCGTACGCTCGTTTCGTGACTTAGGCATCAAGTTCATTCCAGT
CAAGCATACGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCGTAGCACATGCTGG
GCTCGAGCATGTGCTGTGCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
CCTGACCGGCAGCATTGGGGTTCCGACGATCAGGGAGGCCGGGGGGTGTGCGCACATGATGTACG
ATGGTTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
AGACACTTTTTTTAAATGGTCACCAAATCTTGTACACTTCA
Found at i:15378023 original size:26 final size:26
Alignment explanation
Indices: 15377993--15378042 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15377983 GACTTAGGTG
*
15377993 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCACTCCCAGTCTAAGCA
15378019 TACGGAGTTCACTCCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
15378043 ACCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCA
Found at i:15378452 original size:896 final size:892
Alignment explanation
Indices: 15376504--15379788 Score: 4089
Period size: 903 Copynumber: 3.7 Consensus size: 892
15376494 GATGGTTGCT
* * * * *
15376504 GGTTTGCTACCA-TAAGCAATTCAAGTGTATGAAATGGGGACAGTTTTTTCAAATGGTCACAAAA
1 GGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
15376568 TCTTGTTCACTTCGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCACCAAAAGTACAAGGATCAC
65 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
15376632 GTCTACCAAGTTTGGGGCCAAATCT-CTGTCCAAAAAAATTTTTAAAAATCCCGAACCGTAAAAA
129 GTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
* * * *
15376696 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTTTTGCCATTAAACTTCACCTGAAGGCTTAA
193 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAA
* * * *** *
15376761 GGGACCATTGTATGAATTTACATGCCATAAAAATGGCAGTGGCACATAGAAATATGAAAATGTAC
258 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGC
* * *
15376826 CTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCTCGTCTTTCTGGCCGACGTAGTG
323 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * *
15376891 CCATCCCGCCTGCCCGTCCGCTCGTTTCATCGGTTGGGTTAGGCATACGGAGTTCATTCCAAGTC
388 CC--CGC-CCTGCCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * * *
15376956 TAAGATTGGACCAGACCGAGGG-TACCGATAGCAGGATTGGCAGCACGCAGAGGGGGACTCTATC
450 TAAGATTGAACCAGACCGAGGGTTA-CGGCAGCAAGATCGACAGCACGCAGAGGGGGAC-CGATC
15377020 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-AGCTGAGCGCCCGCACGCTCATTTCGTGGGT
513 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
15377084 TGACTTAGGCATACGGAGTTCATTCCCTGTCAAGCATACAAAGTTCATTCCTAGTCTAAGATTGG
577 TGACTTAGGCATACGGAGTTCATTCCCAGTCAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
* * * *
15377149 ACCGGAACGAGGGTTGTGGCAGCACATTCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
642 ACCGGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTC
* * *
15377214 GACGGGGCACCATCCCCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
705 -ACGGGGCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
15377279 GGGGGGGCCGGGGGGGTGTGCGCACAAGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
769 -GGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
15377344 CCCCCTATCCCTCATCAAACCTTGAGAACTCAGACCTCCTTAAAGAGCATTTGAGATTTTACA
831 -CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15377407 GGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
15377472 CCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACATGGATCACAT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
15377537 CTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAACA-T
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAA-AGT
* *
15377601 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACTTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAAG
** * *
15377666 GACCATTGTATGAATTTACAAGCCATAAAAATAACATTGGCATGTAGAAATATGAAGATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCT
* * * *
15377731 AAAACCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTTTGGCCGATGTAGTG-C
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * ** *
15377795 CG-CCTGCCCGTCCGCTCGTTTTGTCGGTTAGCTGAGGCATATTGAGTTCATTCCCAGTCTATGA
390 CGCCCTGCCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
15377859 TTGAACCGGACTGAGGGTTATGGTAGCAAGATC-AGCAGCATGCAGAGGGGGAGCCGGTCGATCC
455 TTGAACCAGACCGAGGGTTACGGCAGCAAGATCGA-CAGCACGCAGAGGGGGA-CCGATCGATCC
* * * * *
15377923 CTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGTACGCTCGTTTCATGGGTTGACTT
518 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
** * * *
15377988 AGGTGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGACCGGACCGG
583 AGGCATACGGAGTTCATTCCCAGTC-AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * *
15378053 ACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTGTTCACTGG
647 ACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCAC-GG
* * * *
15378118 GCCACCATCCTCGGAGCAACGCCGGAGAACCTGACCGGCGGAATTGGGGTTCCGGCGATCGGGGC
709 GGCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-
* * ** * *
15378183 GGTCGGGTGGTGTGCACACATGATGCCCGATGGTTGCTGGTACTTGGCGCTTATATTGG-CCCTA
773 GGCCGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTA
*
15378247 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACA
837 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
15378303 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
15378368 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * *
15378433 CTAAAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
* * * *
15378498 TC-AAAATCGTGAAAAATAAAAAACGAGTTGTCTTTCCATGAAACTTCA-TGTGAAGGCTTAAAG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACT-TGAAGGCTTAAAG
* * *
15378561 AACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCGTGCAGAAATATGAAAATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCT
* ** * *
15378626 AAACCCACCTAGCACCCTATCGATCCACGGCTTTTGCATCCCATCTCTCTGGCCGGCGTAGTGCC
325 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * * * *
15378691 CGCCCTCTCGCCTGCCCGTTCGTTTCGTCGAATT-GCTTAGGCATACGAAGTTCTTTCCTAGTCT
390 CG-CC-CT-GCCCGTCCGCTCGTTTCGTCG-GTTAGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** *
15378755 AAGATCTG-GCCGGACTGAGGGTTGTGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGATCG
451 AAGAT-TGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGAGGGGGA-CCGATCG
* * * * *
15378819 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACACTCGTTT--T---TTG
514 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* *
15378879 -----GG--T--TGA---C-TT---AG----GCATACAGAGTTCATTCCCAGTCTAAAATCGGAC
579 ACTTAGGCATACGGAGTTCATTCCCAGTCAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
15378924 CAGACCAAGGGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCAC
644 CGGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCA-
** * * * *
15378989 CGGGGCACCATTGTCGGAGCATTGCCGAAGAACCTGACCGACGGCATTGGCGTTCCGACGATCGG
706 CGGGGCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
15379054 GGGGCCGAGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
771 GGGGCCG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCC
* * *
15379119 CTATCCCTCATCAAACCTTGAAAACTCACACCCCCATAAAGAGCATTTGAGATTCTACA
834 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
15379178 GGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAAT
1 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15379243 CTTGTACACATCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
66 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
15379308 CTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
* * *
15379373 TCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAAG
196 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAAGG
* * *
15379438 ACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTA
261 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTA
* * * ** *
15379503 AACCCACCTACCACCCTATCGATCCACGACTTGCACATCCCGTCTCTCTGGCTGGTGTCGTGACC
326 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC
* * * * * *
15379568 GCCCACCCGCCCG-CCTGCTCATTTCGTCGGTTACCTTAGGCAGACGGAGTTCATTCCCAATCTA
390 -CGC-CCTGCCCGTCC-GCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
15379632 AGA-TCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGATAGCACGCAGCA-GGGGACCTGGTCG
452 AGATTGA-ACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAG-AGGGGGACC-GATCG
* * * * * * * *
15379695 ATCCCTGACTTGTGCATCTCACCCCTTTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
514 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTG
*
15379760 ACTTAGGCATACGGGGTTCATTCCCAGTC
579 ACTTAGGCATACGGAGTTCATTCCCAGTC
15379789 TAAGATCGGA
Statistics
Matches: 2059, Mismatches: 260, Indels: 130
0.84 0.11 0.05
Matches are distributed among these distances:
873 51 0.02
874 143 0.07
875 246 0.12
876 302 0.15
877 5 0.00
878 3 0.00
879 2 0.00
881 3 0.00
882 2 0.00
883 1 0.00
886 4 0.00
888 2 0.00
890 3 0.00
893 1 0.00
894 3 0.00
895 169 0.08
896 241 0.12
897 5 0.00
898 232 0.11
899 148 0.07
900 144 0.07
901 5 0.00
902 7 0.00
903 333 0.16
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAAGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
GCCCTGCCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
TGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGAGGGGGACCGATCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCACGGGGCACCA
TCCTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATC
AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
Found at i:15382388 original size:13 final size:13
Alignment explanation
Indices: 15382370--15382395 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15382360 CAGGGCTCAG
15382370 ACATGATGTGCGC
1 ACATGATGTGCGC
15382383 ACATGATGTGCGC
1 ACATGATGTGCGC
15382396 TGGGTGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGATGTGCGC
Found at i:15383987 original size:26 final size:26
Alignment explanation
Indices: 15383941--15383993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15383931 GTTGACTTAG
*
15383941 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
15383967 GCATACGGTGTTCATTGCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15383993 G
1 G
15383994 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15384874 original size:26 final size:26
Alignment explanation
Indices: 15384844--15384896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384834 GTTGACTTAG
*
15384844 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15384870 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15384896 G
1 G
15384897 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15385176 original size:903 final size:896
Alignment explanation
Indices: 15383075--15385766 Score: 3821
Period size: 891 Copynumber: 3.0 Consensus size: 896
15383065 GTTGACTTAG
* * * * * * **
15383075 GCATACGGAGTTCCTTCCCAGTCTAAGATGGAATCGGATCGAAGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * * *
15383140 TTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAGCATTGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-TCTCCGAGCATAGCCGGAGA
* * * * *
15383205 ACCTGATCGGCGGCATTGGCATTCTGACGATCGGGGGGGGCCGAGGGGTGTGTGCACAAGATGTG
130 ACCTGATCGGCGGCATTGGCGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
15383270 CAATCGGTGCTGGTACCTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15383335 ACCCCCATAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15383400 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
* * *
15383465 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATA
388 TGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAATA
* *
15383530 ATTTTAAAAAATCTCGAACCGCTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15383595 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
* *
15383660 TTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
15383725 CATCCCGTCTCTCTGGCCGGC--GT--CA---T---GCCCGCCCGCTCGTTTCATCGGTTGGCTT
647 CATCCCGTCTCTCTGGCCGGCGTGTGCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * *
15383780 AGGCATACGGAA-TTCATTTCCAATCTAAGATCAGACCAGACCGAGGGTTATG-GCAGCAGGATT
712 AGGCATAC-GAAGTTCATTCCCAATCTAAGATCAGACCA-AGCGAAGGTT-TGCGCAGCAGGATC
* * * *
15383843 GGCAGCACATTGAGGGGGACCCGGTCGATCCCCGGTTTGCGCATGCTACCCCTTTGGCCGGCTGA
774 GGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCAT-CTACCCCTTTGGCCGGCTGA
* * *
15383908 GCACCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
838 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15383967 GCATACGGTGTTCATTGCCAGTTTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
15384032 CTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTTTGAGCATAGCTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCCGAGCATAGCCGGAGA
*
15384097 ACCTGACCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGATCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15384162 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15384227 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15384292 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
*
15384357 GCACGCCAACAAAAATTCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAATAA
389 GCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT-CCGAAATAA
* * *
15384422 TTTTAAGAAATCTGGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15384487 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCAT
* ** * * * *
15384552 TGACACACAGAAATATGAAGATCTACCTAAAACTACCTACCACCCTATCGATCCACGACTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * *
15384617 ATCCCGTATCTCTGGCCGGCGTAGTGCCTACCCTCCCACCCACCCGCTCGTTTCCTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGT-GTGCC-ACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * *
15384682 TAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGAAGC-AAGCTTTGCTGCAGTAGGATC
711 TAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACC-AAGCGAAGGTTTGC-GCAGCAGGATC
* * * * * *
15384746 GGCAGCACGTAGAGGGGGACCC-GACCATTCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTA
774 GGCAGCACGTAGAGGGGGACCCGGTCGA-TCCCCGGCTTGTGCAT-CTACCCCTTTGGCCGGCTG
* * *
15384810 AGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAA
837 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15384870 GCATACGGAGTTCATTCCCAGTTTAAGATTGAATCGGACCGAGGGTTATGGTAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTTTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15384935 CTCAAGCATGTGCTGGAGCCGTATTTTTCTTCGTCGGGGCACCATCACCGAGCATCGCCGGAGAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGAGCATAGCCGGAGAA
* ** * * *
15385000 CTTGATCGGCGATATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATCTGT
131 CCTGATCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
15385065 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACA
15385130 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15385195 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-ACAT-GAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
*
15385258 GCACGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCC--AACTCCT-CGAAA-AAT
389 GCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTCCGAAATAAT
15385319 TTTAAAAAATCTCGAAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTAAAAAATCTCGAA-CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15385384 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTCTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCAT
*
15385449 TGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * * * *
15385514 ATCCCGTCTCTCTGG-CTGCTGTCGTGACCGCCCGCCCGTCCGCCTGCTCGTTTCGTCGGTTGCC
648 ATCCCGTCTCTCTGGCCGGC-GT-GTG-CCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * *
15385578 TTAGGCAGACGGAGTTCATTCCCAATCTAAGATCAGACC-AGACTG-AGGGTTGCGGCAGCAAGA
710 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAG-C-GAAGGTTTGC-GCAGCAGGA
** * * ** *
15385641 TCGATAGCACGCAGCGGGGGACCCGGTCGATCCTTGACTTGTGCATCTCACCCCTTTGGCC-GCT
772 TCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCT-ACCCCTTTGGCCGGCT
*
15385705 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15385766 G
1 G
15385767 ATCGGACCAG
Statistics
Matches: 1596, Mismatches: 174, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
890 1 0.00
891 470 0.29
892 133 0.08
894 2 0.00
895 2 0.00
896 84 0.05
897 309 0.19
898 5 0.00
899 7 0.00
900 1 0.00
901 70 0.04
902 65 0.04
903 446 0.28
904 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTTTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGAGCATAGCCGGAGAA
CCTGATCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGC
ACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTCCGAAATAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
CCGTCTCTCTGGCCGGCGTGTGCCACCCTCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGAAGTTCATTCCCAATCTAAGATCAGACCAAGCGAAGGTTTGCGCAGCAGGATCGGCAGCA
CGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCTACCCCTTTGGCCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15385828 original size:13 final size:13
Alignment explanation
Indices: 15385810--15385835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15385800 CAGGGCTCAG
15385810 ACATGATGTGCGC
1 ACATGATGTGCGC
15385823 ACATGATGTGCGC
1 ACATGATGTGCGC
15385836 TGGGTGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGATGTGCGC
Found at i:15386543 original size:26 final size:26
Alignment explanation
Indices: 15386506--15386558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15386496 GTTGACTTAG
15386506 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15386532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15386558 G
1 G
15386559 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15388326 original size:26 final size:26
Alignment explanation
Indices: 15388296--15388348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15388286 GTTGACTTAG
*
15388296 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15388322 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15388348 G
1 G
15388349 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15388635 original size:903 final size:898
Alignment explanation
Indices: 15385816--15391926 Score: 8204
Period size: 903 Copynumber: 6.8 Consensus size: 898
15385806 TCAGACATGA
* * * *
15385816 TGTGCGCACATGATGTGCGCTGGGTGCTGGTACTTGGCCCTTATATTGGCCTCTTATCCTTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
15385881 AAACCTTGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15385946 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
15386011 CTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
15386076 AAACTCCTACC-AAAAACATTTTAAAAAATCCCTAATTGTAAAAAGTTTCAAAAATCGA-GAAAA
261 AAACTCCTTCCGAAAAA-ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAA
* *
15386139 ATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
15386204 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAACCCACCTGCCA-CC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
15386268 TATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAATGCCAGCCCGCCTGCCTGCCC
454 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA-CCCGCCCGCCCGCCC
* *
15386333 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTGTAAGATCAGACCAGACCGA
518 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * *
15386398 GGGTTGCGGCAGCA-GATC-GCAGCA-GCAGA-GGGGACCTGGCCATCCCTGGCTTGCGCAT-CC
583 GGGTTG-TGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCATCCCCGGCTTGCGCATCCC
* * * * *
15386458 GCCCTTCTAACCGGTTGAGCACTCGTA-GCTC-GTT-GTGGGTTGACTTAGGCATACGAAGTTCA
647 GCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-AGTTCA
*
15386520 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTA
711 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * *
15386585 GCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTCTCTTCGTC-GGGAACCATCACTGGAG
776 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCGGAG
* * * * **
15386649 CATCGTCGAAGAA-CTGATCGGTGGCATTGCGGTTCCGGTGATCGGGGGGCCGGGGGG
841 CATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
*
15386706 TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATTCCCTCAT
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCAT
* * *
15386770 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAATAGC
65 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
15386835 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTT
130 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
15386900 TTTAGTTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
15386964 AAAACTCCTTCCGAAATAATTTTAAAAAATCTCAAACCGCT-AAAAGTTTCAAAAATCGTGAAAA
260 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-TAAAAAGTTTCAAAAATCATGAAAA
*
15387028 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15387093 ACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAAGAATGTGCCTAAA-CCACCTACCACC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG-ATGTGCCTAAACCCACCTACCACC
*
15387157 CTATCGATCCACGGCTTGCCGCATCCCGTCTCTCTGGCCGGC---GT--CA--TG--C-CCCGCC
453 CTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCACCCGCCCGCCCGCC
* * * *
15387212 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAATTCATTTCCAATCTAAGATCAGACCAGACCG
517 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * *
15387277 AGGGTATGGGCAGCAGGATTGGCAGCAC-CATTGA-GGGGACCCGGTCGATCCCCGGTTTGCGCA
582 AGGGT-TGTGCAGCAGGATCGGCAGCACGCA--GAGGGGGACCCGG-CCATCCCCGGCTTGCGCA
* ** * * * *
15387340 TGCTACCCCTTTGGCCGGCTG-GCACCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
643 TCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAG
* * * * * *
15387404 TTTATTCCCAGTCTAAGCATAC-GTGTTCATTGCCAGTTTAAGATCGGACCAGACCAAGGGTTAC
707 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * **
15387468 GGCAGCACATTCTAGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCATT
772 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACC
* * * * *
15387533 TGAGCATAGCTGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGG
837 GGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
*
15387596 TGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
15387661 AAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGTCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15387726 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
15387791 TTAGCTGAATTTTTTTGTGCACGCCAACAAAAATTCAAGGATCACATCTACCAAGTTTGGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
15387856 AAACTCCTCCCGAAATAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAAT
261 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
15387921 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
326 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
15387986 AAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATCTGCCTAAAACTACCTACCACCCTA
391 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
15388051 TCGATCCATGACTTGCGCATCCCGTATCTCTGGCCGGCGTAGTGCCTACCCTCCCACCCACCCGC
456 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-ACCCGCCCGCCCGCCCGC
* * * *
15388116 TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACC-GAAGCAAG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAG
* * * * * *
15388180 GTTTGCTACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCATTCCCCGGCTTGTGCATCCT
584 GGTTG-TGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCA-TCCCCGGCTTGCGCATCCC
* * * * *
15388245 GCCCCTCTAGCCGGCTAAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCG
647 GCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCA
* * * * * ** *
15388310 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATTGAATCGGACCGAGGGTTATGGTA
711 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * *
15388375 GCAGATGCTGGGCTCAAGCATGTGCTGGAGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG
776 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCGGAG
* **
15388440 CATCGCCGGAGAACTTGATCGGCGATATTGGGGTTCCGACGATCGGGGGGCCAGGGGGG
841 CATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG
* * *
15388499 TGTGCGCACATGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
15388564 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15388629 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
15388694 TTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * *
15388759 ATTCTCCTTCGGAAAAAATTTTAAAAAATCTCGAGCCGTAAAAAGTTTCAAAAATCATGAAAAAT
261 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
15388824 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAC
326 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
15388889 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
391 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * *
15388954 TCAATCCACGGCTTGCGTATCCCGTTTCTCTGGCCGACGTAGTGATCGCCCGCCCACCTGCCCGC
456 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCACCCGCCCGCCCGCCCGC
* * **
15389019 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC-GAACTAAG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAG
** * * ** *
15389083 GGTTGTGGCAATAGGATCGGTAACACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCC
584 GGTTGT-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCCC
* * * *
15389148 GCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCA
647 GCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCA
* * * * * *
15389213 TTCCTAGTCTAAGTATACGGAGTTCATTCCCAGTGTAAGATCAGACTAGACCGAGGGTTGCGACA
711 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * ** * * **
15389278 G-AGCATGCTGGGCTCGGGCATGTGCTGGTGGCGTATTTTTCTTCACCAGGAG-ACAATCGTCGG
776 GCA-CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTC-GGGGCACCATCACCGG
* * * * *
15389341 AGCATCGTCGGAGAACCTGATTGACGACATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGGTG
839 AGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC---GGG-GG-G
* *
15389406 TGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
15389471 AAACCGT-GAGAACTCACA-CCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGC
66 AAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
15389534 CATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTT
130 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
15389599 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
15389664 AAAACTCTTTCTGAAAAAATTTTTAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
260 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * *
15389728 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TTAAGGTACCATTGTATTAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15389792 ACAAGCCATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
15389857 TAACGATCCACGGCTTGCGCATCCCATCTCTCTGGACGGCGTAGTGCC-CGTCCG-CCGCCCG-C
454 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAC--CCGCCCGCCCGCC
* * *
15389919 C-CTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTC-GTCTAAGATCAGACCAGATC
517 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCAGACCAGACC
* * *
15389982 GAGGGTTGTGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCAATCCCTGGCTTGCGCAT
581 GAGGGTTGT-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCAT
* * * * *
15390047 CCCGCCCTTCTAACCGGTTGAGCACTCGTACGCTCGTTT-GTGGGTTGACTTAGGCATACGAAGT
644 CCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-AGT
15390111 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
708 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * *
15390176 GTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTCTCTTCGTCGGGGAACCATCACTG
773 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCG
* * * * **
15390241 GAGCATCGTCGAAGAA-CTGATCGGTGGCATTGCGGTTCCGGTGATCGGGGGGCCGGGGGG
838 GAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
*
15390301 TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15390366 AAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15390431 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
15390496 TTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGGCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
15390561 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
261 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
** *
15390626 AGAAAACGAGTCGTCTTGATATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTAC
326 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
15390691 AAGCCATAACAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
391 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
15390756 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCTGCCTGCCCGCCCA
456 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAC-CC-GCCCGCCCGCCCG
* * ** * ***
15390820 CACATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * *
15390885 GGTTACG-GCAGCAGAATCGGTAGCACGTAGAGGAGGACCTGGCCGATCCCCGGTTTGCGCATCC
584 GGTT--GTGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCC
* * * * * *
15390949 TGCCCCTCTGGCTGGTTGTGCACCCACACGCTCATTTTGTGGGTTGACTTAGGCATACG-G----
646 CGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCA
*
15391009 -----AG--T-----T-C--A-TTC-TT---AGTCT-A-A---GACCGGACCGAGGGTTGCGGCA
711 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * * *
15391049 GCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGCCAGGGCACCATCACCAGAG
776 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCGGAG
* * *
15391114 CATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
841 CATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* * *
15391173 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCATATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15391238 AAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * **
15391303 ATTAAAGTGTCAGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
15391368 TTAGCTGAATGTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCA
196 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
15391433 AAACTCTTTCTGAAAAAAATTTTTAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
261 AAACTCCTTCCG-AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * * * *
15391497 ATAGAAAACCAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAACGTACCATTGTGTAAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15391562 ACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
15391627 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTTCGCCCGCTCGCCCACCC
454 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCACCCGCCCGCCCGCCC
* * * *
15391692 GCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGA
518 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * * *
15391757 GGGTTGTGGCAGCAAGATTGGTAGCACGCAGAGGGGGTCCCGGCCGATCCTCGACTTTCGCATCC
583 GGGTTGT-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCC
* * *
15391822 CGCCCCTCTGGCTGGTTGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
646 CGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTC
**
15391887 ATTCCCAGTCTAAGCATATTGAGTTCATTCCCAGTCTAAG
710 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
15391927 CATACGGAGT
Statistics
Matches: 4618, Mismatches: 492, Indels: 211
0.87 0.09 0.04
Matches are distributed among these distances:
870 87 0.02
871 27 0.01
872 267 0.06
873 384 0.08
874 5 0.00
875 7 0.00
878 2 0.00
879 3 0.00
880 77 0.02
881 5 0.00
882 9 0.00
883 2 0.00
884 13 0.00
885 22 0.00
886 19 0.00
887 85 0.02
888 68 0.01
889 230 0.05
890 466 0.10
891 258 0.06
893 2 0.00
894 2 0.00
895 83 0.02
896 267 0.06
897 132 0.03
898 6 0.00
899 9 0.00
900 173 0.04
901 283 0.06
902 210 0.05
903 934 0.20
904 11 0.00
905 129 0.03
906 263 0.06
907 77 0.02
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCACCCGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGTGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCATCCCCGGCTTGCGCATCCCGCCC
CTCTAGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
TGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCACCGGAGCATCG
CCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
Found at i:15389238 original size:26 final size:26
Alignment explanation
Indices: 15389202--15389251 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15389192 GACTTAGGCT
*
15389202 TACGGAGTTCATTCCTAGTCTAAGTA
1 TACGGAGTTCATTCCCAGTCTAAGTA
*
15389228 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15389252 ATCAGACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTA
Found at i:15390129 original size:26 final size:26
Alignment explanation
Indices: 15390100--15390152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15390090 GTTGACTTAG
15390100 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15390126 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15390152 G
1 G
15390153 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15391910 original size:26 final size:26
Alignment explanation
Indices: 15391874--15391952 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15391864 GTTGACTTAG
15391874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
15391900 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15391926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15391952 G
1 G
15391953 ATCGGACAGC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15393380 original size:26 final size:26
Alignment explanation
Indices: 15393343--15393395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15393333 GTTGACTTAG
15393343 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15393369 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15393395 G
1 G
15393396 ATCGGACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15394275 original size:26 final size:26
Alignment explanation
Indices: 15394238--15394290 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394228 GTTGACTTAG
15394238 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
15394264 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCAATCCCAGTCTAA
15394290 G
1 G
15394291 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:15394726 original size:895 final size:895
Alignment explanation
Indices: 15392470--15401322 Score: 7259
Period size: 895 Copynumber: 9.8 Consensus size: 895
15392460 GTTAACTTAG
* * * *
15392470 GCATACAGAGTTCATTCCTAGTCTAAGA-C----CGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
15392530 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACTGGGGGCACCATCACCGGAGCATCGCAAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
15392595 AACCTAACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCAGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATGATGTG
* *
15392660 CGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** * *
15392725 GCCCCCTTAAAGAGCATTTGTTATTTTACAAGTGTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15392790 GGGGACACTTTTTTCAATTGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15392855 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
15392920 ATTTTTAAAAATCCAGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15392985 GCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15393050 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15393115 CATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGC
* * * * ** * * *
15393180 CTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGTAGTAGCAAGATT
707 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
15393245 GGCAGCACACAG-AGAGGGACCCGACCGATCCTCGACTTTCGCATCCCGCCCCTCTGGCTGGTTG
772 GGTAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
15393309 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * *
15393369 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CCGCACAGAGGGTTGCGGTC-GCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGG-CAGCACATGCTG
* * * *
15393432 GGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
15393497 GAACCTAACCGACGGCATTGGGGTTCTGACGATCGGGAGGGCCAGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATGATGT
* * *
15393562 ACGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCCTCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** *
15393627 CGCCCCCTTAAAGAGCATTTGTTATTTTACAGGTGTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15393692 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGCTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15393757 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCTAAAACT-CTTTCTGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
*** * * * *
15393821 TTTTTTTTAAAAATCCAGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTG
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15393886 TTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
15393951 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15394016 CGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCACACGTTTCGTCGGTTGGCTTAGGC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
15394081 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCAGCAGCAGAATCGGTAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * * * *
15394146 ACGTAGAAGGGGACCTGGCCGATCCCCGGTTTGCGCATCCCACCCCTCTGGCCAGCTGAGCACCC
778 ACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* ** *
15394211 GTACGCTCGTTTCGTTTGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15394264 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
15394329 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGACGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15394394 ACCTGACCAACGGCATTGGGGTTCCGGCGATTGGGGGGGTCGGGGGGGTGTGCGCACATGCTGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGAGGGGGTGTGCGCACATGATGTG
* *
15394459 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15394524 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
15394589 GGGGACACTTTTTTCAAATGGCCACAAAATCTCATACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
15394654 TGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGCTGCCAAAGCTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** *
15394719 ATTTTAAAAAATCCCGAAATGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
15394784 GCCATGAAACTTCACGTGAATGCTTAAAGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**
15394849 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * * *
15394914 CTTCACGTCTCTCTGGCTGACGTAGTACCCTCCCGTCCGCTTGTTTCGTCAGTT-GCATAGGCAT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
15394978 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCAC
715 ACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* *** * * ** * * *
15395043 GCAGAGGGGGACCCGGTTGATCCTCGGTTTGTTCATCCCACCCCTCTGGCCGACTGAGTGCCCGC
780 GCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
15395108 ACGCCCTTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
845 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** **
15395159 GCATACGGAGTTCATTCCCAGACTAAGATCGGA-CTAGACCGAGGGTTTTTGGCAGCACATATTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGG-TTGCGGCAGCACATGCTG
* * *** * **
15395223 GGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCAATCGCCAGAGCATCTTCGG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC-ATCGCCGGAGCATCGCCGG
* * *
15395288 AGAACCTGACCGGCAGG-ATTGGGGTTCCGACGATCGGGGGCGCTAGGGGGTGTGCGCACA-GCA
128 AGAACCTGACCGAC-GGCATTGGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATG-A
* * * * * *
15395351 TGTGCGATGGGTGCTAGTACTTGGCTCTTTTGTTAGCCCCCTATTCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
15395416 TCACACCCCCTTAAAGAGAATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15395480 ---T-AGGACACCTTTTTCAAATGGTCA-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
15395540 TTTGTGCATGCCAACAAAAATACAAGAATCATGTCTACCAAGTTTGTGGCCAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * * ** *** **** * * ** *
15395605 AAAACTTGGTAGACATGATTCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCT-AAACACT
451 AAAAATT-TTA-A-A-AAATCCCG-A--ACCG-CAAAAAG-TTTCAAAAA-TC-G-TGAAA-AAT
* * * * * * * * *
15395669 CGAAGTGTACAAGAT--TTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATAGC
503 AGAA---AACGAG-TCGTCT-TG-CCA--TG---AAACT-T-CAC-GTGAAG--GC-TT-A-AG-
* * * * ** * ** *
15395732 TACTGGCAGCAAACCTGTA-AAATCT-CAAATGCTC-T-TTAAGGGGGTGTGAGTTC-T-CA-AG
548 ----GG-A-C-CA-TTGTATGAATTTAC-AA-GC-CATAAAAATGGCAT-TG-G--CATGCAGAA
* * * * * ** * * *
15395790 GTTTGATGAGAATAGGGGGCTAACAAAGGGGCCAAGTACCAGCACCCATC-A--CACATGATGTG
598 ATATGA--AG-AT--GTGCCT---AAA---CCCACCTACCA-C-CCTATCGATCCAC-GGCT-TG
** * * **
15395852 CGCA-CACC--C-C-CTGGCCCCCCCG-A-TCGTCGGAACCC-CAATGC-CG--TCGGTCAGGTT
648 CGCATC-CCGTCTCTCTGG--CCGGCGTAGT-GCCCG--CCCGC-CCGCTCGTTTC-GTC-GGTT
** ** * * * ** * * * * * * ****
15395906 CTCCGACGATGC-TCCGGTGATGGTGCCCCGACGAAGAAAAATGTAACACCA-ACAC-ATGCCCA
704 GGCTTA-G--GCATACGGAGTTCATTCCCAGTCTAAG----AT-T-AGACCAGAC-CGAGGGTTG
* * * * * * * * **** * ** * ** ** **
15395968 AGCCTATCATGTGCTACTGTAACCCTC-GGCCTGG-TCCGATCTTATACTGGGAATGAAC-T-CC
759 CGGC-AGCA-G-GAT-CGGTAGCACGCAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCC
* * * * *** * * * * ** ** ** *
15396029 GTACGCT-T---AGACTG-G-GAATGAACTCT-GTATGCCTAAGTCAACCCATGG-A-ACGAGTG
819 G-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTA-GGCATAC-AGAG
** * * **
15396085 TGTGGGTGCTCAG-CCGA
880 T-T-CATTCCCAGTCTAA
* * * * * * *** * *** * *
15396102 CCAGAGGGGCAG--GATACGCAAGTCGGGGATCGG-TCAGGTCC--CCCTCTGCATGCTGC-CGA
1 GCATA-CGG-AGTTCATTC-CCAGTCTAAGATCGGATCA-GACCGAGGGT-TGC-GGCAGCAC-A
* * * *** * ** *** * ** * * *
15396161 TCCT--ACT-GTCGCA-ACCCTCGGT-CTG-ATCTGATCTT-AGATTGGGAATGAACTCCGTATG
59 TGCTGGGCTCG-GGCATGTGCT-GGTGCCGCAT-TTTTCTTCA-CCGGGGCACCATCGCCGGA-G
* * * * * * * *** * *
15396219 CCTAAGCCAACTGACGAAAC-GATCGAGCGG----GCGGG--CACTACG--CCGGCCAGAGAGAC
119 CAT-CG-C--CGGA-GAACCTGACCGA-CGGCATTG-GGGTTC-CGACGATCGGGGGGGCGAG-G
* * ** * *** * ***
15396275 GGG-AT--GCACAAGCCGTGGATCGATAGG-G-TGGTTGGTGG--GTT-TA---G-ATAC-AT-C
175 GGGTGTGCGCACATGATGT-G--CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *** * ** *** * * * * * *
15396326 TTCAT-ATTTCT-GTGTGC-CA-ATGCCATTTTTATG-GC--TTGTAAATTCATACA---ATGGT
237 CTCATCAAACCTCGAGAACTCACA--CCCCCTTAAAGAGCATTTG-AGATT-TTACAGGTTTGCT
* * * * ** * * **
15396381 ACC-TTAAGCC-TTCACGTGAAGTTTCATGTCAA-GACGACTCGTTTTTT--ATTTTTCACGATT
298 GCCAGT-AGCCATT-A----AAGTGTC-TG-AAATGGGGACAC-TTTTTTCAAATGGTCAC-A--
* * ** ** * * *
15396441 TTTGAAA-CTTTTTGCGGTTCTG-GATTTTTA--AAAATTTTTTCAGAAAG-AGTTTTGGCC-CC
351 ----AAATC-TTGTACACTTC-GAG-TTTTTAGCTGAATTTTTT-TG--TGCA----T-GCCAAC
** * * ** ** * * *
15396500 AAACTTGGTAGACGTGATC-C-T-T-GTATTTTTGTTGG-C---A-TGC--AC-AAAAAATTCAG
401 AAA---AATACAAG-GATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTTCGAAAAAATT---
* ** * ** * * * *
15396553 CTAAAAAAT--CGAAGTG-AACAAGATTT------T-GTGACCATTTGAAAA-AAGT-GTC--CC
458 TTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * ** * * * * *
15396604 CATTTGAGA---CACTTTAATGGC-TACTAGCAACAAACCTGTA-AAATCT-CAAATGCTC-T-T
522 CA--TGAAACTTCACGTGAA-GGCTTA--AGGGAC-CA-TTGTATGAATTTAC-AA-GC-CATAA
* * ** *** * * * **
15396661 TAAGGGGGTGTGAGTTC-T-CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
577 AAATGGCAT-TG-G--CATGC-AGAAAT-ATGA-AGAT---GTGCC--TA-AA--CCCACCTACC
* * ** * ** *
15396724 AGCACCCATC-A-CACATCATG-TGTGAACA-CCC--C-C-CCGGCCCCCCCG-A-T-CACCGAA
627 A-C-CCTATCGATC-CA-C-GGCT-TGCGCATCCCGTCTCTCTGG--CCGGCGTAGTGC-CCG-C
* ** * ** ** * * * ** * *
15396778 AC-CCCAAT-G--CCACCGGTTAGGTTCTCCGGCGATGCTCCGGCGATGGTTCCCCGAT-GAAGA
682 CCGCCCGCTCGTTTCGTCGGTT-GG--CTTAGGC-A---TACGGAGTTCATTCCCAG-TCTAAG-
* * * * * * ***
15396838 AAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTTCGAT
738 ---AT-T---A--GAC-CA-GACCGAG----G-GT-TGCGGCAG-CAGGATCGGT--AG--C-A-
** ** * *** * * * *
15396903 CTTAGACTGGG---TGGTTGATCCCCGGCTTGCACTTCCCGCCCCTCTGGTCGGCTGAGCGCCTG
779 CGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
15396965 CACGCTCATTCCGTGGGTTGACTTAGGCATA-TGAAGTTCATTCCCAGTCTAA
844 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* *
15397017 GCATACAGAGTTCATTCCC-GATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGC
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
15397081 GTTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
15397146 AACATGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGTGTGCGCACATGAT-TA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATGATGTG
15397210 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15397275 ACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15397340 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15397405 TGCATACCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
15397470 ATTTTAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15397534 GCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15397599 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15397664 CATCCTGTCTCTCTAGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGACTTAGGCGT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
15397729 ACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGCAGGACCGGCAGCAC
715 ACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * * * *
15397794 ACAG-AGAGGGACCCGACCAATCCCCGGCTTGAGCATCCCGCTCCTCTGGTCGGCTGAGCGCCCG
780 GCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
15397858 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAA
844 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15397910 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAAT-GGACTGAGGGTTGGGGCAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-ATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
15397974 GCTCGGGCATGTGCTGGTGGCACATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* **
15398039 AACCTGACCGATGGCATTGGGGTTCCGGTGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGAGGGGGTGTGCGCACATGATGT
15398103 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15398168 CACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15398233 TGGGGACACTTTTTTCAAATGGTAACAAAAT-TTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15398297 GTGCATTCCAACAAAAATAAAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* *
15398362 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15398427 TGCCATGAAACTTCAAGTGAAGGCTTAAGGAACCAATGTATGGATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15398492 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15398557 GCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
15398622 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCA
714 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
* * * * *
15398687 CACA-AAGGGGGACCCGACCGATACCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTAAGCGCTC
779 CGCAGAA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
15398751 GCACGCTGGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15398804 GCATA-GGAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
15398868 CTCGGGCATGTGCTGGTGTCGCATTTTTC-TCTGTCGGGGCACAATCGCCGGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
15398932 GACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCAGGGGGGGTGTGCGCACATGTTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-GAGGGGGTGTGCGCACATGATG
* *
15398997 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
15399062 GCACCCCCTTAAAGAGTATTTGAGATTTTACATGTTTGCTGCCAATAGCAATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15399127 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15399192 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCATTCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
** *
15399257 AAATTTTAAAAAATCCCGAACC-CAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
15399321 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAGGCAAAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15399386 CATTGGCATGCAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
15399451 CGCATCCCGTCTCTCTGGCCGGCGTAATGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGT-A-G-T-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * *
15399516 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGCAGCAGGATCGA
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
15399581 TAGCACGCAGAGGGGGACCCAACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTAAGC
774 TAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15399646 GCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * ** *
15399703 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15399768 CTCAGGCATGTGCTGGTGCCACATTTTTGTTCGCTGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * ** *
15399833 ACCTGACCGATGGCATTTGGGTTCTGACGATCGGGGAGGTTGAGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGGCGAGGGGGTGTGCGCACATGATGTG
* * * * *
15399898 CGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCTTATCCCTCATTAAACCTTGACAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15399963 ACCCCCTGAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
15400028 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAAAGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15400093 TGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGCGACCAAAAC-CCCTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAA
* * * *
15400157 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15400222 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
15400287 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15400352 GCATCCCATCTCCCTGGCCGGCGTAGTGCCCGCCTGCCGGCCTGCCTGCCTGCCCGCTCGTTCAT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-G-C--CC-G-CT---CG-T--TTCGT
* * * *
15400417 CGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTGTGGCA
699 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCA
* * * * * * *
15400482 GTAGGATCGGCAGAATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGG
764 GCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
15400547 CCGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCT
829 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
15400612 AA
894 AA
* * * * ** *
15400614 GCATACGGAGTTCATTCCTAG-GTAAGATCGGACCAGACCAAATGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15400678 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGCACAATCGTCGGAGCATCAG-CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-GCCGGAG
* * * * * *
15400742 AACCTGACCGACGGCATTAGGCTTTCGACGATCGGGGGGGCCG-GGGGCGTTTGCGAACATGATA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGAGGGG-GTGTGCGCACATGATG
* *
15400806 TGCGATTGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15400871 ACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
15400936 ATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15401001 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTATCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
** *
15401066 AAATTTTAAAAAATCCCGAACC-CAAAAAGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
15401130 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACAATTGTTTGAATTTACAAGCCACAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15401195 CATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15401260 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTTTGTTTCGTCAGTTGGCTTAG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
15401323 CCATTAAAGT
Statistics
Matches: 6450, Mismatches: 1106, Indels: 801
0.77 0.13 0.10
Matches are distributed among these distances:
890 110 0.02
891 24 0.00
892 10 0.00
893 548 0.08
894 597 0.09
895 935 0.14
896 797 0.12
897 71 0.01
898 12 0.00
899 520 0.08
900 326 0.05
901 11 0.00
902 14 0.00
903 559 0.09
904 66 0.01
905 15 0.00
906 9 0.00
907 1 0.00
908 7 0.00
909 207 0.03
910 392 0.06
911 222 0.03
912 24 0.00
913 10 0.00
914 43 0.01
915 61 0.01
916 53 0.01
917 52 0.01
918 8 0.00
919 28 0.00
920 30 0.00
921 18 0.00
922 30 0.00
923 20 0.00
924 6 0.00
925 10 0.00
926 26 0.00
927 43 0.01
928 51 0.01
929 29 0.00
930 31 0.00
931 12 0.00
932 23 0.00
933 20 0.00
934 7 0.00
935 2 0.00
936 12 0.00
937 15 0.00
938 27 0.00
939 44 0.01
940 52 0.01
941 47 0.01
942 26 0.00
943 20 0.00
944 35 0.01
945 20 0.00
946 13 0.00
947 12 0.00
948 12 0.00
949 18 0.00
950 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
CAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15397914 original size:26 final size:26
Alignment explanation
Indices: 15397884--15397936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15397874 GTTGACTTAG
15397884 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
15397910 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
15397936 G
1 G
15397937 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:15399670 original size:899 final size:894
Alignment explanation
Indices: 15396919--15401322 Score: 6285
Period size: 894 Copynumber: 4.9 Consensus size: 894
15396909 CTGGGTGGTT
* * * * * * *
15396919 GATCCCCGGCTTGCACTTCCCGCCCCTCTGGTCGGCTGAGCGCCTGCACGCTCATTCCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
15396984 GACTTAGGCATA-TGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC-GATCTAAGATC
66 GACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATC
* * *
15397047 GGATCAGACCGAGGGTTGCGGCAGCACATGCTGCGTTCGGGCATGTGCTGGTGCCGTATTTTTCT
129 GGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
15397112 TCACCGGGGCACCATCGTCGGAGCACCGTCAGAGAACATGACCGACGGCATTGGGGTTCCGACGA
194 TCGCCGGGGCACAATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
15397177 TC-GGGGGGCCGAGGGGGTGTGCGCACATGAT-TACGATGGGTGCTGGTACTTGGCCCTTATATT
259 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
15397240 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTTGAGATTTTACA
324 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
15397305 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
389 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
15397370 CTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATACCAACAAAAATACAAGGATCACGT
454 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
* * **
15397435 CTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACGTAAAAAGTTT
519 CTACCAAGTTTGGGGCCAAAAATCCTT-CAAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTT
* *
15397500 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGA
583 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
15397565 CCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
648 CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
15397630 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCAGCGTAGTGCCCG
713 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * **
15397695 CCCGCCCGCTCGTTTCGTCGATTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATTGGACC
778 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
15397760 GGACCAAGGGTTGCGGTAGCAGGACCGGCAGCACACAGAGAGGGACCCGACC
843 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACC
* * * * * * *
15397812 AATCCCCGGCTTGAGCATCCCGCTCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
15397877 GACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
15397942 AAT-GGACTGAGGGTTGGGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGGCACATTTTTCTT
131 -ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * **
15398006 CGTCGGGGCACTATCGTCGGAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTTCCGGTGAT
195 CGCCGGGGCACAATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
15398071 CGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15398135 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAG
325 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
15398200 GTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAAT-
390 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
15398264 TTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATAAAAGGATCACGTC
455 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
* * *
15398329 TACCAATTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
520 TACCAAGTTTGGGGCCAAAAATCCTT-CAAAAAAATTTTAAAAAATCCCGAACC-CAAAAAGTTT
* * *
15398394 CAAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGAA
583 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15398459 CCAA-TGTATGGATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
648 -CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
15398523 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCT
712 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* *
15398588 GCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
777 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
15398653 CGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACACAAAGGGGGACCCGACC
842 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACC
* * * *
15398706 GATACCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTAAGCGCTCGCACGCTGGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
*
15398771 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-GGAGCTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
15398835 ATCAGACCGAGGGTTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGTCGCATTTTTC-TC
131 ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
15398899 TGTCGGGGCACAATCGCCGGAGCATCGCCAGAGGACCTGACCGGCGGCATTGGGGTTCCGACGAT
196 -GCCGGGGCACAATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * *
15398964 TGGGGGGGCCAGGGGGGGTGTGCGCACATGTTGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
260 CGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15399029 GGGCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGTATTTGAGATTTTACA
324 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
15399094 TGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAAT
389 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
15399159 CTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
454 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
15399224 CTACCAAGTTTGGGGCCAAAAATCCATTCAAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTT
519 CTACCAAGTTTGGGGCCAAAAATCC-TTCAAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTT
** *
15399289 TGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
583 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
15399354 CAATTGCATGAATTTACAAGGCAAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
648 CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
15399419 CCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCTCG
713 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G-T-G
*
15399484 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
774 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * ** * *
15399549 GACCAGATTGAGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCAACC
839 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACC
* * *
15399605 GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGTCTAAGCGCCCGCACGCTCGTTTCTTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
15399670 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * ** * * * *
15399735 ACCGGATTGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTGTTC
131 ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * *
15399800 GCTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGGCATTTGGGTTCTGACGATC
196 GCCGGGGCACAATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* ** * * *
15399865 GGGGAGGTTGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGG
261 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * * *
15399930 CCCCTTATCCCTCATTAAACCTTGACAACTCACACCCCCTGAAAGAGTATTTGAGATTTTACAGG
326 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
15399995 TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
391 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** *
15400060 TGTACACTTCGAGATTTTAGCTGAAAGTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCT
456 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* * ** * *
15400125 ACCAAGTTTGCGACCAAAACCCCTTCGAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
521 ACCAAGTTTGGGGCCAAAAATCCTTC-AAAAAAATTTTAAAAAATCCCGAACC-CAAAAAGTTTC
* *
15400190 AAAAATTGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
584 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * **
15400255 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAA
649 AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
15400320 CCCACCTGCCACCCTATTGATCCACGGCTTGCGCATCCCATCTCCCTGGCCGGCGTAGTGCCCGC
714 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-
* *
15400385 CTGCCGGCCTGCCTGCCTGCCCGCTCGTTCATCGGTTCGCTTAGGCATACGGAGTTCATTCCCAG
778 C--CC-G-C--CC-G-CT---CG-T--TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * ***
15400450 TCTAAGATCAGACCAGACCGAGGGCTGTGGCAGTAGGATCGGCAGAATGTAGAGGGGGACCCGAC
829 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGAC
15400515 C
894 C
* *
15400516 GATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
15400581 GACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG-GTAAGATCGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * ** * *
15400645 ACCAGACCAAATGTTGCGACAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
15400710 GCCTGGGCACAATCGTCGGAGCATCAG-CGGAGAACCTGACCGACGGCATTAGGCTTTCGACGAT
196 GCCGGGGCACAATCGTCGGAGCATC-GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * * * *
15400774 CGGGGGGGCCGGGGGCGTTTGCGAACATGATATGCGATTGGTGCTGGTACTTGGCCCTTATAGTG
260 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15400839 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAG
325 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
15400904 GTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATCGGGACACTTTTTTCAAATGGTCACAAAATC
390 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15400969 TTGTACACTTTGATTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
455 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
* * *
15401034 TACCAAGTTTGGGGCCAAAACTCCTATCCAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTT
520 TACCAAGTTTGGGGCCAAAAATCCT-TCAAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTC
* * *
15401099 GAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAC
584 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
15401164 AATTGTTTGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAA
649 AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
15401229 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGC
714 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
15401294 CCGCCCGTTTGTTTCGTCAGTTGGCTTAG
779 CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
15401323 CCATTAAAGT
Statistics
Matches: 3134, Mismatches: 338, Indels: 77
0.88 0.10 0.02
Matches are distributed among these distances:
892 4 0.00
893 491 0.16
894 564 0.18
895 352 0.11
896 114 0.04
897 6 0.00
898 5 0.00
899 479 0.15
900 317 0.10
901 4 0.00
902 2 0.00
903 2 0.00
904 2 0.00
905 3 0.00
906 2 0.00
908 3 0.00
909 188 0.06
910 394 0.13
911 202 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GCCGGGGCACAATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
ACCAAGTTTGGGGCCAAAAATCCTTCAAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACC
Found at i:15399714 original size:26 final size:26
Alignment explanation
Indices: 15399677--15399729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15399667 GTTGACTTAG
*
15399677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15399703 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15399729 G
1 G
15399730 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15401666 original size:404 final size:404
Alignment explanation
Indices: 15400916--15401726 Score: 1318
Period size: 404 Copynumber: 2.0 Consensus size: 404
15400906 TTGCTGCCAG
* **
15400916 TAGCCATTAAAGTGTCTTAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
1 TAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * *
15400981 ATTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
66 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* *
15401046 GGCCAAAACTCCTATCCAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTTGAAAATCGTTAA
131 GGCCAAAACTCCTATCCAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTCGAAAATCGTGAA
* **
15401111 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACAATTGTTTGAAT
196 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTAAGAAT
*
15401176 TTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCAC
261 TTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
* * ** * *
15401241 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTTTGT
326 CCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGGTCGT
15401306 TTCGTCAGTTGGCT
391 TTCGTCAGTTGGCT
* *
15401320 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCA
1 TAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
15401385 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
66 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* * ** * *
15401450 GGCCAAAGCTCCT-TCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAGTTTCGAAAGTTGTGA
131 GGCCAAAACTCCTATCC-AAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTCGAAAATCGTGA
*
15401514 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAA
195 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTAAGAA
* * *
15401579 TTTGCAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
260 TTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCA
15401644 CCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGGTCG
325 CCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGGTCG
**
15401709 TTTCGTGGGTTGGCT
390 TTTCGTCAGTTGGCT
15401724 TAG
1 TAG
15401727 GCATACGAAG
Statistics
Matches: 374, Mismatches: 32, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
403 3 0.01
404 371 0.99
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (404 bp):
TAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
AGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
GGCCAAAACTCCTATCCAAAAAATTTTAAAAAATCCCGAACCCAAAAAGTTTCGAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTAAGAAT
TTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
CCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGGTCGT
TTCGTCAGTTGGCT
Found at i:15404372 original size:880 final size:878
Alignment explanation
Indices: 15402551--15404418 Score: 3505
Period size: 880 Copynumber: 2.1 Consensus size: 878
15402541 TATCGATCTA
* * *
15402551 CGGCTTGCGCATCCCATCTCTCTGGCCGGCGTA--G--TGCCCGCCTGCCCG-C-CCACTCGTTT
1 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCGCCGCTCGTTT
*
15402610 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATCGGACCGAGGGTTGT
66 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG-ATCAGACCGAGGGTTGT
15402675 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGTC
130 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGTC
*
15402740 GAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTG
195 GAAGCACCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTG
15402805 TGCGCACATGATGTGCAATGGGTTCTGGTACTTTGCCCTTTTATTGGCCCCTTATCCCTCATCAA
260 TGCGCACATGATGTGCAATGGGTTCTGGTACTTTGCCCTTTTATTGGCCCCTTATCCCTCATCAA
15402870 ACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
325 ACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
15402935 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
390 TAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
15403000 AGCTGAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCCAGTCTACCATGTTTGGGGCCAAA
455 AACTGAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCCAGTCTACCATGTTTGGGGCCAAA
15403065 ACACCATTGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAATTAG
520 ACACCATTGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAATTAG
*
15403130 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTCCAAG
585 AAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTCCAAG
15403195 CCATAAAAATGGCATCGGCATGTAGAAATATGAAGATGTGGCTAAACTCACCTACCACCCTATCG
650 CCATAAAAATGGCATCGGCATGTAGAAATATGAAGATGTGGCTAAACTCACCTACCACCCTATCG
15403260 ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCACGCCCGCTCGTTTCGTCGGTTG
715 ATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCACGCCCGCTCGTTTCGTCGGTTG
*
15403325 GCTTAGGTATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCAAGGGTTATGGTAGTAGGA
780 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCAAGGGTTATGGTAGTAGGA
15403390 TCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
845 TCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
15403424 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCCCGCTCGT
1 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG-CCG-CCGCTCGT
15403489 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
64 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
15403554 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGT
129 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGT
15403619 CGAAGCACCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGT
194 CGAAGCACCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGT
15403684 GTGCGCACATGATGTGCAATGGGTTCTGGTACTTTGCCCTTTTATTGGCCCCTTATCCCTCATCA
259 GTGCGCACATGATGTGCAATGGGTTCTGGTACTTTGCCCTTTTATTGGCCCCTTATCCCTCATCA
15403749 AACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
324 AACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
15403814 TTAAAGTGTCTGAAATGGGAACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
389 TTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
15403879 TAACTTAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCCAGTCTACCATGTTTGGGGCCAA
454 TAACTGAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCCAGTCTACCATGTTTGGGGCCAA
15403944 AACACCATTGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAATTA
519 AACACCATTGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAATTA
15404009 GAAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTCCAA
584 GAAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTCCAA
15404074 GCCATAAAAATGGCATCGGCATGTAGAAATATGAAGATGTGGCTAAACTCACCTACCACCCTATC
649 GCCATAAAAATGGCATCGGCATGTAGAAATATGAAGATGTGGCTAAACTCACCTACCACCCTATC
15404139 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCACGCCCGCTCGTTTCGTCGGTT
714 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCACGCCCGCTCGTTTCGTCGGTT
* *
15404204 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCGAGGGTTGTGGTAGTAGG
779 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCAAGGGTTATGGTAGTAGG
*
15404269 ATTGGTAGCACGTAGAGGGGGACCCGACCGATCCC
844 ATCGGTAGCACGTAGAGGGGGACCCGACCGATCCC
*
15404304 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGTCCGTCCGCCCGT
1 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCG-CCG-CCGCTCGT
*
15404369 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
64 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
15404419 GCGGACCAAG
Statistics
Matches: 969, Mismatches: 18, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
873 32 0.03
875 1 0.00
877 13 0.01
879 1 0.00
880 866 0.89
881 56 0.06
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (878 bp):
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCGCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGTCG
AAGCACCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGGGTGT
GCGCACATGATGTGCAATGGGTTCTGGTACTTTGCCCTTTTATTGGCCCCTTATCCCTCATCAAA
CCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
ACTGAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCCAGTCTACCATGTTTGGGGCCAAAA
CACCATTGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAATTAGA
AAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTCCAAGC
CATAAAAATGGCATCGGCATGTAGAAATATGAAGATGTGGCTAAACTCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCACGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCAAGGGTTATGGTAGTAGGAT
CGGTAGCACGTAGAGGGGGACCCGACCGATCCC
Found at i:15404680 original size:11 final size:11
Alignment explanation
Indices: 15404666--15404709 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
15404656 ATCGGGGCAC
15404666 CATCGCCGGAG
1 CATCGCCGGAG
15404677 CATCGCCGGAG
1 CATCGCCGGAG
*
15404688 CATCACCGGAG
1 CATCGCCGGAG
*
15404699 TATCGCCGGAG
1 CATCGCCGGAG
15404710 AACCTGACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.34, G:0.34, T:0.11
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:15405487 original size:26 final size:26
Alignment explanation
Indices: 15405451--15405505 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
15405441 TGGGTCGACT
*
15405451 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15405477 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15405503 TAA
1 TAA
15405506 CATCGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15406086 original size:890 final size:874
Alignment explanation
Indices: 15404297--15407248 Score: 3147
Period size: 890 Copynumber: 3.3 Consensus size: 874
15404287 GGGACCCGAC
*
15404297 CGATCCCCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGTCCGTC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TG--C-CCC-CCC--CCG-C
* * * *
15404362 CGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAGCGGACCA
55 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCA
* * ** * *
15404427 A--GTT-T--T-GCA-G--C---AGCATGCAGACAGGGACCCGGCCGATCCCCGACTTGCGCATC
120 AGGGTTGTGGTAGAAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATC
* * * * *
15404480 CCGCCCCCCTGGCCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTT
185 CCGCCCCTCTGGCCGGCAGAGC-C-CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* ** * * * * * * * *
15404545 CATTCCGAGTCTAAGCGCACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
248 CATTCCTAGTCTAAGCATACAGAGCTCATTCCCAG-CTAACATCGGACCGAACCAAAGGTTACGA
* * ** *
15404610 CAGCACATGCTGGGCTCA-AGCATCTATTGGTGCTGCATATTTCTTCATCGGGGCACCATCGCCG
312 CAGCACATGCCGGGCT-AGGGCAT-TGCTGGTGCCGC--ATTT-TTC-T----------TCGCCG
* * * *
15404674 GAGCATCGCCGGAGCATCACCGGAGTATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
361 GGGCA----C--A--ATCGCCGAAGCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTCCGAC
* * *
15404739 GATCG-GGGGGCGAGGGG-GGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
417 GATCGAGGGGGCGGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
*
15404802 ATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTT
482 ATTGGCCCCCTAT-CC-C-T-----C-----AACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
15404867 ACTGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAA
534 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTCAAATGGTCACAAA
* **
15404932 ATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTGTGCAT-CCAACAAAAATACAAGGATCATG
599 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
* * * * *
15404996 TCTGCCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAATCCCAAACCGCAAAAAGTT
664 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGAACCG-TAAAAGTT
* *
15405061 TCAGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTGACGTGAAGGCTTAAGGG
728 TC-GAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** * * *
15405126 ACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCACAAAAAAATTTGAAGATGTGCCAA
791 ACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
15405191 AACCCACCTACCACCCTAT
856 AACCCACCTACCACCCTAT
* * * *
15405210 CGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTTGTTCCCGCCCACCCACCCGTCCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-T---GCCC-CCC-CCCG-CCGCT
* ** * * * * *
15405275 CGTTTTGTCAGTAAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAACAGATCGAGGG
59 CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGG
* * * * *
15405340 TTGTGGTAGAAGGATTGGTAGCACGCAGAGTGGGACCCGACTGATCCTCGACTTGCACATCTCGC
124 TTGTGGTAGAAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGC
* *
15405405 CCCTCTGGCCGGCAGAGCATCCGCACGCTTGTTTCGTGGGTCGACTTAAGCATACGGAGTTCATT
189 CCCTCTGGCCGGCAGAGC--CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
15405470 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATC-GATCGAACCGAGGGTTACGACAGC
252 CCTAGTCTAAGCATACAGAGCTCATTCCCAG-CTAACATCGGACCGAACCAAAGGTTACGACAGC
* * * *
15405534 ACATGCTGGGCTCA-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGC
316 ACATGCCGGGCT-AGGGCAT-TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACAATCGCCGAAGC
* *
15405598 ATCGCTGGAGAACCTGACCGACGACATTGTGGTTCCGACGATCGAGGGGGTCGGGGGGTGGTGTG
379 ATCGCCGGAGAACCTGACCGACGGCATTG-GGTTCCGACGATCGAGGGGG-CGGGGGGTGGTGTG
* *
15405663 GGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTC-A-TCAC
442 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACTCAC
* *
15405726 ACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
507 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15405791 GGGGACATTTTTTTCAAAATGGTCACAAAATCTTGTACCCTTCAAGTTTTTAGCTGAATGTTTTT
572 GGGGACA-TTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
*
15405856 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAGCTCCTTCCGAAAA
634 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15405921 AATTTTTAAAATTCCGAACCGTAAAAGTTTCGAAAGTTTGTGAAAATAGAAAACGAGTCGTCTTG
699 AATTTTAAAAATCCCGAACCGTAAAAGTTTCGAAA--TCGTGAAAATAGAAAACGAGTCGTCTTG
* *
15405986 CCATGAAAACTTCACGTAAAGGCTTAAGGGACCATTGTAAGAATTTCCAAGCCATAAAAATGGCA
762 CCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCA
* *
15406051 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT-GC-GCCTAT
826 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
15406098 CGATCCACGACTTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGC-CCGGTCG-TTTG
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCCCGCCGCTCGTTTTG
* * ** *
15406161 TCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAACATCGGACCAGACCAAGGGTTACGGC
66 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGGT
* * * * * *
15406226 AGCAA-GATCGGCAGAATGCAGTGGGGGACCCCG-CCGATCCCCGGCTTGCACATCCCACCCCTC
131 AG-AAGGATCGGTAGCACGCAGAGGGGGA-CCCGACCGATCCCCGACTTGCACATCCCGCCCCTC
* ** * *
15406289 TGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCT-
194 TGGCCGGC--AGAGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTA
* * ** **
15406353 GTCTAAGCATACAGAGCTCATTCCCAGGTAAGATCGGACCGAACCAAATTTTGTGACAGCACATG
256 GTCTAAGCATACAGAGCTCATTCCCAGCTAACATCGGACCGAACCAAAGGTTACGACAGCACATG
* * * *
15406418 CCGGGCTAGGGCATTGCTGGTGCCGCATTTTTCTTCGCCTGGGCACAATCGCTGGAGCATCACCG
321 CCGGGCTAGGGCATTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCGCCG
* * * *
15406483 GAGAACCTGACCGACGGTATTAGGGTTTCGACGATC-AGGGGGGCCAGGGGGT--T-TGCGAACA
386 GAGAACCTGACCGACGGCATT-GGGTTCCGACGATCGA-GGGGG-CGGGGGGTGGTGTGCGCACA
15406544 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAG
448 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG--CCC---CC-T-ATC---CCTC---
*
15406609 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGT
500 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
15406674 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
565 CTGAAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * * *
15406739 TTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATC-CAGTCTACCATGTTTGGGGCCAAAACACCG
628 -TTTTTTGTGCATGCCAACAAAAATACAAGGATCACA-TCTACCAAGTTTGGGGCCAAAACTCC-
* * * *
15406803 TT-GGAAAAAATTTTAGAAAATCCCGAACCATAAAAAGTTTTCAAAATCGTGAAAATTAGAAAAT
690 TTCCGAAAAAATTTTA-AAAATCCCGAACCGT-AAAAG-TTTCGAAATCGTGAAAA-TAGAAAAC
*
15406867 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATGAATTTCCAAGCCAT
751 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCAT
* *
15406931 AAAAATGGCATCGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTAT
816 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
15406990 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTG----CCCGC-CCGCTCGTTTCG
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCCCGCCGCTCGTTTTG
* *
15407050 TCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGGCCAGACCAAGGGTTGTGGT
66 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGGT
* * * * * *
15407115 CGTAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCTCTCTG
131 AGAAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTG
* * * * *
15407180 GCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
196 GCCGGC--AGAGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
15407245 TAAG
259 TAAG
15407249 ATTGACCGGA
Statistics
Matches: 1746, Mismatches: 226, Indels: 158
0.82 0.11 0.07
Matches are distributed among these distances:
875 44 0.03
876 1 0.00
877 4 0.00
878 93 0.05
879 206 0.12
880 17 0.01
881 5 0.00
882 5 0.00
883 2 0.00
884 4 0.00
885 4 0.00
886 71 0.04
887 8 0.00
888 101 0.06
889 253 0.14
890 378 0.22
891 44 0.03
892 72 0.04
893 8 0.00
897 1 0.00
898 49 0.03
899 6 0.00
900 8 0.00
901 55 0.03
902 1 0.00
906 9 0.01
909 60 0.03
910 5 0.00
911 7 0.00
912 1 0.00
913 36 0.02
914 1 0.00
915 2 0.00
916 2 0.00
917 3 0.00
918 4 0.00
920 46 0.03
921 129 0.07
922 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (874 bp):
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCCCGCCGCTCGTTTTG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGTGGT
AGAAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTG
GCCGGCAGAGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
AGCATACAGAGCTCATTCCCAGCTAACATCGGACCGAACCAAAGGTTACGACAGCACATGCCGGG
CTAGGGCATTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGTTCCGACGATCGAGGGGGCGGGGGGTGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCCCGA
ACCGTAAAAGTTTCGAAATCGTGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTAT
Found at i:15407391 original size:145 final size:147
Alignment explanation
Indices: 15407127--15407406 Score: 395
Period size: 145 Copynumber: 1.9 Consensus size: 147
15407117 TAGGATCGGT
** * * * *
15407127 AGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
1 AGCACGTAGACAGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCCCCCTGGCCGACGTAGCG
* * * *
15407192 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACC
66 CCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
15407256 GGACCAAGTTTTACAGC
131 GGACCAAGTTTTACAGC
* * *
15407273 AGCACGTAGACAGGGACCCGGCCGATCCTCGGCTTGCGCATCCCG-CCCCCTGGCCGAC-TGAGC
1 AGCACGTAGACAGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCCCCCTGGCCGACGT-AGC
* *
15407336 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGAC
65 GCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
15407401 CGGACC
130 CGGACC
15407407 GAGGGTTGCG
Statistics
Matches: 117, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
144 1 0.01
145 67 0.57
146 49 0.42
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (147 bp):
AGCACGTAGACAGGGACCCGACCGATCCCCGACTTGCGCATCCCGTCCCCCTGGCCGACGTAGCG
CCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCAAGTTTTACAGC
Found at i:15408283 original size:26 final size:26
Alignment explanation
Indices: 15408253--15408305 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15408243 ATTGACTTAG
15408253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15408279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15408305 G
1 G
15408306 ATTGGAGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15408915 original size:26 final size:26
Alignment explanation
Indices: 15408879--15408940 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
15408869 TGGGTCGACT
*
15408879 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15408905 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15408931 TAA-CAT-CGGA
1 TAAGCATACGGA
15408941 TCGAACCGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 4 0.11
25 3 0.09
26 28 0.80
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15409787 original size:26 final size:26
Alignment explanation
Indices: 15409751--15409803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15409741 GTTAACTTAG
*
15409751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15409777 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15409803 G
1 G
15409804 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15410310 original size:885 final size:865
Alignment explanation
Indices: 15408400--15410508 Score: 2821
Period size: 875 Copynumber: 2.4 Consensus size: 865
15408390 GTCAGAGCGT
* * * * *
15408400 CCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAA-ATCCTTCTGAAAAAATTTT
1 CCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACAT-TTTCCGAAAAAATTTT
15408464 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCAT
65 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCAT
*
15408529 GAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
130 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC
** *
15408594 ACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT-C
194 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * **
15408658 TCGTCTCTCTGGCCGGTGTTGTTCCCGCCCACCCACCCGTCCGCTCGTTTTGTCGGTAAGCTTAG
259 T-GTCTCTCTGGCC-GTGTAG-T---G-CC-CCTACCCGTCCGCTCGTTTTGTCAGTTGGCTTAG
** * * ** **
15408723 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAACAGATCGAGGGTTGTGGTAGAAGGATCGGTA
316 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGTAGAAGGATCGACA
* * * *
15408788 GCACGCAGAGGGGGACCCGACTGATCCTCGACTTGCACATCTCGCCCCTCTGGCCGGCAGAGCAC
381 CCACGCAGA-GGGGACCCGACCGATCCCCGACTTGCACATCTCGCCCCTCTGGCCGGCAGAACAC
* * * *
15408853 CCGCACGCTTGTTTCGTGGGTCGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
445 CCACACGCTCGTTTCGTGGGTCAACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
15408918 TTCATTCCCAGTCTAACATCGGATCGAACCGAGGGTTACGACAGCACATGCTGGTGTCGCATTTT
510 TTCATTCCCAGCCTAACATCGGACCGAACCGAGGGTTACGACAGCACATGCTGGTGTCGCATTGT
* ** * * * *
15408983 TCTTCGTCGGGGCACCATCGCCGAAGCATCGCTGGAGAACCTGACGGCGACATTGTGGTTCCGAC
575 GCTTCGTCGCCGCACCATCACCGAACCATCGCTGGAGAACCTGACGACGACATTGGGGTTCCGAC
* *
15409048 GATCGGGGGGGTCGGGGGGGTGGTGTGGGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
640 GATCGGGGGGGTCGAGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
*
15409113 ATACTGGCCCCCTATCCCTCATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGC
705 ATACTGGCCCCCTATCCCTCATCACACCCCCTTAAAGAGCAATTGAGATTTTACAGATTTGTTGC
*
15409178 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
770 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACT
*
15409243 TCAAGTTTTTATCTGAATTTTTTTGTGCATG
835 TCAAGTTTTTATCTGAATTTTTTTATGCATG
*
15409274 CCAACGAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACAGTTTTCCGAAAAAATTTT
1 CCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACA-TTTTCCGAAAAAATTTT
* *
15409339 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
65 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCAT
* *
15409404 GAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTATAAGCCATAAAAATGGCATTAGC
130 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC
*
15409469 ATGCAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
194 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
15409534 TGTTTCTTTGGCCGTCGTAGTGCCCTTCTACCCGTCCGCTCGTTTTGTCAATTGGCTTAGGCATA
259 TGTCTCTCTGGCCGT-GTAGTGCCC--CTACCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATA
* *
15409599 TGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTAAGGGTTGCAGTAGCAGGATCGACACCAC
321 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-AAGGGTTGCAGTAGAAGGATCGACACCAC
* * * * *
15409663 GCAGA-GGGAGCCGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCTGGCTGAACGCCCACA
385 GCAGAGGGGACCCGACCGATCCCCGACTTGCACATCTCGCCCCTCTGGCCGGCAGAACACCCACA
* *
15409727 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
450 CGCTCGTTTCGTGGGTCAACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
15409792 TCCCAGCCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG-GCTCGAGCA-TGTGC
515 TCCCAGCCTAACATCGGACCGAACCGAGGGTTACGACAGCACATGCTGGTG-TC--GCATTGTGC
* * * * * *
15409855 -TGGT-GCCGCATTTTTCTTTACCAGGGCACCATCG-TCGGAGAACCTGACCGACGACGTTGGGG
577 TTCGTCGCCGCA----CCATCACC---GAACCATCGCT-GGAGAACCTGA-CGACGACATTGGGG
* * *
15409917 TTCTGACGATCGGGGGTG-C-AGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
633 TTCCGACGATCGGGGGGGTCGAGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
*
15409979 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAAT
698 GGCCCTTATACTGGCCCCCTAT-CC-C-T-----C------A-TCACACCCCCTTAAAGAGCAAT
*
15410044 TGAGATTTTACAGGTTTGTTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
748 TGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
15410108 CGGTCACAAAATCTTGTACACTTCAAGTTTTTAGT-TG-ATTTTTTTATGCATG
813 CGGTCACAAAATCTTGTACACTTCAAGTTTTTA-TCTGAATTTTTTTATGCATG
*
15410160 CCAAAAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACATTTTCCGAAAAAATTTTA
1 CCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACATTTTCCGAAAAAATTTTA
* *
15410225 AAAAATTCCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATG
66 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATG
*
15410290 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGACA
131 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG-CA
** * * * *
15410355 TGCAGTAATATGAAGATGTGCCTAAACTCGCCCACCACCCTATCGATCCACGGCTTGCGCATCCC
195 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * * * *
15410420 GTCTCTCTGGCTGATGTAGTG--CCTGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACAG
260 GTCTCTCTGGCCG-TGTAGTGCCCCTACCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGG
*
15410483 AGTTCATTCCCAATCTAAGATCAGAC
324 AGTTCATTCCCAGTCTAAGATCAGAC
15410509 TGGACTGAAG
Statistics
Matches: 1092, Mismatches: 106, Indels: 67
0.86 0.08 0.05
Matches are distributed among these distances:
868 5 0.00
869 159 0.15
870 6 0.01
871 93 0.09
872 4 0.00
873 56 0.05
874 52 0.05
875 231 0.21
876 31 0.03
881 60 0.05
883 1 0.00
884 1 0.00
885 213 0.20
886 60 0.05
887 78 0.07
888 42 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (865 bp):
CCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACATTTTCCGAAAAAATTTTA
AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCAT
GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
TCTCTCTGGCCGTGTAGTGCCCCTACCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGTAGAAGGATCGACACCACGCAGAG
GGGACCCGACCGATCCCCGACTTGCACATCTCGCCCCTCTGGCCGGCAGAACACCCACACGCTCG
TTTCGTGGGTCAACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
CCTAACATCGGACCGAACCGAGGGTTACGACAGCACATGCTGGTGTCGCATTGTGCTTCGTCGCC
GCACCATCACCGAACCATCGCTGGAGAACCTGACGACGACATTGGGGTTCCGACGATCGGGGGGG
TCGAGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCC
CTATCCCTCATCACACCCCCTTAAAGAGCAATTGAGATTTTACAGATTTGTTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTA
TCTGAATTTTTTTATGCATG
Found at i:15411638 original size:26 final size:26
Alignment explanation
Indices: 15411601--15411653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411591 GGTGACTTAG
* *
15411601 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15411627 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15411653 G
1 G
15411654 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15413336 original size:901 final size:902
Alignment explanation
Indices: 15411595--15414094 Score: 3710
Period size: 901 Copynumber: 2.8 Consensus size: 902
15411585 TCGGTGGGTG
* *
15411595 ACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATTGGA
1 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
* * * *
15411660 CCAGACCGAGGGTTGCGGCAGCACATACTGAACTTGGGCATGTGCTGGTGCTACATTTTTCTTTG
66 CCAGACCGAGGGTTGCGGCAGCACATACTGAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
* * **
15411725 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAACGGCGTTATTGGGGTTCCGACGATCG
131 TCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
*
15411790 GGGGGGCCGGGGGGTGTG-AGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
196 GGGGGGCCAGGGGGTGTGCA-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
15411854 CCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
260 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
15411919 TTGCTGCCAATAGCCATTAAAGTGTGTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTT
325 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15411984 GTACATTTCGAGTTTTTAGCTGAATTTTTTCATGCATGCCAACAAAAATACAAGGATCACGTCTA
389 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
15412049 CCAAGTTTGGGGCTAAAACTCCTTCTGAAAAACTTTTAAAAAATCTC-GAACCGTAAAAAGTTTC
454 CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CAGAACCGTAAAAAGCTTC
*
15412113 AAAAATCATGAAAAATA-AAAATTGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGA
518 AAAAATCATGAAAAATAGAAAA-TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15412177 CCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCTAA
582 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* * * ***
15412242 ACCCACCTACCATCCTATCGATCCATGGCATGCGCAT-CTCGTCTCTCAGGCCGGCGTAGTGCCC
647 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT-GTCTCTCTCACCGGCGTAGTGCCC
* *
15412306 GCCCGCCCACCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
711 GCCCGCCCACCCGCCCGCTCGTGTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
15412371 GATTGAAGCAGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGAGGGGGACCCAGCCGATC
776 GATTGAACCAGACCAAGGGTTACGGCAGCAGGATCAACAGCACACAGAGGGGGACCCAGCCGATC
* * * * *
15412436 CCC-TATTATGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTC
841 CCCGGATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAGGCTCGTTTCGCGGGTTC
* *
15412497 ACTTAGGCAAACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
1 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
* ** * * *
15412562 TCAGACCGAGGGTTGCGGCAATACATGCTGAGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCAGACCGAGGGTTGCGGCAGCACATACTGAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
* *
15412627 TCGAGGCACCATCGCAGGAGCATCGCCTGA-AACCTGACCGGCGGCATTGGGGTTCCGACGATCG
131 TCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
15412691 GGGGGGGCAGGGGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCC
196 GGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
15412756 CCCCATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTCAAATTTTAGAGGTT
261 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15412821 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAAAGGTCACAAAATCTTT
326 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
15412886 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAGCAAAACTACAAGGATAACGTCTAC
390 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
15412951 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACAAG-AAAAAGCTTCA
455 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAAC-CGTAAAAAGCTTCA
* *
15413015 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACC
519 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
15413080 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
584 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
** *
15413145 CCACCTACCACCCTATTTATCCACGACTTGCGCATCCTGTCTCTCTCACCGGCGTAGTGCCCGCC
649 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTCACCGGCGTAGTGCCCGCC
* * *
15413210 CGCCCGCCTGCCCGCTTGTGTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGA
714 CGCCCACCCGCCCGCTCGTGTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGA
* * * *
15413274 TTGCACCAGACCAAGGGTTGCGGTAGCAGGATCAACAGCACATAGAGGGGGA-CCAGGCCGATCC
778 TTGAACCAGACCAAGGGTTACGGCAGCAGGATCAACAGCACACAGAGGGGGACCCA-GCCGATCC
* * * * * *
15413338 CCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCTCGTAGGCTCGTTTCGCGGGTTG
842 CCGGATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAGGCTCGTTTCGCGGGTTC
* * * *
15413399 ACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTCAGATTGGA
1 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
* * ** *
15413464 CCAGACCAAGGATTGCGGCAGCACATTTTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
66 CCAGACCGAGGGTTGCGGCAGCACATACTGAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
* * * * * *
15413529 TCGTGGCACCATCGCCGGAGCAACGCCGGAGAACCTGACCGGCAGCATTCGGATTCCGATGATC-
131 TCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
15413593 GGGGGGCCAGGGAGGCGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT-GCCCTTATATTG
196 GGGGGGCCA-GG-GG-GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
15413657 GCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
258 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
15413722 GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
15413787 TTGTACACTTTGATTTTTTAGCTGAATTTTTTTTTGCGTGGCAAAAAAAATACAAGGATCACGTC
387 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
* * *
15413852 CACCAAGTTTGTGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCA-AACCGTAAAAAGCT
452 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGCT
* * *
15413916 TCAAAAATCATGAAAAATAGAAAATGAGTCGTCCTGCCTTGAAACTTCACGTGAAGGCTTAAAGG
516 TCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15413981 ACCATTGTGTGATTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
581 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
*
15414046 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
646 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
15414095 GATCCACGGC
Statistics
Matches: 1434, Mismatches: 149, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
900 5 0.00
901 605 0.42
902 347 0.24
903 32 0.02
904 410 0.29
905 35 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (902 bp):
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
CCAGACCGAGGGTTGCGGCAGCACATACTGAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG
TCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
GGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGCTTCAAA
AATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTCACCGGCGTAGTGCCCGCCCG
CCCACCCGCCCGCTCGTGTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTG
AACCAGACCAAGGGTTACGGCAGCAGGATCAACAGCACACAGAGGGGGACCCAGCCGATCCCCGG
ATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAGGCTCGTTTCGCGGGTTC
Found at i:15414108 original size:29 final size:29
Alignment explanation
Indices: 15414066--15414124 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
15414056 CCACCCTATC
15414066 GATCCACGGCTTGCGCATCCCGTCTCTCT
1 GATCCACGGCTTGCGCATCCCGTCTCTCT
15414095 GATCCACGGCTTGCGCATCCCGTCTCTCT
1 GATCCACGGCTTGCGCATCCCGTCTCTCT
15414124 G
1 G
15414125 GTCGGCGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.10, C:0.41, G:0.22, T:0.27
Consensus pattern (29 bp):
GATCCACGGCTTGCGCATCCCGTCTCTCT
Found at i:15414469 original size:26 final size:26
Alignment explanation
Indices: 15414440--15414489 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15414430 ATCTGATCTT
*
15414440 AGACTGGTAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
15414466 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15414490 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:15416244 original size:26 final size:26
Alignment explanation
Indices: 15416215--15416267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15416205 CTGGTCTGAT
*
15416215 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15416241 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15416267 C
1 C
15416268 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15417625 original size:904 final size:901
Alignment explanation
Indices: 15414705--15423445 Score: 10885
Period size: 904 Copynumber: 9.8 Consensus size: 901
15414695 ACGTCGACCA
* * *
15414705 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCT-AAGTGCCAATGCCTTTTTTATGG
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGG
* *
15414769 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCATTT
65 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
15414834 TTTATTTTTCATGATTTTTGAAGCTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAA
130 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
15414899 TTTTGGGCCCAAACTTGGTACACATGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
195 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
15414964 TAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
260 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
15415029 AATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGG
325 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
15415093 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCGC
390 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * * * *
15415158 ACGCCCCTCCCCCGTCCCCCCCGATCACCGAAACCCCAATGTCGC-CGGTCAGGTTCTCCTG-CA
455 A--CACC-CCCCCG-GCCCCCCGATCGCCGGAACCCCAATG-C-CTCGGTCAGGTTCTCC-GACG
* * * *
15415221 ATGCTCCGTCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGA-ACATGCTCGAGCCCAGCAT
513 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA-ACACATGCCCGAGCCCAGCAT
* * * * * * *
15415285 GTGCTTCCGTAACCCTCGGTCCGGTCCGATCTTTGACTGGGAATGAACTACATATGCTTAGACTG
577 GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTG
* * * * * *
15415350 AGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTCAACCGG-TAGAG
642 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAG
* * * * * * * * *
15415414 GGGC-AGATGTGCAAGCCAGGGATCAGCCAGGTCCCCCTCTGCATGCTGCTGATCC-ACT-ATCG
707 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-G
* ** *
15415476 CAACCCTCAGTTTGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
771 CAACCCTCAG-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
15415541 ACGAGCGGGCGGGCGGACAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
835 ACGAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
15415606 TC
900 TC
* *
15415608 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
15415673 TTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAACAGGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
15415738 GTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
15415803 TTTGGCCCCAAACTTGGTAGATGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
15415868 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTATCCCCATTTCAGACACTTTA
261 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* **
15415933 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGACAT
326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
15415998 TTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTA
391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * * * *
15416062 CACCCCCCCGGCCCGCCCGATCGTCGGAACCTCAATACCGTCGATCAGGTTCTCCAATGATGCTC
456 CACCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTC
** * *
15416127 CGACGATGGTGCCCCGGCGAAGAAAAATATGGCACCAACATATGGCC-AGGCCCAGCATGTGCTG
519 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGA-GCCCAGCATGTGCTG
**
15416191 TTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAAT
583 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCT-TATGCTTAGACTGGGAAT
** * * * * *
15416255 GAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGTGCTCAACTGGCCTGAGGGGCG
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * * * * **
15416320 GGATGCGCAAGCTGGGGATTGGTCGGGTCCCCCTCTACGTGCTGCTGATCCAGCTGCCGTGACCC
712 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC
* ** * * * ** *
15416385 TTAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATTCCTAAGCCAACTAACGAAATGA--
777 TCAGTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * * * * *
15416448 --GCGGATGGGCAGACGGGCACTATGCCGGCCAAAGAGACGGGACGCGCAAGCCGTGGATC
841 GGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
* ** *
15416507 ------GTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
15416566 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
15416631 CTATTTTTCACGATTTTTTAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
15416696 TTTGGCCCCAACCTTGGTAGACGTGATCCTTGTATTTTTTTTAGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
15416761 AAAAACTCGAAGTGTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTA
261 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * **
15416826 ATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTTAAGGT
326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
15416891 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCACACATCATGTGCACA
391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * * *
15416956 CACCCCCCCTCGGCCCCCTCGATCGCCGGATCCCCAACGCCTCTGATCTGGTTCTTCGACGATGC
456 CA-CCCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCTC-GGTCAGGTTCTCCGACGATGC
* * * *
15417021 TCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGAGCT
517 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* ** * * *
15417086 ACCATAACCCTCGGTCTAGTCTGATTTTTGACTGGGAATGAACTTCTTATGCTTAGACTGGGAAT
582 GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAAT
* * * * *
15417151 GAATTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAACCGACCAGAGGGGCA
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * *
15417216 GGATGCGCAAGCCGAGGATCGGCCAGGTCTCGCTCTGCATGCTGCCGATCCTGCTGCTGCAACCC
712 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC
* * * * *
15417281 TCGGTTCGGTCCGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC
777 TCAG-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
15417346 GGGCGGGAGGGCAGGCGGGCACTACACCGGCTAGAGA-A-AGGATGCGCAAGCCGTGGATC
841 GGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
* *
15417405 GATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
** * * *
15417470 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATAGCAAGATGACACGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * *
15417535 CTATTTTTCTTGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
15417600 TTTAGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATTTAGC
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGC
* *
15417665 TAAAAA-TGCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTT
260 TAAAAACT-CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15417729 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTGAGGGGGTGTGAGTTCTCAAG
324 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
15417794 GTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTATC-GCACCAATCACACATCATGTGCG
389 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
* * *
15417858 CACA-CCCCCCGGCCCCCCGATCGCTGGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGCT
454 CACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCT
* * *
15417922 CCGACGATGGTGCCCCGGCGAGGAAAAATGCGGCACCAACACATGCTCGAGCCAAGCATGTGCTG
518 CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * * *
15417987 CCGTAACCCTAGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAAT
583 CCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAAT
* * * * * * *
15418051 GAAATCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCATAGGGGTG
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * *
15418116 GGATGCG-AAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTACTGCCGCAACCC
712 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC
* * * * * *
15418180 TCAATCCGGTCTAATCTTAGACT-GAGAATGAACGCCATATGCGTAAGCCAATCGACGAAACGA-
777 TCAGT-CGGTCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * *
15418243 C---CGTGCGGGCAGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATC
840 CGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
* *
15418302 GATAGGGTGGTAAGT-GGTTTAGGCACATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGG
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGG
* *
15418365 CTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTT
65 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
15418430 TCTATTTTTCACGATTTTCAAAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAG
130 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
15418494 TTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAACATTCAGC
195 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
15418559 TAAAAACTCAAAATGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
260 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
15418623 AATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
325 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
15418688 ATTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGC
390 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * *
15418753 ACACCTCCCTCCCGGCCCCCCTGATCGCCGGAACCCTAATACCGCCGGTCAGGTTCT-C--CG--
455 ACA-C-CCC-CCCGGCCCCCC-GATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGAT
* ** *
15418813 G-T-----GATGGTGCCCCGACGAAGAAAAATGCAACACCAACACATGCCCGAGCCTAGCATGTG
515 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* * * ** * *
15418872 CTGTCGCAACCCTTGGTCTGGTCTGATCATAGACTAAGAATGAACTCCATATGCTTAGACTGGGA
580 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGA
* * * * *
15418937 ATGAACTTCGTATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAG-GGGG
645 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * * **
15419001 CCAGGATGCGCAAGCCAGGGATCGGACGGGTCCCCCTCTG-GATGCTGCCGATCCTGCTATTGCA
710 -CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCG-TGCTGCCGATCCTGCTGCTGCA
* *
15419065 ACCTTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
773 ACCCTCAGTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * *
15419130 GAGCGGGC---C-GGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATC
837 GAGCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
* ** * *
15419191 GATAGGGTTGTAGGTTAGTTTAGGCACATCTTCATATTTTTGCATGCCAATGGCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
15419256 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
15419321 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
15419386 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
15419451 AAAAACTCGAAGTGTAAAAGATTTTATGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTA
261 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * **
15419516 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTATGGGGGTGTTAGTTCTCGCTGT
326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
15419581 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * *
15419646 CACCCCCTCTGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
456 CACCCCC-CCGGCCCCCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTC
** * * * * * *
15419711 CGGTGATGCTGCCTCGACGAAGAAAAATGTGGCACCAACACATGCCCGGGCCCAGCATGTG-TAA
519 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT-G
* * ** * *
15419775 CCGTAACCCTCGGTCCGGTCCAATCTTAGACTGCGAATGAAC-TCTGTATGCTTAGACTGTGAAT
583 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCT-TATGCTTAGACTGGGAAT
** * ** * * *
15419839 GAACTCCGTATGCCTAAGTCAACCCACGAAATAAGGGCACGGGTGCTCAACCGACCAGAAGGGCG
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * * * ** * *
15419904 GGATGCATCAAGCCGGGGATCAGCCAGGACCCCCTCTATGTGCAGTCGAT-CTCGCTGCTGCAAC
712 GGATGC-GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT-GCTGCTGCAAC
* *
15419968 CCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
775 CCTCAGTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * ** * * * *
15420032 GCAGGCGGACGGGTGGGTGGGCACCACGCCGGCCAGAGACACAGGATGTGCAAGCCGTGGATC
839 GCGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
* * * *
15420095 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTACATGCCAATACCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
15420160 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
15420225 TTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAATGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
15420290 TTTAGCCCTAAACTTGGTTGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
15420355 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTATACACTTTA
261 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
15420420 ATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCAATGT
326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
15420484 TTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
** * * * *
15420549 CA--CCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCGATCAGGTTTTCCAACGATGCTC
456 CACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTC
** * * * *
15420612 CGACGATGGTGCCCTAGTGAAGAAAAATGTGGCACCAACACATGCCCGACCCCAGCCTGTGCTGC
519 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* *
15420677 CGTAA-CC-C--TC--G---G-TC-----C-----A-G---TTC-GAT-CTTAGACTGGGAATGA
584 CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAATGA
* * * *
15420716 ACTCCATATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
* * * *
15420781 ATGCGCAAGCCGGGGATTGGCCGGGTCCACCTCTGCATGCTGTCGATCCTGCTGC-GACAACCCT
714 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTG-CAACCCT
* * * * * *
15420845 CAATCCAGTCTGATCTTAGACTAGGAATGATCTTCGTATGCCTAAGCCAACCGTCGAAATGAGCG
778 CAGT-CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
15420910 GGCGGCCGGGTAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
842 GGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
*
15420970 GATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
15421035 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * **
15421100 CTATTTTTCACAAATTTTGAAACTTTTTACAGTTCGGGACTTTTTAAAATTTTTTCAAAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
15421165 TTTGGCCCCAAAACTTGGTAGACGTGATCCCTGCACTTTTGTTGGCATGCATAAAAAAATTCAGC
196 TTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
15421230 TAAAAACTCGAAGTGTACAAGATTTTTTGATCATTTGAAAAAACTGTCCCCATTTCAGACACTTT
260 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
15421295 AATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGG
325 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * ** *
15421360 TTTGAAGAGGGATAAGGGGACAATATAAGGGCCAAGTACCAGCACCTATTGCACATCATGTGCGA
390 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * *
15421425 ACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCTAATG-CTGCCGGTCAGGTTCTCCGGCGATGC
455 ACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCT--CGGTCAGGTTCTCCGACGATGC
* * * * * * * *
15421488 TCTGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCAAATG-CCGAGCCTAACATGTGCT
517 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * * * * * *
15421552 GCCCCCAACCATCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAA
582 G-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAA
* * **
15421617 TGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC
646 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC
* ** * *
15421682 GGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTG-TCGTAAC
711 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GCAAC
* * * * *
15421746 CCTCAGTCTGGT-TCAATCTTAGACTACGAATGAACTCCGTACGTCTAAGCCAATCGACGAAACG
775 CCTCAGTC-GGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * * **
15421810 AGCGGCCGGGCGGGCGGGGTAGCAGGCACTACGCCGGTCAGAGTGA-TGCGATTAGCAAGCCGTG
838 AGCGGGCGGGCGGGC--AG--GCGGGCACTACGCCGGCCAGAGAGACAG-GATGCGCAAGCCGTG
15421874 GATC
898 GATC
* * **
15421878 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTCTACGGGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
15421943 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGGAGTTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* ** * * *
15422008 CTATTTTTCACGATTTTTGAATCTTTTTGTGGTTCGGGATTTTTTAGAATTTTTTCAGAAGGCGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * *
15422073 TTTGGCCCTAAACTTGGTAGACATGGTCCTTGTATTTTTGTTGACATGCACAAAAAAAGTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
15422138 TAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
261 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
15422203 ATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTT---GAGGTGTGAGTTCTTGAGGT
326 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
** *
15422265 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCA
391 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * *
15422330 CACCCACCCC-GCCCTCCCGATCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCT
456 CACCC-CCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCTC-GGTCAGGTTCTCCGACGATGCT
** * * * *
15422394 CCGGTGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCTG
518 CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
15422459 CTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAATACGTATGCTTAGACTGGGAATG
583 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAATG
* ** * *
15422524 AACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGGGGCGG
648 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
* * * ** * * *
15422589 GATGCGCAA-CC-----T-----GAGTCCCCTTCTGCGTACTGTAGATCCTGCTACCGTAACCCT
713 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCT
* * * * * * *
15422643 CGGCCCGGTCTGATCTTAGAATCGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGGGCG
778 CAG-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * ** *
15422708 GGCGGACGGGTGGACAAGCGGGCGGGCACTAAGTCGACCAGAGAGGCAGGATAAGCAAGCCGTAG
842 GGCGG--GCG-GG-C-A---GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGG
15422773 ATC
899 ATC
* * *
15422776 GATAGGGTGATAGGCGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * **
15422841 TTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCAATTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
15422906 CTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTT-GGAAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * *
15422969 TTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
** *
15423034 AAAAACTTTACGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
261 AAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
15423099 AATAGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
325 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
15423164 TTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
390 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * * *
15423229 ACACCCCCCCGACCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGG-T-T----C--T-CT-
455 ACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCCGACGATGCTC
* * * * *
15423284 -GACGATGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
519 CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* * *
15423348 TGCAACCCTCAGTCCT-GTCTGATCTTAGACTGGGAATTAACTT-TGTATGCTTAGACT-GGAAT
584 CGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTTCT-TATGCTTAGACTGGGAAT
* *
15423410 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
647 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
15423446 AGTCAGGTGG
Statistics
Matches: 6847, Mismatches: 834, Indels: 330
0.85 0.10 0.04
Matches are distributed among these distances:
873 1 0.00
874 46 0.01
875 365 0.05
876 154 0.02
877 92 0.01
878 93 0.01
879 1 0.00
880 2 0.00
881 1 0.00
882 2 0.00
884 1 0.00
886 1 0.00
887 43 0.01
888 272 0.04
889 192 0.03
890 149 0.02
891 120 0.02
892 162 0.02
893 505 0.07
894 198 0.03
895 122 0.02
896 509 0.07
897 156 0.02
898 224 0.03
899 226 0.03
900 750 0.11
901 173 0.03
902 51 0.01
903 535 0.08
904 927 0.14
905 381 0.06
906 22 0.00
907 150 0.02
908 221 0.03
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCTCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG
TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATC
Found at i:15418049 original size:26 final size:26
Alignment explanation
Indices: 15418011--15418063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418001 TCGGTCTGAT
* *
15418011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
15418037 CTTAGACTAGGAATGAAATCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
15418063 C
1 C
15418064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:15419838 original size:26 final size:26
Alignment explanation
Indices: 15419799--15419851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15419789 CCGGTCCAAT
*
15419799 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
15419825 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
15419851 C
1 C
15419852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:15421607 original size:26 final size:26
Alignment explanation
Indices: 15421578--15421630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15421568 CTGGTCCGAT
*
15421578 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15421604 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15421630 C
1 C
15421631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15423420 original size:25 final size:26
Alignment explanation
Indices: 15423371--15423422 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15423361 CCTGTCTGAT
* **
15423371 CTTAGACTGGGAATTAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15423397 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15423422 C
1 C
15423423 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15425008 original size:26 final size:26
Alignment explanation
Indices: 15424957--15425009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15424947 CTGGTCCAAT
* ***
15424957 CTTAGACTGGGAATGGACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15424983 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15425009 C
1 C
15425010 CAACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15425859 original size:26 final size:26
Alignment explanation
Indices: 15425830--15425882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15425820 GTGATCCGAT
* *
15425830 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15425856 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15425882 C
1 C
15425883 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15426733 original size:26 final size:26
Alignment explanation
Indices: 15426697--15426755 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15426687 CTCGGTCCGG
* *
15426697 TCCG-ATG-TTAGACTGGGAATGAGC
1 TCCGTATGCTTAGACTAGGAATGAAC
15426721 TCCGTATGCTTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
15426747 TCCGTATGC
1 TCCGTATGC
15426756 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:15428542 original size:26 final size:26
Alignment explanation
Indices: 15428503--15428552 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15428493 TGGTCCAATA
*
15428503 TTAGACTGGGAATGAACTCCGTATAC
1 TTAGACTGGAAATGAACTCCGTATAC
15428529 TTAGACTGGAAATGAACTCCGTAT
1 TTAGACTGGAAATGAACTCCGTAT
15428553 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATAC
Found at i:15431175 original size:26 final size:26
Alignment explanation
Indices: 15431146--15431198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15431136 CCGATCCGAT
*
15431146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15431172 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15431198 C
1 C
15431199 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15432052 original size:26 final size:26
Alignment explanation
Indices: 15432023--15432075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15432013 CCGGTCTGAT
*
15432023 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15432049 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15432075 C
1 C
15432076 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15433840 original size:26 final size:25
Alignment explanation
Indices: 15433801--15433859 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 25
15433791 CCTTCAGTCC
*
15433801 GTCCG-ATCTTAGACTGGGAATGGA
1 GTCCGTATCTTAGACTGGGAATGAA
15433825 GTCCGTATGCTTAGACTGGGAATGAA
1 GTCCGTAT-CTTAGACTGGGAATGAA
*
15433851 CTCCGTATC
1 GTCCGTATC
15433860 CCTAAGTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 5 0.16
25 3 0.10
26 23 0.74
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (25 bp):
GTCCGTATCTTAGACTGGGAATGAA
Found at i:15434115 original size:889 final size:894
Alignment explanation
Indices: 15423397--15434737 Score: 13692
Period size: 902 Copynumber: 12.8 Consensus size: 894
15423387 ACTTTGTATG
* * *
15423397 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGTCAGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* ** *
15423461 CGGGCATTACACCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15423526 TTAGGCACATCTTCATATTTCTGCGTG-CATTGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15423590 TCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * **
15423655 AAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAAAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
15423720 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
**
15423785 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15423850 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA-GGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15423914 CAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCTG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCG
* * * * *
15423979 ATTGCCAGAACCCCAATGCTGTCGGTCAGGTTCTCCGGT--GATGGTGCCTC-AGCGAAGAAAAA
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTCCGATGGTGCCCCGA-CGAAGAAAAA
*
15424041 TACGGCACCAGCACATGCCC-ATGCCCAGCATGTGCAT-CCGCAACCCTC-G---G--C---C--
649 TGCGGCACCAGCACATGCCCGA-GCCCAGCATGTGC-TGCCGCAACCCTCGGTCCGTCCGATCTT
* *
15424093 ---C--GG--T---CT--G-AT-CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
712 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
15424144 AAATGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
777 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * * *** * **
15424209 CCCCCTCTGCCTGCTACCGATACTGTTG-CTTTAACCCTCGGTCCGATGTGAT
842 CCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
15424261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-A-GCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * * * * *
15424318 CGGGCACTACGCCGGCCAAAGAGACGGCATGTGCAAGCCGTGGATCAATTGGGTCGTAGGTGGG-
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15424382 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGTTGTAAATTTATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
15424447 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCACGATTTACG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
15424512 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGTAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
15424577 CACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAGTTGAGCTAAAAAATTGAAGTGTATAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15424641 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTAAG-AGCAAA
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAA
* * *
15424705 CTTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15424770 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGG-CCCCCTG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * *
15424834 ATCGCCAGAACCTCGATGCCGTCGGTCAGGTTCTCCG--ACGATGGTGCCCCGACGAAGAAAAAT
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTCCGATGGTGCCCCGACGAAGAAAAAT
* * ** * *
15424897 G-GG-AGTCCAGCACATGCTCGAGCCCAGCATGTGCTGTCATAACCCTCGGTCTGGTCCAATCTT
650 GCGGCA--CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTCCGATCTT
* ** * *
15424960 AGACTGGGAATGGACTTTGTATGCTTAGACTGGGAATGAACTCCATATGCC-AACGTCAACCCAT
712 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAACCCAC
** * * * * * * * * * *
15425024 GAAACGAGCAAGCAGGTGCTCAGTCGGCCAAAGGGGCGAGATGCGTAATCCGAGGATCGATCGAG
776 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
** * * * * * *
15425089 TCCCGTTCTATGTGCTGTCGATCCCG-T-AGCCGTAACCCTCGGTTCGGTCTGAT
841 TCCCCCTCTACGTGCTGCCGATCCTGCTGA-CCGCAACCCTCGGTCCGGTCCGAT
*
15425142 CTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * *
15425207 TGGGCACTACATCGGCCAGAGAGACGGGATGCGGAAGCCGTGAATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15425272 TTAGGCACATCTTCATATTTCTGCGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15425337 TCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * ** *
15425402 AAACTTTCTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAAATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
15425467 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * **
15425532 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTAACAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15425597 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15425662 CAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCACCCCCG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCG
* * *
15425727 ATCGCCTGAACCCCAATGCCGTCGGTCAGGTTCTCCG--GCGATGGTGCCCCGGCGAAGAAAAAT
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTCCGATGGTGCCCCGACGAAGAAAAAT
* *
15425790 GCGGCACCAGCACATGCCCGAGCCTAG--TATG-T---G--A-----------TCCGATCTTAGA
650 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGA
* * *
15425836 TTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCAAAGTCAACCCACGAAA
715 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
15425901 CGA--------GCG-T------G-C----GGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCC
780 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * *
15425946 CCTCTGCGTGCTGTCGATCCTGCTG-CCGCAA-AC-C--T-CGATCCGAT
845 CCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * * * *
15425990 CTTAGACTAGGAATGAACTCCATATGCCTAATCCAACCGACAAAACAAGC--G--GGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * * * *
15426051 CGGGCACTATGTCGGCCAGAGAGACGGGGTGCGCGAGCTGTGGATCGATAAGGTGGTAGGTGGGC
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * ** *
15426116 TTAGACACGTATTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15426181 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
15426246 AAACTTTTTTCGGTCCGAGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGACCGCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15426311 GACGTGATCCTTGTATTTTTGTTGGCGTGCA-AAAAGAAATTCAGCTAAAAACTTGAAGTGTACA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
15426375 AGATTTTGTGACCATTTGAAAAATGTATCCCCATTTCAAACACTTTAATGGCTACAGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15426440 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15426505 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG-CCCCCTG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * *
15426569 ATCGTCGGAACCCCAATGCTGTCGGTTAGGTTCTCCGATGATGCTCCGGCAATGGTGCCCCGGCG
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC------GCTCC-G--ATGGTGCCCCGACG
* * *
15426634 AAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTCCCGCAACCCTCGGTCCGGTC
641 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTC
* * *
15426699 CGATGTTAGACTGGGAATGAGCTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
705 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** *
15426764 ACCCACAAAACGAGCGTGCGTGCGCTCAACCGACCAGAGGGGCGGGATATGCAAGCCGAGGATCG
770 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * ** **
15426829 GTTGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-CCACAACCCTCGATCCAATCTAAT
835 GTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * *
15426888 CTTAGATTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAGAGCGGG-AGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCA-GGCGGGCGG
* ** * * *
15426952 GCAGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTAGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
15427017 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGCAAATTCATATATTG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15427082 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
15427147 GAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGCAATGAGTTTTGTCCCCAAACTTGGA
260 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15427212 AGACGTAATCCTTGTATTTCTATTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
15427277 AGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15427342 CCTGTAAAATCTCAAATACTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15427407 CCAATATAAGGGCCAAGTACCTGCACCCAACGCACATAATGTGCGCACACCACCCC-CCAGCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGC--CCCC
**
15427471 CCGATCATCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCG
582 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC------GCT-C--CGATGGTGCCCCG
** * * * *
15427535 ACGAAGAAAAATATGACACCAGCACATGCCCGACCCCAGCATGTGCTGCCGTAACCCTTGGTCCG
638 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-
* * * *
15427600 GTCTGATCTTAGACTGGGAATGAACTCCGCATGCTT-GATTGGGAATGAACTCCGTATACCTAAG
702 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * ** *
15427664 TCAACCCACGAAACGAGTATGCGGGCGTTCAGTCGGCCAGAGGGGTGGGATGAACAAGCCGAGGA
767 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * ** *
15427729 TCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTACT-ACCGTAACCCTCGATCTTGTCCAAT
832 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * * *
15427791 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACTGACGAAACTAGTGGGCA--------GG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * *
15427848 CGGGCACTATGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGC
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ***
15427913 TTAGGCATATCATCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15427978 TCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * **
15428043 AAACATTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGAATGGATTTTTGG-GGCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGT
* *
15428106 AGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** * *
15428171 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTGTTTCAGACACTTTAATTGCTACTGGTAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15428236 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15428301 CCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCCCCCTGGCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCC
* * *
15428366 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCTGG
583 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---GCTC---CGATGGTGCCCCGA
* ** *
15428431 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTGG
639 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CG
* * * *
15428496 TCCAATATTAGACTGGGAATGAACTCCGTATACTTAGACTGGAAATGAACTCCGTATGCCTAAGT
703 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
15428561 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATACGTAAGCCGGGGAT
768 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
15428626 CGGTCGGGTCCCCCTCTGCATGCTGCTGATCCTGCT-ACTGCAACCCTTGGTCCGGTCTGAT
833 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * *
15428687 CTTAGA-TAGGTAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGAGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCAGGCGG
* * * * *
15428751 GTGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGTTGGTAGG
61 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
15428816 TGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG-AAATTTCATA
126 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATA
* *
15428880 CAAT-G--------G---T--C---------CATGGCAAGAGGACTCGTTTTCTATTTTTCACAA
190 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * * * * *
15428922 TTTTCAAAACTTTTTACGGTTCGAGATTTTTCAAACTTTTTTCAGTAGGAGTTTTGGCTCCAAAA
255 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* ** * * *
15428987 TTGGTAGACGCGATCCTTGTATTTTCATTGGCAAGCAAAAAAAAATTCAGCTAAAAACTCGAACT
320 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15429052 GTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
15429117 GCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTGAGGTTTGATGAGGGATA
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
15429181 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** * * *
15429246 TACCGATCGCTGGAACCCTAATGCCGTCAGTTAGGTTCTCCGACGATGCTCCTGCGACGCTCCGG
580 CCCCGATCGCCGGAACCCCAATGCCGTC-----GG---T-C-A-G--G-TTCT-C--CGCTCC--
* * * * * * *
15429311 TGATGGTGCCCGGGCGAACAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCGGGCGC
626 -GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
15429376 AA-CC-C--T-CG---G-TC-----C---G---G---TCCG-A----T---CTGGGAATGAACTC
690 AACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
15429410 CGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGTTCAGCTGGCCAGAGGGGTGGGATGA
755 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * *
15429475 TCAAGTCGGGGATC-GACTGGGTCCCCCTCTGCGTGCTGCCGATCCTG-TTACCGTAACCCTCTG
820 GCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGG
*
15429538 CCCGGTCCGAT
884 TCCGGTCCGAT
* * * *
15429549 CTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAATGAGTGGGCAGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
*
15429614 AGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15429679 TTAGGCACATATTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15429744 TCTCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *** * * *
15429809 AAACTTTTTATGGTTCCAAATTTTTTTAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
15429874 GACATGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTTAGCTAAAAACACGAAATGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15429939 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAGACTTTAAAGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15430004 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
15430069 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCC--CCGACCCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCC--CCCC
* * * *
15430132 CGATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTG-CCCGG
583 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---GCT-C--CGATGGTGCCCCGA
* * * * *
15430196 CGAAGAAAAATGTGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCAAG
639 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CG
** * * * * *
15430261 TCTAATCTTAGATTGGGAGTGAACTCCGAATGCTTAGATTGGGAATGAACTCGGTATGCCTAAGT
703 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
15430326 CAACCCACGAAACGAGCGTGCGGGTACTCAGTCGGCCAGAGGGGCGGGATGCGCAATCCAGGGAT
768 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
15430391 CGGTTGCGTCCCCCACTACGTGCTACCGATCCTGCTG-CCACAAGCCTCGGTCTGGTCCAAT
833 CGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* ** *
15430452 CTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCATGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * *
15430517 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAGGTCGTGGATCGATAGAGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15430582 TTAGGCACATCTTCATA-TT-T---T-----TG---------TGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15430628 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
15430693 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-----GA-TTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
15430752 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15430817 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15430882 CTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
15430947 CAATATAAGGGCCAAGTACCAGCACCCA-CGGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
521 CAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
** * * *
15431011 GATCGCCGGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGCTTCGGCGATGGCGCCTCGAC
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---GC-TC--CGATGGTGCCCCGAC
* * * * *
15431076 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGTATGTGCCGCCACAACCCTTGGTCCGAT
640 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-T
* *
15431141 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCGTAAGTC
704 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** * * *
15431206 AACGCACGAAATGAGTGTGCGGGAGCTTTGCCGACCAGAGGGGTGGGATGCGTAAGCCGGGGATC
769 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *
15431271 GGTCGAGTCCCCCTCTACGTG-TAGCCAATCCTGCT-ACCGCAACCCTCGGTTCTGTCCGAT
834 GGTCGGGTCCCCCTCTACGTGCT-GCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* *
15431331 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCAGGCGGG
* * * * * **
15431396 TGGGCGAGCACTATGTCAGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAAAGTGGTAGGT
62 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
15431461 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
15431526 ATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
192 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
15431591 TTTGAAACTTTTTGA-GGTTCGGGTTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAATT
257 TTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
15431655 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
321 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
15431720 TACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTAGCAG
386 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
15431785 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
451 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15431850 AGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
516 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* * * * *
15431915 CCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCT---CTAGCGATGGTGCCCCGACGAAA
580 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCT-CCGATGGTGCCCCGACGAAG
* *
15431977 AAAAATGCGGCACCAGCACAT------G--C--CA----------CAACCCTTGGTCCGGTCTGA
644 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTCCGA
* *
15432022 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCGTAAGTCAACC
708 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * * *
15432087 CACGAAATGGGCATGTGGGCGCTTTGCCGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCAGTC
773 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * * *
15432152 GGGTCCCCCTCTACGTGCAGCCAATCCTGCT-ACCGCAACCCTCAGTTCAGTCTGAT
838 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * *
15432208 CTTATACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCA----GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * *
15432269 CGGGCACTATGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTTGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15432334 TTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15432399 TCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
15432464 AAACTTTTTGCGGTTCGTGATTTTTT-AAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
15432527 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
15432592 GATTATGTGACCAATTGAATATAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15432657 CTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATTAGGGATAAGGGGG
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGG
15432722 -CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
** * * * * **
15432786 ATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCAACGATGGTG-CCTGGTG
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC------CGCT-C--CGATGGTGCCCCGACG
* * * * *
15432850 AAGAAAAATGCAGCTCCAGCAAATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATC
641 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-TC
* * * * * *
15432915 CAATCTTAGACTGGGAATGAACTCTGAATGCTTAGACT-AGAATGAACTCAGTATGTCTAAGTCA
705 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * ** * *
15432979 ACTCACGAAATGAGCGTACGGGTGCTCAGCCTACCAAAGGGGCGAGATGCGCAAGCCGGGGATCG
770 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
15433044 GCCGGGTCCCCCTCTGCGTGCTGCCAATCCTACT-ACCACAGCCGTCGGTCCGGTCCGAT
835 GTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * * ** * *
15433103 CTTAGACTAGGAATTAACTCCGTATGCCCAAGCCAACCGACGAAACAAGCATGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
* * * * * * *
15433168 CGGGCACTACGCCGGCTAGAGAGACGGGATACGCAAGTCATGGATCGATAGAGTGGTAGGTGAGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15433233 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * * *
15433298 TCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACAATTTCTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15433363 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15433428 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15433493 GATTTTGTGACTATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15433558 ATGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15433622 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCCGA
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
*
15433687 TCGCCGGAACCCCAATGCCGTCTGTCAGGTTCTCCG-T-CGATGGTGCCCCGACGAAGAAAAATG
586 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTCCGATGGTGCCCCGACGAAGAAAAATG
* * *
15433750 CGGCACCAGCACATGCCCGATCCCAGCATGTGCTGCCGCAACCTTCAGTCCGTCCGATCTTAGAC
651 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGAC
* * * *
15433815 TGGGAATGGAGTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCATGAAAC
716 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
15433880 GAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
781 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * * *
15433945 CTCT-TGTGCTGCTGATCCT-ATGACTGCAACCCTTGGTCCGGTCCAAT
846 CTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
* * * * * *
15433992 CTTAGACCGGGAATGAACTCCGTATGCCAAAGCCAATCGACGAAATGAGCGGGCTGGCGGGCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
*
15434057 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15434122 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTTATTA-AATG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATG
*
15434186 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * ** * **
15434251 AAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAATATTTTTTACCCCAAACTTGGT
260 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
15434316 AGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AGAGTGTAC
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTAC
15434380 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
15434445 ACCAGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
15434510 GCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGACCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC
15434575 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCTG
583 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---GC-TC--CGATGGTGCCCC-G
** * * * **
15434640 -CGAAGAAAAATGCGGCACCAGCACATGCAAGAGCCAAGCATGTGCTGCCGTAACCCTCAGTTTG
638 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCC
* * *
15434704 GTCCAATCTTAGACTGGGAAAGAACTCCATATGC
702 GTCCGATCTTAGACTGGGAATGAACTCCGTATGC
15434738 CTAAGCCAAC
Statistics
Matches: 9079, Mismatches: 1050, Indels: 657
0.84 0.10 0.06
Matches are distributed among these distances:
842 37 0.00
843 6 0.00
844 468 0.05
846 1 0.00
848 52 0.01
849 1 0.00
850 1 0.00
851 2 0.00
852 1 0.00
853 100 0.01
854 4 0.00
855 97 0.01
856 173 0.02
857 303 0.03
858 129 0.01
859 5 0.00
860 1 0.00
861 5 0.00
862 170 0.02
863 1 0.00
864 11 0.00
865 37 0.00
866 47 0.01
867 250 0.03
868 14 0.00
869 214 0.02
870 7 0.00
871 51 0.01
872 16 0.00
873 148 0.02
874 5 0.00
875 6 0.00
876 25 0.00
877 248 0.03
878 313 0.03
879 266 0.03
880 7 0.00
881 406 0.04
882 76 0.01
883 143 0.02
884 126 0.01
885 149 0.02
886 167 0.02
887 2 0.00
888 7 0.00
889 552 0.06
890 465 0.05
891 248 0.03
892 6 0.00
893 149 0.02
894 325 0.04
895 520 0.06
896 220 0.02
897 46 0.01
898 52 0.01
899 213 0.02
900 154 0.02
901 154 0.02
902 646 0.07
903 464 0.05
904 134 0.01
905 16 0.00
906 1 0.00
907 7 0.00
908 408 0.04
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCTCCGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
CTCTACGTGCTGCCGATCCTGCTGACCGCAACCCTCGGTCCGGTCCGAT
Found at i:15436932 original size:876 final size:875
Alignment explanation
Indices: 15434759--15438097 Score: 4112
Period size: 894 Copynumber: 3.8 Consensus size: 875
15434749 GACGAAATGA
* * * *
15434759 GCGGGCGGGCACTACGCCGGCCAGAGGGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
1 GCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
15434824 TGCGTTTAGGCACATCCTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
15434889 AATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTTTCGATTTTTCACGAT
131 AATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
15434954 TTTTGAAACTTTTTACGGTTCAAGATTTTTT-AAATTTTTTCAGAAGGATTTTTTGCCCCAAACT
196 TTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGCCCCAAACT
* * * *
15435018 TGGCAGAT-GTGATACTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGT
260 TGGTA-ATCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
15435082 GTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15435147 GCAAACC-AGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
389 ACAAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
*
15435211 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----CC--A
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* *
15435269 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTGCGACGATGGTGC
519 CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT-CGACGATGGTGC
*
15435334 CCCAGCTAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCAG-AACCCTC-
583 CCCAG-TAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCA
* * * * * *
15435397 GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGATCTCCGTCTG
646 G-TCCGATCCGATCTTAGACTGGGAATGAACTCC-T-TG-ATATACC--TAA-G---T-CATC--
* * *
15435462 CCTAAGTCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGTGGGATGCACAAGC
698 CC---GT------A--AAACGAGCGTGCGGGCGCTCAGCC-TCCAGAGGGGTGGGATGCGCAAGC
* * * ** *
15435527 CAGGGATCGGTCGAGTCCCCCTCTGC-GTACTGCCGATCCTGCTGCCGCAACCCTCAGTTCGGTC
751 CAAGGATCGGTCG-GTCCCCCTCTACTGTA-T--CGATCCTGCTGTCGCAACCCTTGGTCCGGTC
* * * **
15435591 CGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTAATGAAACGAGCACGCGGGCGG
812 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGG
* ** ** * *
15435655 GCAGGTGGGCACTATACCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGG
1 GCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
15435720 TGGGTTT-TGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
15435784 AATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCTAGACGACTCGTTTTCTATTTTTCAAGAT
131 AATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
15435849 TTTCGAAACTTTTTATGGTTC-AGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACT
196 TTTCGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAAACT
* * * *
15435912 TGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAGAAACTCGAAGTG
260 TGGTAATCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* *
15435977 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTGCTGGCAA
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
*
15436042 CAAACCT-GTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
390 CAAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
15436106 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-C
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * *
15436170 CCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
520 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT-CGACGATGGTGCC
* * * * * *
15436235 CC-GCTAAAGAAAATTATGGCACCAGCACATACCCGAGCCTAGCATGTGCTGCTGCAACCCTCAT
584 CCAG-T-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
*
15436299 TCTGATCCGATCTTAGACTGGGAATGAACT-C-TG-TATACCTAAGTCATCCCGTAAAACGAGCG
647 TCCGATCCGATCTTAGACTGGGAATGAACTCCTTGATATACCTAAGTCATCCCGTAAAACGAGCG
*** * *
15436361 TGCGGGCGCTCAGCCATCCAGAGGGGCAAGATGCGTAAGCCAAGGATCGGTCAGGTCCCCTTCTA
712 TGCGGGCGCTCAGCC-TCCAGAGGGGTGGGATGCGCAAGCCAAGGATCGGTC-GGTCCCCCTCTA
* *
15436426 CTGTTATCGAT-CTGCTGTCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
775 CTG-TATCGATCCTGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
15436490 ATGCCTAAGCCAACCGACGAAACGAACGGGCAGGTGG
839 ATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGG
* * *
15436527 GTGGGCAGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGCTGGTAGG
1 GCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* ** *
15436592 TGGGTTTAGGCACATCTTCATATTTCTGCATGGAAATGCCATTTTTATGACTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
15436657 AATGGTCCTTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
15436722 TTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAAATTTTTTTGGAATGAGTTTTAGCCCCAAAC
196 TTTCGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTT-GCCCCAAAC
* * * * *
15436787 ATGGTAATCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCTGCTAAAAACTCGAAGC
259 TTGGTAATCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
*
15436852 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15436917 ACAAACCTA-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
389 ACAAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
* * * *
15436981 ATGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACGTCATGTGCACACACCCCCCCGGC
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* ** * *
15437046 CCCCCTCGATCGCCGAAACCGTAATGCCGTCGATCAGGTTCTCCGATGATGCTC--C---GGT--
519 CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCGACGATGGTGC
* * * *
15437104 ----G-AAGAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
583 CCCAGTAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT
*
15437164 CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
648 CCGATCCGATCTTAGACTGGGAATGAACT-C-----C-----TT--G-AT--A-----TA--CCT
* * * *
15437229 AAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGTGGGATGCGCAAGCCAA
690 AAGTCATCCCGTAAAACGAGCGTGCGGGCGCTCAGCCT-CCAGAGGGGTGGGATGCGCAAGCCAA
* ** * * * *
15437294 GGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTATTGTAACCCTTGGTCCGGTCCAAT
754 GGATCGGTC-GGTCCCCCTCTAC-TG-TATCGATCCTGCTGTCGCAACCCTTGGTCCGGTCCGAT
* * * *
15437359 CTTAGACTAGGAATGAACACCGTATGCCTAAGCCAACCCACG-AACGAGCGGCCGGGCGG
816 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGG
* * * *
15437418 ACGGGCAGGCACTACGCCGGCCAGAGATACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGG
1 GCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
15437483 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
15437548 AATGGTCCCTT-AAGCTTCACGTGAAATTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
15437612 TTTCAAAAC-TTTTATGGTTTGAGATTTTTTAAAATTTTTTTGAAAGGA-TTTTCGGCCCCAAAC
196 TTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT--GCCCCAAAC
* *
15437675 TTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGT
259 TTGGTAATCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
15437740 GTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
15437805 GCAAACCTGTAAAGAGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
389 ACAAACC--T----AGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* * *
15437870 AGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACACCCA
448 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * **
15437935 CCCGGCCCCCCCGATTGTCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGGTGATGCTACGGTGA
513 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT-CGACGA
* * * *
15438000 TGGTGCCCCAGTGAAGAAAGATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAAC
577 TGGTGCCCCAGT-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
15438065 CCTCGGTCCGGTCCAATCTTAGATTGGGAATGA
641 CCTCAGTCCGATCCGATCTTAGACTGGGAATGA
15438098 GCTTCGTATG
Statistics
Matches: 2139, Mismatches: 228, Indels: 140
0.85 0.09 0.06
Matches are distributed among these distances:
864 78 0.04
867 1 0.00
871 1 0.00
872 140 0.07
873 136 0.06
874 67 0.03
875 25 0.01
876 252 0.12
877 7 0.00
878 41 0.02
879 1 0.00
881 1 0.00
882 2 0.00
883 1 0.00
885 2 0.00
887 7 0.00
888 154 0.07
889 19 0.01
890 136 0.06
891 150 0.07
892 65 0.03
893 1 0.00
894 294 0.14
895 268 0.13
896 64 0.03
899 7 0.00
900 140 0.07
906 1 0.00
908 78 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
GCGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAAACTT
GGTAATCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
AAACCTAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCGACGATGGTGCCCC
AGTAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCG
ATCCGATCTTAGACTGGGAATGAACTCCTTGATATACCTAAGTCATCCCGTAAAACGAGCGTGCG
GGCGCTCAGCCTCCAGAGGGGTGGGATGCGCAAGCCAAGGATCGGTCGGTCCCCCTCTACTGTAT
CGATCCTGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCAACGAAACGAGCGGGCGGGCGG
Found at i:15437203 original size:26 final size:26
Alignment explanation
Indices: 15437174--15437226 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15437164 CTGATCCGAT
15437174 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15437200 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15437226 C
1 C
15437227 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15438950 original size:26 final size:26
Alignment explanation
Indices: 15438909--15438961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15438899 TTGGTCTGAT
15438909 CTTAGACTCGGGATGAACTCCATATG
1 CTTAGACTCGGGATGAACTCCATATG
* *
15438935 CTTAGACT-GGGAATGATCTCCGTATG
1 CTTAGACTCGGG-ATGAACTCCATATG
15438961 C
1 C
15438962 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGGATGAACTCCATATG
Found at i:15439844 original size:26 final size:26
Alignment explanation
Indices: 15439814--15439866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15439804 CCATTCCAAT
15439814 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15439840 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
15439866 C
1 C
15439867 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15440732 original size:26 final size:26
Alignment explanation
Indices: 15440703--15440755 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15440693 CCGGTCCAAT
*
15440703 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15440729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15440755 C
1 C
15440756 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15440846 original size:889 final size:889
Alignment explanation
Indices: 15438187--15443822 Score: 7116
Period size: 874 Copynumber: 6.4 Consensus size: 889
15438177 CTTGCTGCCG
** * *
15438187 CAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGCCGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * * * **
15438252 ACGAGCGGGCGAGCTGGTGGGCACTAAGCCGGTAAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
15438317 TACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* * *
15438382 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCGTTCTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
15438447 ATTTTTCA-TGATTTTTGAAAC-TTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGTAGGAGTT
261 ATTTTTCACT-ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
15438510 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTA
325 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15438575 AAAACTC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTA
390 AAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
15438639 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
15438704 TTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
519 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
15438768 CACCCCCCCGA-C--C-G---CCCAATCGCCGGAACC-CCA-ATGTCGCCGGCTAGGTTCTCCGG
584 CACCCCCCCGATCGTCGGAACCCCAAT-GCC-G--CCGTCAGGT-TCTCCGGC--GATGCTCCGA
* * * * * *
15438824 CGATGGTGCCCCGATGAAAAAAAATGCGACACCAACACATGCCCGAGCGCAGCATGTGCTGTCGC
642 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC
** * *
15438889 AACCCTCGGTTTGGTCTGATCTTAGACTCGGG-ATGAACTCCATATGCTTAGACTGGGAATGATC
707 AACCCTCGGTCCGGTCCGATCTTAGACT-GGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * *
15438953 TCCGTATGCCTAAGTCAACCCACAAAAATGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGTGGGA
771 TCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGA
* * * ** * ** *
15439018 TGCGTAAGCCGGGGATCGGTCGGGGCCATCTTTGCACGCTGTCGATCCTACTACCA
835 TGCGCAAGCTGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
** ** *
15439074 CAACCCTCGGTCTGGTCTGATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * * * *
15439139 ACGAGCGGGCGGGCTGGCGGGCGGGCATTACGTCGGTCAGAGAGACGGGATGCACAAGCCGTGAA
66 ACGAGCGGGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
15439204 TCAATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTTTAGCGTGCCAATGCCATTTTTAT
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATTTTTAT
* *
15439269 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGACTCGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
15439334 TTTCTATTTTTCA-TGATTTTAGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
256 TTTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
15439398 GAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAACATTC
320 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
15439463 AGCTAAAAACTCGGAA-TGTGCAAGATTTTGTAACCATTTGAAAAAAGTGT-CCTATTTCAGACA
385 AGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
15439526 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
15439591 CAGGTTTGATGAGGGAT-AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
514 GAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
**
15439655 TGCGCACACGCCCCCGGCCTCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
578 TGCGCACA------C--CC-CCCCGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGGCG
* * * * *
15439720 ATGCTCCGACGATGGTGCCCCGACAAAGAAAATTACGGTACCAACACATGCCTGAGCCTAGCATG
633 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
** *
15439785 TGCTGCCGCAACCCTCGGTCCATTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
698 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
** * *
15439850 GAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCCGAGG
763 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
** * * **
15439915 GGCGGGATGCGCTTG-TCGGGGATCGATCGGGTCCCCCTCTGCGTGCTTCCGATCCTGCTGTCA
828 GGCGGGATGCGCAAGCT-GGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
* * * * ** *
15439978 CAACCCTCGGTCTAGTCTAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCAACAAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * *
15440043 ACGAGCGGGCGGGCGGGCGGGCACTACGCCTGCCAGAGAGATGGGATACGCAAGCCGTGG-TCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
15440107 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* * *
15440172 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTTAGGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
15440237 ATTTTTAACTATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAATTTT
261 ATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
15440302 TGGCCCAAAACTTGTTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
326 TGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
15440366 AAAACTCGAAGTGTACAAGATTTTGTGACCTTTTGAGAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
15440431 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** * *
15440496 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTATGATCACCCATCACACATCATGTGCGCAC
520 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
*
15440561 A-CCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGT
585 ACCCCCCCGATCGTCGGAACCCCAATGCCGCCG-TCAGGTTCTCCGGCGATGCTCCGACGATGGT
** ** * ** *
15440625 GCCTTGGTGACGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAAACCTC
649 GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
15440690 GGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
714 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* ** * *
15440755 CCCAAGTCAACCCACGAAACGAGCG-GACGGGTGCTCAGCTAGCCAGAGGGGCAGGAAGCGCAAG
779 CCTAAGTCAACCCACGAAACGAGCGTG-CGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
*** * *
15440819 CTGGGGATCAGTCAAATCCCCCTCTGCGTGCTGCCAATCCTGCTACCA
843 CTGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
* *
15440867 CAACCCTCGGTCCAGTCTGATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* ** * *
15440932 ACGAGCAGGCGGGCGGGTTGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
** *
15440997 TAGGGTGGGTAGGTGGGTTTAGGCACATGATCATATTTCTTCATGCCAATGCCA-TTTTATGGCT
131 TAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
*
15441061 TGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** * * * * * *
15441126 TATTTTTAACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTAAAAAATTTTTCGGATGGAGAT
260 TATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
15441191 TTGGCCCCAAACATGGTAGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15441256 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
15441321 TGGCTACTGGCAGCAAACCTGTAAAATATGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * *
15441386 TGATGTGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACACATCACACATCATGTGCG--C
520 TGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** *
15441449 ACCCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGG---T-------T-CTCCGACGATGGT
585 ACCCCCCCGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGGCGATGCTCCGACGATGGT
** * *
15441503 GCCCCGGTGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATATGCTGCCGCAACCCTC
649 GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
15441568 GGTCCGATCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
714 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
*
15441633 ACTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
779 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * *
15441698 CGAGCATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCG
844 TGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
*
15441745 CAACCCTCGGTCCAGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * *
15441810 ACGA----ACGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
15441871 TAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
*
15441936 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * * *
15442001 ATTTTTCACGATTTTGGAAACTTTTTGCGG-TCCAGGAATTTTTAAAATTTTTTTGGATGGAGTT
261 ATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
* *
15442065 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCTC-AAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
15442129 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTTAGACACTTTA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTA
* *
15442194 ATGCCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
15442259 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATTTGCACATCATGTGCGC
519 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGC
*
15442323 ACACCCCCCAGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
583 ACA-----C--CCCCC-CGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGGCGATGCTC
* * * * * * * *
15442388 CTACGATGGTGCCCTGGCAAAGAAAAATGCGGCACCAACACATGTCCAAGCCCAGCATGTGCTGT
639 CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* * *
15442453 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGCGAATGAACTTCATATGCTTAGACTGGGAATGA
704 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
* * * * * * *
15442518 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGGGTGCAGCTGCTCAGTCGGGCTAGAGGGGCAG
769 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CCGGCCAGAGGGGCGG
* * ** * *
15442583 GATGCGCAAG-TCGGGGATCGGCCAGGTCCCCCTCTATGTGCTGCTGATCCTACTACCG
833 GATGCGCAAGCT-GGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
** * * * * * * *
15442641 TGACCCTCGATCC-GATCAGATTTTAGTCTGGGAATGAAGTCCGTATGCCTATGCCAACCGACGA
1 CAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
15442705 AACGA----GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * **** * *
15442766 ATAGGGTGGTAGGTGGGTTTAGGCACGTCTACATATTTCTGTGCGCCAATGCCATTTTAATGGCC
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
15442831 TATAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * * **
15442896 TATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GCATTTTTCT-AAATTTTTTTGGAAGGTT
260 TATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGAG-ATTTTT-TAAAATTTTTTCGGAAGGAG
** * * *
15442959 TTTTGATCCCAAACTTTGTAGACATGATCCTTGTATTTTTTTTGGCATGCCCAAAAAAATTCAGC
323 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
15443024 TAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTT
* * ** * *
15443089 TAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCCTTAAATGGGAGTGAGTTCTTGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
15443154 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
517 GTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
15443219 CACACCGCTCGGCCCCCCCAATC-TCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGC
582 CACA--------CCCCCCCGATCGT-CGGAACCCCAATGCCGCC-GTCAGGTTCTCCGGCGATGC
*
15443283 TCCGACGATGGTGCCCCGACGACGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCT
637 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCT
* * *
15443348 GTCGTAACCCT---T---G---G-TC-----C--GG--T---CT-GA-A--CTTAGACTGGGAAT
702 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
* ** ** *
15443387 GAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTATGGGTGCTCAATCAGCCAGAGGGGCG
767 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCG
* * * * * ** *
15443452 GGATGCGCAAGCTGGGGATCGGCTGGGTCCCCCTCTACATGCTGTCGATCCTATTGGCG
832 GGATGCGCAAGCTGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
* * * * *
15443511 CAACCCTCGATCC-GATCCGATCTTAGACTGGGGATGAACTCCATATGCCTAAGCCAACTGATGA
1 CAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
* * * * * **
15443575 AACGAGCGGGCGGACGGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCACACA-ATGTGGATC
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA-AGCCGTGGATC
* * *
15443639 AATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
15443704 TTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
15443769 CTATTTTTCA-TGATTTTTGAAACTTTTAGCGGTTCGGGATTTTTTAAAATTTTT
259 CTATTTTTCACT-ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
15443823 GTTGGTATGC
Statistics
Matches: 4191, Mismatches: 462, Indels: 205
0.86 0.10 0.04
Matches are distributed among these distances:
869 2 0.00
870 113 0.03
871 57 0.01
873 98 0.02
874 577 0.14
875 4 0.00
876 2 0.00
877 1 0.00
878 288 0.07
879 2 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 5 0.00
884 29 0.01
886 1 0.00
887 71 0.02
888 5 0.00
889 397 0.09
890 376 0.09
891 127 0.03
892 202 0.05
893 182 0.04
894 3 0.00
895 164 0.04
896 401 0.10
897 294 0.07
898 243 0.06
899 178 0.04
900 49 0.01
901 2 0.00
902 7 0.00
903 2 0.00
904 147 0.04
905 138 0.03
906 1 0.00
907 10 0.00
908 4 0.00
909 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGATCGTCGGAACCCCAATGCCGCCGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
CCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTG
GGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCA
Found at i:15441611 original size:26 final size:26
Alignment explanation
Indices: 15441582--15441632 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15441572 CGATCTGATA
15441582 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15441608 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15441633 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15444953 original size:26 final size:26
Alignment explanation
Indices: 15444899--15444975 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15444889 GTTGACTTAG
*
15444899 GCATACGGAGTTCATT-CTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15444924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15444950 GCATACGGAGTTCATTCCCA-TCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15444975 G
1 G
15444976 ATCGGACCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 22 0.44
26 28 0.56
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15445865 original size:26 final size:26
Alignment explanation
Indices: 15445834--15445889 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
15445824 TTGGTTGGCT
15445834 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15445860 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15445886 TAAG
1 TAAG
15445890 ATCCGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15448136 original size:907 final size:902
Alignment explanation
Indices: 15444924--15450707 Score: 7863
Period size: 907 Copynumber: 6.4 Consensus size: 902
15444914 TCTAGTCTAA
15444924 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-TCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
** * *
15444988 CGAGGGTTGCGGCAGCACATGCTGGGCTCGACCATGTGTTGGTGTCGCATTTTTCTTCGTTGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
15445053 CACCATTGCCTGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGAG
131 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-AGGGGG
* * * *
15445118 GCCGGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACTCGGCCCTTATATTGGCCCCC
195 GCC--AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
15445183 TATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
15445248 TGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
323 TGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * **
15445312 CACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGA
387 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * **
15445377 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
452 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
*
15445442 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATT
517 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
15445507 GTATGAATTTACAAGCGATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACTCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCA
* *
15445572 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGC
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-
* * * *
15445637 CCGTCTGCCTGCCTGCCCGCTTGTTTCATCGGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCT
710 CC--C-GCCT--C--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
15445702 AAGATCGGACAAAACTGAGGGTTAC-GACAGCAGGATCGGCAGCACGCAGATGGGGACTCGACCG
768 AAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTG
* * * ** * *
15445766 ATCCTCGACTTGCGCATCCCGCCCCTCTAGCTAGCTGAGCACCTGCACGCTCGTTTCATTGGTTG
832 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
* *
15445831 GCTTAA
897 ACTTAG
*
15445837 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * ***
15445902 TGAGGGTTACGGCAGCACATGCGGGGCTCGGGCATTTGTTGGTGCCGTATTTTTCTTAACCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
** * *
15445967 CACCATCATCAGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
131 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG
* * *
15446031 CCAGGGGCTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
15446096 CCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
261 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
15446161 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15446226 TCGAGTTTTTAGCTGAATTTTTTTGTGCACGCC-AAAAAAATACAAGGATCATGTGTACCAAGTT
391 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
** * * * *
15446290 TGGGGTGAAAACTCCTTCCGAAAAAATTTAAAAAAATTCTGAACCACAAAAAGTTTAAAAAATCT
456 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
*
15446355 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAT
521 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
15446420 GAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAGCCCACCTA
586 GAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCACCTA
** * * * *
15446485 CCACGGTATCGATCCACGGCTTGCGCATCCCATCTTTCTGGCTGACGTAGTGCCCGCCTGCCCGC
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* ** *
15446550 C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGATC
715 CTC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
15446614 AAACCCAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGACCCG-GTCGATCCCCGGCTT
779 AGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTT
* * * * * * * *
15446678 TCGCTTCTCGCCCCTTTGGTCGACTGAGCACCCGCACTCTCGTTTCGTGGGTTGACTTAG
843 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
15446738 GCATACAGAGTTCATTTCCAGCCTAAGCATATGGAGTTCATTCCCAGTATAAGATCGAACC-GAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
* * * * *
15446802 CTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTTTTTGTCGGG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
15446867 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGTGGTTCCGACAATCAGGGGG
130 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGG
* *
15446932 GCCAAGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
15446997 TCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15447062 CCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACAG
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15447127 TTTGAGTTTTTAGCTGAATTTTTTTTTGCATG-CAAACAAAAATACAAGGATCACGTCTACCAAG
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAG
* * *
15447191 TATGGGGCCAAAATTCCTTCCTAAAAAATTCT-AAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
454 TTTGGGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAA
*
15447255 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
15447320 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCAT
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCAC
* *
15447385 CTACCACGCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
15447450 CGTCCGTCCGACCGCTCATTTCGTCGGTTGGCTTAGGTATACGGAGTTCATACCCAGTCTAAGAT
712 CG-CC-TCC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * *
15447515 CAGACCAGACCGAGGGTTATAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCC
773 CAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCC
* * * * * *
15447580 GGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAACACCCGCACGCTCATTCCATGGTTTGACTTAG
838 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
15447645 GTATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15447710 CGAGGGTTGCGGTAGCACATGCTAGGATCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * * * *
15447775 CATCGTCG-CGGAAGCATCACCGGAGAACCTGACTGGCGACATTGGGGTTCCGGCGATCGGGGGG
131 CACCATCGCCGG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGG
* * *
15447839 GCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCT
195 GCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15447904 ACCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15447969 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
15448034 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* *
15448099 TTTGGGGCCAAAACTCCTTTCGAAAAAA-TTAAAAAAAT-CTCGAACCGCAAAAGGTTTCAAAAA
454 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAA
*
15448162 TCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
518 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
15448227 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTAAACCCAC
* * *
15448292 CTACCACCCTATCGAACCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGT----GCCCGCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
15448353 CGCCT----GCTCGTTTCATTGGTTGGCTTATGCATACAGAGTTCATTTCTAGTCTAAGATCAGA
712 CGCCTCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
15448414 TCAGACCAAGAGTTGCAGCAGCAGGATCAGCAGCATGCAGAGGGGGACCCGACCGTTCCCCGGCT
777 CCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCT
* * * *
15448479 TGCGCATCCCGCCCCTCTGGCTGGCTGAGCACTCGCACGCTCGTTTCGTGGGTTGCCTTAG
842 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
15448540 GCATACGGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAATCTAAGATCAGACC-GAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
* * * *
15448604 CCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCAGG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** * ** * *
15448669 GCACCGTCGTCGGTGCATCACCGAAGAGGCTGACCGGCGGCATTGGGGCTCTGACGATCAGGGGG
130 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGG
* * * *
15448734 GCCAGGGGGTGTCCGCTCATGATGTACGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTA
195 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15448799 TCCCTTATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15448864 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15448929 TTCGAGTTTTTAGCTGAA-ATTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
*
15448993 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
455 TTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* *
15449058 GTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTA
520 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
15449123 TGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATACGAAGATGTGCTTAAACCCACC
585 TGAATTTACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGTGCCTAAACCCACC
* * * * ** *
15449187 TACCACCCTATCGATTCACGGCTTGCGCATCCCATCTCTCTGGTCGACATAGT----ATCCACCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * *
15449248 G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAATATCGGAC
713 GCCTCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * ** *
15449309 CAGA-AGAGGGTTGTAGCAGTAGCATCGGTAGCACACAGAAAGGGACCCGACTGATCCCCGACTT
778 CAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTT
* * * * * *
15449373 GCGCATCCC-CCCCTCTGGTCGGTTGAGCGCCCGCACGTTCGTTTCACGGGTTGACCTAG
843 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
15449432 GCATACGAAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15449497 CGAGGGTTGTGGCAGCACATGCTGGGCT-GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
15449561 CACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGTGGCATTAGGGTTCCTACGAT-AGAGGGG
131 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAG-GGGG
*
15449625 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTA
195 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * * *
15449690 TCCCTCATCAAACCTTAAGAACTCTCACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTA
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15449755 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15449820 TTCGAGTATTTACCTGAATTTTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
390 TTCGAGTTTTTAGCTGAA---TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * ** * **
15449885 AGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTATAAAAAATCCTGAACCATATAAAGTTTTGA
452 AGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTA-AAAAAATCCTGAACCGCAAAAAGTTTCAA
* *
15449950 AAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
515 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
15450015 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATAAAGATGTGCCTAACC
580 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGTGCCTAAAC
* * *
15450079 CCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
643 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15450144 CACCCACC-CACCCGCTCGTTTCGTCGGTTGGCTTAGGGATACAGAGTTCATTCCCAGTCTAAGG
708 CGCCCGCCTC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * **
15450208 TCAGATCAGACTGAGGGTTGCGGTAGCAGGATCGGCATCACGTAGAGGGGGACCCGGGTGATCCC
772 TCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCC
* * * ** * * *
15450273 CGGCTTACGCATCCCGCCCCTTTGGCTGGCTGAGTGCTCGTACACTCGTTTCATGGGTTGACTTA
837 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
15450338 G
902 G
* * * * *
15450339 GCATATGGAGTTCATTCCCAATCTAAGCTTGCGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-
* * * * *
15450404 CCGAGGGTAGCTGCAGCACATGCCGGGCTCGGGCATGTGCTGGTG--GCATATTT-TTC-T----
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
* * *
15450461 TCACCA--G--GGACCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCC-AGCGATCAGGGG
130 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCAGGGG
* * *
15450521 GGCCGGGGGGGTGTGCGCACGTGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCC
194 GGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
15450586 TATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15450651 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
15450708 GTTTTGAAAA
Statistics
Matches: 4318, Mismatches: 500, Indels: 121
0.87 0.10 0.02
Matches are distributed among these distances:
890 2 0.00
891 277 0.06
892 124 0.03
893 123 0.03
894 456 0.11
895 388 0.09
896 7 0.00
897 247 0.06
898 172 0.04
899 1 0.00
900 1 0.00
901 324 0.08
902 223 0.05
903 272 0.06
904 3 0.00
905 62 0.01
906 64 0.01
907 621 0.14
908 286 0.07
909 276 0.06
910 213 0.05
911 1 0.00
912 7 0.00
913 46 0.01
914 122 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG
CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCAGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
TCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:15448579 original size:26 final size:26
Alignment explanation
Indices: 15448540--15448592 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15448530 GTTGCCTTAG
* *
15448540 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* *
15448566 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
15448592 G
1 G
15448593 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:15449461 original size:26 final size:26
Alignment explanation
Indices: 15449432--15449484 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15449422 GTTGACCTAG
15449432 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
* *
15449458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
15449484 G
1 G
15449485 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:15452014 original size:26 final size:26
Alignment explanation
Indices: 15451984--15452034 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15451974 TTGACTTAGG
*
15451984 CATATGGAGTTCATTCCTAGTCTAAC
1 CATATGGAGTTCATTCCCAGTCTAAC
15452010 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATTCCCAGTCTAA
15452035 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAC
Found at i:15452917 original size:26 final size:26
Alignment explanation
Indices: 15452880--15452932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15452870 GTTGAGTTAG
* * *
15452880 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15452906 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15452932 G
1 G
15452933 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15453406 original size:895 final size:890
Alignment explanation
Indices: 15451101--15457331 Score: 7569
Period size: 863 Copynumber: 7.0 Consensus size: 890
15451091 GGTTGATTAG
* * * **
15451101 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCATGTGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-GAGCACATGCTGGG
* * ** ** * *
15451166 CTCGAGCATTTATTGGTGCCTTATTTTT-TTTCCTCGGGGCACCATCGTC-GATGCATCGTCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTT-GTCGGGGCACCATCGCCGGA-GCATCGTCGGA
* * * * *
15451229 GAACATGACCGGCGGCATAGGGGTTCCGTCGATCGGGGGGGCCAAGGCGGGGTGATGTACACACA
128 GAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC--GG-GGGGTG-TG--CGCACA
** * * *
15451294 CAATGTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
186 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
15451359 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAATGTGT
251 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
15451424 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAT
316 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** * * **
15451489 TTTTTTGTGGTTGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTTATTC
381 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** * *
15451554 TGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
446 CGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAG
**
15451619 TCGTCTTGCCATGAAACTTCATTTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAA
510 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
15451683 AATGGCATTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
575 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
15451748 GCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCACCCGTCCACTTGTTTCGTC
640 GCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG----CCCGCCCG----CTCGTTTCGTC
* * * *
15451813 GGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGAGTGAGGGTTATGGCAG
697 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTACGGTAG
* * * ** * * *
15451878 CAGGATCGGTACCATGTAGAGGGGGAGTCAACCGATCCATGGCTTGCGCATCCCACCCCTCTGGC
761 CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15451943 CGGCTGAGCGCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTA
825 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
15452008 A
890 A
* * * * *
15452009 CCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-AGCACATGCTGGG
** * * * * * * **
15452074 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGTACCATCACTGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * *
15452139 ACCTGACCGGTGGCATTGGGGTTTCGGTGATCGGGGGCGCCGACGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG-GCCG--GGGGGTGTGCGCACATGATGT
* * * *
15452204 GCGATGGGTTCCGATACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15452269 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* *
15452333 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15452398 TGTGC-TCGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAACCTCCTTCCGAA
386 TGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
15452462 AAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTAAAAACTCGTGAAAAATATAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAA-TCGTGAAAAATAGAAAATGAGTCGT
*
15452527 CTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15452592 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTC
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15452657 ACGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAGG
644 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
15452722 CATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGTAGCAGGAAT-GGCA
709 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTACGGTAGCAGG-ATCGGCA
** *
15452786 GCACACAGAGGGGGACCCGACCGATTCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
772 GCACGTAGAGGGGGACCCGACCGA-TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
15452851 CCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * *
15452906 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGGAGGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGA-GCACATGCTGGG
* * *
15452971 CTCGGGAATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15453036 ACTTGACCAACGGCATTGGGGTTCCGGCGATCGGGGTGGCCGAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTG
*
15453101 CGATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15453165 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAATGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15453230 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15453295 TGC-TCGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAACCTCCTTCCGAAAA
388 TGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15453359 AATTTTAAAAAATCTCAAACTGTAAAAAGTTTAAAAACTCGTGAAAAATATAAAATGAGTCGTCT
452 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAA-TCGTGAAAAATAGAAAATGAGTCGTCT
*
15453424 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15453489 ATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * ** *
15453554 GCATCCTATCTCTCTGGTCAGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTTGGATTA
646 GCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
15453619 GGCATACGGTGTTCGTTCCCAGTCTAAGAT---------TGAAGGTTGCGGTAGCAGGATTGGCA
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATGAGGGTTACGGTAGCAGGATCGGCA
* * * * *
15453675 GCACGTAAAGGGGGACCTGACCGATACCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGTGC
772 GCACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
15453740 CCGCACG--C---TC----GTTG-C--A-G-----GG-GTT-A-----ACT-TAG
836 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
15453769 GCATACGAAGTTTATTCCCAGTCTAATATCGGATCGGACCTAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGAGCACATGCTGGG
* * *
15453834 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15453899 ACATGACCGACAGCATTGGGGTTCCAGCAATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * * *
15453964 GATGGATACTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCAACAACTCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15454029 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
15454094 GGGACACTTTTGTGAAATGGTCACAAAATCTTGTACACTTCAAAG-TTTTAGATGAATTTTTTTA
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* * *
15454158 TGCATGCCAACAAAATTACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15454223 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCAAACCGTAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
* *
15454288 GCCATGAAGCTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15454353 TTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
15454418 CATCCTGTCTCTCTGGTCAGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTTGTCATTTGGCTTAG
647 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAG
* * * *
15454483 GCATACGGTGTTCGTTCCCAGTCTAAGAT---------TGAGGGTTGCGGTAGCAGGATTGGCAG
708 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATGAGGGTTACGGTAGCAGGATCGGCAG
* * *
15454539 CACGTAAAGGGGGACCCGACCGATACCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGTGCC
773 CACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
15454604 CGCACGCTCGTTGCG-GGG--G---T-----TA---A---C--T--TAG-----
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
15454632 GCATACGAAGTTTATTCCCAGTCTAATATCGGATCGGACCTAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGAGCACATGCTGGG
* * *
15454697 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15454762 ACCTGACCGACAGCATTGGGGTTCCAGCAATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
15454827 GATGGATGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCAAGAACTCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15454892 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15454957 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15455022 GCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAA
* * * * *
15455086 ATTTTTAAAAAATCCTAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
453 A-TTTTAAAAAATCCCAAACCGTAAAAAG-TTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
*
15455151 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15455216 ATTGGCACACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTCC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15455281 ACATCCGGTCTCTCTCGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTGG
646 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG-CT-----C--GTTTCGTCGGTTGG
* * * * ** * *
15455346 CTGAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGTGGCAGCTGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGGTTACGGTAGCAGGAT
* * * * * *
15455411 CAGCAGCACGTAGAGTGGGACCCGGCCGATCCTCGACTTGCACATCCCGCCCCTCTGGCCGGCCG
767 CGGCAGCACGTAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
15455476 AGCGCCCGCACGCTCGTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* **
15455535 G-AT-C--AG---------A--C------C-G----GACCGAGGGTTACAATAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGAGCACATGCTGGG
* * * * * *
15455574 CTTGGGCATGTGCTGGTGCAGCATTTTT-TTTCGTCGAGGCAGCATCGTCGGAGCATCGTCAGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTT-GTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
15455638 GACCTAACCG-CGGCATTAGGGTTTTTCAGTGATCGGGGGG-C-GGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATT-GGG-GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
15455700 GCAATGGGTGCTGGTACTTAGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTC
192 GCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15455765 ACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
15455830 AAGGGGACATTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTACCTAAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15455895 GGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * * * * *
15455960 AAATTTTAAAAAATCCCGAACCATGAACAGTTTCGACAATTGTCAAAAATAGAAAACGAGTCGCC
451 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAGTCGTC
*
15456025 TTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** * *
15456090 CACTGGCATGGAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
15456155 CGCATCCAGTCTCTATGGTCGATGTAGTGCCCGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTT
645 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTT
* * * *
15456220 AGGCATAAGGAGTTCACTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGTAGCAGGATCAG
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGGTTACGGTAGCAGGATCGG
** * * * * *
15456285 CAGCACACAGAGGGGGACCCAACCAATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCA
770 CAGCACGTAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
15456350 ACCACACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAA
* * * * ** **
15456406 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAACAGCACATGCTACG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGAGCACATGCTGGG
* * * *
15456471 CTCGGGCATGTGCTGGTGTCGTATTTTT-TTTCGTCGGGGCACCATCACCGGAGCATCGTACGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTT-GTCGGGGCACCATCGCCGGAGCATCGT-CGGA
* * * ***
15456535 G-ACCTGACCGACGGCATTGAGGTTTCGACGATCGAGGGGAATGGGGGGTGTGCGCACATGATGT
128 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGT
* *
15456599 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15456664 CAACCCCTTAAGGAGCATTTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15456729 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
15456794 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15456859 AATTTGAAAAAATCCCAAACCGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAATGAGTCATCT
452 AATTTTAAAAAATCCCAAACCGTAAAAAG-TTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
*
15456924 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
15456989 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15457054 GCATCCCGTCTCTCTGGCCGGCATAGTGTCTGCCCGCCCGCTCGCTCGTTTCGTCGGTCGGCTTA
646 GCATCCCGTCTCTCTGGTCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15457119 GGCATACGTAGTTCATTCCCAATCTAAGATTGGGCCAGACTGAGGGTTACGATAGCAGGATCGAC
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTACGGTAGCAGGATCGGC
* * * * * *
15457184 AACATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCGTCTGGTCGGCTGAGCG
771 AGCACGTAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
15457249 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
*
15457305 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
15457332 CATACGAAGT
Statistics
Matches: 4714, Mismatches: 464, Indels: 299
0.86 0.08 0.05
Matches are distributed among these distances:
859 13 0.00
861 2 0.00
862 49 0.01
863 1133 0.24
864 232 0.05
865 4 0.00
866 1 0.00
867 1 0.00
868 43 0.01
869 2 0.00
870 45 0.01
871 132 0.03
872 5 0.00
873 2 0.00
874 3 0.00
875 242 0.05
876 228 0.05
877 100 0.02
878 101 0.02
879 2 0.00
880 5 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 3 0.00
886 1 0.00
887 1 0.00
888 6 0.00
889 82 0.02
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 433 0.09
896 60 0.01
897 409 0.09
898 534 0.11
899 204 0.04
900 2 0.00
901 8 0.00
902 12 0.00
903 8 0.00
904 336 0.07
905 112 0.02
906 3 0.00
907 11 0.00
908 132 0.03
909 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCAAACCGTAAAAAGTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGATGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGA
GGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Done.