Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 98 of 190
Found at i:15454571 original size:863 final size:862
Alignment explanation
Indices: 15452906--15466733 Score: 15167
Period size: 863 Copynumber: 15.9 Consensus size: 862
15452896 CCTAGTCTAA
* * * * *
15452906 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTAC-GGAGGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTA-GCACATGCTAG
* * * * *
15452970 GCTCGGGAATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
15453035 AACTTGACCAACGGCATTGGGGTTCCGGCGATCGGGGTGGCCGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
*
15453100 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15453164 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAATGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15453229 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTT
* * * *
15453294 GTGC-TCGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAACCTCCTTCCGAAA
388 GTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * *
15453358 AAATTTTAAAAAATCTCAAACTGTAAAAAGTTT-AAAAACTCGTGAAAAATATAAAATGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCGT
*
15453422 CTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
15453487 GCATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * ** *
15453552 GCGCATCCTATCTCTCTGGTCAGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTTGGAT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
15453617 TAGGCATACGGTGTTCGTTCCCAGTCTAAGAT-TGAAGGTTGCGGTAGCAGGATTGGCAGCACGT
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATATGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* * * *
15453681 AAAGGGGGACCTGACCGATACCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCAC
776 AGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC
* *
15453746 GCTCGTTGCAG-GGGTTAACTTAG
840 GCTCGTTTC-GTGGGTTGACTTAG
* * * * *
15453769 GCATACGAAGTTTATTCCCAGTCTAATATCGGATCGGACCTAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
*
15453834 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15453899 ACATGACCGACAGCATTGGGGTTCC-AGCAATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * * *
15453963 CGATGGATACTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCAACAACTCAT
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15454028 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15454093 GGGGACACTTTTGTGAAATGGTCACAAAATCTTGTACACTTCAAAGTTTTAGATGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTAGCTGAATTTTTTTG
* *
15454158 TGCATGCCAACAAAATTACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
15454223 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15454288 GCCATGAAGCTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
15454353 TTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * **
15454418 CATCCTGTCTCTCTGGTCAGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTTGTCATTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15454483 GCATACGGTGTTCGTTCCCAGTCTAAGAT-TGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAAA
714 GCATACGGAGTTCATTCCCAGTCTAAGATATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA
*
15454547 GGGGGACCCGACCGATACCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCT
779 GGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCT
* * *
15454612 CGTTGCGGGGGTTAACTTAG
843 CGTTTCGTGGGTTGACTTAG
* * * * *
15454632 GCATACGAAGTTTATTCCCAGTCTAATATCGGATCGGACCTAGGGTTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
*
15454697 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15454762 ACCTGACCGACAGCATTGGGGTTCC-AGCAATCGGGGGGGCCGGAGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
15454826 CGATGGATGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCAAGAACTCAT
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15454891 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15454956 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTAGCTGAATTTTTTTG
* * *
15455021 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTCGAAAA
** * ** *
15455085 AATTTTTAAAAAATCCTAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15455150 TTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
15455215 CATTGGCACACAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTC
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15455280 CACATCCGGTCTCTCTCGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTG
* * * * *
15455345 GCTGAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGTGGCAGCTGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCT---A--AGAT---AT-GAGGGTTGCGGTAGCAGGA
* * * * * * * *
15455410 TCAGCAGCACGTAGAGTGGGACCCGGCCGATCCTCGACTTGCACATCCCGCCCCTCTGGCCGGCC
764 TCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
15455475 GAGCGCCCGCACGCTCGTTT-GTGGGTTGACTTAG
828 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15455509 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
* * * * * * * * *
15455574 CTTGGGCATGTGCTGGTGCAGCATTTTTTTTCGTCGAGGCAGCATCGTCGGAGCATCGTCAGAGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15455639 ACCTAACCG-CGGCATTAGGGTTTTTC-AGTGATC-GGGGGG-C-GGGGGTGTGCGCACATGATG
131 ACCTGACCGACGGCATT-GGG-GTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
15455699 TGCAATGGGTGCTGGTACTTAGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACT
193 TGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15455764 CACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
15455829 AAAGGGGACATTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTACCTAAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTT
* * * * *
15455894 TGGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * * * * *
15455959 AAAATTTTAAAAAATCCCGAACCATGAACAGTTTCGACAATTGTCAAAAATAGAAAACGAGTCGC
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15456024 CTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15456089 GCACTGGCATGGAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * *
15456154 GCGCATCCAGTCTCTATGGTCGATGTAGTGCCCGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15456219 TAGGCATAAGGAGTTCACTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGTAGCAGGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-------AT-GAGGGTTGCGGTAGCAGGATCG
* * * * * *
15456284 GCAGCACACAGAGGGGGACCCAACCAATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
767 GCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
** * *
15456349 AACCACACGCTCGATTCGTGGGTTGACTTAG
832 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15456380 GCATACGGAGTTCATTCCCTA-TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCATACGGAGTTCATTCCC-AGTCTAAG-AT-CG--G---------A-TC---G----GACC-G-
** * * * * *
15456444 CCAAGGGTTACAACAGCACATGCTACGCTCGGGCATGTGCTGGTGTCGTATTTTTTTTCGTCGGG
42 ---AGGGTTACAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * *
15456509 GCACCATCACCGGAGCATCGTACGAAG-ACCTGACCGACGGCATTGAGGTTTCGACGATCGAGGG
104 GCACCATCGCCGGAGCATCGT-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
*** * *
15456573 GAATGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCT
168 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15456638 ATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAGGAGCATTTGATATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15456703 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
15456768 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
363 CTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
15456833 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCCCAAACCGCAAAAAGATTCAAAAAT
427 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
15456898 CGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
15456963 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
15457028 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGTCTGCCCGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
15457093 GCTCGCTCGTTTCGTCGGTCGGCTTAGGCATACGTAGTTCATTCCCAATCTAAGATTGGGCCAGA
687 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-------A
* * * * * *
15457158 CTGAGGGTTACGATAGCAGGATCGACAACATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGC
744 -TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGC
*
15457223 ATCCCGCCCGTCTGG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
807 ATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15457279 GCATACGGAGTTCATTCCCAGTCTAAG--C--AT---A-CG-GAGTT-CA-T-TCCCA-GTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATG-CTAG
* * * * * * * *
15457331 GCATACGAAGTTCAT-TTCATCGG-G--GCA----CCATCACTGGGGAACC-T-GACCGGTGGCA
65 GC-T-CG--G-GCATGTGC-T-GGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-CCGG-AGCA
* ** * * * * * ** * **
15457386 T--T-GGGGTTCCGGCAATCAGGAGGGC-TAGGGGGTGTGCGCAC-AT--GATGTG-CGATGGGT
121 TCGTCGGAGAACCTG--A-C-CGACGGCAT-TGGGGT-TCCG-ACGATCGGGGGGGCCGGGGGGT
* * ** ** * *** *
15457443 GCTG-GTAC-T--TG-GC-------CCTTATA-TTGGCCC-CCTA-T--CCCTC-ATCAAACCTC
179 G-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *** * *
15457490 AAGAACTC-ATACCCCCTTAAAGAGCATT--TGAG-A--T-----TTTACAGGTTTGCTGCCAGT
243 AA-ACCTCGAGA---ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15457544 AGCCATTAAAGTG-CATGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
304 AGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
15457608 AGTTTCTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
368 AGTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
15457673 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAATAGTTTGGAAAATCATGA
432 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
15457738 AAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATAAA
497 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15457803 TTTACCAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCA
562 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
15457868 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCTGCCCG
627 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCG
* * *
15457933 GCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
688 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT---A-T----
* * * * *
15457998 GAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCAT
745 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCAT
* * *
15458063 CCCGCCCCTCTAG-TCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAG
809 CCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15458117 GCATACAGAGTTCATTCCCAGTCTAAGCAT---AT--G---GA--GTT-CA-T-TC-C---C-AG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAG
* ** * * ** *
15458164 TCT-AAGCA--TAC--G-G-AG--TTCAT-TTCGTCGGGGCACCAT--------CA-C--CGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
** * * *
15458208 AACCTGACCGGTGGCATTGGGGTTCCGACTATCAGGAGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15458273 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15458338 CACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15458403 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTGAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-AGCTGAATTTTTTT
*
15458468 GTGCATGCCAACAAAAATACAAGGATCACGTCTA--AGAGTTTGGGGCCAAAAC-CTTTTCTGAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTTC-GAA
* *
15458530 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
15458595 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
15458660 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATTGATCCATGACTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
15458725 GCGCATCCCGTCTCTCTGGCCGGAGTAGT----GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15458786 TAGGCATACAGAGTTCATTCCCAGT-TGAAAAATCAGACCGGACTGAGGGTTGCGATAGCAAGAT
711 TAGGCATACGGAGTTCATTCCCAGTCT-----A--AGA---TA-TGAGGGTTGCGGTAGCAGGAT
* * * * * * *
15458850 CGGCAGCACGGAAAGGGGGACCCGATCGATCCTCAGCTTACGCATCCTGCCCTTCTGG-TCGGCT
765 CGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCT-GGCT
*
15458914 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
828 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15458949 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
* * * * *
15459014 CTCGGGCATTTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTAC-AAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGT-CGGAG
* *
15459078 AACCTGA-CGACGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15459142 TGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15459207 AACCCCTTAAGGAGCATTTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15459272 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTCAGGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTA-GCTGAATTTTTTTG
*
15459337 TGCATGCCAA-AAAAACTACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCC-TTCTAAAA
389 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* ** *
15459399 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTTAAAATCGTGAAAAAGAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15459464 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15459529 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15459594 TGCATCCCGTCTCTCTGGCCGGCATAGTGTCTGCCCGCCCGCTCGCTCGTTTCGTCGGTCGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
15459659 AGGCATACAGAGTTCATTCCCAATCTAAGATTGGGCCAGACCGAGGGTTACGATAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGA-T-------A-TGAGGGTTGCGGTAGCAGGATCGG
* * * * *
15459724 CAACATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGC
768 CAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
15459789 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
832 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15459820 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A-TC---G---G-A-C---C
* * * * * * **
15459885 TGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATCTGTTGGTGTCGCATTTTTCTTTGCTAGGG
41 -GAGGGTTACAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
** * * * *
15459950 CACCATCGCCGGAGCATCACCGAAGAATCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGG
105 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
15460015 TCGGGGGGTGTGCG---ATG-TGTGC--------C-GATACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15460067 CCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** * * *
15460132 TTGTAGCCGTTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTATACA
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15460196 TCGATTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
365 TCGA-GTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
15460261 TGGGGCCAAAACTCC-TTCCATAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATC
429 TGGGGCCAAAACTCCTTTCGA-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
15460325 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCACGTGATGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
15460390 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
15460455 ACCACCCAATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGTCTGCCCGCCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
15460520 CTCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGGCCAGAC
688 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-------A-
* * * * * * *
15460585 CGAGGGTTACGATAGCAGGATCGACAACATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCA
744 TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCA
* *
15460650 TCCCGCCCGTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
808 TCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15460705 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GA-C--------C
* * * * * * **
15460770 TGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATCTGTTGGTGTCGCATTTTTCTTTGCTAGGG
41 -GAGGGTTACAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
** * * * * *
15460835 CACCATCGCCGGAGCATCACCGAAGAATCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGT
105 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
15460900 TCGGGGGGTGTGCG---ATG-TGTGC--------C-GGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
15460952 CCTTCATCAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 CCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
** * *
15461017 CTTGTAGCCGTTAAAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTATAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15461081 ATCGATTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGA-GTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
15461146 TTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATC
428 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
15461211 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCACGTGATGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
15461276 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAATATGAAGATATGCCTAAACCCACC
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACC
* * * *
15461341 GACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCCTAGT----GCCCGCCT
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
15461402 GACCGTTCGTTTCATCGATTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGATTGGA
687 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT---A--AGA-T---
* * * *
15461467 ATGAGGGTTGCAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGC
743 ATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGC
* ** * *
15461532 ATCCCGCCCCTTTGG-TCGG-TCGAGAACCCGCACGTTCGTTTCGTGGGTCGACTTAG
807 ATCCCGCCCCTCTGGCT-GGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *** * *
15461588 GCATACAGAGTTCATTCCCAGTATAAGATCAGATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
* * * * * *
15461653 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCGTCGAAGCATCGACGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-CGGGGCACCATCGCCGGAGCATCGTCGGAG
*
15461717 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
15461782 GCGATGGGTGCTGGTACTTGGCCCATATATTAGCCCCCTATCCCTCGTCAAACCTCGACAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15461847 CAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTGTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15461912 TAGGGACTCTTTTTTCAATTGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTT
* * * * *
15461977 ATGCATGCCAAAAAAAATACAACGATCACGTCTACCAAATTTGGGACCAAAACTCC-TTCTG-AA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* *
15462040 AACTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15462105 TCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15462170 TATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15462235 CGCATCCCGTCTCTCCGGCCAGCGTAGTGCCCGCCCACCCGCCCGTCCGCCCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
15462300 GCTTAGGCATACGGAGTTCATTTACAGTCTAAGATCAGACCGAACAGAGGGTTGCGGCAACAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT--------A-TGAGGGTTGCGGTAGCAGGA
* * * * *
15462365 TTGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
764 TCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
* *
15462430 GAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAG
828 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15462465 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTAC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAG-TAGCACATGCTAG
* * * * * **
15462529 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGTGCACCCCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
15462594 AACCTGACCGACGGCATTGAGGTTCCGGCGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15462658 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGACCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15462723 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTTAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15462788 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTAGCTGAATTTTTTTG
* * * *
15462853 TGCATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCTAAAACT-CTTTCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAA
* * * * *
15462917 AATTTTAAAAAATCCTGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGAT-GTG
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-TCGTC
* *
15462981 TTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15463046 CATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *** * * *
15463111 CGCATCCCGTCTCTCTGGCCGGCATAGTGTTTGCCCGCCTGCCCGCTCGTTTCATCGGTCGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
15463176 AGGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCTAACTGAGGGTTGCGGTAGTAGGATCAG
712 AGGCATACGGAGTTCATTCCCAGTCT-A-A--G-A--T-A-TGAGGGTTGCGGTAGCAGGATCGG
* * * *
15463241 CAGCACGAAGAGGGGGACCC-AGCCGATCCTCGGCTTGCACATCCTGCCCCTCTGGCTAGCTGAG
768 CAGCACGCAGAGGGGGACCCGA-CCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* *** * *
15463305 CACCTTTACACTCATTTCGTGGGTTGACTTAG
831 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15463337 GCATACGGAGTTTATTCCCAATCTAAGCATACGGAGTTCAATCCCAGTCTAAGATTGGACCGGAC
1 GCATACGGAG-------------T-----T-C--A--T---TCCCAGTCTAAGATCGGATCGGAC
* * * * * * * * * * *
15463402 CGAGGGTTGCGGCAGCACATGTTGGGCTTGGGCATGTG-TAGGTGCCTCCTTTTTCTTTGTC-GA
40 CGAGGGTTACAGTAGCACATGCTAGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGCCGGG
* * * * ** * *
15463465 GCACCATCACCAGAGCATTGCCGGAGAACCTGACCGGTGGCATTGGGTTTTCGACGATCGGGGGG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
15463530 GCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
15463595 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
15463660 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
15463725 CTTCGAGTTTTTAGCTGAAGTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCAGCAAT
363 CTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
***
15463790 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAAT
427 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * *
15463855 CATGAAAAATAGAAAATGATTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGT
492 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*** * * *
15463920 ATGAATTTACAAGCCATAAAAATGGCATCAACATTCAGAAATATGAAGATGTGACTAAACCAACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
15463985 TACCACCCTATCCCG-T-CA---ATT-TG-A--CCGACT-T-TGTGCC--C-----GCACGCCCG
622 TACCACCCTAT--CGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCGGCGTAGTGCCCGCCCG
* * *
15464032 CCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
684 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT---A--
* * * * * * *
15464097 AGACCAAGGGTTACGGCAGTAGGA-CAGACAGCACGTAGAGGGGGACCCG-TCGATCCCTGGCTT
744 TG----AGGGTTGCGGTAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTT
* * * * * *
15464160 GCGCATCCTGCCCCTCTGGCCGGATGAGCACCCGCACACTCATTTCGTGGGTTGACTTAG
803 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
15464220 GCATACAGAGTTCATTCCCAGTATAAGATCGAAATC-GACCGACGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GATCGGACCGAGGGTTACAGTAGCACATGCTAG
* * * * * *
15464284 GCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
15464349 AACTTGACTGGCGACATTGGGGTTCCGACGATCGTGGGGGCCGGGGGGTGTGCGCACATGTTGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15464414 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15464479 ACCCCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15464544 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTG
* * * * * *
15464609 TGCAAGCCAACAAATATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCCTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** *
15464674 ATTTTAAGAAATATCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15464739 GCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15464804 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
15464869 CATCCCGTCTCTCTGGCCGATGTAGTGTCCGACCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
15464934 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCT-GCAGGATCGGC
714 GCATACGGAGTTCATTCCCAGTCT-A-A---GAT---A-TGAGGGTTGCGG-TAGCAGGATCGGC
** * * * * * *
15464998 AGCATACAGA-GGGGACTCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCAGGCTGAGCA
769 AGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* *
15465062 CCCGCACGCTCGTTTTGTGGTTTGACTTAG
833 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
15465092 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A---T-CG----GATCGGAC
* * * ** **
15465157 CGAGGGTTGC-GATAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCATATTTTTCTTCGTTGGG
40 CGAGGGTTACAG-TAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * *
15465221 GCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTTGGGTTCC-AGCGATCGAGGG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGG
* * * * *
15465285 GGCTGGGGGGTATGCGCCCATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCT
168 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15465350 ATCCCTCATCAAACCTCCA-AACTCACA-CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
15465413 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15465478 CTTCGAGTTTTAGCTGAATGTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGT
363 CTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
15465543 TTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAATAGTTTCAAAAATC
428 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
15465608 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTT
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*** *
15465673 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
15465738 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCCACCCACCT
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCCGCCCGCCC
* *
15465803 GCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGA
687 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-------A
* * * * * *
15465868 CTGAGGGTTGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCTGGCTGATCCTCGGCTTGCGC
744 -TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGC
* * * *
15465933 ATCCTGCCCCTCTAGCTGGCTGAACGCCCGCAGGCTCGTTTCGTGGGTTGACTTAG
807 ATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15465989 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGC-GACAGCACATGCAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAG-TAGCACATGCTAG
* * ** * * *
15466053 GCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCGCCTAGGCACCCTCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * * ** * * *
15466118 GAACCTGACAGCCGACATTAGGGTTTCGATGATCGGAAGGGCCGACGGGGGTGTGCGTATATAAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG--GGGGGTGTGCGCACATGAT
* *
15466183 GTGCAATGGGTGCTGATACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * **
15466247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACAT-CTTGTAGCCATTAAAGTGTCTG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTG
* *
15466311 AAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTT
** * *
15466376 TCGGTGCATG-C--CAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCAA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* ** *
15466438 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
15466503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * * *
15466568 GGCATTGGCACATAGAAATATGAAGACGTGCCTAAACCCA-CTACCACCCTCTCAATGCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15466632 TGCGCATCCCGTCTTTCTGGTCGGTGTAGTGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCGTT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGT
**
15466697 TGGCTTAGGCATAAAGAGTTCATTCCCAGTCTAAGAT
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15466734 CAGACTGGAC
Statistics
Matches: 11304, Mismatches: 1206, Indels: 899
0.84 0.09 0.07
Matches are distributed among these distances:
810 2 0.00
811 5 0.00
812 9 0.00
813 5 0.00
814 4 0.00
815 9 0.00
816 9 0.00
818 2 0.00
819 2 0.00
822 2 0.00
823 1 0.00
824 9 0.00
825 1 0.00
826 6 0.00
827 9 0.00
828 2 0.00
829 9 0.00
830 51 0.00
831 16 0.00
832 139 0.01
833 2 0.00
834 14 0.00
835 362 0.03
836 7 0.00
837 7 0.00
838 367 0.03
839 191 0.02
840 4 0.00
841 3 0.00
842 13 0.00
843 12 0.00
844 1 0.00
845 9 0.00
846 2 0.00
847 7 0.00
848 5 0.00
849 3 0.00
850 3 0.00
852 2 0.00
854 1 0.00
855 4 0.00
856 7 0.00
857 606 0.05
858 78 0.01
859 31 0.00
860 22 0.00
861 20 0.00
862 63 0.01
863 1176 0.10
864 237 0.02
865 8 0.00
866 15 0.00
867 15 0.00
868 499 0.04
869 108 0.01
870 246 0.02
871 490 0.04
872 495 0.04
873 249 0.02
874 60 0.01
875 643 0.06
876 470 0.04
877 444 0.04
878 99 0.01
879 10 0.00
880 6 0.00
881 6 0.00
882 6 0.00
883 245 0.02
884 177 0.02
885 800 0.07
886 325 0.03
887 77 0.01
888 9 0.00
889 1 0.00
890 4 0.00
891 10 0.00
892 12 0.00
893 4 0.00
894 8 0.00
895 292 0.03
896 205 0.02
897 321 0.03
898 849 0.08
899 538 0.05
900 5 0.00
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (862 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAG
Found at i:15456417 original size:26 final size:26
Alignment explanation
Indices: 15456380--15456432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15456370 GTTGACTTAG
*
15456380 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
15456406 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15456432 G
1 G
15456433 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15457315 original size:26 final size:26
Alignment explanation
Indices: 15457279--15457346 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
15457269 GTTGACTTAG
15457279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15457305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15457331 GCATACGAAGTTCATT
1 GCATACGGAGTTCATT
15457347 TCATCGGGGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15458147 original size:26 final size:26
Alignment explanation
Indices: 15458117--15458184 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
15458107 GTTGACTTAG
*
15458117 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15458143 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15458169 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
15458185 TCGTCGGGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15459856 original size:26 final size:26
Alignment explanation
Indices: 15459820--15459872 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15459810 GTTGACTTAG
15459820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15459846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15459872 G
1 G
15459873 ATCGAATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15460327 original size:885 final size:883
Alignment explanation
Indices: 15458949--15466760 Score: 8996
Period size: 885 Copynumber: 8.9 Consensus size: 883
15458939 GTTGACTTAG
* * * * * *
15458949 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCACATGCTGGG
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCGAATC-GA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15459014 CTCGGGCATTTGCTGGTGCTGCATTTTTCTTCG-TCGGGGCACCATCACCGGAGCATCGTA-C-A
63 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATC--ACCGG
* *
15459076 AGAACCTGA-CGACGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATG
125 AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGT--G--C--GA--
**
15459140 TGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
182 --TGAT--GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
15459205 ACAACCCCTTAAGGAGCATTTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
243 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15459270 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCG-TTTCAGGCTGAATTTTT
308 ATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTT
*
15459334 TTGTGCATGCCAA-AAAAACTACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTAA
371 TTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
** *
15459397 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTTAAAATCGTGAAAAAGAGAAAACGAGTCG
435 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15459462 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
500 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15459527 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
565 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15459592 TGTGCATCCCGTCTCTCTGGCCGGCATAGTGTCTGCCCGCCCGCTCGCTCGTTTCGTCGGTCGGC
630 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
15459657 TTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGGCCAGACCGAGGGTTACGATAGCAGGATC
695 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATC
* * *
15459722 GACAACATGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGA
760 GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
15459787 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15459846 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCGAATC-GAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15459911 CTCGGGCATCTGTTGGTGTCGCATTTTTCTTTGCTAGGGCACCATCGCCGGAGCATCACCGAAGA
63 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
15459976 ATCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGTCGGGGGGTGTGCGATG-TGTGCCGA
128 ACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGATGATGTGCCGG
* *
15460040 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGA
193 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** *
15460105 GCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCGTTAAAGTGTCTGAAATGGGGCACTTTTTT
258 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCACTTTTTT
* * * *
15460170 CAAATGGTCACAAAATCTTGTATACATCGATTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
15460235 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCATAAAAATTTAAAAAAATCT
388 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
* * * *
15460300 CAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCA
453 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
15460365 CGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
518 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
15460430 TATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGTGCATCCCGTCTCTCT
583 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
15460495 GGCCGGCATAGTGTCTGCCCGCCCGCTCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCA
648 GGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
* * * * * * *
15460560 TTCCCAATCTAAGATTGGGCCAGACCGAGGGTTACGATAGCAGGATCGACAACATGCAGAGGGGG
713 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGG
* *
15460625 ACCCGATCGATCCTCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
778 ACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
15460690 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15460731 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCGAA-TCGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15460796 CTCGGGCATCTGTTGGTGTCGCATTTTTCTTTGCTAGGGCACCATCGCCGGAGCATCACCGAAGA
63 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGA
* **
15460861 ATCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGTTCGGGGGGTGTGCGATG-TGTGCCGG
128 ACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGATGATGTGCCGG
*
15460925 TACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTTAAAG
193 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAG
** *
15460990 AGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCGTTAAAGTGTCTGAAATGGGGCACTTTTT
257 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCACTTTTT
* * * *
15461055 TCAAATGGTCACAAAATCTTGTATACATCGATTTTTTAGCTGAATTTTTTTGTGCACGCCAACAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
15461120 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATC
387 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * *
15461185 TCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTC
452 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
15461250 ACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-A
* *
15461315 AATATGAAGATATGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
15461380 TTGGCCGGCCTA--GT--GCCCGCCTGACCGTTCGTTTCATCGATTGGCTTAGGCATAC-GTAGT
646 CTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGT
* *** * * * *
15461440 TCATTCCCAGTCTAAGATCAGATTGGAATGAGGGTTGC-AGCAGTAGGATCGGCAGCACGCAGAG
710 TCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-TAGCAGGATCGACAGCACGCAGAG
* * * * * * *
15461504 GGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTTTGGTCGG-TCGAGAACCCGCACGTT
774 GGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCACCCGCACGCT
* * *
15461568 CGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTATAA
838 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15461614 G-AT-C--AG---AT--C-G-----GA-C----C-A--AGGGTTGTGGCAGCACATGCTGGGCTC
1 GCATACGGAGTTCATCCCAGTCTAAGATCGAATCGACGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
15461656 GAGCATGTGTTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCGTCGAAGCATCGA-CGGAGAA
66 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATC-ACCGGAGAA
* * *
15461719 CTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
129 CCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCG---ATGATGTGC
* * * *
15461784 GATGGGTGCTGGTACTTGGCCCATATATTAGCCCCCTATCCCTCGTCAAACCTCGACAACTCACA
190 --------C-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15461849 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTGTGAAATA
246 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-
* * * * *
15461914 GGGACTCTTTTTTCAATTGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTAT
310 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * ** *
15461979 GCATGCCAAAAAAAATACAACGATCACGTCTACCAAATTTGGGACCAAAACTCCTT-CTGAAAAC
375 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
15462043 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCG
440 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15462108 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGTAT
505 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15462173 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
570 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15462238 ATCCCGTCTCTCCGGCCAGCGTAGTGCCCGCCCACCCGCCCGTCCGCCCGTTTCATCGGTTGGCT
635 ATCCCGTCTCTCTGGCCGGCGTAGTGTCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * ** * *
15462303 TAGGCATACGGAGTTCATTTACAGTCTAAGATCAGACC-GAACAGAGGGTTGCGGCAACAGGATT
696 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGATAGCAGGATC
* * * *
15462367 GGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
760 GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
15462432 GCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15462491 G-AT-C-G-G---A--CC-G----A-A-C----C-A--AGGGTTACGACAGCACATGCTGGGCTC
1 GCATACGGAGTTCATCCCAGTCTAAGATCGAATCGACGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * *
15462533 GGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGTGCACCCCCGGAGAACC
66 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACC
* *
15462598 TGACCGACGGCATT-GAGGTTCCGGCGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTTCGA
131 TGACCGACGGCATTAG-GGTTCCGACGATCGAGGGGGCCGGGGGGTGT--G--C--GA---T-GA
** * *
15462661 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGACCTCACACC
185 T--GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
15462726 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCTTAAATGAG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-G
* * *
15462791 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGC
312 GGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
15462856 ATGCCAAAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCCAAAAAAATT
377 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
15462921 TTAAAAAATC-CTGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGAT-GTGTTG
442 TTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-TCGTCTTG
* *
15462984 CCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
505 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15463049 TGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
570 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
15463114 ATCCCGTCTCTCTGGCCGGCATAGTGTTTGCCCGCCTGCCCGCTCGTTTCATCGGTCGGCTTAGG
635 ATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
15463179 CATACGGAGTTCATTCCCAGTTTAAGATCGAACCTA-ACTGAGGGTTGCGGTAGTAGGATC-AGC
700 CATACAGAGTTCATTCCCAGTCTAAGATCGGACC-AGACTGAGGGTTGCGATAGCAGGATCGA-C
* * * * **
15463242 AGCACGAAGAGGGGGACCC-AGCCGATCCTCGGCTTGCACATCCTGCCCCTCTGGCTAGCTGAGC
763 AGCACGCAGAGGGGGACCCGA-TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*** * * * *
15463306 ACCTTTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAATCTAA
827 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15463363 GCATACGGAGTTCAATCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTC-ATCCCAGTCTAAGATCGAATC-GA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * **
15463428 CTTGGGCATGTGTAGGTGCCTCCTTTTTCTTTG-TCGAGCACCATCACCAGAGCATTGCCGGAGA
63 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGA
** * *
15463492 ACCTGACCGGTGGCATT-GGGTTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 ACCTGACCGACGGCATTAGGG-TTCCGACGATCGAGGGGGCC-GGGGGGTGT--G--C--GA---
*
15463556 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 -TGAT--GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15463621 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
244 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15463686 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTGTTTT
309 TGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15463751 GTGCATGCCAAAAAAAATACAAGGATCACGTCCAGCAATTTTGGGGCCAAAACTCCTTTCGAAAA
373 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *** * * * *
15463816 AATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGATTCATCT
438 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15463881 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
503 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * * *
15463946 ATCAACATTCAGAAATATGAAGATGTGACTAAACCAACCTACCACCCTATCCCG-T-CA---ATT
568 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT--CGATCCACGGCTT
* * * * *
15464006 -TG-A--CCGACT-T-TGTGCC--CGCA-----CGCCCGCCCGCCCGCTCATTTTGTCGGTTGGC
631 GCGCATCCCGTCTCTCTG-GCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * ** *
15464058 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGTAGGA-C
695 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATC
* * *
15464122 AGACAGCACGTAGAGGGGGACCCG-TCGATCC-CTGGCTTGCGCATCCTGCCCCTCTGGCCGGAT
760 -GACAGCACGCAGAGGGGGACCCGATCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
15464185 GAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T--
823 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15464242 --ATA---AG---AT--C-G---AA-ATCG-A-C--CGACGGTTGCGGCAGCACATGCTAGGCTC
1 GCATACGGAGTTCATCCCAGTCTAAGATCGAATCGACGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
15464288 GGGCACGTGTTGGTGCCGCATTTTTCTTCG-TCGAGGCACCATCGTCGGAGCATCGCCGGAGAAC
66 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCATCACCGGAGAAC
* * * * * *
15464352 TTGACTGGCGACATTGGGGTTCCGACGATCGTGGGGGCCGGGGGGTGTGCGCACATGTTGTGTGA
130 CTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCG---A-------TGA
* *
15464417 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
185 T--GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
15464482 CCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
248 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15464547 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGC
313 G-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
15464612 AAGCCAACAAATATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCCTCCGAAAAAATT
377 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
15464677 TTAAGAAATATCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
442 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
15464742 ATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
507 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
15464807 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
572 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * *
15464872 CCCGTCTCTCTGGCCGATGTAGTGTCCGACCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
637 CCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
15464937 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCT-GCAGGATCGGCAGC
702 TACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CGATAGCAGGATCGACAGC
** * ** * * * *
15465001 ATACAGA-GGGGACTCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCAGGCTGAGCACCC
766 ACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
15465065 GCACGCTCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
15465118 GCATACGGAGTTCATTCCCAGTCTACGATC-AGATCGGACCGAGGGTTGCGATAGCACATGCTAG
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCGA-ATC-GA-CGAGGGTTGCGGCAGCACATGCTGG
* ** * * **
15465182 GCTCGGGCATGTGTTGGTGTCATATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGTCGGAG
62 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAG
* * *
15465247 AACCTGACCGACGGCATTTGGGTTCC-AGCGATCGAGGGGGCTGGGGGGTATGCGCCCATGATGT
127 AACCTGACCGACGGCATTAGGGTTCCGA-CGATCGAGGGGGCCGGGGGGTGTGCG---ATGATGT
* *
15465311 GCGATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCCA-AACTCA
188 GC--------C-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15465375 CA-CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
244 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15465439 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAG-TTTTAGCTGAATGTTTTT
309 TGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15465503 GTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
373 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
15465568 AATTTTAAAAAATCCCGAACCGTAAATAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
438 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15465633 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
503 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
15465698 ATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
568 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
15465763 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCCACCCACCTGCTCGCTCGTTTCATCGGTTGGCTT
633 GCATCCCGTCTCTCTGGCCGGCGTAGTG-TCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
15465828 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGC-AGTAGCAGGATCG
697 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-TAGCAGGATCG
* * * * * *
15465892 ACAGCACACAGAGGGGGACCTG-GCTGATCCTCGGCTTGCGCATCCTGCCCCTCTAGCTGGCTGA
761 ACAGCACGCAGAGGGGGACCCGATC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15465956 ACGCCCGCAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
825 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
15466011 -C-TA---AG---AT--C-G-----GATCGAAT---CGAGGGTTGCGACAGCACATGCAAGGCTC
1 GCATACGGAGTTCATCCCAGTCTAAGATCGAATCGACGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * * * *
15466057 GGGCATGTACTGGTGCCGTATTTTTTCTTCGCCT-AGGCACCCTCGTCGGAGCATCGCCGGAGAA
66 GGGCATGTGTTGGTGCCGCA-TTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCACCGGAGAA
* * * * * *
15466121 CCTGACAGCCGACATTAGGGTTTCGATGATCG-GAAGGGCCGACGGGGGTGTGCGTATATAATGT
129 CCTGACCGACGGCATTAGGGTTCCGACGATCGAG-GGGGCCG--GGGGGTGTGCG------A--T
* *
15466185 GCAATGGGTGCTGATACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
183 G--AT--GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
15466249 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACAT-CTTGTAGCCATTAAAGTGTCTGAA
244 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15466313 ATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTC
308 ATGGG-GCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15466378 GGTGCATG-C--CAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCAAAA
372 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
** *
15466440 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
437 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
15466505 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
502 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * * *
15466570 CATTGGCACATAGAAATATGAAGACGTGCCTAAACCCA-CTACCACCCTCTCAATGCACGGCTTG
567 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15466634 CGCATCCCGTCTTTCTGGTCGGTGTAGTGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCGTTTG
632 CGCATCCCGTCTCTCTGGCCGGCGTAGTGTCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTG
* * ** * *
15466699 GCTTAGGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCA
693 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCA
15466761 CATGTTGGGC
Statistics
Matches: 6083, Mismatches: 623, Indels: 440
0.85 0.09 0.06
Matches are distributed among these distances:
851 1 0.00
853 1 0.00
854 1 0.00
855 3 0.00
856 3 0.00
857 577 0.09
858 67 0.01
859 3 0.00
860 3 0.00
861 4 0.00
862 7 0.00
863 3 0.00
864 7 0.00
865 4 0.00
866 3 0.00
867 5 0.00
868 1 0.00
869 72 0.01
870 190 0.03
871 222 0.04
872 468 0.08
873 241 0.04
874 42 0.01
875 395 0.06
876 245 0.04
877 307 0.05
878 7 0.00
879 5 0.00
880 1 0.00
881 9 0.00
882 12 0.00
883 270 0.04
884 188 0.03
885 830 0.14
886 329 0.05
887 75 0.01
888 6 0.00
889 6 0.00
890 2 0.00
891 11 0.00
892 11 0.00
893 2 0.00
894 3 0.00
895 288 0.05
896 205 0.03
897 262 0.04
898 266 0.04
899 415 0.07
900 3 0.00
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCGAATCGACGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACC
TGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGATGATGTGCCGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGA
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGGGGGACC
CGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15460741 original size:26 final size:26
Alignment explanation
Indices: 15460705--15460757 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15460695 GTTGACTTAG
15460705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15460731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15460757 G
1 G
15460758 ATCGAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15463373 original size:26 final size:26
Alignment explanation
Indices: 15463337--15463389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15463327 GTTGACTTAG
* *
15463337 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
*
15463363 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
15463389 G
1 G
15463390 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:15465128 original size:26 final size:26
Alignment explanation
Indices: 15465092--15465142 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15465082 TTTGACTTAG
15465092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15465118 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15465143 CGATCAGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15467346 original size:715 final size:715
Alignment explanation
Indices: 15465966--15467475 Score: 2178
Period size: 715 Copynumber: 2.1 Consensus size: 715
15465956 ACGCCCGCAG
* * * * * *
15465966 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAATCG
1 GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCG
* * ** *
15466030 AGGGTTGCGACAGCACATGCAAGGCTCGGGCATGTACTGGTGCCGTATTTTTTCTTCGCCTAGGC
65 AGGGTTGCGGCAGCACATGCAAGGCTCAGGCATGTACTGGTGCCACATTTTTTCTTCGCCGAGGC
* * * * * *
15466095 ACCCTCGTCGGAGCATCGCCGGAGAACCTGACAGCCGACATTAGGGTTTCGATGATCGGAAGGGC
130 ACCATCATCGGAGCATCGCCAGAGAACCTGACAGACGACATTAGGGTTCCGACGATCGGAAGGGC
* *
15466160 CGACGGGGGTGTGCGTATATAATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCTAT
195 CGA-GGGGGTGTGCGCACATAATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCTAT
* *
15466225 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACATC
259 CCCTCATCAAAACTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACATC
** * *
15466290 TTGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAGACT
324 CAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
15466355 TCGAGTTTTTAGCTGAATTTTTCGGTGCATGCCAAAAATACAAGGATCACGTCTACTAAGTTTGG
389 TCGAGTTTTTAGCTGAATTTTTCGGTGCATGCCAAAAATACAAGGATCACGTCTACCAAGTTTGG
*
15466420 GGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGA
454 GGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGA
*
15466485 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
519 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
15466550 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGACGTGCCTAAACCCACTACCAC
584 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGACGTGCCTAAACCCACTACCAC
* * * *
15466615 CCTCTCAATGCACGGCTTGCGCATCCCGTCTTTCTGGTCGGTGTAGTGCCCGCCCGCCCACCCAC
649 CCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCGCCCACCCAC
15466680 CC
714 CC
* **
15466682 GCTCGTTTCGTCGTTTGGCTTAGGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
1 GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
* *** * * * **
15466747 GGGTTGCGGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCACA-TTTTTCTTTGCCGGGGTG
66 GGGTTGCGGCAGCACATGCAAGGCTCAGGCATGTACTGGTGCCACATTTTTTCTTCGCCGAGGCA
* *
15466811 CCATCATCGGAGCATCGCCAGAGAACCTGACAGACGACATTGGGGTTCCGACGATC-GAGGGGGC
131 CCATCATCGGAGCATCGCCAGAGAACCTGACAGACGACATTAGGGTTCCGACGATCGGA-AGGGC
* *
15466875 CG-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CGAGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGG-CCCCTAT
* * * *
15466939 CCCTCATCAAAACTTGAAAACTCACACCCCCTTAAAGAGCATTTGATG-TTTTATAGGTTTGC-T
259 CCCTCATCAAAACTCGAAAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAAGTTTACAT
*
15467002 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 -CCAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15467067 CTTCGAGTTTTTGGCTGAATTTTT-TGTGCATGCCAAAAAAAATACAAGGATCATGAT-TACCAA
387 CTTCGAGTTTTTAGCTGAATTTTTCGGTGCATGCC---AAAAATACAAGGATCACG-TCTACCAA
* *
15467130 GTTTGGGGCCAAAAAT-TTTTCGAAAAAACTTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAA
448 GTTTGGGGCCAAAAATCCTTTC-AAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
15467193 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCATGTTAAGGCTTAAGGGACCATT
512 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
15467258 GTATGAATTTACAAGCCATAAAAATGGCA-TGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
577 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGACGTGCCTAAACCCA
* *
15467322 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGTGGTGCCCGCCCGC
642 -CTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCGC
* * **
15467387 TCGCCTGCCC
706 CCACCCACCC
* * *
15467397 GCTCATTTCGTCGATTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGA
1 GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
15467462 GGGTTGCGGCAGCA
66 GGGTTGCGGCAGCA
15467476 GGATCAGCAG
Statistics
Matches: 707, Mismatches: 76, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
713 60 0.08
714 177 0.25
715 312 0.44
716 156 0.22
717 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (715 bp):
GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
GGGTTGCGGCAGCACATGCAAGGCTCAGGCATGTACTGGTGCCACATTTTTTCTTCGCCGAGGCA
CCATCATCGGAGCATCGCCAGAGAACCTGACAGACGACATTAGGGTTCCGACGATCGGAAGGGCC
GAGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCCCCTATCC
CTCATCAAAACTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACATCCA
GTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTCGGTGCATGCCAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGACGTGCCTAAACCCACTACCACCC
TATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCGCCCACCCACCC
Found at i:15467609 original size:26 final size:26
Alignment explanation
Indices: 15467579--15467631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15467569 GTTGACTTAG
* *
15467579 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15467605 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15467631 G
1 G
15467632 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15469298 original size:26 final size:26
Alignment explanation
Indices: 15469262--15469314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15469252 GTTGACTTAG
*
15469262 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15469288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15469314 G
1 G
15469315 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15471682 original size:879 final size:867
Alignment explanation
Indices: 15466681--15474369 Score: 7957
Period size: 878 Copynumber: 8.9 Consensus size: 867
15466671 CCCACCCACC
* * * * ** * * *
15466681 CGCTCGTTTCGTCGTTTGGCTTAGGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
* * * * * * * * **
15466746 AGGGTTGCGGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGTG
66 AGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
15466811 CCATCATCGGAGCATCGCCAGAGAACCTGACAGACGACATTGGGGTTCCGACGATCGAGGGGGCC
131 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCG-GAGGGCC
*
15466876 -GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
194 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
15466940 CCTCATCAAAACTTGAAAACTCACACCCCCTTAAAGAGCATTTGATG-TTTTATAGGTTTGCTGC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGC
*
15467004 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15467069 TCGAGTTTTTGGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGAT-TACCAAGTT
388 TCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG-TCTACCAAGTT
* * * *
15467133 TGGGGCCAAAAAT-TTTTCGAAAAAACTTTTAAAAAATCTCGAACCGT-AAAAGTTTCAAAAATT
452 TGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATC
* * *
15467196 ATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCATGTTAAGGCTTAAGGGACCATTGTA
516 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
15467261 TGAATTTACAAGCCATAAAAATGGCA-TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
581 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
15467325 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGGTGT-GGTGCCCGCCCGCTC
646 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCGGCGTATGTG--CG--C-CT-
* * * * *
15467389 GCCTGCCCGCTCATTTCGTCGATTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGA-
704 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** * * *
15467453 CAGGACCGAGGGTTGCGGCAGCAGGATCAGCAGCATGTAGAGGGGGACTTAGCTGATCCCTGACT
769 CA-GACAGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCGA-CCGATCCCCGGCT
* * * *
15467518 TGCGTATCCCACCCCTCTGGCCGGCTGGGCACCCGCA
832 TGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCA
* * *
15467555 CGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGA--G-TT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGACCGAAT
** * * * * * * * * * ** * ** * **
15467617 C-A----T-CCCCAGT-CTAAGATCAGAC-CAGACAGAGGGTTAGCAGCAGCA-CATGCTAGGCT
64 CGAGGGTTGCAGCAGTAC-ATGCT-GGGCTCGGGCA-TGTGCT-GGTGCCGCATTTTTCTTCG-T
* ** *
15467673 C-GGGCATCATCACCGGAGCATCGCCGGAGAGCCTGACCGACGGCATTGGGGTTCCGACGATCGG
124 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
* * * *
15467737 GGGGCC-GGGGGGTGTGCGCACTTGATGTGAGATGGGTGCTGGTACCTGGCCCTTATATTGG-CC
188 AGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
15467800 CCTATCCCTCATCAAACCTCGAG-----A-A----CTTAAAGAGCATTTGAGATTTTACAGGTTT
253 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * ** *
15467855 GCCGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAATGGTGACAAAATCTTGT
318 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
15467920 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
383 ACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * * *
15467985 AAGCTTGGGGCCAATACTCC-TTCGAAAAAAATTTAAAAAAATCCTGAAGC-ACAAAAAGTTTTA
447 AAGTTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCCGAACCGTC-AAAAGTTTCA
* *
15468048 AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
510 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
15468113 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
575 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
15468178 CCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCCGGCCGGCGTAATGCCTGCC
640 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGT-ATG--TG--
* * *
15468243 CGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAGACGAAGTTCATTCCCAGTCTAAGAT
699 CGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGAT
** ** * * * * *
15468308 TGGTTCAGACAGAGGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGAGCTGACCGATCCTC
764 CAGACCAGACAGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGA-CCGACCGATCCCC
* * *
15468373 GGCTTGCGCATCCCACCCCTTT-G-CTGCTGAACG--AG-A
828 GGCTTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCA
* * *
15468409 --CT-GTTTCATGGGTTCATGACTTAGGCATACGGATTTCATTCCCAGTCTAAGAT-GGATCGGA
1 CGCTCGTTTCATGGG-T--TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGA
* *
15468470 ATCGAGGGTTG--GCAGCACATGCAT----T--GGCAT-TGCT-GTGTCCGTATTTTTCTT-G-C
62 ATCGAGGGTTGCAGCAGTACATGC-TGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGTC
** * * * * * *
15468523 CAGGCACCCTCAG-C-GAGCATCG-CGGAGAAACCTGGACAG-CGACATT-AGGTCCCGATTGAT
125 GGGGCACCATC-GTCGGAGCATCGCCGGAG-AACCT-GACCGACGGCATTGGGGTTCCG--CGAT
*** * * *
15468583 C-GAGAGG-CTATGGGGTGTGCACATTCAT-ATGTGC-ATGGG-GCTGGTAC--GTCCATTATAT
185 CGGAG-GGCCGGGGGGGTGTGCGCA--CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* ** * *
15468641 TGG-CCCCAATCCCTCATC-AA--T-TTGAACTCAGCA-CCCC-TAAAGATCA--TGTGATTTTA
247 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15468697 CA-G---ACAT-CCAGTAGCCATT-AAGTGTCTGAAAT--GGA-ACCTTTTTCAAA-GGTCACAA
311 CAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * ** * *
15468752 ATTCTTGTA-ACAT-GAGTCCTTAG-TGAA-TTTTGGCATGCATGCC-AAACAAATACAAGGATC
375 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG--TGCATGCCAAAAAAAATACAAGGATC
* * *
15468812 ACGACTACCAAGTTTGGGGCGAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTCAAA
438 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTCAAA
*
15468877 AGTTTCAAAAATCATGAAAAATAAAAAAC-ACGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
503 AGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
15468941 AAGGGACCATTGTATGAATTTAGAAGTCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
567 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
15469006 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC--CG-ATG
632 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTATG
* * *
15469068 T-AG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGAAAACGGAGTTCATTCCCAGTCTAAG
697 TGCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAG
*
15469130 ATCAGACCAGA-ACGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAAGGGGACCCGACCGATC
762 ATCAGACCAGACA-GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGA-CCGACCGATC
* * * * * *
15469194 CCCGGCTTGCGCATCCCGCCCTTCTGGTCGGTTCAGTGCCCGGA
825 CCCGGCTTGCGCATCCCCCCCTT-TGGCCGGCTGAGCGCCCGCA
* * *
15469238 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-
* * *
15469303 TCCCAGTCTAAGATCGGACTGGACTGAGGGTTACAACAGTACAAGCTGGGCTCGGGCATGTGCTG
58 ---C---C---GA----A-T---C-GAGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGCTG
* * * * *
15469368 GTGTCGTATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATTGCCGGAAAACCAT-ACCGACAG
105 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACC-TGACCGACGG
* * * *
15469431 CATTGGTGTCCCGACGATC-GAGGGAGCTGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
168 CATTGGGGTTCCG-CGATCGGA-GG-GCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
15469495 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACGTCGTGAACTAACACCCCC-TAAA
229 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
**
15469559 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTTGACACTTT
294 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
15469624 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTATTTTGTGCATGCCAAC
359 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAA
* * *
15469689 AAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTTC-AAAAAAATTAAAAAAA
423 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* * * ** * * * *
15469753 TCCCAAATCGTAAAAAGTTTTGAAAATCGTGAAATATAGAAAATGAGTCGTCTTGCCTTGAAACT
488 TCCCGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
15469818 TCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCCTTGGCATGCAG
553 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * ***
15469883 AAATATGAAGATGTACCAAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATATTGTCTC
618 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
15469948 TCT----G-G---GT----CAGCCCG--T--TCGTTTCATCAGTTGCCTTAGGAATACGGAGTTC
683 TCTGGCGGCGTATGTGCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTC
* * * * * * * ** *
15469997 ATTCCCAGTCTAAGATCACATCGGA-ATGAAGGTTGCGGTAGTAGAATCGG-TGCACGCGGAGGT
748 ATTCCCAGTCTAAGATCAGACCAGACA-GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGG
* * * * *
15470060 GGACCCAACCGATCCCCAGCTTGCGCATTCCGCCCTTCTGGCCGACTGAGCGCCCGCA
812 GGA-CCGACCGATCCCCGGCTTGCGCATCCCCCCCTT-TGGCCGGCTGAGCGCCCGCA
* * * * * *
15470118 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGATCGAACCG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
* * *
15470183 AGGGTTGTAGCAGTACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCA
66 AGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * * *
15470248 CCATCGCCGGTGCATCACCAGAGAACCTTACCGACGACATTGGGGTTCCAACGATCGGGGGGGCC
131 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATC-GGAGGGCC
*
15470313 GTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCC-A
194 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTA
*
15470377 TCCTTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15470441 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAAATGGTCACAAAATCTTGTACA
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACA
* *
15470506 CTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAG
386 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * * *
15470571 CTTGGGGCCAATACTCC-TTCGAAAAAAATTTAAAAAAATCCTGAAGC-ACAAAAAGTTTTAAAA
450 TTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCCGAACCGTC-AAAAGTTTCAAAA
*
15470634 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATT
513 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
15470699 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
578 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
15470764 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCCGGTCGGCGTAATGCCTGCCCGC
643 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGT-ATG--TG--CGC
* * * **
15470829 CTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAGACGAAGTTCATTCCCAGTCTAAGATTGG
702 CTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * *
15470894 TTCAGACAGAGGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGAGCTGACCGATCCTCGGC
767 ACCAGACAGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGA-CCGACCGATCCCCGGC
* * * *
15470959 TTGCGCATCCCACCCCTTTGGCCAGTTGAACACCCGCA
831 TTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGCCCGCA
*
15470997 CGC-CTGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATC
1 CGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATC
* * * * *
15471061 GAGGGTTGCAGTAGTACATGCTGGGCTGGGGCATGTGTTGGTGCCGTATTTTTCTTCGCCGGGGC
65 GAGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
15471126 ACCATCGTCGGAGCATTGTCAGAGAACCTTACCGTCGGCATT-GGGTTCCTGCAATCGGAGGTGC
130 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGAGG-GC
*
15471190 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTA
193 CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
15471255 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15471320 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAATATCTTGTAGAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15471385 TTTGAGTTTTTAGCTGAATTTGATTGTGCATGCCAAAAAAAATACAAGGATTACGACTACCAAGT
387 TTCGAGTTTTTAGCTGAATTT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
15471450 TTGGGGCGAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTCAAAAGTTTCAAAAATC
451 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATC
*
15471515 ATGAAAAATAAAAAAC-ACGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
516 ATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-
* * *
15471579 TATGAATTTAGAAGTCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAACCCA
579 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCA
*
15471644 CCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGC--CG-ATGT-AG---GCCC
643 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTATGTGCGCCTGCCC
* *
15471701 GCCCGCTCG-TTCGTCGGTTGTGCTTAGGAAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
708 GCCTGCTCGTTTCGTCGGTTG-GCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* *
15471765 A-ACGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAAGGGGACCCGACCGAT-CCCGGTTTGC
772 ACA-GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGA-CCGACCGATCCCCGGCTTGC
* * * * * *
15471828 GCAT-CCGCCCTTCTGGTCGAGTTCAGTGCCCGGA
835 GCATCCCCCCCTT-TGGCCG-GCTGAGCGCCCGCA
* * *
15471862 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-
* * *
15471927 TCCCAATCTAAGATCGGACTGGACTGAGGGTTACAACAGTACAAGCTGGGCTCGGGCATGTGTGC
58 ---C---C---GA----A-T---C-GAGGGTTGCAGCAGTACATGCTGGGCTCGGGCA--TGTGC
* ** *
15471992 TGGTGTCATATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATTGCCGGA-AACCAT-ACCGAC
103 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACC-TGACCGAC
* * * * ** *
15472054 AGCATTGGTGTCCCGATGATC-GAGGGAGTGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
166 GGCATTGGGGTTCCG-CGATCGGAGGG-CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
15472118 TGGTACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAAACGTCGTGAACT-A-ACCCCC-TA
228 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTA
**
15472178 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTTGACACT
292 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15472243 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTATTTTGTGCATGCCA
357 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCA
* * *
15472308 ACAAAAATACAAGGATCACGTCTACCAAAG-TTGGGGCC-AAACTCCTTTCAAAAAAAATTTAAA
421 AAAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * * * * * *
15472371 AAA-CTCGAACCATAAAAAG-TT--GAAATCGTG--AAATA-AAAACGAGCCGTCTTG-CTTGAA
485 AAATCCCGAACCGTCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
15472428 ACTTTAC-TTAAGGCTAAAGGGACCATTGTATGAATTTACAGGCCATAAACAAT-GCA-TGGCAT
550 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA-AATGGCATTGGCAT
*
15472490 GCAGAAATATG-AGATGTGCGCGAAACCC-CCTACCACCCTATCGAT-CACGGCTTG-GCATCCC
614 GCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
15472551 -TCTCTTCTGGCCGACGTA-G-GTGCC-G-CCG-CTGCTTGTTTCATC-GTTCGCTTTAGG-ATA
678 GTCTC-TCTGG-CGGCGTATGTGCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGC-TTAGGAATA
*
15472608 CGGAGTTCGATTTCCCAGTCTAAGACTCAGA-CAGGACTA-AGGGTTGCGATAGCAGGATCGGCA
740 CGGAGTTC-A-TTCCCAGTCTAAGA-TCAGACCA-GAC-AGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * *
15472671 GGACG--GAGGTGGACCCAGCCGATCCTCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGC
800 GCACGTAGAGGGGGACCGA-CCGATCCCCGGCTTGCGCATCCC-CCCCTTTGGCCGGCTGAGCGC
*
15472734 CTGCA
863 CCGCA
* * * ** * * *
15472739 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATTGGACCA
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
* * *
15472804 AGGGTT--ATGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
66 AGGGTTGCA-G-CAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
15472867 CACCATCGTTGGAGCATCGCCGGAGGACCTGACCGGCGGCATTGGGGTTCCGATGATAGG-GGGT
129 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGAGGGC
* * *
15472931 CGGAGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT
193 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
15472996 CCCTCATTAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTCAGATTTTACAGGTTTGCTAC
258 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
15473061 CAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATAGTCACAAAATCGTGTACACT
323 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15473126 TCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACAG-CTACCAAGT
388 TCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC-GTCTACCAAGT
* * * *
15473190 TTGGTGCCACAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCG-CAAAAAAGTTTCAAAAA
451 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTC--AAAAGTTTCAAAAA
* * ** *
15473254 TCGTGAAAAATGGAAAACGAGTAATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
514 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
15473319 TATGAATTTACAAGCCAAAAAAATGGCATTGGAATGCATAAATATGAAGATGTGCCTAAACCCAC
579 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
15473384 CAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTA-GTGC-CC-G--C
644 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTATGTGCGCCTGCCC
* * *
15473444 -CC-GCTCATTTCATCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
708 GCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * ** * * *
15473507 CTGAGGGTTGTGGTAGTAGGATCGGCAGCACACAGAGGGGGACTCGATCGATCCCCAGCTTGTGC
773 CAGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGAC-CGACCGATCCCCGGCTTGCGC
* * * * * *
15473572 ATATCGCCCCTTCGGTCGGCTGGGCGCCGGCA
837 AT-CCCCCCCTTTGGCCGGCTGAGCGCCCGCA
* * * * * *
15473604 CGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTCACAGTCTTAGATCAGACCGGACCG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
* * * *
15473669 AGGGTT-CTAGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGC
66 AGGGTTGC-AGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * * * * * * *
15473733 ACCATCGTCGGAGCATCTTCAGAGAAGCTGAACGGCAGCATTGGGGTTCCGGTGATCGG-GGGTC
130 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGAGGGCC
*
15473797 --GGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
194 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* **
15473860 CCTCATCAAACCTCAAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
15473925 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
**
15473990 -TTGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** *
15474053 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAT-AAAATGTTTTGAAAATCG
453 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTCAAAA-GTTTCAAAAATCA
* * * * *
15474117 TGAAAAATTGAAAACAAGTTGTCTTGCAATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTAT
517 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
15474182 GAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATAAGTAGATGTGGCTAAACCCACCTA
582 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
15474247 CCACCGTATCGATCCACGACTCGCGCATCCCGTCTCTCTGGCTGGCGAAT-TGCCCGCCCACCCG
647 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTATGTG--CG----CCTG
* * * *
15474311 TCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
705 CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGAT
15474370 TGGACCGGAC
Statistics
Matches: 5753, Mismatches: 732, Indels: 662
0.80 0.10 0.09
Matches are distributed among these distances:
823 6 0.00
824 124 0.02
825 1 0.00
826 6 0.00
828 1 0.00
829 34 0.01
830 2 0.00
831 6 0.00
832 9 0.00
833 2 0.00
834 1 0.00
835 7 0.00
836 239 0.04
837 18 0.00
838 8 0.00
839 3 0.00
840 16 0.00
841 9 0.00
842 4 0.00
843 1 0.00
844 13 0.00
845 14 0.00
846 28 0.00
847 1 0.00
848 74 0.01
849 125 0.02
850 54 0.01
851 62 0.01
852 155 0.03
853 35 0.01
854 298 0.05
855 118 0.02
856 307 0.05
857 87 0.02
858 117 0.02
859 205 0.04
860 190 0.03
861 87 0.02
862 48 0.01
863 278 0.05
864 50 0.01
865 338 0.06
866 177 0.03
867 111 0.02
868 76 0.01
869 25 0.00
870 10 0.00
871 2 0.00
872 74 0.01
873 33 0.01
874 73 0.01
875 32 0.01
876 60 0.01
877 144 0.03
878 415 0.07
879 372 0.06
880 162 0.03
881 79 0.01
882 3 0.00
883 20 0.00
884 13 0.00
885 7 0.00
886 17 0.00
887 38 0.01
888 168 0.03
889 13 0.00
890 16 0.00
891 250 0.04
892 122 0.02
893 60 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
AGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGAGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTATGTGCGCCTGCCCGCCTGCTC
GTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGT
TGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCCCCC
TTTGGCCGGCTGAGCGCCCGCA
Found at i:15471922 original size:26 final size:26
Alignment explanation
Indices: 15471886--15471938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15471876 GTTGACTTAG
* *
15471886 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15471912 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15471938 G
1 G
15471939 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15474967 original size:708 final size:704
Alignment explanation
Indices: 15473604--15475099 Score: 2192
Period size: 708 Copynumber: 2.1 Consensus size: 704
15473594 GGCGCCGGCA
* * * * *
15473604 CGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTCACAGTCTTAGATCAGACCGGACCG
1 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * **
15473669 AGGGTTCTAGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCA
66 AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAACATTTTTCTTCGTCGGGGCA
* * * **
15473734 CCATCGTCGGAGCATCTTCAGAGAAGCTGAACGGCAGCATTGGGGTTCCGGTGATCGGGGGTCGG
131 CCATCGTCGGAGCATCGTCAGAGAACCTGAACAGCAGCATTGGGGTTCCGACGATCGGGGGT---
* * * *
15473799 GGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
193 --GTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTTAAATTGGCCCCCTATCCCTC
**
15473864 ATCAAACCTCAAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
256 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* ***
15473929 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTGT
321 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAACT
* *
15473994 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
386 TTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCC
* * *
15474059 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAATGTTTTGAAAATCGTGAAAAA
451 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAA
** ** *
15474124 TTGAAAACAAGTTGTCTTGCAATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTA
516 TAAAAAACAAGCCGTCTTGCAATGAAACTTCACGTGAAGGCCTAAGAGACCATTGTATGAATTTA
* * * *
15474189 CAAGCCATAAAAATGGAATTGGCATGCAGAAATAAGTAGATGTGGCTAAACCCACCTACCACCGT
581 CAAGCCATAAAAATGGAATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
15474254 ATCGATCCACGACTCGCGCATCCCGTCTCTCTGGCTGGCGAATTGCCCGCCCACCCGTCCGC-
646 ATCGATCCACGACTCGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCG----CCCGTCCGCG
**
15474316 CTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC
1 C-GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* *
15474381 AAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAATATTTTTCTTCGTCGGGGC
65 GAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAACATTTTTCTTCGTCGGGGC
* *
15474446 ACCATCGTCGGAGCATCGTCGGAGAACCT-AACCAGCGGCATTGGGGTTCCGACGATCGGGGGT-
130 ACCATCGTCGGAGCATCGTCAGAGAACCTGAA-CAGCAGCATTGGGGTTCCGACGATCGGGGGTG
15474509 TGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTTAAATTGGCCCCCTATCCCTCATC
194 TGTGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTTAAATTGGCCCCCTATCCCTCATC
*
15474574 AAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
259 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15474638 ATTAAAGTGTCTGAAATAGTGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCAACTTT
324 ATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-AACTTT
15474703 TTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCA
388 TTAGCTGAATTTTTTTGTCCATGCCAA-AAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCA
* * *
15474768 AAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAT
452 AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAAT
* * *
15474833 AAAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAC
517 AAAAAACAAGCCGTCTTGCAATGAAACTTCACGTGAAGGCCTAAGAGACCATTGTATGAATTTAC
* * *
15474898 AAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
582 AAGCCATAAAAATGGAATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15474963 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTTCGCG
647 TCGATCCACGACTCGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCGTCCGCG
* * * ** * *
15475021 CGCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTCATTCCCA-TCTAAGATCAGACAGGACTG
1 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
*
15475085 AGGGTTGTGGTAGCA
66 AGGGTTGTGGCAGCA
15475100 GGATCGGCAG
Statistics
Matches: 704, Mismatches: 75, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
703 29 0.04
704 46 0.07
705 1 0.00
706 96 0.14
707 110 0.16
708 252 0.36
712 3 0.00
713 167 0.24
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (704 bp):
CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAACATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCGTCAGAGAACCTGAACAGCAGCATTGGGGTTCCGACGATCGGGGGTGTG
TGCGCACATGATGTGCGATGGGTGCCGGTACTTAGCCCTTAAATTGGCCCCCTATCCCTCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAACTTTTTA
GCTGAATTTTTTTGTCCATGCCAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAA
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAAAA
AACAAGCCGTCTTGCAATGAAACTTCACGTGAAGGCCTAAGAGACCATTGTATGAATTTACAAGC
CATAAAAATGGAATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGACTCGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCGTCCGCG
Found at i:15475238 original size:26 final size:26
Alignment explanation
Indices: 15475204--15475253 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15475194 TTGACTTAGT
* *
15475204 CATATGGAGTTCGTTCCTAGTCTACG
1 CATACGGAGTTCATTCCTAGTCTACG
*
15475230 CATACGGAGTTCATTCGTAGTCTA
1 CATACGGAGTTCATTCCTAGTCTA
15475254 AGATCAGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTACG
Found at i:15476565 original size:901 final size:897
Alignment explanation
Indices: 15474341--15479259 Score: 6151
Period size: 901 Copynumber: 5.5 Consensus size: 897
15474331 GTTGGCTTAG
** * *
15474341 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** *
15474406 CTCGAGCATGTGCTGGTGCAATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
* *
15474471 ACCTAACC-AGCGGCATTGGGGTTCCGACGATC-----G-GGGGTTGTGCGCACATGATGTGCGA
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGTGTGCGCACATGATGTGCGA
* * *
15474529 TGGGTGCCGGTACTTAGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
15474594 CCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGT
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15474658 GACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTTTTGTCC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
* * *
15474723 ATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATT
389 ATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
15474788 TTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGCCGTCTTGCC
453 TTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
15474853 ATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
15474918 GCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
15474983 CCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGTTCGCGCGCTCGTTTCGTCAGTTGGCTTA
648 CCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
15475044 GGCATACAAAGTTCATTCCCA-TCTAAGATCAGACAGGACTGAGGGTTGTGGTAGCAGGATCGGC
713 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGTAGCAGCAGGATCGGC
* * * * * *
15475108 AGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCACAT-CCTGCCCCTCTGGCCGGCTGAAC
778 AGCATGCAGAGGGGGACCGA-CCGATCCCCGGCTTGCGCATACC-GCCCCTCTGGCCGGCTGAGC
* * * * * * * *
15475172 GCCTGCACGCTCATTTCGTGGGTTGACTTAGTCATATGGAGTTCGTTCCTAGTCTAC
841 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * **
15475229 GCATACGGAGTTCATTCGTAGTCTAAGATCAGATCGGACTGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
15475294 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGTCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
* * *
15475359 ACCTGATCGACGTCATTGGGGTTCTGACGATCGGGGGGGTCGGTGGG-GTTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CGG-GGGTG-TGCGCACATGATGTG
* * * * *
15475423 CGATGGTTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCTTCATTAAACCTTGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15475488 ACCCCCTTAAACAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15475553 GGGGACACTTTCTTCAAATGGTCACAAAATCATGTAAACTTCGACTTTTTGGCTGAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
* * * *
15475618 TGCATGCCAACAAAATACAAGGATCACATCTACCATGTTAGGGGCCAAAACTCCTTCCGAAAAAA
386 TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15475683 TTTTAAAAAATCCCAAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15475748 CCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15475813 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGACTTGCGC
581 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15475878 ATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCT
646 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
15475943 AAGGAATATAGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCAGCAGCAGGATC
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACAGAACCGAGGGTTGTAGCAGCAGGATC
* ** * * * * * * *
15476007 AGCAGCACACGGAGGGGGACTCGATCGATCCCCGGCTTGTGCATATCGCCCGTCTGGCTGGCTGG
775 GGCAGCATGCAGAGGGGGAC-CGACCGATCCCCGGCTTGCGCATACCGCCCCTCTGGCCGGCTGA
** * ** * * *
15476072 GCATCGGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAG
839 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15476131 GCATACGGAGTTCATTCACAGTCTTAGATCAAACCAGACCGAGGGTTGTAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
15476196 CTCGGGCATGTGCTGGTGCTGCATTTTTATTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
* * ** *
15476261 AGCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C-GGGGGTGTGCGCACATGATGTGCG
**
15476326 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGTAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15476391 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15476456 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTG
* * ** ** *
15476521 CACGCCAAAAAAATACAAGGATCACGGCTAAAAAGTTTGGGGCCAAAACTCCTTATGAGAAAATT
388 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
15476586 TTAAAAAATCCCGAATCG-AAAAA-TTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
453 TTAAAAAATCCCGAACCGAAAAAAGTTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
15476649 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15476714 GGCTTGCAGAAAT-TGAAAGATGTGCC-AAACCCACCAACCACCCAATCGATCCACGGCTTGCGC
582 GGCATGCAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * **
15476777 ATCCCGTCTCTCTAGCTGGCGTAGTGCCCAGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGTT
646 ATCCCGTCTCTCTGGCTGGCGTAGTGCCC-GCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * ** *
15476842 TTAGGCATACGGAGTTCATTCCCAGTCTACA-ATCAGAGTGCATGGAGGGTTGTGGCAGCAGGCA
710 TTAGGCATACAGAGTTCATTCCCAGTCTA-AGATCAGACAGAACCGAGGGTTGTAGCAGCAGG-A
* ** * * * *
15476906 TCGGTAGCATAAAGAGGGGGACCGACCGATCCCTGGCTTGCGCAT-CCTGCCCTTCTGGCCAGTT
773 TCGGCAGCATGCAGAGGGGGACCGACCGATCCCCGGCTTGCGCATACC-GCCCCTCTGGCCGGCT
* *
15476970 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * *
15477031 TCATATGGAGTTCATTCCCAGTCTAATATTGGACCAGACTGAGGGTTGCGGCAGCTCATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
15477096 CTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAG
* * *
15477160 AACCTGACCGACGGCACTGGGGTTCCGACCGGGGATGGGGACGGGCAGGGGTGGTGCGCACATGT
129 AACCTGACCGACGGCATTGGGGTTCCGA-C---GATCGGG--GGGCGGGGGT-GTGCGCACATG-
*
15477225 ATGTGCG-TGGGTGTTGGTTACTTGGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCT-GAG
186 ATGTGCGATGGGTGCTGG-TACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
15477287 AACTCATACCCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTA
249 AACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
15477352 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTGCACTTCGATTTTTTAGCTGAA
313 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
* ** * * *
15477417 TGTTTTTGTGCACCCCAAAAAAAATACAAGGATCACATCAACCAGGTTTGGGGCCAAAACTCCTT
378 TTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
15477482 CCGAAAAAATTTTAAAAAATCTCGAACC-AAAAAA-TTTTCAAAAATCCTAAAAAATGGAAAACC
442 CCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTT-GAAAATCATGAAAAATAGAAAACG
15477545 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
506 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
15477610 AAAATGGCAATGGCACGTAGAAATAGGAAGATGTGCC-AAACCCACCAACCACCCTATCGATCCA
571 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** * *
15477674 CGGCTTGCGCACCCCATCTCTCTAGCTGGCATAGTGCCCATCCGGCCGCCCGCCCGCTCGTTTCG
636 CGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCG
** * **
15477739 TCGGTTGTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAG-ATGGAGGGTTGTAG
701 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACCGAGGGTTGTAG
* * * * *
15477803 TAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCTTCT
765 CAGCAGGATCGGCAGCATGCAGAGGGGGA-CCGACCGATCCCCGGCTTGCGCATACCGCCCCTCT
* * * * *
15477868 AGCCGGCTGAGTGCCCGCACACTCGTTTTATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGT
829 GGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
15477933 CTAA
894 CTAA
* * * ** * * * **
15477937 TCATATGGAGTTCATTCCCAGTCTAGGATTGGACCAGACTGAGGGTTGCGGCAGCTCATTTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
15478002 CTCGGGCATGTGCTGGTTCAGCATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAGA
* *
15478067 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGTGGTCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGG-GGGC-G-GGGGTGTGCGCACATGATGTG
*
15478132 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15478197 ACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGTTGCCAGTAGCCATTAAAGTGTCT-AAA-
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15478260 GTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCAACTTTTTAGTTGAATTTTTTT
321 G-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
* * *
15478325 GTGCATGCCAACAAAATTACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAA
385 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15478390 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
449 AATTTTAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15478455 TGCCATGAAACTTTACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
15478520 ATTGGCATGCAAAAATATGAAGATCTGCCTAAACCCATGTACCACCCTATCGATCCACGGCTTGC
579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15478585 GCATCCCGTCTCTCTGGCCGGTGTAGT----GCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGG
644 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
15478642 CTTAGGCATAC-GAAGTTCATTCTCGGTCTAAGATCAGACCAG-ACCAAGGGATGCAGCAGTAGT
709 CTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGA-CAGAACCGAGGGTTGTAGCAGCAGG
* ** * * * *
15478705 ATCGACAGCATGCAGAGGCAGACCTGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGAC
772 ATCGGCAGCATGCAGAGGGGGACC-GACCGATCCCCGGCTTGCGCATACCGCCCCTCTGGCCGGC
* * *
15478770 TGAGCGCCTGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
15478832 GCATACGGGGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGATAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * **
15478897 CTCGGGCATGTGTTGGTGCCA-TATTTTTCTTCACCGGGGCACCAT--C---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGA
* * * *
15478951 ACCTGACCGGCGACATTGAGGTTCCGGCGAT-------C-GGGG-G-G-G--C--------CG--
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGTGTGCGCACATGATGTGCGAT
* * * *
15478993 GGG-GATGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGCACTCACACGC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
15479057 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAGTTGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
15479122 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTTTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCA
* *
15479187 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCCG-AAAAATTT
390 TGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
15479251 TAAAAAATC
454 TAAAAAATC
15479260 TCGAGAACGC
Statistics
Matches: 3552, Mismatches: 412, Indels: 166
0.86 0.10 0.04
Matches are distributed among these distances:
856 126 0.04
857 117 0.03
858 2 0.00
859 2 0.00
867 1 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 4 0.00
875 1 0.00
884 34 0.01
887 1 0.00
888 140 0.04
889 2 0.00
893 1 0.00
894 4 0.00
895 266 0.07
896 5 0.00
897 335 0.09
898 122 0.03
899 71 0.02
900 416 0.12
901 511 0.14
902 454 0.13
903 107 0.03
904 16 0.00
905 68 0.02
906 459 0.13
907 283 0.08
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGTAGCAGCAGGATCGGCAGC
ATGCAGAGGGGGACCGACCGATCCCCGGCTTGCGCATACCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15477948 original size:26 final size:26
Alignment explanation
Indices: 15477912--15477961 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15477902 TTGACTTAAG
15477912 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
*
15477938 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
15477962 GGATTGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:15478844 original size:26 final size:26
Alignment explanation
Indices: 15478806--15478858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15478796 GTTGACTTAG
15478806 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
15478832 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15478858 G
1 G
15478859 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:15479531 original size:292 final size:293
Alignment explanation
Indices: 15478998--15479552 Score: 950
Period size: 292 Copynumber: 1.9 Consensus size: 293
15478988 GGCCGGGGGA
* * * * *
15478998 TGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGCACTCACACGCCCTTAA
1 TGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15479063 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAGTTGGGACACTT
66 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
15479128 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTTTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
15479193 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCC-GAAAAATTTTAAAAA
196 AAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
15479257 ATCTCGAGAACGCACATGATGTGCGATGGGTGC
261 ATCTCGAGAACGCACATGATGTGCGATGGGTGC
15479290 TGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15479355 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
15479420 TTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
15479485 CAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
196 AAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
15479550 ATC
261 ATC
15479553 CCGAACCGTA
Statistics
Matches: 245, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
292 228 0.93
293 17 0.07
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (293 bp):
TGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCTCGAGAACGCACATGATGTGCGATGGGTGC
Found at i:15479999 original size:26 final size:26
Alignment explanation
Indices: 15479963--15480015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15479953 GTTAACTTAG
*
15479963 GCATATGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTACC-AGTCTAA
15479989 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
15480015 G
1 G
15480016 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:15482163 original size:898 final size:898
Alignment explanation
Indices: 15479267--15483475 Score: 5695
Period size: 902 Copynumber: 4.7 Consensus size: 898
15479257 ATCTCGAGAA
* *
15479267 CGCACATGATGTGCGATGGGTGCTGGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15479332 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15479397 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
15479462 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCCAAAAC
196 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
15479527 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
261 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
15479592 AACGAGTCATCTTACCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGC
326 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15479657 CATAAAAATGG-ATTTGGGACGTAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
391 CATAAAAATGGCA-TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
15479721 ATCCACGGCTTGCTCATCGCATCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCCGCCCACTCA
455 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCACCCACTCA
* * *
15479786 TTTCATCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATT-GAACCAGACTGAGGGT
516 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAG-ACCAGAC-GAGGGT
** * * * **
15479850 TATGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCAATCCCCAGCTTACGCATCCCGCC
579 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACC
* * * * *
15479915 CCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTC
644 CCTCTCGCCATCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * * *
15479980 CTAGTCTAAGCATAC-GGAGTTCATTACCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGC
709 CCAGTCTAAGCAT-CTGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTACGGCAGC
* * * *
15480044 ACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCA
773 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCA
** ** *
15480109 TCGTCGGAGAACCTGACTAGCGGCATTAGGGTTCCAGCGATC-GGGGGGCCGAGGGGGTGTG
838 TCACCGGAGAACCTGACCGGCAGCATTAGGGTTCCAGCGATCGGGGGGGCCG-GGGGGTGTG
* *
15480170 CGCACATAATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15480235 CTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
15480300 AA-TGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGCT-CACTTCGAGTTTTTA
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTA
* * * * *
15480363 ACTGAATTTTTTTGTGCATGCGAACAGAAATACAAGGATCACGTCTTCCATGTTTGGGGCCAAAA
195 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
15480428 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGA
260 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
*
15480493 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
325 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
15480558 CCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
15480623 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCTGCCCGCTCA
455 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA----CCCACTCA
* ** *
15480688 TTTCGTCGGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
516 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGAC-GAGGGTT
* * * * * * * *
15480753 ACGACAGTAGGATC-AGCAGCACGTAGAGGGGGACCCTG-TCGATCCCCGACCTGCGCATCCTGC
580 GCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCTAC
* * * *** *
15480816 CCCTCTGGCCGAT-TGAACACCCGCATGCTCGTTTCGTCATTTGACTTAGGCAAACGGAGTTCAT
643 CCCTCTCGCC-ATCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
15480880 TCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GCTG
707 TCCCAGTCTAAGCATCTGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTACGGCAG
* *
15480942 -ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACAGGAGC
772 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGC
* * *
15481006 ATCACCGAAGAACCTGACCGACAGCATTAGGGTTCC-GATGATCGGGGGGGCCGGGGGGATGTG
837 ATCACCGGAGAACCTGACCGGCAGCATTAGGGTTCCAG-CGATCGGGGGGGCCGGGGGG-TGTG
* *
15481069 CGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
15481134 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15481199 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
15481264 CTGAATTTTTTTGTACGTGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAC
196 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** **
15481329 TCCTTCCGAAAAAATTTTAAAAAATCCAAAACCG-AGCGAAGTTTCAAAAATCATGAAAAAATAG
261 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATG-AAAAATAG
* * * *
15481393 AAAACGAGTAGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAA
324 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
15481458 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
389 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
15481523 GATCCACGACTTGCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCACTCATTT
454 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCACTCATTT
* * * *
15481588 CGTCAGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACAAGGGTTGCAG
519 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACGAGGGTTGCGG
* * ** * *
15481653 CAGTAGGATCGGCAGCATACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCTACCTCTCT
584 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCT
* *** * * * *
15481718 CGCCCTCTGAGCGTTCGCACGCTGGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAAT
649 CGCCATCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
**
15481783 CTAAGCATCTGGAGTTCATTCCCAGTCTAAGAACGGACTGGACCGAGGGTTACGGCAGCACATGC
714 CTAAGCATCTGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTACGGCAGCACATGC
* ** * *
15481848 TGGGCCCGGGCATGTGCTGGTGCCATATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCACCG
779 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCACCG
** *
15481913 GAGAACCTGACCGGTGGCATTAGGGTTCC-GACGATCGGTGGGG-CGGGGGGTGTG
844 GAGAACCTGACCGGCAGCATTAGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTG
** *
15481967 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCTTTTATATTGGCTCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
15482032 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15482097 AAGTGTTTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
15482162 CTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACGAAGTTTGGGGCCAAAAC
196 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
15482227 TCATTCTGAAAAAATTTTAAAAAA-CCCAAACCGTAAAAGGATTCAAAAATCGTGAAAAATAGAA
261 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
15482291 AACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
326 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
15482356 CATAAAAATGGCATTGGCACCCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGA
391 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
15482421 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCACCCGCCCGCCCACTCGT
456 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCACCCACTCAT
* * * *
15482486 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTG
517 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGA-CGAGGGTTG
* * * * * *
15482551 TGGTAGCAGGATCAACAGCATGCAGAGGGGGACCCGACCGATCCACGGCTTGCACATCCTACCCC
581 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCC
** * *
15482616 TC-CGACCGGCAGAGCACCCGCACGC-CTGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTC
646 TCTCG-CCATCTGAGCACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * **
15482679 TCGGTCTAAG-ATC---AG---------A--C---G---GG----G-CCGAGGGTTGTGGCAGCA
709 CCAGTCTAAGCATCTGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTACGGCAGCA
* * * ** *
15482718 CATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGAAGCAT
774 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCAT
* * * *
15482783 CACCGGAAAACCTGACCTGCAGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTG
839 CACCGGAGAACCTGACCGGCAGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTG
* * * *
15482843 CGCACATGAT-TGCGATGGGTGCTGGTACTTGGCCCTTATTTTAGCTCGCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
15482907 CTTGAGAACTCAAACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15482972 AAGTGTCTGAAATGGGGACACTCTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * ** *
15483037 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAATAAGTTTGGGGCCAAACC
196 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** * **
15483102 ACTTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
261 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
15483167 AACGAGTCGTCTTGCCATTAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGC
326 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** *
15483232 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGA
391 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
15483297 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCATTCGCCCACTCAT
456 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA----CCCACTCAT
* * * *
15483362 TGCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGTTTGGACCAGATGAAGGGTTG
517 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACG-AGGGTTG
* * ** *
15483427 TGACAGCAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCCCCGGC
581 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
15483476 ACACAAATTT
Statistics
Matches: 2940, Mismatches: 325, Indels: 109
0.87 0.10 0.03
Matches are distributed among these distances:
872 10 0.00
875 361 0.12
876 319 0.11
880 2 0.00
883 1 0.00
886 1 0.00
888 1 0.00
895 2 0.00
896 321 0.11
897 83 0.03
898 378 0.13
899 154 0.05
900 333 0.11
901 299 0.10
902 544 0.19
903 131 0.04
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCACTCATTTCG
TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACGAGGGTTGCGGCA
GCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTCG
CCATCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATCTGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTACGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCACCGGA
GAACCTGACCGGCAGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTG
Found at i:15484159 original size:32 final size:26
Alignment explanation
Indices: 15484075--15484140 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
15484065 GTTGACTTAG
15484075 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
*
15484101 GCATACGGAGTTCATTCCCTGCCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
15484127 GCATACGGAGTTCA
1 GCATACGGAGTTCA
15484141 AGTTCATTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:15485931 original size:26 final size:26
Alignment explanation
Indices: 15485902--15485954 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15485892 GTTGACTTAG
15485902 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15485928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15485954 G
1 G
15485955 ATCGGGACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15486192 original size:893 final size:891
Alignment explanation
Indices: 15483482--15488787 Score: 6208
Period size: 893 Copynumber: 5.9 Consensus size: 891
15483472 CGGCACACAA
* ** *
15483482 ATTTTACAAGTTT-CTGCCAGTAAG-CATT-AAGTGTCTTGAAAATGAGGACATTTTTTTTCAAA
1 ATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTC-TG-AAACCAGGACA-CTTTTTTCAAA
* **
15483544 TGGTCACAAAATCATTTGTACAC-TCAAGTTTTTAGCTGAATTTTTTTGTGCATGTGAAAAAAAA
62 TGGTCACAAAATC--TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAA
* * * *
15483608 TACAAGGATCATGTCTACCAACTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAAGTCCC
124 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAG-CTC
* ** * * *
15483672 GAA-CTGTAAAAAGTTTCAAAAAACGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCA
188 GAATC-GCAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * *
15483736 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAA
251 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
*
15483801 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
316 TATGAAGATGTGCCTAAACCCACCT--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
15483866 GGTCGGCGTAGTGCCCCCCGCCCGCCTGCTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCAT
379 GGCCGACGTAGTG--CCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * ** * ** *
15483931 TCCCAGTCTAAGATTAGACCAGATTGAGGGTTACGATAGCAGGATCGGTAGCATATAGAGGGGGA
442 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGGGA
*** * * *
15483996 CCCGGCCGATCCTC-GACTTGCACATCCCGCTCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
507 CCCGATAGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
*
15484060 CGTGTGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCTGCCT
571 CGTGGGTTGACTTAGGCATACGGAGTTCA-----T-TC----C---C--AG---------T--CT
* * *
15484125 AAGCATACGGAGTTCAAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTAC-GACAGCA
610 AAGCATAC-G-G----AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCA
* * * * *
15484189 CATGCTGTGCTCGGGCATGTGTTGGTGCCATA-TTTTCCTCGGCCAGGGCACCATCATCGGAGAA
668 CATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTC-GCCAGGGCACCATCGTCGGAGCA
* ** *
15484253 TCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCAC
732 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
15484318 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
797 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
15484383 GAACTCACACCCCCTTAAAGAGCATTTGGG
862 GAACTCACACCCCCTTAAAGAGCATTTGAG
* *** *
15484413 ATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGAT
1 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
* * *
15484478 CACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATGTTTTTGTGAATGCCAAGAAAAATACAAG
66 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAG
* * * * *
15484543 GATCACGTCTAGCAAGCTTGGGGTCAAAACTCCTTCTGAAAAAATTTT-AAAAAGTCTCGAACCG
130 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAG-CTCGAATCG
* **
15484607 AAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
194 CAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
15484672 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATTTGAAG
258 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
* *
15484737 ATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTTGCGCATCCCGTCTCTTTGGCCGAC
323 ATGTGCCTAAACCCACCT--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15484802 GTAGTGCCCGCTTGCCCGCACGCCCGCTT-ATTTCGTCAGTTGGCTTAGGCATACGGAGATCATT
386 GTAGTGCCC-C--G--C-C-CGCCCG-TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
15484866 CCCAGTCTAAGATCAGATCGGATCGAGGTTTGCGACAGCAGGATCGACA--ACATGCAGAGGGGG
443 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACAT--AGAGGGGG
* * * * * *
15484929 ACTCGGCT-GATCCTCGGCTTGCGCATCCCACTCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
506 AC-CCGATAGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* * * *
15484993 TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATCCGAAGTTCATTCCCAGTT
570 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** ** * * * *
15485058 TAAGATCGAACTGGACCGAGGGTTGTGGCAGCATAGGCTGGGGTTGGGCATGTGTTGGTGCCACA
635 TAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
* * * * * *
15485123 TTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGAAAAACCTGGCCGACGGCATTGGGGTT
700 TTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
*
15485188 CC-AGCGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
765 CCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
15485252 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAG
827 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
15485317 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
1 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
** *
15485382 CACAAAATCTTGTACACTTCTTGTTTTTAGCTGAATTTTTTTTTGCATGCCACAAAAAATACAAG
66 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAATACAAG
*
15485447 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGC
130 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGC
**
15485512 AAAATTTTTTGAAAATCGTGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
195 AAAAAGTTTTGAAAATCGTGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
15485577 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAAAAATATGAAGAT
260 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
* * * *
15485642 GTGCCTAAACCCACCT-A-CC-A-CGATCCACGGCTTGTGCGTCTCGTCTCTTTGGCCGACGTAG
325 GTGCCTAAACCCACCTCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * *
15485703 TGCCCATCTGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAATCTA
390 TGCCC--C-GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
15485768 AGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACATAGAGGGGGACCCGATAGAT
452 AGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGGGACCCGATAGAT
* * *
15485833 CCCCAGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
517 CCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
15485898 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGGAC
582 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGAC
* * * * *
15485963 CAGACCGAGGGTTGCAGCAACACATGCTGGGCCCGGCCTTATGTTGGTGCCACATTTTTCTTCGC
646 CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGC
* * * * *
15486028 CAGGGCACCATCGTCGGAGCATCATCGGATAACTTGACCGGCGGTATTGGGGTTCCGACGATCAG
711 CAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-G
* * * * *
15486093 GCGGGTCGGGGGGTGTGCGCACATTATGTGTGATGGGAGCTGGTACTTGGCCCTTATATTGGCCC
775 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* **
15486158 CCTATCCCTCATCAAACGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
840 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
15486210 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA-TAGGGATACTTTTTTCAAATGG
1 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCA-GGACACTTTTTTCAAATGG
* * *
15486274 TCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCAAAAAAAATATAA
65 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAA
* * * * * * *
15486339 GGATCACCTCTACCAAGTTTGGGGCCAAAAATCGTTCTGAAAAAATTTTAAAAAATCCCGAATCA
129 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCG
* * * * * *
15486404 TAAGAAGTTTGGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
194 CAAAAAGTTTTGAAAATCGT-GAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** * * *
15486469 GCTTAAGCGACCATTGTACAAATTTACAAGCCATAAACATGGCATTGGCATACAGAAATATGAAG
258 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
*
15486534 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
323 ATGTGCCTAAACCCACCT--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
15486599 GTA--G---CGCCCGCCCGCTCGTTTTGTCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCT
386 GTAGTGCCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
15486659 AAGATCAGACC-GAACTGAGGGTTGCAGCAGCAAGATTGACAGCACACAGAGGGGGACCCGATCG
451 AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGGGACCCGATAG
* * *
15486723 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
515 ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
15486788 ACTTAGGCATACGGAGTTCATTCCCAG----A-C-TA---AG---A-T--C-G----A-ATC--A
580 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
**
15486830 --A-ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG
645 CCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCG
* * * *
15486892 TCGGGGCACCATCGTCGGAAGCATCG-CTAGAAAACCTGACCGACGGCATTGGGGTTCCGACGAT
710 CCAGGGCACCATCGTCGG-AGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
15486956 CGGGGGGTCGGGGGGCGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
773 CGGGGGG-CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15487021 GCCCCCTATCCCTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAG
836 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
15487077 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
1 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
** *
15487142 CACAAAATCTTGTACACTTCTTGTTTTTAGCTGAATTTTTTTTTGCATGCCACAAAAAATACAAG
66 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAATACAAG
*
15487207 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGC
130 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGC
** *
15487272 AAAATTTTTTGAAAATCGTGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
195 AAAAAGTTTTGAAAATCGTGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15487337 TTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
260 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
* *
15487402 GTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGT
325 GTGCCTAAACCCACCT--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15487467 AGTGCCCGCCCGCCCGCCCGCCTTCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
388 AGTG--C-CCCGCCCGCCCG--TTC--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** ** *
15487532 AATCTAAGATCAGACCGGACCGA-GG-TGCGGGTAGCGAGGAT-GGTAG-ACATAAAGAACGGAA
446 AGTCTAAGATCAGACCAGACCGAGGGTTGC-GGCAGC-AAGATCGACAGCACAT--AGAGGGGGA
* * * * * *
15487593 CCCGGTACTGATCCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCAACCTGCATGGTCC
507 CCCGATA--GAT-CCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-ACCCGCACGCT-C
* * * *
15487658 ATTTCGTGGCGTTGGACTTTTGGCCATACTGAGGTTCATTCCCAGTC-ATAGCATATGGAGGTTC
567 GTTTCGTGG-GTT-GAC-TTAGG-CATACGGA-GTTCATTCCCAGTCTA-AGCATACGGA-GTTC
** * ** * * *
15487722 ATTCATAGTCTAAGATCAGGACCAGACCG-GGGGTGCATTAGCCACAAGGCTGGGCT-GAGCAGG
625 ATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCAGCAG-CAC-ATGCTGGGCTCGGGCATG
* * * * *
15487785 TGTTGGTGCCTGCATTTTTCTTCCAGTCGGGGCACCATCGTCGGAGGCATCGCCAGAGAACCTGA
687 TGTTGGTGCC-ACATTTTTCTT-C-GCCAGGGCACCATCGTCGGA-GCATCGTCGGAGAACCTGA
* * * * * *
15487850 CTGACGGCATCTGGGGGTTCTGGACGATCAGGGGGGCCGAGGGGTTGTGCCACACATAAT-TGCA
748 CCGACGGCAT-T-GGGGTTC-CGACGATC-GGGGGGCCG-GGGGGTGTG-CGCACATGATGTGCG
*
15487914 ATGGG-GCTGCTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
807 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
15487977 ACCCTTAAAGAGCATTTGAG
872 CCCCTTAAAGAGCATTTGAG
*** *
15487997 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGT
1 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
* * * *
15488062 CACAAAATCTTGTACACTTCGAATTTTTAGCTGACTTTTTTTGTGGAAGCCAACAAAAATACAAG
66 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAG
* * * *
15488127 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAGAATTTTAAAAAATCTCAAACCG
130 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAAGCTCGAATCG
* *
15488192 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACCTCACGTGAAG
194 CAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
15488257 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGTATTGGCATGCAGAAATATGAAG
258 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
* * * *
15488322 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTCGTCGGC
323 ATGTGCCTAAACCCACCT--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15488387 GTAGTGCCCC-CCCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCA
386 GTAGTGCCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * * * **
15488451 AAGATCGGACCATACTGAAGGTTGTGGGATCAAAATCGATAGCACACAGAGGGGGACCCGACCGA
451 AAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGGGACCCGATAGA
* * * * *
15488516 TCCTC-GACTTGTGCATCTCG-CCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTTGTGGGTTG
516 TCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * * * **
15488579 ACTTTGGCATACGGAGTTCATTTCTCAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATTAG
580 ACTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
15488644 ATCAGACCGAGGGTTACAGCAGCACATGCTGGGCTCGTGCATGTGTTGGTGCCACATTTTTCTTC
644 ACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTC
* * ** * * *
15488709 GTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGGCAGCATTGGGGTTCCGACGATC
709 GCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
*
15488774 GGGGGGCTGGGGGG
774 GGGGGGCCGGGGGG
15488788 AGGTGTGCCT
Statistics
Matches: 3819, Mismatches: 428, Indels: 294
0.84 0.09 0.06
Matches are distributed among these distances:
865 76 0.02
866 212 0.06
867 284 0.07
868 3 0.00
871 3 0.00
872 1 0.00
874 10 0.00
876 9 0.00
877 10 0.00
878 68 0.02
879 2 0.00
880 4 0.00
881 35 0.01
882 8 0.00
883 11 0.00
884 3 0.00
885 3 0.00
886 6 0.00
887 8 0.00
888 13 0.00
891 1 0.00
892 196 0.05
893 498 0.13
894 240 0.06
895 13 0.00
896 7 0.00
897 47 0.01
898 29 0.01
899 21 0.01
900 37 0.01
901 21 0.01
902 144 0.04
903 167 0.04
904 315 0.08
905 14 0.00
906 3 0.00
907 4 0.00
908 17 0.00
909 10 0.00
910 22 0.01
911 15 0.00
912 3 0.00
913 1 0.00
914 66 0.02
915 20 0.01
916 29 0.01
917 19 0.00
918 10 0.00
919 50 0.01
920 228 0.06
921 52 0.01
922 191 0.05
923 19 0.00
924 1 0.00
927 3 0.00
928 12 0.00
929 282 0.07
930 24 0.01
931 24 0.01
932 17 0.00
933 8 0.00
934 166 0.04
935 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGCA
AAAAGTTTTGAAAATCGTGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
TGCCTAAACCCACCTCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
GCCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGGGACCCGATAGATCCCC
AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCAGGG
CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
Found at i:15486820 original size:159 final size:159
Alignment explanation
Indices: 15486555--15486849 Score: 423
Period size: 159 Copynumber: 1.9 Consensus size: 159
15486545 CCCACCTACC
* * * *
15486555 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCTCGTTT
1 ACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCGTAGCGCCCGCACGCTCGTTT
* * * * *
15486620 TGTCGGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGAACTGAGGGTTGC
66 CGTCGGTCGACTTAGGCATACGAAGTTCATTCCCAGACTAAGATCGA-ACCAAACCGAGGGTTGC
15486684 AGCAGCAAGATTGACAGCACACAGAGGGGG
130 AGCAGCAAGATTGACAGCACACAGAGGGGG
* *
15486714 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TGAGCGCCTGCACGCTCGTT
1 ACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCGT-AGCGCCCGCACGCTCGTT
* * * *
15486778 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGATCGAATCAAACCGAGGGTTGC
65 TCGTCGGTCGACTTAGGCATACGAAGTTCATTCCCAGACTAAGATCGAACCAAACCGAGGGTTGC
15486843 AGCAGCA
130 AGCAGCA
15486850 CATGCTGGGC
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
158 1 0.01
159 117 0.98
160 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.21
Consensus pattern (159 bp):
ACCCGATCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCGTAGCGCCCGCACGCTCGTTT
CGTCGGTCGACTTAGGCATACGAAGTTCATTCCCAGACTAAGATCGAACCAAACCGAGGGTTGCA
GCAGCAAGATTGACAGCACACAGAGGGGG
Found at i:15488786 original size:920 final size:919
Alignment explanation
Indices: 15486853--15488780 Score: 2547
Period size: 920 Copynumber: 2.1 Consensus size: 919
15486843 AGCAGCACAT
* * ** *
15486853 GCTGGGCTCGGGCATGTGTTGGTGCCGT--ATTTTTCTT-C-GTCGGGGCACCATCGTCGGAAGC
1 GCTGGGCT-GAGCAGGTGTTGGTGCC-TACATTTTTCTTCCAGTCGGGGCACCATCACCGGAGGC
* * * * *
15486914 ATCGCTAGAAAACCTGACCGACGGCAT-T-GGGGTTCCGACGATCGGGGGGTCGGGGGGCGTGTG
64 ATCGCCAGAGAACCTGACGGACGGCATCTGGGGGTTCCGACGATCGGGGGGCCGAGGGGCGTGTG
* * *
15486977 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
129 CACACATAATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
15487042 CTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
194 CTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
***
15487107 AAGTGTCTGAAACCAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTTGTTTTTAG
259 AAGTGTCTGAAACCAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAG
* * *
15487172 CTGAATTTTTTTTTGCATGCCACAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
324 CTGAATTTTTTTGTGCAAGCCACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * **
15487237 TCCTTCCGAAAAAATTTTAAAAAAGCTCGAATCGCAAAATTTTTTGAAAATCGTGAAAATAGAAA
389 TCCTTCCGAAAAAATTTTAAAAAAGCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAATAGAAA
*
15487302 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCA
454 ACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCA
*
15487367 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAA
519 ATAAAAAGGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAA
*
15487432 CCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCTTCTTGTT
584 CCACGGCTTGCGCATCCCGTCTCTCTCGTCGACGTAGTG-CCGCCCGCCCGCCCGCCTTC-TGTT
* *
15487497 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGTGCGG
647 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGACCAGACCGAGGTGCGG
** * * *
15487562 GTAGCGAGGATGGTAGACATAAAGAACGGAACCCGGTACTGATCCCCCAGCTTGTGCATCCCGCC
712 GTAGCGAAAATGATAGACACAAAGAACGGAACCCGGTACCGATCCCCCAGCTTGTGCATCCCGCC
* * *
15487627 CCTCTGGCCGACTGAGCAACCTGCATGGTCCATTTCGTGGCGTTGGACTTTTGGCCATACTGAGG
777 CCTCTGGCCGACTGAGCAACCCGCATGCTCCATTTCGTGGCGTTGGACTTTTGGCCATACGGAGG
* * * *
15487692 TTCATTCCCAGTCATAGCATATGGAGGTTCATTCATAGTCTAAGATCAGGACCAGACCGGGGGTG
842 TTCATTCCCAGTCATAGCATATGGAAGTTCATTCACAATCTAAGATCAGGACCAGACCGGGGGTA
**
15487757 CATTAGCCACAAG
907 CAGCAGCCACAAG
* **
15487770 GCTGGGCTGAGCAGGTGTTGGTGCCTGCATTTTTCTTCCAGTCGGGGCACCATCGTCGGAGGCAT
1 GCTGGGCTGAGCAGGTGTTGGTGCCTACATTTTTCTTCCAGTCGGGGCACCATCACCGGAGGCAT
* * *
15487835 CGCCAGAGAACCTGACTGACGGCATCTGGGGGTTCTGGACGATCAGGGGGGCCGAGGGG-TTGTG
66 CGCCAGAGAACCTGACGGACGGCATCTGGGGGTTC-CGACGATC-GGGGGGCCGAGGGGCGTGTG
15487899 CCACACATAAT-TGCAATGGG-GCTGCTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
129 -CACACATAATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
15487961 CCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
193 CCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*** *
15488026 AAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTA
258 AAAGTGTCTGAAACCAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTA
* *
15488091 GCTGACTTTTTTTGTGGAAGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
323 GCTGAATTTTTTTGTGCAAGCCACA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
15488155 ACTCCTTTCGAAAAGAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
387 ACTCCTTCCGAAAA-AATTTTAAAAAAGCTCAAACCGCAAAAAGTTTTGAAAATCGTG-AAAATA
*
15488220 GAAAATGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
450 GAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
15488285 AGCCATAAAAAGGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
515 AGCAATAAAAAGGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
15488350 CGATCCACGGCTTGCGCATCCTGTCTCTCTCGTCGGCGTAGTG-C-CCC-CCCGCCCG-C-TC-G
580 CGAACCACGGCTTGCGCATCCCGTCTCTCTCGTCGACGTAGTGCCGCCCGCCCGCCCGCCTTCTG
* * * * * *
15488409 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCATACTGAAGGTT
645 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGACCAGACCG-AGG-T
* * * ** * * *
15488474 GTGGG-ATC-AAAATCGATAG-CACACAGAGGGGGACCC-G-ACCGATCCTCGA-CTTGTGCATC
708 GCGGGTAGCGAAAAT-GATAGACACAAAGAACGGAACCCGGTACCGATCCCCCAGCTTGTGCATC
* * * *
15488533 TCG-CCCTCTGGCCGGCTGAGC-ACCCGCATGCT-CGTTTTGTGG-GTT-GAC-TTTGG-CATAC
772 CCGCCCCTCTGGCCGACTGAGCAACCCGCATGCTCCATTTCGTGGCGTTGGACTTTTGGCCATAC
* * * *
15488591 GGA-GTTCATTTCTCAGTC-TAAGCATAT-GAAGTTCATTCCCAATCTAAGATTA-GATCAGACC
837 GGAGGTTCA-TTCCCAGTCAT-AGCATATGGAAGTTCATTCACAATCTAAGATCAGGACCAGACC
* *
15488652 GAGGGTTACAGCAG-CAC-AT
900 G-GGGGTACAGCAGCCACAAG
* *
15488671 GCTGGGCTCGTGCATGTGTTGGTGCC-ACATTTTTCTT-C-GTCGGGGCACCATCACCGGA-GCA
1 GCTGGGCT-GAGCAGGTGTTGGTGCCTACATTTTTCTTCCAGTCGGGGCACCATCACCGGAGGCA
* * *
15488732 TCGTCGGAGAACCTGATCGG-CAGCAT-T-GGGGTTCCGACGATCGGGGGGC
65 TCGCCAGAGAACCTGA-CGGACGGCATCTGGGGGTTCCGACGATCGGGGGGC
15488781 TGGGGGGAGG
Statistics
Matches: 898, Mismatches: 93, Indels: 63
0.85 0.09 0.06
Matches are distributed among these distances:
894 7 0.01
895 7 0.01
896 7 0.01
897 1 0.00
898 22 0.02
899 20 0.02
900 1 0.00
901 19 0.02
902 27 0.03
903 34 0.04
904 22 0.02
905 5 0.01
906 3 0.00
907 3 0.00
908 8 0.01
909 9 0.01
910 17 0.02
911 12 0.01
912 9 0.01
913 1 0.00
914 67 0.07
915 10 0.01
916 22 0.02
917 18 0.02
918 9 0.01
919 50 0.06
920 227 0.25
921 51 0.06
922 189 0.21
923 21 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (919 bp):
GCTGGGCTGAGCAGGTGTTGGTGCCTACATTTTTCTTCCAGTCGGGGCACCATCACCGGAGGCAT
CGCCAGAGAACCTGACGGACGGCATCTGGGGGTTCCGACGATCGGGGGGCCGAGGGGCGTGTGCA
CACATAATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
TGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAACCAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCT
GAATTTTTTTGTGCAAGCCACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAAGCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAAT
AAAAAGGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACC
ACGGCTTGCGCATCCCGTCTCTCTCGTCGACGTAGTGCCGCCCGCCCGCCCGCCTTCTGTTTCAT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGACCAGACCGAGGTGCGGGTAG
CGAAAATGATAGACACAAAGAACGGAACCCGGTACCGATCCCCCAGCTTGTGCATCCCGCCCCTC
TGGCCGACTGAGCAACCCGCATGCTCCATTTCGTGGCGTTGGACTTTTGGCCATACGGAGGTTCA
TTCCCAGTCATAGCATATGGAAGTTCATTCACAATCTAAGATCAGGACCAGACCGGGGGTACAGC
AGCCACAAG
Found at i:15489084 original size:26 final size:26
Alignment explanation
Indices: 15489054--15489106 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15489044 GTTGACTTAG
15489054 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15489080 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15489106 G
1 G
15489107 ATTAGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15489199 original size:468 final size:469
Alignment explanation
Indices: 15488323--15489262 Score: 1280
Period size: 468 Copynumber: 2.0 Consensus size: 469
15488313 AATATGAAGA
* ** * *
15488323 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTCGTCGGCG
1 TGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCTCGCCGACG
* * *
15488388 TAGTGCCCCCCCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAA
66 TAGTGCCCCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCAAA
* * * * *
15488453 GATCGGACCATACTGAAGGTTGTGGGATCAAAATCGATAGCACACAGAGGGGGACCCGACCGATC
131 GATCGAACCAGACCGAAGGTTGTGGGATCAAAATCGACAGCACACAAAGGGGGACCCGACCGATC
* * * **
15488518 CTCGACTTGTGCATCTCGCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTTGTGGGTTGACTT
196 CCCGACTTGTGCATCTCGCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
15488583 TGGCATACGGAGTTCATTTCTCAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATTAGATCA
261 AGGCATACAGAGTTCATTTCCCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATTAGATCA
* * * * * **
15488648 GACCGAGGGTTACAGCAGCACATGCTGGGCTCGTGCATGTGTTGGTGCCACATTTTTCTTCGTCG
326 GAACGAGGGTTACAGCAGCACATACTGGGCTCGGGCACGTGTTAGTGCCACATTTTTCTTCACCG
*
15488713 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGGCAGCATTGGGGTTCCGACGATCGG-G
391 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGAG
*
15488777 GGGCTGGGGGGAGG
456 GGGCCGGGGGGAGG
*
15488791 TGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCTGGCCGACG
1 TGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCTCGCCGACG
* *
15488856 TAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAA
66 TAGTGCCCCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCAAA
* ** * ** * * * *
15488921 GATCTAACTGGACCG-AGGATTGTGGTAGT-AGGATC-AGCAGCACGCAAAGGGTGACTCGATCG
131 GATCGAACCAGACCGAAGG-TTGTGGGA-TCAAAATCGA-CAGCACACAAAGGGGGACCCGACCG
* * * *
15488983 ATCCCCGGCTTGTGCATCTCGCCCCTCTGGCTAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTG
193 ATCCCCGACTTGTGCATCTCG-CCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
*
15489048 ACTTAGGCATACAGAGTTCA-TTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATTA
257 ACTTAGGCATACAGAGTTCATTTCCCAGTCTAAGCATA-AGAAGTTCATTCCCAATCTAAGATTA
** * * * *
15489111 GATTGGAATGAGGGTTACGGTAGCACATACTGGGCTCGGGCACGTGTTAGTGCCGCATTTTTCTT
321 GATCAGAACGAGGGTTACAGCAGCACATACTGGGCTCGGGCACGTGTTAGTGCCACATTTTTCTT
* *
15489176 CACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCGTTGGGGTTCCGACGAT
386 CACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGAT
15489241 CGGAGGGGCCGGGGGGAGG
451 CGGAGGGGCCGGGGGGAGG
15489260 TGT
1 TGT
15489263 ACCCACATGA
Statistics
Matches: 409, Mismatches: 57, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
467 4 0.01
468 332 0.81
469 73 0.18
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (469 bp):
TGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCTCGCCGACG
TAGTGCCCCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCAAA
GATCGAACCAGACCGAAGGTTGTGGGATCAAAATCGACAGCACACAAAGGGGGACCCGACCGATC
CCCGACTTGTGCATCTCGCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACAGAGTTCATTTCCCAGTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATTAGATCA
GAACGAGGGTTACAGCAGCACATACTGGGCTCGGGCACGTGTTAGTGCCACATTTTTCTTCACCG
GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGAG
GGGCCGGGGGGAGG
Found at i:15490357 original size:26 final size:26
Alignment explanation
Indices: 15490321--15490370 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15490311 TCAGTCCGAC
*
15490321 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15490347 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15490371 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15491115 original size:895 final size:896
Alignment explanation
Indices: 15489386--15500341 Score: 13471
Period size: 903 Copynumber: 12.3 Consensus size: 896
15489376 TGCTGCTAGT
* * * * * * * *
15489386 AGCCCAGCATGTGCTACCGTAACTCTCGG-TCTGGTCCTATCTTAGAATGGGAATGAACTCCATA
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTTCGTA
* * * ** *
15489450 TGCTTAGACTGGGAATGAACTTCGTATTCCTAAGTCAACCCATGAATTGAGCGTACGGGCGCTCA
65 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
15489515 GCCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCAGCTC-GGTCTCCCTCTACGTACTACTGA
130 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAG-TCGGGTCCCCCTCTGCTTGCTGCCGA
* * *
15489579 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
194 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
** * * * * *
15489644 CAAAAGATGAAACGAGCGGGCGGGCAGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCAT
259 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * **
15489709 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTTATTTTT
324 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
**
15489774 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTTTGGCAAGACGACTC
389 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
15489839 CTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTCGAAA
454 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * *
15489904 GGATTTTTGGCCCCAAACTTGGTAGATGTGATCGTTGTATTGTTT-TTGGCATGCACAAAGAAAT
519 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAAT
* *
15489968 TCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGAC
583 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
15490033 ACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCCTTAA-GGGGTGTCAGTTCT
648 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
15490097 CAAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTG
713 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* **
15490162 TGT-GCACACCCCCCCGACCCCCCCGATCGC-CGGAACCCCAATGTTGTCGGTCAGGTTCTCCGA
778 T-TCGCACA-CCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * * *
15490225 TGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGAGGTAGCAGCACATGCCCA
841 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
15490281 AGCCCAGCATATGCTACCGCAACCCTCGGTTCAGTCCGACCTTAGACTGGGAATGAACTTCGTAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* * *
15490346 GCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTC-G
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15490410 ACCGGTCAGAAGGGCAGGATGTGCGAGTCGGGGATCAGTCGAGACCCCCTCTGCTTGCTGCCAAT
131 -CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGAT
* ** * * * *
15490475 CTTGCTACTACAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGC
195 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
* *
15490540 AACCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
260 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
15490605 GATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTT
325 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
15490670 TGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCG
390 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * * * *
15490735 TTTTTTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAA
455 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * * *
15490800 GATTTTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCGCAAAAAAATTT
520 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
15490865 AGTTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTCAATAAAGTGTCCCCATTTCAGACAC
585 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
**
15490930 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAA
650 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
15490995 AGGTTTAATGAGGGATAAGGGGCCAATATAAGAGCCAAGTAACAGCACCCATCACACATCATGTT
715 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTT
* * * *
15491060 CGCACAGCCCCCGGCCCCCCCGATC-CTCGGAACCTCAATGCCGTCGGTCAGGTTCTCTGGCGAT
780 CGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** ** * *
15491124 ACTCCGGCGATGGCACCCCGGTGAAGAAAAATGCGGCACTAGCACATGCCCA
845 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
15491176 AGCCCAGCATCTGCTGCTGCAACCCTC-G----GT----TC----A----G--T---C--CG-AT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* * * *
15491216 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGTGCGCTCAA
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
15491280 CCGGCCAGAGGGGTGGAATGCACAA-TCGAGGATCAGTCGGGTCCCCTTCTG-TGTGCTATCAAT
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCT-TGCTGCCGAT
* *
15491343 CCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGA-TGGGAATGAACTTCGTACGCCTAAGCC
195 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
* *
15491407 AACCAACGAAACGAGCGGGTCGGTGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGAT
260 AACCGACGAAACGA------------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
15491472 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAAGCACATCTTCATATTTTTACATGCCA
313 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
15491537 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGG
378 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * **
15491602 CAAGATGACTCATTTTCTATTTTTCACCATTTTTGAATCATTTTGTGGTTCGGGATTTTTTAAAA
443 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * * * * *
15491667 TTTTTTCAGAAGGAATTTTAGCCCCAAACATGGTAGACGTGATCCTTCTATTTTTTTTGGGATGC
508 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
15491732 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
573 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
15491797 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGG
638 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
15491862 TGTGAGTTCTTGAGGTTTGATGAGGGAT-AGGTGGCCAAAATAAGGGCCAAGTACCAGCACCCAT
703 TGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
15491926 CGCACATCATGTTCGCACA-CCCCC--CCACCCTGATTGCT-GGAACCTCAATGCCGTCGGTCAG
767 CGCACATCATGTTCGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAG
* * * * ** *
15491987 ATTCTCCAACGATGCTCCGACGATGGAGCCCCGACAAAGAAAAATAAGGCACCAGCATATGCCCG
832 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
15492052 AGCCTAGCATGTGTTGCTGCAA-CC-C---TC-G---G-TC-----C--GG--T---C--C-AAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* **
15492092 -CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAG
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15492156 CCGGCCAGAGGGGTGGGATGAGCAAGTCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCTGATC
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGATC
* * * * *
15492221 CTGCTGCTGCAACCCTCTGTCCGGGT-TGATCTTAGATTGGGAATGAA-TTCCGTATGCCTAAGC
196 CTGCTACCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTT-CGTATGCCTAAGC
* * * * *
15492284 CAACTGACGAAATGAGCAGGCGGACGGGCGAGCACTATGCCGACCAGAGAGACGGGATGCGCAAG
259 CAACCGACGAAACGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
15492349 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
320 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* **
15492414 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGATT
385 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * **
15492479 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCAAGATTTTTTAAAATTTTTTC
450 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* ** * * * *
15492544 GCAAGCCGGTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
515 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
15492609 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
580 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
15492674 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGCGAGT
645 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15492739 TCTCGAGGTTTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
710 TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
15492804 ATGTGCG-ACACCCCCCAGGCCCCCCCGATTGCT-GAAACCCTAATGCCGCCGGTCAGGTTCTCC
775 ATGTTCGCACACCCCCC-GGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
*
15492867 GACGATGCTCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
839 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
15492925 AGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGACCTTAGACTGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* * *
15492990 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTACGGGCGCTCAG
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * * * *
15493055 TTGGCCAGAAGGGCGGGATGTGCGAGCCGGGGATC-GATCGAGACCCCCTCTGCGTGCTACCAAT
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAG-TCGGGTCCCCCTCTGCTTGCTGCCGAT
* * * * **
15493119 CTTGCTACTGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
195 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
* *
15493184 AACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
260 AACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
15493249 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATTCCATT
321 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
15493314 TTTTTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGGAAGACGA
386 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
15493379 CTCGTTTTCTATTTTTCATGATTTTAAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
451 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
15493444 GAAAGATTTTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAG
516 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
15493509 ATTCAGTTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTCAATAAAGTGTCCCCATTTCAG
581 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
15493574 ACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGTTGTGAGTT
646 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15493639 CTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA--G--CA-CA
711 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
15493699 ----C-C-C-TCCCCTGACCCCCCCGATCGC-CGGAACCCCAATGCCGTCGGTCAGGTTCTCTGG
776 TGTTCGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** *
15493756 CGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCG
841 CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
15493812 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGGTCCGATCTTAGACTGCGAAAGAACTC
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGT----TC-AGTCCGATCTTAGACTGGGAATGAACTT
*
15493877 CGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
61 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * ** *
15493942 CTCAGATGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCAACATGCTGC
126 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGC
* * * * * ** * *
15494006 TGATCCTACTATCGTAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
191 CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
* * * ** * * * * *
15494071 AGCCAACTGACGAAACAAGCGGACGGGCAGGCGGGCACTTTGTCAGCCAAAAAGACTGGATGCGC
256 AGCCAACCGACGAAAC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
15494136 AAGCCGT-GATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
317 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
15494200 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAG
382 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
15494265 ATGACTCGTTTTTTATTTTTCACGATTTTTCAAACTTTTTATGGGTCAGAATTTTTTAAAATTTT
447 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
15494330 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTGTTGGCATGCACAA
512 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
15494395 AAAAATTCAGCTAAAAGCTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
577 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15494460 TAAGACACTTTAATTGG-TACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
642 TCAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
15494524 GAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCA
706 GAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
15494589 CAACAT-TTGCGCA-A--------ACCCCTCGATCGC-CGGAACCCCGATGCCGCCGGTCAGGTT
771 CATCATGTT-CGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
15494643 CTCCGGACGATGCTCCGACAATGGTGCCCCGACGAAG-AAAATGTGGCACCAGTACATGCCCG
835 CTCC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
15494705 AGCCCAGCATGTGCTGCTGGAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* * * *
15494770 GCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCGGGCACTCAA
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** ** *
15494835 CCGGCCAGAGGGGTGGGATGCACAA-ACCGGGATC-GGCTGGGTCCCCGTCAACAGGCTGTCGAT
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTC-GGGTCCCCCTCTGCTTGCTGCCGAT
* * *
15494898 CCTTCTGCTGCAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTC-TATGCCTAAGC
195 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGC
** * * * * *
15494961 CAACAAAGGAAACGAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCTGT
259 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
15495026 GGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CTATGCCAATGCCATTTT
324 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTT
* *
15495090 TATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC--GAAGTTTCAT-GCAAGATGACT
388 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
15495152 CGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCGGGATTTCTTAAAATTATTTCGCA
453 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* ** * * *
15495217 ACGAGTTTTGGCAACAAACGTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
518 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
15495282 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
583 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
15495347 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGCGGTGTGAGTTCT
648 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
15495411 CGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATG
713 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
15495475 TGCGCACACCCCCCGGCCCACCCGATCGAT-GGAACCTCAATGCCGCCGGTCAGGTTCTCCGGCG
778 TTCGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *
15495539 ATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAGCACATGCTCG
843 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
15495593 AGCCCAGCATGTGCTACCGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAAC-TCTGT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTTC-GT
*
15495656 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTC
64 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
15495721 AGTCGGCCAGAGGGGCGGAATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTACATGCTACCGA
129 AGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGA
* * *
15495786 TCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAG
194 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAG
* * *
15495850 CCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCGAGCACTATGCCGGCCAGAGAGACAGGATGC
258 CCAACCGACG-AA--A-C--G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
15495915 GTAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAAT
315 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
15495980 GCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAACGTTCACGTGAAGTTTCATGGCA
380 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
15496045 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
445 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * ** *
15496110 TTTTTGGAAGGAGTTCTAGCCCCAAACTTATTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
510 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
15496175 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCA
575 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
15496240 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTG
640 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
15496305 CGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGC
705 TGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
15496370 ACATCATGTGT-G-ACACCCCCCAGGCCCCCCCGATCGC-CGAAACCCTAATGCCGTCGATCAGG
770 ACATCATGT-TCGCACACCCCCC-GGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGG
* *
15496432 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAACGCGGCACCAGCACATGGCCG
833 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
15496496 AGCCCAGCATGTGCTACCGCAACCCTCGGTATGA-TCCGATGTTTGACTGGGAATGAAC-TCTGT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGT-TCAGTCCGATCTTAGACTGGGAATGAACTTC-GT
* * * *
15496559 GTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTC
64 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
15496624 AGTCGGCCAAAGGGGTGGGATGCGCATGTCGGGGATCGGCCAGGTCCCCCTCTGCGTGTTGCCGA
129 AGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGA
* * * * * *
15496689 TCCTGCTACCACAACCCTCGGTGTGATCTGATCTTAGACTGAGAATGAACTACGTATGCATAAGC
194 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
* * * * *
15496754 GAACTGAGGAAACGAGCGGGCGGACGGGCGGGTGGGCACTACGCCGGCTAGAGAGACGGGAAGCG
259 CAACCGACGAAACGAGC--G-GG-CGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
15496819 CAAGCCGTCGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCAAATTTCTGCATGCCAATG
316 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
15496884 CCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
381 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
15496949 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGA-GGTTCCGGATTTTTTAAAATT
446 GACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATT
* **
15497013 TTTTCGGAAGGAGTTTTGGCCCCAAACTAGGTAGACACGATCCTTGTATTTTT-TTGGCATGCAC
510 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
15497077 AAAAAAATTCTGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
575 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
**
15497142 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAA
640 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15497207 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAAGTACCAGCACCCATCG
705 TGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCG
* ** * * *
15497272 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCT-GGAACCGTAACGCCGCCGATCAGGT
769 CACATCATGTTCGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * ** * **
15497336 TCT-CTAGTGATGCTCTGACGATTGTGCCCCGGTGAAGTAAAATGTTGCACCAGCACATGCCCG
834 TCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
**
15497399 AGCCCAGCATGTGCTGCCTTAA--CTC---TC-G---G-TC-----C-----AT----TTCG-AT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* * * * *
15497439 -CTTAGATTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACAAACGTGCAGGCGCTCAG
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
15497503 CCAGCCAGAAGGGCGGGATGCCCAAGTTGGGGATCAACCGGGTCCCCCTCTGCGTGCTGCCGATC
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGATC
* * * * *
15497568 CTGCTACGGTAACCCTCAGTCTGGTCTGAT-TTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
196 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
* *
15497632 ACCGACGAAACGAGCGGGCAGGCGGGCAGGTGAGCACTATGCCGACCAGAGAGACGGGATGCGCA
261 ACCGACGAAACGAGC--G--GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
15497697 AGACGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATTTCTGCATTCCAATGCC
318 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
15497762 ATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGA
383 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
15497827 CGACTCGTTTTCTATTTTTTACGATTTTTGAAACCTTTTACGGTTC-GGATTTTTTAAAATTTTT
448 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* ** * *
15497891 TCGGAAGGAGTTCTGGCCCCAAACTTATTAGATGTGATCCTCGTATTTTTGTTGGCATGCACAAA
513 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
15497956 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGGGACCATTTGAAAAAAGTGTCCCTATTT
578 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15498021 CAGACTCTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
643 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15498086 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACA
708 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
15498151 TCAT-TTGCGCACACCCCCCGGCCCCCCCGATC-ATCGGAACCCCAATGCCGCCGGTCAGGTTCT
773 TCATGTT-CGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
15498214 CCTACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
837 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* **
15498274 AGCCCAGTATGTGCTGCCGCAA--C-C--TTC-G---G--C-----C------T--AC-TCCAAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* *
15498314 G-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAG
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
15498378 CCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTG-TGTGCTGCCGAT
131 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCT-TGCTGCCGAT
* ** * * *
15498442 CTTGCTACCGCAACCCTCAATCTGGTCT-AGTCTTTGACTGGGAATGAACTCCGTATACCTAAGC
195 CCTGCTACCGCAACCCTCGGTCTGGTCTGA-TCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
** * * * * * * *
15498506 CAATAGACAAAACGAACGGGCGGACAGACACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGT
259 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
15498571 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
324 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
15498636 ATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
389 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
15498701 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAA
454 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
15498766 GGATGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
519 GGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
15498831 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAAAAAAGTGTCTCCATTTCAGAC
583 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
15498896 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTTT
648 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
15498961 CAAGGTTTGATGAGGGATAGGGGGCCAATAT-AGGAGCCAAGTACCAGAACCCATCGCTCATAAC
713 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG-GCCAAGTACCAGCACCCATCGCACATCA-
* * * *
15499025 GGGT-GCAAACCCCCCGGCCCCCCCGATCGC-CGGAACCCCAATGCCG-CTGGTTAGGTTCT---
776 TGTTCGCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * * * *
15499084 -C--TG--GCGACGA---TGCCCCGGCGAAGAAAAATGCGGCACTAGAACATGCCAG
840 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
15499133 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAAC-TCTATA
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTC-GTA
* ** * * * *
15499197 TGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATAAAATGAGCGTCCGGTCGCCCA
65 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
15499262 GCCAGCCAGAGGGGCGGGATACGCAAG-CTGGGGATTC-GACCAGGTCCCCCTCTG-TGTGCTGC
130 GCCGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGA-TCAG-TCGGGTCCCCCTCTGCT-TGCTGC
* * * * * * * *
15499324 TGATCCTACTGCCGCAACCCTCGGTCTGGTCTAATCTTAGACTTGGAATGAACTCCATATGCTTA
191 CGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
* * * *
15499389 AGCCAACCAACGAAATGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGT
256 AGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
15499454 AAGTCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
317 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
15499519 CATTTTTATGGCTTGTAAATTCATGCAATGAT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
382 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
15499583 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAAGCTTTTGA-GGTTCGAGATTTTTTAAAATTT
447 ACGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* ** * *
15499647 TTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACACGATCCCTGTATTTTT-TTAGGCATGCAA
511 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCAC
* * **
15499711 AAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTGGTGACCATTCAAAAAAAGTGTCCCCA
575 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
15499776 TTTCAAACACTTTAATGGCTACTGGCCGCCAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTG
640 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
15499841 TGAGTTCTGGAGGTTTCATGAGGGAT-AGAGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCG
705 TGAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
15499905 CACATCATGTGT-GCACACCCCCCACGGCCGCCCCGATCGCT-GGAACCCCAATGCCGTCGATCA
769 CACATCATGT-TCGCACA-CCCCC-CGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCA
* * ** * *
15499968 GGTTCTCCGGCGGTGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCC
831 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
15500033 G
896 G
* * * * *
15500034 AGCCTAGCATGTGCTGCCACCACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTAT
1 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* *
15500099 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AGAACGAGCATGCGGGCGCTGA
66 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCA
** *
15500163 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCTG-TGTGCTGTCGA
130 GCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCT-TGCTGCCGA
* * * * * *
15500227 TCTTGCTACCGTAACCCTCGATCTAGTCTGACCTTAGACTGGGAATGAACTTCGTATGCCTATGC
194 TCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
* * *
15500292 CGACCGACAAAACGAGC-GGC-AGCGGGCACTACGCCGGCCAGAGAGACGGG
259 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
15500342 CATTACCGGT
Statistics
Matches: 8770, Mismatches: 1045, Indels: 493
0.85 0.10 0.05
Matches are distributed among these distances:
859 57 0.01
861 1 0.00
862 6 0.00
864 4 0.00
865 1 0.00
866 3 0.00
867 38 0.00
868 257 0.03
869 109 0.01
870 746 0.09
871 4 0.00
872 7 0.00
873 108 0.01
874 13 0.00
875 354 0.04
876 646 0.07
877 197 0.02
878 50 0.01
879 506 0.06
880 42 0.00
881 222 0.03
882 12 0.00
883 48 0.01
884 103 0.01
885 86 0.01
886 93 0.01
887 221 0.03
888 561 0.06
889 140 0.02
890 631 0.07
891 122 0.01
892 128 0.01
893 92 0.01
894 69 0.01
895 730 0.08
896 82 0.01
897 6 0.00
898 155 0.02
899 614 0.07
900 105 0.01
901 408 0.05
902 231 0.03
903 750 0.09
904 11 0.00
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCAGTCGGGTCCCCCTCTGCTTGCTGCCGATC
CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTC
GCACACCCCCCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
Found at i:15492528 original size:26 final size:26
Alignment explanation
Indices: 15492494--15492544 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15492484 TTTTCTATTT
* *
15492494 TTCATGATTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
*
15492520 TTCAAGATTTTTTAAAATTTTTTCG
1 TTCAAGATTTTTGAAAATTTTTTCG
15492545 CAAGCCGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.55
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGG
Found at i:15492994 original size:26 final size:26
Alignment explanation
Indices: 15492965--15493017 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15492955 TCGGTCCGAC
15492965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15492991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15493017 C
1 C
15493018 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15493886 original size:26 final size:26
Alignment explanation
Indices: 15493857--15493909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15493847 CTGGTCCGAT
15493857 CTTAGACTGCGAA-AGAACTCCGTATG
1 CTTAGACTGCGAATA-AACTCCGTATG
*
15493883 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
15493909 C
1 C
15493910 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGTATG
Found at i:15495662 original size:26 final size:26
Alignment explanation
Indices: 15495633--15495685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15495623 CTGGTCTGAT
*
15495633 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15495659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15495685 C
1 C
15495686 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15499225 original size:26 final size:26
Alignment explanation
Indices: 15499173--15499225 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15499163 CCAGTCCGAT
* *
15499173 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCACATG
* *
15499199 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCACATG
15499225 C
1 C
15499226 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:15500110 original size:26 final size:26
Alignment explanation
Indices: 15500074--15500126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15500064 CCAGTCCAAT
*
15500074 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15500100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15500126 C
1 C
15500127 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15500682 original size:375 final size:380
Alignment explanation
Indices: 15500018--15500719 Score: 988
Period size: 375 Copynumber: 1.9 Consensus size: 380
15500008 AAAAATGCGA
*
15500018 CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACCACCCTCGGTCCAGTCCAATCTTAGACTG
1 CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTG
* * *
15500083 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAACGA
66 GAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAACAA
* * * * * * * *
15500148 GCATGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCT
131 GCATGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGACCCCCT
* *
15500213 CTGTGTGCTGTCGATCTTGCTACCGTAACCCTCGATCTAGTCTGACCTTAGACTGGGAATGAACT
196 CTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGATCTAGTCTGACCTTAGACTGGGAATGAACT
* * *
15500278 TCGTATGCCTATGCCGACCGAC-AAA-A-CGAGC-GGC-AGCGGGCACTACGCCGGCCAGAGAGA
261 CCGTATGCCTAAGCCAACCGACAAAACAGCGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGA
15500338 CGGGCATTACCGGTCAGGCTCTCCGACGATGGTGCCCGAACGATAAAAAATATGG
326 CGGGCATTACCGGTCAGGCTCTCCGACGATGGTGCCCGAACGATAAAAAATATGG
* * * ** *
15500393 CACCAGCACATGCTCGAGCCTAGTATGTGCTGTCGTAACCCTCGGTCC-GATTCAATCTTAGACT
1 CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCAG-TCCAATCTTAGACT
* * **
15500457 GGAAATGAACTCCTTATGCTTAGACTGGTAATGAACTTTGTATGCCTAAGTCAACCCAC-GAAAC
65 GGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAG-AAC
* * *
15500521 AAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCATGACCCC
129 AAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGACCCC
* * * *
15500586 CTCTGCGTGCTGTCGATCTTGCTGCTGCAACCCTCGGTCT-GATCTGATCTTAGACTGGGAATGA
194 CTCTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGATCTAG-TCTGACCTTAGACTGGGAATGA
* *
15500650 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
258 ACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCGAGCGGGCGAGCGGGCACTACGCCGGCCAGA
15500715 GAGAC
322 GAGAC
15500720 AGGATGCGCA
Statistics
Matches: 283, Mismatches: 35, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
374 3 0.01
375 242 0.86
376 3 0.01
378 1 0.00
379 5 0.02
380 3 0.01
381 26 0.09
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (380 bp):
CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTG
GAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAACAA
GCATGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGACCCCCT
CTGCGTGCTGTCGATCTTGCTACCGCAACCCTCGATCTAGTCTGACCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACAAAACAGCGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGA
CGGGCATTACCGGTCAGGCTCTCCGACGATGGTGCCCGAACGATAAAAAATATGG
Found at i:15501799 original size:26 final size:26
Alignment explanation
Indices: 15501770--15501822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15501760 CTGATCCGAT
* *
15501770 CTTAGAGTGGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
15501796 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15501822 C
1 C
15501823 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15502702 original size:26 final size:26
Alignment explanation
Indices: 15502666--15502718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15502656 CCGATCCGAT
*
15502666 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15502692 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15502718 C
1 C
15502719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15505724 original size:868 final size:867
Alignment explanation
Indices: 15503653--15506092 Score: 3491
Period size: 868 Copynumber: 2.8 Consensus size: 867
15503643 GCGGGCGGGC
* *
15503653 GGGCGGGCACTACGTCGACCAGAGAGACGGAATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGTCG-CCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* * *
15503718 AGTTTAGGCACATCTTCATATTTC-AGTGTGCCAATGCCATTTTTATGGCTTGTAAATCCATACA
65 GGTTTAGGTACATCTTCATATTTCTA-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
15503782 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
129 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *
15503847 TTTGAAACTTTTTGCGATTCAGGATTTTTTAAAATTTTTTCGAAAAGATTTTTGGCCCCAAACTT
194 TTTAAAACTTTTTGAGGTTCCGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
15503912 GGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
259 GGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
15503977 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15504042 AACCTATAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
15504107 GGCTAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCC
454 GGC-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC
* * * * *
15504172 CCTGATTGCCGGATCCCCAATGCCGCCAGTTAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCC
517 CCCGA-TGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATGC-TCGACGATGGTGCCCC
* * * *
15504237 GACATAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCC
580 GAGA-AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCA
* * * *
15504302 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
644 G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGG
* * * * *
15504367 TGCTCAGTCGGCCAGAGGGGCGGGATGAGCAAGTCAAGGATCGGTCGTATCCCCCTCTACATGTT
708 CGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCAAGGATCGGTCGGATCCCCCTCTACATGCT
* * * * *
15504432 GCCAATCCTGTTGTCATAATCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCTTATACC
773 GCCAATCCTGCTATCATAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATACC
* *
15504497 TAAGCCAACCGACAAAAGGAGCGGGTGGGTGA
838 AAAGCCAACCGACAAAA-GAGCGAGTGGGT-A
* * *
15504529 GCTGGCGGGCACTACGTCGGCTAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
1 G--GGCGGGCACTACGTC-GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
* *
15504594 TGGGTTTAGGTACATCCTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
63 TGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
15504659 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTCGTTTTTTATTTTTCACGAT
128 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
15504724 TTTCAAAACTTTTT-ACGGTTCGGGATTTTTAAAAATTTTTTC-AGTAGGATTTTTAGCCCCAAA
193 TTTTAAAACTTTTTGA-GGTTCCGGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAA
15504787 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
256 CTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
15504852 TGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
320 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
15504917 AGCAAACCTGTCAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
385 AGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
15504982 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACAAATCATGTGCGCACACCCCCTGGCC
450 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * *
15505047 CCCCCGATGTCGGAACCCCAATGCTGACGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCC
515 CCCCCGATGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATGCT-CGACGATGGTGCCC
* *
15505112 CGATGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTC
579 CGA-GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
15505177 TAGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAG
643 -AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAG
* * *
15505242 GCGCTCAGCCGGCCAGAGGGGCGGGAT-ACGCAAGCC-GGAGATTGGTCGGGTCCCCCTCTACAT
707 GCGCTCAGCCGGCCAGAGGGGCGGGATGA-GCAAGCCAAG-GATCGGTCGGATCCCCCTCTACAT
* * ** *
15505305 GCTGCCGATCCTGCTATCGTAACCCTC-AGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATA
770 GCTGCCAATCCTGCTATCATAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTCCATA
* *
15505369 TGCCAAAGCCAACCGAC-GAA-A-CGAGTGGGT-
834 TACCAAAGCCAACCGACAAAAGAGCGAGTGGGTA
* *
15505399 GGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACGTC-GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* *
15505464 GGTTTAGGTGCATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAA
65 GGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** * * *
15505529 TGCCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTAACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
15505594 TTAAAACTTTTTGAGGTTCCGGAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAACCAT
195 TTAAAACTTTTTGAGGTTCCGG-ATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT
** * ** * *
15505659 GGTAGATGTGATCCTTGTAATTTTTTCACATACACAAAAAAATTCAGCCAAAAACTCGAAGTGTA
259 GGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
15505724 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
15505789 AACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
389 AACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
15505854 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * *
15505918 CGGTCGCCAGAACCCCAATGCCGTCGATCAGGTTCTCC----A-G-T----GATGGTGCCTCGAA
519 CGAT-GCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATGCTCGACGATGGTGCCCCG-A
* * * * * * *
15505973 GAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCACGTGTTGCCGCAACCCTCAGTCCGGT
582 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CAGT
* * *
15506038 CCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCAACGAAATGAGC
646 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
15506093 GGGCAGGCAG
Statistics
Matches: 1410, Mismatches: 135, Indels: 57
0.88 0.08 0.04
Matches are distributed among these distances:
857 115 0.08
858 2 0.00
862 1 0.00
863 1 0.00
864 1 0.00
867 8 0.01
868 442 0.31
869 56 0.04
870 2 0.00
872 8 0.01
873 1 0.00
875 6 0.00
876 283 0.20
877 18 0.01
878 298 0.21
879 168 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
GGGCGGGCACTACGTCGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
GTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TAAAACTTTTTGAGGTTCCGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGG
TAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
ATGCCGGAACCCCAATGCCGACGGTCAGGTTCTCCGGTGATGCTCGACGATGGTGCCCCGAGAAG
AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCAGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAGC
CGGCCAGAGGGGCGGGATGAGCAAGCCAAGGATCGGTCGGATCCCCCTCTACATGCTGCCAATCC
TGCTATCATAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATACCAAAGCCAA
CCGACAAAAGAGCGAGTGGGTA
Found at i:15506783 original size:26 final size:26
Alignment explanation
Indices: 15506754--15506806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15506744 CTGATCCGAT
*
15506754 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGATCGGCAATGAACTCCGTATG
* *
15506780 CTTAGATCGGGAATGAACTTCGTATG
1 CTTAGATCGGCAATGAACTCCGTATG
15506806 C
1 C
15506807 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGCAATGAACTCCGTATG
Found at i:15507690 original size:26 final size:26
Alignment explanation
Indices: 15507651--15507703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15507641 TCGGTCCGAT
15507651 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15507677 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15507703 C
1 C
15507704 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15508030 original size:26 final size:26
Alignment explanation
Indices: 15507994--15508046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15507984 CTGGTCCGAT
*
15507994 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAACGAACTTCGTATG
*
15508020 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGAATGGGAACGAACTTCGTATG
15508046 C
1 C
15508047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAACGAACTTCGTATG
Found at i:15508187 original size:344 final size:342
Alignment explanation
Indices: 15507550--15508209 Score: 984
Period size: 344 Copynumber: 1.9 Consensus size: 342
15507540 TGGTCAAGTT
**
15507550 CTCCGGCGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGA
1 CTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGA
* * *
15507615 CCTGCATGTGCTGCCGTAACCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
66 CCTGCATGTGCTGCCGCAACCTCGGTTCGGTCCGATCTTAGAATGGGAATGAACTCCATATGCTT
* * * *
15507680 AGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTTAGCCGC
131 AGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGTGCTTAGCCGC
* * ** *
15507745 CAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCT
196 CAGAGGGGCGGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACT
*
15507810 ACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGCATGAACTCCGTATGCCTAAGCCGCTGGT
261 ACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGCTGGT
15507875 CAGGTTCTCCGATGATG
326 CAGGTTCTCCGATGATG
*
15507892 CTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAAGACATGCCCGAG-
1 CTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGA
* *
15507956 CCTAGCATGTGCTGCCGCAACCCTCGG-TCTGGTCCGATCTTAGAATGGGAATGAACTTCGTATG
66 CCT-GCATGTGCTGCCGCAA-CCTCGGTTC-GGTCCGATCTTAGAATGGGAATGAACTCCATATG
*
15508020 CTTAGACTGGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGTAG-TTAG
128 CTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGT-GCTTAG
* * *
15508084 CCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCTGGTCCCCCTCTACGTGCTGCCGATC
192 CC-GCCAGAGGGGCGGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATC
** * * *** *
15508149 CTACTGTCGTAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAA
256 CTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
15508210 TCCAACCGAC
Statistics
Matches: 283, Mismatches: 30, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
341 3 0.01
342 78 0.28
343 95 0.34
344 107 0.38
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
CTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGA
CCTGCATGTGCTGCCGCAACCTCGGTTCGGTCCGATCTTAGAATGGGAATGAACTCCATATGCTT
AGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGTGCTTAGCCGC
CAGAGGGGCGGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTACT
ACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGCTGGT
CAGGTTCTCCGATGATG
Found at i:15508913 original size:26 final size:26
Alignment explanation
Indices: 15508884--15508936 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15508874 CCGGTCTGAT
15508884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15508910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15508936 C
1 C
15508937 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15509838 original size:26 final size:26
Alignment explanation
Indices: 15509787--15509839 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15509777 CCAGTCCGAT
* **
15509787 CTTAGACTGGGAATGAGTTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
15509813 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
15509839 C
1 C
15509840 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:15510682 original size:894 final size:888
Alignment explanation
Indices: 15507899--15513558 Score: 6859
Period size: 890 Copynumber: 6.4 Consensus size: 888
15507889 ATGCTCCGGC
* * *
15507899 GATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAAG-ACATGCCCGAGCCTAGCA
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCA
* *
15507963 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTTCGTATGCTTAGACT
65 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
15508028 GGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGTAG-TTAGCCAGCCAG
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGT-GCTCAGCCGGCCAG
* * * * *
15508092 AGGGGCGGGATGCGCAAGCCAGGGATCGACCTGGTCCCCCTCTACGTGCTGCCGATCCTACTGTC
194 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCC
* * * * * *
15508157 GTAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAATCCAACCGACGA
259 GCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
** * *
15508222 AACGAGCGGTGGGGCAGGCGGGCGGGCTTTACGCCAGCCAGAGAGACGGGATGCGCAAGTCGTGG
324 AACGAGC------G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
15508287 ATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTTT
381 ATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
15508352 GGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGT
445 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
15508416 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAAG
510 TTTCTATTTTTCATGATTTT-GAAACTTTTTGCGG-TTCAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
15508481 AATTTTGGCCCCAAACTTGGTAGATGTGATACTTGTATTTTTGTTGGTATGCACAAAAAAATTCA
573 AGTTTTGGCCCCAAAC-T-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
15508546 GCTAAAAACTCAAACTATACAACATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACT
636 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
15508610 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGTGTGTGAGTTCTCGA
701 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
15508675 GGTTTGATGAGGGATAGGGGGCCAATATCAA-GGCCAAGTACCAGCACCCATCGCACATCAAGTG
766 GGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * **
15508739 CGCACACCCCTCTGG-CCCCCCGATCATCGGAACCGCAATGTCGTTGGTCA-G------GT
830 CGCACACCCC-C-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGT
* * * * *
15508792 --T-CTCCGACGATGGTGCCTCGGCGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
15508854 GTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
66 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
15508919 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGGGTGCTCAACCGGCTAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * * * * * * * * *
15508984 GGGCGGGATACGCAAGCCGAGGATCAGCCGAGTCCCCCTTTGCGTGTTGCTGATCTTGCTACTGC
196 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
** *
15509049 AACCCTCGGTCTAGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAA
261 AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * * * * *
15509114 CGGGCAGGCGAGCGAACGGGCGGGCGCTGCACCGACCAGAGAGATGGGATGCGAAAGTCGTGGAT
326 C--G-A-GCG-G-G--CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
15509179 CGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCAATTTTTATGG
383 CGATAG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
15509244 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTT
447 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
**
15509308 TCTATTTTTCATGATTTTTTTAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAG
512 TCTATTTTTCATGA-TTTTGAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTTTCGGAAGGAG
* * *
15509373 TTTTGGCCCCAAATTTGGGT-GATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
575 TTTTGGCCCCAAA-CT--GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
15509437 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
637 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
15509502 TAATTGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAG
702 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
15509566 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
767 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
15509631 CACAGCCCCCCCGGCCACCCCGATCGTCGGAACCTCAATGCCGTCGATCAGGTTCTCAAGC
832 CACA---CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CGT
* * * *
15509692 GATGCTCCGACGATGGTGCCTCGGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * ** ** * *
15509757 GTGCTATCGCAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAGTTCCATATGCTTACACTG
66 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
15509822 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * *
15509887 GGGCAGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGC
196 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
* * * *
15509952 AATCCTCAGTCTAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
261 AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
*
15510017 CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGA
326 CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-
** *
15510082 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCTTTTTTATGGCTTGTAAA
390 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
15510147 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
455 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* **
15510212 TCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTGTCGGAAGGAGTTTTCACC
520 TCATGATTTT-GAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
15510277 CCAAAC-ATAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAACAAATTCAGCTAAAAATTGG
583 CCAAACTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
** *
15510341 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTTAATGGCTTCT
648 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
15510406 GGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
713 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
15510471 GATAGGGGGCCAATGTAAGGGCCAAGTACCTGCACCCATCGCACATTATGTGCACACATCCCCCA
778 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC-
* * *
15510536 CCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGT
840 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GT
* * * * * *
15510586 GAGGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCACAAGCCCGAGCCTAGCA
1 GATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * * * *
15510650 TGTGCTGTCGTAACCCTCGGTCCAGCCCGATCTTGGACTGGGAATGAACTCCATATGCTTAGACC
65 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
15510715 GGGAATGAACTCTGTATCCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAAA
130 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * * * * *
15510780 GGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTGCTCCTCTACGTGCTGTCGATCATGCTGCCA
195 GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCG
* * * *
15510845 CAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGA
260 CAACCCTCGGTCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * *
15510909 AACGAGCGGGCGGGCGGGCGGGCGGGTGGGCAATACACCAGCCAGAGAGACGGGATGCACAAGCC
324 AACGA--------GCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
15510974 GCGGATCGATAGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
377 GTGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * * *
15511039 TATGCCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATAGCAAGATGA--
442 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
15511102 C----TC-A-TTTTC-------T---A-TTTTT-C--AT--GA-TTTTTAAAATTCTTTT-GGAA
507 CGTTTTCTATTTTTCATGATTTTGAAACTTTTTGCGGTTCAGATTTTTTAAAATT-TTTTCGGAA
** * *
15511143 GGAGTTTTTTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATT
571 GGAGTTTTGGCCCCAAAC-T-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
15511208 CAACTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
634 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
15511273 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTT
699 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
15511338 GAGGTTTGAAGAGGGATAGAGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
764 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
15511403 GCGCACACCCCCGGCCCCCCCGAACGTCGGAACCCCAATGTCACCGGTCAAGTTCT-C--
829 GCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGT
* ** * * **
15511460 --TG----G-CGATGGTGCCCCGACGAAGAAAAATACAACGCCAACACATGCTTGAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * *
15511518 GTGCTGCCGCAACCCTAAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGATTG
66 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
15511583 GGAATGAACTCTGTATGCCTAACTCAACCCATGAAATGAGCATACGGGTGCTCAGTCAGCCAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * * * * *
15511648 GGGCGGGATGTGAAAGCCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCAC
196 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
* * *
15511713 AA-CC-CAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
261 AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * * * *
15511776 CAAGTGGGCGGGCAGGCGGGCAGGCACTACGTCGACCGGAGAGATGGGATGCGCAAGCCGTGGAT
326 C----GAGC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
15511841 CAATAAGGTGGTAGGTCGGCTTAGGCACATTTTCATATTTCTGTGTGCCAATGCCATTTTTA---
383 CGAT-AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
15511903 --TG---------ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
447 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
15511957 TCTATTTTTCATGATTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCCGAAGGAGT
512 TCTATTTTTCATGATTTTGAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGT
*
15512022 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCT
576 TTTGGCCCCAAAC-T-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
15512087 AAAAACTCGAAGTGTACAAGATTTTGTGACCATATGAACAAAGTGTGCCCATTTCAGACACTTTA
639 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
** * *
15512152 ATGGCTACTAACAGCAAACCTGTAAAATCTCAAACGCTCTTTAA-GGGGTGGTGAGTTCTCAAGG
704 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGG
*
15512216 TTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTGTGC
768 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
15512280 ACACCCCCCGGCCCCCCCGATTGTCGAAACCCCAATGTCGCCGGTTAGGTTCTCCGGC
833 ACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GT
* *
15512338 GATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
15512402 GTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGGATAAACTCCATATGCTTAGACTG
66 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
15512467 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* ** * * * * * *
15512532 GGGCAGGATGCGCAAGCTAGGGATTGGTCGGGTCCCCCTCTAAGTGCTGTCGATCCTGTTGCCAC
196 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
* *
15512597 AA--C-C---C---T----T-TTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGATGAAA
261 AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * * * * * *
15512648 CGAGCGGGGGCGGGCGGGCGGGCAGC-ACGTCGGCTAAAGAGATGAGATACGCATGCTGTGGATC
326 CGA------GCGGGCGGGCGGGCA-CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
15512712 GATAGGGTGGTAGGTGGGTTTCA-GTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
384 GATA-GGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
15512776 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTT
447 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
15512841 TCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTGAAAA-TTTTTCGGAAGGAG
512 TCTATTTTTCATGA-TTTTGAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTTTCGGAAGGAG
* ** *
15512905 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATCCTTCTTGGCATGCACAAAAAAATTCAGC
575 TTTTGGCCCCAAAC-T-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
15512970 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
638 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
15513035 AATTGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
703 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
15513100 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
768 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
15513165 ACACCCCTCGGGCCCCCCGATC-ACGGAACCCCAATGCCGTCGGTAAGGTTCTCCGGT
833 ACACCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GT
* *
15513222 GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCAT
1 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
15513287 GTGCTGCCGTAACCCTCGATCTTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
66 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
15513352 GGAATGAACTCCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGGTCAGTCGGCCAGAG
131 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
* * * * * * *
15513417 AGGC-GGATGCGTAAGCCGAGGATCGGCCGGGTCCCCTTTTGCGTGCTGCTGATCCTGCTGCCGC
196 GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
* * *** * *
15513481 AACCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
261 AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
*
15513546 CGAGCGTGCGGGC
326 CGAGCGGGCGGGC
15513559 ACTCAGCCGT
Statistics
Matches: 4129, Mismatches: 486, Indels: 305
0.84 0.10 0.06
Matches are distributed among these distances:
848 43 0.01
850 1 0.00
854 2 0.00
855 1 0.00
856 5 0.00
857 2 0.00
861 39 0.01
862 51 0.01
863 2 0.00
865 59 0.01
866 4 0.00
867 216 0.05
868 2 0.00
869 2 0.00
870 92 0.02
871 2 0.00
872 45 0.01
873 47 0.01
874 262 0.06
875 3 0.00
877 2 0.00
878 69 0.02
879 9 0.00
880 2 0.00
881 222 0.05
882 1 0.00
883 2 0.00
884 592 0.14
885 255 0.06
886 2 0.00
887 2 0.00
888 2 0.00
889 8 0.00
890 630 0.15
891 100 0.02
892 41 0.01
893 159 0.04
894 407 0.10
895 147 0.04
896 88 0.02
897 8 0.00
898 47 0.01
899 5 0.00
900 2 0.00
901 1 0.00
902 11 0.00
903 284 0.07
905 106 0.03
906 45 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (888 bp):
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGC
AACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CATGATTTTGAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCC
CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGT
Found at i:15511578 original size:26 final size:26
Alignment explanation
Indices: 15511549--15511599 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15511539 TGGTCCGATC
15511549 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
15511575 TTAGATTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15511600 CCTAACTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:15512468 original size:26 final size:26
Alignment explanation
Indices: 15512432--15512484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15512422 CTGGTCCGAT
*
15512432 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
15512458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
15512484 C
1 C
15512485 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15513353 original size:26 final size:26
Alignment explanation
Indices: 15513317--15513367 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15513307 CTTGTCCAAT
15513317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15513343 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15513368 CCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15513671 original size:159 final size:158
Alignment explanation
Indices: 15513343--15513717 Score: 455
Period size: 159 Copynumber: 2.4 Consensus size: 158
15513333 ACTCCGTATG
* * * ** *
15513343 CTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGGTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
** * * * *
15513408 CGGCCAGAGAGGCGGATGCGTAAGCCGAGGATCGGCCGGGTCCCCTTTTGCGTGCTGCTGATCCT
66 CGGCCAGAGAGGCGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
15513473 GCTGCCGCAACCCTTGGTCTGGTTTGAT
131 GCTGCCGCAACCCTCGGTCTGATTCGAT
*
15513501 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * *
15513566 CGTCCAGAGGGGCGGGATGCACAATCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGAGGC-GGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
15513631 TGCTGTTGTAACCCTCGAT-TCGATTCGAT
130 TGCTGCCGCAACCCTCGGTCT-GATTCGAT
* * * * * *
15513660 CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGTGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
15513718 GGGCACTACG
Statistics
Matches: 184, Mismatches: 31, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
158 70 0.38
159 114 0.62
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGGCCAGAGAGGCGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCTGATTCGAT
Found at i:15514399 original size:26 final size:26
Alignment explanation
Indices: 15514370--15514422 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514360 CCGGTCCGAT
*
15514370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15514396 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15514422 C
1 C
15514423 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15515295 original size:26 final size:26
Alignment explanation
Indices: 15515259--15515311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15515249 CCAGACCGAT
* *
15515259 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15515285 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15515311 C
1 C
15515312 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15515357 original size:888 final size:888
Alignment explanation
Indices: 15513501--15515543 Score: 3080
Period size: 888 Copynumber: 2.3 Consensus size: 888
15513491 CTGGTTTGAT
* * * * *
15513501 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * **
15513566 CGTCCAGAGGGGCGGGATGCACAATCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCACAATCCGGGGATCGGTC-GGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
15513631 TGCTGTTGTAACCCTCGAT-TCGATTCGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
130 TGCTGCTGCAACCCTCGGTCT-GATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
15513695 ACCGACGAAACGTGCGGGCGGGCGGGCACTACGCCAACTAGAGAGACGGGATGTGCAAGCCGTGG
194 ACCGACGAAA----CGAGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
15513760 ATCGATAGGGTGATAGGTGGGTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
255 ATCGATAGGGTGATAGGTGGGTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
15513825 GCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACACAAAGTTTCATGGCAAGACGACTCGTT
320 GCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACACAAAGTTTCATGGCAAGACGACTCGTT
* * *
15513890 TTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTTATATTTTTTCAAAACG
385 TTCTATTTTTCACAATTTTTGAAACTTTTTACAG-T-GAGATTATTTTAAAATTTTTTCAAAACG
15513955 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
448 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
15514020 GCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACACT
513 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
* *
15514085 TTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
578 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
15514150 TGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
643 TGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
15514215 GCGCACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGATGC
708 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGC
*
15514280 TCCGACGATGGTGCCCCGACGAAGAAAATTACGGCACCAGCACATGCCCGAGCCCAGTATGTGCT
773 TCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGCT
** * *
15514345 ACTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
838 ACCACAACCCTCGATCCAGACCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15514396 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATACGGGCGCTTCAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGC-TCAG
* *
15514461 TCGGCCAGAGGGGCAGGATGCACAATCCGGGGATTGGTCAGGTTCCCCTCTGCGTGCTGCCGATC
65 TCGGCCAGAGGGGCAGGATGCACAATCCGGGGATCGGTC-GGTCCCCCTCTGCGTGCTGCCGATC
* *
15514526 CTGTTGCCT-CAACCCTTGGTCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAAG
129 CTGCTG-CTGCAACCCTCGGTCTGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCT-AAG
* *
15514589 -CAACCGACGAAACGAGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGA
191 CCAACCGACGAAACGAGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
15514653 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
256 TCGATAGGGTGATAGGTGGG-TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* ***
15514718 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
320 GCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACACAAAGTTTCATGGCAAGACGACTCGTT
* * * *** * *
15514783 TTCTATTTTTCACCATTTTTGGAACTTTTTAC-G-GGGA-TATTTTAAAATTTTTTTGGAAGGAT
385 TTCTATTTTTCACAATTTTTGAAACTTTTTACAGTGAGATTATTTTAAAATTTTTTCAAAACGAG
* ** * *
15514845 TTTTGGCCCCAAACTTGGTAGACGTGATTGTTGTATTTTTGTTGGCATGCACAAAACAATTTAGC
450 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
15514910 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
515 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
*
15514975 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATG
580 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATG
15515040 TTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
645 TTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
15515105 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCT
710 ACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCT
**
15515170 CCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCT-TGTGCT
774 CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG-TATGTGCT
* *
15515234 ACCACAACCCTC-AGTCCAGACCGATCTTAGATTGGGAATGAACTTCGTATG
838 ACCACAACCCTCGA-TCCAGACCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15515285 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACAAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * ** *
15515350 TGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTATGTGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCACAATCCGGGGATCGGTCG-GTCCCCCTCTGCGTGCTGCCGATCC
* *
15515415 TGCTGCTGCAACCCTCGGCCTGATTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
130 TGCTGCTGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
15515480 CCCACGAAACGAGCGTGCAGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
195 CCGACGAAACGAGCGGGCAGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
15515544 GCCAGGCCCC
Statistics
Matches: 1040, Mismatches: 94, Indels: 35
0.89 0.08 0.03
Matches are distributed among these distances:
887 7 0.01
888 434 0.42
889 221 0.21
890 1 0.00
892 64 0.06
893 134 0.13
895 56 0.05
896 118 0.11
897 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCAGGATGCACAATCCGGGGATCGGTCGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTGCTGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGATAGGTGGGTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATAGTCCCTTAAGCCTTCACACAAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACAATTTTTGAAACTTTTTACAGTGAGATTATTTTAAAATTTTTTCAAAACGAGTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATGTTTGAT
GAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACGA
TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCACAAC
CCTCGATCCAGACCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15515574 original size:159 final size:159
Alignment explanation
Indices: 15515285--15515652 Score: 474
Period size: 159 Copynumber: 2.3 Consensus size: 159
15515275 ACTTCGTATG
* * * ** *
15515285 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACAAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
15515350 TGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTATGTGCTGCCAATCC
66 CGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGTCCAGGCCCCCTCTATGTGCTACCAATCC
* *
15515415 TGCTGCTGCAACCCTCGG-CCTGATTCGAT
131 TGCTGCCGCAACCCTCGGTCC-GATCCGAT
*
15515444 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
15515509 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CCAGGCCCCC-CTCTGCCTGCTACCGAT
66 CGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGTCCAGGCCCCCTCTATG--TGCTACCAAT
* *
15515572 CCTGCTGCCGCAACTCTCGGTCCGGTCCGAT
129 CCTGCTGCCGCAACCCTCGGTCCGATCCGAT
* * * *
15515603 CTTAGACTAGG-ATCAACTCCGTATACCTAAGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
15515653 GGCGGGCGGG
Statistics
Matches: 182, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
157 4 0.02
158 43 0.24
159 133 0.73
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGAGGCAGGATGCGCAAGCCGGGGATCGGTCCAGGCCCCCTCTATGTGCTACCAATCC
TGCTGCCGCAACCCTCGGTCCGATCCGAT
Found at i:15518091 original size:26 final size:26
Alignment explanation
Indices: 15518062--15518114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15518052 CCGATCTGAT
* *
15518062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
*
15518088 CTTAGACTGCGAATAAACTCTGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
15518114 C
1 C
15518115 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGTATG
Found at i:15518504 original size:903 final size:878
Alignment explanation
Indices: 15515440--15520146 Score: 6061
Period size: 885 Copynumber: 5.3 Consensus size: 878
15515430 CGGCCTGATT
* * * *
15515440 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * * *
15515505 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGCCCCCCTCTGCCTGCTACCG
66 CAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * *
15515570 ATCCTGCTGCCGCAACTCTCGGTCCGGTCCGATCTTAGACT-AGGATCAACTCCGTATACCTAAG
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
* * * * **
15515634 CCAACCGACG-AAA-CGAGCGGGCGGGCGGGCGGGTACTACGTCAGCCAGAGAGGTGGGATGCGC
196 CCAACCGACGAAAAGCGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
15515697 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAACGC
261 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTAT--GTGCCAATGC
* *
15515762 CATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTCAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
15515827 ACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* *
15515892 TTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTA-TTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
15515955 AAGAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15516020 TCTGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
15516085 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAT
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
15516150 ATCATGTGTGCACA-CCCCCGGCCCCCCCGATCGTCGAAAACCCAACGCCGTCGGTCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
15516214 CGACGATGCT-TCGCCAATGGTGCCCCGGTGAAGAAAAATGCGGCACCAACAAATACCTGAGCCC
779 CGACGATGCTCT-GGCGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
*
15516278 AGCATGTCCTACCGCAACCCT-TGA-T-CTG-G-TC
843 AGCATGTGCTACCGCAACCCTCTGATTGCTGTGCTC
* * * * * *
15516309 CGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGAGCC
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * *
15516374 CTGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCA
66 CAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * *
15516439 ATCCTGCTGCCGCAACCATCGGTTCGGTCTGATCTTAGACTG-GAATGAACTCCGTATGCCTAAA
131 ATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
* * * * *
15516503 CCAACCGACG-AAA-CGAGCGGGCGGGCGTG-GGGCAATACGCGGGCAAGAGAGACGGGATGCGC
196 CCAACCGACGAAAAGCGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
15516565 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGC
261 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--TTTATGTGCCAATGC
* * * *
15516630 CATTTTTATTGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTTAAGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
15516695 ATGACTCGTTTTCTATTTGTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* *
15516760 TTCGAAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
15516825 AAAAATGCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
15516890 TCAGACACTTTAATGGCTATTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
15516955 AGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTATCAGTACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
**
15517020 ATCATGTGCGCACACCCCCCTCCTCACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
714 ATCATGTGCGCACA--CCCC-CC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
15517085 TCT-CTAGCGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGTGGCACCAACACATGCCCA
775 TCTCCGA-CGATGCTCTGGCGATGGTGCCCCGGA-GAAGAAAAATGCGGCACCAACACATGCCCG
* * * *
15517148 AGCCCAACATGTGCTGCCACAACCCTC-G-GT-CTGT--TC
838 AGCCCAGCATGTGCTACCGCAACCCTCTGATTGCTGTGCTC
* * * *
15517184 CGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGGGTGCT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * *
15517249 CAGCCGGCCAGAAGGA-CGGGATGCGCAAGCCGGGGAACGGTCGGGTCCCCCTCTGCATGTTGCC
66 CAGCCGGCCAG-AGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * *
15517313 GATCTTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTCAGAATGAACTCTGTATGCCTAA
130 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAA
* * * * * **
15517378 ACCATA-CGAC-AAAA-CGAGCGGGCGGGCGGGCGGGCATTAGGCCGGCCAGAGAGATGGGATTT
195 GCCA-ACCGACGAAAAGCGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
15517440 GCAAGCCGTGGATCAATAGGGTGGTAGGTTGGTTTAGGCACATCTTCACATTTCTGGATTCCAAT
259 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTAT-G-TGCCAAT
*
15517505 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
15517570 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTACAATT
387 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
*
15517635 TTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
15517700 AAAAAAATGCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
15517765 TTTCAGACACTTTAATGGCTACCGGTAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
15517830 TGAGTTCTCAAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
15517895 ACATCATGTGCGCACACCACCCCGACCCCCCCGATCGTCGGAACCGCAATGCCACCGGTCAGGTT
712 ACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * * *
15517960 CTCCGACGATGCTCTGGCGATGGTGCCCCGGAGAAGAAAAATACGACCCCAACACATGCTCGAGC
776 CTCCGACGATGCTCTGGCGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAACACATGCCCGAGC
*
15518025 CCAGCATGTGCTGCCGCAAGACTCGGTCCGATCTGATCTTAGACTGGGAATGAACTC
841 CCAGCATGTGCTACCGC-A-A--C---CC--TCTGA--TT-G-CT--G--TG--CTC
* * * * * *
15518082 CGTATGCTTAGACTGCGAATAAACTCTGTATGCCTAAGTCAGCCCACGAAACAAGCGTGTGGGTG
1 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * * *
15518147 CTCAACCGGCCAGAGGAGTGGGATGCGCAAGTCGGGGATCGGT-GGGTCCCCCTCTGCATGCTGT
64 CTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
*** *
15518211 CGATCCTGCTATTGCAACCCTCGGTCCGGTCCGATCTTACACTGAGAATGAACTCCGTATGCCTA
129 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTA
* * *
15518276 AGCCAACCTACGAAACGAGCGAGCGGGCAGGCGGGCGGGCACTACGCTGGCTAGAGAGACGGGAT
194 AGCCAACCGACGAAA--AGCGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** * * *
15518341 GCGCAAAACGTGTATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTATGCATGCCA
257 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATG--TGCCA
* *
15518406 GTTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
320 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
15518471 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAA
385 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * *
15518536 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTTGCAGACGTGATCCTTGTATTTTTGTTGGCATGC
450 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
15518601 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
515 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
15518666 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
15518731 TGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
645 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * **
15518796 GCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCATCGGAACCACAATGTTGTCGGTCAGGT
710 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* *** * *
15518861 TCTCCGATGATGCTCCAACGATTGTGCCCC-GATGAAGAAAAATGTGGCACCAACACATGCCCGA
775 TCTCCGACGATGCTCTGGCGATGGTGCCCCGGA-GAAGAAAAATGCGGCACCAACACATGCCCGA
* *
15518925 GCCCAGCATGTGCTACCACAACCCTC--ATT-CCG-G-TC
839 GCCCAGCATGTGCTACCGCAACCCTCTGATTGCTGTGCTC
* *
15518960 TGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * *
15519025 CAGCCGGCCAGAAGGA-CGGGATGCGTAAGCCGGGGAACAGTCGGGTCCCCCTCTGCGTGCTGTC
66 CAGCCGGCCAG-AGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* ** * * * *
15519089 GATCCTACTATCACAACCCTCAGG-CTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
130 GATCCTGCTGCCGCAACCCTC-GGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTA
* * * *
15519153 AGCCGACCGACGAAACAAGCAGGCTGGCGGGCGGACGGACGGGCAGGCACTATGCCGGCCAGAGA
194 AGCCAACCGACG-AA-AAGC--G--AGCGGGC--A-GG-CGGGCGGGCACTACGCCGGCCAGAGA
* * *
15519218 GACGGGATGCACAAGCCGTGGATCGATAAGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCT
249 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-T
15519283 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
312 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
15519348 TTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATT
377 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATT
* *
15519413 TTTTACAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
442 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
15519478 TGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
507 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
15519543 GGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
572 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
15519608 TGAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGG
637 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
15519673 CACCCATCGCACATCATGTGCGCACAACCCCCGGCACCCCCGATCGCCGGAACCCCAATTCTGTC
702 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC
* * * * * * *
15519738 GGTCAGGTTCTCCGACGATGCCCTGGTGACGGTGCCTCGGCGAAGAAAAATACAGCACCAACACA
767 GGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAACACA
*
15519803 TGCCCGAGCCCAGTATGTGCTACCGCAACCCTCAGTCCGGTTTGATCTTAGACTAAGAATGAACT
832 TGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C----TGA--TT-G-CT--G--TG--CT
15519868 C
878 C
* * *
15519869 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAATGAGTGTGCGGGTG
1 CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * * * * ** *
15519934 CTCGGTCGACCAGAGGGGCGGGATGTGCAAGCTGGGGATCGACCGGGTCTCCCTCTGCGTGCTGC
64 CTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * ** * * * * * *
15519999 CAATCTTACTGTCGCAACGTTTGATCCGATCCTATCTTAGACTGGGAATGAACTTCGTATGCCTA
129 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTA
* * * * *
15520064 AGCCAACCAAC-AAAA-CGAGCGGGCAGGCAGGCTGGCGAGCACTATGCCGGCTAGAGAAACGGG
194 AGCCAACCGACGAAAAGCGAGCGGGCAGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
15520127 ATGCACGAGCCGGGGATCGA
255 ATGCGCAAGCCGTGGATCGA
15520147 CCAGGTCCCC
Statistics
Matches: 3360, Mismatches: 370, Indels: 182
0.86 0.09 0.05
Matches are distributed among these distances:
868 200 0.06
869 233 0.07
870 215 0.06
873 3 0.00
874 109 0.03
875 268 0.08
876 138 0.04
877 553 0.16
878 8 0.00
879 2 0.00
881 9 0.00
883 3 0.00
884 4 0.00
885 576 0.17
886 6 0.00
887 6 0.00
889 3 0.00
890 3 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 8 0.00
899 89 0.03
900 91 0.03
901 6 0.00
902 107 0.03
903 534 0.16
905 1 0.00
906 1 0.00
907 1 0.00
908 2 0.00
909 5 0.00
910 6 0.00
911 162 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (878 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
CAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
ATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAAAGCGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
ACGATGCTCTGGCGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
ATGTGCTACCGCAACCCTCTGATTGCTGTGCTC
Found at i:15519878 original size:26 final size:26
Alignment explanation
Indices: 15519849--15519901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15519839 CCGGTTTGAT
15519849 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
15519875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
15519901 C
1 C
15519902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:15522631 original size:26 final size:26
Alignment explanation
Indices: 15522595--15522647 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15522585 CCGGTCCGAT
15522595 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15522621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15522647 C
1 C
15522648 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15523536 original size:26 final size:26
Alignment explanation
Indices: 15523497--15523549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15523487 CCAGCTCGAT
*
15523497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15523523 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15523549 C
1 C
15523550 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15524517 original size:832 final size:833
Alignment explanation
Indices: 15522912--15529057 Score: 3820
Period size: 900 Copynumber: 7.0 Consensus size: 833
15522902 AGTGGGTTTA
* *
15522912 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
15522977 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCAAAA
66 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
*** * * * *
15523042 CTTTTTGTAGTTCAGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGAT-CCAAACTTGTTAGA
131 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG-TCCCAAACTTGGTAGA
*
15523106 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
195 CGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
15523171 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAAACC
259 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
15523236 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCC
324 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
15523301 AATATAAGGGCCAAGTACCAGCTCCCAACGCACATCCTGTGCGCACACCCCCCGGCCCCCCCGAT
389 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
* * * * * * *
15523366 CGTCGGAACCCCAATACCGCCGGTCAGGTTCT-CAAGCAATGCTCCGACGATGGTGCCCTGGCAA
454 CGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGA
** * ** *
15523430 AGAAAAATGCGGCACCAGCACATG-CCAAGCCCAGCATGTGCTATCGTAACCCTTAGTCC-AGCT
518 AGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATC-
* *
15523493 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCA
582 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * * *
15523558 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGGCAGAGGGGCGGGATGTGCAAGCCGGGGATCG
647 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * * * *
15523623 GTCGGGTCCCCCTCTGCGTGTTGTCGATCCTGCTGCCGCATCCCTCAGTCCGGTCTGATCTTATA
712 GCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGA
15523688 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
777 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
*
15523745 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
15523810 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTCAAAA
66 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * ** * * *
15523875 CTTTTTACGGTTCGGGATTTTTTAAAATTTATTCGGAAGGATTTTTGGTTGCAAACTTTGAAAAC
131 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTAGAC
*
15523940 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
196 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15524005 TTTGTGACCATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTG
261 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15524070 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAA
326 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
15524135 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTTCGCACACCCCCCGACCCCACCGATTG
391 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
* * * * * * *
15524200 CCAGAACCCCAATGCCGTCGGTCTGGTTCTCCGACGATGCTCTGGCGATGGGGCCCAGACGAAGA
456 TCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * *
15524265 AAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGAT
521 AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGAT
* * *
15524330 CTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CATACGCCTAAGTCAACAC
586 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * ** *
15524394 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATGCCCAAGAAGGGGATCAGCCG
651 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCG
* * * ** * *
15524459 GGTCCCCCTCTGCGTGCTGCCGATCTTGTTGTTGCAACCCTTAGTCCGGTCCGATCTTAGACTAG
716 GGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGG
* * * *
15524524 GAATGAACTCTGTATGCCTAAGCCAACTGAGGAAACGAGTGAGCGGGCGGGCG
781 GAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
* * *** * *
15524577 GGCAGGCATTACGTCGACCAGAGAGAC-GGGATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGT
1 GGCA--CA-T-C-T---TCATA-TTTCTGCG-TGC-CAATGCC----AT---T----T-TTA--T
* *** * * * * *
15524640 GGGTT-TAGGCACATCTTCATATTTCTGCATGCC--AATGCCATTTTTATGGCTTGTAAATTCAT
41 GGCTTGTA---A-A--TTCATA-CAATG-GTCCCTTAA-GCC---TTCA---CGTG-AAGTT--T
* * * ** ** *
15524702 ACAATGGTCCCTTAA-ACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
88 --AATGG---C--AAGA-C--GAC-T--CGTTT--T-------CTA-TTTTTCACGA-TTTTC--
* * ** *
15524766 GATTTTTGAAACTTTTTGCGTTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAA
127 -A------AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAA
** *
15524831 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAATTC-AT
185 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-
** * * *
15524895 AGTGTACAAGATTTTGTGACTGTTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATGGCTACCG
249 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
15524960 ACAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
314 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15525025 ATAGGGGGCCAATATAAGAGCCAAGTACCAGAACCCATTGCACATCATGTGCGCACACCCCCC-A
379 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGA
* * * * *
15525089 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCTGGCGATGGTG
444 CCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* ** * * *
15525154 CCTCGGTGAAGAAAAATGAGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
509 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * *
15525219 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGC
574 GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
* * ** *** * * *
15525284 CTAAGTCAACCGACAAAACGAGCGTGCGGGCGCTTTGCAAACCA-TGGGGCAGGATGTGCAATCC
639 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
** * * * * * * * **
15525348 GGGGATCGGTTGGATCCCTCTCTACGTGCTACCAATCTTGCTACCGCAACCCTC-GTCTGGTATG
704 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCG
* **
15525412 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCG
769 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
* * ****** * * * * *** * * * ** ** **
15525477 GGCGGTCA-CTACGCCGGCCAGAGAGACAGGATGCGCA-AGCTGTGGATCGATAAGGTGGTA-GG
1 GGC--ACATCTTCATATTTCTGCGTGCCA--ATGC-CATTTTTATGGCTTG-TAAATTCATACAA
* *** * *
15525539 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA-ATTCATA
60 T-GG--T---C-C--CTTAAGCCTTC-ACGTG--AA-G----TTTAATGGC----AAGA--C-GA
* * * ***
15525603 CAATGGTCCCTT-AAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATG
101 C--TCGT--TTTCTATTTTTCAC--G-A-TTT--T--CAA-A--A--C-TTTT-TA-----C--G
* * * *
15525667 ATTTTTGAAACTTATTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAA
140 ------G-------TT-C-----AGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAA
*
15525732 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAG
186 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
15525797 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
251 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
15525862 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTTTGGTGAGGGAG
316 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
15525927 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGGGTACACCCCCCG-GC
381 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC
* ** * ***
15525991 CCCCCGATCGTCGGAACCCCAATTTCG-CGGTCAGGTTCTCC-AGCGATGCTTCGGTAATGGTGC
446 CCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGC
**
15526054 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
510 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
15526119 TCCG----G-TC-----C---------A------AT-CTTAGACTGGGACTGAACTCCGTATGCC
575 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCC
* * * * * * * * *
15526158 TAACTCAACCCACGAAATGAACGTGCGGGCACTCAGCAGGGCAGAGGGGCGGGATGTGCAAGCCA
640 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * ** * * * *
15526223 GGGAT-TGACGGGTCCCCCTCTGCGTGCTACTGATCCTGCTACCGCAACCCTCGGTCCGATCTGA
705 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGA
* *
15526287 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCG
770 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
* ** * **** * * * ** *
15526351 GGCACTACGCCCGCCAGAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT-
1 GGCAC-A---TCTTCATATTTCTGCG-TGC-CAA----T-G--CCAT----TTTTA--TGGCTTG
* * * * * *
15526415 TAGGCACATCTTCATATTTCTA-CGTGCC--AATGCCATTTTTATGGCTTGTAAATTCATACAAT
47 TA---A-A--TTCATA---CAATGGTCCCTTAA-GCC---TTCA---CGTG-AAGTT--T--AAT
* * * * * *
15526477 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGCCTCTTTTTTTACTTTTCATGATTTT
91 GG---C--AAGAC--GAC-T--CGTTT--T--C--TA----TTTTTC---A-----C--GA-TTT
* * * * *
15526542 TGAAAA-TTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAACTA
125 TCAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTT
* * * * *
15526605 GGTAGACATGATCCTTGTATTTTTGTTGGCAGGCACAAAAACATTCAGCAAAAAACTTGAAGTGT
189 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
15526670 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGC
254 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
15526735 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGG
319 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
15526800 GGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCC
384 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGACCCC
* ** * * ** * *
15526865 CCCGATCGTCGGAACCCCAATTTCGTCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCT
448 CCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * *
15526930 GACGAAGAAAAATGCGGCACCAGCACATGTCCGAGCCTAGCATATGCTGCCGCAACCCTCGGTCT
513 GACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * * *
15526995 GGTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAA
578 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
* * * * * * *
15527060 GTCAAACCACGAAATGAGCGTACGGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGTAAGCCGGGG
643 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* ** * * * ** *
15527125 ATCGGTCGGGTCCCCCTCTATGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCCGGTCTGATCT
708 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCT
* *
15527190 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGTCGGAACGAGCGGGCGGGCGGGCAG
773 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC-G
** * *** * *
15527252 GCAAGCACTACGTCGACCAAAGAGAC-GGGATGCACAA-GCCGTGGATCGATAGGGTGGTAGGTG
1 G---GCAC-A--TC-TTCATA-TTTCTGCG-TGC-CAATGCC----AT---T----T-TTA--TG
* * * * **** *
15527315 GGTT-TAGGCACATCTTCAT-CATAT-TTCTGCATGCCAATGCCATTTTTATG-ACTTGTAAAT-
42 GCTTGTA---A-A--TTCATACA-ATGGTC--CCT--TAA-GCC-TTCACGTGAAGTT-T-AATG
* * * * * * *** * *** *
15527375 TC-ATAC-AATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGAC-GACT-CGCTTTCTA
92 GCAAGACGACTCGT--TTTCTATTTTTCAC--G-A-TTT--T--CAAAACTTTTTACG-GTTC-A
*** * *
15527435 TTTTTCATGATTTTCAAAACATTTTATGGTTTGGGATTTTTTAAAATTTATTTGGAAGAAATTTT
145 GGATT-----TTTT--AAA-A--TT-T--TTTCGG----------A---A----G--G-ATTTTT
* *
15527500 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCA-AAAAAACATTCAGCTAA
177 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAA
* *
15527564 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAAC
241 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
15527629 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
306 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
15527694 GATGA-GGATTA-GGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCGCAC
371 GATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * * * *
15527757 ACCCCCCG-GCCCCCCGATCGCCAGAACCCTAATGTCGTCAGTCTGGTTCTTCGACAATGCTCCG
435 ACCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* ** * *
15527821 ATGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
500 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* * *
15527886 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAAC
565 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * **
15527951 TCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGAGCGCTCAGCCGGCCAGAGGAGTGGGAT
630 TCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * *
15528016 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAG
695 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAG
* * * * *
15528081 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA-TCGACGAAAGGAGTGGG
760 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGG
**
15528145 TAGGCGGGCG
824 CGGGCGGGCG
* ** * * * * *
15528155 GGCACTACGCCGGCCAGAGATAC-GGGATGCGCAA-GCCATGGATCGATAGGGTTGTAGGTGGGT
1 GGCAC-A--TC-TTCATA-TTTCTGCG-TGC-CAATGCC----AT---T----TT-TA--TGGCT
*** * * * * *
15528218 T-TAGGCACATCTTCATATTTCTGCATGCC--AACGCCTTTTTTATGGCTTGTAAATTCATACAA
45 TGTA---A-A--TTCATA-CAATG-GTCCCTTAA-GCC---TTCA---CGTG-AAGTT--T--AA
* ** * ***** *
15528280 TGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCATTTTCTATTTTTCATGATT
90 TGG---C--AAGACGACTCGT----TTTCTAT-TTTTCACGA-T--TTTC------------A--
* * * *
15528344 TTTGAAACTTTTTACGATTC-GAGATTTTTTTAAATTTTTTCGGAAGGAATTTTGGCCCCAAACT
128 ----AAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACT
* * *
15528408 TGGTACACATGATCCTTGTATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
188 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
15528473 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAACGGCTACTGGCAG
253 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
15528538 TAAACTTGTAAAATCTCAAACGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGA-GGATTA
318 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TA
* * *
15528602 GGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGTGCACACCCCCCCGGCC
382 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACC
* * * *
15528667 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCTGGTTCTCCGACGATGCTCCGATGATGGTGCC
446 CCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
** * ** * *
15528732 CCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGAT
511 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
15528797 CC-AGTCCTATCTTAGACTGGGAATCAACTCCGTATGCTTAG-GTGGGAATGAACTCCGTATGCC
576 CCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCC
* * * * **
15528860 TAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAACCGGCCAGAGGAGTGGGATGCGCAAGCCG
640 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * *
15528925 GGGATCGACCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGTCCGGTCCGA
705 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGA
*
15528990 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-GGGCG
770 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
15529053 GGCAC
1 GGCAC
15529058 TACGTTGGCC
Statistics
Matches: 4286, Mismatches: 642, Indels: 705
0.76 0.11 0.13
Matches are distributed among these distances:
832 463 0.11
833 279 0.07
834 4 0.00
835 1 0.00
836 1 0.00
837 1 0.00
840 5 0.00
841 7 0.00
842 3 0.00
845 2 0.00
848 1 0.00
852 1 0.00
853 2 0.00
854 2 0.00
855 4 0.00
857 1 0.00
858 1 0.00
860 8 0.00
861 5 0.00
862 3 0.00
864 3 0.00
867 4 0.00
868 8 0.00
869 9 0.00
870 280 0.07
871 5 0.00
872 40 0.01
873 202 0.05
874 101 0.02
875 3 0.00
876 11 0.00
877 10 0.00
878 9 0.00
879 17 0.00
880 17 0.00
881 6 0.00
882 11 0.00
883 3 0.00
884 7 0.00
885 4 0.00
886 3 0.00
887 7 0.00
888 7 0.00
889 3 0.00
890 14 0.00
891 16 0.00
892 15 0.00
893 10 0.00
894 11 0.00
895 2 0.00
896 6 0.00
897 205 0.05
898 76 0.02
899 378 0.09
900 714 0.17
901 232 0.05
902 329 0.08
903 7 0.00
904 384 0.09
905 8 0.00
906 67 0.02
907 197 0.05
908 4 0.00
909 3 0.00
910 1 0.00
913 2 0.00
914 5 0.00
915 1 0.00
916 5 0.00
917 8 0.00
919 1 0.00
920 2 0.00
922 1 0.00
923 2 0.00
924 1 0.00
925 4 0.00
930 5 0.00
931 4 0.00
932 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (833 bp):
GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCG
TCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCG
GGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
Found at i:15525725 original size:900 final size:899
Alignment explanation
Indices: 15523745--15529370 Score: 7938
Period size: 900 Copynumber: 6.3 Consensus size: 899
15523735 CGGGCGGGCG
*
15523745 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
15523810 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTCAAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *** * * *
15523875 CTTTTTACGGTTCGGGATTTTTTAAAATTTATTCGGAAGGATTTTTGGTTGCAAACTTTGAAAAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAA-GAATTTTGGCCCCAAACTTGGTAGAC
* *
15523940 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
15524005 TTTGTGACCATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCTG
*
15524070 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
15524135 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTTCGCACACCCCCCGACCCCACCGATTG
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* * * * * *
15524200 CCAGAACCCCAATGCCGTCGGTCTGGTTCTCCGACGATGCTCTGGCGATGGGGCCCAGACGAAGA
455 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * *
15524265 AAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCGAT
520 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
15524330 CTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CATACGCCTAAGTCAACAC
585 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * ** *
15524394 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCAGGATGCCCAAGAAGGGGATCAGCCG
650 ACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGCCG
* * ** ** * *
15524459 GGTCCCCCTCTGCGTGCTGCCGATCTTGTTGTTGCAACCCTTAGTCCGGTCCGATCTTAGACTAG
715 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * * * *
15524524 GAATGAACTCTGTATGCCTAAGCCAACTGAGGAAACGAGTGAGCGGGCGGGCGGGCAGGCATTAC
780 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-GAGCGGGCGGGCGGGCGGGCACTAC
* *
15524589 GTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
842 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15524647 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
15524712 CTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
15524777 CTTTTTGCGTTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAA-GAATTTTGGCCCCAAACTTGGTAGAC
* *
15524842 GTGATCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAATTC-ATAGTGTACAAGA
195 GTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGA
** * * * *
15524906 TTTTGTGACTGTTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATGGCTACCGACAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCT
* *
15524971 GTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15525036 ATATAAGAGCCAAGTACCAGAACCCATTGCACATCATGTGCGCACACCCCCCAG-CCCCCCGATC
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * **
15525100 GTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCTGGCGATGGTGCCTCGGTGAAG
454 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * *
15525165 AAAAATGAGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGA
519 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
*
15525230 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
584 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** *** * * * *
15525295 GACAAAACGAGCGTGCGGGCGCTTTGCAAACCATG-GG-GCAGGATGTGCAATCCGGGGATCGGT
649 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCA-GAGGAGCGGGATGCGCAAGCCGGGGATCGGC
* * * * * * * * * *
15525358 TGGATCCCTCTCTACGTGCTACCAATCTTGCTACCGCAACCCTC-GTCTGGTATGATCTTAGACT
713 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
*
15525422 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCGGGCGGTCACT
778 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-G--AGCGGGCGGGCGGGCGGGCACT
* * *
15525487 ACGCCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTA
840 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15525547 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
15525612 CTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
*
15525677 CTTATTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAA-TTTTGGCCCCAAACTTGGTAGAC
* *
15525742 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGAT
195 GTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
15525807 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
260 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCTG
* * *
15525872 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTTTGGTGAGGGAGAGGGGGCCAA
325 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
15525937 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGGGTACACCCCCCGG-CCCCCCGATCG
390 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
** * **
15526001 TCGGAACCCCAATTTCG-CGGTCAGGTTCTCC-AGCGATGCTTCGGTAATGGTGCCCCGACGAAG
455 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAG
*
15526064 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-
519 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
* *
15526119 TC-----C---G---G---TCCA-AT-CTTAGACTGGGACTGAACTCCGTATGCCTAACTCAACC
584 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * *
15526168 CACGAAATGAACGTGCGGGCACTCAGCAGGGCAGAGGGGCGGGATGTGCAAGCCAGGGAT-TGAC
649 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGCC
* * * *
15526232 GGGTCCCCCTCTGCGTGCTACTGATCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTG
714 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
*
15526297 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GAGCGGGCGGGCAGGCGGGCACTACGC
779 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCGGGCACTACGC
* * * *
15526361 CCGCCAGAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
844 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15526417 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
15526482 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGCCTCTTTTTTTACTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
15526547 ATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAACTAGGTAGAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG-AAGAATTTTGGCCCCAAACTTGGTAGAC
* * * *
15526612 ATGATCCTTGTATTTTTGTTGGCAG-GCACAAAAACATTCAGCAAAAAACTTGAAGTGTACAAGA
195 GTGATCCTTGTATTTTTGTTGGC-GTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
15526676 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCT
*
15526741 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCA
324 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
15526806 ATATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACACCCTCCCGGCCCCCCCGAT
389 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGAT
** * ** *
15526871 CGTCGGAACCCCAATTTCGTCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCTGACGAA
453 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * *
15526936 GAAAAATGCGGCACCAGCACATGTCCGAGCCTAGCATATGCTGCCGCAACCCTCGGTCTGGTCTG
518 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
* * *
15527001 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAA
583 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
15527066 CCACGAAATGAGCGTACGGGCGCTCAGCCAGCTAGAGGGGCGGGATGCGTAAGCCGGGGATCGGT
648 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGC
** * * *
15527131 CGGGTCCCCCTCTATGTGCTGTCGATCCTACTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACT
713 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* * *
15527196 GGGAATGAACTCCGTATGCCTAAGCCAACTGTCGGAAC-GAGCGGGCGGGCGGGCAGGCAAGCAC
778 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGC-GG---GCAC
* * * *
15527260 TACGTCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
839 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15527321 GGCACATCTTCATCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
1 GGCACATC-T--TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
15527386 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTCTATTTTTCATGATTTTCA
63 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
15527451 AAACATTTTATGGTTTGGGATTTTTTAAAATTTATTT-GGAAGAAATTTTGGCCCCAAACTTGGT
128 AAACTTTTTACGGTTTGGGATTTTTTAAAATTT-TTTCGGAAG-AATTTTGGCCCCAAACTTGGT
15527515 AGACGTGATCCTTGTATTTTTGTTGGCGTGCA-AAAAAACATTCAGCTAAAAACTCGAAGTGTAC
191 AGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTAC
* *
15527579 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAACGGCTACTGGCAGCAA
255 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAA
*
15527644 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA-GGATTA-GG
320 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGG
*
15527707 GGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC
384 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * * * * * ** *
15527771 CGATCGCCAGAACCCTAATGTCGTCAGTCTGGTTCTTCGACAATGCTCCGATGATGGTGCCCCGG
449 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * *
15527836 TGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGG
514 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
15527901 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
579 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
15527966 CAACCCATGAAATGAGTGTGCGAGCGCTCAGCCGGCCAGAGGAGTGGGATGCGCAAGCCGGGGAT
644 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGAT
* * * *
15528031 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCAGTCTGATCTTA
709 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* * * **
15528096 GACTGGGAATGAACTCCGTATGCCTAAGCTAATCGACGAAA-GGAGTGGGTAGGCGGGCGGGCAC
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCGGGCAC
* * *
15528160 TACGCCGGCCAGAGATACGGGATGCGCAAGCCATGGATCGATAGGGTTGTAGGTGGGTTTA
839 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
15528221 GGCACATCTTCATATTTCTGCATGCCAACGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
15528286 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
15528351 CTTTTTACGATTCGAGATTTTTTTAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTACAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAA-GAATTTTGGCCCCAAACTTGGTAGAC
*
15528416 ATGATCCTTGTATTTTTGTTGGCAG-GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
195 GTGATCCTTGTATTTTTGTTGGC-GTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15528480 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AAGACACTTTAACGGCTACTGGCAGTAAACT
259 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAACGGCTACTGGCAGCAAACC
* *
15528544 TGTAAAATCTCAAACGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGA-GGATTAGGGGGC
323 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGC
* *
15528608 CAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCG
387 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* ** **
15528673 ATCGTCGGAACCCCAATGCCGTCGGTCTGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTG
451 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
15528738 AAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGATCCAGTC
516 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-
* * *
15528803 CT-ATCTTAGACTGGGAATCAACTCCGTATGCTTAG-GTGGGAATGAACTCCGTATGCCTAAGTC
580 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
15528866 AACCCACGAAATGAGCGTGCGGGTGCTCAACCGGCCAGAGGAGTGGGATGCGCAAGCCGGGGATC
645 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATC
* * * * *
15528931 GACCGGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAG
710 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAG
15528996 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GAGCGGGCGGG-GGGCGGGCACT
775 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCGGGCACT
**
15529059 ACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
840 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15529119 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCC
1 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
15529184 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
66 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* ** * *
15529249 CTTTTTGCGGTTTGGGATTTTTTAAAA-TTTTTCAAAAGGAGTTTTGGCCCCAATCTTGGTAGAC
131 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAA-GAATTTTGGCCCCAAACTTGGTAGAC
*
15529313 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
195 GTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
15529371 CTGAAAGAGC
Statistics
Matches: 4238, Mismatches: 418, Indels: 141
0.88 0.09 0.03
Matches are distributed among these distances:
870 484 0.11
871 10 0.00
872 30 0.01
873 180 0.04
874 78 0.02
875 5 0.00
877 1 0.00
878 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 2 0.00
884 1 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 1 0.00
893 1 0.00
894 1 0.00
895 1 0.00
896 4 0.00
897 425 0.10
898 279 0.07
899 367 0.09
900 889 0.21
901 222 0.05
902 446 0.11
903 3 0.00
904 397 0.09
905 6 0.00
906 66 0.02
907 328 0.08
908 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAATTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAACGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGCCGG
GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGAGCGGGCGGGCGGGCGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
Found at i:15527936 original size:26 final size:26
Alignment explanation
Indices: 15527907--15527959 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527897 CCGGTCCGAT
15527907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15527933 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15527959 C
1 C
15527960 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15530920 original size:26 final size:26
Alignment explanation
Indices: 15530884--15530936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15530874 GTTAACTTAG
*
15530884 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15530910 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15530936 G
1 G
15530937 ATCGGGTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15531114 original size:901 final size:901
Alignment explanation
Indices: 15529374--15531315 Score: 2799
Period size: 901 Copynumber: 2.2 Consensus size: 901
15529364 GAAGTGTCTG
*
15529374 AAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
1 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
* * * * *
15529439 TTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAATTTTTGGCTGAATTTTTTTTTGCATGCC
66 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* * *
15529504 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAA
131 AACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
15529569 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAA
196 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
15529634 ACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
261 ACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
* * * *
15529699 CAGAAATATGATGATGTGCCTAAACCCACCTACCGCCTATAGATCCACGGCTTGCGCATCCCGTC
326 CAGAAATATGAAGATGTGCCTAAACCCACCTACCCCCTATAGATCCACAGCTTGCACATCCCGTC
* * *
15529764 TCTCTGGCCGACAAAGTGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
391 TCTCTGGCCGACAAAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGCA
* * * * *
15529829 GTTCATTCCCAGTCTAAGCATACGAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCA
456 GTTCATTCCCAGTCTAAGCATACGAACCGAACCGACGGTTACGACAGCAGGATCGGCAGCACGCA
* * * * * *
15529894 AAGGGGGCCCCTGTCGATCCCCATCTTACGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGTACG
521 AAGGGGGACCCTGCCGATCCCCAGCTTACGCACCCCACCCCTCTGGCCAGCTGAGCACCCGCACG
** * *
15529959 CTCGTTTCATGGATTGACTTAGGCATAAGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTC
586 CTAATTTCATGGATTAACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
*
15530024 CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATTCTAGGCTCGGGCATATGCTGGT
651 CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATATGCTGGT
* *
15530089 GCCGTATTTTTCTTTCTCGGGGCACCACCGTCGGAGCATCGTCGAAGAACCAGGCCGATGGCATT
716 GCCGTATTTTTCTTTCCCGGGGCACCACCGTCGGAGCATCGTCGAAGAACCAGACCGATGGCATT
* * *
15530154 GGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATAATGTGCGATGGGTGCTGGTACT
781 GGGGTTCCGGCGATCGGGGGGACCGGGGGGGTGTACACACATAATGTGCGATGGGTGCTGGTACT
15530219 TGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACTT
846 TGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACTT
*
15530275 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
* * * * *
15530340 TTTTTTCTAATGGTCACACAATCTTGTACACTTCGAGTTTTAAGCTAAATTTTTTTGTGCATGCC
66 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
* *
15530405 AACAAAAATACAGGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
131 AACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
15530470 AAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
196 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
15530535 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGTATTGGCACG
261 ACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
*
15530599 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGT
326 CAGAAATATGAAGATGTGCCTAAACCCACCTACC-CCCTATAGATCCACAGCTTGCACATCCCGT
* * * ** *
15530664 CTCTCTGGCCGGCATAGTGCCCGCCTTCCCGCCCGCTCGCTCATTTGGTCGGTTGGCTTTGGCAT
390 CTCTCTGGCCGACAAAGTGCCCG----CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCAT
* **
15530729 ACGCAGTTCATTCCCAGTCTAAG-AT-C-AGATCGAATTGACGGTTACGACAGCAGGATCGGCAG
451 ACGCAGTTCATTCCCAGTCTAAGCATACGA-ACCGAACCGACGGTTACGACAGCAGGATCGGCAG
* * * * * ** *
15530791 CACGCAGAGGGTGACCC-GACCGATCCCCGGCTTGCGCACCCCGCCCCTCTGGCTGGCTGCGCAC
515 CACGCAAAGGGGGACCCTG-CCGATCCCCAGCTTACGCACCCCACCCCTCTGGCCAGCTGAGCAC
* * ** *
15530855 CCGCACGCTAATTTCGTGGGTTAACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAG
579 CCGCACGCTAATTTCATGGATTAACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATACAGAG
* ** * * * *
15530920 TTCATTCGCAGTCTAAGATCGGGTCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATG
644 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATA
* * * *
15530985 TGTTGGTGCCGTATTTTTC-TTCACCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACCTA-AT
709 TGCTGGTGCCGTATTTTTCTTTC-CCGGGGCACCACCGTC-GGAGCATCGTCGAAGAACC-AGAC
* * * *
15531047 CGGTGGCATTGGGGTTCCGGCGATC-GGGGGACC-GGGGGGTTTACGCACATGATGTGCGATGGG
771 CGATGGCATTGGGGTTCCGGCGATCGGGGGGACCGGGGGGGTGTACACACATAATGTGCGATGGG
* *
15531110 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
836 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACT
15531175 T
901 T
* *
15531176 AAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAACCATTAAAGTGTCTGAAATGAGGACAC
1 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
* * *
15531241 TTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAG-TGGAGTTTTTTTATGGATGC
66 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTATGCATGC
15531305 CAACAAAAATA
130 CAACAAAAATA
15531316 TAAAAGATGT
Statistics
Matches: 924, Mismatches: 106, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
900 48 0.05
901 547 0.59
902 13 0.01
903 259 0.28
904 3 0.00
905 54 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
AACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCCCCTATAGATCCACAGCTTGCACATCCCGTC
TCTCTGGCCGACAAAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGCA
GTTCATTCCCAGTCTAAGCATACGAACCGAACCGACGGTTACGACAGCAGGATCGGCAGCACGCA
AAGGGGGACCCTGCCGATCCCCAGCTTACGCACCCCACCCCTCTGGCCAGCTGAGCACCCGCACG
CTAATTTCATGGATTAACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATATGCTGGT
GCCGTATTTTTCTTTCCCGGGGCACCACCGTCGGAGCATCGTCGAAGAACCAGACCGATGGCATT
GGGGTTCCGGCGATCGGGGGGACCGGGGGGGTGTACACACATAATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACTT
Found at i:15531625 original size:26 final size:26
Alignment explanation
Indices: 15531589--15531641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15531579 GTTGACTTAG
*
15531589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15531615 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15531641 G
1 G
15531642 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15534006 original size:433 final size:433
Alignment explanation
Indices: 15533193--15534023 Score: 1306
Period size: 433 Copynumber: 1.9 Consensus size: 433
15533183 TGGTCGACTT
*
15533193 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * * *
15533258 CGAAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGAGTTGTGACAGCAAATGCTGGGCTCGA
66 CGAAGTTCATTCCCAATCCAAGATCAGACCGGACCGAGAGTTGCGACAGCAAATGCTGGGCTCGA
** * *
15533323 GCATGTGCTGGTGCTGCATTTTTCTTCCCCGGGGCACCATCGCCGGAGCATCACCAGAGAACTTG
131 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTG
* *
15533388 ATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGCGTGCGCACATGATGTGCGATGG
196 ACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGCGTGCGCACATGATGTGCGATGG
* *
15533453 GTATAGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
261 GTATAGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCC
*
15533518 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAACCATTAAAATGTCTGAAATGGGGAC
326 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAAAATGTCTGAAATGGGGAC
15533583 ACTTTTTTCCCAGACTTGCGCATCCCGCTCCTCTGGCTGGCTG
391 ACTTTTTTCCCAGACTTGCGCATCCCGCTCCTCTGGCTGGCTG
* *
15533626 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * * * * * *
15533691 CGGAGTTCATTCCTAGTCCAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGTGG-TCG
66 CGAAGTTCATTCCCAATCCAAGATCAGACCGGACCGAGAGTTGCGACAGCAAATGCTG-GGCTCG
* * * *
15533755 GGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCT
130 AGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCAGAGAACCT
* ** * *
15533820 GACCGTCGGCATTGGGGTTCCGACGATCGGAGGGGCTGGGGGGTGTGTGCACATGATGTGCGATG
195 GACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGCGTGCGCACATGATGTGCGATG
*
15533885 GGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCC
260 GGT-ATAGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCC
* * *
15533949 CCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
324 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAAAATGTCTGAAATGGGG
15534014 ACACTTTTTT
389 ACACTTTTTT
15534024 GAAATAGTCC
Statistics
Matches: 360, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
433 357 0.99
434 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (433 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CGAAGTTCATTCCCAATCCAAGATCAGACCGGACCGAGAGTTGCGACAGCAAATGCTGGGCTCGA
GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTG
ACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCAGGGGGCGTGCGCACATGATGTGCGATGG
GTATAGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAAAATGTCTGAAATGGGGAC
ACTTTTTTCCCAGACTTGCGCATCCCGCTCCTCTGGCTGGCTG
Found at i:15535451 original size:26 final size:26
Alignment explanation
Indices: 15535415--15535467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15535405 GTTGACTTAG
*
15535415 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15535441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15535467 G
1 G
15535468 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15537459 original size:26 final size:26
Alignment explanation
Indices: 15537421--15537473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15537411 CTGGTCTGAT
*
15537421 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15537447 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15537473 C
1 C
15537474 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15539014 original size:715 final size:713
Alignment explanation
Indices: 15537595--15539058 Score: 2024
Period size: 715 Copynumber: 2.0 Consensus size: 713
15537585 CAACTCTTGA
* * * * *
15537595 TCTGGTCTGATCTTAGACTGGTAATGAACTCTGTAGGCCTAAACCAACCGACGAAACGAGCGAGG
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCTCTAGGCCTAAACCAACCAACGAAACGAACGAGA
* *
15537660 CGCGGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGTATGCGCAAGCGTGATTTTCAGATAGGT
66 CGCGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGTATGCGCAAGCATGA--TTCAGATAGGT
* * * * *
15537725 GTAGTGGTGTAGGGCACATCTTTATATTCTACGTGCCGTATGCCATTTTTATTGGCTGTAAATTT
129 GTAGTGGTGTAGAGAACATCTTCATATTCTACATGCCGAATGCCATTTTTATTGGCTGTAAA-TT
15537790 TCATACAATGCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGACAAACTCATTTTCTATT
193 TCATACAATGCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGACAAACTCATTTTCTATT
*
15537855 TTTCATGATTTCAAAACTTTTTACGGTTCAGGGTTTTTTTAAAATTTTTAAGAAGGAGTTTTGGC
258 TTTCATGATTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTAAGAAGGAGTTTTGGC
*
15537920 CCGAAACTTGGTAGACGTGAATCCTTGTATTTTTTGGCATCACAAAAAAATCACGCTTAAAAAAC
323 CCCAAACTTGGTAGACGTGAATCCTTGTATTTTTTGGCATCACAAAAAAATCACGCTTAAAAAAC
* ** * *
15537985 TTCGATGTGTACAAGATTTTGTGATCATTGAAAAAAGTGTCCCCAATTTTCAGACACTTTAATGG
388 -TCGAAGTGTACAAGATTTTACGACCATTGAAAAAAGGGTCCCCAATTTTCAGACACTTTAATGG
15538050 CCTACTGGCCAGCAAAAACGTAAAAAATCTCAAATGCTCTCTAAGGGGGTGTGAACTTCTCAAGG
452 CCTACTGGCCAGCAAAAACGT-AAAAATCTCAAATGCTCTCTAAGGGGGTGTGAACTTCTCAAGG
* *
15538115 TTGATGAGGATTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCT
516 TTGATGAGGATTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCT
* * *
15538180 CACCCCCCCGATCGCCGGAACCCCATAGCCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGG
581 CACCCCCCCGATCGCCAGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATACTCCGACGATGG
* ** *
15538245 TGTCCTGACGAAGAAAAATTTGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCGGAACCCT
646 TGCCCCAACGAAGAAAAATTTGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCT
15538310 CGG
711 CGG
* * *
15538313 TCTGGTCCGATCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCAACCAACGAAACGAACG-GA
1 TCTGGTCTGATCTTAGACTGGGAATGAACTCTCTAGGCCTAAACCAACCAACGAAACGAACGAGA
* *
15538377 CG-GGCGGGCGGGCACTACGTCAGCCAGAGAGATGGG-ATGCGCCAGCCATGGA-TC-GATAAGG
66 CGCGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGTATGCGCAAG-CAT-GATTCAGAT-AGG
* *
15538438 TGGTAGGTGGGTTTA-AGAACATCTTCATATTTCTGCATGCC-AATGCCATTTTTA-TGGCTTGT
128 T-GTA-GT-GGTGTAGAGAACATCTTCATA-TTCTACATGCCGAATGCCATTTTTATTGGC-TGT
* *
15538500 AAA-TTCATACAAT-TGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GAC-GACTCATTTT
188 AAATTTCATACAATGCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGACAAACTCATTTT
** * * *
15538561 CTATTTTTCATGATTTTTTAAACTTTTTACGGTT-TGAGATTTTTTTAAATTTTTTCAGAAGGAG
253 CTATTTTTCATGA-TTTCAAAACTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTAAGAAGGAG
*
15538625 TTTTGGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCA-
316 TTTTGGCCCCAAACTTGGTAGACGTGAATCCTTGTA-TTTT-TTGGCAT-CACAAAA-AAATCAC
*
15538688 GC-TAAAAAA-TCGAAGTGTACAAGGTTTTACGACCATTTGAAAAAAGGGTCCCC-A-TTTCAGA
377 GCTTAAAAAACTCGAAGTGTACAAGATTTTACGACCA-TTGAAAAAAGGGTCCCCAATTTTCAGA
*
15538749 CACTTTAATGG-CTACTGG-CAGC-AAACCTGT-AAAATCTCAAATGCTCTCTAAGGGGGTGTG-
441 CACTTTAATGGCCTACTGGCCAGCAAAAAC-GTAAAAATCTCAAATGCTCTCTAAGGGGGTGTGA
* * * *
15538809 ACTTCTCGAGATTTGATGAGGGA-TAGGGGGCCAATATGAGGGCCAAGTGCCAGCACCCATCACA
505 ACTTCTCAAG-GTTGATGA-GGATTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
15538873 CATCATGTGCGCTCACCCCCCCGGCCCCCTCGATCGCCAGAACCCCAAAGCCACCGGTCAGGTTC
568 CATCATGTGCGCTCA------C--CCCCC-CGATCGCCAGAACCCCAAAGCCACCGGTCAGGTTC
15538938 TCCGACGATACTCCGACGATGGTGCCCCAACGAAGAAAAATTTGACACCAACACATGCTCGAGCC
624 TCCGACGATACTCCGACGATGGTGCCCCAACGAAGAAAAATTTGACACCAACACATGCTCGAGCC
15539003 CAGCATGTGCTGCCGCAACCCTCGG
689 CAGCATGTGCTGCCGCAACCCTCGG
15539028 TCTGGTCTGATCTTAGACTGGGAATGAACTC
1 TCTGGTCTGATCTTAGACTGGGAATGAACTC
15539059 CGTATGCTTA
Statistics
Matches: 669, Mismatches: 50, Indels: 57
0.86 0.06 0.07
Matches are distributed among these distances:
705 9 0.01
706 89 0.13
707 7 0.01
708 6 0.01
709 7 0.01
710 18 0.03
711 54 0.08
712 91 0.14
713 51 0.08
714 30 0.04
715 168 0.25
716 65 0.10
717 19 0.03
718 55 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (713 bp):
TCTGGTCTGATCTTAGACTGGGAATGAACTCTCTAGGCCTAAACCAACCAACGAAACGAACGAGA
CGCGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGTATGCGCAAGCATGATTCAGATAGGTGT
AGTGGTGTAGAGAACATCTTCATATTCTACATGCCGAATGCCATTTTTATTGGCTGTAAATTTCA
TACAATGCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGACAAACTCATTTTCTATTTTT
CATGATTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTAAGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGAATCCTTGTATTTTTTGGCATCACAAAAAAATCACGCTTAAAAAACTCG
AAGTGTACAAGATTTTACGACCATTGAAAAAAGGGTCCCCAATTTTCAGACACTTTAATGGCCTA
CTGGCCAGCAAAAACGTAAAAATCTCAAATGCTCTCTAAGGGGGTGTGAACTTCTCAAGGTTGAT
GAGGATTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCTCACCC
CCCCGATCGCCAGAACCCCAAAGCCACCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCC
CAACGAAGAAAAATTTGACACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
Found at i:15539077 original size:26 final size:26
Alignment explanation
Indices: 15539039--15539091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15539029 CTGGTCTGAT
*
15539039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15539065 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15539091 C
1 C
15539092 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15539982 original size:26 final size:26
Alignment explanation
Indices: 15539931--15539983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15539921 CTGGTCCGAT
* * *
15539931 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
15539957 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
15539983 C
1 C
15539984 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:15540864 original size:26 final size:26
Alignment explanation
Indices: 15540826--15540878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15540816 CCAGTCTGAT
* *
15540826 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
15540852 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
15540878 C
1 C
15540879 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:15541221 original size:895 final size:892
Alignment explanation
Indices: 15538295--15542968 Score: 5628
Period size: 892 Copynumber: 5.3 Consensus size: 892
15538285 GCCCAGCATG
* * * *
15538295 TGCTGCCGGAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTC-TATGCCTAAGCCA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCA
* * * * *
15538359 ACCAACGAAACGAAC-GG-A--CGGGCGGGCGGGCACTACGTCAGCCAGAGAGATGGGATGCGCC
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * * * *
15538420 AGCCATGGATCGATAAGGTGGTAGGTGGGTTTAAGAACATCTTCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
15538485 ATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
15538550 CGACTCATTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTT-TGAGATTTTTTTAAATTTT
260 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGA-ATTTTTTAAAATTTT
*
15538614 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * ** *
15538679 AACAATTCAGCTAAAAAATCGAAGTGTACAAGGTTTTACGACCATTTGAAAAAAGGGTCCCCATT
389 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
15538744 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
15538809 ACTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTGCCAGCACCCATCACAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * * *
15538874 ATCATGTGCGCTCA---CCCCCCCGGCCCCCTCGATCGCCAGAACCCCAA-AGCCACCGGTCAGG
583 ATCATGTGCGCACACCCCCCCCCCGGCCCCCTCGATCG--TGAAACCCAATA-CCACCGATCAAG
** * * *
15538935 TTCTCCGACGATACTCCGACGATGGTGCCCCAACGAAGAAAAATTTGACACCAACACATGCTCGA
645 TTCT-C--CG-------G-CGATGGTGCCCCGGCGAAGAAAAA-TAGGCACCAGCACATGCTCGA
* * *
15539000 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
698 GCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15539065 CTTAGACTAGGAATGAACTCCGTATGCCTCAGTCAACCAATGAAACGAGTGTACGGGTGCTCAGC
763 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * **
15539130 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGA-TCGAGTCCCCCTCTGCGTGCTGTGGATC
828 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTAG-GTCCCCCTCTGCGTGCTGCCGATC
*
15539194 T
892 C
* * * * * * * *
15539195 TGCTGCTGCAACTCT-TGATCTGGTCTGATCTTAGACTGGTAATGAACTCTGTAGGCCTAAACCA
1 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15539259 ACCGACGAAACGAGCGGACGGGCGGGCGGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* *
15539324 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
15539389 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
15539454 CAACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAATTTTT
260 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTT
** * *
15539519 TAAGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
15539584 AAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15539649 CAGACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15539714 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * *
15539779 TCATGTGCGCACACCCCCCCCGCC--CCCACAATC-ACCG-GAAA-TCAATGCCATCGATCAGGT
584 TCATGTGCGCACACCCCCCCC-CCGGCCC-C-CTCGATCGTGAAACCCAATACCACCGATCAAGT
* * * *
15539839 TCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCTCCAACAAATGC-CTGAGCCCTGCATGT
646 TCTCCGGCGATGGTGCCCCGGCGAAGAAAAATA-GGCACCAGCACATGCTC-GAGCCCAGCATGT
* ** * *
15539903 GCTGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GG
709 GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
* * * *
15539967 CAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGATGCTCAGCCAGCCAGAGG
774 -AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGG
** * * * **
15540032 GATGGAATGCGCAAGTCAAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
838 GGCGGGATGCGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
15540087 TACTACC-CTAACCCTCAGT-TCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
1 TGCTACCGC-AACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
15540150 AACCGACGAAATGAGCGGGC-GAGCGGGTGGGCGGGCACTACGCCAGCTAGATAAACGTGATGCG
64 AACCGACGAAACGAGCGGGCAG-GCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCG
* * * * *
15540214 CAAGCCGTGGAACGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATG
128 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
15540279 CCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAACCTTCACGTGAAGTTTCATGGCAA
193 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
15540344 GACGACTCCTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGCTTC-GAATTTTTTAAAATT
258 GACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG-TTCAGAATTTTTTAAAATT
* **
15540408 TTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCAC
322 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
15540473 AAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
387 AAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
15540538 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGCTA
451 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15540603 TGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
516 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
*
15540668 ACATCATGTGCACACACCCCCCCCCCGGCCCCCTCGATCGTGAAACGCCAATACCACCGATCAAG
581 ACATCATGTGCGCACACCCCCCCCCCGGCCCCCTCGATCGTGAAAC-CCAATACCACCGATCAAG
* *
15540733 TTCTCCGGCGATGGTGCCTCGGCGAAGAAAAATGAGGCACCAGCACATGCTCGAGCCCAGTATGT
645 TTCTCCGGCGATGGTGCCCCGGCGAAGAAAAAT-AGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * * *
15540798 GCTGCCGTAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATAAACTCCGTATGCTTAGACTAGG
709 GCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
* * * *
15540863 AATGAACTCCGTATGCCTAAGTCAACCCGTGAAACAAGCGTCCGGGTGCTCAGTCGGCCAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGG
* *
15540928 GCGGGATGCGTAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTGCCAATCC
839 GCGGGATGCGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTGCCGATCC
*
15540982 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15541047 CCAACGAAACGAGCGGGCAGGCGGGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAC
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* *
15541112 GACGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
15541177 TTTTCATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
15541242 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTT
261 GACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTT
* * * * * *
15541307 TGGAAGGATTTTTGACCCCAAAGTTGGTAAACGTGATCCTTGTATTTTTGTTGGCTTGCAC-AAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15541371 AATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTACA
391 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
15541436 GACACTTTAAAGGCTACTACTGGCAGCAAACCTGTAAAATATCAAATGTTCTTTAAGGGGGTGCG
456 GACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
15541501 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCGGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * * *
15541566 ATCATGTGCGCACA----CCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGT
583 ATCATGTGCGCACACCCCCCCCCCGGCCCCCTCGATCGT-GAAACCC-AATACCACC-G--A---
* * * *
15541627 TTTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAT-GCAGCACCAGCACATGCTCGA
640 --TC--AAG-TTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATAG--GCACCAGCACATGCTCGA
* * *
15541691 GCCCAG-ATGTGCTGCCACAACCCTCAATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
698 GCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
15541755 CTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
763 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
*
15541820 CGGCCAGA-------G--G-G---G-C-GGGAT-G-C----T--CCCTCTGCGTGCTGCCAATCC
828 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *
15541862 TGCTACCGCAACCC-CTGATCTATTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAATCCA
1 TGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
15541926 ATCGACGAAACGAGTGGGCA----GGCGGGCAAGCACTATGCC-GCCAGAGAGACGAGATGCGCA
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * *
15541986 AGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
15542051 ATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
15542116 CCACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCTGTTCAGGATCTTTTAAAATTTTT
260 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTT
* * * * *
15542181 TTGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCAAAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAA
* *
15542246 AAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15542311 CAGACACTTTAAAGGCTACTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
454 CAGACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
15542376 TGAGTTCTCGAGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCATGTACCCA-TACCCATCA
516 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCA
* * * * * *
15542440 CACATCATGTGCGCACGCCCCCGCCCCGGCCCCCTCGATCGCAGGAACCCCAATACCGCCGGTCA
580 CACATCATGTGCGCACACCCCCCCCCCGGCCCCCTCGATCG--TGAAACCCAATACCACCGATCA
* * *
15542505 AGTTCTCCGGCGATGCTCCGACAATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATACTC
643 AGTTCT-C--CG--G---CG---ATGGTGCCCCGGCGAAGAAAAATA-GGCACCAGCACATGCTC
* * * *
15542570 GAGCCCAGAATGTGCT------ACCGT-A-ACC--T----TC--AGTCT--G-AT----T-CG-A
696 GAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
15542610 T-CTTAGACTGGGAATGAACTCCGTACGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCA
761 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * * *
15542674 ACCGACCAGAGGGGTGGGATGTGCAAGCC-GGGATCG-GTAGGGTCCCCCTCTACGTGCTGCCGA
826 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTA-GGTCCCCCTCTGCGTGCTGCCGA
15542737 TCC
890 TCC
* *
15542740 TACTACCGTAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15542804 ACCGAC-AAA--A---TG-A-----GCGGGCGGGCACAATGCC-GACCAGAGAGATGGGATGCGA
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGCGC
* *
15542856 AAGTCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
15542921 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
15542969 GGATAGGGGG
Statistics
Matches: 3316, Mismatches: 353, Indels: 239
0.85 0.09 0.06
Matches are distributed among these distances:
856 66 0.02
857 2 0.00
858 2 0.00
859 1 0.00
863 3 0.00
864 1 0.00
865 1 0.00
866 4 0.00
868 2 0.00
869 1 0.00
870 25 0.01
871 129 0.04
872 2 0.00
873 4 0.00
874 2 0.00
875 255 0.08
876 21 0.01
877 197 0.06
878 78 0.02
879 4 0.00
880 93 0.03
881 68 0.02
882 13 0.00
883 1 0.00
886 1 0.00
887 1 0.00
888 5 0.00
889 1 0.00
890 1 0.00
891 17 0.01
892 763 0.23
893 98 0.03
894 10 0.00
895 561 0.17
896 125 0.04
899 1 0.00
900 67 0.02
901 3 0.00
902 2 0.00
903 137 0.04
904 527 0.16
905 5 0.00
906 3 0.00
907 9 0.00
908 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
ATGTGCGCACACCCCCCCCCCGGCCCCCTCGATCGTGAAACCCAATACCACCGATCAAGTTCTCC
GGCGATGGTGCCCCGGCGAAGAAAAATAGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCG
CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:15541758 original size:26 final size:26
Alignment explanation
Indices: 15541729--15541781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541719 CCGGTCCGAT
* *
15541729 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
15541755 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
15541781 C
1 C
15541782 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:15543400 original size:26 final size:26
Alignment explanation
Indices: 15543364--15543416 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15543354 CCAGTCTGAT
15543364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15543390 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15543416 C
1 C
15543417 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15543569 original size:183 final size:184
Alignment explanation
Indices: 15543156--15543573 Score: 552
Period size: 185 Copynumber: 2.3 Consensus size: 184
15543146 CATGTGCTGT
* * * *
15543156 CGCAACCCTCGGTCCTATCCGATCTTATACTGGGAATGAACTCCATATGCTTAGACTACGAATGA
1 CGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGA
* * * * *
15543221 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGG
65 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACACAACCGGCCAGAAGGGTGGG
* * * *
15543286 ATGTGCAAGCCGGGGATCGATCAGGTCCCCCTCTACGTGTTGTCGATCCTGCTAC
130 ATGCGCAAGCCAGGGATCGATCAGGTCCCCCTCTACGTGCTGTCAATCCTGCTAC
* * * **
15543341 CGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGA
1 CGCAACCCTCGGT-CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGA
* *
15543406 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTACACAACCGGCCA-AAGGG-GGG
65 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACACAACCGGCCAGAAGGGTGGG
* * * * * *
15543469 ATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCAATCCTGCTGC
130 ATGCGCAAGCCAGGGATCGATCAGGTCCCCCTCTACGTGCTGTCAATCCTGCTAC
*
15543524 TGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGCAACCCTCGGTCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15543574 CTAAGCCAAT
Statistics
Matches: 203, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
182 1 0.00
183 93 0.46
184 4 0.02
185 105 0.52
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
CGCAACCCTCGGTCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAA
CTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACACAACCGGCCAGAAGGGTGGGA
TGCGCAAGCCAGGGATCGATCAGGTCCCCCTCTACGTGCTGTCAATCCTGCTAC
Found at i:15545122 original size:26 final size:26
Alignment explanation
Indices: 15545093--15545145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15545083 CCGGTCTGAT
*
15545093 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCCTATG
*
15545119 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGAGAATGAACTCCCTATG
15545145 C
1 C
15545146 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCCTATG
Found at i:15546496 original size:894 final size:893
Alignment explanation
Indices: 15544217--15546735 Score: 3597
Period size: 894 Copynumber: 2.8 Consensus size: 893
15544207 CCGGTCTGAT
15544217 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * *
15544282 CAACCAGAAGGGTGGGAT-GTGCAAGTCGGGGATAGTTCGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGTGGGATAGT-AAACT-GGGGATAGGTCGGGTCCCCCTCTGC-TG-T--CGAT-
* * * *
15544346 CTGCTACCGTAACCCTT-GGCCTGGTCTGATCTTAGACTAGGAATGAACTCCGTTTACCTAAGCC
124 CTG--ACCGTAA-CCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** *
15544410 AACCGACGAAACGAGCAGACGGGCGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGT
186 AACCGACGAAACGAG--G-CGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGC
**
15544475 AAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
248 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
15544539 CA-TTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
313 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
* * * * *
15544603 AAAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGTGATTTTTTAAAATTTT
378 AAGACTCATTTTCTATTTTTCATGA-TTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTT
* * * * * *
15544668 TTCGGAAGGTGTTTTGGACCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCATAA
442 TTCGAAAGG-ATTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
15544733 AAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
506 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15544798 TCAGACACTTTAATGGCTACTGGCAGCAAACATATAAAATCTCAAATGCTCTTTAAGGAGGTGTG
571 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
15544863 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
15544928 ATCATGTGTGCACA--GCCCCCCGGCCCACCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTT
701 ATCATGTGTGCACACCCCCCCCCGACCCACCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTT
* ** *
15544991 CTCCGACGATGCTTCGGCGATGGTGCCTGGACGAAGCAAAATGCGGCACCAACACATGCCCGAGC
766 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * *
15545056 CTAGCATGTGCTGTCGCCACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATG
831 CCAGCATGTGATGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATG
* * * * *
15545119 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
15545184 CGGCCAGAGGGGCGGGATGAGCAAGCTGGGGTTTA-GTCGGCTCCCCCTCTGCGTGTTGTCGATC
66 CGGCCAGAGGGGTGGGAT-AGTAAACTGGGG-ATAGGTCGGGTCCCCCTCTGC----TGTCGAT-
*
15545248 CTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
124 CTG--ACCGTAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
15545313 ACCGA-TAAA--A--CGGACGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGGGCAAGC
187 ACCGACGAAACGAGGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
15545373 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATT
252 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
15545438 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTAATGGCAAGATGA
317 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGA
* *
15545503 CTCGTTTTCTATTTTTCATGATCTTTGAAACGTTTTG-TGGTTCGAGATTTTTTAAAATTTTTTC
382 CTCATTTTCTATTTTTCATGAT-TTTGAAACTTTTTGCT-GTTCGAGATTTTTTAAAATTTTTTC
15545567 GAAAGGATTATTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
445 GAAAGGATT-TTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
15545632 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
509 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15545697 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
574 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
15545762 TCTCAAGGTTTGATGATGGATAGGGGGCCAAT-TAAGGGCCAAGTACCAGCACCCATCACACATC
639 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
15545826 ATGTGCGCACACCCCCACCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
704 ATGTGTGCACACCCCC-CCCCGACCCACCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
15545891 TCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCC
768 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * *
15545956 AGCATTTGATGGT-GCAACCCTCGGTCCAGTCTGATCTTAGACTTG-GAATGAACTCTGTATG
833 AGCATGTGAT-GTCGCAACCCTCGATCCAGTCTGATCTTAGAC-TGAGAATGAACTCCGTATG
* *
15546017 CTTAGGA-TGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 CTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
15546081 CCGGCTAGAGGGGTGGGATACGTAAACTGGGGATCGGTCGGGTCCCCCTCTGC-GT-G-T-TG-C
65 CCGGCCAGAGGGGTGGGATA-GTAAACTGGGGATAGGTCGGGTCCCCCTCTGCTGTCGATCTGAC
* * *
15546141 CGTAACCTTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
129 CGTAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
15546206 AAACGAGTGGGCGGGCGGGCGGGCAGGCACTACGTCGGTCAGAGACACGGGATGCGCAAGCCGTG
194 AAACGA---GGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
15546271 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
256 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
** * **
15546336 TGGCTTGTAAATTCATACAATGGTCTTTTAAGCCTTCACATGAAGTTTCATCGCAAGGCGACTCA
321 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCA
* * * * **
15546401 TTTTTTATTTTTCATAATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATGATTTCGAAAG
386 TTTTCTATTTTTCATGATTTT-GAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * *
15546466 GAATTTTGGCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTC
450 G-ATTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
15546531 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
514 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
15546596 TTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
579 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
15546661 AGGTTTGATGAGGGATAGGAGGCCAATATAAGAGCCAAGAACCAGCACCCATCGCACATCATGTG
644 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
15546726 TGCACACCCC
709 TGCACACCCC
15546736 GGTCCGATCT
Statistics
Matches: 1451, Mismatches: 134, Indels: 71
0.88 0.08 0.04
Matches are distributed among these distances:
886 60 0.04
887 3 0.00
889 3 0.00
891 1 0.00
892 1 0.00
893 5 0.00
894 484 0.33
895 137 0.09
896 327 0.23
897 4 0.00
898 246 0.17
899 7 0.00
901 6 0.00
902 159 0.11
903 4 0.00
904 2 0.00
905 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGTGGGATAGTAAACTGGGGATAGGTCGGGTCCCCCTCTGCTGTCGATCTGACCG
TAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAAGACTCATTTTC
TATTTTTCATGATTTTGAAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTT
GGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAC
CCCCCCCCGACCCACCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGATGTC
GCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATGAACTCCGTATG
Found at i:15547426 original size:735 final size:724
Alignment explanation
Indices: 15546024--15547456 Score: 2161
Period size: 735 Copynumber: 2.0 Consensus size: 724
15546014 ATGCTTAGGA
* *
15546024 TGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCTAG
1 TGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
** * * * *
15546089 AGGGGTGGGATACGTAAACTGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGTAACCTTCAGT
66 AGGGGTGGGATACACAAACCGGGGATCGGTCGAGTCCCCCTCTGCGTGTTGCCGCAACCCTCAGT
**
15546154 TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCG
131 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCG
* * * *
15546219 GGCGGGCGGGCAGGCACTACGTCGGTCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTG
193 GGCGGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAATCGATAGGGTG
15546284 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
258 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
** * *
15546349 CATACAATGGTCTTTTAAGCCTTCACATGAAGTTTCATCGCAAGGCGACTCATTTTTTATTTTTC
323 CATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCATTTTCTATTTTTC
* * *
15546414 ATAATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATGATTTCGAAAGGAATTTTGGCCCC
388 ACAATTTTCAAAACTTTTTCCTGTTCAGGATTTTTTAAAATGATTTCGAAAGGAATTTTGGCCCC
15546479 AAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCG
453 AAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCG
*
15546544 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
518 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACT
* *
15546609 GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
583 GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTAGATGAGG
15546674 GATAGGAGGCCAATATAAGAGCCAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCGGT
648 GATAGGAGGCCAATATAAGAGCCAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCGGT
15546739 CCGATCTTAGAC
713 CCGATCTTAGAC
*
15546751 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
1 TGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
* *
15546816 AGGGGTGGGATTCACAAGCCGGGGATCGGTCGAGTCCCCCTCTGCATGCTGCCGATCCTGCTGCC
66 AGGGGTGGGATACACAAACCGGGGATCGGTCGAGTCCCCCTCTGC--G-T---G----T--TGCC
*
15546881 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
119 GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
15546946 AACGA-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCAAGCCGTGAATC
184 AACGAGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAATC
*
15547010 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
249 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * * **
15547075 TTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTT
314 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCATTTT
* * ** ** *
15547140 CTATTTTTCACGATATTT-GAAACTTTTTCC-GTTTCATTATTTTTTAAAATTTTTTCGGAAGGA
379 CTATTTTTCACAAT-TTTCAAAACTTTTTCCTG-TTCAGGATTTTTTAAAATGATTTCGAAAGGA
* * * * *
15547203 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
442 ATTTTGGCCCCAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAG
* * *
15547268 CTAAAAGCTCGAAGTGTACACGATTTTGTGACCATTTGAATAAAGGGTCCCCATTTCAGACACTT
507 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTT
* ** *
15547333 TAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAG
572 TAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAG
* * * *
15547398 GTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCA
637 GTTAGATGAGGGATAGGAGGCCAATATAAGAGCCAAGAACCAGCACCCATCGCACATCA
15547457 CGAGCACACA
Statistics
Matches: 633, Mismatches: 59, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
727 101 0.16
729 1 0.00
730 1 0.00
733 1 0.00
734 1 0.00
735 455 0.72
736 3 0.00
737 1 0.00
739 69 0.11
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (724 bp):
TGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
AGGGGTGGGATACACAAACCGGGGATCGGTCGAGTCCCCCTCTGCGTGTTGCCGCAACCCTCAGT
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGC
GGGCGGGCAGGCACTACGCCGGCCAGAGACACGGGATGAGCAAGCCGTGAATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATCGCAAGACGACTCATTTTCTATTTTTCACA
ATTTTCAAAACTTTTTCCTGTTCAGGATTTTTTAAAATGATTTCGAAAGGAATTTTGGCCCCAAA
CTTGGTAGACATGATCCTTCTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAGACACTTTAATGGCTACTGAC
AGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTAGATGAGGGAT
AGGAGGCCAATATAAGAGCCAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCGGTCCG
ATCTTAGAC
Found at i:15547635 original size:26 final size:26
Alignment explanation
Indices: 15547606--15547658 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15547596 TCGGTCCGAT
15547606 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15547632 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15547658 C
1 C
15547659 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15548961 original size:874 final size:883
Alignment explanation
Indices: 15546740--15550092 Score: 4645
Period size: 874 Copynumber: 3.8 Consensus size: 883
15546730 CACCCCGGTC
*
15546740 CGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
1 CGATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * * ** *
15546804 TCAGCCGGCCAGAGGGGTGGGATTCACAAGCCGGGGATCGGTCGAGTCCCCCTCTGCATGCTGCC
66 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCC
* *
15546869 GATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
131 AATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
15546934 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGAGCA
196 GCCAACCGACGAAACGA--TGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
15546999 AGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
15547064 ATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
15547129 CGACTTGTTTTCTATTTTTCACGATATTTGAAACTTTTT-CCGTTTCATTATTTTTTAAAATTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGA-GATTTTTTAAAATTTT
*
15547193 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
15547258 AAAAATTCAGCTAAAAGCTCGAAGTGTACACGATTTTGTGACCATTTGAATAAAGGGTCCCCATT
518 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
15547323 TCAGACACTTTAATGGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15547388 AGTTCTTGAGGTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
15547453 ATCACGAGCACACACCCCCCT-GACCCCCCGATCGCCGGAACCCCAATGTCGCCGGTC-AGGT-T
713 ATCATGTGCACACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGTAGCCGGTCAAGTTCT
**
15547515 ----C--T-C-T-GGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCC
778 CCGACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCC
15547571 AGCATGTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTAGGAATGAACT
843 AGCATGTGCTGCCGCAA-CCTCG--TCGG--CG---TT--ACTAGG-AT--ACT
* * * *
15547625 CCGTATGCTTAGACT-AGGAATGAACTCTGTATGCCTAAGTCAACCCCCGAAACGAGCGTACGGT
1 -CG-ATGCTTAGACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* **
15547689 TGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGCTTCCCCCTCTGCGTGCT
63 TGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGCT
** * *
15547754 GCCAGCCCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
128 GCCAATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
15547819 TAAGCCGACTGACGAAAC-A-AGCGAGCAGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
193 TAAGCCAACCGACGAAACGATGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
15547882 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
15547947 CATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
15548012 ACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTTCGA-ATTTTTTAAAATTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT-GAGATTTTTTAAAATTT
* *
15548076 CTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCACGCAC
452 -TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
15548140 AACAAAATTCATCTAAAAACTCAAAGTGTACAGGATTTTGTGACCGTTTGAAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
15548205 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTG
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * *
15548270 AGAGTTCTAGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTGCCAGAACCCATCAC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
15548335 ACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAACGTAGCCGGTCAAGTT
711 ACATCATGTGCACACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGTAGCCGGTCAAGTT
* ** ** * *
15548400 CTCCGACGATGCTTCGGCGATGGTGCCCTAACGAAGAAAAATATGACACCAGCACATGCCTGAGC
776 CTCCGACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGC
*
15548465 CCAGCATCTGCTGCCGCAACC-C-TC-G-G-T-CT-GG-T-CT
841 CCAGCATGTGCTGCCGCAACCTCGTCGGCGTTACTAGGATACT
* * * *
15548499 -GAT-CTTAGACTGAGAATGAACTCTGTATTCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGC
1 CGATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
*
15548562 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCTG-GTCCCCCTCTGCGTGCTGC
66 TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC-GAGTCCCCCTCTGCGTGCTGC
* ** * * *
15548626 CAATCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGCACTCCGTATGCCTA
130 CAATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
15548691 AGCCAACCGACGAAACGAGTGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
195 AGCCAACCGACGAAACGA-T-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
15548756 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
15548821 CATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
15548886 ACGACTCGCTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
* * * *
15548951 TTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCGTGCACAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
15549016 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15549081 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTT
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
15549146 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * * *
15549211 ATCATGTGTTCACACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCA-TCGATCAGGTT
713 ATCATGTGCACACACCCC-CCTGGCCCCCCCGATCGTCGGAACCCCAATG-TAGCCGGTCAAGTT
* * **
15549275 CTCCGACGACGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAATGCATG-CTCGAG
776 CTCCGACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCT-GAG
* *
15549339 CCCAGCATGTGCTGCCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
840 CCCAGCATGTGCTGCCGCAAC-CTC-GTC-G--GCG---TT--ACTAGG-AT--ACT
* *
15549396 CCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
1 CGAT--GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * * *
15549461 GGTCATCCGGCCAGAGGGGCGGGATCCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTG
64 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGCTG
* * * * *
15549526 CCGATCCTACTGCTGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
129 CCAATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
15549591 AAGCCAACCGATGAAACGAT--CAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACA
194 AAGCCAACCGACGAAACGATGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
15549654 AGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTT-TACGTGCCAAAGC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCGTGCCAATGC
* * *
15549718 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAG
323 CATTTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
15549783 ACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTCTTTGCAGTTCGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTT
* * * * *
15549848 TTCGGAAGTATTTTTGGCCCAAAACTTTGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
15549913 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
15549978 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
15550043 AGTTCTCGAGGTTTGATAAGGGATAGGTGGCCAATATAAGGGCCAAGTAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
15550093 TAGTGTCACG
Statistics
Matches: 2205, Mismatches: 205, Indels: 103
0.88 0.08 0.04
Matches are distributed among these distances:
870 182 0.08
871 5 0.00
872 1 0.00
873 5 0.00
874 481 0.22
875 107 0.05
876 2 0.00
877 2 0.00
879 4 0.00
880 2 0.00
883 1 0.00
884 466 0.21
885 39 0.02
886 6 0.00
887 5 0.00
888 184 0.08
890 1 0.00
891 5 0.00
892 2 0.00
893 1 0.00
894 3 0.00
895 3 0.00
896 59 0.03
897 446 0.20
898 5 0.00
900 2 0.00
901 186 0.08
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
CGATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
TCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCGTGCTGCC
AATCCTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGATGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
TTTTATGGCCTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCACACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGTAGCCGGTCAAGTTCTCCG
ACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGC
ATGTGCTGCCGCAACCTCGTCGGCGTTACTAGGATACT
Found at i:15555394 original size:26 final size:26
Alignment explanation
Indices: 15555358--15555410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15555348 CCAATCCTAT
*
15555358 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15555384 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15555410 C
1 C
15555411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15556284 original size:26 final size:26
Alignment explanation
Indices: 15556248--15556300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15556238 CCGGTCTGAT
*
15556248 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15556274 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15556300 C
1 C
15556301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15557558 original size:26 final size:26
Alignment explanation
Indices: 15557528--15557580 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15557518 GTTGACTTAG
15557528 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15557554 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15557580 G
1 G
15557581 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15558458 original size:26 final size:26
Alignment explanation
Indices: 15558428--15558480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558418 GTTGACTTAG
*
15558428 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15558454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15558480 G
1 G
15558481 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15559345 original size:26 final size:26
Alignment explanation
Indices: 15559309--15559361 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559299 GTTGACTTAG
15559309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15559335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15559361 G
1 G
15559362 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15559467 original size:881 final size:875
Alignment explanation
Indices: 15556961--15560095 Score: 4286
Period size: 881 Copynumber: 3.5 Consensus size: 875
15556951 ATGCCCGAGC
* * *
15556961 CCAATAGCCATTAAAGTG-TCTGAAATGGGGACACCTTTTTCAAATGGCCACAAAATATTGTACA
1 CCAATAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
15557025 CTTGGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAG
66 CTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15557090 ATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
131 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
15557155 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
196 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
15557220 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
261 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
15557285 TAGCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCTC
326 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCTC
* *
15557350 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGT
391 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGT
*
15557415 TGCGGCAGCAAGATTGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTATGCATCCCACC
456 T---GCAGC---A-T----G----CAGAGGGGGACCCGGTCGATCCCCGGCTTATGCATCCCGCC
* * * *
15557480 CCTCTGGCCGGTTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
506 ACTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
15557545 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCA
571 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
**
15557610 CATGCTGGGCTC-AGGCATGT-TCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTTAGAGC
636 CATGCTGGGCTCGA-GCATGTGT-TGGTGCCGCATTTTTCTTCA-TTGGGCACCATCG-TAGAGC
* **
15557673 ATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCG
697 ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCG
* *
15557738 CACATGATATGTGATGGGTGA-TGGTACTTGGCCCTTATTATTGG-CCCCTAT-CCTCATCAAAA
761 CACATGATGTGCGATGGGT-ACTGGTACTTGGCCCTTA-TATTGGCCCCCTATCCCTCATC-AAA
*
15557800 CCCCGAGAAACTCA-ACCCCCTTAAAGAGCATTTGAGATTTTTACAGGTTTTGC-G
823 CCACGAG-AACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGG-TTTGCTG
* * *
15557854 CCAGTAGCCGTTAAAGT-ATCTGAAATGGGG-CACTTTTTTTTTCAAATGGTCACAAAATCTTTG
1 CCAATAGCCATTAAAGTGTTCTGAAATGGGGACAC---TTTTTTCAAATGGTCACAAAATC-TTG
* * * * * *
15557917 TACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCCTGCCAAGAAAAATTACAAGAGATGCAAGTT
62 TACACTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAG-GAT-CACG-T
* * * ** *
15557982 CTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAATATCCCAAACCATAAAAGGTT
123 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* *
15558047 TCAAAAATCGTG-AAAATAGAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACG
188 TCAAAAATCGTGAAAAATA-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** * *
15558111 GACTGTTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATATGCCT
252 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
** *** * * * *
15558176 AAACCCACCTATAACCCTATCGATCTGTGGCTTGTGCATCCCGTATCTCTGGCTGACGTAGTGCC
317 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCC
* ** *
15558241 CGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-CATAAGATTGGATCG
382 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-TAAGATCAGATCA
* *
15558305 GACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTAC
446 GACCGAGGG-T-T-GCAGC---AT---------GCAGAGGGGGACCCGGTCGATCCCCGGCTTAT
* * * *
15558370 GCATCCCGCAACTCTGGCTGGTTGAGCGCCCGTACTCTCGTTTCATGGGTTGACTTAGGCATATG
496 GCATCCCGCCACTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
15558435 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
561 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * *
15558500 TGCGCCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCTCTTGGGCACCATC
626 TGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTC-ATTGGGCACCATC
* * *
15558565 GTCGAAGCATCGTTGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGTCGGGGGG
690 GTAG-AGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
15558630 GTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCGTATCCCTCA
754 GTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCA
*
15558695 TCAAACCACGAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
818 TCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15558753 CCAATAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
1 CCAATAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15558817 CTTCGAGTATTTAGCTGAATTATTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACAAAG
66 CTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15558882 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT
131 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
15558947 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTAT
196 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
15559012 ATGAATTTACAAGCCATAAAAATGGCTTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
261 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
15559077 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCACCCGCCC
326 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG----CCCGCCC
* * * *
15559142 GCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGA
387 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGA
* * *
15559207 GGGTTGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCTCTCTGGCCGG
452 GGGTTGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTATGCATCCCGCCACTCTGGCCGG
* * * *** *
15559272 ATGACCACCCACGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
517 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
15559337 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGTGTTGCGGCAGCACATGCTGGGCT
582 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * *
15559402 CGAGCATGTGTTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCGCTAGAGCGTCGTCAGAGAAC
647 CGAGCATGTGTTGGTGCCGCATTTTTCTTCATTG-GGCACCATCG-TAGAGCATCGTCGGAGAAC
* * *
15559467 CTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGCGCGCACATGATGTGCG
710 CTGACCGACGACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * *
15559531 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCATCATCAAACCTCGAGAACTCACAC
774 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACAC
* *
15559596 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTA
839 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
15559633 CTAGTAGCTATTAAAGTGTT-TCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
1 CCAATAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
15559697 CTTCGAGAATTTAGCTGAAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
66 CTTCGAGTATTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * **
15559762 GTTTGGGGCCAAAACTCCTT-CTATAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTTGAAA
130 GTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
15559826 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATT
194 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
15559891 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
259 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** *
15559956 CCTACCACCCTATCGATCCACGTTTTGCACATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGC
324 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGT----GCCCGC
*
15560021 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGAC
385 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-GAC
15560086 CGAGGGTTGC
449 CGAGGGTTGC
15560096 GGCAGCCCAT
Statistics
Matches: 2000, Mismatches: 195, Indels: 105
0.87 0.08 0.05
Matches are distributed among these distances:
880 143 0.07
881 631 0.32
882 21 0.01
885 1 0.00
890 2 0.00
892 227 0.11
893 41 0.02
894 4 0.00
895 26 0.01
896 153 0.08
897 30 0.01
898 15 0.01
899 109 0.05
900 586 0.29
901 8 0.00
902 1 0.00
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
CCAATAGCCATTAAAGTGTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTATTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGT
TGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTATGCATCCCGCCACTCTGGCCGGTTGA
GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAG
CATGTGTTGGTGCCGCATTTTTCTTCATTGGGCACCATCGTAGAGCATCGTCGGAGAACCTGACC
GACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTA
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTG
Found at i:15562518 original size:26 final size:26
Alignment explanation
Indices: 15562488--15562540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15562478 GTTAACTTAG
*
15562488 GCATACAGTGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
15562514 GCATACAGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
15562540 G
1 G
15562541 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCCAA
Found at i:15563712 original size:829 final size:833
Alignment explanation
Indices: 15562107--15563771 Score: 2437
Period size: 829 Copynumber: 2.0 Consensus size: 833
15562097 AAAAATCGTG
* * *
15562107 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGA
15562172 ATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
15562237 ACCCTATCGATCCATGGCTTGCGGATCCTGTCTCCCTGGCCTGCGTAGTGCCCGCCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGT---CGCCCGCCCGCCC
* * ** *
15562302 GCTTACTTGTTTTGTCGGTTGGCTTAGGTGTATGGAGTTAATTCCCAGTCTAAGATCAGACCAAA
193 GCTTAC-TGTTTCGTCAGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAA
* * ** * *
15562367 CTGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAAAGGCGGACCCGGCTGATCCCCGGCTTGCGC
257 CCGAGGGTTGCGAAAGCAAGATCAGCAGCACGTAAAGGCGGACCCGGCTGATCCCCGGCTTGCGC
* ** * ** *
15562432 ATCCTGCTCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGT
322 ATCCTGCCCCTCTGGCCGACTGAGCACCCAAACGCTCGTTTCATGGGTTAACTTAGGCATACAGA
*
15562497 GTTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTG
387 GTTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCAGACCAAGGGTTG
* * * * * *
15562562 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGC
452 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCATCGGGACACCATCAC
* ** * * * * * * *
15562627 CGGAGCATCGCTGGAGAACCTGTCTGGCGGCATTGGGGCTCCGACGATCGGAGGGTCGGGGGGTG
517 CAGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGCTCCGACGATCGGAGGGCCAGGGGGTA
* * * * *
15562692 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGACTCTTATTTTGGCCTCCTATCCCTCATCAA
582 TGCACACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCTATCCCTCATCAA
* *
15562757 ACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
647 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
** *
15562822 TAAAGTGTCTGAAATGGGGACTTTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
712 TAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* *
15562887 ATCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTC
777 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTC
* * *
15562944 AAAAATAGAAAACGTGTCGTCTTGCCAAGAAACTTCATGTGAAGGCATAAGGGACCATTGTATGG
1 AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGA
* *
15563009 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
15563074 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT-GCCCGCCCGCCCGC-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGTCGCCCGCCCGCCCGCT
* *
15563137 T-C-GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
196 TACTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAACCGA
* * *
15563200 GGGTTGCGAAAGCAAGATCAGTAGCACGTAGAAGGGGGACCC-GATCGATCCCCGGCTTGCGCAT
261 GGGTTGCGAAAGCAAGATCAGCAGCACGTA-AAGGCGGACCCGGCT-GATCCCCGGCTTGCGCAT
* * *
15563264 CCTGCCCCTCTGGCCGACTGAGCACCCAAACGCTCG-TTCGGTGGGTTGACTTAGGCATACGGAG
324 CCTGCCCCTCTGGCCGACTGAGCACCCAAACGCTCGTTTC-ATGGGTTAACTTAGGCATACAGAG
* * * * *
15563328 TTCATTCCCA-TTCAAGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
388 TTCATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCAGACCAAGGGTTGC
* *
15563392 GGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCATATTCTTCTTCATCGGGACACCATCACC
453 GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCATCGGGACACCATCACC
* *
15563457 AGAGCATCGCCAGAGAACCTGACCGACGACATT-GGGTTCCGACGATCGGGGGGGCCAGGGGGTA
518 AGAGCATCGCCAGAGAACCTGACCGACGACATTGGGGCTCCGACGATC-GGAGGGCCAGGGGGTA
** *
15563521 TGCACACATGATGTTTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAA
582 TGCACACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCTATCCCTCATCAA
15563586 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
647 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
15563651 TAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
712 TAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* * *
15563716 AGCTGAGTTGTTTTGTGCATGCCAACAAAAATACCAGGATCACGTCTACGAAGTTT
777 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
15563772 GGGGCCAAAA
Statistics
Matches: 739, Mismatches: 85, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
828 13 0.02
829 457 0.62
830 88 0.12
831 1 0.00
832 1 0.00
833 14 0.02
837 165 0.22
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (833 bp):
AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGTCGCCCGCCCGCCCGCT
TACTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAACCGA
GGGTTGCGAAAGCAAGATCAGCAGCACGTAAAGGCGGACCCGGCTGATCCCCGGCTTGCGCATCC
TGCCCCTCTGGCCGACTGAGCACCCAAACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTC
ATTCCCAGTCCAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCAGACCAAGGGTTGCGGC
AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCATCGGGACACCATCACCAGA
GCATCGCCAGAGAACCTGACCGACGACATTGGGGCTCCGACGATCGGAGGGCCAGGGGGTATGCA
CACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTC
Found at i:15565125 original size:26 final size:26
Alignment explanation
Indices: 15565089--15565139 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15565079 TGACTTAGGG
15565089 ATACGGAGTTCA-TTCACAGTCTAAGC
1 ATACGGAGTTCATTTC-CAGTCTAAGC
15565115 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATTTCCAGTCTAAG
15565140 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTTCCAGTCTAAGC
Found at i:15566887 original size:26 final size:26
Alignment explanation
Indices: 15566851--15566903 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15566841 GTTGACTTAG
15566851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15566877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15566903 G
1 G
15566904 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15567143 original size:898 final size:896
Alignment explanation
Indices: 15562944--15576481 Score: 16513
Period size: 872 Copynumber: 15.3 Consensus size: 896
15562934 ACCAAGTTTC
* * * * *
15562944 AAAAATAGAAAACGTGTCGTCTTGCCAAGAAACTTCATGTGAAGGCATAAGGGACCATTGTATGG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15563009 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
15563074 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG--C-C-C
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
*
15563135 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCG
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCG
* ** * * *
15563199 AGGGTTGCGAAAGCAAGATCAGTAGCACGTAGAAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
260 AGGGTTACGGCAGCAGGATCGGCAGCACGTAG-AGGGGGACCCGA-CGATCCCCGGCTTGCGCAT
* * **
15563264 CCTGCCCCTCTGGCCGACTGAGCACCCAAACGCTCG-TTCGGTGGGTTGACTTAGGCATACGGAG
323 CCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAG
* * *
15563328 TTCATTCCCATTC-AAGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
386 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGC
* * * ** * ** * **
15563392 GGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCATATTCTTCTTCATCGGGACACCATCACC
450 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
* * * *
15563457 AGAGCATCGCCAGAGAACCTGACCGAC-GACATT-GGGTTCCGACGATCGGGGGGGCCAGGGGGT
515 GGAGCATCGCCGGAGAACCTGACCGGCAG-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * ** *
15563520 ATGCACACATGATGTTTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCA
579 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
15563585 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
644 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
15563650 TTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
709 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
15563715 TAGCTGAGTTGTTTTGTGCATGCCAACAAAAATACCAGGATCACGTCTACGAAGTTTGGGGCCAA
774 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
15563780 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCATG
839 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTG
*
15563838 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT-AGAGGCTTAAGGGACCATTGTATG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATG
** * * *
15563902 AATTTACAAAACATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTAT
65 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * ** *
15563967 GACCCTATCGATCTACGACGAGCGCATCCCGTCTCTCTGG-TCGGCGTAGTGCCCTCCCGTCCGC
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTG----CCCGCCCGC
* * ** ***
15564031 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATGG
190 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
15564096 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAACCCGGTCGATCCCCGGCTTG
255 GACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGG-ACCC-GACGATCCCCGGCTTG
* * * * *
15564161 TGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTAT
318 CGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
15564226 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGG
382 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGG
* ** *
15564291 -T-----------TGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGCGGCACCAT
446 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * * *
15564344 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCC-AGCGATCGAGGGGGCCAGG
511 CGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
* * *
15564407 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCACTC
575 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15564472 ATCAAACCTTGAGAACTCACACACCCTTAGAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTA
640 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
15564537 GCCGTTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAG
705 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
15564602 TTTTTAGCTAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
770 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
15564667 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCA-AAAATCATG
835 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTG
* * * * *
15564729 AAAAGTAGAAAACGAGTCATCTTGCCAAGATACTTCACTTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** * *
15564794 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCTACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** *
15564859 ACCCTATCGATCCACAACTTGCACATCCCG------T--CT--C----T-CCCGCCCG--C-C-C
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * ** * **
15564905 GCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTTATTCCCAGTCTAAGATTGGATCAGATTGA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * ** * *
15564970 GGGTTGCAGTAGTAGGATCACCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCC
261 GGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCC
* * *
15565035 CGCCCCTTTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTC
325 CGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * ** * *
15565100 ATTCACAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTAGACCGGATTGAGGGTTACGGC
389 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGAC
* *
15565165 ATG-ACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTT-----------CA-C--CGG
453 A-GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGG
* * * *
15565215 AGCATCGTCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTT
517 AGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGG-T
* * * * *
15565280 ATGCGCATATGATGTGCAATGTGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCA
579 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
15565345 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
644 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
15565410 TTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
709 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * ** *
15565475 TAGCTGAATTTTTTTTTGCATGCCAACAAAAAGACAAGGATCACGTCTATGAGGTTTGGGGCCAA
774 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
15565540 AACTCCTTCC-AAAAAATTTTTAAAAAATCCCGAACCGTCAAAAGTTTTA-AAATTTGTG
839 AACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAG-TTTAGAAAATCGTG
*
15565598 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
15565663 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * ** * *
15565728 ACCCTATCGATCCACAGCTTGCGCATCCTGCCTATCTCACCGACGTAGTGCCCGCCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG--C
*
15565793 GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGA
194 -T-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
15565858 CAGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGCGC
257 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCTTGCGC
* *
15565923 ATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
321 ATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
15565988 GTTCATTCCCAGTC----C--A---AG---------A-TC----A--GACCGGACCAAGGGTTAC
385 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGC
** * * * * **
15566028 GGTAGCACATGATGGGCCCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGTC
450 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
* * ** * *
15566093 GGAGCATCACCGGAGAACCTGACCGACAGCATTGGCATTTCGACAATCGGGGGGGCCGGGGGGGT
515 GGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGT
* * * *
15566158 GTGCGCGCATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTAGCCCCCTATCCCTCATCA
579 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
15566223 AACCTCGAGAACTCACACCCCCTTAAAGAGTATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCA
644 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
15566288 TTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
709 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
15566353 TAGCTGAATGTTTTTGTGCATGGCAAAAAAAATAAAAGGATCACGTCTACGAAGTTTGGGGCCAA
774 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
15566418 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAGAAAATCGTG
839 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
*
15566476 AAAAA-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
15566540 ATTTACAAGCCATAAAAATATCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACA
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * ** * * *
15566605 ACCCTATCAATCAACGACTTGTACATCCCGTCTCTCTGGCTGGCATAGTGCCCACCCGCTCGCTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * * * *
15566670 GCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGGCCGGACCAA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
15566735 GGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACAAATCCCCGGCTTACGCATCC
261 GGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCC
* * * * * * *
15566800 CTCCCCTCTGGTCGTTGAGCGCCCACACACTCATTACGTGGGTTGACTTAGGCATACGGAGTTCA
325 CGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
15566865 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCGACA
390 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGACA
* * ** *
15566930 ACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCACCGAAG
454 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAG
* ** * ** *
15566995 CATCACCGGAGAACCTGACCGGTGGGCATTGGGGTTCTGACGATC-AAGGGGCCGGGGGCATGTG
519 CATCGCCGGAGAACCTGACCGG-CAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTG
* *
15567059 CGCACATGATGTGCGTTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
582 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
15567124 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
647 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15567189 AAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
712 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
15567254 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTATATCAAGTTTGGGGCCAAAA-
777 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
15567318 -----CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCGAAGATCGTG
842 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
*
15567368 AAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15567433 ATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTAG
66 ATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15567497 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--C-C-
*
15567562 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
191 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * ** * * * **
15567627 AATGAGAGTTACGGTAGCAAGATCGATAGCACATAGAGGGGGACCCGACAGATCCTC-GATATAT
256 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCT-TGC
* ** *
15567691 GCATCCCACCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACG
319 GCATCCCGCCCCTCTGG-CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
15567756 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
383 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGT
* * * * *
15567821 TAC-AGTAGCACATGCTGGGCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
447 TGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* *
15567885 CGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
511 CGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG
* * *
15567950 GCGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCT
575 G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
15568015 CATCAAACGTCGAGACCTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
639 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15568080 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGA
704 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
15568145 GTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGG
769 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* **
15568210 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTG
834 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
*
15568273 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15568338 ATTTACAAGCCAAAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** *
15568403 ACCCTATCGATCGACTACTTGCGCATCCCGTCTCTCTGGCCGG-GATAGTGCTCTTCCGCCCGTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCG-TAGTG--C--CCG--C--C
* * * ** * * **
15568467 CGCCCGCCCGCTCATGTCGTCGGTTTTCTTAGGTATACGGAGTTCATTCCCAGTCCAAGATTGGA
187 CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * *
15568532 CCAGACCGAGGGTTGTGACAGCATGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACT
252 CCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCGGCT
* * ** *
15568597 TGCGCATCCCGCCCCTCTGGCCTGTTGAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGCAT
316 TGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
15568662 ACAGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
380 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG
* * * * *
15568727 GGTTGC-AGCAGCACATGCTGGGTTCAGGCATGTGCTGGTGCCTCCTTTTTCTTCACCGGGGCAC
444 GGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * *
15568791 CA---T-----CAT---CGGAGAACCTAACCGACAGCATTGGGGTTCCGACGATTGGGAGGGCCG
508 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCG
*
15568845 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCC
573 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
15568910 TCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGTCAG
638 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
15568975 TAGCAATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
703 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
15569040 AGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCACGTTTTG
768 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
15569105 GGCCAAAACTCTTTCCTAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATG
833 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
15569169 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15569234 ATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTAG
66 ATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15569298 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--C-C-
*
15569363 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
191 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * * ** * * * **
15569428 AATGAGAGTTACGGTAGCAAGATCGATAGCACATAGAGGGGGACCCGACAGATCCTC-GATATAT
256 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCT-TGC
* ** *
15569492 GCATCCCACCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACG
319 GCATCCCGCCCCTCTGG-CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
15569557 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
383 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGT
* * * * *
15569622 TAC-AGTAGCACATGCTGGGCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
447 TGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* *
15569686 CGTCGGAGCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
511 CGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG
* * *
15569751 GCGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCT
575 G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
15569816 CATCAAACGTCGAGACCTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
639 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15569881 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGA
704 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
15569946 GTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGG
769 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* **
15570011 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTG
834 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
*
15570074 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * * *
15570139 ATTTACAAGGCATAAAAGTGTCATTGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTCCC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * *
15570204 ACCCTATCGATCCACGGCTTGTTCATCCAGTCTCTCTAG-TAGGCGTAGTGCCCGCCCGCCCACC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCG----CC
* * ** * * * *
15570268 CACCCGCTCGTTTTATTGGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAG
191 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * * * * * *
15570333 ACTGATGGTTACGATAGTAGTATCGGCAACACGTAGAAGGAGACCCGATCGATCCCCAGCTTGGG
256 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCGGCTTGCG
* * * * * * *
15570398 CATCCCGCCCCTCTTGTCGACTGAGCACCCGTACGCTCATGTCGTGGGTTGACTTAGGCATACAG
320 CATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
15570463 AGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C----A--GACC--A---AGGGTTG
384 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTG
* * ** * *
15570503 CGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCAGGACACCATCGT
449 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * * *
15570568 CGAAGCATCGCCGGAGAACCTGACAGACAGCATTGGGGTTTCGACGATCGGGTGGGCCGGGGGGT
514 CGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-
* *
15570633 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCATATCCCTCAT
577 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
15570698 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGC
642 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
15570763 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
707 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
15570828 TTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
772 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
15570893 AAAACTCCTTCCGAAGAAATTTTTAAAAATCTCAAATCGTAAAAAGTTT-GAAAAATCTTG
837 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAG-AAAATCGTG
* *
15570953 AAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15571018 ATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAAACGCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * *
15571082 A-CC---C--T--A-----T-CG-ATCCCGTCTCTCTGGCCGATGTAGTGCCC-ACCG---GCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * * *
15571128 GCTCGTTTCGTCAGTTGGCTTAGGCATGCGGAGTTCATTCCCATTCTAAGATCAGACCAGACCAA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * *
15571193 GGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCACATCC
261 GGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCC
* * * * *
15571258 CGCCCCTTTGGCCGACTGAGCGCCCGCGCGCTCG-TTCGTGGTTTGACTGAGGCAGACGGAGTTC
325 CGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
15571322 ATTCCCAGTCTAAG-AT-C-G-G---------A--CT--G---GACC--A---AGGGTTGTGGCA
389 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGACA
* * * * * *
15571362 GCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAACATAGTCAGAC
454 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAG
* * *
15571427 CATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCC-AGCGATCGGGCGGGCCGGGGGGTGTGC
519 CATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGC
* * *
15571491 GCACATGATGTGAGATTGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
583 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15571556 TCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
648 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15571621 AGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGC
713 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
15571686 TGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
778 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
15571751 CCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAAGTTT-GAAAATCATG
843 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTAGAAAATCGTG
* *
15571805 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15571870 ATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * *** * *
15571935 ACCCAATCTATCCACTACATAATCATCCCGTCTCTCTGG-TCGGTGTAGTGCCCGCCTGCCCGCT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCT
* *
15571999 TGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACC
195 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACC
* * * * * **
15572063 AAGGGTTATGGCAGCAGGATCGACAGCACGGAGAGGGGGACCCGGCCGATCCCCGGCTTGATCAT
259 GAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACGATCCCCGGCTTGCGCAT
** * * *
15572128 CCCGCCCCTCTGGCCGACTGAGTACCCGCACGCTCATTTCGTGGCTTGACTTAGGCATATGGAGT
323 CCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
15572193 TCATTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCG
387 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCG
* * *
15572258 GCAGCACATACTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
451 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * * *** *
15572323 GAGCATCGTCAGAGAACTTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGCTG
516 GAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TG
* *
15572388 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGGCCCCTATCCCTCATCAA
580 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
15572453 ACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGAATTTACAAGTTTGCTGCCAGTAGCCAT
645 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15572518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTT
710 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
15572583 AGCTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAA
775 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
15572648 ACTCATTTCGAAAAAATTTTCACAAATCCCGAACCGTAAAAAGTTTCA-AAAATCGTG
840 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTG
* * *
15572705 AAAAATAAAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
15572770 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGTGTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15572835 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG-C-
* *
15572900 GTCCACTCGTTTCGTTC-GATGGCTTAGGCATCTACGCGAGTTCATTCCCAGTCTAA-ATCAGAC
194 -T-CGCTCGTTTCG-TCGGTTGGCTTAGGCA--TACG-GAGTTCATTCCCAGTCTAAGATCAGA-
* ** * * * * *
15572963 CCAAAATTGAGAGTTACAGCAGTAGGAATCGGCAGCACGTAGAGGGGGACACGATCGATCCCTGG
252 CC-AGACCGAGGGTTACGGCAGCAGG-ATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCGG
* * * * *
15573028 CTTGCGTATACCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGC
314 CTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* ***
15573093 ACACGGAGTTCATTTGTAGTCTAAG-AT-C--AG---A----C---C-AAGAT-GA--GG---G-
378 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGA
* * * * *
15573136 CGG-TGCGACAGCA-AT-CATGAGCTC-GGCAT-TGCT-GTTCCGTATTTTTCTTCCCCGGGGCA
443 GGGTTGCGACAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * * * * * *
15573195 CCGTCTTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGAGGGGTC
507 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGG-GGGGGC
* *
15573260 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATC
571 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
15573325 TCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
636 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
15573390 AGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGTCAAAAAATCTTGTACACTT
701 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
15573455 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCACATCTACCAAGTTT
766 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * **
15573520 GGTGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACCAAAAAAAGTTTCA-AAAATCG
831 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCG
15573584 TG
895 TG
* *
15573586 AAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * ** *
15573651 ATTTACAAACCATAAAAATGGCATTGGCATGCAAAAATAAGAAGATGTGAATAAACCCACCTATC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
15573716 ACCCTATCGATCCATGGTTTGCGCATCCTGTCTTTCTGG-TCGGTGTAGTGACTGCCCGCCCGTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTA--G--TGCCCGCCCGCC
* * * *
15573780 CGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
191 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* ** * **
15573845 ATCGAGGGTTACGAAAGTAGGATCGGCAGCACGTAGAGGGGGATGCGACCGATCCCCGGCTTGCG
256 ACCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCGGCTTGCG
* * ** *
15573910 CATCCCACCCCTCTGGCCGGCTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGG
320 CATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
15573975 AGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--A-A---A-C---CCG-GGGTTA
384 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTG
* * *
15574015 CTG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTG
449 C-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
** * * * * * * * *
15574079 TCGGAGCATCGCTTAGAGAACATGATCGACGAG-ATTGGGGTTTCGGCAATCGGGGGGCCCGGGT
513 TCGGAGCATCGC-CGGAGAACCTGACCGGC-AGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
15574143 GGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
576 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15574207 TCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
641 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * *
15574272 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTGAATTGGTCACAAAATATTGTACACTTCAAGT
706 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
15574337 TTTTAGCTGAATTTTTTTGCGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
771 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
15574402 CAAAACACCTTTCGAAAAAATTTTAAAAAATCTCGAA-CATAAAAAGTTTCA-AAAATCGTG
836 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTG
* * * *
15574462 AAACATAGAAAATGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15574527 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15574592 ACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGC-C
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * * * ** *
15574656 TGCTCATTTCGTTGGCTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACGGGACTG
196 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * *
15574721 AGGGTTGCGGCAACAAGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCTCGACTTGTGCATC
260 AGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATC
* * *
15574786 CCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
324 CCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
15574851 CATTCCCAG--T---C-TA---AG---------A-TC--AGAT----CGGACCGAGGGTTGCGGC
388 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGAC
* * * *
15574891 AGCACATGATGGGCTCGGGCATGTGCTTGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGA
453 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGA
* * *
15574956 GTATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGCGATTGGGGGGGCCGGGGGGTGTG
518 GCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTG
* * *
15575020 CGCAAATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
582 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
15575085 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGTCAGTAGCCATTA
647 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
15575150 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
712 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
15575215 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
777 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** ** *
15575280 TCTTTCTGAAAAAATTTTAAAAAATCCTAAACCACAAAAAGTTTTGAAAATCGTG
842 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
* * * *
15575335 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGACTTAATGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15575400 ATTTACAAGCCATTAAAATGGCATTGGGATGCAGAAATATGAAGATGTGCATAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
15575465 ACCCTATCGATCCAAGGCTTGCGCATCCCG------T--CT--C----T-------CG--C-CT-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * * ** * *
15575505 GCTCGTTTCGTCCGTTGGCTTAGGCATATGGAATTCATTATCAGTCTAAGATCATACC-GAACTG
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCG
* ** * *
15575569 AGGGTTGCATCAGTAGGATCGGCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTGC-CATC
260 AGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCGGCTTGCGCATC
** * **
15575632 CCGCCCCTCTGGCCGGCTGAGCATCCGCACGCACGTTTCGTGCTTTGACTTAGGCATACGGAGTT
324 CCGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
15575697 CATTTCGAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGA
388 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGA
* ** * **
15575762 CAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCG-CTG
452 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-G
* * *
15575826 GAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTG
516 GAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTG
* *
15575891 TGCGCACATGATGTGCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCATCAA
580 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
15575956 AGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
645 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
15576021 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
710 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
15576086 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
775 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
15576151 ACTCCTTCCCAAAAAATTTTACAAAATCTCGAACCGCAAAAAGTTTCA-AAAATCATG
840 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCGTG
*
15576208 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15576273 ATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * *
15576338 ACCCTATCGATCCATGGCTTGTACATCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
* * * *
15576403 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATTAGATCAGACCGA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
*
15576468 GGGTTGCGGCAGCA
261 GGGTTACGGCAGCA
15576482 CATGCTAGGC
Statistics
Matches: 11037, Mismatches: 1259, Indels: 692
0.85 0.10 0.05
Matches are distributed among these distances:
846 68 0.01
847 22 0.00
848 82 0.01
849 1 0.00
850 1 0.00
851 1 0.00
852 382 0.03
853 50 0.00
854 159 0.01
855 135 0.01
857 1 0.00
859 2 0.00
861 1 0.00
862 3 0.00
863 24 0.00
864 1 0.00
865 38 0.00
866 77 0.01
867 144 0.01
868 135 0.01
869 427 0.04
870 7 0.00
871 49 0.00
872 858 0.08
873 801 0.07
874 14 0.00
875 13 0.00
876 304 0.03
877 464 0.04
878 388 0.04
879 590 0.05
880 56 0.01
881 562 0.05
882 15 0.00
883 11 0.00
884 21 0.00
885 22 0.00
886 5 0.00
887 3 0.00
888 6 0.00
889 1 0.00
890 6 0.00
891 545 0.05
892 507 0.05
893 166 0.02
894 173 0.02
895 4 0.00
896 461 0.04
897 156 0.01
898 639 0.06
899 389 0.04
900 458 0.04
901 12 0.00
902 169 0.02
903 93 0.01
904 31 0.00
905 845 0.08
906 15 0.00
907 25 0.00
908 17 0.00
909 374 0.03
910 3 0.00
911 2 0.00
913 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGACAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
TCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAGAAAATCGTG
Found at i:15567786 original size:26 final size:26
Alignment explanation
Indices: 15567749--15567801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15567739 TTTGACTTAG
*
15567749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15567775 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15567801 G
1 G
15567802 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15568688 original size:26 final size:26
Alignment explanation
Indices: 15568658--15568707 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15568648 GTTGACTTAG
15568658 GCATACAGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
*
15568684 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
15568708 AAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Found at i:15569587 original size:26 final size:26
Alignment explanation
Indices: 15569550--15569602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15569540 TTTGACTTAG
*
15569550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15569576 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15569602 G
1 G
15569603 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15570033 original size:905 final size:899
Alignment explanation
Indices: 15562944--15576481 Score: 16498
Period size: 905 Copynumber: 15.3 Consensus size: 899
15562934 ACCAAGTTTC
* * * * *
15562944 AAAAATAGAAAACGTGTCGTCTTGCCAAGAAACTTCATGTGAAGGCATAAGGGACCATTGTATGG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15563009 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
15563074 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT----GCCCGCCCG-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
*
15563133 C-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAA
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
* * ** * * * *
15563196 CCGAGGGTTGCGAAAGCAAGATCAGTAGCACGTAGAAGGGGGACCCGATCGATCCCCGGCTTGCG
261 -TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAG-AGGGGGACCCGA-CGATCCCC-GCTTGTG
* * * **
15563261 CATCCTGCCCCTCTGGCCGACTGAGCACCCAAACGCTCG-TTCGGTGGGTTGACTTAGGCATACG
322 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACG
* * *
15563325 GAGTTCATTCCCATTC-AAGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGT
386 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * ** * ** *
15563389 TGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCATATTCTTCTTCATCGGGACACCATC
450 TAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
** * * *
15563454 ACCAGAGCATCGCCAGAGAACCTGACCGAC-GACATT-GGGTTCCGACGATCGGGGGGGCC-AGG
514 GTCGGAGCATCGCCGGAGAACCTGACCGACAG-CATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * ** *
15563516 GGGTATGCACACATGATGTTTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTC
578 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
15563581 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15563646 GCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
15563711 TTTTTAGCTGAGTTGTTTTGTGCATGCCAACAAAAATACCAGGATCACGTCTACGAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
15563776 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
838 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15563838 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT-AGAGGCTTAAGGGACCATTGTATG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATG
** * * *
15563902 AATTTACAAAACATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTAT
65 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * ** * *
15563967 GACCCTATCGATCTACGACGAGCGCATCCCGTCTCTCTGG-TCGGCGTAGTGCCCTCCCGTCCGC
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCG-
* * ** ***
15564031 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATGG
193 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
** * * * *
15564096 GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAACCCGGTCGATCCCCGGCTTG
258 GAATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGG-ACCC-GACGATCCCC-GCTTG
* * * *
15564161 TGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTAT
320 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
15564226 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGG
385 GGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* ** *
15564291 -T----------TGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGCGGCACCATC
449 TTACGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * *
15564345 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCC-AGCGATCGAGGGGGCC-AGG
514 GTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG
* * *
15564407 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCACTC
578 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15564472 ATCAAACCTTGAGAACTCACACACCCTTAGAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
15564537 GCCGTTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
15564602 TTTTTAGCTAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
15564667 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATG
838 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
* * * * *
15564729 AAAAGTAGAAAACGAGTCATCTTGCCAAGATACTTCACTTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** * *
15564794 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCTACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** *
15564859 ACCCTATCGATCCACAACTTGCACATCCCG------T--CT--C----T-----CCCGCCCG-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * ** * *
15564903 C-CGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTTATTCCCAGTCTAAGATTGGATCAGAT
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
* * * * ** * * *
15564967 TGAGGGTTGCAGTAGTAGGATCACCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCA
261 TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACGATCCCC-GCTTGTGCA
* * * *
15565032 TCCCGCCCCTTTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAG
324 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * ** **
15565097 TTCATTCACAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTAGACCGGATTGAGGGTTAC
389 TTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* *
15565162 GGCATG-ACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTT-----------CA-C--
453 -GCA-GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * *
15565212 CGGAGCATCGTCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGTGGGG
516 CGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGG
* * * * *
15565277 GTTATGCGCATATGATGTGCAATGTGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCA
580 G-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
15565342 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
644 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
15565407 CCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
709 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * ** *
15565472 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAGACAAGGATCACGTCTATGAGGTTTGGGGC
774 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
15565537 CAAAACTCCTTCC-AAAAAATTTTTAAAAAATCCCGAACCGTCAAAAGTTT-TAAAATTTGTG
839 CAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA-TCGTG
*
15565598 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
15565663 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * ** * *
15565728 ACCCTATCGATCCACAGCTTGCGCATCCTGCCTATCTCACCGACGTAGTGCCCGCCCGCCCGCC-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
*
15565792 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAG
196 C-T-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
15565857 ACA-GAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGC
259 A-ATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCC-GCTTGT
** *
15565921 GCATCCCGCCCCTCTGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
321 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
15565986 GAGTTCATTCCCAGTC----C--A--AG---------A-TC----A---GACCGGACCAAGGGTT
386 GAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * * **
15566026 ACGGTAGCACATGATGGGCCCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCG
451 AC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* ** * *
15566091 TCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGCATTTCGACAATCGGGGGGGCCGGGGGG
515 TCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * * *
15566156 GTGTGCGCGCATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTAGCCCCCTATCCCTCAT
580 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
15566221 CAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTCAGATTTTACAAGTTTGCTGCCAGTAGC
645 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
15566286 CATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
710 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
15566351 TTTAGCTGAATGTTTTTGTGCATGGCAAAAAAAATAAAAGGATCACGTCTACGAAGTTTGGGGCC
775 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
15566416 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAGAAAATCGTG
840 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15566476 AAAAA-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
15566540 ATTTACAAGCCATAAAAATATCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACA
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * ** * * *
15566605 ACCCTATCAATCAACGACTTGTACATCCCGTCTCTCTGGCTGGCATAGTGCCCACCCG--C-TCG
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * * * *
15566667 CTCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAGGCCGGAC
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
** * * * * * **
15566732 CAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACAAATCCCCGGCTTACGCA
261 TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCC-GCTTGTGCA
* * * * * * *
15566797 TCCCTCCCCTCTGGTC-GTTGAGCGCCCACACACTCATTACGTGGGTTGACTTAGGCATACGGAG
324 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* **
15566861 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGC
389 TTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* * **
15566926 GACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGTCACCATCACC
453 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
* * *** * ** **
15566991 GAAGCATCACCGGAGAACCTGACCGGTGGGCATTGGGGTTCTGACGATC-AAGGGGCCGGGGGCA
517 GGAGCATCGCCGGAGAACCTGACC-GACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
* *
15567055 TGTGCGCACATGATGTGCGTTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
581 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15567120 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
646 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15567185 ATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
711 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
15567250 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTATATCAAGTTTGGGGCCA
776 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
15567315 AAA------CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCGAAGATCGTG
841 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15567368 AAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15567433 ATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTAG
66 ATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15567497 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC-
*
15567562 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
194 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * ** * * * *
15567627 AATGAGAGTTACGGTAGCAAGATCGATAGCACATAGAGGGGGACCCGACAGATCCTCGATATATG
259 AATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGCT-TGTG
* ** *
15567692 CATCCCACCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGG
322 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
15567757 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
387 AGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
15567822 ACAGTAGCACATGCTGGGCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
451 AC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
*
15567887 TCGGAGCATCGTCGGAGAACCTGACC-AGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
515 TCGGAGCATCGCCGGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
15567951 CGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTC
579 -GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15568016 ATCAAACGTCGAGACCTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15568081 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
15568146 TTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
15568211 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTG
838 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15568273 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15568338 ATTTACAAGCCAAAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * *
15568403 ACCCTATCGATCGACTACTTGCGCATCCCGTCTCTCTGGCCGG-GATAGTGCTCTTCCGCCCGTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCG-TAGTG--C--CCGCCCGCC
* * * ** * * **
15568467 CGCCCGCCCGCTCATGTCGTCGGTTTTCTTAGGTATACGGAGTTCATTCCCAGTCCAAGATTGGA
191 CG-CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** ** * * * *
15568532 CCAGACCGAGGGTTGTGACAGCATGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACT
255 CCAGAATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCCG-CT
* * * * ** *
15568597 TGCGCATCCCGCCCCTCTGGCCTGTTGAGCACCCGCACGCTTATTTCATGGGTTGACTTAGGCAT
318 TGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
15568662 ACAGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
383 ACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * *
15568727 GGTTGCAGCAGCACATGCTGGGTTCAGGCATGTGCTGGTGCCTCCTTTTTCTTCACCGGGGCACC
447 GGTTAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * *
15568792 A---T-----CAT---CGGAGAACCTAACCGACAGCATTGGGGTTCCGACGATTGGGAGGGCC-G
511 ATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
15568845 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCC
576 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
15568910 TCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGTCAG
641 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
15568975 TAGCAATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
706 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
15569040 AGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCACGTTTTG
771 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
15569105 GGCCAAAACTCTTTCCTAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATG
836 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
15569169 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15569234 ATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCACCTAG
66 ATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15569298 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGC-
*
15569363 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
194 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * ** * * * *
15569428 AATGAGAGTTACGGTAGCAAGATCGATAGCACATAGAGGGGGACCCGACAGATCCTCGATATATG
259 AATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCGCT-TGTG
* ** *
15569493 CATCCCACCCCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGG
322 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
15569558 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
387 AGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
15569623 ACAGTAGCACATGCTGGGCTCGAGCATGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
451 AC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
*
15569688 TCGGAGCATCGTCGGAGAACCTGACC-AGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
515 TCGGAGCATCGCCGGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
15569752 CGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTC
579 -GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15569817 ATCAAACGTCGAGACCTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15569882 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15569947 TTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
15570012 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTG
838 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15570074 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * * *
15570139 ATTTACAAGGCATAAAAGTGTCATTGGCACGTAGAAATATGAAGATGTGCCGAAACCCACCTCCC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * * *
15570204 ACCCTATCGATCCACGGCTTGTTCATCCAGTCTCTCTAG-TAGGCGTAGTGCCCGCCCGCCCACC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCC-GC
* * ** * * * *
15570268 CACCCGCTCGTTTTATTGGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAG
194 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * ** * * * * * *
15570333 ACTGATGGTTACGATAGTAGTATCGGCAACACGTAGAAGGAGACCCGATCGATCCCCAGCTTGGG
259 AATGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCC-GCTTGTG
* * * * * * * *
15570398 CATCCCGCCCCTCTTGTCGACTGAGCACCCGTACGCTCATGTCGTGGGTTGACTTAGGCATACAG
322 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
15570463 AGTTCATTCCCAGTCTAAG-AT-CG-G---A----C---C----A---GACC--A---AGGGTTG
387 AGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
* * ** * *
15570503 CGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCAGGACACCATCGT
452 CG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * *
15570568 CGAAGCATCGCCGGAGAACCTGACAGACAGCATTGGGGTTTCGACGATCGGGTGGGCCGGGGGGT
516 CGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-
* *
15570633 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCATATCCCTCAT
580 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
15570698 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGC
645 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
15570763 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
710 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
15570828 TTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
775 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
15570893 AAAACTCCTTCCGAAGAAATTTTTAAAAATCTCAAATCGTAAAAAGTTT-GAAAAATCTTG
840 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCG-AAAATCGTG
* *
15570953 AAAAATAGAAAACGGGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15571018 ATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAAACGCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** *
15571082 A-CC---C--T--A-----T-CG-ATCCCGTCTCTCTGGCCGATGTAGTGCCC-ACCG---G-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * * *
15571126 C-CGCTCGTTTCGTCAGTTGGCTTAGGCATGCGGAGTTCATTCCCATTCTAAGATCAGACCAGAC
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
** * * * **
15571190 CAAGGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCACA
261 TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCC-GCTTGTGCA
* * * * * *
15571255 TCCCGCCCCTTTGGCCGACTGAGCGCCCGCGCGCTCG-TTCGTGGTTTGACTGAGGCAGACGGAG
324 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
**
15571319 TTCATTCCCAGTCTAAG-AT-CG-G---------A--C-----T-GGACC--A---AGGGTTGTG
389 TTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-AC
* * * * *
15571359 GCAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAACATAGTCA
453 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * * * *
15571424 GACCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCC-AGCGATCGGGCGGGCC-GGGGGGT
518 GAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGT
* * *
15571487 GTGCGCACATGATGTGAGATTGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCA
582 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
15571552 AACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
647 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
15571617 TTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTT
712 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
15571682 TAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
777 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
15571747 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAAGTTT-GAAAATCATG
842 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCGAAAATCGTG
* *
15571805 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15571870 ATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * *** * *
15571935 ACCCAATCTATCCACTACATAATCATCCCGTCTCTCTGG-TCGGTGTAGTGCCCGCCTG--C-CC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCC
* *
15571996 GCTTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA
195 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * * * *
15572060 ACCAAGGGTTATGGCAGCAGGATCGACAGCACGGAGAGGGGGACCCGGCCGATCCCCGGCTTGAT
260 A-TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACGATCCCC-GCTTG-T
* ** * * *
15572125 -CATCCCGCCCCTCTGGCCGACTGAGTACCCGCACGCTCATTTCGTGGCTTGACTTAGGCATATG
321 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
15572189 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCAGACCCGACCGAGGGT
386 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
15572254 TGCGGCAGCACATACTGGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
450 TAC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * ** *
15572319 GTCGGAGCATCGTCAGAGAACTTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGG
514 GTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
15572384 GCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGGCCCCTATCCCTCA
579 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
15572449 TCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGAATTTACAAGTTTGCTGCCAGTAG
644 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
15572514 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTGAGT
709 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
15572579 TTTTAGCTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGTGC
774 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
15572644 CAAAACTCATTTCGAAAAAATTTTCACAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
839 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
* * *
15572705 AAAAATAAAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
15572770 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGTGTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15572835 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCC-
* *
15572900 G-TCCACTCGTTTCGTTC-GATGGCTTAGGCATCTACGCGAGTTCATTCCCAGTCTAA-ATCAGA
195 GCT-CGCTCGTTTCG-TCGGTTGGCTTAGGCA--TACG-GAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
15572962 CCCAAAATTGAGAGTTACAGCAGTAGGAATCGGCAGCACGTAGAGGGGGACACGATCGATCCCTG
255 -CCAGAA-TGAGGGTTACGGCAGCAGG-ATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCC-C
* * * * * * *
15573027 GCTTGCGTATACCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAGG
315 GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* ***
15573092 CACACGGAGTTCATTTGTAGTCTAAG-AT-C-AG---A----C---C-AAGAT--GA--GG---G
380 CATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * *
15573136 -CGG-TGCGACAGCA-AT-CATGAGCTC-GGCAT-TGCT-GTTCCGTATTTTTCTTCCCCGGGGC
445 AGGGTTACG-CAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * * * * *
15573194 ACCGTCTTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATCGGAGGGGT
508 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGC
*
15573259 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTAT
573 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
15573324 CTCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
638 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
15573389 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAAGGTCAAAAAATCTTGTACACT
703 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
15573454 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCACATCTACCAAGTT
768 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * ** *
15573519 TGGTGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCG
833 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCG
15573584 TG
898 TG
* *
15573586 AAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * ** *
15573651 ATTTACAAACCATAAAAATGGCATTGGCATGCAAAAATAAGAAGATGTGAATAAACCCACCTATC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
15573716 ACCCTATCGATCCATGGTTTGCGCATCCTGTCTTTCTGG-TCGGTGTAGTGACTGCCCGCCCGTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCG-C
* * * *
15573780 CGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
194 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * ** *
15573845 -ATCGAGGGTTACGAAAGTAGGATCGGCAGCACGTAGAGGGGGATGCGACCGATCCCCGGCTTGC
259 AAT-GAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCC-GCTTGT
* * ** *
15573909 GCATCCCACCCCTCTGGCCGGCTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATACG
321 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
15573974 GAGTTCATTCCCAGTCTAAG-AT-C-AG---A----C---C--A-A----A-C---CCG-GGGTT
386 GAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * *
15574014 ACTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTG
451 AC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
** * * * * * *
15574079 TCGGAGCATCGCTTAGAGAACATGATCGACGAG-ATTGGGGTTTCGGCAATC-GGGGGGCCCGGG
515 TCGGAGCATCGC-CGGAGAACCTGACCGAC-AGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
*
15574142 TGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
578 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
15574206 ATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * *
15574271 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTGAATTGGTCACAAAATATTGTACACTTCAAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
15574336 TTTTTAGCTGAATTTTTTTGCGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
15574401 CCAAAACACCTTTCGAAAAAATTTTAAAAAATCTCGAA-CATAAAAAGTTTCAAAAATCGTG
838 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
* * * *
15574462 AAACATAGAAAATGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15574527 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15574592 ACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * * * ** *
15574655 CT-GCTCATTTCGTTGGCTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACGGGAC
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
* * * *
15574719 TGAGGGTTGCGGCAACAAGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCTCGACTTGTGCA
261 TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAC-GATCCCCG-CTTGTGCA
* * *
15574784 TCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
324 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
15574849 TTCATTCCCAG--T---C-TA--AG---------A-TC--AGAT-----CGGACCGAGGGTTGCG
389 TTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC-
* * * *
15574889 GCAGCACATGATGGGCTCGGGCATGTGCTTGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCG
453 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * * *
15574954 GAGTATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGCGATTGGGGGGGCC-GGGGGGT
518 GAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGT
* * *
15575017 GTGCGCAAATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
582 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
15575082 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGTCAGTAGCCA
647 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
15575147 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
712 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
15575212 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
777 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** ** *
15575277 AACTCTTTCTGAAAAAATTTTAAAAAATCCTAAACCACAAAAAGTTTTGAAAATCGTG
842 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
* * * *
15575335 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGACTTAATGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15575400 ATTTACAAGCCATTAAAATGGCATTGGGATGCAGAAATATGAAGATGTGCATAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
15575465 ACCCTATCGATCCAAGGCTTGCGCATCCCG------T--CT--C----T-----------CG-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * * ** *
15575503 CT-GCTCGTTTCGTCCGTTGGCTTAGGCATATGGAATTCATTATCAGTCTAAGATCATACC-GAA
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
* ** * * *
15575566 CTGAGGGTTGCATCAGTAGGATCGGCAGCACGCAGA-GGGGACCCGACCGATCCCCGGCTTG-CC
261 -TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CGATCCCC-GCTTGTGC
** * **
15575629 ATCCCGCCCCTCTGGCCGGCTGAGCATCCGCACGCACGTTTCGTGCTTTGACTTAGGCATACGGA
323 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
15575694 GTTCATTTCGAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGAACCAGACCGAGGGTTA
388 GTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
* ** * **
15575759 CGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCG-
452 CG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * *
15575823 CTGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGG
516 C-GGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
15575888 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCAT
580 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
15575953 CAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
645 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
15576018 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
710 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
15576083 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
775 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
15576148 AAAACTCCTTCCCAAAAAATTTTACAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
840 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
*
15576208 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15576273 ATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * *
15576338 ACCCTATCGATCCATGGCTTGTACATCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCG-C-
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
* * * * *
15576401 C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATTAGATCAGAC
196 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
* *
15576465 CGAGGGTTGCGGCAGCA
261 TGAGGGTTACGGCAGCA
15576482 CATGCTAGGC
Statistics
Matches: 11034, Mismatches: 1259, Indels: 698
0.85 0.10 0.05
Matches are distributed among these distances:
846 68 0.01
847 22 0.00
848 86 0.01
851 1 0.00
852 380 0.03
853 50 0.00
854 157 0.01
855 134 0.01
856 1 0.00
857 2 0.00
859 2 0.00
861 1 0.00
862 3 0.00
863 24 0.00
864 1 0.00
865 38 0.00
866 76 0.01
867 145 0.01
868 139 0.01
869 426 0.04
870 5 0.00
871 43 0.00
872 846 0.08
873 801 0.07
874 15 0.00
875 14 0.00
876 318 0.03
877 454 0.04
878 391 0.04
879 592 0.05
880 56 0.01
881 587 0.05
882 7 0.00
883 10 0.00
884 13 0.00
885 9 0.00
886 4 0.00
887 3 0.00
888 10 0.00
889 2 0.00
890 3 0.00
891 546 0.05
892 514 0.05
893 167 0.02
894 170 0.02
895 4 0.00
896 460 0.04
897 152 0.01
898 646 0.06
899 381 0.03
900 458 0.04
901 11 0.00
902 171 0.02
903 95 0.01
904 30 0.00
905 850 0.08
906 15 0.00
907 23 0.00
908 18 0.00
909 380 0.03
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCG
CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA
TGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACGATCCCCGCTTGTGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAG
CATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTG
Found at i:15575733 original size:26 final size:26
Alignment explanation
Indices: 15575685--15575737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15575675 TTTGACTTAG
* * *
15575685 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
15575711 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
15575737 G
1 G
15575738 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:15577099 original size:714 final size:716
Alignment explanation
Indices: 15575711--15577168 Score: 2373
Period size: 714 Copynumber: 2.0 Consensus size: 716
15575701 TCGAGTCTAA
* * * *
15575711 GCATACGGAGTTCAGTCCCAGTCTAAGA-TCGAACCAGACCGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATTAGAACCAGACCGAGGGTTACGACAGCACATGCTAG
* *
15575775 GCTTGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCGCTGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCGCTGGAGCATCACCGGAG
*
15575840 AACTTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 AACTTGACCAGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
15575905 GCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCA
196 GCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCA
15575970 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15576035 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
* * * * *
15576100 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACATCTAACAAATTTGGGGCCAAAACGCCGTCCCAAAA
* * *
15576165 AATTTTACAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCT
456 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCT
*
15576230 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15576295 TTTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
586 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
* * *
15576360 ACATCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
651 ACACCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTCGCTTA
15576425 G
716 G
* * * * *
15576426 GCATACGGAGTTCATTCCTAGTTTAAGATTAG-ATCAGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCAAGTCTAAGATTAGAACCAGACCGAGGGTTACGACAGCACATGCTAG
* ** **
15576490 GCTCGGGGATGTGCTGGTGCTGAATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCGCTGGAGCATCACCGGAG
* * * **
15576555 AACTTGACTAGCGGCTTTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
131 AACTTGACCAGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15576619 GCGTTGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCGTCATCAAAGCTTGAGAACTCA
196 GCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCA
*
15576684 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15576749 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
* * *
15576814 GTGCATGCCAACAAAAATACAAGGATCACATCTAAGAAATTTGGGGCCGAAACGCCGTCCGAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACATCTAACAAATTTGGGGCCAAAACGCCGTCCCAAAA
** * **
15576879 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGGGTCGTCT
456 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCT
*
15576944 TGCCATGAAACTTCACGTGAAGGCCTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
15577009 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
586 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
* * * * * *
15577074 GCACCCCGTCTTTTTGGCCGGCGTAGTGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTCGCTTA
651 ACACCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTCGCTTA
15577139 G
716 G
15577140 GCATACGGAGTTCATTCCAAGTCTAAGAT
1 GCATACGGAGTTCATTCCAAGTCTAAGAT
15577169 CAGACCGGAC
Statistics
Matches: 683, Mismatches: 59, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
714 534 0.78
715 147 0.22
716 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATTAGAACCAGACCGAGGGTTACGACAGCACATGCTAG
GCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCAAGGCACCATCGCTGGAGCATCACCGGAG
AACTTGACCAGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACGTGACCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
GTGCATGCCAACAAAAATACAAGGATCACATCTAACAAATTTGGGGCCAAAACGCCGTCCCAAAA
AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCT
TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
ACACCCCATCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTCGCTTA
G
Found at i:15577348 original size:26 final size:26
Alignment explanation
Indices: 15577298--15577350 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15577288 GTTGACTTAG
* * * *
15577298 GCATACGGAGTTCGTTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15577324 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15577350 G
1 G
15577351 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:15578225 original size:26 final size:26
Alignment explanation
Indices: 15578196--15578248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15578186 GTTGGCTTAG
*
15578196 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15578222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15578248 G
1 G
15578249 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15579133 original size:26 final size:26
Alignment explanation
Indices: 15579097--15579149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15579087 GTTGACTTAG
* * *
15579097 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATTCCCAATCTAA
15579123 GCATAGGGAGTTCATTCCCAATCTAA
1 GCATAGGGAGTTCATTCCCAATCTAA
15579149 G
1 G
15579150 ATTGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAATCTAA
Found at i:15579244 original size:901 final size:899
Alignment explanation
Indices: 15576426--15581797 Score: 6804
Period size: 877 Copynumber: 6.0 Consensus size: 899
15576416 GTTGGCTTAG
* * ** * *
15576426 GCATACGGAGTTCATTCCTAGTTTAAGATTAGATCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15576491 CTCGGGGATGTGCTGGTGCTGAATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAG
* ** * * *
15576555 AACTTGACTAGCGGCTTTGGGGTT-TCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGACATTGGGGTTCT-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
15576619 GCGTTGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCGTCATCAAAGCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15576684 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15576749 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
15576814 GTGCATGCCAACAAAAATACAAGGATCACATCTAAGAAATTTGGGGCCGAAACGCCGTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAA---CATCCGAAAA
* ** * * *
15576879 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGGGTCGTCT
450 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15576944 TGCCATGAAACTTCACGTGAAGGCCTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15577009 ATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
15577074 GCACCCCGTCTTTTTGGCCGGCGTA--G-TG--CCCGCCTGCCCGCCCACTCGTTTCGTCGGTTC
645 GCATCCCGTCTCTCTGGCCGG-GTAGTGCTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
15577134 GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGA-GGTTACGGCAACAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGA
* * * * * *
15577198 TCGACAGCACGCAAAGGGGGACCTGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACT
774 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
15577263 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTTCTAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15577324 GCATACGGAGTTCATTCCCACTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15577389 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
15577454 ACCTGACCGACAACATT-GGGTTCTGACGACCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * ** * *
15577518 AATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATTGAACCTCTAGAAGTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15577583 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCTATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15577648 GGGACA-TTGTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTG
325 GGGACACTT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
15577712 TACATGCCAACAAAAATACAAGGATCACATCTAAGAAGTTTGGGGCCGAAACTCCATCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAA---CATCCGAAAAA
* *
15577777 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * * *
15577842 GCCATGAAACTTCATGTGAACGCTTGAGGGACCACTGTATGAATTTGCAAGCCATAAAAATGGCA
516 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15577907 TTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGC
581 TTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15577971 GCATCCCGTCTCTCTGGCC---TACCTAG-TG--CCCGCCCGCACGCCCGCTCATTTCGTCGGTT
645 GCATCCCGTCTCTCTGGCCGGGTA-GT-GCTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** * * * *
15578030 GGCTTAGGCAAACGAAGTTCAATCCCAGTCTAAGATTGGACCAAACAGAGGGTTGCGGTAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGG
** * * **
15578095 ATCGGCAGCACATAGAGAGGGA-CCTAGTCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGG
773 ATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * ** * *
15578159 TTGAGCGCCTGCACGCTCGTTTCAAGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15578222 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
15578287 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * **
15578352 ACCTGACCGGTGGCATTGGGGTTCTGACGATCAAGGGGCCGGGGGCGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACATTGGGGTTCTGACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGTGC
* * *
15578417 GTTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15578482 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15578547 GGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15578612 GCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCC-AAA-A-CCAAAAAAATTT
390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACATCCGAAAAAATTT
* * * *
15578674 TAAAAAATCCCGAACCGTAAAAGGTTTCGAAGATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
15578739 TCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGG
520 TCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * **
15578804 CATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACTACTTGCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
15578869 CCGTCTCTCTGGCCGGGATAGTGCTCGCCCATCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTAGC
650 CCGTCTCTCTGGCCGGG-TAGTGCT-GCCC--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * ** *
15578934 TTAGGCATACAAAGTTCATTTCCAGTCTAAGATTGGACCAGACCGAGGGTTACAGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATC
* * * * ** *
15578999 AGCAGCATGCAGAGGGGGACCCAACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
776 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
15579064 GTGCCCGCACGCTTGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
15579123 GCATAGGGAGTTCATTCCCAATCTAAGATTGGACCATACTAAGGGTTGTGGCGGCACAGGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15579188 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
15579253 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGTGGGG-CAGGGGGTGTGCGCACATGATGTGA
131 ACCTGACCGGCGACATTGGGGTTCTGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
15579317 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15579382 CCCCCTTAAAGAGCAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
260 CCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15579447 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15579512 TGCATGCCAA-AAAAATACAGGGATCACA-CATACCAAGTTTGGGGCCAAAATTCATTCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACATC-TACCAAGTTTGGGGCCGAAA--CA-TCCGAAAA
* * * * * *
15579575 AGTTTT-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCG
450 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15579639 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
15579704 ATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
15579769 GCATCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCGTCCACCCGCCCGTCCGCTTGTTTCGTCGG
645 GCATCCCGTCTCTCTGGCCG-GGTAGTG-CTGCCC--CCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
15579834 TTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGGTAGCA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
* * ** *
15579898 GGATCGACAGCATGCAGAGGGGGACCCGATTAATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
15579963 GTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCGTTCCCCGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
15580027 GCATTCAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGCAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
15580091 GCTCGGGCATGTGCCGGTGCTGTATTTTACTTCATC-GAG-A--A-------ACCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
** * *
15580145 AACCTGACCGATGACATTGGGGTTCTGACGATCGGTAGGGCCGGGGGGGTGCGCGCACATGATGT
130 AACCTGACCGGCGACATTGGGGTTCTGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15580210 GCAATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15580275 CACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15580340 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAACTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *** *
15580405 GTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAA---CATCCGAAAA
* **
15580470 AATTTTAAAAAATACCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15580535 TGCCA-CAAAACTTCACATGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGG
515 TGCCATC-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15580599 CATTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGCCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
15580664 GGCATTCGGTCTCTTTGGCCGGCGTAATGCTG-GCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTT
644 CGCATCCCGTCTCTCTGGCCGG-GTAGTGCTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** * * * * *
15580728 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC-AGGGGTTGCAGCAGCAA
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTACGGCAGCAG
* * *
15580792 GATCGGCAGCACGCAGAGGGGGACCTTG-TCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCA
772 GATCGGCAGCACGCAGAGGGGGACC-CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* **
15580856 GCTGAGCACCCGCACTTTCGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AG--T--
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15580905 ---T-C--A-TTC--T--CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
15580959 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGCACTATCGTTAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * *
15581023 ACCTGACCGGAGGCATTAGGGTTCCGATGATCGACGAGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGACATTGGGGTTCTGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
15581088 CGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15581153 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15581218 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *** *
15581283 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAA---CATCCGAAAAA
* * * *
15581348 ATTTTAAAAAATACCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15581413 GCCA-CGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGC
516 GCCATC-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15581477 ATTGGCGTGCAGAAATATGAAGATGTGCC-AAGACCCACCTACCACTCTATCGATCCACGGCTTG
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAA-ACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15581541 CGCATCCCGTCTCTCTGGTCGGTGTAGTGC--CCGTCCACCCGTCCGCCCGCTTGTTTCGTCGGT
644 CGCATCCCGTCTCTCTGGCCGG-GTAGTGCTGCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
15581604 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCTG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAG
* * * * * * * * * *
15581669 GATCGGCAGCACGTAGAGGGGGACACGGTCGATCCTCGACTTACACATCCCGTCTCTCTGGTCGG
772 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
15581734 CTGAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15581797 G
1 G
15581798 ATTGGATCGG
Statistics
Matches: 3924, Mismatches: 469, Indels: 167
0.86 0.10 0.04
Matches are distributed among these distances:
867 71 0.02
868 2 0.00
869 1 0.00
870 1 0.00
871 3 0.00
872 1 0.00
874 1 0.00
875 1 0.00
876 3 0.00
877 685 0.17
878 2 0.00
879 1 0.00
880 1 0.00
882 1 0.00
888 2 0.00
890 1 0.00
891 1 0.00
892 43 0.01
893 379 0.10
894 123 0.03
895 148 0.04
896 198 0.05
897 543 0.14
898 383 0.10
899 254 0.06
900 128 0.03
901 456 0.12
902 8 0.00
903 2 0.00
904 232 0.06
905 236 0.06
906 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGACATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACATCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
CAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGGTAGTGCTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15580030 original size:26 final size:26
Alignment explanation
Indices: 15580001--15580053 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15579991 GTTGACTTAG
* * *
15580001 GCATACGGAGTTCGTTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15580027 GCATTCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15580053 G
1 G
15580054 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15582211 original size:26 final size:26
Alignment explanation
Indices: 15582175--15582227 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15582165 GTTGACTTAG
15582175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15582201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15582227 G
1 G
15582228 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15583969 original size:26 final size:26
Alignment explanation
Indices: 15583940--15583992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15583930 GTTGACTTAG
*
15583940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15583966 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15583992 G
1 G
15583993 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15584881 original size:26 final size:26
Alignment explanation
Indices: 15584844--15584896 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584834 GTTAACTTAG
*
15584844 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15584870 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15584896 G
1 G
15584897 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15586638 original size:26 final size:26
Alignment explanation
Indices: 15586600--15586652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586590 GTTGACCTTG
*
15586600 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15586626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15586652 G
1 G
15586653 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15588425 original size:26 final size:26
Alignment explanation
Indices: 15588396--15588446 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588386 GTTGACTTAG
*
15588396 GCATACAGAGTTCATTCCCAGTCTAC
1 GCATACAGAGTTCATTCCCAATCTAC
*
15588422 GCATACGGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
15588447 AGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAC
Found at i:15588648 original size:896 final size:894
Alignment explanation
Indices: 15585735--15609581 Score: 27461
Period size: 894 Copynumber: 26.8 Consensus size: 894
15585725 GTTGACTTAG
* * * * *
15585735 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
15585800 CTCAGGCAAGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
**
15585865 ACCTGACCGGTGGCATTGGGGTTCC-AGCGAT--------CGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15585921 CAATGGGTGCTCGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15585986 ACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15586051 GGGGACACTTTTTTCAAAAGGTCGCAAAATCTTGTGCACTTCGAGTTTTTTGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15586116 TGCATAG-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCTAAAAATCCTTCTGAAAA
390 TGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
15586180 AATTTTTAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15586245 T-CTAAGGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAATAATGG
518 TGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15586309 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCATATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** **
15586374 CGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCACCCGCCTATCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCG-C---CCGCTCGTTTCGTCGGTTGGCTT
* ** * * * * *
15586439 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAAATCC-AATCGACGGTTACGGTAGCAGGATCG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
15586503 GCAGCACGCAGAGCGAGACCCGGTCGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCTGGTTGAG
772 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
15586568 CAG-CCGCACGTTCGTTTCGTGGGTTGACCTT-GGCATACGGGGTTCATTCCCAGTCTAA
837 C-GCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15586626 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
15586691 CTCTAGTATGTGTTGGTGCCCCATTTTTCTTCGTCGGGGCACCATCGTCGGAGTGA-CGCCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-CATCGCCGGAG
* * *
15586755 AACCTGACCGACGGCATTGGGGTTTCGACAATCGGGGGTGCCGGGGGGTGTGTGCGCACTTGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGG-GTGTGCGCACATGATG
* * *
15586820 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACCC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15586885 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15586950 ATGGGGACACTTTTTTGAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15587014 TGTGCATGCCAACCAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15587079 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15587144 TTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15587209 CATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15587274 CGCATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCGCTCTCATTTCATCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCG-CC-CG--CTCGTTTCGTCGGTTGGCTT
* * *
15587339 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCAAGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* ** ** * * * * *
15587404 CAGCATGCAGAGGAAGACTTGGACTATCCCCGGCTTGCGCATCCCGCCCCTTTGGCTGGCGGAGC
773 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * **
15587469 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGAAAGAGTTCATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15587526 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
15587591 CTCGGGCATGTGTTGGTGCTGCTTTTTTCTTGGTCGGGGCACCACCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
15587656 ACCTGACC-AGCGACATTGGGGTTCCGACGATCGGGGGGCTGGGGGGCGGTGTGCGCACATGATG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGG-GGTGTGCGCACATGATG
15587720 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15587785 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15587850 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
15587915 TGTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
388 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
15587979 AAAATTTTACAAAATCCGAAACCCCGAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
15588044 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15588109 GCATTGCCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15588174 GCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGTCC-CCCGCTCGTTTCGTCGGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
15588238 CATACGGAATTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCAGCAA
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * * * *
15588303 CACGTTGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATTCCACCCTTCTGGCGGGCTGAGCACC
776 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*** * *
15588368 TATACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAC
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15588422 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
15588487 CTCGGGCATATGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGAAGCAT-GCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
15588551 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGTGGGGCCGGGGGGGGGTGTACGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGGGGGTGTGCGCACATGATG
** *
15588616 TGCGAAAGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15588681 ACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15588746 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15588811 T-TCCATGCCAAAAAAAATACAAGTATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
15588875 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTAAAAAATAGAAAATGAGTCCTC
453 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15588940 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG-ATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15589004 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15589069 CGCATCCCATCTCTCTGGCCGACGTA--G--CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * *
15589130 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGAAAGCGGGATCGGTAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* ** * * * ** * *
15589195 ACCCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTAGTCGATTGAGCACCT
777 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
15589260 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
15589312 G-AT-C--AG---A----C---C--AGAT----------CGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
15589351 CTCGGGCATGTGTTGGTGCCGGATTTTTATTCGTCGGGGCACCATCGTCGGAGCATCGCCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * * * *
15589416 ACCTGAATGACGACTTTGAGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTCCGCACTTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
15589481 CGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15589546 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGTCAGTAGCCATTAAAGTGTC-GAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
*
15589610 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15589675 TTGCATGCCAAAAAAAATACAAGGATCACATCTACTAGGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15589740 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15589805 CGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * * *
15589870 ATTCGCGCACAAAAATATGAAGACGTGCCTAAACCCACCTACCACTCTATCGCTCCACAGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
15589935 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCTGTTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGTCCGCCCG-C---TCGTTTCGTCGGTTGG
* * *
15590000 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCACCAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** * *
15590065 CAGCACCACGTAGATGGGGACCCGGTCGATCCTTGGCTTGCGTATCCCGCCCCTCTGGCCAGCTG
770 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
15590130 AGC-CACCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 AGCGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15590190 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15590255 CTCGGGCATGTGTTGGTGTCGCATTTTTTCTTCGTCGGGG-A--A----C----CATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * ** *
15590309 AACCTGAGC-A-GTGACATTAGGGTTCCGGTGATCGAGGGGGCCAGGGGGGTGTGCGCACATGAT
130 AACCTGACCGACG-G-CATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGAT
* *
15590372 GTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15590437 GACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGT
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15590502 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
* * *
15590567 TTT-TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
15590631 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
15590696 TCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15590761 TGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15590826 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGTCCGCCCG----CTCGTTTCGTCGGT
* **
15590891 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATTGAGGGTTGCGGCAGCAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * * * * *
15590956 GATCGACAGCACGCAGAAGGGGACCCGATTGATCCCCGACTTGTGCATCCCACCCCTCTAGCCGA
767 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
15591021 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15591084 GCATACAGAGATCATTCCCAGTCTAAGATCGGA-CAGGATCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * * ** * *
15591148 GCTCAGGCATGTGTTGGCGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCACCATCGAAT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
15591213 ATCCTGATTC-ACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGT
130 AACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * * ***
15591277 GCGATGGGTGTCCGCATATGATGTGCGATAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGG
194 GCGAT-GG-GT--GC---TG--GTAC--T------TG-GC---CCT--TAT---ATTGG-CCCCC
* * * * * * * * ** *
15591342 TACTTGGCCCT--T-ATA--TTG-G-CCTC-CTATCCCTCATCAA-A-C-CTCGAGAACTCACAC
232 TA--T--CCCTCATCAAACCTCGAGAACTCAC-A-CCCCCTTAAAGAGCATTTGAGATTTTACA-
** *** * * * ** * * * * * ** * ** * * *
15591396 CCCTTTAAAGAACATTTGAAATTTTATAGGTTTGCTGTCACTAGCCATTAAAGTGTCTAAAATGG
290 -GGTTTGCTG-CCAGTAGCCA--TTA-AAGTGT-CTG-AAATGGGGA--CACTTTTTTCAAATGG
* * * * * * * * * *
15591461 -CGAC--ACTTTTTTCAAATGGTTACAAAATCTTGTACACTAGAGTTTTTAGCTGAATTTTTTTG
346 TC-ACAAAATCTTGT-ACA--CTT-C-GAGT-TTTTA-GCT-GA----A--------TTTTTTTG
* * *
15591523 TGCATGCCAACAAAAATACAAGGATCACATTTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
15591588 A-TTT------T-----------AAA----C---AA----G-AAAAT-------GAGTCGTCTTG
455 ATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15591616 CCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** *
15591681 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAACATGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15591746 ATCCCGTCTCTCTGGCCCG-CATAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
650 ATCCCGTCTCTCTGG-CCGACGTAGT----G----CCCGTCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * * * *
15591810 TTAGGCATACAGAGTTCATTCCCTA-TCTAAGATTAGATCAGACTGAGGGTTGCGGGAGCAAGAT
706 TTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * ** * ** * *
15591874 CGACAGCATGCAGAAAGGGACCCGATCGATCCCCACCTTGGGCATCCCGCCCCTCTGGCTC-ACT
770 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCT
* *
15591938 GAGCGCCCACGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15591999 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTACGACAACACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15592064 CT-GCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCTCCATCGCCGGAGCATCGTCGGAG
66 CTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** **
15592128 AACCTGACCTG-CGGCATTGGGGTTCCGACGATCGAGGGGGCC-AGGGGGTGTGCATAGGTGATG
130 AACCTGACC-GACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
15592191 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGTCCTCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
15592256 ACGCCCCTTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
15592321 ATGGGCACACTTTCTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15592386 TGTGCGA-GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AA
388 TGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* **
15592449 AAAAGTTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAA-TTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
15592514 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGGCCATTATATGAATTTACAAG-CATAAAACT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15592578 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15592643 TGCGCATCCCGTCTCTTTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTAAG
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * *
15592708 GCATACGAAGTTCATTCGTAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATTGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
15592773 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCATGCACATCCCACCCCTCTGGCCGACTGAACGC
775 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
15592838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA----ATT--CA---T--
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15592882 ---T-C------C--T---AGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
15592932 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * ** *
15592997 ACCT-AGCTGGCGCCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCACACAACATTTG
131 ACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
15593061 CGATGGGTGCTGGTACTTAGACCATATATTCAG-CCCCTATCCCTCATCAAACCTCAAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15593125 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15593190 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15593255 GTGCATG-CAAAAAAAAGTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
389 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15593319 AAATTTTAAAAAATCCAGAACC-CTAAAAAGTTTCGAAAATCATGAAAAATATAAAACGAGTCGT
453 AAATTTTAAAAAATCC-GAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15593383 CTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15593448 GCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATACCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
15593513 GCACATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCTGCCCGCCCGCTCGCTCGTTAATCGGTTG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--T--CCGCCCGCTCG-T--TTCGTCGGTTG
* * * * *
15593578 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGACTGAGGCTTGCGGTAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
* ** * * * *
15593643 TTGATAGCACACAGAGGGGGACCC-GACTGATCCCCGGCTTGTGCATCCCG-CCCTCTGGCCGGT
769 TCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
15593706 TGAGCACCCGCACGCTCAGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 TGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15593769 G-AT-TGGA---C--T----G-----GA-CTG---AG--C----GTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
15593808 CTCGAGCATGTGCTGGTGTCACATTTTTCTTCACCAGGGCACCA---T-----CA---CCGAATA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
15593862 ACCTGACTGACGGCATTGGGATTCCGGTGATCAGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
15593926 GATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15593991 CCCCCTTAAAGTGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15594056 GGGACATTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15594121 GCATGCCAA-AAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAGAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
15594185 TTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
15594250 CCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGAAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
15594315 TGGCACGCA-AAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15594379 CATCCCGTCTCTTTGGCC-AGCATAGTGCCCGCCCGCCCGGATGCCCGCTCGTTCTATCAGTTGG
649 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGTCCGCCC----GCTCG-T--TTC-GTCGGTTGG
* * * * * * *
15594443 CTTATGCATACGGAGTTCTTTCCCAGTCTAAGATCGAACCAGACCGAGCGTTGCGGTAGCAGCAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * ** * *
15594508 CGGCAGC-CTGCAGAGGGGGGCTCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCT
770 CGGCAGCAC-GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * *
15594572 GAGCGCCCGCACATTCGTTTCGTGGTTTGACATAGGCATACGGAGTTCATTCCTAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
15594633 GCATAAGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGCATTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15594698 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
15594763 ACCTGATCGGCAGCGTTGGGGTTTCC-ACGATCGAGGGGGCCGGGAGGGTGTGCGCCCATGATAT
131 ACCTGACCGACGGCATTGGGG-TTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
15594827 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCCAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15594892 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15594957 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15595022 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *
15595087 AATTTTAAAAAATCCCAAACCG-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15595151 TGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15595216 ATTGGCACGTA-AAAGTATGAAGATGTGCCTAAA-CCACTTACCACCCTATCGATCCACGGCTTG
583 ATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * *
15595279 CGCATCCTGTCTCTCTGGTTGACGTAGTGCCCACCCG-CCTGCCCACCCATTCGTTTTGTTGGTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGTCC-G-CC-CGC--TCGTTTCGTCGGTT
* * *
15595343 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
** * ** ** * * * *
15595408 ATCGATAGCATGCAGAGGGGGACCCAATCGATCCTTGGCTTGTGCATCCTGCCCCTCTGGTCGAC
768 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
15595473 TAAGTGTCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGG-GTTCATTCCCAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15595534 GCATACGGAGTTCATTCCCAGTCTAAGAT----------C-A-GGTTGCGGCAGCACAT-C----
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15595582 CTCTGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15595647 ACCTGACCGGCGGCATTGGGGTTCTGACAATCGGGGGGGTC-GGGGGGTGT-CTTCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGC-GCACATGATGT
* *
15595710 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15595775 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15595840 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15595904 TGTCCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15595969 AAATTATAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15596034 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCAATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15596099 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CTAGCACCCTATCGATCCACAGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15596163 CGCATCTCGTCTCTCTGGCCGGCATACTGCCCG-CCGCCCGTCCGCTCATTTCGTCGATTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCG--C--CCGCTCGTTTCGTCGGTTGGCTT
* * * * * * **
15596227 AGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGTAGGATCAA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * ** * * * ** * *
15596292 CAACACGCAGAGGGGGACCTGACCGATCCCTGACTTGCACATCTTG-CCCTCTAGCTGGCTGAGC
773 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15596356 GCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15596409 -C-TA---AG---------A-T-T--G--C--ACCGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
15596452 CTCAGGCATGTGCTGGTG-CGTATTTTTCTTCAG-CAGGGCACCATCG-CTAGAGGATCATCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGTC-GGAGCATCGCCGGA
* *
15596514 GAACCTGACC-AGCAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGAGGGTGTGCGCACATGAT
129 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGAT
* * *
15596578 GTGAGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15596643 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCC-GTAGCCATTAAAGTGTTTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15596706 AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
15596771 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** *
15596836 AAAATTTTAAAAAAATCTTGAACGGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCG
452 AAAATTTT-AAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15596901 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTAGAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15596966 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACTCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15597031 TGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCCGCCCATTCGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG---T-CCGCCCG--C--TCGTTTCGTCGGT
* * * * * *
15597096 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGACTGAATCGAGGGTTGTGGCAACAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
** * * * * **
15597160 GATCGATAGCATGCAGAGGGGGACCC-GACTGATCCCCGGCTTGTGCATCCCACCCCTCTGGTTG
767 GATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
15597224 GCTGAGTGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * ***
15597288 GCATGCGAAGTTCATTCCCAGTTTAAGATCAGATCAGATCGAGGGATATAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
15597353 CTCGGGCATGTGCTGGTGCCATATTTTTCTTTGCCGGGGCACCATCG-CTGGAGCATCACTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * ** *
15597417 AACTTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGACCGAGGGGGTGTGCGCACATGATG-
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
* *
15597481 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15597546 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15597611 T-GGGAGCACTTTTTTCACATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
324 TGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
15597675 TGTGCATGCCAAAAAAAATACAAAGGATCATGTCTACCTGGTTTGGGGCCAAAACTCCATCCGAA
388 TGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** ** * * * *
15597740 CAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTTGAAGATTGTCAAAAATAAAAAACGAGTCG
452 AAAATTTT-AAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
15597805 TCTTGCCATGAATCTTCACGTGAAGGCTTCAGGGACCACTATATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15597870 GGCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATACACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
15597935 TGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCTGCCCTCCCACCCGCCCGTTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CCGT-----CCGCCCGCTCGTTTCGTCGGT
* * * * *
15598000 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGATTGTGGCAGCAA
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * *
15598065 GATTGGCAGCAGGCAGAGGGGGACCC-GACTGTTCCCCGGCTTGCGCACCCCGCCCCTCTGGCTG
767 GATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
15598129 GCTGAGCACCCGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15598193 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15598258 CTCGGG-ATTGTGCTGGTACCGCATTTTTCTTCGTCGGGGTACCA---TC---G--T---CGGAG
66 CTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * * *
15598311 AACCTGGCCGATGGCATTGGGGTTCTGACGAACGGGGTGGCC-CGGGGGTGTACGCACGTGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
* * *
15598375 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCTCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15598440 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15598504 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15598569 GTGCATGCCAATAAAAATACAACGATCACGTCTACCAAGTTTCGGGACAAAAATCTTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
15598634 AATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAA-CTATGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTC
*
15598698 TTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15598763 CATTGGCATGCAGAAATAT-AAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCACGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15598827 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCTCACGCTCGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGTCCG--C-C-CGCTCGTTTCGTCGGTT
* * * * * *
15598892 -GCTTACGTATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGAAACCGAGGGTTAG-GGTAGTA
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-GACCGAGGGTT-GCGGCAGCA
* * * * *
15598954 GGATCGACAGCACGTAGAGGGGGACCCGGACGATCCCCGGCTTGCCCATCTCGCCCCTCTGGCCG
766 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
15599019 ACTGAGTGCCCGCACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15599083 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGCACCGAGGGTTGTGACAGCACGTGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
*
15599147 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG---CA----C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
15599201 AACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * * *
15599266 TGATGGTTGCTGGTGCTTTGCTCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15599331 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15599396 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTGTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * * * *
15599461 TTTATGCCAAAAAAAATATAAGGATCACGTCTACTAAGTTTGGTGCCAAAAATCGTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15599526 ATTTTAAAAAATCCCGAACCACATAAAGTTTTGAAAAGT-ATGAAAAATAGAAAATGAGTCGTCT
455 ATTTTAAAAAAT-CCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15599590 TGCCATGAAACTTAACGTGAACGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15599655 ATTGTCATGCAGAAATATGATGATGTGCCTAAACCCTCCTACCACCATATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15599720 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTTTC-CAATTGTTTCGTCAGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCC---CGC--TCGTTTCGTCGGTTGGCTT
* * * * * * * * *
15599784 GGGTATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGGGGCAGTAGGATCGA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
15599849 CAGCACGCAGAGGGGGACCCAGACGATCCCCAGTTTGCGCATCCGGCCCCTCTGGCTGGCTGAAC
773 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
15599914 GCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAATTCATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15599971 G-ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGGGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15600035 CTTGGGCATGTGCTGGTGTCACATTTTTCTTC-ACTGGGGCACCATCG-CTAGAGCATCGCCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCGCCGGA
* *
15600098 AAACCTGACCGACGGCATTGGGATTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15600162 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15600227 CACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15600292 TAGGGACACTTTTCTT-AAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTT
324 TGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15600356 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAAATCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
15600421 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15600486 TTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15600551 CATTGGCATGAATAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15600616 CGCATCCCCTCTCTCTGGCCGACATAGTGCCCGCCCACCCTCCGCCCGTTTCGTCGGTTGGCTTA
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-TC-CGC-CCGCTCGTTTCGTCGGTTGGCTTA
* * * ** ** * * *
15600681 GGCATATGGAGTTCATTCCCAATCAAAGATCGGATTGGATTGAGGGTTGCGGTAGCAGCATC-AC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
15600745 TAGCACACAGAGAGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
774 -AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
15600810 GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CAAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
15600866 GCATACAGAGTTCATCCCCAGTCTAAGATCGGACCAGACCGAAGGTCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15600931 CTCGAGCATGTGC-GGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** * * *
15600995 ACTTGACCGGCGGCATTGGGGTTCTGGTGATCGAGGGGGCCGAGGGGGTGTACGCACATGATGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15601060 TGATGGGTGCTGGTAATTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15601125 ACCCCCTTAAAAAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15601190 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15601255 TGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15601320 ATTTTAAAAATTCTGATCCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 ATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15601385 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * **
15601450 TAGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATAGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15601515 ATCCCGTCTCTCTGGCTGGA-GTAGTGCCCACCCGCCCGCTCACCCGCTCGTTTCGTCGATTGGC
650 ATCCCGTCTCTCTGGC-CGACGTAGTG----CCCGTCCG----CCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15601579 TTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGTAGCAGTAGCCA-GAT
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG-CAGGAT
** * * *** * ** * * **
15601643 CGATAGCATGCAGAGTGGGACTTAGCCGATCCCTAGCTTGCACATCCTGCCCCTCTGGCTAGCTG
770 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
15601708 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15601768 G-AT-C--AG---------A--C------C-G----GACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15601807 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
15601872 ACCTGACC-AGCGGCATTAGGGTTCTAACAATCGGGTGGGCC-AGGGGGTGTGCGCACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGT
*
15601935 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15602000 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15602064 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15602129 ATGCATTCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAA-TGCCTTCCG-AA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAA
* * * * *
15602192 AAATTTTAAGAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAATTAAAAAACGAGTCATC
453 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15602257 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
15602322 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACAAAACACACTATCGATCCAAGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15602387 CGCATCCCGTCTCTCTGGCC-AGCATAGAGCCCGCTGGCCCGCCAGCCCGCTCGTTTCGTCGGTT
647 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-T------CC-GCCCGCTCGTTTCGTCGGTT
* * * * * * * *
15602451 GGCTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGTGACAGTAGG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
15602516 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTAGCCGGT
768 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * ** *
15602581 TGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTCA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * * *
15602643 GCATATGGAATTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * **
15602708 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** *
15602773 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGG--TTGGGGGTGTACGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
15602836 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15602901 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15602966 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15603030 GCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
15603095 GTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTG
456 TTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * **
15603160 CCATGAAAATGCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAACAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15603225 TGGCATGCCGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
15603290 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCACGCCCGCTTGCTCGTTTCGTCTTTT
650 ATCCCGTCTCTCTGGCCGACGTAGT----GCCCG---TC-CG-CC-C--GCTCGTTTCGTCGGTT
* * * * * *
15603355 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
* * ** * ** * * * * *
15603420 ATCAGTAGCACATAGAGAGACACCAGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGGT
768 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
15603485 TGAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * * *
15603547 GCATGTGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAACAAATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15603612 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCGAAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15603677 ACCTGACCGACGGCATTGGAGTTCTGACAATCAGGTGTGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15603741 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15603806 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15603871 GGGGATACTTTTTTCAAATGGGCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15603936 TGCATGCCCATAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15604001 ATTTTAAAAAATCCCGAACAGCAAAAGGTTTCAAAATTTGTGGAAAATAGAAAACGAGTCGTCCT
455 ATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15604066 GCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15604131 TTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCCCCCTATCGATCCACAGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
15604196 CATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** * * *
15604261 GCAGAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGTTGCGACAACAGGATCGGCAACAC
714 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
** * * * *
15604326 ATAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCG-CCCTCCTAGCCGGCTGAGCGCCCG
779 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCG
*
15604390 CACGCTCG-TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15604441 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15604506 CTTGGGCATGTGCTGGTGCCGCATTTTTC-T--TC---G------C--CGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15604557 ACCTGACCGGCGGCATTGAGGTTTCGACAATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15604621 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15604686 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15604751 GGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
15604816 TGCATGCCAACAAAAACATAAGGATCACGTCTACCAAGTTTGGGG-CAAAACGGCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15604880 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGATACATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15604945 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15605010 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15605075 CATCCCGTCTCTCTAGCTGACGTAGTGCCCGATCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-T-------CCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * * *
15605140 TTAGGCGTATGGAGTTCATTCCCATTCTAAGATCGGACTGAACTGAGGGTTGTGGTAGTAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* *
15605205 GGCAGCACGTAGAGGGGGATCTAACTGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTTG
771 GGCAGCACGCAGA-GGGG--------GA--CCCG--GT-CG-AT-----CCC-C--G---GCTTG
* * * *
15605270 CACATCCCGCCCCTCAGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAT
810 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
15605335 GTAGTTCGTTCCCAGTCTAA
875 GGAGTTCATTCCCAGTCTAA
* * ** * * *
15605355 GCATACGGAGTTCATTCCCAGTCTCAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15605420 CTCGGGCATGTGCTGGTGCCACATTTTTCATCGTTGGGGCACCA---TC---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
15605474 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCACAAATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
15605538 CGATGGGTGCTGATACTTGGGCCTTATATTGTCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15605603 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15605668 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15605733 TGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * *
15605798 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCTTGAAAAGTACAAAACGAGTCATCTT
455 ATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15605863 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATTGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15605928 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATC-ATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * ** * *
15605992 CATCCTGTTTCTCTGGCCGGTGTAGTGCCCGCCCACCCATTTGTTTCATCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
15606057 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGAAGCAGGATTGACAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * *
15606122 GAAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
779 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
15606187 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
15606238 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *** * *
15606303 CTCGGGCATGTGCTGCTGTCGTATTTTTATTTGTCGGGGCACCATAACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
15606368 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCGAGGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGGTGTGCGCACATGATGT
** ** * *
15606433 GTTATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15606498 CACCCCCATAAAGAGCGTTGGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15606563 TGGGGACACATTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15606627 ATGAATGCCAACAAAAATACAAGGATCACGACTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15606692 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15606757 TGCGACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTGCAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15606822 ATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *** ** *
15606887 GCATCCCGTCTATCTATTCGGTGTAGTGCCCGCATGCCCGCCTACCCGGTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--T--CCG----CCCGCTCGTTTCGTCGGTTGG
* * * *
15606952 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAGGACCTGACCGAGGGTTGTGGCAGCAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** *
15607017 ----TG---G--TAGGGGGACCCAG-CTGATCCCAGGCTTATGCATCCCGCCCCTCTGGCCGACT
770 CGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
15607072 GAGTGGCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15607133 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15607198 CTCGGACATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15607263 ACCTGACCGTCGGCATCGGGGTTCCAATGATCGGGGTGGCCGAGGGGGGGTGTGCACACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCC--GGGGGGGTGTGCGCACATGATG
*
15607328 TGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15607393 ACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15607458 ATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15607523 TGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * * *
15607588 AAATTTAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCTTGAAAAGTACAAAACGAGTCATC
453 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15607653 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATTG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15607718 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * * *
15607783 CGCATCTCGTCTCTCTGG-CTAGCGTTGTGCCCACCCGCCCACTCATTTTGTCTGTTGGCTTAGG
647 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
15607847 CGTACGGAGTTCACTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
15607912 CACACAGAGTGGGACCCAGTCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAGCGTC
776 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
15607976 CGCACGCTCGTTTCGTGGGTTTACTTTGGCATACGGAGTTCATTCTCAGTCTAA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15608030 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
15608095 C-CTGGGCATGTGCTGGTGTCGCATTTTTCTTCCCCGGGGCACCATCG-CTGGAGCATCACCGGA
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGA
* **
15608158 GAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGTACACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * **
15608222 TGTGATCGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCATCCCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
15608287 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15608352 ATGGGGACACTTTCTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15608417 TATGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
15608482 AAATTTTAAAAAATCCCGAAACGTAAAACGTTTCAAAAATCATGAAAAATAGAAAACGA---G--
453 AAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
15608542 -T--CAT----C-T----T-----C--------CC-----ATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15608577 CATTGGCACACAGAAATAAGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15608642 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
15608707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGGGGCAGCAGTATCGA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* ** * *
15608772 CAGCACACAGA-GGGGACCCGACCGATCCCCGGGTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
773 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15608836 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
15608893 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15608958 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * *
15609023 ACCTGATTGACGGCATTGGGGTTTCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** * * ** *
15609087 TGATGCATGGTGGTATTTCACCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15609152 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15609217 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * **
15609282 TGTGTGCCAACAAAAATACAAGGATCACGTTTATCATGTCTGGGGTGAAAACTCCTTCC-AAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * **
15609346 TATTCTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACCTGTCGTCT
455 -ATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15609411 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACGAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15609476 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15609541 GCATCCCGTCTCTCTAGCCGACGCAGTGTCCGCCCGCCCGC
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGC
15609582 CCACCCACCC
Statistics
Matches: 19796, Mismatches: 2453, Indels: 1411
0.84 0.10 0.06
Matches are distributed among these distances:
857 1 0.00
859 115 0.01
860 3 0.00
861 1 0.00
862 38 0.00
863 1061 0.05
864 588 0.03
865 281 0.01
866 11 0.00
867 25 0.00
868 611 0.03
869 362 0.02
870 151 0.01
871 14 0.00
872 2 0.00
873 26 0.00
874 90 0.00
875 664 0.03
876 314 0.02
877 246 0.01
878 60 0.00
879 342 0.02
880 309 0.02
881 8 0.00
882 12 0.00
883 472 0.02
884 278 0.01
885 24 0.00
886 18 0.00
887 204 0.01
888 184 0.01
889 107 0.01
890 512 0.03
891 842 0.04
892 61 0.00
893 142 0.01
894 1695 0.09
895 889 0.04
896 1361 0.07
897 1209 0.06
898 216 0.01
899 164 0.01
900 1130 0.06
901 930 0.05
902 447 0.02
903 533 0.03
904 823 0.04
905 263 0.01
906 211 0.01
907 265 0.01
908 15 0.00
909 83 0.00
910 3 0.00
911 1 0.00
912 3 0.00
913 38 0.00
914 133 0.01
915 493 0.02
916 14 0.00
917 319 0.02
918 177 0.01
919 12 0.00
920 4 0.00
921 2 0.00
922 6 0.00
923 1 0.00
924 2 0.00
925 10 0.00
926 4 0.00
927 10 0.00
928 13 0.00
929 5 0.00
930 6 0.00
931 6 0.00
932 5 0.00
933 9 0.00
934 10 0.00
935 12 0.00
936 2 0.00
937 1 0.00
938 3 0.00
939 4 0.00
940 2 0.00
941 2 0.00
946 1 0.00
952 9 0.00
953 61 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15590193 original size:26 final size:26
Alignment explanation
Indices: 15590164--15590216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15590154 GTTGACTTAG
15590164 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
15590190 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15590216 G
1 G
15590217 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15591098 original size:26 final size:26
Alignment explanation
Indices: 15591058--15591110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15591048 GTTGACTTAG
* *
15591058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15591084 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15591110 G
1 G
15591111 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:15591324 original size:27 final size:26
Alignment explanation
Indices: 15591256--15591335 Score: 110
Period size: 24 Copynumber: 3.1 Consensus size: 26
15591246 GGGGGGGCTG
15591256 GGGGGTGTGCGCACATGATGTGCGAT
1 GGGGGTGTGCGCACATGATGTGCGAT
* *
15591282 --GGGTGTCCGCATATGATGTGCGAT
1 GGGGGTGTGCGCACATGATGTGCGAT
*
15591306 AGGGGGTGTGCGTACATGATGTGCGAT
1 -GGGGGTGTGCGCACATGATGTGCGAT
15591333 GGG
1 GGG
15591336 TGCTGGTACT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
24 22 0.48
26 3 0.07
27 21 0.46
ACGTcount: A:0.16, C:0.14, G:0.45, T:0.25
Consensus pattern (26 bp):
GGGGGTGTGCGCACATGATGTGCGAT
Found at i:15591344 original size:24 final size:23
Alignment explanation
Indices: 15591258--15591344 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 23
15591248 GGGGGCTGGG
*
15591258 GGGTGTGCGCACATGATGTGCGAT
1 GGGTGTG-GTACATGATGTGCGAT
* * *
15591282 GGGTGTCCGCATATGATGTGCGAT
1 GGGTGT-GGTACATGATGTGCGAT
15591306 AGGGGGTGTGCGTACATGATGTGCGAT
1 ---GGGTGTG-GTACATGATGTGCGAT
15591333 GGGTGCTGGTAC
1 GGGTG-TGGTAC
15591345 TTGGCCCTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
24 30 0.58
25 2 0.04
27 20 0.38
ACGTcount: A:0.16, C:0.15, G:0.43, T:0.26
Consensus pattern (23 bp):
GGGTGTGGTACATGATGTGCGAT
Found at i:15592009 original size:26 final size:26
Alignment explanation
Indices: 15591973--15592025 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15591963 GTTGACTTAG
15591973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15591999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15592025 G
1 G
15592026 ACCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15595537 original size:25 final size:26
Alignment explanation
Indices: 15595509--15595560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15595499 GTTGACTTAG
15595509 GCATACGG-GTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15595534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15595560 G
1 G
15595561 ATCAGGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15598196 original size:26 final size:26
Alignment explanation
Indices: 15598167--15598219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598157 GTTGACTTAG
*
15598167 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15598193 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15598219 G
1 G
15598220 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15599093 original size:26 final size:26
Alignment explanation
Indices: 15599057--15599109 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15599047 GTTGACTTAG
15599057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15599083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15599109 G
1 G
15599110 ATCAGACTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15600422 original size:897 final size:897
Alignment explanation
Indices: 15596387--15609579 Score: 16154
Period size: 897 Copynumber: 14.8 Consensus size: 897
15596377 GTTGACTTAG
* * * * *
15596387 GCATACGGAGTTCATTCCCAGTCTAAGATTGCACCGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
15596452 CTCAGGCATGTGCTGGTG-CGTATTTTTCTTCAGC-AGGGCACCATCGCTAGAGGATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC--CTGGGGCACCATCGCTGGAGCATCGCCGGAG
*
15596515 AACCTGACC-AGCAGCATTGGGGTTCCGACGATCGGAGGGGCCGGGAGGGTGTGCGCACATGATG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGG-GGGGCCGGG-GGGTGTGCGCACATGATG
* * *
15596579 TGAGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15596644 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCC-GTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15596707 ATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15596772 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * * *
15596837 AAATTTTAAAAAAATCTTGAACGGTAAAAAGTTTT-GAAAATCGTGAAAAATAAAAAACGAGTCG
451 AAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15596901 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTAGAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15596966 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACTCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15597031 TGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCCGCCCATTCGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG--C--TCGTTTCGTCGGT
* * * *
15597096 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGA-CTGAATCGAGGGTTGTGGCAACA
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGTGGCAGCA
* * * * **
15597159 GGATCGATAGCATGCAGAGGGGGACCC-GACTGATCCCCGGCTTGTGCATCCCACCCCTCTGGTT
769 GGATCGACAGCACGCAGAGGGGGACCCAGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
15597223 GGCTGAGTGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTCCATTCCCAGTCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * ***
15597288 GCATGCGAAGTTCATTCCCAGTTTAAGATCAGATCAGATCGAGGGATATAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
15597353 CTCGGGCATGTGCTGGTGCCATATTTTTCTTTGCC-GGGGCACCATCGCTGGAGCATCACTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TT-CCTGGGGCACCATCGCTGGAGCATCGCCGGAG
* * **
15597417 AACTTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGACCGAGGGGGTGTGCGCACATGATG-
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGT
* *
15597481 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15597546 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15597611 T-GGGAGCACTTTTTTCACATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 TGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
15597675 TGTGCATGCCAAAAAAAATACAAAGGATCATGTCTACCTGGTTTGGGGCCAAAACTCCATCCGAA
386 TGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * * * *
15597740 CAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTT-GAAGATTGTCAAAAATAAAAAACGAGTC
450 AAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
15597804 GTCTTGCCATGAATCTTCACGTGAAGGCTTCAGGGACCACTATATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
15597869 TGGCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCAACCACCCTATCGATACACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
15597934 TTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCTGCCCTCCCACCCGCCCGTTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG--C--TCGTTTCGTCGG
* * * * *
15597999 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGATTGTGGCAGCA
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCA
* * * * * * *
15598064 AGATTGGCAGCAGGCAGAGGGGGACCC-GACTGTTCCCCGGCTTGCGCACCCCGCCCCTCTGGCT
769 GGATCGACAGCACGCAGAGGGGGACCCAGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
15598128 GGCTGAGCACCCGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15598193 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15598258 CTCGGG-ATTGTGCTGGTACCGCATTTTTCTTCGTCGGGGTACCAT--C----G--T---CGGAG
66 CTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCTGGAGCATCGCCGGAG
* * * * * * *
15598311 AACCTGGCCGATGGCATTGGGGTTCTGACGAACGGGGTGGCCCGGGGGTGTACGCACGTGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTG
* * *
15598376 CGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCTCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15598441 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15598505 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
15598570 TGCATGCCAATAAAAATACAACGATCACGTCTACCAAGTTTCGGGACAAAAATCTTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15598635 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAACT-ATGAAAAATAGAAAATGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15598699 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15598764 ATTGGCATGCAGAAATAT-AAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 ATTGGCATGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15598828 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCTCACGCTCGTTTCATCGGTT-
647 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTG
* * * * * * * *
15598892 GCTTACGTATACGGAGTTCATTCCCAGTCTAAGATTGGACGAAACCGAGGGTTAG-GGTAGTAGG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT-GTGGCAGCAGG
* * * * *
15598956 ATCGACAGCACGTAGAGGGGGACCCGGACGATCCCCGGCTTGCCCATCTCGCCCCTCTGGCCGAC
771 ATCGACAGCACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15599021 TGAGTGCCCGCACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15599083 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAGGGTTGTGACAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15599148 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT-C----G-----TCG-AGGCACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCTGG-AGCATCGCCGGAGA
* *
15599202 ACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * * * * *
15599267 GATGGTTGCTGGTGCTTTGCTCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15599332 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15599397 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * * * * * *
15599462 TTATGCCAAAAAAAATATAAGGATCACGTCTACTAAGTTTGGTGCCAAAAATCGTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
15599527 TTTTAAAAAATCCCGAACCACATAAAGTTTTGAAAAGT-ATGAAAAATAGAAAATGAGTCGTCTT
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
15599591 GCCATGAAACTTAACGTGAACGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15599656 TTGTCATGCAGAAATATGATGATGTGCCTAAACCCTCCTACCACCATATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** * * *
15599721 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTTTCCAATTGTTTCGTCAGTTGGCTTGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15599786 GTATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGGGGCAGTAGGATCGACA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
15599851 GCACGCAGAGGGGGACCCAGACGATCCCCAGTTTGCGCATCCGGCCCCTCTGGCTGGCTGAACGC
778 GCACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
15599916 CAGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAATTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15599971 G-ATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGGGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15600035 CTTGGGCATGTGCTGGTGTCACATTTTTCTTCACTGGGGCACCATCGCTAGAGCATCGCCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTGGGGCACCATCGCTGGAGCATCGCCGGAGA
* *
15600100 ACCTGACCGACGGCATTGGGATTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15600165 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15600230 CCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTGAAATAG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15600295 GGACACTTTTCTT-AAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGT
325 GGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15600359 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAAATCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15600424 TTTTAAAAAATCCTGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15600488 GCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15600553 TTGGCATGAATAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15600618 CATCCCCTCTCTCTGGCCGACATAGTGCCCGCCCACCCTCCGCCCGTTTCGTCGGTTGGCTTAGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *** * * * *
15600683 CATATGGAGTTCATTCCCAATCAAAGATCGGATTGGATTGAGGGTTGCGGTAGCAGCATC-ACTA
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC-A
* * * *
15600747 GCACACAGAGAGGGACCC-GATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
778 GCACGCAGAGGGGGACCCAGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
15600811 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CAAGTCTAA
842 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
15600866 GCATACAGAGTTCATCCCCAGTCTAAGATCGGACCAGACCGAAGGTCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15600931 CTCGAGCATGTGC-GGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * ** * *
15600995 ACTTGACCGGCGGCATTGGGGTTCTGGTGATCGAGGGGGCCGAGGGGGTGTACGCACATGATGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
15601060 TGATGGGTGCTGGTAATTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15601125 ACCCCCTTAAAAAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15601190 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15601255 TGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15601320 ATTTT-AAAAATTCTGATCCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15601383 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * **
15601448 ATTAGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATAGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15601513 GCATCCCGTCTCTCTGGCTGGA-GTAGTGCCCACCCGCCCGCTCACCCGCTCGTTTCGTCGATTG
648 GCATCCCGTCTCTCTGGC-CGACGTAGTG----CCCGCCCGC-CCCCCGCTCGTTTCGTCGGTTG
* * * * * * ** *
15601577 GCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGTAGCAGTAGCCA-G
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAG-CAGG
* * * ** * ** * * **
15601641 ATCGATAGCATGCAGAGTGGGACTTAGCCGATCCCTAGCTTGCACATCCTGCCCCTCTGGCTAGC
771 ATCGACAGCACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
15601706 TGAGTGCCCGCACGCTCGTTTCATGGGTTGAC-T-----TA--G-G--CA-T---A--C---
836 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15601748 G---A---AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15601807 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-ATCGGAGCATCGCCTGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTGGGGCACCATCGCT-GGAGCATCGCCGGAG
* ** * *
15601871 AACCTGACC-AGCGGCATTAGGGTTCTAACAATCGGGTGGGCCAGGGGGTGTGCGCACATGATGT
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGT
*
15601935 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15602000 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15602064 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15602129 ATGCATTCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAA-TGCCTTCCG-AA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAA
* * * * *
15602192 AAATTTTAAGAAATCCCAAACCGCAAAAAG-TTTCAAAAATCGTGAAAATTAAAAAACGAGTCAT
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15602256 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** ** * * *
15602321 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACAAAACACACTATCGATCCAAGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15602386 GCGCATCCCGTCTCTCTGGCC-AGCATAGAGCCCGCTGGCCCGCCAGCCCGCTCGTTTCGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTG-CC-C--GCCCGCC-CCCCGCTCGTTTCGTCGGT
* * * ** * *
15602450 TGGCTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACCAAGGGTTGTGACAGTA
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGTGGCAGCA
* * * * * *
15602514 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTAGCCG
769 GGATCGACAGCACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * ** *
15602579 GTTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTCA
834 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
15602643 GCATATGGAATTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15602708 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTGGGGCACCATCGCTGGAGCATCGCCGGAGA
* ** *
15602773 ACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGG-TTGGGGGTGTACGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
15602837 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15602902 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15602967 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
15603031 CATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAG
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
15603096 TTTAAAAAATCCCGAACCGCAAAAAGTTTT-GAAAATCATGAAAAATAGAAAAGGAGTCGTCTTG
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * **
15603160 CCATGAAAATGCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAACAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15603225 TGGCATGCCGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* **
15603290 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCACGCCCGCTTGCTCGTTTCGTCTTTT
650 ATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGC-C-CCC-C--GCTCGTTTCGTCGGTT
* * *
15603355 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGG
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGG
* * * * * * *
15603420 ATC-AGTAGCA--CATAGAGAGACACCAGGCCGATCCCCGGCTTGCACATCCCGCCCCTCTAGCC
771 ATCGA-CAGCACGCAGAGGGGGAC-CCA-GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
15603482 GGTTGAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAA
833 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
15603547 GCATGTGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAACAAATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15603612 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGCCGAAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * * *
15603677 ACCTGACCGACGGCATTGGAGTTCTGACAATCAGGTGTGCCGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15603742 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15603807 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
15603872 GGGATACTTTTTTCAAATGGGCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15603937 GCATGCCCATAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
15604002 TTTTAAAAAATCCCGAACAGC-AAAAGGTTTCAAAATTTGTGGAAAATAGAAAACGAGTCGTCCT
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15604066 GCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
15604131 TTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCTACCCCCCTATCGATCCACAGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
**
15604196 CATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCG---CCCGCTCGTTTCGTCGGTTGGCTTAGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * * * *
15604258 CATGCAGAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGTTGCGACAACAGGATCGGCAA
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAG
** * * *
15604323 CACATAGAGGGGGACCC-GATCGATCCTCGACTTGCGCATCCCG-CCCTCCTAGCCGGCTGAGCG
779 CACGCAGAGGGGGACCCAGA-CGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCG
* *
15604386 CCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15604441 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15604506 CTTGGGCATGTGCTGGTGCCGCATTTTTCTT-C----G------C-C-GGAGCATCGTCGAAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCTGGAGCATCGCCGGAGAA
* * * * *
15604558 CCTGACCGGCGGCATTGAGGTTTCGACAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15604623 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15604688 CCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15604753 GGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
15604818 CATGCCAACAAAAACATAAGGATCACGTCTACCAAGTTTGGGG-CAAAACGGCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * *
15604882 TTTAAAAAATCCCAAACCGTAAAAAG-TTTCAAAAATCATGATACATAGAAAATGAGTCGTCTTG
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15604946 CCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15605011 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCAC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15605076 ATCCCGTCTCTCTAGCTGACGTAGTGCCCGATCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTG-CC---CGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
15605141 TAGGCGTATGGAGTTCATTCCCATTCTAAGATCGGA-CTGAACTGAGGGTTGTGGTAGTAGGATC
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGTGGCAGCAGGATC
* * *
15605205 GGCAGCACGTAGAGGGGGATCTAACTGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTTG
774 GACAGCACGCAGA-GGGG--------GA-CCCAGA----CG-AT-----CCC-C--G---GCTTG
* * * * *
15605270 CACATCCCGCCCCTCAGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAT
813 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
15605335 GTAGTTCGTTCCCAGTCTAA
878 GGAGTTCATTCCCAGTCTAA
* * * * * *
15605355 GCATACGGAGTTCATTCCCAGTCTCAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15605420 CTCGGGCATGTGCTGGTGCCACATTTTTCATCGTTGGGGCACCAT--C----G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * *
15605474 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCACAAATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
15605539 GATGGGTGCTGATACTTGGGCCTTATATTGTCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15605604 CCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15605669 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15605734 GCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
15605799 TTTTAAAAAATCCCGAACCACAAAAAGTTTT-GAAAATCTTGAAAAGTACAAAACGAGTCATCTT
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15605863 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATTGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
15605928 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATC-ATCCATGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * ** * *
15605992 CATCCTGTTTCTCTGGCCGGTGTAGTGCCCG--C-CCACCCATTTGTTTCATCGGTTGGCTTAGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
15606054 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGAAGCAGGATTGACAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * *
15606119 CACGAAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
779 CACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
15606184 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
844 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15606238 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** ** * * *
15606303 CTCGGGCATGTGCTGCTGTCGTATTTTTATTTGTCGGGGCACCATAACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCTGGAGCATCGCCGGAGA
* *
15606368 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCGAGGGGGGTGTGCACACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCC--GGGGGGTGTGCGCACATGATGT
** ** * *
15606433 GTTATGGGTGCTATTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15606498 CACCCCCATAAAGAGCGTTGGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15606563 TGGGGACACATTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15606627 ATGAATGCCAACAAAAATACAAGGATCACGACTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15606692 AATTTTAAAAAATCCCGAACCACAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
15606756 TTGCGACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTGCAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
15606821 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *** ** * *
15606886 CGCATCCCGTCTATCTATTCGGTGTAGTGCCCGCATGCCCGCCTACCCGGTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-C--GCCCGCC-CCCCGCTCGTTTCGTCGGTTG
* * * *
15606951 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAGGACCTGACCGAGGGTTGTGGCAGCAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGA
* * * ** *
15607016 T----TG---G--TAGGGGGACCCAG-CTGATCCCAGGCTTATGCATCCCGCCCCTCTGGCCGAC
772 TCGACAGCACGCAGAGGGGGACCCAGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15607071 TGAGTGGCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15607133 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15607198 CTCGGACATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC-ATCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCT-GGAGCATCGCCGGAG
* * * * *
15607262 AACCTGACCGTCGGCATCGGGGTTCCAATGATCGGGGTGGCCGAGGGGGGGTGTGCACACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCC---GGGGGGTGTGCGCACATGAT
*
15607327 GTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15607392 CACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15607457 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15607522 TTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * * *
15607587 AAAATTTAAAAAAATCCCGAACCACAAAAAGTTTT-GAAAATCTTGAAAAGTACAAAACGAGTCA
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15607651 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
15607716 TGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
15607781 TGCGCATCTCGTCTCTCTGG-CTAGCGTTGTGCCCACCCG---CCCACTCATTTTGTCTGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15607842 TTAGGCGTACGGAGTTCACTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATC
* * * *
15607907 GGCAGCACACAGAGTGGGACCCAGTCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGA
774 GACAGCACGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
15607971 GCGTCCGCACGCTCGTTTCGTGGGTTTACTTTGGCATACGGAGTTCATTCTCAGTCTAA
839 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15608030 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15608095 C-CTGGGCATGTGCTGGTGTCGCATTTTTCTTCCCCGGGGCACCATCGCTGGAGCATCACCGGAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTT-CCTGGGGCACCATCGCTGGAGCATCGCCGGAG
* **
15608159 AACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTACACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * **
15608224 TGATCGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCATCCCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15608289 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15608354 GGGGACACTTTCTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15608419 TGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15608484 ATTTTAAAAAATCCCGAAACGTAAAACG-TTTCAAAAATCATGAAAAATAGAAAACGA---G---
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
15608542 T--CAT----C-T----T-----C--------CC-----ATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
15608578 ATTGGCACACAGAAATAAGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
15608643 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCCCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
15608708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGGGGCAGCAGTATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGTGGCAGCAGGATCGA
* * *
15608772 CAGCACACAGA-GGGGACCC-GACCGATCCCCGGGTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
776 CAGCACGCAGAGGGGGACCCAGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15608835 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15608893 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
15608958 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCT-GGGGCACCATCGCTGGAGCATCGCCGGAGA
** * * *
15609023 ACCTGATTGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * * ** *
15609088 GATGCATGGTGGTATTTCACCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15609153 CCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15609218 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * * * **
15609283 GTGTGCCAACAAAAATACAAGGATCACGTTTATCATGTCTGGGGTGAAAACTCCTTCC-AAAAAT
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-
* * * * * **
15609347 ATTCTAAAAAATCTCAAACCGTAAAAAGTTTT-AAAAATTGTGAAAAATAGAAAACCTGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15609411 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACGAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15609476 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15609541 GCATCCCGTCTCTCTAGCCGACGCAGTGTCCGCCCGCCC
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
15609580 GCCCACCCAC
Statistics
Matches: 10691, Mismatches: 1309, Indels: 588
0.85 0.10 0.05
Matches are distributed among these distances:
859 116 0.01
860 2 0.00
861 1 0.00
862 36 0.00
863 592 0.06
864 6 0.00
866 1 0.00
869 1 0.00
871 3 0.00
872 3 0.00
873 2 0.00
874 13 0.00
875 521 0.05
876 147 0.01
877 73 0.01
879 210 0.02
880 295 0.03
881 4 0.00
882 4 0.00
883 182 0.02
884 2 0.00
885 3 0.00
886 8 0.00
887 189 0.02
888 173 0.02
889 81 0.01
890 419 0.04
891 526 0.05
892 47 0.00
893 115 0.01
894 642 0.06
895 695 0.07
896 864 0.08
897 1202 0.11
898 214 0.02
899 150 0.01
900 330 0.03
901 429 0.04
902 142 0.01
903 116 0.01
904 681 0.06
905 232 0.02
906 210 0.02
907 251 0.02
908 5 0.00
909 81 0.01
910 5 0.00
911 1 0.00
913 38 0.00
914 130 0.01
916 3 0.00
917 314 0.03
918 174 0.02
919 3 0.00
920 2 0.00
922 1 0.00
925 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGGCACCATCGCTGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Done.