Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33276047
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 139000 characters in sequence are not A, C, G, or T
File 99 of 190
Found at i:15602665 original size:26 final size:26
Alignment explanation
Indices: 15602617--15602666 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15602607 GTTGACTTAG
* **
15602617 GCATACGGAGTTCATTCTTAGTCTCA
1 GCATACGGAATTCATTCCCAGTCTCA
*
15602643 GCATATGGAATTCATTCCCAGTCT
1 GCATACGGAATTCATTCCCAGTCT
15602667 AAGATCGGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTCA
Found at i:15604444 original size:26 final size:26
Alignment explanation
Indices: 15604415--15604467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15604405 GTTGACTTAG
15604415 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15604441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15604467 G
1 G
15604468 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15605276 original size:26 final size:26
Alignment explanation
Indices: 15605240--15605289 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15605230 TGATCCCCGA
* *
15605240 CTTGCGCATCCCACCCCTCTGGCCAG
1 CTTGCACATCCCACCCCTCAGGCCAG
*
15605266 CTTGCACATCCCGCCCCTCAGGCC
1 CTTGCACATCCCACCCCTCAGGCC
15605290 GGCTGAGCGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.12, C:0.52, G:0.18, T:0.18
Consensus pattern (26 bp):
CTTGCACATCCCACCCCTCAGGCCAG
Found at i:15606249 original size:26 final size:26
Alignment explanation
Indices: 15606212--15606264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15606202 GTTGACTTAG
15606212 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15606238 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
15606264 G
1 G
15606265 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15607137 original size:26 final size:26
Alignment explanation
Indices: 15607107--15607159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607097 GTTGACTTAG
15607107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15607133 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15607159 G
1 G
15607160 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15608040 original size:26 final size:26
Alignment explanation
Indices: 15608004--15608056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607994 GTTTACTTTG
*
15608004 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15608030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15608056 G
1 G
15608057 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15608906 original size:26 final size:26
Alignment explanation
Indices: 15608870--15608919 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15608860 GACTTAGGCT
15608870 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
15608896 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15608920 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15610970 original size:26 final size:26
Alignment explanation
Indices: 15610934--15610986 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15610924 CCGGTTTGAT
* *
15610934 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15610960 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15610986 C
1 C
15610987 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15612759 original size:26 final size:26
Alignment explanation
Indices: 15612730--15612782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15612720 CCAGTCCGAT
* *
15612730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
15612756 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
15612782 C
1 C
15612783 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15613144 original size:900 final size:892
Alignment explanation
Indices: 15610514--15613636 Score: 4195
Period size: 900 Copynumber: 3.5 Consensus size: 892
15610504 TACGCATCCC
*
15610514 AAGGAGTTTTGGCCCCAAACTTGGTA-ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
1 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
15610578 TTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
66 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
15610643 CACTTTAATGGCT-CTTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
131 CACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
15610707 CTCGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
195 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
** * ** * * * *
15610772 TGTGCGCACACCCACCCCGACCCAACCGATTGTCGGAAAGCCGATCCCGTCGGTTAGGTTCTCCG
260 TGTGCGCACACCC-CCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * * *
15610837 GTGATGCTCTGCCGATGGTGCCTC-AGCGAAGAAAAATGTGGCACCAGCACATGCTCGAGGCCAG
324 GTGATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * ** * *
15610901 CATGTGCTGTCGCGACCCTCGGTCCGGTTTGATCTTAGACTGGGATTGAACTCTGTATGCTTAGA
388 CATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * **
15610966 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGG--CA-C--TCAGTC
453 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCAGCGGCCAGAG
* * * *
15611026 GGGCGGGATGCGCAAGCCGAGGATCAGTCT-GGTCCCCTTCTGCGTGCTGTCGATCCTGCTGCTA
518 GGGCGGGATGCGCAAGCCGGGGATC-GACTGGGTCCCC-TCTGCGTGCTGCCGATCCTGCT-CCA
* * * * * *
15611090 CAACCCTTGGTCCAGTCCGATCTTAGATTGAGAATGAACTCCGTGTGCCTAAGCCAATCGATGAA
580 CAACCCTCGGTCCA-----ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
15611155 ACGAGC--GTG-CGGGCGGCGGGCACTACGGCGGCCAGAAAGACAGGATACACAAGCCATGGATC
640 ACGAGCGGGGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
**
15611217 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
705 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
*
15611282 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTT
770 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * ** ** * *
15611347 CTATTTTTCACGATATTCAAAACTTTCTGCT-GTTCAGAATTTTTTAAAATTTTTTCGG
835 CTATTTTTCATGATTTTTGAAACTTT-TTATGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
15611405 AAGG-TTTTTGGCCCCAATCTTGGTAGACATGATCCTTGAATTTTTGTTGGCATGCACAAAAAAA
1 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
15611469 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTAAAA
66 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
** *
15611534 CACTTTAATGGCTGTTGGCAGCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
15611599 TCGAGGTTCGATGAGGGATTGGGTGCCAATATAA-GGCCAAGTACCAGCACCCATCACACATCAT
196 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
** * *
15611663 GTGCGCACACCCCCCCG-GGCCCCCGATCGTCGAAACCCCAATGCCGCCGGACAGGTTCTCCGGT
261 GTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
* * *
15611727 GATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCAT
326 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
15611792 GTGTTGCTGCAACCCTCAGTCCAATCCGGTCTTAGACTTGGAATGAACTCCCG-AT-CTTAGACT
391 GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCTTAGACT
* * *
15611855 GGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCATGCGGGTGCTCAGTCGGCTAGA
455 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GCTCAG-CGGCCAGA
* * * * * * * *
15611920 GGGGTGGGATGCGTAAGTCGGGAATCGACCGGGTCCCCCTCTGCTTGCTACCGATCCTACTGCCA
517 GGGGCGGGATGCGCAAGCCGGGGATCGACTGGGT-CCCCTCTGCGTGCTGCCGATCCTGCT-CCA
* * * * *
15611985 TAACCCTCGGTCTGGTCTAACCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCAACGAA
580 CAACCCTCGGTC----C-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
15612050 ACGAGCGGGAGGGAGGGCGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCT
640 ACGAGC-GG-GGGA---CGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
* *
15612115 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACATGCCAATGCCATTTT
699 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
15612180 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
764 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
15612245 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGG
829 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
** * * * *
15612309 AAGGATTTTTGGCCCCAAACTTGGTAGAGGTGATCCCTGTATTTTTTTTGGCATGCATAAAAATA
1 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
15612374 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTCAG
66 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAG
** * *
15612439 AGGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTAAGGTGGTGTGAGTT
130 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
15612504 CTCAAGGTTTGATGAGGAATAGGGGGCCAATATAAGTGCCAAGTACCACCACCCATCACATATCA
195 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
15612569 TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
260 TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
15612634 CGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
325 TGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
15612699 AGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
390 TGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
15612764 GGGAAAGAACTCCATATGCCTAAGTCAATCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGA
455 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-G-GCTCAG-CGGCCAGA
* *
15612829 GGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCTCCCTCTGCGTGCTGCCGATCCTGCTATCA
517 GGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTC-CCCTCTGCGTGCTGCCGATCCTGCT-CCA
* *
15612894 CAACCCTCGGTCCAATCTTAGACTGGGACTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAG
580 CAACCCTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* *
15612959 CGGGCGGACGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
645 CGGG-GGACGGGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGAT
* *
15613024 AGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTTATGGCTTG
708 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
15613089 TAAATTCATACAACGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
773 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
15613154 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
838 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
* **
15613209 AAGGAGTTTTT-GCCCCAAACTTGGTAGACACGATCCTTGTATTTTTGTTCACATGCACAAAAAA
1 AAGGA-TTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
15613273 ACTCAACCAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTATCCCCATTTCAG
65 ATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15613338 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTT
130 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15613403 CTGGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
195 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* *
15613468 TGTGCGCACA-CCCCCC-AGCCCCCCGATCGTCGGAACCCCAATGCCG-C---C-GG-T-T-AGG
260 TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
** *
15613523 T--T-CTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCA
325 TGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
15613585 TGTGCTGCCGTAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCC
390 TGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
15613637 ATATTTCTAA
Statistics
Matches: 1965, Mismatches: 228, Indels: 83
0.86 0.10 0.04
Matches are distributed among these distances:
886 104 0.05
887 51 0.03
888 132 0.07
889 11 0.01
890 62 0.03
891 195 0.10
892 2 0.00
893 2 0.00
894 2 0.00
895 99 0.05
896 5 0.00
897 29 0.01
898 6 0.00
899 137 0.07
900 330 0.17
901 5 0.00
902 1 0.00
903 12 0.01
904 262 0.13
905 107 0.05
906 92 0.05
907 47 0.02
908 147 0.07
909 125 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCAGCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCTCTGCGTGCTGCCGATCCTGCTCCACAACCC
TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGG
ACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
Found at i:15614364 original size:26 final size:26
Alignment explanation
Indices: 15614328--15614380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15614318 CCGGTCCGAT
15614328 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15614354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15614380 C
1 C
15614381 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15615248 original size:26 final size:26
Alignment explanation
Indices: 15615219--15615282 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
15615209 CTAGTCTGAC
* *
15615219 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15615245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15615271 CTTAGACTGGGA
1 CTTAGACTGGGA
15615283 TGCACAAGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15615921 original size:689 final size:689
Alignment explanation
Indices: 15614592--15615960 Score: 2010
Period size: 689 Copynumber: 2.0 Consensus size: 689
15614582 AGAGAGACGA
* * * *** **
15614592 GATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGTTGCATCTTCATATTTCTGTGTG
1 GATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
15614657 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTCTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTCTCA
** * * *
15614722 TGCCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCAGTTTGGGATTTTTTA
131 TGCCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTCTGCAGTTCGAGATTTTTTA
**
15614787 AAATTTTTCGGAAGGAGCCTGGGCCCCAAACTTGGTAGATGTGACCCTTGTATTTTTTTTGGCAT
196 AAATTTTTCGGAAGGAGCCTGGGCCCCAAACTTGGTAGACATGACCCTTGTATTTTTTTTGGCAT
15614852 GCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
261 GCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
15614917 CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
326 CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15614982 GGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
391 GGGTGTGAGTTCTGAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
15615047 ATCACACATCATGTGCACACACCCCCTCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTC
456 ATCACACATCATGTGCACACACCCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTC
* * *
15615112 AGGTTCTCCAATGATGCTCCGGTGATGGTGCCCCAACAAAGAAAAATGCGGCACCAACACATGCC
521 AGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCAACAAAGAAAAATGCGACACCAACACATGCC
* * * * * *
15615177 CGAGCCCAACGTGTGCTGCCGCAACCCTTGGTCTAGTCTGACCTTAGATTGGGAATGAAC-TCTG
586 CGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACTTC-A
15615241 TATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
650 TATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
15615281 GATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
1 GATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * *
15615346 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTGA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTCTCA
* * *
15615411 TGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGC-GATTCGAGATTTTTT
131 TGCCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTCTGCAG-TTCGAGATTTTTT
* **** * *
15615475 CAAATTTTTTCGGAAGGTTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGC
195 -AAAATTTTTCGGAAGGAGCCTGGGCCCCAAACTTGGTAGACATGACCCTTGTATTTTTTTTGGC
*
15615540 ATGCA-AAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
259 ATGCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
15615604 GT-CCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAA
324 GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
15615668 GGGGGTGTGAGTTCTTAAGGTTTGATGAAGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCAT
389 GGGGGTGTGAGTTCTGAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
15615733 CCATCGCACATCATGTGCGCACAACCCCCCCGACCCCCCCGATGGCCGGAACCCCAATGCCGTCG
454 CCATCACACATCATGTGCACAC-ACCCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGTCG
* * *** * * * * * *
15615798 GTTAGGTTTTTTGACGGTGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACAT
518 GTCAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCAACAAAGAAAAATGCGACACCAACACAT
*** * * * *
15615863 GCCCGAGGTTAGCATGTGCTG-CGACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGTACT
583 GCCCGAGCCCAACATGTGCTGCCG-CAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACT
15615927 TCATATGCTTAGACTGGGAATGAACTCCGTATGC
647 TCATATGCTTAGACTGGGAATGAACTCCGTATGC
15615961 CTAAGTCAAC
Statistics
Matches: 603, Mismatches: 72, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
688 142 0.24
689 399 0.66
690 62 0.10
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (689 bp):
GATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTCTCA
TGCCAAGACAACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTCTGCAGTTCGAGATTTTTTA
AAATTTTTCGGAAGGAGCCTGGGCCCCAAACTTGGTAGACATGACCCTTGTATTTTTTTTGGCAT
GCATAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTGAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCACACATCATGTGCACACACCCCCCCGACCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTC
AGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCAACAAAGAAAAATGCGACACCAACACATGCC
CGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACTTCAT
ATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:15615959 original size:26 final size:26
Alignment explanation
Indices: 15615908--15615960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15615898 CCGGTCCGAT
* *
15615908 CTTAGACTGGGAATGTACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15615934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15615960 C
1 C
15615961 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15616847 original size:26 final size:26
Alignment explanation
Indices: 15616811--15616863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15616801 CCAGTCTAAT
*
15616811 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15616837 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15616863 C
1 C
15616864 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15617649 original size:916 final size:903
Alignment explanation
Indices: 15615274--15618556 Score: 4286
Period size: 903 Copynumber: 3.7 Consensus size: 903
15615264 CCGTATGCTT
* *
15615274 AGACTGGGATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTT
1 AGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
15615339 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGA
65 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * * * *
15615404 AGTTTGATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGATTCGAGA
130 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA
* ** * *
15615469 TTTTTTCAAATTTTTTCGGAAGGTTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
195 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTT
* * *
15615534 TTTGGCATGCAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
260 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
15615599 AAAGTGT-CCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTC
325 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * *
15615663 TTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAAGGATTGGGGGCCAATATAAGGGCCAAGTACC
390 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
15615728 AGCATCCATCGCACATCATGTGCGCACAACCCCCCCGACCCCCCCGATGGCCGGAACCCCAATGC
455 AGCACCCATCGCACATCATGTGCGCAC-ACCCCTCCG-GCCCCCCGATCGTCGGAACCCCAATGC
* * * ** * * * * *
15615793 CGTCGGTTAGGTTTTTTGACGGTGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGTGACACCAG
518 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
*** * *
15615858 CACATGCCCGAGGTTAGCATGTGCTGCGACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
583 CACATGCCCGAGCCCAGCATGTGCTCCG-CAACCCTCGGTCCAGT-C-ATCTTAGACTGGGAATG
*
15615923 TACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGC
645 -AC-TC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * *
15615988 GGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGT
707 GGGCGCTCAGTCGTCCAGAGGGGCGGGATGTGCAGGCCAGGGATCGATCGGGTCCCCCTCTGCGT
* * *
15616053 GCTACCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
772 GCTACCAATCCTGCTGCCGCAA-CCTTCGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * *
15616118 -CTTAAGCCAATCGATGAAACGAGTGGGC-G-GAC-----GG-A--CGGGCGAGCACTACGCTGG
836 GCCTAAGCCAA-CGA-GAAAAGAGTGGGCGGTGGCGGGTGGGCAGGCGGGCGAGCACTACGC-GG
15616172 CCAGA-
898 CCAGAG
* * * *
15616177 ATGACGGGATGCGCAAGCCATGGATCGATAGGGTAGTAGGTGGGTTTAGGCATATGTTCATATTT
1 A-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
15616242 CCACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCTTTTAAGCCTTCACGTG
65 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTG
* *
15616307 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCG-G
129 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAG
* *
15616371 ATTTTTTATAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTA-TTT
194 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTT
* * * *
15616435 TTTTGGCCTGCGCAAAAAAATTCAGCTAAAACCTCAAAGTGTACAAGATTTTGTGACCATTCGAA
259 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
*
15616500 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCT
324 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
** * * *
15616565 CTTTAAGGAAGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCTAAGTAC
389 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
15616630 CAGCACCCATCGCACATCATGTGCGCACACCCCCCTTCGGCTCCCCGATTGTCGGAACCCCAATA
454 CAGCACCCATCGCACATCATGTGCGCACA--CCCCTCCGGCCCCCCGATCGTCGGAACCCCAATG
* * * * ** * **
15616695 TCGCCGGTCAGGTTCTCCGGCGATGCTTCGATGATGGTGCCCCGGTGAAGAAAAATACGGCACGG
517 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
*
15616760 GGACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTAATCTTAGACTGGGAAT
582 GCACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTCGGTCCAGTC--ATCTTAGACTGGGAAT
* * *
15616825 GAACTCCTTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTA
644 G-ACT-C-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
15616890 CGGGCGCTCTGTCGTCCAGAGGGGCGGGATGTGCAGGCCAGGGATCGATCGGGTCCCCCTCTACG
706 CGGGCGCTCAGTCGTCCAGAGGGGCGGGATGTGCAGGCCAGGGATCGATCGGGTCCCCCTCTGCG
* * * * *
15616955 TGCTACCAATCCTGCTACTGTAACCTTCAGTCTGGTTCAATCTTAGACTGGGAATGGACTCCGTA
771 TGCTACCAATCCTGCTGCCGCAACCTTC-GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTA
*
15617020 TGCCTAAGCCAACCGAGGAAAAGAGTGGGCGTGTGGGCGGGTGGGCAGGCGGGCGGGCACTACGT
835 TGCCTAAGCCAA-CGA-GAAAAGAGTGGGCG-GT-GGCGGGTGGGCAGGCGGGCGAGCACTACG-
15617085 CGGCCAGAG
895 CGGCCAGAG
*
15617094 AGACGGGATGCGCAAGTCC-TGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTT
1 AGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
15617158 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGA
65 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
15617223 AGTTTCATGGCAAGACGACTCATTTTCAATTTCTCACGATTTTCAAAACTTTTTACGGTTCAAGA
130 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA
* * * *
15617288 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTAGCAAACATGATCCTTGTATTTTC
195 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTT
* *
15617353 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
260 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
*
15617418 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
325 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
** * *
15617483 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAATGGCCAAGTACC
390 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
15617548 AGCACCCATCGCACATCATGCGCGCACACCCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGTC
455 AGCACCCATCGCACATCATGTGCGCACACCC-CTCCGGCCCCCCGATCGTCGGAACCCCAATGCC
* *
15617613 GCCGGTCAGGTTCTCCGACGATTCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGC
519 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
15617678 ACATGCTCGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-CAG---TC-----C---G-AT---T
584 ACATGCCCGAGCCCAGCATGTGCT-CCGCAACCCTCGGTCCAGTCATCTTAGACTGGGAATGACT
* * * *
15617723 CGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGGAGCGTGCGGGCGT
648 CTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* *
15617787 TCAG-C-TGCCAGAGGGGC-GGATGTGC-GAGCCAGGGATC-AGCCGGGTCCCCCTCTGCATGCT
713 TCAGTCGT-CCAGAGGGGCGGGATGTGCAG-GCCAGGGATCGA-TCGGGTCCCCCTCTGCGTGCT
* * * * ** *
15617847 GCCCATCCTGCTGCCACAACCCTCGATCTAATCCAATCTTAGACCGGGAATGAACTCCGTATGCC
775 ACCAATCCTGCTGCCGCAACCTTCG-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
15617912 TAAGCCAACTA-ACAAA-A-T--G-AGT---GGGTGGGCGGGCGGGCGAGCACTACGCCGGCCAG
839 TAAGCCAACGAGA-AAAGAGTGGGCGGTGGCGGGTGGGCAGGCGGGCGAGCACTACG-CGGCCAG
15617968 AG
902 AG
* *
15617970 AGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTA
1 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
15618035 TGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAA
66 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * ** * * *
15618100 GTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACAGTTTGGGAT
131 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGA-
* * *
15618165 TTTTTTAAAACTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
195 TTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTT
*
15618229 TTTTGGCATGCACAAAAAAATTCAGCCT-AAAACTCAAAGTGTACAAGATTTTCTGACCATTTGA
259 TTTTGGCATGCACAAAAAAATTCAG-CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
*
15618293 AAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
323 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
15618358 TCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
388 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
15618423 CCAGCACCCATCGCAGATCATGTGCG--CACCCC-CCGGCCCTCCCGATCGTTGGAATCCCAATG
453 CCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCC-CCCGATCGTCGGAACCCCAATG
* *
15618485 CCGCCGGTTAGGTTCT-CTAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
517 CCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
15618549 AGCACATG
581 AGCACATG
15618557 ATCCTTGTAT
Statistics
Matches: 2111, Mismatches: 230, Indels: 107
0.86 0.09 0.04
Matches are distributed among these distances:
873 9 0.00
874 85 0.04
875 7 0.00
876 205 0.10
877 257 0.12
878 8 0.00
880 2 0.00
882 1 0.00
884 1 0.00
885 2 0.00
886 3 0.00
887 5 0.00
888 96 0.05
889 11 0.01
890 57 0.03
891 2 0.00
892 1 0.00
893 1 0.00
897 2 0.00
898 1 0.00
901 1 0.00
902 76 0.04
903 582 0.28
904 105 0.05
906 3 0.00
908 2 0.00
911 3 0.00
912 1 0.00
913 2 0.00
914 2 0.00
915 77 0.04
916 289 0.14
917 212 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTTT
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTCCGCAACCCTCGGTCCAGTCATCTTAGACTGGGAATGACTCTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GTCGTCCAGAGGGGCGGGATGTGCAGGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCAAT
CCTGCTGCCGCAACCTTCGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACGAGAAAAGAGTGGGCGGTGGCGGGTGGGCAGGCGGGCGAGCACTACGCGGCCAGAG
Found at i:15620762 original size:26 final size:26
Alignment explanation
Indices: 15620733--15620785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15620723 CCGGTCCGAT
*
15620733 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15620759 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15620785 C
1 C
15620786 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15621400 original size:890 final size:884
Alignment explanation
Indices: 15618555--15622611 Score: 4902
Period size: 891 Copynumber: 4.6 Consensus size: 884
15618545 CACCAGCACA
*
15618555 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* * *
15618620 TTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTGGCAGCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
15618685 AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
15618750 ATGAGGGCCAAGTACCCGTACCCATCGA-ACATCATGGGCGCACACCCCCCCAGGCCCCCTGATC
196 ATAAGGGCCAAGTACCAGCACCCATC-ACACATCATGTGCGCACA-CCCCCC-GGCCCCCCGATC
* ** * *
15618814 GTCGAAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCTCGATGAAG
258 GTCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * *
15618879 AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTAGTTCCTGTCC-A
322 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC---TTCC--TCCGA
* *
15618943 TTCTTAGACTGGGAATTAACTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
382 -TCTTAGA-TGGGAATGAACTCC-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
15619008 CGACGAAACGAGTGGGCCAGAGGGGTG-GGATGCGCTCAG-TCGGCCAGAGGGGTGGGATGCGCA
444 CCATGAAACGA----G-C------GTGCGG--GCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCA
* * * * ** *
15619071 AGCCGGGATCAGTCGAGTCCCCCTCTGCGTGCTACTGATCCTGCTACCACAACCCTTGGTCTAGT
495 AGCCGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGT
* * ** * * *
15619136 ATAATCTTAGTTTTGGAATGAACTCCATATGCCTAAGCCAACCGAAGAAACGAGTGGGCGGGCGG
560 CTGATCTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------GGAC-G
*
15619201 GCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
617 G-AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
15619266 TGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGATTGTAAATTCAAAC
681 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
15619331 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGAAGACTCATTTTTCTATTTTTCACGA
746 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGA
* * * * * * *
15619396 -TTTTCAAAATTTTTGCTGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAAG
810 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAAC
*
15619460 TTAGTAGACG
875 TTGGTAGACG
* * * * * * *
15619470 TGATCCTTGTATTTTTTTTGCCATGCATAAAAAAATTCAGCAAAAAAATCGAAGTGTACAAGGTT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* * *
15619535 TTGTAACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
15619600 AAAATCTCAAATGGTCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * **
15619665 ATGAGGGCCAAGTACCTGCACCCATCATACATCATGTGTGCACACCCCCCAACCCCCCGATCGTC
196 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* ** *
15619730 GGAACCCCAAATGTCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAA
261 -GAACCCC-AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* ** *
15619795 AAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTTTCACAACCC-T--T--G-T-TT---
324 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCCTCCGATCTTAGA
15619850 T--G---G---TCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
389 TGGGAATGAACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * * * *
15619906 AGCGTACGGGCGCTCAGCCGACCAGAGGGGCGAGATGCACAAGTCGGGGATCGGTCGGGTCCCCC
454 AGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCAGTCGGGTCCCCC
*
15619971 GT-TGCGTGCTGCCGATCCTGCTA-CTGCAACACTCAGTCTGGTCTGATCTTAGACTGGGAATGA
518 -TCTGCGTGCTGCCGATCCTGCTACCT-CAACCCTCAGTCTGGTCTGATCTTAGACT-GGAATGA
*
15620034 ACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGTAGGCAGGCAGGCACTACGTCGGC
580 ACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGAC-GG-AGGC--G--GGCACTACGTCGGC
* * * *
15620099 CAGAGAGACGGGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACTTCTTCAT
637 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*** *
15620164 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
702 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
15620229 GTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCACGATTTTTGAAACTCTTTACGGTTC
767 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
* * *
15620293 GGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCATCAAACTTGGTAAACG
832 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACG
*
15620346 TGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTTGAAA-TGTACAAGAT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCAAAGTGTACAAGAT
*
15620409 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTG
65 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15620474 TAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGATGTTTGATGAGGGATAGGGGGCCAA
130 TAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
15620539 TATAAGGGCTAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCAT
195 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* * ** *
15620604 CAGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTACGTCAACGAAGAA
260 C-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
15620669 AAATGCGGCACCAACAAATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
324 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-T--TCC--TCCGATC
* *
15620734 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCA
384 TTAGA-TGGGAATGAACTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * **
15620799 TGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAAGGGCGGGATGCGCAAGCTAGGGATCAACCGG
447 TGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGC-CGGGATCAGTCGG
* * ** * *
15620864 GTCCCCCTCTGCCTGCTGTCGATCCTGCTGTCTTAACCCTCAGTCTGGTCCGATCTTAGACTGGA
511 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCTGATCTTAGACTGG-
15620929 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-G-C-G-GGCGGGCACTACG-CTGGCCA
575 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGACGGAGGCGGGCACTACGTC-GGCCA
* * * * *
15620989 CAGAGACAGGAAGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATAT
639 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
15621054 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
704 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
15621119 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTGTGGTTCGG
769 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGG
* *
15621184 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
834 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACG
* *
15621235 TGACCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCGGCTAAAAACTCAAAGTGTACAAGATT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
*
15621300 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * ***
15621365 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGAAAAAT
131 AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * *
15621430 ATAAGGGCCAACAACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTC
196 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* * * * *
15621495 GGAACCCCAATGCTGTCGGTCAAGTTCTCCGGCGATGCTTTGGTGATGCTTCGGCGATGGCGCCC
261 -GAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA--C------GATGCTCCGACGATGGTGCCC
* * * *
15621560 CGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGTATGTGCTGCTGTAA------C-C
314 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCCTC
*
15621618 C--TC--AG-T----A-CAA-TCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
379 CGATCTTAGATGGGAATGAACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * * *
15621671 CCATGAAACGAACGTGCGGGAGCTCAAATGGCCAGAAGGGCGGGATGCGCAAGCCGAAGATCGGT
444 CCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCAGT
* * * *
15621736 CGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGT-AACCCTCGGTCCGGTCTGATCTTAGAC
508 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC-TCAACCCTCAGTCTGGTCTGATCTTAGAC
* *
15621800 TAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAGCGAGCGAGCGGGCGGGCGATCGGGCGG
572 T-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAA---A-CGA--GGAC--G-GA---GGCGG
* *
15621865 GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
624 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
15621930 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
689 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * *
15621995 CTTAAGCCTTCACGTGAAGTTTCATGGAAAGATGACTCATTTTTTATTTTTCATGATTTTTGAAA
754 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
15622060 TTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCACCAAACTTGGTAGAT
819 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGAC
15622125 G
884 G
* * ** * *
15622126 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACACCTAGTCTACAATATT
1 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
*
15622191 TTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
66 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
15622256 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAAT
131 AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *
15622321 ATAAAGGCCAAGTACCAGCACCCATGGCACATCATGTGCACACACCCCCCTGGCCCCCCCGATCG
196 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GG-CCCCCCGATCG
*
15622386 TCGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---G----G-CGA---TGCTCCGACGAAGAA
259 TCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
15622437 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCGATTCGATC
324 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---TCC--TCCGATC
* ** *
15622502 ATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTATGTATGCCTAGGTCAACCCA
384 TTAGA-TGGGAATGAACTCCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* **
15622567 CGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGC
447 TGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
15622612 AACCCTCGGT
Statistics
Matches: 2739, Mismatches: 294, Indels: 240
0.84 0.09 0.07
Matches are distributed among these distances:
867 53 0.02
870 3 0.00
871 1 0.00
873 12 0.00
874 90 0.03
875 407 0.15
876 125 0.05
877 254 0.09
878 7 0.00
879 5 0.00
881 2 0.00
882 2 0.00
883 5 0.00
884 3 0.00
885 4 0.00
886 2 0.00
887 4 0.00
888 202 0.07
889 117 0.04
890 242 0.09
891 471 0.17
892 35 0.01
893 90 0.03
894 1 0.00
895 2 0.00
896 2 0.00
897 1 0.00
898 5 0.00
899 6 0.00
900 177 0.06
901 66 0.02
902 2 0.00
903 1 0.00
906 1 0.00
910 1 0.00
913 18 0.01
914 97 0.04
915 223 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (884 bp):
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTCCTCCGATCTTAGATG
GGAATGAACTCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCAGTCGGGTCCCCCTCT
GCGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCTGATCTTAGACTGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGGACGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGACG
Found at i:15622551 original size:26 final size:26
Alignment explanation
Indices: 15622503--15622553 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15622493 GATTCGATCA
* *
15622503 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTACGTATGCT
*
15622529 TAGACTGGGAATGAACTATGTATGC
1 TAGACTGGGAATGAACTACGTATGC
15622554 CTAGGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTATGCT
Found at i:15623378 original size:26 final size:26
Alignment explanation
Indices: 15623349--15623401 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15623339 CCGGTCTGAT
15623349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15623375 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15623401 C
1 C
15623402 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15624832 original size:879 final size:882
Alignment explanation
Indices: 15622610--15624973 Score: 3345
Period size: 895 Copynumber: 2.7 Consensus size: 882
15622600 GGGGCGGGAT
* * * **
15622610 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GCAAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGA
* *
15622675 AACGAGCGGGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
66 AA-GAGC-GGCGGGCGGG-CGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
15622740 ATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
15622805 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
* *
15622870 TTTCTATTTTTCACCATTTTTGAAACTTTTTG-TGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
258 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCT-GTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * *
15622934 GAGTTTTGGCCCCAAACTTGGTAGACGTGACCCTTGTATTTTTGTTGGCATGCACACAAAAATTT
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
15622999 GGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15623064 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTAAGTTCTCG
15623129 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
516 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
15623194 CGA-ACACCCCCTGGCCCCCCCGATCGCCGGAACCCCAACGTCACCGGTCAGGTTCTCCGGCGAT
581 C-ACACACCCCCTGGCCACCCCGATCGCCGGAAACCCAACGTCACCGGTCAGGTTCTCCGGCGAT
*
15623258 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTG
645 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATACCCGAGCCCAGCATGTG
*
15623323 CTGCTGCAACCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
710 CTGCTGCAA-C-CA--CC-GTCAGATC----AC--GG-A-G-A-TCCGTATGCTTAGACTGGGAA
* *
15623388 TGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCTACTCAACGTGCCAGAGGGGC
760 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCTACTCAACGTGCCAGAGGGGC
* * **
15623453 GGGATGGGCAAGCCGGGATCGTTCGGGTCCCCTTCTGCGTGCTGCCGATCCAGCTACC
825 GGGATGGGCAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAAATCCAGCTACC
* * * * * *
15623511 GCAAGCCTCGATCCAGTCCGATCTTAGACTTGCAATGAACTTCGTATA--CCTAAG-CAA-CGAT
1 GCAAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TC-TATATGCCTAAGCCAACCGAC
* * * ** * * *
15623572 GAAACA-AGGCGAGCGGGCGTGCGGGCACTACACCGGCCAAAGAAACAGGATGCGCAAGCCGTGG
64 GAAAGAGCGGCGGGCGGGCG-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
15623636 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTATAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
15623700 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
* * * *
15623765 TTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTCGGAAAG
258 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
15623830 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
15623895 GCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
15623960 TCAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTAAGTTCTCGA
* *
15624025 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTAGCAGCACCCATCGCACATCATGTGC
517 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * **
15624090 ACACACCCCCTCCCCGGCCACCCCGATCGTC-GAAACCCAATG-CTGTCGGTCAGGTTCTCCGGC
582 ACACACCCCCT----GGCCACCCCGATCGCCGGAAACCCAACGTC-ACCGGTCAGGTTCTCCGGC
** * *
15624153 GATGCTCCGGTGATGGTGCCCCGGA-GAAGAAAAATGCGGCACCAACACATACCCGAGCCCATCA
642 GATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCAGCACCAACACATACCCGAGCCCAGCA
*
15624217 TGTGCTG-TCGTAA-C-CC-TCAG-TC-C-G-G-TCCG-AT-CTTAGACTGGGAATGAACTCCGT
706 TGTGCTGCT-GCAACCACCGTCAGATCACGGAGATCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
15624271 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-A-GTCGACTAGAGGGGTGGGATGTG
770 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCTACTCAACGT-G-CCAGAGGGGCGGGATGGG
* * **
15624334 CAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAAATCCTGCTGTC
833 CAAG-CCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCAAATCCAGCTACC
* *
15624385 GCAAGCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGA
1 GCAAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGA
15624450 AAGGAGCGGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 AA-GAGCGGCGGGCGGGCGG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
15624515 TCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
15624580 GCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACATGAAGTTTCATGGCAAGATGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
15624645 TTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGACGGT
259 TTCTATTTTTCACAATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
15624710 GTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
15624775 CTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTT
389 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
** *
15624840 TAATGGCTACTGGCAGCAAACCTACAAAATCTCAAATGCTCTTTAAGAAGGTGTAAGTTCTCGAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTAAGTTCTCGAG
* * *
15624905 GTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCATATCATGTGCA
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
15624970 CACA
583 CACA
15624974 TCGTACAATT
Statistics
Matches: 1311, Mismatches: 127, Indels: 72
0.87 0.08 0.05
Matches are distributed among these distances:
871 2 0.00
872 6 0.00
873 79 0.06
874 79 0.06
875 7 0.01
876 7 0.01
877 2 0.00
878 106 0.08
879 366 0.28
880 1 0.00
881 1 0.00
884 1 0.00
889 2 0.00
890 3 0.00
892 2 0.00
894 4 0.00
895 378 0.29
896 102 0.08
897 2 0.00
898 93 0.07
899 23 0.02
900 3 0.00
901 38 0.03
902 2 0.00
903 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (882 bp):
GCAAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGA
AAGAGCGGCGGGCGGGCGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACAATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTAAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC
ACCCCCTGGCCACCCCGATCGCCGGAAACCCAACGTCACCGGTCAGGTTCTCCGGCGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATACCCGAGCCCAGCATGTGCTGCTG
CAACCACCGTCAGATCACGGAGATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGCTACTCAACGTGCCAGAGGGGCGGGATGGGCAAGCCGGGATCG
GTCGGGTCCCCCTCTGCGTGCTGCAAATCCAGCTACC
Found at i:15625522 original size:26 final size:26
Alignment explanation
Indices: 15625486--15625538 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625476 GTTGACTTAG
15625486 GCATACAGAGTTCATT-CCCAGTCTAA
1 GCATACAGAGTTCATTCCCCA-TCTAA
*
15625512 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACAGAGTTCATTCCCCATCTAA
15625538 G
1 G
15625539 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCCATCTAA
Found at i:15626794 original size:902 final size:900
Alignment explanation
Indices: 15624976--15629523 Score: 6261
Period size: 902 Copynumber: 5.1 Consensus size: 900
15624966 TGCACACATC
* * * *
15624976 GTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCGACAAAAATACATGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * **
15625041 CCAAGTTTGGGGCCAAAACTACTTCTGAAAAAATTTTAAAAAATCTCGAACTACAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
**
15625106 AAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15625171 ATTGTATGAATTTACAAGCGATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
*
15625236 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTG-CCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * *
15625300 CGCCCACCCACCCGCTCGTTTCGTTAGTTGTCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
326 CGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * *
15625365 CGGACCAGACCAAGGGTTGTGGTATCTGGATCGGCAGCACGC---------CCCGGTCGATCCCC
391 CGGACCAGACCGAGGGTTGTGGTATCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * *
15625421 GGCTTGCGCATCCCACCCCTCTGG-TCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTA
456 GGCTTGCGCATCCCGCCCCTCTGGCT-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
15625485 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCCA-TCTAAGATCAGACCAG
520 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCGG
* * * * * *
15625549 ACCGATGGTTACGACAGCACATGCTGGGGTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTC--
584 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* *
15625612 GG----AT-----A--AT-GTCGGAGAACCTGACCGGCTGTATT-GGGTTCCGACGATCGGGGGG
649 GGCACCATCCCGGAGCATCGTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGG
** *
15625664 CCGGGGGGTGTATGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
713 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
15625729 CCCTCATCAAACCTCGAGAACTCACATCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
778 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15625794 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTT
843 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
15625852 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
15625917 CCAAGTTTGGGG-CTAAACTCCTTCGGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
15625981 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
15626046 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
15626111 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCACC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
15626176 CGCCTGCCCACCCGCTCGTTTTGTCAGTTGGCTTAGGCATATGGAGTTTATTCCTAGTCTAAGAT
326 CGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * *
15626241 CGGACCAGACCAAGGGTTGTGGTATCTGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
391 CGGACCAGACCGAGGGTTGTGGTATCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * *
15626306 GGCTTGCGCATCCCACCCCTCTGG-TCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTA
456 GGCTTGCGCATCCCGCCCCTCTGGCT-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * **
15626370 GGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCGTAGTCTAAGATCGGACCGGA
520 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * *
15626435 CCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTTGCCGGG
585 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
15626500 GCACCATCACCGGAGCATCGTTGGAGAACTTGACCAGCGGCATTTGGGTTCC-AGCGATCGAGGG
650 GCACCATC-CCGGAGCATCGTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGA-CGATCG-GGG
* **
15626564 GGCCGGGGGGTGTGCGCACATGATGTACGATTTGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
711 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
15626629 ATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCT
776 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15626694 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCATAAAATCTT
841 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15626754 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACTTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * ** * *
15626819 CCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAAATTT-AAGAATCCTAAATCGCAAAGAGTTTCA
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
15626883 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
15626948 ATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCAAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
15627013 CCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * *
15627078 CACCTG----CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
326 CGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * ** * * * * *
15627139 -AGACCAAAATGAGGGTTGCGGTAGCAGGATCGGCAGCATGTAGAGGGGGACCCGATCCATCCCC
391 CGGACCAGACCGAGGGTTGTGGTATCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * *
15627203 AGCTTGCCCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
456 GGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15627268 GCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGAC
521 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
15627333 TGACGGTTGCGGTAGCACATGCTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
586 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
15627398 CACCATCACCGGAGCATC-ACTGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGG
651 CACCATC-CCGGAGCATCGTC-GGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
15627462 TCGGGTGTGGGAGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGC
713 -C---CG-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
15627527 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGCGATTTTACAAGTT
772 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15627592 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATGGTCACAAAATCTT
837 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15627656 CTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * * **
15627721 CCTAGTTTGGGGCCAAAAATCCTTCCGAATAAATATTAAAAAATCTCGAACCGTAAAAAGTTTTG
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
15627786 AAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
15627851 ATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
15627916 CCACCTACCACCCTATCGATCCACGGTTTGCGCATCTCGTCTCTCTGGCCGACGTACTGCCCGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * ** * * *
15627981 TGCCCACCCGTCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGAT
326 CGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* * ** * *
15628046 CAGACCGGACCGAGGGTTACGGCAGT-AGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCC
391 CGGACCAGACCGAGGGTTGTGGTA-TCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * *
15628110 CGGCTTGTGCATCCTGCCCCTCTGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
455 CGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * **
15628175 GGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAACGGATAGGA
520 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * *
15628240 CTGAGGGGTGCGACAGCACATGATGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGT
585 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * *
15628305 GCA-C-T--------ATCGTCGAAGAAGCTGAACGGCGACATTGGGGTTCCGGCGATCGGGGGGG
650 GCACCATCCCGGAGCATCGTCGGAGAACCTG-ACCGCGGCATTGGGGTTCCGACGATC-GGGGGG
*
15628360 CCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
713 CC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15628425 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCT
776 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
15628490 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
841 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
15628550 GTACACTTCGAGTTTTTAGCTGAATTTTTTAGTACATGCCAACAAAAATAAAAGGATCATGCCTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
15628615 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTCC
66 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
15628680 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACC
131 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * **
15628745 ATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTAACTAAAC
196 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
15628810 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCC
261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * *
15628875 CGCCCGTCCA----CTCGTTTCATC-GATTGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGA
326 CGCCCGCCCACCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * * * * * * *
15628935 TTGGACCAGACTGAGGGTTATAGCAGCAGGATCGGCAACACGCAGAGGGGGACCCGACCGACCCC
390 TCGGACCAGACCGAGGGTTGTGGTATCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * * * *
15629000 CGGCTTACGCATCCTGCCCCTCTGGCAGGCTGAGCGTCCGAACGCTCGTTTGGTGGGTTGACTTA
455 CGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
15629065 GGCATACGGAGTTCACTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGTA
520 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * *
15629130 CCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGG
585 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* *
15629195 GCACCATCGCCTGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
650 GCACCATC-CCGGAGCATCGTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGG
* *
15629260 GCCGGGGTGGGTGTGCGCACATGATGTGCGAT-GGTGCTAGTACTTAGCCCTTATATTGGCCCCC
712 GCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
15629324 TATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
775 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
15629389 CGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTT
840 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** *
15629450 GTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATATGTA
1 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
15629515 CCAAGTTTG
66 CCAAGTTTG
15629524 TGGCAGCACA
Statistics
Matches: 3266, Mismatches: 340, Indels: 108
0.88 0.09 0.03
Matches are distributed among these distances:
875 226 0.07
876 176 0.05
884 2 0.00
885 188 0.06
887 2 0.00
889 1 0.00
890 269 0.08
891 3 0.00
892 1 0.00
894 471 0.14
895 4 0.00
896 6 0.00
897 307 0.09
898 64 0.02
899 2 0.00
900 243 0.07
901 84 0.03
902 721 0.22
903 220 0.07
906 1 0.00
907 50 0.02
908 225 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
CGGACCAGACCGAGGGTTGTGGTATCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCCCGGAGCATCGTCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
Found at i:15627305 original size:26 final size:26
Alignment explanation
Indices: 15627268--15627320 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15627258 GTTGACTTAG
*
15627268 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15627294 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15627320 G
1 G
15627321 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15628212 original size:26 final size:26
Alignment explanation
Indices: 15628176--15628228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15628166 GTTGACTTAG
*
15628176 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15628202 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15628228 G
1 G
15628229 AACGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15629102 original size:26 final size:26
Alignment explanation
Indices: 15629066--15629118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15629056 GTTGACTTAG
15629066 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
15629092 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15629118 G
1 G
15629119 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15629934 original size:383 final size:381
Alignment explanation
Indices: 15629144--15630288 Score: 1916
Period size: 383 Copynumber: 3.0 Consensus size: 381
15629134 GGGTTGCGGT
*
15629144 AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCTGA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
15629209 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
66 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
*
15629274 GCGCACATGATGTGCGATGGTGCTAGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
131 GCGCACATGATGTGCGATGGTGCTGGTACTTAGCCCTTATATTGG-CCCCTATCCCTCATCAAAC
* *
15629339 CTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
15629404 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAG
259 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACAC-TCGAGTTTTTAG
** **
15629469 CTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATATGTACCAAGTTTGTGGC
323 CTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTACGGC
* **
15629528 AGCACATGCTGGGCTCA-GCATGTGCTGGTGTCACATTTTTCTTCGTCAAGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* *
15629592 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
66 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
*
15629657 GCGCACATGATGTGCGATGGTGCTGGTACTTAGCCGTTATATTGGCTCCCTATCCCTCATCAAAC
131 GCGCACATGATGTGCGATGGTGCTGGTACTTAGCCCTTATATTGGC-CCCTATCCCTCATCAAAC
15629722 CTCGAGAACTCACACCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
195 CTCGAGAACTCACACCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
15629787 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACGTCGAGTTTTTAGC
260 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACAC-TCGAGTTTTTAGC
*
15629852 TGAATGTTTTTGTGCATGCCAACAAAAATACAATGATCACGTGTACCAAGTTTACGGC
324 TGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTACGGC
* *
15629910 AGCACCTGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * *
15629975 GCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGG-GGGTGT
66 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
*
15630039 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAA
131 GCGCACATGATGTGCGAT-GGTGCTGGTACTTAGCCCTTATATTGGCC-CCTATCCCTCATCAAA
* * *
15630104 TCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCGAGAACTCACA-CCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
15630169 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGAACACTCTGAGTTTTTA
258 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTC-GAGTTTTTA
* * *
15630234 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTT
322 GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTT
15630289 TGGGCCAAAA
Statistics
Matches: 716, Mismatches: 39, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
382 203 0.28
383 339 0.47
384 174 0.24
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (381 bp):
AGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGTGGGTGT
GCGCACATGATGTGCGATGGTGCTGGTACTTAGCCCTTATATTGGCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTCGAGTTTTTAGCTG
AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTACGGC
Found at i:15630749 original size:26 final size:26
Alignment explanation
Indices: 15630713--15630763 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15630703 TGACTTAGGG
15630713 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
15630739 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
15630764 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:15631766 original size:889 final size:882
Alignment explanation
Indices: 15630305--15632626 Score: 3151
Period size: 887 Copynumber: 2.6 Consensus size: 882
15630295 AAAACTCCTT
* * * * * *
15630305 CCGAACTGTAAAAAGTTTCAAAAACCGTGATAAATAGAAAATGAGTCATCTTGCCATGAAACTTC
1 CCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
* * *
15630370 ACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGGACACAAAA
66 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
*
15630435 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATCCCGTCTCTC
131 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
* *
15630500 TAGCCGACGTAGTGCCCGCCCGCCCGCCC-TCTCGTTTCGTCGGTTGGCTTAGGCATAC-ATAGT
196 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCTCGTTTCATCGGTTGGCTTAGGCATACGA-AGT
* * * * * ** * *
15630563 TCATTCCCAGTCTAAGATTGGACC-AGACCGAGGGAT-ATAGTAGCAAGATCGTTAGCACACAGA
260 TCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCT-GCAGCAGGATCGGCAGCACGCAAA
* * *
15630626 GGGGGACCCGGTTGATCTCCGAG-TTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGC
323 GGGGGACCCGGTCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC-CACGC
* * * *
15630690 TCATTTAATGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
386 TCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-C
* * * * *
15630755 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGTATGTGTTGGTG
450 C---C-AAGATCAGACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTG
* * * * *
15630820 CGGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCTGGAAAACCTGACCGGCGGCATTA
511 AGGCAATTTTCTTCACCAGGGCACCATCACCAGAGCATCGCCGGAAAACCTGACCGGCGGCATTA
* *
15630885 GGGTTCCAACGATCGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
576 GGGTTCC-ACGATCGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATAT
*
15630950 TGGGGCCCC-ATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCAATTGAGATTTTA
640 T-GGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA-CCCCTTAAAGAGCAATTGAGATTTTA
15631014 CAGGTTTG-TCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
703 CAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
15631078 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCT
767 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
** *
15631143 CGTCTACCAAGTTTGGTGCCAAAAATCCTTCTGAAAAAATTTGAAAAAATC
832 CACCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTGAAAAAATC
15631194 CCGAACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
1 CCGAA-CAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * * *
15631258 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGA
65 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAA
* * * * *
15631323 AATATTAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAAGGCTTACGCATCCCGTCTCT
130 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCT
* * *
15631388 CTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGTCCGCTGGTTTCATCGGTTGGCTTAGGCATACGA
195 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGT---CTCGTTTCATCGGTTGGCTTAGGCATACGA
15631453 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAA
257 AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAA
**
15631518 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGC
322 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC-CACGC
* * ** * *
15631583 TTGTTTTGTATGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCCTACGGAGTTCATTCC
386 TCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
15631648 C-AGATCAGACCGGATCAAGGGTTATGGCACAGTACATGCTAGGCTTGGGCATGTGTTGGTGAGG
451 CAAGATCAGACCGGACCAAGGGTTACGG--CAGCACATGCTAGGCTCGGGCATGTGTTGGTGAGG
* * *
15631712 CAATTTTCTTCACCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
514 CAATTTTCTTCACCAGGGCACCATCACCAGAGCATCGCCGGAAAACCTGACCGGCGGCATTAGGG
* *
15631777 TTTCACGATCGGGGGTGTGTGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGC
579 TTCCACGATCGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGC
* * *
15631842 CCCCTATCCCTCTTCAAACCTTGAGAACTCACACCCCTTAAAGAGCAATTGAGATTTTACAGGTT
644 CCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCTTAAAGAGCAATTGAGATTTTACAGGTT
*
15631907 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATCTTG
709 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
15631972 TACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTAC
774 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTAC
* * *
15632037 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAATC
839 CAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTGAAAAAATC
* * * * *
15632081 TCGAACAGTAAAAAGTTTTAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTC
1 CCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
15632146 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
66 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
* * * * *
15632211 ATATGAAGATGTTCCTAAACCCATCTACCACGCTATCAATCCACGGCTTGCGCATCCCGACGCTC
131 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
* *
15632276 TGGCCGACGTAGTGCCTGCCCGCCCGCCCGT-TCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
196 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTT
* * * ** * * *
15632340 CATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCGGCAGCAGAATCAGCAGCACGCAGAA-G
261 CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCA-AAGG
* * * *
15632404 GGGATCCGGTCGATCCCC-GCTTGCACAT-CCGCCCCTCTGGCCGACTGAGCACCCGACGCTCGT
325 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCCACGCTCGT
*
15632467 TTCGTGGGTTGACTTAGGCATAAACGGAGTTCATT-CCAGTCTAAGGCATACGGAAGGTTCATTC
390 TTAGTGGGTTGACTTAGGCAT--ACGGAGTTCATTCCCAGTCTAA-GCATACGG-A-GTTCATTC
* * * * * * *
15632531 CCGAGTCTTATGATCAGACCAGACCGAGGCTTGCGGTAACACAAGCTAGGCTCGGGCATGTGTTG
450 CC-A-----A-GATCAGACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGTTG
** * **
15632596 GTGCCGCATTTTTCTTCACTGGGGCACCATC
508 GTGAGGCAATTTTCTTCACCAGGGCACCATC
15632627 GCCAAAGAAC
Statistics
Matches: 1260, Mismatches: 145, Indels: 55
0.86 0.10 0.04
Matches are distributed among these distances:
880 25 0.02
881 34 0.03
882 27 0.02
883 100 0.08
884 12 0.01
886 2 0.00
887 421 0.33
888 81 0.06
889 292 0.23
890 52 0.04
891 1 0.00
892 22 0.02
893 188 0.15
894 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
CCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTT
CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAAAGGG
GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCCACGCTCGTT
TAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAGA
TCAGACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGAGGCAATTTT
CTTCACCAGGGCACCATCACCAGAGCATCGCCGGAAAACCTGACCGGCGGCATTAGGGTTCCACG
ATCGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAAAACTCACACCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTACCAAGTTT
GGGGCCAAAAATCCTTCTGAAAAAATTTGAAAAAATC
Found at i:15632781 original size:26 final size:26
Alignment explanation
Indices: 15632745--15632795 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15632735 CCCTACTTAG
15632745 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15632771 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
15632796 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15632859 original size:255 final size:258
Alignment explanation
Indices: 15632478--15632992 Score: 810
Period size: 255 Copynumber: 2.0 Consensus size: 258
15632468 TCGTGGGTTG
* *
15632478 ACTTAGGCATAAACGGAGTTCATTCCAGTCTAAGGCATACGGAAGGTTCATTCCCGAGTCTTATG
1 ACTTAGGCAT-AACGGAGTTCATTCCAATCTAAGGCATACGGAAGGTTCATTCCCGAGTCTTACG
*
15632543 ATCAGACCAGACCGAGGCTTGCGGTAACACAAGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTT
65 ATCAGACCAGACCGAGGCTTGCGGTAACACAAGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTT
*
15632608 TCTTCACTGGGGCACCATCGCCAAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGG
130 TCTTCACTGGGGCACCATCGCCAAAGAACCTGA-CGACGGCATTGGGGTTCCGACGATCCGAGGG
* *
15632673 GTCGGGCGGGGTGTGCGCATATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
194 GTCGGGCGGGGTGTACGCATATGATGTGTGATGGGTGCT-GTACTTGGCCCTTATATTGACCCCC
15632738 T
258 T
15632739 ACTTAGGCAT-ACGGAGTTCATTCCCAATCTAA-GCATACGG-A-GTTCATTCCC-AGTC-TACG
1 ACTTAGGCATAACGGAGTTCATT-CCAATCTAAGGCATACGGAAGGTTCATTCCCGAGTCTTACG
* * * *
15632798 ATCGGACC-GAACCGAGGCTTGCGGTAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTT
65 ATCAGACCAG-ACCGAGGCTTGCGGTAACACAAGCTAGGCTCAGGCATGTGTTGGTGCCGCATTT
* * * *
15632862 TTCTTGACTGGGGCACCATTGCCAGAGAACCTGACGACGGCATTGGGGTTCCGATGATCCGAGGG
129 TTCTTCACTGGGGCACCATCGCCAAAGAACCTGACGACGGCATTGGGGTTCCGACGATCCGAGGG
15632927 GTCGGGCGGGGTGTACGCATATGATGTGTGATGGGTGCTGTACTTGGCCCTTATATTGACCCCCT
194 GTCGGGCGGGGTGTACGCATATGATGTGTGATGGGTGCTGTACTTGGCCCTTATATTGACCCCCT
15632992 A
1 A
15632993 TCCCTCATCA
Statistics
Matches: 238, Mismatches: 14, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
253 26 0.11
254 68 0.29
255 91 0.38
256 4 0.02
257 10 0.04
258 1 0.00
259 20 0.08
260 8 0.03
261 10 0.04
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (258 bp):
ACTTAGGCATAACGGAGTTCATTCCAATCTAAGGCATACGGAAGGTTCATTCCCGAGTCTTACGA
TCAGACCAGACCGAGGCTTGCGGTAACACAAGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTT
CTTCACTGGGGCACCATCGCCAAAGAACCTGACGACGGCATTGGGGTTCCGACGATCCGAGGGGT
CGGGCGGGGTGTACGCATATGATGTGTGATGGGTGCTGTACTTGGCCCTTATATTGACCCCCT
Found at i:15634038 original size:883 final size:887
Alignment explanation
Indices: 15629903--15635462 Score: 5446
Period size: 883 Copynumber: 6.3 Consensus size: 887
15629893 TGTACCAAGT
* * * * *
15629903 TTACGGCAGCACCTGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * *
15629968 CGCCGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGG
66 CGTCGGAGCATCCTCGGAGAACCTGA-TGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGG
* *
15630033 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTC
130 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
15630098 ATCAAATCTCAAGAACTCACATCC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
195 ATCAAACCTCGAGAACTCACA-CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
15630162 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGAACACTCTGA
259 AGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
15630227 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTTGG
324 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
15630292 GCCAAAACTCCTTCCG----AA--CT-----G--TAAAAAGTTTCAAAAACCGTGATAAATAGAA
389 GCCAAAACTCCTTCCGAAAAAATTTTAAAACGACTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* ** *
15630344 AATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGC
454 AACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15630409 CATAAAAATGGCATTGGGACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
519 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
15630474 TCCACGGCTTGTGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCG
584 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCG
** ** * * * * *** *
15630539 TCGGTTGGCTTAGGCATACATAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGATATAGT
649 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGC
* ** * ** *
15630604 AGCAAGATCGTTAGCACACAGAGGGGGACCCGGTTGATCTCCGAG-TTGCGCATCCCGCCCCTCT
714 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCG-GCTT--GCATCCCGCCCCTCT
** * * ** *
15630668 GGCCGGTTGAGCACCCGCACGCTCATTTAATGGGTTGACTTAGGGATACGAAGTTCATTCCCAGT
775 GGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGT
*
15630733 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
839 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
* * * **
15630782 TTGCGGCAGCACATGCTGGGCTCGGGTATGTGTTGGTGCGGCATTTTTCTTCACCGGGGCACCAT
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * * *
15630847 CGCCAGAGCATCGCT-GGAAAACCTGACCGGCGGCATTAGGG-TTC--C-AAC-----GATC--G
66 CGTCGGAGCATC-CTCGGAGAACCTGA-TGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGG
* * *
15630900 GGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGGCCCC-ATCCC
129 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCC
* * *
15630964 TCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTG-TCGCCA
193 TCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCA
* *
15631028 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
257 GTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* *
15631093 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCTCGTCTACCAAGTTTG
322 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
15631158 GTGCCAAAAATCCTTCTGAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATG
387 GGGCCAAAACTCCTTCCGAAAAAATTT--TAAAA---CG-A-C-TAAAAAGTTTCAAAAATCATG
* * *
15631223 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
444 AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * *
15631288 ATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACTCACCTACC
509 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15631353 ACCCTATCGATCCAAGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCC
574 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG--C-CC-GCCC
* * * * * *
15631418 GTCCGCTGGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAA
635 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * *
15631483 CCGAGGGTTGCTGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGC
700 TCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTT--GC
* * * ** *
15631548 ATCCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTTGTTTTGTATGTTGACTTAGGCATATGGA
762 ATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGA
* * *
15631613 GTTCATTCCCAGTCTAAGCCTACGGAGTTCATT-CC---C--AGATCAGACCGGATCAAGGG
826 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
* * * * ** * ** *
15631669 TTATGGCACAGTACATGCTAGGCTTGGGCATGTGTTGGTGAGGCAATTTTCTTCACCAGGGCACC
1 TTACGG--CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACC
** *
15631734 ATCACCGGAGCATCGC-CGGAGAACCTGACCGGCGGCATTGGGGTTTC-ACGATC--GGGGGT--
64 ATCGTCGGAGCATC-CTCGGAGAACCTGA-TGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCG
* *
15631793 -----GTGT--GCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
127 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15631851 CTCTTCAAACCTTGAGAACTCACACC-CCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCA
192 CTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15631915 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACACTTC
257 GTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * **
15631980 GATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTACCAAGTTTG
322 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
15632045 GGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAATCTCGAACAGTAAAAAGTTTTAAAAATCATG
387 GGGCCAAAACTCCTTCCGAAAAAATTTT--AAAA---CG-AC--TAAAAAGTTTCAAAAATCATG
* *
15632110 AAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
444 AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
15632175 ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTTCCTAAACCCATCTACC
509 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
15632240 ACGCTATCAATCCACGGCTTGCGCATCCCGACGCTCTGGCCGACGTAGTGC-CTGCCCGCCCGCC
574 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTC-GCCCGCCCGCC
* * *
15632304 CGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CT
638 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-
* * * *
15632368 AAGGGTTGCGGCAGCAGAATCAGCAGCACGCAGAAGGGGATCCGGTCGATCCCC-GCTTGCA-CA
702 AAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCATC-
*
15632431 TCCGCCCCTCTGGCCGACTGAGCACCC-GACGCTCGTTTCGTGGGTTGACTTAGGCATAAACGGA
765 -CCGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCAT--AC-GA
* * * *
15632495 GTTCATT-CCAGTCTAAGGCATACGGAAGGTTCATTCCCGAGTCTTATGATCAGACCAGACCGAG
826 GTTCATTCCCAGTCTAA-GCATACGG-A-GTTCATTCCC-AGTC-TAAGATCGGACCGGATCGAG
*
15632559 GC
886 GG
* * * * * *
15632561 TTGCGGTAACACAAGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-ACTGGGGCACCA
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA
* ** * * *
15632625 TCGCCAAAG-AACCT----G-ACC-GA---CGGCATTGGGGTTCCGACGATCCGGGGGGTCGGGC
65 TCGTCGGAGCATCCTCGGAGAACCTGATGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGG-
*
15632680 GGGGTGTGCGCATATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA---CT
129 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** * ** ** ** ** ** *
15632742 --T-AGGCATACG-GAGTTCATTCC-CAATCTA-AGCATACG-GA-GTT-CA---TT-C--CCAG
194 CATCAAACCT-CGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* ** ** * * ** * * ** * ** *
15632792 T--CTACGATCG-GACCGAACCGAGG---CTTGCGGTAGCACATGCTGGGCTCAGGC-ATGTGTT
258 TAGCCATTAAAGTGTCAGAAATGGGGACACTT---TTTTCA-A--AT-GG-TCA--CAAAATCTT
* * *** ** * ** *
15632850 GGTGC-C---GCA-TTTTT--CTTG-A--CTGGGGCACCATTGCCAGA-GAACCTGACGACGGCA
313 -GTACACTTTG-AGTTTTTAGC-TGAATTTTTTTG-TGCA-TGCCA-ACAAAAAT-AC-AAGG-A
*** * ** * *** *** * * ** * * *** *
15632904 TTGGGGT-T-CCGATGATCCGAGGGGTC-GGGCGGGGTGTACGCATATGATGTGTGATGGGTGCT
369 -TCACGTCTACC-AAG-T--TTGGGGCCAAAAC-TCCT-TCCG-AAAAAAT-TTTAAAACG-ACT
** * * **** **** ***** * * ** * * * *
15632966 --GTACTTGGCCCTTAT-ATTGACCCCCTATCCCTC-A-TCAAACCTCGAGAACTCACAC-CCCC
424 AAAAAGTT-TCAAAAATCA-TGA-AAAATAGAAAACGAGTC--GCCTTG-CCA-TGAAACTTCAC
* * * * * * ** *
15633025 TTAAAGAGCATT---TGA-GATTTTACAGGTTTGCTACAGTAGCCATAAAAATGGCATTGGCACG
482 GTGAAG-GC-TTAAGGGACCATTGTA-TGAATT--TACA--AGCCATAAAAATGGCATTGGCACA
* * * *
15633086 TAGAAAGATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCATGGCTTGCGCATCCCGT
540 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
*
15633151 CTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTGGTTTCGTCGGTTGGCTTAGGCATACGG
605 CTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
15633216 AGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACGGCAGTAGGATTGGCAACACGTAG
670 AGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* *
15633281 AGGGGGACCTGGCCGATCCCCGGCTTGCATCCCGCCCCTCTGGCCGAC-GAGCACCTACACACTC
735 AGGGGGACC-GGCCGATCCCCGGCTTGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCTC
*
15633345 GTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAG
799 GTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
15633410 TCTAAGATCGGATCGGATCGAGGG
864 TCTAAGATCGGACCGGATCGAGGG
* * * *
15633434 TTGCGACAGCACATACTGGGATCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * *
15633499 CGTCGGGGCATCACT-GGAGAATCTGACTGGTGGCATTGGGGTTTCGACGATCGGGGGGGTCGTG
66 CGTCGGAGCATC-CTCGGAGAACCTGA-TGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGG
*
15633563 GGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCT
129 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
15633627 CATCAAACCTCAAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
194 CATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15633692 AGCCAATAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
259 AGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
*
15633757 GTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
324 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
15633822 GCCAAAACTCCTTCCGAAAAAATTTT-AAA-G-C-AAAAAGTTTCAAAAATCATGAAAAATAGAA
389 GCCAAAACTCCTTCCGAAAAAATTTTAAAACGACTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
15633883 AACGAGTCACCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15633948 CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACTCGCCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
15634013 TCCATGGTTTGCGCATCCCGTCTCTCTGGCCGGCATA--G-T-GCCCGTCCGCCCGCTCGTTTCG
584 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCG
* * * * * **
15634074 TTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTTTGGC
649 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGC
* * * * *
15634139 AGCAGGATCGGCAGCATGTAGAAGGGGATCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTG
714 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTT--GCATCCCGCCCCTCTG
* **
15634204 GCC-AGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACGTAGGCATGTGGAGTTCATTCCCAGT
776 GCCGA-CTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCAT-ACGAGTTCATTCCCAGT
* *
15634268 CTAAGCGTACGGAGTTCATTCCCAGTCTGAGATCGGACCGGA-CTGAGGG
839 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGG
*
15634317 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * *
15634382 CGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATC-CGGGGGTCGGGG
66 CGTCGGAGCATCCTCGGAGAACCTGA-TGGCGGCATTGGGGTTTCGACGATCGGGGGGGTC-GGG
* *
15634446 GGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCC
129 GG-GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15634511 TTATCAAACCTCGAGAACTCACACC-CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
193 TCATCAAACCTCGAGAACTCACACCACC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
15634575 GCAGCCATTAAAGTGTCTG-AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTT
257 GTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * *
15634639 GAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTG
322 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** ** *
15634704 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAACTTTTTGAAAATCGTG
387 GGGCCAAAACTCCTTCCGAAAAAATTTT--AAAA---CG-A-C-TAAAAAGTTTCAAAAATCATG
* *
15634769 AAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
444 AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** *
15634834 ATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCGAAAACCCACCTAC
509 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC-TAAACCCACCTAC
* * * * * *
15634899 CACCTTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTACCCGCTCGCCCGCG
573 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCTCGCCCGCC
* * *
15634964 CACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACTGG
634 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* *
15635029 ATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGCACCCGGCCGTTCCCCGGCTTGCG
699 ATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGC-
* * * * *
15635094 TATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTACGCATACGG
762 -ATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G
* * * *
15635159 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGCT-GAGGG
825 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
*
15635221 TTACGGCAGAACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
1 TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * * *
15635286 CATCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGG-TTCCAGCGGTTGGGGGGGCCCGG
66 CGTCGGAGCATCCTCGGAGAACCTGAT-GGCGGCATTGGGGTTTCGA-CGATCGGGGGGGTCGGG
*
15635350 GGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
129 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
15635415 CATCAAACTTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTT
194 CATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTT
15635463 TTCAAATGGT
Statistics
Matches: 3856, Mismatches: 594, Indels: 438
0.79 0.12 0.09
Matches are distributed among these distances:
867 3 0.00
868 248 0.06
869 5 0.00
870 5 0.00
872 4 0.00
873 88 0.02
874 28 0.01
875 30 0.01
876 30 0.01
877 31 0.01
878 31 0.01
879 240 0.06
880 304 0.08
881 66 0.02
882 85 0.02
883 424 0.11
884 229 0.06
885 106 0.03
886 22 0.01
887 424 0.11
888 92 0.02
889 289 0.07
890 70 0.02
891 6 0.00
892 78 0.02
893 200 0.05
894 5 0.00
895 12 0.00
896 131 0.03
897 59 0.02
898 7 0.00
899 17 0.00
900 5 0.00
901 15 0.00
902 14 0.00
903 111 0.03
904 115 0.03
905 227 0.06
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (887 bp):
TTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
CGTCGGAGCATCCTCGGAGAACCTGATGGCGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGG
GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAACGACTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAG
CAGGATCGGCAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCATCCCGCCCCTCTGGCCGA
CTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
Found at i:15635181 original size:26 final size:26
Alignment explanation
Indices: 15635151--15635203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15635141 GTTGACTTAC
*
15635151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGCCTAA
15635177 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCTAGCCTAA
15635203 G
1 G
15635204 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGCCTAA
Found at i:15637611 original size:26 final size:26
Alignment explanation
Indices: 15637575--15637627 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637565 GTTGACTTAG
*
15637575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15637601 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15637627 G
1 G
15637628 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15638481 original size:26 final size:26
Alignment explanation
Indices: 15638452--15638507 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
15638442 AGGGTTGACT
*
15638452 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
15638478 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
15638504 TAAG
1 TAAG
15638508 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:15638602 original size:880 final size:883
Alignment explanation
Indices: 15636727--15640117 Score: 4183
Period size: 880 Copynumber: 3.8 Consensus size: 883
15636717 GTTGGCTTAG
* * * * *
15636727 GCATACGGAGTTCATTCTCAATCTAAGATCGGACAAGACCGACGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
15636792 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCGC--GAGCATCGTCGGAGA
* * * *
15636857 ACCTGACTGGCGACGTTGGGGTTCCGACGATGGGGTGGGCCGAGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGA-----T----CGAGGGGGTGTGCGCACATGATGTG
* * *
15636922 CGATGGGTGCTGGTATTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15636987 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
* * *
15637052 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGATTTCAAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15637117 TGCATGCCAATAAAAATACAAAGATCACGTCTACCAAGTTTGGGG-TAAAACCTGCTTCCAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGAAAA
* * ** * *
15637181 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
444 AATTTTAAAAAATCC-CAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15637246 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTAAAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGC
* * *
15637311 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACGGCTTGC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15637376 GCATCCCG--TCTCT------C-T--G---G-CCG---G---CATTTCGTCGGTTTGCTTAGGCA
638 GCATCCCGTCTCTCTGGCCGACGTACGCTCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
15637420 TA-GGAGTTCATTCCTAGTCTAAGAT-TGAACCGGACCGAGGGTTGC-AGCAGCATGATCGACAT
703 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGA-CAGTAGGATCG-CAG
* * * **
15637482 CATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCATATCCTGCCCCTCTGGCCGGCTGAGCGCC
765 CACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCAACCCCTCTGGCCGGCTGAGCGCC
* * * *
15637547 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CGCATGCTAGTTTCGAGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15637601 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGA-GGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTT-ACGGCAGCACATGCTGG
* * *
15637665 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCGTCGTCTGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCG-C-GAGCATCGTCGGAG
* *
15637730 AACCTGACCGACGGTATTGGGGTTCCGACGATCGAGGGGGT-TGCGCAAATGATGTGCGATGGGT
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
15637794 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
15637859 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA-
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
**
15637923 TTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCACATGC
323 TTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
15637988 CAA-AAAAATTACAAGGATCATGTCTACCAAGTGTAGGGCCAAAACTCCTT-CTAAAAAATTTAA
387 CAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
15638051 AAAAATCTCAAACGTAAAAAGATTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGA
451 AAAAATCCCAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
15638116 AACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
516 AACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
15638181 GCAGAAATATGAAGGTGTGCCGAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCG
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
15638246 TCTCTCTGGCCGACGTA-G-T-GCCCGCCCGCTT-GTTTCGTCGGTTGGCTTAAGCATACGGAGT
646 TCTCTCTGGCCGACGTACGCTCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
15638307 TCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTAGGATCTGTAGCACGTAGAGG
711 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATC-GCAGCACGTAGAGG
* * * * *
15638372 GGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCATGCTCG
775 GGGACCCGACCGATCCTCGGCTTGCACATCCAACCCCTCTGGCCGGCTGAGCGCCCGCATGCTAG
15638437 TTTCGAGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
840 TTTCGAGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
15638481 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
15638546 CTCAGGCATGTGCTGGTGCCGTATTTTTCCTCGTCGGGGCACCATCGTCAGAGCATCATCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCG-C-GAGCATCGTCGGAGA
* * *
15638611 ACCTGACCGACGGCATTGGGTTTTCGACGATC---GGGG-G-G-GC-C--G--GTGCGGTGGGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * **
15638665 CCGGCATTTGGCCCTTATATTAGATCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
15638730 AAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
15638795 TTTTTCAATTGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGGA-TTTTTCGTGCATGCCG
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
*
15638859 AAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
15638923 AAATCCCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
453 AAATCCC-AAACGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
** * *
15638987 AACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
516 AACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* ** * *
15639052 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTACTTGTGCATCCCA
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
15639117 TCTCTCTGGCCGGCGTAGTGCCCGCTCGCCTGCCTGCCCGCTTCTTTTCGTTGGTTGGCTTAGGC
646 TCTCTCTGGCCGACGTA-----CGCTCG-C--CC-GCCCGCTTCGTTTCGTCGGTTGGCTTAGGC
* * **
15639182 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCAGCAGC
702 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATC-GCAGC
* * * **
15639247 ACGTAGAGGGGGACCCGGCTGATCCTCGACTTGTTCATCCAACCCCTCTGGCCGGCTGAGCGCCC
766 ACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCAACCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
15639312 GTATGCTATTTTC-ATGGTTTGACTTACGCATACGCAGTTCAGTCCCAGTCTAA
831 GCATGCTAGTTTCGA-GGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
15639365 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
15639430 CTCGGGCATATGCTGGTG-C-TACACTTTCCT--TC---G-----TCG-GAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGTA-TTTTTCCTCACCGGGGCACCATCGCGAGCATCGTCGGAGAA
*** * * *
15639482 CCTGACCGGTAGCATTGGGGTTTCGGCGATCGGGGTGGTTGGGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGG-TTC--CGA-C-----GATCGAGGGGGTGTGCGCACATGATGTGC
* *
15639547 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCATACCT-GAAGAACTCAC
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCAC
* *
15639611 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGAGCCATTAAAGTGTATGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
* *
15639676 GGGGACACGTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15639741 TGCATGCCAACAAAAATACAAGGAT-ATGTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
15639805 ATTTTTAAAAAATCCCAAACCGCGAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
445 A-TTTTAAAAAATCCCAAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15639870 TGTCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGC
* * * * **
15639935 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCAATCCACAGCTTAT
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15640000 GCATCCCGTCTCTATGGCCGATGTAGTGCCCGCTCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
638 GCATCCCGTCTCTCTGGCCGACGTA-----CGCTCGCCCGCCCGCT---TCGTTTCGTCGGTTGG
* * *
15640065 CTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG
695 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
15640118 TGGCAGCACA
Statistics
Matches: 2203, Mismatches: 235, Indels: 142
0.85 0.09 0.06
Matches are distributed among these distances:
862 171 0.08
863 29 0.01
864 236 0.11
865 13 0.01
869 50 0.02
870 228 0.10
871 192 0.09
872 2 0.00
873 7 0.00
874 143 0.06
875 3 0.00
876 1 0.00
877 6 0.00
878 2 0.00
879 25 0.01
880 297 0.13
881 5 0.00
882 8 0.00
883 17 0.01
884 248 0.11
885 2 0.00
886 1 0.00
887 7 0.00
888 3 0.00
889 1 0.00
890 275 0.12
891 230 0.10
892 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCGCGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTACGCTCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGCAGCACGTAGAGGGGGACC
CGACCGATCCTCGGCTTGCACATCCAACCCCTCTGGCCGGCTGAGCGCCCGCATGCTAGTTTCGA
GGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15639368 original size:26 final size:26
Alignment explanation
Indices: 15639339--15639391 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639329 TTTGACTTAC
15639339 GCATAC-GCAGTTCAGTCCCAGTCTAA
1 GCATACAG-AGTTCAGTCCCAGTCTAA
*
15639365 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
15639391 G
1 G
15639392 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:15640037 original size:891 final size:878
Alignment explanation
Indices: 15637399--15640123 Score: 3437
Period size: 890 Copynumber: 3.1 Consensus size: 878
15637389 CTGGCCGGCA
* * * *
15637399 TTTCGTCGGTTTGCTTAGGCATA-GGAGTTCATTCCTAGTCTAAGAT-TGAACCGGACCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGT
* * * * * * **
15637462 TGCAGCAGCATGATCGACATCATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCAT-ATCCTGC
65 TGCGGCAGTAGGATCG-CAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTG-ATCATCCAAC
* * *
15637526 CCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
128 CCCTCTGGCCGGCTGAGCGCCCGCATGCTT-TTTCATGGGTTGACTTAAGCATACGGAGTTCATT
* * *
15637591 CCCAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGAGGCAGC
192 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGC
** *
15637656 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCGTCGTCTGAGCA
257 ACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTCCTT-----------CGTCG--TGAGCA
* * * *
15637721 TCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCG-AGGGGGT-TGCGCAAATGATG
309 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCG-CGATCGTGGGGGGTGTGCGCACATGATG
15637784 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
373 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15637849 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
438 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGAGCCATTAAAGTGTCTGAA
15637914 ATGGGGACA-TTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
503 ATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * * *
15637978 TTGCACATGCCAA-AAAAATTACAAGGATCATGTCTACCAAGTGTAGGGCCAAAACTCCTTCTAA
567 TTGTGCATGCCAACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAA
* * * * *
15638042 AAAATTTAAAAAAATCTCAAA-CGTAAAAAGATTCAAAAATCATGAAAAATAAAAAATGAGTCGT
631 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15638106 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATG
696 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATG
* * * *
15638171 GCATTGGCATGCAGAAATATGAAGGTGTGCCGAAACCCACCTATCACCCTATCGATCCACGGCTT
761 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
*
15638236 GCGCATCCCGTCTCTCTGGCCGACGTA------G-T-G-C-CCGCCCGCTT-G
826 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCGCCGCCCGCTTCG
* * * *
15638278 TTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * ** *
15638343 GCGACAGTAGGATCTGTAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCC
66 GCGGCAGTAGGATC-GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGATCATCCAACCC
* * *
15638408 CTCTGGCCGGTTGAGCACCCGCATGCTCGTTTCGA-GGGTTGACTTAAGCATACGGAGTTCATTC
130 CTCTGGCCGGCTGAGCGCCCGCATGCT-TTTTC-ATGGGTTGACTTAAGCATACGGAGTTCATTC
* * * *
15638472 CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
193 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCA
* *
15638537 CATGCTGGGCTCAGGCATGTGCTGGTGCCGTA-TTTTTCCTCGTCGGGGCACCATCGTCAGAGCA
258 CATGCTGGGCTCGGGCATGTGCTGGTG-C-TACATTTTCCT--TC---G-----TCGT--GAGCA
* * *
15638601 TCATCGAAGAACCTGACCGACGGCATTGGGTTTTCGACGATC----GGGG-G-G-GC-C--G--G
309 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCG-CGATCGTGGGGGGTGTGCGCACATGATG
* * * * * **
15638654 TGCGGTGGGTGCCGGCATTTGGCCCTTATATTAGATCCCTATCCCTCATCAAACCTCGAGAACTC
373 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15638719 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC-AGTAGCCATTAAAGTGTCTGA
438 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAG-AGCCATTAAAGTGTCTGA
* * *
15638783 AATGGGGACACTTTTTTCAATTGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGGA-TTTT
502 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
15638847 TCGTGCATGCCGAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGA
567 TTGTGCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGA
*
15638911 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAAACGAGTC
630 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTC
* ** *
15638975 ATCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
694 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAA
* *
15639040 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTA-
759 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AG
* * *
15639104 CTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCTGCCTGCCCGCTTCT
823 CTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCC-GCC-GCCCGCTTCG
* * *
15639162 TTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * *
15639227 GCGGTAGTAGGATCAGCAGCACGTAGAGGGGGACCCGGCTGATCCTCGACTTGTTCATCCAACCC
66 GCGGCAGTAGGATC-GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGATCATCCAACCC
* * * * *
15639292 CTCTGGCCGGCTGAGCGCCCGTATGCTATTTTCATGGTTTGACTTACGCATACGCAGTTCAGTCC
130 CTCTGGCCGGCTGAGCGCCCGCATGCT-TTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCC
* * * **
15639357 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAC
194 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAC
* *
15639422 ATGCTGGGCTCGGGCATATGCTGGTGCTACACTTTCCTTCGTCG-GAGCATCGTCGGAGAACCTG
259 ATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTCCTTCGTCGTGAGCATCGTCGGAGAACCTG
***
15639486 ACCGGTAGCATTGGGGTTTCGGCGATCGGGGTGGTTGGGGGGGTGTGCGCACATGATGTGCGATG
324 ACCGACGGCATTGGGGTTTC-GCGATC------G-T-GGGGGGTGTGCGCACATGATGTGCGATG
* *
15639551 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCATACCT-GAAGAACTCACACCC
380 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCC
*
15639615 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGAGCCATTAAAGTGTATGAAATGGGG
444 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGAGCCATTAAAGTGTCTGAAATGGGG
* *
15639680 ACACGTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
509 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
15639745 TGCCAACAAAAATACAAGGAT-ATGTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTT
574 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAAA-TT
** * *
15639809 TTAAAAAATCCCAAACCGCGAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTC
637 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
15639874 ATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTG
702 ATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
15639939 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCAATCCACAGCTTATGCAT
767 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCAT
* * *
15640004 CCCGTCTCTATGGCCGATGTAGTGCCCGCTCGCCCGCCCGCTCGC-TCG
832 CCCGTCTCTCTGGCCGACGTAGTGCCCGCTCG-CCG-CCGCCCGCTTCG
* * *
15640052 TTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
*
15640117 GTGGCAG
66 GCGGCAG
15640124 CACATGCTGG
Statistics
Matches: 1595, Mismatches: 177, Indels: 137
0.84 0.09 0.07
Matches are distributed among these distances:
869 47 0.03
870 238 0.15
871 188 0.12
872 2 0.00
873 3 0.00
875 3 0.00
876 1 0.00
877 5 0.00
878 3 0.00
879 22 0.01
880 271 0.17
881 11 0.01
882 8 0.01
883 18 0.01
884 248 0.16
885 2 0.00
886 1 0.00
888 1 0.00
889 1 0.00
890 276 0.17
891 241 0.15
892 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGGCAGTAGGATCGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGATCATCCAACCCC
TCTGGCCGGCTGAGCGCCCGCATGCTTTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCTACATTTTCCTTCGTCGTGAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTTCGCGATCGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAAGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAAATCCCAA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCTCGCCGCCGCCCGCTTCG
Found at i:15640757 original size:709 final size:709
Alignment explanation
Indices: 15639522--15641522 Score: 3222
Period size: 709 Copynumber: 2.8 Consensus size: 709
15639512 CGGGGTGGTT
15639522 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
15639587 CCTCT-TCATACCTGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCT-TATCATACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
15639651 CAAGAGCCATTAAAGTGTATGAAATGGGGACACGTTTTTCAAATGGTCACAAAGTCTTGTACACT
130 CAAGAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
15639716 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATATGTCTACCAAGTTT
195 TCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATATGTCTACCAAGTTT
*
15639781 GGGGCCAAAACTGCTTTCGAAAAAATTTTTAAAAAATCCCAAACCGCGAAAGGTTTCAAAAATCA
259 GGGGCCAAAACT-CTTTCGAAAAAATTTTTAAAAAATCCTAAACCGCGAAAGGTTTCAAAAATCA
15639846 TGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTAT
323 TGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAA-GGACCAATGTAT
*
15639911 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTC
387 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
*
15639976 CCACCCTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCTCGCCCGC
452 CCACCCTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCCCGCCCGC
*
15640041 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCA
517 CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCA
*
15640106 GATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG
582 GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG
* * *
15640171 GGGCACCATCGCCGCAGTGTCATCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATC-G
647 GGGCACCATCGCCGCAGTGTCACCGGAGAACCTGACAGGCGACATTTGGGTTCCGACGATCGG
* *
15640233 GGGGGGGTGTGCGCACGTGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
15640298 CCTTATCATACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTTATCATACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
15640363 AAGAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AAGAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
15640428 CGAGTTTATAGCTGAA-TTTTTGTGCATGCCAACAAAAATACAAGGATATGTCTACCAAGTTTGG
196 CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATATGTCTACCAAGTTTGG
* * *
15640492 GGCCAAAACTCCTTTCAAAAAAATTTTTTAAAAAATCCTGAACCGCGAAAGGTTTCGAAAATCAT
261 GGCCAAAACT-CTTTCGAAAAAA-TTTTTAAAAAATCCTAAACCGCGAAAGGTTTCAAAAATCAT
15640557 GAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGACCAATGTATGA
324 GAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGACCAATGTATGA
*
15640622 ATTTACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* *
15640687 ACCTTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCCCGCCCGCTC
454 ACCCTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCCCGCCCGCCC
*
15640752 GCTCGCTCGTTTCGTCGATTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
519 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
*
15640817 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
584 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
* * *
15640882 GCACCATCGCCGCAGTGTCACCGGAGAACCTGATAGGTGACATTTGGGTTTCGACGATCGGGG
649 GCACCATCGCCGCAGTGTCACCGGAGAACCTGACAGGCGACATTTGGGTTCCGACGATC--GG
15640945 GAGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
1 G-G---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
15641010 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
62 TATCCCTTATCATACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
15641075 TGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTAC
127 TGCCAAGAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
15641140 ACTTCGAGTTTTTAGCTGAATTTTTTTTACATGCCAA-AAAAATTACAAGGATCATGTCTACCAA
192 ACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAA-TACAAGGAT-ATGTCTACCAA
* * * ** * *
15641204 GTGTAGGGCCAAAACTCGTTCTGAAAAAA-TTTTAAAAAAT-CTCAAACCGTAAAAAGATTCAAA
255 GTTTGGGGCCAAAACTCTTTC-GAAAAAATTTTTAAAAAATCCT-AAACCGCGAAAGGTTTCAAA
* *
15641267 AATCATGAAAAATAAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCA
318 AATCATGAAAAAT-AGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAG-GACCA
* *
15641332 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
381 ATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* * * ** * * * ** **
15641397 CACCTGCCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGGCGTAGTGCTAGCCC
446 CACCTACCACCCTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCCC
* * * * * *
15641462 GCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTGAGGCATACGGAGTTCATTCCCAGCCTAA
511 GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAA
15641523 CATTGGACCG
Statistics
Matches: 1198, Mismatches: 76, Indels: 25
0.92 0.06 0.02
Matches are distributed among these distances:
709 387 0.32
710 90 0.08
711 202 0.17
712 2 0.00
713 1 0.00
715 2 0.00
716 241 0.20
717 70 0.06
718 203 0.17
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (709 bp):
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTTATCATACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AAGAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATATGTCTACCAAGTTTGG
GGCCAAAACTCTTTCGAAAAAATTTTTAAAAAATCCTAAACCGCGAAAGGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGACCAATGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCAATCCACAGCTTATGCATCCCGTCTCTATGGCCGATGTAGTGCCCGCCCGCCCGCCCGC
TCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
ACCATCGCCGCAGTGTCACCGGAGAACCTGACAGGCGACATTTGGGTTCCGACGATCGG
Found at i:15642590 original size:26 final size:26
Alignment explanation
Indices: 15642560--15642612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642550 GTTGACTTAG
* *
15642560 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15642586 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15642612 G
1 G
15642613 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15643493 original size:26 final size:26
Alignment explanation
Indices: 15643463--15643515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643453 GTTAACTTAG
*
15643463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15643489 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15643515 G
1 G
15643516 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15644396 original size:26 final size:26
Alignment explanation
Indices: 15644367--15644419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15644357 GTTGACTTAG
15644367 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15644393 GCATACGAAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15644419 G
1 G
15644420 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15645305 original size:26 final size:26
Alignment explanation
Indices: 15645276--15645328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15645266 GTTGACTTAG
15645276 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15645302 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15645328 G
1 G
15645329 TTCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15645421 original size:909 final size:904
Alignment explanation
Indices: 15640779--15646261 Score: 7334
Period size: 904 Copynumber: 6.1 Consensus size: 904
15640769 ATTGGCTTAG
* **
15640779 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
15640844 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGCAGTGTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
** * * * * *
15640909 ACCTGATAGGTGACATTTGGGTTTCGACGATCGGGGGAGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGC
15640974 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15641039 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15641104 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
15641168 ACATGCCAA-AAAAATTACAAGGATCATGTCTACCAAGTGTAGGGCCAAAACTCGTTCTGAAAAA
390 GCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15641232 ATTTTAAAAAATCTCAAACCGTAAAAAGATTCAAAAATCATGAAAAATAAAAAAACGAGTCGTCT
454 ATTTTAAAAAATCT-AAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCT
*
15641297 TGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15641362 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15641427 GCATCTCGTCTCTCTAGCCGGCGTAGTG---CTAGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGT
647 GCATCCCGTCTCTCTGGCCGGCGTAATGCCTCTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
15641489 TGGCTGAGGCATACGGAGTTCATTCCCAGCCTAACATTGGACCGGACTGAGGGTTGC-GACAGCA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAG-CAGCA
* * * * * *
15641553 GGATC-AGCAACACGTAGAGGGGGGCCCGATCGTTCCTCGGCTTGCACATCCCACCCCTCTGGCC
776 GGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
15641617 GGCTGAGCGCCCGTACAGGTCCTTTCGTGGGTTGACTTAGGCATA-TAGAGTTCATTCCCAGTCT
840 GGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCT
15641681 AA
903 AA
* * *
15641683 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15641748 CTCGAGCATGTGCTGGTGCCGCATTCTTCTTCGTCGGGGCACCATCACCGGAGCATC-GCTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATC-GGAG
* * ** *
15641812 AACCTGATCGACGACATTGGGGTTCCGGCGATCAGGGGGATCGGGGGGTGTGCGCACATGATATG
130 AACCTGACCGGCGACATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * *
15641877 CGATGGGTGCTGGTACTTGGCCCTTATATTCACCTCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15641942 ACCCCATTAAGGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15642007 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGATTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*** ** *
15642072 TGCATGCCAACAAAAATATGGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGGAAATA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** ** * * * *
15642137 ATTTTAAAAAATCCGAAACCAAAAAAAGTTTTGAAAATCGTCAAAAATAAAAAAAGAGTCGTCTT
454 ATTTTAAAAAAT-CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15642202 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15642267 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCA
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
15642332 CATCCCATCTCTCTAGCCGGCGTAGTGCC-C--GCCCGCCTGCCCACCCGTTCGTTTCATCGGTT
648 CATCCCGTCTCTCTGGCCGGCGTAATGCCTCTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
15642394 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCCA-CCAGAGGGTTGCAGCAGCAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACTGAGGGTTGCAGCAGCAG
** * * * * *
15642458 GATCGGTAGCACGTAGAGGGTGACCCGACCGATCCGT-GGCATACGCATCCCTCCCCTCTGGTCG
777 GATCGACAGCACGTAGAGGGGGACCCGACCGATCC-TCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
15642522 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
841 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * *
15642586 GCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGACGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
15642651 CTCAGGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTAGG-TCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGC-CGGAGCATCATCGGAG
* * *
15642715 AACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGACATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
*
15642780 C-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 CGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15642844 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15642909 TGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15642974 ATGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
15643039 AATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATCATTAAAAATAGAAAACTTGCCATCT
453 AATTTTAAAAAAT-CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15643104 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15643169 ATTGGCATGTAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
15643234 GCATCCCGTCTCTTTGGCCGGCTTAGTGCC-C--GCCCGCTCACCCGCCTGCGCGTTTTGTCGGT
647 GCATCCCGTCTCTCTGGCCGGCGTAATGCCTCTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** * * *
15643296 TGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATTTGATCAGACTGAGGGTTACAGCAACAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAG
* *** * * * *
15643361 GATCGGCAGCACGTAGAGGGGGACCCGGTTGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGG
777 GATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
15643426 CTGAGCGCCCGCGCGTTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
15643489 GCATACAGAGTTCATTCTCAGTCTAAGATCGGA-CTGAACTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
* * * ** * ** * * *
15643553 GATCGGGCATGTTCTGGTGCCGCATTTTTCTTCAACGTGGCACCATTACCGGAGCATTACCGAAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAG
** * *
15643618 AACCTGACTAGCGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * *
15643682 GATGGTTCCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCTTCAATCCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * **
15643747 CCCCCTTAAAGTGCATTTGACATTTTACAGGTTTGCTACCAGTAGTTATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15643812 GGGACACTTTTTTCAAATGGTTACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15643877 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
15643942 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT-GTGAAAAATAGAAAACGAGTCGGCTTG
455 TTTTAAAAAATCT-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
15644006 CCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGTCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15644071 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * ** *
15644136 ATCTTGTCTCTCTGGCCGACGTAATGCCTGCTAGCCCACCCGCCCGCCTACTCGTTTTGTCGGTT
649 ATCCCGTCTCTCTGGCCGGCGTAATGCCT-CTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
15644201 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCAGTAGCAAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGG
** * * * * *
15644266 ATTTACAGCATGTAGAGGGGGACCCGGCAGATGCTCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
778 ATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
15644331 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *** *
15644393 GCATACGAAGTTCATTTCTAGTCTAAGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
15644458 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
* *
15644523 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGCAGAGTGCGCACATGATGT
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGG-GGCCGGGGG--GTGTGCGCACATGATGT
* *
15644588 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15644653 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15644718 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15644783 GTGCATACCAAAAAAAATACAAGGATCACGTCCACCGAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
15644848 AATTTTAAAAAATCATGGACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAGAACGAGTTGTCT
453 AATTTTAAAAAATC-TAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15644913 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15644978 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * ** *
15645043 GCATCTTGTCTCTCTGGCCGACGTAATGCCTGCTAGCCCACCCGCCCGCCTACTCGTTTTGTCGG
647 GCATCCCGTCTCTCTGGCCGGCGTAATGCCT-CTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
15645108 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGATTGAGGGTTGCAGCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCA
* ** * * *
15645173 AGATTTACAGCATGTAGAGGGGGACCCGACCGATGCTCGGCTTGCGCATCCCGCCCTTCTGGCCG
776 GGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
15645238 ACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** **
15645302 GCATACGGAGTTCTTTCCCAGTCTAAGTTCAGACTGGACCGACAGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
15645367 CTCGGGCATGTGCTGGTGCCGCCTTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * * * *
15645432 ACCTAACCGACGACATTGTGGTTTCGGCGATCAGGGGGCCGGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
15645497 ATGGGTCCTAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15645562 CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTACGGCCAGTAGCCATTAAATTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15645627 GGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* *
15645692 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** *
15645757 TTTCAAAAAAATCCCAAACCGTAAAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGACTT
455 TTT-TAAAAAAT-CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
15645822 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15645887 TTGGCATGTAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCAATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15645952 TATCCTGTCTCTCTGGCCGGCGTAAT---TCTCGCCCGTCCGCCAGCCCGCTCGTTTCGTCGATT
648 CATCCCGTCTCTCTGGCCGGCGTAATGCCTCTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** * * *
15646014 GGCTTATGCGTACGGAGTTCATTCCCCGTCTAAGATCGGTCCAGACCAAGGGTTGCGGTAGTAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGG
* * * * *
15646079 ATCGATAGCATGTCA-AGAGGGACCC-AGCCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCG
778 ATCGACAGCACGT-AGAGGGGGACCCGA-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
15646142 GCTAAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACG--GCTTCCATTCCCAGTCTA
841 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG-TT-CATTCCCAGTCTA
15646205 A
904 A
* * * *
15646206 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACTGAGGTTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
15646262 GGATCGACAG
Statistics
Matches: 4056, Mismatches: 483, Indels: 80
0.88 0.10 0.02
Matches are distributed among these distances:
900 164 0.04
901 293 0.07
902 17 0.00
903 960 0.24
904 1209 0.30
905 102 0.03
906 201 0.05
907 70 0.02
908 489 0.12
909 551 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (904 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAATGCCTCTAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAGCAGGATC
GACAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:15646342 original size:185 final size:185
Alignment explanation
Indices: 15646024--15646430 Score: 541
Period size: 185 Copynumber: 2.2 Consensus size: 185
15646014 GGCTTATGCG
* * * * *
15646024 TACGGAGTTCATTCCCCGTCTAAGATCGGTCCAGACCAAGGGTTGCGGTAGTAGGATCGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCA
** * *
15646089 TGTCAAGAGGGACCCAGCCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGGCTAAGCGCCCG
66 CATCAAGAGGGACCCAGCCGATCCCCGGCTTAAGCATCCCGCCCCTCTAGCCGGCTAAGCGCCCG
* * * *
15646154 CACGCTCATTTCTTGGGTTGACTTAGGCATACGG-CTTCCATTCCCAGTCTAAGCA
131 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGACTT-AATTCCCAGTCCAAACA
* ** *
15646209 TACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACTGAGGTTTGCGGCAGCAGGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCA
* * * *
15646274 CAT-AGAGGGGGACCC-GACCGATCCCCGGCTTAAGCATCCTGCCCCTCTAGCCGGCTGAGCGGC
66 CATCA-AGAGGGACCCAG-CCGATCCCCGGCTTAAGCATCCCGCCCCTCTAGCCGGCTAAGCGCC
* *
15646337 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAACA
129 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGACTTAATTCCCAGTCCAAACA
* *
15646394 TACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
15646431 GAGCGTTGTG
Statistics
Matches: 192, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
184 2 0.01
185 188 0.98
186 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (185 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCA
CATCAAGAGGGACCCAGCCGATCCCCGGCTTAAGCATCCCGCCCCTCTAGCCGGCTAAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGACTTAATTCCCAGTCCAAACA
Found at i:15647291 original size:26 final size:26
Alignment explanation
Indices: 15647261--15647313 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647251 GTTGACTTAG
15647261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15647287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15647313 G
1 G
15647314 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15647946 original size:896 final size:889
Alignment explanation
Indices: 15646206--15648874 Score: 3767
Period size: 896 Copynumber: 3.0 Consensus size: 889
15646196 CCCAGTCTAA
* * ** * *
15646206 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACTGAGGTTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGG-TTGCGATAGTAGGATCGGCA
* * * *
15646271 GCACATAGAGGGGGACCCGACCGATCCCCGGCTTAAGCATCCTGCCCCTCTAGCCGGCTGAGCGG
65 GCACATAGAGGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
15646336 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCCAAACATACGAAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAACATACG-AG
* * * * * *
15646401 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGCGTTGTGGTAGCCCATGCTGGACTCGGGCATG
193 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
15646466 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGG
258 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGG
* * *
15646531 CG-ATGTTGGGGTTCTGGCTATCGGGGAGGCCGGGGGGTGTGCGCATATGATGTGTGATGGGTGC
323 CGCA--TTGGGGTTCTGGCGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
15646595 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTAAA
385 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
* *
15646660 GAGCATTTGAG-TTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATGGGGACAGTTT
450 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * **
15646724 TTTCAAATGGTCACAAAACCTTGTACACTTCTAGTTTTTAGCTGAATGATTTTGTGCATGCCAAC
515 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
15646789 AAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAA
580 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
15646854 TCTTGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
645 TCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
15646919 TCACGTGAAGGCTTAAGGGATGC-TTATATGAATTTACAAGCCATAAAAATGTCATTGGCACACA
710 TCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
*
15646983 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
774 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
15647048 CTCTGGCTGGCATAGTGCCCGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAG
839 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAG
* * *
15647103 GCATACGGAGTTCACTCCCAGTCTAA-ATCGGACC-GAATTGAGGGTTGCGATAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ATTGA-GGTTGCGATAGTAGGATCGGC
* * * * *
15647166 AGCACACAGAGGGGGACCCGACTGA-CCCTCGGCTTGTGCATCCCGCCCCTTTGGCCGGTTGAGC
64 AGCACATAGAGGGGGACCCGACCGATCCC-CGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15647230 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-CATAC-G
*
15647295 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
191 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** *
15647360 TGTGCTGGTGCCCCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACC
256 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
* * *
15647425 GGCAGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
321 GGC-GCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
15647490 TGGTATTTGGCCCTTATATTGGCCCCTTATCCGTCATCAAACCTCGAGAACTCACACCCCGTTAA
385 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAA
*
15647555 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAATGGGGACACTT
449 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
15647620 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
514 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
15647685 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTT-AAAA
579 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
15647749 ATCCTGATCCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
644 ATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
15647814 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCCCGCA
709 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
15647879 GAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCTGTCT
774 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
15647944 CTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCATCTGTTGGCTTAG
839 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * *
15647995 GCGTATGGAGTTCAATCCCGGTCTAAGATCAGACCAGATCGA----G-GAT--T---A-CGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGTTGCGATAGTAGGATCGGCAG
* * * *
15648049 CACATAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATCCCGTCCCTCAGGCCGGCTGAGCGCC
66 CACATAGAGGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
15648114 CGCCCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--C--A--A----
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATACGAGTTC
* *
15648167 A----CA-TC----A---GACCAGACCAAGGGTTGCGGCAGTACATGCTGGGCTCGGGCATGTGC
196 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** * * *
15648220 TGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGATG-
261 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCG--GC
* *
15648284 GCATTGGGGTTCTGGCGATCGGGGGGTCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGT
324 GCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
15648349 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
389 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
*
15648414 CATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
453 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
15648479 CAAAAGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A-TTTTTTGTGCATGCCGACAAA
518 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
15648542 ATTACAAGGATCACATCTACCAAGTTTGGGG-CAAAACTCCTTCCAAAAAAATTTTAAAAAACTC
583 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TC
* * * *
15648606 C-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACATC
647 CTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
15648670 ACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
712 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * *
15648735 ATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTTTCTC
777 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
15648800 TGGCCGGTGTAGTGCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
842 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
*
15648848 GCATACGGAGTTCATTCCCAATCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15648875 CATACAGAGT
Statistics
Matches: 1605, Mismatches: 149, Indels: 80
0.88 0.08 0.04
Matches are distributed among these distances:
852 22 0.01
853 294 0.18
854 4 0.00
855 315 0.20
856 4 0.00
857 1 0.00
858 1 0.00
862 2 0.00
863 2 0.00
867 1 0.00
871 1 0.00
874 1 0.00
876 1 0.00
879 1 0.00
881 103 0.06
882 4 0.00
885 1 0.00
887 3 0.00
888 1 0.00
892 43 0.03
893 11 0.01
894 1 0.00
895 98 0.06
896 493 0.31
897 196 0.12
898 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGTTGCGATAGTAGGATCGGCAG
CACATAGAGGGGGACCCGACCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATACGAGTTC
ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGGCGC
ATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:15648884 original size:26 final size:26
Alignment explanation
Indices: 15648848--15648900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15648838 GTTGGCTTAG
* *
15648848 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
*
15648874 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAATCTAA
15648900 G
1 G
15648901 ATCAGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:15650669 original size:26 final size:26
Alignment explanation
Indices: 15650640--15650692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15650630 GTTGACTTAG
* *
15650640 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
*
15650666 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
15650692 G
1 G
15650693 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:15651576 original size:26 final size:26
Alignment explanation
Indices: 15651540--15651592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15651530 GTTGACTTAG
*
15651540 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15651566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15651592 G
1 G
15651593 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15651717 original size:900 final size:899
Alignment explanation
Indices: 15648824--15656910 Score: 6798
Period size: 900 Copynumber: 8.9 Consensus size: 899
15648814 CCTGCCCACC
* * * *
15648824 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
15648889 TCACAGTCTAAGATCAGG-CCAGACAGAGGGTTACGACAGCACATGCTGGGCTCGAGCATCTGTT
66 TCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
** * * *
15648953 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAG-ACCTTGATCGGCGT
130 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACC-TGACCGGCG-
* * ** *
15649017 G-ATTGGGGTTCCGGAGATCGGGGGGGCCAGGGGGTGTATGCACATGATGTGCGATCGGTGCTGG
193 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
15649081 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
258 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** *
15649146 GCATTTGAGATTTTACAACTTTGCTGCCAGTAACCATTAAAGTGTCTG-AATGGGGACACTTTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
** *
15649210 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAGTTTTTTTGTGCATGCCAAAAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
15649275 AAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * *
15649340 CCGAACCGTAAAAAGTTTCGAAAACCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
518 CTTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
15649405 ACGTGAAGGCTCAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAAAA
583 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
15649470 ATATGAAGATGTGCC-AAATCCACCTACCACCCTATTGATCCACGACTTGCGCATCCTGTCTCTC
648 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
15649534 TGGCCGGCGTAGTGCCCGCCCGCCCGTCCGTTCGCTCGTTTCATCGGCTGGGTTAGGCATACGGA
713 TGGCCGACGTAGTGCCCGCCTGCCCG-CC---CGCTCGTTTTATCGGTTGGCTTAGGCATACGGA
* * * * * *
15649599 GTTCATTCCCAATGTAAGATCAGACCGGACAGAGGGTTACAACAGCAGAATCGGTAGCACGTAGA
774 GTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGA
* * *
15649664 GGGGGACCCGACTGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGTCGACTGAACACCCGCA
839 GGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* * *
15649725 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
15649790 TCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCAAGTGTTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
** * *
15649855 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTAACCGGCAGCA
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * *
15649920 TTGGGGTTCCGACGATCGGAGGGGCC-GGGGG-GTGCGCACATGATGTGCGATGGGTACTGATAC
196 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
15649983 TTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
15650048 TTTGAGATTCTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTATTTTCA
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
15650113 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * *
15650178 TACAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCCTG
456 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTT
* *
15650242 AACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
521 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
15650307 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
586 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
15650372 TGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGG
651 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * **
15650436 TCGATGTAGT----G-CTAGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
716 CCGACGTAGTGCCCGCCT-GCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * * *
15650496 TCCTAGTCTAAAATTGGACCGGATC-GAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAAGGGG
780 TCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGG
* * * * * *
15650560 ACCCGACCGATCCCCGGCTTGC-CTATCCCGCACCTCTGGCCGGCTAAGCGCCCGTA
844 ACCCGACCGATCCCCGACTTGCGC-ATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* * * * *
15650616 AGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCATACGGAGGTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * * * *
15650681 TCCCAGTCTAAGATCAAACCAGACCGATGGTTGCGGCAGCACATTCTGGGCTCGGGAATTTGCTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * ** * *
15650746 GTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCG
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * *
15650811 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATTTGCAATAGGTGCTGGTA
196 TTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
15650876 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
15650941 ATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
15651006 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTACATGCCAAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
15651071 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCT
455 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
*
15651136 TAACCGTAAAAAGTTTCAAAAATCAT-AAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
520 TAACCGTAAAAAGTTTCAAAAATCGTGAAA-AATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
15651200 CATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
15651265 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
15651330 GGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCGGTGGGCTTTGGCATACGGAGTTCA
714 GGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** *
15651395 TTCCCCGTCTAAGATCAGACTGGACAGAGGGTTGCGGTTGTAGGATCGGTAGCACGCAGAGGGGG
779 TTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGG
* *
15651460 ACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
844 ACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* *
15651516 CGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
15651581 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGTTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
**
15651646 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATTGGCGGCA
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
15651711 TTGGGGTTCCGGC-AGTCGAGGGGGCCGGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGT
196 TTGGGGTTCCGGCGA-TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
15651775 ACTTGGCCCTTATATTGGCCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAAA
259 ACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15651840 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
15651904 TCAAATGGTCACAAAAACTTATACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
15651969 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATAC-CGCTTTCGAAAAAATTTTAAAAAAT
453 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAAT
** * *
15652033 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTCGCCATGAAACTT
517 CCTTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
15652098 CACGTGAAGGCTTAAGAGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
15652163 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** * *
15652228 CTGGCCGACGTA------G--TGCCCACCCACTCGTTTTGTCTATTGGCATAGGCATACAGAGTT
712 CTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
15652285 CATTCCCAATCTAAGAAC-GAACCAGACCGAGGGTTGTAGCAGCAAGATCGGTAACATGCAG-GG
777 CATTCCCAGTCTAAGATCAG-ACCGGACAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGG
** * * * * * * *
15652348 GGGACCCGGTCGATCCCTGGCTTACGCATCCCACCCCTTTGGCCGGCTGAGCACCCGTA
841 GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* * * *
15652407 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAAGCATATGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
15652472 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGAT-C-GAAAGCAC--ACA-GAG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA-CATGCTG--GGCTCGGGCATGTG
** ** * *** ** ** * ** * * * * * **
15652532 GGGGACCCG-GTCGATCCCCAACTGGGCATCCCGCCCCTCTG-GC-T-GGCTGAGAGCCTG-CAT
128 TTGGTGCCGTATTTTTCTTCGTCGGGGCA--CCATCAC-CGGAGCATCGTCGGAGAACCTGACCG
* * * *
15652592 GC-TCATTTCGTGGGTTGACTTAGGC-ATGCAGAGTTCATTCACAGTCTAAGATTAGACCGGACT
190 GCGGCA-TT-G-GGGTT--C--CGGCGAT-C-G-G----------G-----G---GGGCCGG---
* * * * * * * ** **
15652655 GAGGGT-TGCGGCAGCA-CATGCTGGGCTCGG-GCAT-GTGC-TGGTGCCGTAT-TT-TTCTTC-
224 G-GGGTGTGC-GCA-CATGATG-TGCGATGGGTGC-TGGTACTTGG-CCCTTATATTGGCCCCCT
* *** * * * * * * *** ** *** ******
15652712 GTCGGGGCAT-GATCGTCGGAGAACCTGAC-CGGCGGCGTTGGGGTTCCGGTGATCGGGGGGCCC
283 ATC-CCTCATCAAACCTC-GAGAA-CTCACAC--C-CCCTTAAAGAGCATTTGA---GATTTTAC
* * * * * * * *
15652775 GGGGGGGTGTGC-GCACA-T-G--ATGTGCAATGGGTGCTGGTACT-TGG-CCCTTATATTGGCC
339 ----AGGTTTGCTGC-CAGTAGCCAT-T--AAAGTGT-CT-GAAATGGGGACACTT-T-TT----
* ** ** * ** * ** *
15652833 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGAATTT-G-AG-ATTTTACCG
388 TCAAAT-GGTCA-CAAA-ATCTTG---T-ACA---C-TT--CGAGTTTTTAGCTGAATTTT----
*** * * * * ** * *
15652895 GTTTGTTGCCAGTAG-CAATTAAAGTGTCTAAAATGGGAACACTTTTTTCAA--AT-GGTCACAA
436 -TTTG-TG-CA-T-GCCAA--AAA--AAATACAA--GGATCACGTCTACCAAGTTTGGGGC-CAA
* **** ** * ** ** ** * * ** * ***
15652956 AA-TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAGGGATC
489 AACTCCT-T-C-CGAAAAAATTTTA---AAAAATCCTT-AAC-CG-TAA-AAAGTTTCAAAAATC
* * ** * ** * * ** * * * ** ** *
15653020 ATTTCTACCAAGTTTGGGACCAAAAC-TCCTT-CCGA-AAAAATT-TCGAAAAATCTTGAACCGT
544 --GT-GA--AAAATAGAAAACGAGTCGT-CTTGCC-ATGAAACTTCACGTGAAGGCTT-AA--GG
* ** * * * * ** * ** * *
15653081 AAAAAGTT-TTTAAAATCGTGA-AA--AATAAAAAACG-ATTCGTCTTGCTATGAAACT-TCACG
599 GACCA-TTGTAT-GAAT--TTACAAGCCATAAAAATGGCATT-GGCACGC-A-GAAA-TATGAAG
* * **** ** *** * * ***** * * *
15653140 -TGAAGGCTTAAGGGACCTTTGTATGAATTTA-CAAGCCATAAAAATG-GCAT--TGGCACT-TA
656 ATG--TGCCTAA---ACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCATCCCGTCTCTCT-
**** * * * * * * **** * ** * * *
15653199 GAAATAAGAAGATG--TGCCTAAACCCACCCAC-CACCCTATCGATCCACGATT-GCACATCCCG
714 GGCCGACGTAG-TGCCCGCCT--GCCCGCCCGCTCGTTTTATCGGT--TGGCTTAG-GCAT-ACG
* * * * * * * * *** *
15653260 TA-TCTC-TGGCCGGCGTAGTGCCCGAACG-CCCG-CCCGCCCGTTCGTTTC-GTCATTGGCTTA
772 GAGT-TCAT-TCC--C--AGT---CTAA-GATCAGACCGGACAGAGGGTTGCAG-CA---GC--A
* *** * * * ***
15653320 GGCATACAGAGT-TCATTC-CA-AGTCTAAGATCAGACTGGA-CAGAAGA-TTGCGGCGGTAGGA
821 GG-AT-C-G-GTAGCA--CGCAGAG--GGGGACCCGAC-CGATC-CCCGACTTGC-GC------A
** * * ** ** * *
15653380 TCGGTAGCACGTAGAGGGGGACCCG-GCCGATCCCCGACTTG
869 TC--CCGCCCCT-CTGGCCGA-CTGAG-C-A--CCCG-C--A
* ** * * * * * ** * * * **** * *
15653421 CGCATCCTACCCCTCTGGCTGGCTGA-GCACCCGCACTCTCCTTTTGTGGGT-TGA-CTTA-GGC
1 CGC-TCGT-TTCGT-GGGTTGACTTAGGCATACGGAGT-T-C-ATTCCCAGTCTAAGCATACGG-
* * ** ** * * * * * * * *
15653482 A-TACAGAGTT--CATTCCCAG-TCTAAGCATACGGA-GTTCATTC-CCAGTCTA-A-GATCGGA
59 AGTTC--A-TTCCCAGTCTAAGATCGGACCAGACCGAGGGT--TGCGGCAG-C-ACATGCT-GGG
** * * *** * * * *
15653539 C-CGAACCGA-GGGTTGCGGCAGCACATGCTAGGCTCGGTCATGCATTGGTGC-CGCATTTTTTT
116 CTCG-GGC-ATGTGTT--GG-TGC-C--G-TA---TTTTTC-TTCGTCGGGGCAC-CA------T
* * * * * * * *
15653601 CGTCGGGGCACCATCGTTGGAGAACCTAACCGACGGCATTGGGGTTCTGGCGATAGGGGGGGCCG
161 C-AC-CGG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-
*
15653666 GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
222 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
15653731 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCA
287 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15653796 GTAACCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
352 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
15653861 GAGTTTTTAACTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTG
417 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
15653926 GGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAATCCTTAATCGTAAAAAGTTTCAAAAATCATA
482 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTTAACCGTAAAAAGTTTCAAAAATCGTG
*
15653991 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
547 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
15654056 ATTTACAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACC
612 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
15654121 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCC
677 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCC
* * * * *
15654186 GCTCGTTTTATCAGTGGGCTTTGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGA
742 GCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGA
* * * * *
15654251 GGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCACATCC
807 GGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * *
15654316 TGCCCCTTTGGCCGACTGAGCGCCCGCA
872 CGCCCCTCTGGCCGACTGAGCACCCGCA
* *
15654344 CGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
15654409 TCCCAGTCTAAGATCGAACCGGTCCGAGGGTTGCGGCAGGACATGCTGGGCTCGGGCATGTGTTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
**
15654474 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATTGGCGGCA
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
*
15654539 TTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
196 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
15654604 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
15654669 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
15654734 AATGGTCACAAAAACTTATACACTTCGATTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* ** *
15654799 TACAAGGATCACGTCTACCAAGTTTGGGGCCAATACAGCTTCCGAAAAAATTTTAAAAAAATCCC
456 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCT
* * *
15654864 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTCGCCATGAAACTTCAC
520 TAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * **
15654929 GTGAAGGCTTAAGAGACCATTGTATGAATTTACAACCCATAAAAATGGAATTGGCACGTTGAAAT
585 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
15654994 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
650 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
15655059 GCCGACGTA------G--TGCCCGCCCACTCGTTTTGTCTGTTGGCATAGGCATACAGAGTTCAT
715 GCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
15655116 TCCCAGTCTAAGATCGGACCAGACTGGGGGTTGCAGCAGCAGGATCGGTAACACGCA-AGGGGGA
780 TCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGA
* * * * * * * * *
15655180 CCCGATCGATCCCTGGCTTACGCATCCCACCCCTTTGGCCGGCTGAGCACTCGTA
845 CCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* * * *
15655235 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAAGCATATGAAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * ** * * *
15655300 TCCCAGTCTAAGATTGAACTGGA-CGAGGGTTGCGACAGCAAATGCT-GGCTC-GGCATATGTTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
** * ** *
15655362 GTGCC--A-CATTCTTC-TCAGGGCA-CAT-TGCGGAGCATCGTCGGAGAA-C-GACCGACGGCA
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
** * * * *
15655419 TTATGGTT-CGACGATC--AGGGGCC-GGGGTTGTGCGCACATGATGTGCAATGGGTGCT-GTAC
196 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
15655479 -TCGCCGCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGATACTCACACCCCCTTAAAGAG
261 TTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCCTTAAAGAG
*
15655542 CATTTGA-ATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
15655605 CAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTGTTTTGTGCATGCC-AACAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* *
15655668 AATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAAAT-
454 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATC
* * * *
15655731 CTTGTACCGTAAAAAGTTTCAAAATTCGTGAAAAATA-AAAACGAATTGTCTTGCCATGAAACTT
518 CTT-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
15655795 CACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
582 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
15655860 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
647 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
15655925 CTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGTATACGG
712 CTGGCCGACGTAGTGCCCG-CC-T--GCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGG
* * ** ** * * * *
15655990 AGTTCATTCCCAATCTAA-AGTTAGACCAAACCA-AGGGTTGTGGCAGCAGGATTGGCAACACGT
773 AGTTCATTCCCAGTCTAAGA-TCAGACCGGA-CAGAGGGTTGCAGCAGCAGGATCGGTAGCACGC
* * * *
15656053 AGAAGGGGACCCGATCGATCCCCGGCTTGCGGATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
836 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
* * *
15656117 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCGTACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
15656182 TCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCT-GGGTATGTGTTG
66 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * ** ** * *
15656246 GTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCAGCA
131 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * * ** * **
15656311 TTGGGGTTCCGGCGATCGACGGGGTCGGGGGGGTGTGCGTACATGATGTAAGATAGGTGCTCATA
196 TTGGGGTTCCGGCGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
15656376 CTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
15656441 ATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
15656506 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * *
15656571 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCTTTCCG-AAAAATTTTTAAAAAT-CT
455 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
* ** * * * *
15656634 TGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAACACGACTCATCTTGCCACGAAACTTCA
520 T-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
15656699 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
584 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
15656764 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTTTC-CT
649 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-
* * *
15656828 TGGCCGACGTAGTGCCCGCCCGCCCGTCGGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
713 TGGCCGACGTAGTGCCCGCCTG-CC--C-GCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGA
**
15656893 GTTCATTCAAAGTCTAAG
774 GTTCATTCCCAGTCTAAG
15656911 CATACGGAGT
Statistics
Matches: 5703, Mismatches: 1092, Indels: 780
0.75 0.14 0.10
Matches are distributed among these distances:
869 160 0.03
870 58 0.01
871 33 0.01
872 28 0.00
873 30 0.01
874 55 0.01
875 64 0.01
876 31 0.01
877 6 0.00
879 8 0.00
880 15 0.00
881 81 0.01
882 149 0.03
883 24 0.00
884 24 0.00
885 6 0.00
886 4 0.00
887 10 0.00
888 42 0.01
889 21 0.00
890 46 0.01
891 600 0.11
892 189 0.03
893 17 0.00
894 266 0.05
895 154 0.03
896 58 0.01
897 27 0.00
898 63 0.01
899 650 0.11
900 1113 0.20
901 373 0.07
902 249 0.04
903 17 0.00
905 1 0.00
909 9 0.00
910 5 0.00
912 8 0.00
913 15 0.00
914 5 0.00
915 9 0.00
916 28 0.00
917 11 0.00
918 8 0.00
919 9 0.00
920 30 0.01
921 29 0.01
922 16 0.00
923 16 0.00
924 3 0.00
925 3 0.00
926 4 0.00
929 6 0.00
930 8 0.00
931 8 0.00
932 1 0.00
933 3 0.00
935 1 0.00
936 3 0.00
939 11 0.00
940 14 0.00
941 5 0.00
942 10 0.00
943 1 0.00
944 6 0.00
945 5 0.00
946 2 0.00
947 5 0.00
948 2 0.00
949 8 0.00
950 15 0.00
951 12 0.00
952 2 0.00
953 18 0.00
954 1 0.00
956 20 0.00
957 18 0.00
958 11 0.00
959 24 0.00
960 23 0.00
961 8 0.00
962 17 0.00
963 23 0.00
964 20 0.00
965 21 0.00
966 17 0.00
967 8 0.00
968 19 0.00
969 17 0.00
970 1 0.00
971 9 0.00
972 15 0.00
974 1 0.00
975 15 0.00
976 2 0.00
977 17 0.00
978 16 0.00
979 9 0.00
980 7 0.00
981 4 0.00
982 3 0.00
983 1 0.00
984 6 0.00
985 1 0.00
986 17 0.00
987 4 0.00
988 5 0.00
989 8 0.00
991 2 0.00
992 5 0.00
993 2 0.00
994 3 0.00
995 5 0.00
996 3 0.00
997 12 0.00
998 8 0.00
999 3 0.00
1003 5 0.00
1004 16 0.00
1005 12 0.00
1006 3 0.00
1007 5 0.00
1008 6 0.00
1009 1 0.00
1011 21 0.00
1012 21 0.00
1013 12 0.00
1014 14 0.00
1015 15 0.00
1016 27 0.00
1017 21 0.00
1018 7 0.00
1019 8 0.00
1021 2 0.00
1022 2 0.00
1023 2 0.00
1024 412 0.07
1025 381 0.07
1026 492 0.09
1027 334 0.06
1028 306 0.05
1029 309 0.05
1030 522 0.09
1031 439 0.08
1032 370 0.06
1033 269 0.05
1034 354 0.06
1035 285 0.05
1036 392 0.07
1037 298 0.05
1038 276 0.05
1039 256 0.04
1040 237 0.04
1041 247 0.04
1042 228 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTT
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACAGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGAC
CCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
Found at i:15652603 original size:184 final size:184
Alignment explanation
Indices: 15652281--15652631 Score: 422
Period size: 184 Copynumber: 1.9 Consensus size: 184
15652271 AGGCATACAG
* * **
15652281 AGTTCATTCCCAATCTAAGAACGAACCAGACCGAGGGTTGTAGCAGCAAGATCGGTAACATGCAG
1 AGTTCATTCCCAATCTAAGAACGAACCAGACCGAGGGTTGCAGCAGCAAGATCGGAAACACACAG
*** * *
15652346 GGGGGACCCGGTCGATCCCTGGCTTACGCATCCCACCCCTTTGGCCGGCTGAGCACCCGTACGCT
66 GGGGGACCCGGTCGATCCCCAACTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCT
* *
15652411 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAAGCATATGA
131 CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCGAAGCATATGA
* * * * * *
15652465 AGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGATC-GAAAGCACAC
1 AGTTCATTCCCAATCTAAGAACGA-ACCAGACCGAGGGTTGCAGCAGCAAGATCGGAAA-CACAC
** * * *
15652528 AGAGGGGGACCCGGTCGATCCCCAAC-TGGGCATCCCGCCCCTCTGGCTGGCTGAG-AGCCTGCA
64 AG-GGGGGACCCGGTCGATCCCCAACTTACGCATCCCACCCCTCTGGCCGGCTGAGCA-CCCGCA
* *
15652591 TGCTCATTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTC
127 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
15652632 ACAGTCTAAG
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
183 5 0.04
184 114 0.82
185 20 0.14
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGAACGAACCAGACCGAGGGTTGCAGCAGCAAGATCGGAAACACACAG
GGGGGACCCGGTCGATCCCCAACTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCGAAGCATATGA
Found at i:15653516 original size:26 final size:26
Alignment explanation
Indices: 15653480--15653532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15653470 GTTGACTTAG
15653480 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15653506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15653532 G
1 G
15653533 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15654398 original size:26 final size:26
Alignment explanation
Indices: 15654368--15654420 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654358 GTTGACTTAG
15654368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15654394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15654420 G
1 G
15654421 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15654800 original size:899 final size:896
Alignment explanation
Indices: 15652622--15656910 Score: 5780
Period size: 890 Copynumber: 4.8 Consensus size: 896
15652612 TAGGCATGCA
* * *
15652622 GAGTTCATTCACAGTCTAAGAT-TAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
15652686 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG---CAT----G-ATCGTCGGAGAACCTGACCG
65 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGAGCATCGTCGGAGAACCTGACCG
* * *
15652743 GCGGCGTTGGGGTTCCGGTGATCG-GGGGGCCCGGGGGGGTGTGCGCACATGATGTGCAATGGGT
130 GCGGCATTGGGGTTCCGGCGATCGAGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
15652807 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
15652872 AAAGAGAATTTGAGATTTTACCGGTTTGTTGCCAGTAGCAATTAAAGTGTCTAAAATGGGAACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
15652937 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * **
15653002 AACAAAAATGCAGGGATCATTTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTCGAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** * * *
15653067 AAATCTTGAACCGTAAAAAGTTTTTAAAATCGTGAAAAATAAAAAACGATTCGTCTTGCTATGAA
453 AAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15653132 ACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
15653197 TAGAAATAAGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCAC-GATTGCACATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
15653261 ATCTCTGGCCGGCGTAGTGCCCGAACGCCCGCCCGCCCGTTCGTTTCGTCA-TTGGCTTAGGCAT
648 CTCTCTGGCCGACGTAGTG-CC---CGCCTGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT
* * ** * * * * * *
15653325 ACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACAGAAGATTGCGGCGGTAGGATCGGTAGCAC
709 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAACAC
* * * * *
15653390 GTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCTACCCCTCTGGCTGGCTGAGCACCCGC
774 GCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGC
* * *
15653455 ACTCTCCTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
839 ACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
15653513 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGTC
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * *
15653578 ATGCATTGGTGCCGCATTTTT-TTCGTCGGGGCACCATC---G--T--T-GGAGAACCTAACCGA
66 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
15653634 CGGCATTGGGGTTCTGGCGATAGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGC
131 CGGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
15653699 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15653764 AGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATAGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
15653829 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTACATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15653894 CAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
15653959 ATCCTT-AATCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
455 AT-CTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15654023 CTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
15654088 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
15654153 TCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTTATCAGTGGGCTTTGGCATACGGA
649 TCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGA
* * * * *
15654218 GTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGA
714 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAACACGCAGA
* * ** * *
15654283 GGGGGACCCGGCCGATCCCCGACTTGCACATCCTGCCCCTTTGGCCGACTGAGCGCCCGCACGCT
779 GGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCT
*
15654348 CCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
844 CCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
15654401 GAGTTCATTCCCAGTCTAAGATCGAACCGGTCCGAGGGTTGCGGCAGGACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15654466 ATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAT
66 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---CGGAGCATCGTCGGAGAACCTGAC
*
15654531 TGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
128 CGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
15654596 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15654661 AAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
15654726 TTTTTTCAAATGGTCACAAAAACTTATACACTTCGATTTTTTAGTTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
15654791 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACAGCTTCCGAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AA
** * *
15654856 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTCGCCATGA
452 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
15654921 AACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAACCCATAAAAATGGAATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** *
15654986 GTTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * *
15655051 TCTCTCTGGCCGACGTA------G--TGCCCGCCCACTCGTTTTGTCTGTTGGCATAGGCATACA
647 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACG
* * * *
15655108 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGGGGGTTGCAGCAGCAGGATCGGTAACACGCA
712 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAACACGCA
* * * * * * * *
15655173 -AGGGGGACCCGATCGATCCCTGGCTTACGCATCCCACCCCTTTGGCCGGCTGAGCACTCGTACG
777 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACG
* * * *
15655237 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAAGCATATG
842 CTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
15655292 AAGTTCATTCCCAGTCTAAGATTGAACTGGA-CGAGGGTTGCGACAGCAAATGCT-GGCTC-GGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
15655354 ATATGTTGGTGCCACA---TTCTTC-TCAGGGCA-CATTGCGGAGCATCGTCGGAGAA-C-GACC
66 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T-CGGAGCATCGTCGGAGAACCTGACC
* ** * * *
15655412 GACGGCATTATGGTT-CGACGATC-A-GGGGCC-GGGGTTGTGCGCACATGATGTGCAATGGGTG
129 GGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
15655473 CT-GTAC-TCGCCGCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGATACTCACACCCCCT
194 CTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCCT
*
15655535 TAAAGAGCATTTGA-ATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15655599 C-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTGTTTTGTGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
15655662 CAAC-AAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTTA
387 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTA
* * * *
15655725 AAAAATCTTGTACCGTAAAAAGTTTCAAAATTCGTGAAAAATA-AAAACGAATTGTCTTGCCATG
451 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15655789 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
15655854 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
581 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15655919 GTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGT
646 GTCTCTCTGGCCGACGTAGTGCCCG-CC-T--GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGC
* * * * * * *
15655984 ATACGGAGTTCATTCCCAATCTAA-AGTTAGACCAAACCAAGGGTTGTGGCAGCAGGATTGGCAA
707 ATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAA
* * * * * *
15656048 CACGTAGAAGGGGACCCGATCGATCCCCGGCTTGCGGATCCCGCCCCTCTGGCCGACTGAGCACC
771 CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCACC
* * *
15656113 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCGTACG
836 CGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
15656174 GAGTTCATTCCCAGTCTAAGATC-AGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCT-GGG
1 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** *
15656237 TATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGA
65 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TCGGAGCATCGTCGGAGAACCTGA
* * * * ** *
15656302 CCGGCAGCATTGGGGTTCCGGCGATCGACGGGGTCGGGGGGGTGTGCGTACATGATGTAAGATAG
127 CCGGCGGCATTGGGGTTCCGGCGATCGA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
** *
15656367 GTGCTCATACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
191 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
15656432 TTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15656497 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
15656562 CCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCTTTCCG-AAAAATTTTT
386 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * * * *
15656626 AAAAATCTTGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAACACGACTCATCTTGCCACG
451 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
15656691 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15656756 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCC
581 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15656821 GTTTC-CTTGGCCGACGTAGTGCCCGCCCGCCCGTCGGCCCGCTTGTTTCATCGGTTGGCTTAGG
646 GTCTCTC-TGGCCGACGTAGTGCCCGCCTG-CC--C-GCCCGCTCGTTTCATCAGTTGGCTTAGG
**
15656885 CATACGGAGTTCATTCAAAGTCTAAG
706 CATACGGAGTTCATTCCCAGTCTAAG
15656911 CATACGGAGT
Statistics
Matches: 3007, Mismatches: 317, Indels: 136
0.87 0.09 0.04
Matches are distributed among these distances:
869 159 0.05
870 60 0.02
871 32 0.01
872 31 0.01
873 30 0.01
874 55 0.02
875 64 0.02
876 31 0.01
877 6 0.00
878 1 0.00
879 8 0.00
880 15 0.00
881 83 0.03
882 148 0.05
883 23 0.01
884 27 0.01
885 6 0.00
887 28 0.01
888 278 0.09
889 23 0.01
890 512 0.17
891 245 0.08
892 104 0.03
893 11 0.00
894 3 0.00
895 1 0.00
896 4 0.00
897 28 0.01
898 63 0.02
899 326 0.11
900 267 0.09
901 77 0.03
902 243 0.08
903 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAACACGCAGAGG
GGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCC
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
Found at i:15656180 original size:26 final size:26
Alignment explanation
Indices: 15656144--15656193 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15656134 GACTTAGGCA
15656144 TACGGAATTCATTCCCAGTCTAAGCG
1 TACGGAATTCATTCCCAGTCTAAGCG
*
15656170 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAATTCATTCCCAGTCTAAG
15656194 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAATTCATTCCCAGTCTAAGCG
Found at i:15658520 original size:26 final size:26
Alignment explanation
Indices: 15658490--15658540 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658480 GTTGGCTTAG
15658490 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15658516 GCATACGGAGTTCATTCCCATTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
15658541 GGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15659430 original size:26 final size:26
Alignment explanation
Indices: 15659394--15659446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15659384 GTTGACTTAG
*
15659394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15659420 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15659446 G
1 G
15659447 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15660279 original size:26 final size:26
Alignment explanation
Indices: 15660242--15660294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15660232 GTTGACTTAG
*
15660242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15660268 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15660294 G
1 G
15660295 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15661558 original size:867 final size:859
Alignment explanation
Indices: 15658656--15661799 Score: 3809
Period size: 867 Copynumber: 3.6 Consensus size: 859
15658646 ACCTGATCGG
** * * *
15658656 CGGCATT-GGTGTTCCGATGATCGGGGGGCCGGGGGTGTTCGTACATGATGTGCAATGGGGGCTG
1 CGGCATTAGG-GTTCCGGGGATCGGGGGGCCGGGGGTGTTCGCACATGATGTGCGATGGGTGCTG
* * *
15658720 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAA
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAG
* *
15658785 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAAGGGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
15658850 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCTAGCCAAAA
195 TTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAA
* * ** *
15658915 AAA-TGCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAATAAATTTTAAAAAAT
260 AAAGTACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
15658979 -CTCGAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATAAAAAATAAGTCGTCTTGCCATGAAAC
325 CCT-GAACCGCAAAAAGTTTTGAAAAATCATGAAAAAT-AAAAATAAGTCGTATTGCCATCAAAC
* * *
15659042 TTCACGTGAAGGTTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCA
388 TTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
15659107 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCT
* * * *
15659172 CTCTGGTCGGCATATTGTCCGCCCGCCCGCTCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGC
517 CTCTGGCCGGCGTAGTG-CCG-CCGCCCGCCCGCCCG--T-C-CATTTCGTCGGTTGGCTTAGGC
* * * * * **
15659237 ATACGCAGTTCATTCCCAAG-CTAAGATCAAACCAG-ATCGAGGGTTACGGAAGCAAGATCGGTA
576 ATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGAAT-GAGGGTTGC-GAAGCAGGATTTGTA
* * *
15659300 -AATCGCAAAGGGGGACCCGATCGATCCCC-GACTTGCGCGTCCCGCCCCTCTGGCCGACTGAGC
638 GCA-CGCAGAGGGGGACCCGATCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCG-CTGAGC
* * *
15659363 TCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAG--CATA
700 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAGATCACA
* ** * * * * * ** * * * ** *
15659425 TGGAGTTC-A---TTCCCA-ATCTA-A-GATCGGAC-CGAAC-CGAG-GGTTACAACGCA-CATG
765 T-CAAATCGAGGGTTACGACAGC-ACATG-TTGGGCTCGGGCATGTGTGG-TGC--CGCATTTTT
** * *
15659479 CTGGGCTCAGGGCACCATCGTCGGAGAACCTGACCGA
824 CTTCGC-CGGGGCACCATCGTCGGAGAACCTAACCGA
* * ** *
15659516 CGGCATTGGGGTTCCGGGGATCGGGGGGGCCGGGGGGGGTTCGCACATGATGTTAGATGGGAGCT
1 CGGCATTAGGGTTCCGGGGATC-GGGGGGCC-GGGGGTGTTCGCACATGATGTGCGATGGGTGCT
15659581 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTC-A
64 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TCAA
*
15659645 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
128 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
15659710 TTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
193 TTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
* * * *
15659775 AAAAAGTACAAGGATCATGTGTACCATGTTTGGGGATAAAACTCCTTCTGGAAAAAA-TTT-AAA
258 AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTC-CGAAAAAATTTTAAAA
15659838 AATCCTGAACCGCCAAAAAGTTTTGAAAAATCATGAAAAATAAAAATCAAGTCGTATTGCCATCA
322 AATCCTGAACCG-CAAAAAGTTTTGAAAAATCATGAAAAATAAAAAT-AAGTCGTATTGCCATCA
*
15659903 AACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCAT
385 AACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
15659968 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
450 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGCGCATCCCG
*
15660033 TCTCTCTGGCCGGCGTAGT------TCCCGCCCG--C-T-CATTTCGTCGGTTGGCTTAGGCATA
514 TCTCTCTGGCCGGCGTAGTGCCGCCGCCCGCCCGCCCGTCCATTTCGTCGGTTGGCTTAGGCATA
* ** ** * * *
15660088 CGGAGTTCATTCCCAGTCAAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGA-TTGACAGCAC
579 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTG-CGAAGCAGGATTTG-TAGCAC
* * * * *
15660152 ACAGAGGGGGACCCCG-TCGATCCCCAACTTGTGCAACCCGCCCCTCTGGCCGGCTGAGCGCCCG
642 GCAGAGGGGGA-CCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCACCCG
*
15660216 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
705 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A--A-A-G-A--TC
*
15660281 ATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
762 A----CA-TC-AA-AT-----C-GA--G-G-GTTACGACAGCACATGTTGGGCTCGGGCATGTG-
** * ** *
15660346 TGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTAATTGG
809 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTAACCGA
* *
15660397 TGGCATTAGGGTTCCGGGGATC----GG--GGGGGTGTTCGCAAATGATGTGCGATGGGTGCTGG
1 CGGCATTAGGGTTCCGGGGATCGGGGGGCCGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGG
*
15660456 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
66 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGA
*
15660521 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
131 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
15660586 TCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
196 TCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAA
* * * *
15660651 AAGTACAAGGATCATGTGTACCATGTTTGGGGATAAAACTCCTTCTGAAAAAATTTTAAAAAATC
261 AAGTACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATC
15660716 CTGAACCGCAAAAAG-TTTGAAAAATCATGAAAAATAAAAATCAAGTCGTATTGCCATCAAACTT
326 CTGAACCGCAAAAAGTTTTGAAAAATCATGAAAAATAAAAAT-AAGTCGTATTGCCATCAAACTT
*
15660780 CACGTGAAGGGTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGCAGA
390 CACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
15660845 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCT
* * * * *
15660910 CTGACCGGGGTAGTGCCCGCCAGCCCGCCCGCCCGTCCGTTTCATCGATTGGCTTAGGCATACGG
519 CTGGCCGGCGTAGTG-CCGCC-GCCCGCCCGCCCGTCCATTTCGTCGGTTGGCTTAGGCATACGG
* **
15660975 AGTTCGTTCCCAGTCTAAGATCAGAGTGGAATGAGGGTTGCGATAGCAGGATTTGTAGCACGCAG
582 AGTTCATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGA-AGCAGGATTTGTAGCACGCAG
* * * * *
15661040 AGGGGGACCCGAGCAATCCCCAGCTTGCGCATCTCGCCCCTCTAGCATGCTGAGCACCCGCACGC
646 AGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGC-CGCTGAGCACCCGCACGC
* * * *
15661105 TCGTTTCGTGGGTTGACTTAGTCATACAGAGTTCATTCCGAGTCTAAAGATCAGATCAAATCGAG
710 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAGATCACATCAAATCGAG
* * *
15661170 GGTTACGGCAGCACATGTTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACA
775 GGTTACGACAGCACATGTTGGGCTCGGGCATGTG-TGGTGCCGCATTTTTCTTCGCCGGGGCACC
15661235 ATCGTCGGAGAACCTAACCGA
839 ATCGTCGGAGAACCTAACCGA
* * * * *
15661256 CAGCATTAGGATTCTGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 CGGCATTAGGGTTCCGGGGATC-GGGGGGCC-GGGGGTGTTCGCACATGATGTGCGATGGGTGCT
*
15661321 GGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAA
64 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAA
* *
15661386 GTGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
15661451 TTTCAAATGGTCATAAAATGTTATACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCAAGCCAAC
194 TTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA-
* * *
15661516 AAAAA-TACAAGGATCACGTCTACCAAGTTT-CGGACAAAAACTCCTTCCGAAAAAATTTAAAAA
258 AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGA-TAAAACTCCTTCCGAAAAAATTTTAAAA
** * * * * * *
15661579 AATCCCAAACCGCAAAACG-TTT-CAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATTAA
322 AATCCTGAACCGCAAAAAGTTTTGAAAAATCATGAAAAATA-AAAATAAGTCGTATTGCCATCAA
* * * *
15661642 ACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAAAGGCACTGGCA--
386 ACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
15661705 CAGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCTACGACTTGCGCATCCC
451 CAG--AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTGCGCATCCC
* * *
15661770 -TCT-TTTGGCAGGCGTAGTGCCGTCGCCCGC
513 GTCTCTCTGGCCGGCGTAGTGCCGCCGCCCGC
15661800 GACGCCGCCT
Statistics
Matches: 1999, Mismatches: 192, Indels: 184
0.84 0.08 0.08
Matches are distributed among these distances:
847 3 0.00
848 161 0.08
849 6 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 2 0.00
856 7 0.00
859 93 0.05
860 18 0.01
861 11 0.01
862 232 0.12
863 66 0.03
864 194 0.10
865 5 0.00
866 147 0.07
867 285 0.14
868 5 0.00
869 2 0.00
870 3 0.00
871 2 0.00
872 199 0.10
873 277 0.14
874 15 0.01
876 5 0.00
878 1 0.00
879 6 0.00
880 15 0.01
881 52 0.03
882 7 0.00
883 9 0.00
884 165 0.08
885 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (859 bp):
CGGCATTAGGGTTCCGGGGATCGGGGGGCCGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAA
AAGTACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CTGAACCGCAAAAAGTTTTGAAAAATCATGAAAAATAAAAATAAGTCGTATTGCCATCAAACTTC
ACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCGCCGCCCGCCCGCCCGTCCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGAATGAGGGTTGCGAAGCAGGATTTGTAGCACGCAGAGGGG
GACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCACCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAGATCACATCAAATCGAGGGTTAC
GACAGCACATGTTGGGCTCGGGCATGTGTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
GAGAACCTAACCGA
Found at i:15662753 original size:26 final size:26
Alignment explanation
Indices: 15662723--15662775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15662713 GTTGACTTAG
15662723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15662749 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15662775 G
1 G
15662776 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15663611 original size:26 final size:26
Alignment explanation
Indices: 15663575--15663627 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15663565 GTTGACTTAG
15663575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15663601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15663627 G
1 G
15663628 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15665355 original size:26 final size:26
Alignment explanation
Indices: 15665326--15665378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15665316 GTTGACTTAG
* *
15665326 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15665352 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15665378 G
1 G
15665379 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15667114 original size:26 final size:26
Alignment explanation
Indices: 15667085--15667134 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15667075 GTTGACTTAG
* * *
15667085 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTACATTCCCAGTCTAA
15667111 GCATACGGACTACATTCCCAGTCT
1 GCATACGGACTACATTCCCAGTCT
15667135 GAGATCGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGACTACATTCCCAGTCTAA
Found at i:15668024 original size:26 final size:26
Alignment explanation
Indices: 15667985--15668037 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667975 GTTGACTTAG
15667985 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
15668011 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15668037 G
1 G
15668038 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15668924 original size:26 final size:26
Alignment explanation
Indices: 15668885--15668937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15668875 GTTGACTTAG
15668885 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
15668911 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15668937 G
1 G
15668938 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15669501 original size:900 final size:899
Alignment explanation
Indices: 15662876--15664561 Score: 2181
Period size: 891 Copynumber: 1.9 Consensus size: 899
15662866 TCGGGGGGCT
** * * *
15662876 CGCACATGATGTTAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
15662941 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15663006 AAGTGTTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * **
15663071 TTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTGTACCATGTTTGGGGATAAAA
196 CTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
15663135 CTCC-TCCTAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTGAAAAATCATGAAAAATA-
260 CTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
15663198 AAAATCAAGTCGTGTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCA
324 AAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
15663263 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
388 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
15663328 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCTTCCCGCCCGCTCGCC
453 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG--C-C-C-CC
* ** *
15663393 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATTGGACCGGACTG
509 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * ** * *
15663458 AGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGGGACCCCGTC-ATCCCCAACTTGTGCAAC
574 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
*
15663522 CCGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
639 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
15663587 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGTGTTACGA
704 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGG
* * * *
15663652 CAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
769 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * ** *
15663717 AG-AAC-CT----AA--TTA--G-CGGCATTAGGGTTCCGGGGAT--AGGGGGCC-GGGGGGTGT
834 AGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
*
15663768 T
899 G
*
15663769 CGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
15663834 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
66 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15663899 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAAGACTTCGAGTTTTTAG
131 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
15663964 CTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
196 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* ** * * *
15664029 TCCTTTCGAAAAAATTTT--AAAATCCTAAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGTA
261 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
15664092 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGC
326 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15664157 CATAAAAATGGCGTTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
391 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
15664222 TCCACAGCTTGCACATCCCGTCTCTCTGGTCGGCATATTGCCCGCCCGCTCGCTCGCCCGCCTGC
456 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CG--C-CCC-CC-GC
* * *
15664287 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CTAAGATCAAACCAGATCGAG
512 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAG
** * * * * * * * *
15664351 GGTTATGGAAGCAAGATCAGCAACTCGCAAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCC
576 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * * *
15664416 GCCCCTCTGGCCGACTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCA
641 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
15664481 TTCCCAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACA
706 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCA
15664546 GCACATGCTGGGCTCG
771 GCACATGCTGGGCTCG
15664562 GGGCACCATC
Statistics
Matches: 707, Mismatches: 77, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
889 2 0.00
890 4 0.01
891 289 0.41
892 156 0.22
893 249 0.35
894 7 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
Found at i:15670571 original size:892 final size:879
Alignment explanation
Indices: 15666393--15678801 Score: 8333
Period size: 900 Copynumber: 13.9 Consensus size: 879
15666383 GTTCGCACAC
* * * * *
15666393 TGATGTGCACATGGGGGCTTGGTACTTGGCCTTTATATTGGCCCCCGTAT-CCTCATCCACGACC
1 TGATGTG-AGATGGGAGC-TGGTACTTGGCCCTTATATTGG-CCCCTTATCCCTCATCAAC--CC
* * * *
15666457 TCGA-AACTCACACCCCCTTTAAAAAGCATATGAGATTTTACTGGTTTGCTGCCAGTAGCGCATT
61 TCAAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATT
* * *
15666521 -AA--GTCGGAAAAGGG-ACACTTTTTTCAAATGGTCACAAAAATCTTGTTACACTTCGAGTTTT
124 AAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCAC-AAAATCTTG-AACACTTCGAGTTTT
* * * *
15666582 ATAGCTTAAATTTTTTGTGCTA--CC-AAAAAA-TGCAAGGATCACATC-ACCAAGTTT-GGGC-
187 -TAGCTGAATTTTTTTGTGC-ACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCA
* * **
15666640 -AAAACTCCTTCCGAATAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTTGAAAATCATGA
250 TAAAACTCCTTCCG-A-AAAAATTTT--AAAATCCT-AAACCCCAAAAAGTTTCAAAAATCATGA
* * *
15666703 AAAATAGAAAAT--AGTCGTCTTGCCATGACACTTCACGTGAAGGCATAAGGGACCATTGTATGA
310 AAAATA-AAAATCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * * * *
15666766 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCATCTACC
374 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACC
* * * * *
15666831 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-G--CCGCCCACCTAC
439 ACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCG-CC-GCT-C
* * * * * * * *
15666893 CCGCCCGTCTACTCGTTTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCC-AGTGTAAGATCG
501 GCTCCCG-C-CCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGCG-AAGATCA
* * * * ** * * ** * * * * **
15666957 GACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACATGCAGAGGGGGACCCGGTCGATCCTCGG
563 AACCAGATCGAGGGTTATGGAAGCAAGATCAACAACACGCAAAGGGGGACCC-GTCCATCCCCAA
* ** * * * * * *
15667022 CTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTACGTGAGTTGACTTAGGC
627 CTTGCGCAACCCGCCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * *
15667087 ATACGGAGTTCATTCCTAGTCTAAGCATACGGACTACATTCCCAGTCTGAGATCGGATCGGACCG
692 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCG
** * *
15667152 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAA
757 AGGGTTACGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG--
* ** * * * *
15667217 CCATAGCCGAAGCATCGTCAGAGAACCTGACCGA-CAGCATTGGGGTTCCGGCGATCGGGGGGGC
820 -C--A--C----CATCGTCGGAGAACC-GAATGAGCGGCATTAGGGTTCCGGGGAT--AGGGGG-
*
15667281 CGGGGTGGTGTGCGCACA
872 C---------T-CGCAAA
* * * * * * * **
15667299 TGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTAGCCCCCTATCCATCATCAAACCTTGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
*
15667364 AACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
15667429 CTAAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAAT
131 CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAT
* * *
15667494 TTTTTTGTGCACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTT
196 TTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCCTT
* ** ** ** *
15667558 CCGAAAAAAGTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAT-G
261 CCGAAAAAA-TTT-TAAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAATCA
* * * *
15667622 AGTCGTCTTGTCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
323 AGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
15667687 AAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCAAAAACCCACCTACCACCCTATCGATCCA
388 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA
** * * *
15667752 TGGCTTGCGCATCCCGAT-TCTCTGG-CAAGCGA-AGT-G-CCCGCCCGC-C-CACCCG--CTCG
453 CAGCTTGCACATCCCG-TCTCTCTGGCCGA-C-ATAGTCGTCCCG-CCGCTCGCTCCCGCCCTCG
* * * ** * *
15667808 TTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGT
514 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAGGGT
*** * * *** * * * * * * * * *
15667872 TGCAGTAGCAAGATCAGCTGTAGGCAGAGAGGGACTCGGTCGATCCCCAGCTTACGCATCTCGCC
578 TATGGAAGCAAGATCAACAACACGCAAAGGGGGAC-CCGTCCATCCCCAACTTGCGCAACCCGCC
** * * * *
15667937 CC-ACTGGCCGGTTGAGCACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATT
642 CCTA-TGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* *
15668001 CCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGAGTTACGACAGC
706 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGC
* * * * * **
15668066 ACACGCTAGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTTTCATCGGGAAACCATCGTCGGAGC
771 ACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAG-
* * * * * *
15668131 ATCGCTGGAGAACCTAACCGATGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCG
834 AAC-C----GAA--TGA--G-CGGCATTAGGGTTCCGGGGAT--AGGGGG-C---------T-CG
*
15668196 CACA
876 CAAA
* * * * * *
15668200 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACGTCGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
*
15668265 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
15668330 CTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTGGCTG-AT
131 CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAT
* *
15668394 TTTTTTATGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAAA-TCC
196 TTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGG-CATAAAACTCC
* ** *
15668456 TT-CGAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAGTAGAAAA
259 TTCCG-AAAAAATTTT--AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAA
* *
15668520 -CGAGTTGTCTTGCCA-CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
320 TCAAGTCGTCTTGCCATC-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15668583 CATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCAAAAACCCACCTACCACCCTATCGA
384 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
** * * *
15668648 TCCATGGCTTGCGCATCCCGAT-TCTCTGG-CAAGCGA-AGT-G-CCCGCCCGC-C-CACCCG--
449 TCCACAGCTTGCACATCCCG-TCTCTCTGGCCGA-C-ATAGTCGTCCCG-CCGCTCGCTCCCGCC
* * * ** * *
15668704 CTCGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGA
510 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGA
*** * * *** * * * * * * * * *
15668768 GGGTTGCAGTAGCAAGATCAGCTGTAGGCAGAGAGGGACTCGGTCGATCCCCAGCTTACGCATCT
574 GGGTTATGGAAGCAAGATCAACAACACGCAAAGGGGGAC-CCGTCCATCCCCAACTTGCGCAACC
** * * * *
15668833 CGCCCC-ACTGGCCGGTTGAGCACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATT
638 CGCCCCTA-TGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
15668897 CATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGAGTTACGA
702 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGA
* * * * * **
15668962 CAGCACACGCTAGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGAAACCATCGTCGG
767 CAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * * *
15669027 AGCATCGCTGGAGAACCTAACCGATGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGT
832 AG-AAC-C----GAA--TGA--G-CGGCATTAGGGTTCCGGGGAT--AGGGGG-C---------T
*
15669092 GCGCACA
874 -CGCAAA
* * * * * **
15669099 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
*
15669164 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15669229 CTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAA
131 CTGAAATGGGAACACTTTTTTC-AAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAA
* * * * *
15669294 TTTTTTTATGCA-GCCAACAAAAA-TACAAGGATCATGTTTGCCAAGTTTGGGGCCA-AAAA-GC
195 TTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGG-CATAAAACTC
* ** **
15669355 CTTCCGAAAAAACTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
258 CTTCCGAAAAAA-TTT-TAAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAA
* *
15669420 -CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
320 TCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
15669484 CTAAAAATGGCATTGGCACT-CAAAAATATGAAGATGCGCCTAAACCCATCTACCACCTTATCGA
385 ATAAAAATGGCATTGGCA-TGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
* ** * *
15669548 TCCACGGCTTGTGCATCCCGTCTCTCTGGCC-A-GT-GTAGT---G-C-C-CG--CCCG--CTCG
449 TCCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTCG
** ** * * * * *
15669600 TTTCGTCGGTTGGGC-TAGGCATACGGAGTTCATT-CCTGGTATAAGGTCAGACCGGACCAAGGG
514 TTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAGGG
* * * ** * * * * * * ** * *
15669663 TTA-CGACAGTAGGATCGGCAGCAAGCAGAGGGGGACCCGACTGATCCTCGGCTTACGCATCCCG
577 TTATGGA-AGCAAGATCAACAACACGCAAAGGGGGACCCGTC-CATCCCCAACTTGCGCAACCCG
* * ** * * *
15669727 CCCTTCTGGCCGGTTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAC
640 CCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * * *
15669792 TCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAATC-AGACCGAGGGTTGCTG-C
705 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTAC-GAC
* ** *
15669855 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGA
768 AGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * ** *
15669920 GCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
833 G-AAC--C---GAA--TGA--G-CGGCATTAGGGTTCCGGGGAT-AGGGGG-C--------T-CG
*
15669985 CACA
876 CAAA
* * *
15669989 TGAT-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC-TATCCCTCATCAAACCC-CG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCC-CCTTATCCCTCATC-AACCCTCA
*
15670051 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGT
64 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
15670116 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
129 GTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGA
*
15670181 ATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCA-AAAA-TC
194 ATTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTC
** ** *
15670243 CTT-CGAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAGTAGAAA
258 CTTCCG-AAAAAATTTT--AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAA
* *
15670307 A-CGAGTTGTCTTGCCA-CGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
319 ATCAAGTCGTCTTGCCATC-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** *
15670370 CCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
383 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCG
** * * * * * *
15670435 ATCCATGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGT-G-CCCG-C-C-CG-T-CCG--TTC
448 ATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTC
* * * *
15670491 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTACGATCAGACCAGA-CTGAGG
513 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATC-GAGG
* * * * * * * * ** * *
15670554 GTTA-CGACAGCAGGATCGACAGCACGCATAGGAGGACCAGGCCGATCCCCGGCTTGTGCATCCC
576 GTTATGGA-AGCAAGATCAACAACACGCAAAGGGGGACCCGTCC-ATCCCCAACTTGCGCAACCC
* * * * * *
15670618 GCCCCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
639 GCCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * ** **
15670683 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTAGAAGATCGAACC-AGACCGAGGGTTGTGGT
704 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGAC
* * ** **
15670747 AGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCACCGGA
768 AGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * *
15670812 GCAGCACCGGAGAACGTGACCGGCGGCATTGGGGTTCTGCCGATCGGGGGATCGGGGGGTGCGTG
833 G-A--ACC---GAA--TGA---GCGGCATTAGGG-T-T--C---C-GGGGATAGGGGGCT-C--G
*
15670877 CACA
876 CAAA
* * * * * *
15670881 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACGTCGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
*
15670946 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
15671011 CTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTGGCTG-AT
131 CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAT
* * *
15671075 TTTTTTATGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT
196 TTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCCT
** *
15671138 TCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAGAAAA-C
260 TCCGAAAAAATTTT--AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAATC
* * ** *
15671202 GAGTCATCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCAT
322 AAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
15671267 AAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGAT
387 AAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* ** * *** * *
15671330 TCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT-G-CTCG-C-C-CG--CCTG--CTCGT
450 CCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTCGT
* * * * *** *
15671386 TTCGTCGGTTGACTTTGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGATTGGACCGAGGGTT
515 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAGGGTT
** * * *** * * * * ** * * *
15671450 GCGGCAGCAGGATCGGTAACATGCAGAGGGGGACCCTGTCGATCCTCGGCTTACGCATCCTGCCC
579 ATGGAAGCAAGATCAACAACACGCAAAGGGGGACCC-GTCCATCCCCAACTTGCGCAACCCGCCC
* * * *
15671515 CTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
643 CTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
15671580 CAGTCTAAG-AT-C-G-G---------A---T----T-GGACC--A---AGGGTTTCGGCAGCAC
708 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCAC
** * *
15671619 CTGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATC
773 AAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--
*
15671684 ATCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGA-AGGGAGGCT-GCA
835 A-C--CGAA--TGA---GCGGCATTAGGGTT----C---C----GGG--GATAGGG-GGCTCGCA
15671747 CACA
878 -A-A
* * * * * * **
15671751 TGATTTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
* *
15671816 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15671881 CTGAAATAGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCA-TCTTTAGCTGA
131 CTGAAAT-GGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCG-AGTTTTTAGCTGA
* * * * *
15671944 ATTTTTTTATGCATGCCAAAAAAAATATAAGGACCACGTCTACCAAGTTTGGGGCCA-AAAA-TC
194 ATTTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGG-CATAAAACTC
* ** ** **
15672007 ATTCCGAAAAAATTTTAAAAAATCCCT-AACCGTAAAAAGTTTTGAAAATGGTGAAAAATAGAAA
258 CTTCCGAAAAAATTTT--AAAAT-CCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAA
* ** * *
15672071 A-CGAGTCGTCTTATCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGC
319 ATCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * * * *
15672135 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGA
384 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
* ** ** * *
15672200 TCCACGGCTTGCACATCTTGTCTCTCTGGCC-AGTGTAGTTCCAG-CCCGCCCGCCCGTTCACC-
449 TCCACAGCTTGCACATCCCGTCTCTCTGGCCGA-CATAG-T-C-GTCCCG-CCGCTCGCTC-CCG
** * ** * * * * * * *
15672262 ATCTCGTTTCGTTGGTTGGCTTAGGCATACAAAGTTCGTTCCC-AGTCTAATAACAGACTAGATT
508 CCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATC
* * *** * * * * * * *
15672326 GAGGGTTGA-GGGAGCAGGATTGGCAGCACGTAGAGGGGGACCTGGCCGA-CCCCAGGCTTGTGC
572 GAGGGTT-ATGGAAGCAAGATCAACAACACGCAAAGGGGGACCCGTCC-ATCCCCA-ACTTGCGC
* * * * * *
15672389 ATCTCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
634 AACCCGCCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
15672454 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
699 GTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGAACCGAGGGTT
* ** * * * * * * **
15672519 GCGGTAGCACATGCTGGGCTCGAGCATGCGCTGGTGCCACATTTTTCTTCGCCAGGGCAAAATCG
763 ACGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * **
15672584 TCGGAGCATCGTCGAAAAACCTGACCGTCGACATTGGGGTTTCGACGATCGGG-GGGGCCGAGGC
828 TCGGAG-AAC--CG---AA--TGA--G-CGGCATTAGGG-TTC--CG---GGGATAGG--G-GGC
*
15672648 GTGTGCGCACA
873 ---T-CGCAAA
* * * * * * *
15672659 TGATGTGCGATGGGTGATTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAA
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC-AACCCTCAA
*
15672724 -AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTG
65 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
15672788 TCTGAAATAGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTGTAGCTGA
130 TCTGAAAT-GGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGA
* * *
15672852 ATTTTTTTGTGCATGCCAACAAAAA-TATAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTC
194 ATTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTC
* ** ** **
15672915 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAA
258 CTTCCGAAAAAATTTT---AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAA
* ** * *
15672980 A-CGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGC
319 ATCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
15673044 CATAAAAATGGCATTGGCCCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
384 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
** * * * * *** * *
15673109 TCCATGGCTTGCGCATCTCATCTCTCTGGCAGGTGTAGTGCCTGCCCGTCCGC-C-CACCCG--C
449 TCCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGT-CGT-CCCG-CCGCTCGCTCCCGCCC
** * * * * * * ** *
15673170 TTATTTCGTTGCTTGGCTTGGGCATACGAAGTTCGTTCCC-AGTCTAAGATCGGACCAGATCAAG
511 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAG
* * * * * * * * * * * * * *
15673234 TGTTATGGTAGCAGGATCGACAGCATGCAGAGGGGAACCTAGTCGA--CCCAGGGCTTGTGTATC
575 GGTTATGGAAGCAAGATCAACAACACGCAAAGGGGGACC-CGTCCATCCCCA--ACTTGCGCAAC
* * * ** ** * * *
15673297 CCACCCCTCTAGCCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTT
637 CCGCCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * **
15673362 CATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGGGGGTGGCGA
702 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGA
* * * * *
15673427 CAGCACATA-CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCA
767 CAGCACA-AGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * ** *
15673491 GAGCTTCACCGCAGAACCTGACCGTCGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
831 GAG----AAC-C-GAA--TGA--G-CGGCATTAGGGTTCCGGGGAT--AGGGGG-C--------T
*
15673556 GCGCACA
874 -CGCAAA
* * * * *
15673563 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
* *
15673628 AACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
15673693 CTGAAATAGGG-ACACTTTTTTCAAATGATCACAAAATCTT-ATACACTTCGAGTTTTTAGCTGA
131 CTGAAAT-GGGAACACTTTTTTCAAATGGTCACAAAATCTTGA-ACACTTCGAGTTTTTAGCTGA
* * *
15673756 ATTGTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCC
194 ATTTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCC
* * * * * *
15673819 -TACTAAAAAATTTTTAAAAAATCCCAAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAA
259 TTCCGAAAAAA-TTTT--AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAA
* * * * *
15673883 -CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTTTAAATTTACAAGCC
320 TCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * * * *
15673947 ATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGATCTACCACCCTATCGAT
385 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* * * * * * *
15674012 CCACAGCTTGCACATCTCGTATCTTTGGCCGGCGTAGT-G-CTCG-C-C-CG---CC-CTCTCGT
450 CCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTCGT
* * * *** * *
15674068 TCCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCC-AGTCTAAGATTGGACCAGACCAAGGGTT
515 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAGGGTT
* *** * ** * * ** *
15674132 GTGGCAA-CAAGATGGGCAGCACATAGAA-GGGGACTCGACCGATCCCCGGCTTGCGC-A-TCG-
579 ATGG-AAGCAAGATCAACAACACGCA-AAGGGGGACCCGTCC-ATCCCCAACTTGCGCAACCCGC
* * * *
15674192 -CC-A-----G-TTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTATGCATACGGAGTTCATT
641 CCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * **
15674249 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGC
706 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGC
* * * * *
15674314 ACATGCTGGGCTCGGGCATGCGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCA
771 ACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A
* **
15674379 TCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGCCGACCGGGGGGCGTGT
835 --ACC---GAA--TGA--G-CGGCATTAGGGTT----C---C---GGG--GA-TAGGGGGC---T
*
15674444 GCGCACA
874 -CGCAAA
* * * * * **
15674451 TGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
*
15674516 AACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15674581 CTGAAATAGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTTTAGCTGAA
131 CTGAAAT-GGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAA
* * *
15674645 TTTTTTTGTGCATGCCAACAAAAA-TATAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCC
195 TTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCC
* ** ** * ** *
15674708 TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATGGTAAAAAATAGAAAA
259 TTCCGAAAAAATTTT---AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAA
* ** *
15674773 -CGAGTCGTCTTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
320 TCAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
15674837 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
385 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* * * * *** *
15674902 CCACGGCTTGCGCATCTCGTCTCTCTGGCAGGTGTAGT-G-CCTGCC-CATCCGC-CCAC-CCGC
450 CCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGC-T-CGCTCC-CGCC-C
* * * * * * * * ** * *
15674962 TCATTTCATTGCTTGGGTTGGGGATACGAAGTTTGTTCCC-AGTCTAAGATCAGACCAGATCGAG
511 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAG
* * * * * * * * * * * * *
15675026 GGTTACGGTAGCAGGATCGACAGCATGCAGAA-GGGAACCTAGTCGA--CCCAGGGCTTGTGTAT
575 GGTTATGGAAGCAAGATCAACAACACGCA-AAGGGGGACC-CGTCCATCCCCA--ACTTGCGCAA
* * * * * ** * * *
15675088 CCCACCCCTCTAGCCGGCTGAGCGCCCTTACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGT
636 CCCGCCCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * **
15675153 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGGGGGTGGCG
701 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACG
* * * * * * *
15675218 ACAGCACATGCTGGGCTCGTGCTTGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCA
766 ACAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
** *
15675283 GAGCATCACCGGAGAACCTGACCGCCGGCATTAGGGTTCCGACAATAGGGGGCCAGGGGGTGTGC
831 GAG-A--ACC---GAA--TGA--G-CGGCATTAGGGTT-C--C-----GGGGATAGGGGG-CT-C
*
15675348 GCACA
875 GCAAA
* * * * * *
15675353 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
* *
15675418 AACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15675483 CTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTT-ATACACTTCGAGTTTTTAGCTAAA
131 CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGA-ACACTTCGAGTTTTTAGCTGAA
* * ** ** *
15675547 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATATCTAGTAAGTTTGGGGCCA-AAAA-TCT
195 TTTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGG-CATAAAACTCC
** *
15675610 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
259 TTCCGAAAAAATTTT--AAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAAT
* * * *
15675675 -GACTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
321 CAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
15675739 TAAGAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
386 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
* * * * * *
15675804 CACGGCCTGCGCATCCCGTCTCTCTGGTCGGCGTAGT-G-CCCG-C-C-CG--CCCG--CTCGTT
451 CACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTCGTT
* ** * * ** *
15675860 TTGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCCAATCTAAGATCGGA-CAGGA-CTGAGTGTT
516 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGCGAAGATCAAACCA-GATC-GAGGGTT
* * * * * * * * * *
15675923 GTGGCAA-CAGGATCGATAGCACACAGAGGGGGACCCAG-CCGATCCTCATCTTGCGCATCCCGC
579 ATGG-AAGCAAGATCAACAACACGCAAAGGGGGACCC-GTCC-ATCCCCAACTTGCGCAACCCGC
* * * * ** *
15675986 CCCTCTGGCCGGCTGAGCGCCGGCACGCTCGTTTTATGGGTTGATTTAGGCATACGGAGTTCATT
641 CCCTATGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
15676051 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACC-AGACCGAGGGTTGCGGCAG
706 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGACAG
* * * * * * **
15676115 CACATGCTGGGCTCAGGCATGTGCTAGTGCCACATTTTTCTCCGCCGGGGCACCATCACCGGAGC
770 CACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-
* * * * ** * *
15676180 ATCGTCGGAGAACCTGACCGACAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCA
834 AAC--C---GAA--TGA--G-CGGCATTAGGGTTCCGGGGAT--AGGGGG-C-------T-CGCA
15676245 CACA
878 -A-A
* ** * * * *
15676249 TGATGTGTGATCAGTGCTGGTACTTGGCCCTTATAGTGGGCCCC-TATCCCTCATCAAACCTCGA
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATA-TTGGCCCCTTATCCCTCATCAACCCTCAA
* * *
15676313 GAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAAAGTG
65 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
15676378 TCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
130 TCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAA
* * *
15676443 TTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCCACCAAGTTTGGGGC-CAAAACTCC
195 TTTTTTTGTGCACGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCC
* * * ** *
15676506 TTCCGAAAAAATTTTAAGAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA-
259 TTCCGAAAAAATTTT-A-AAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAAAT
* * *
15676570 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCA
321 CAAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
15676635 TAAAAATGGAATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
386 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
* * * * * *
15676700 CACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGT-G-CCCG-C-C-CG--CCCGCCTGCTCA
451 CACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCC--CTCG
* * * * * * * **
15676758 TTTCGTCGGTTGGGTTAGGCATACGAAGTTTATT-CCTAGTCTAAGATCAGA-CTGGGCTGAGGG
514 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATC-GAGGG
* * *** * * * * * ** ** *** *
15676821 -T-TGCGACAGTAGGATTGGCAGCATGTAGAGTGGGACCCGGTCGGTCCCCGGCTTTAACATCCC
577 TTATG-GA-AGCAAGATCAACAACACGCAAAGGGGGACCC-GTCCATCCCCAACTTGCGCAACCC
* * * * * * * * *
15676884 GCCCCTCTGGCCCG-TTGGGCGCCTGTATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
639 GCCCCTATGG-CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
15676948 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGG
703 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGA
* * * * * **
15677012 CAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTCCGTCGGGGCACCATCACCGG
767 CAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * ** * *
15677077 AGCATCGTCGGAGAACCTGACCGACAGTATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGT
832 AG-AAC--C---GAA--TGA--G-CGGCATTAGGGTT----C---CGGGGA---TAGGGGGCT-C
15677142 GCACACA
875 GCA-A-A
* ** * * * * *
15677149 TGATGTGTGATCAGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
* **
15677214 AACTCACACTCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
15677279 TTGAAATGAGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
131 CTGAAATG-GGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAA
* * * * * *
15677343 TTTTTTT-TCCATGCCAAAAAAAATTCAAGGATCACATCTACCAAGTTTGGGGC-CAAAACTCCT
195 TTTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCCT
* * * * ** *
15677406 TCTGAAAAAATTTTAAAAAAT-CTCGAACCGCAGAAAGTTTCAAAAATTGTGAAAAATAAAAAAC
260 TCCGAAAAAATTTT--AAAATCCT-AAACCCCAAAAAGTTTCAAAAATCATGAAAAATAAAAATC
* * * * * * *
15677470 GAGCCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAAGGACCATCGTATGAATTTATAAGCCAT
322 AAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
15677535 AAAAATGGCATTAGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAT
387 AAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* * * * * * *
15677598 CTAC-GACGTGCGCATCCCGTCTCTCTAGCCGGCGTAGT-G-CCCACC-CGTACGCT--CG--CT
450 CCACAG-CTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGC-T-CGCTCCCGCCCT
* * *
15677655 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCAGACCAGATCGAGG
512 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAG-CGAAGATCAAACCAGATCGAGG
** * ** ** * * * ** * *
15677719 GTTGCGGCAA-CAGGATCGGCAGTACGCAGAGGGGGACCCGACCGATCTCCGGCTTACGCATCCC
576 GTTATGG-AAGCAAGATCAACAACACGCAAAGGGGGACCCGTCC-ATCCCCAACTTGCGCAACCC
* * ** * *
15677783 GCCCCTCTAGCC-AGCTGAGCGTCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
639 GCCCCTATGGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * * *
15677847 ATTAACAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGC
703 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGAC
* * ** * *
15677912 AGCACATGCTGGGCTCGGGCTTGTTTTGGTGCAC-C-TTTTTCTTCATC--GG-AGCATCGTCGG
768 AGCACAAGCTGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCGTCGGGGCACCATCGTCGG
** ** * *
15677972 AGAACCTGACCGA-CGGCATTAGGGTTCCGGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACA
832 AGAACC-GAATGAGCGGCATTAGGGTT----C---C---GGGG-ATA-GGGGG-CT-CGCAAA
* * * * * *
15678034 TGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCACCC-TATCCCTCATGAAACCTCGA
1 TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGC-CCCTTATCCCTCATCAACCCTCAA
15678098 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
65 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
15678163 TCTGAAATGAGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
130 TCTGAAATG-GGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGA
* * * * *
15678227 ATTTTGTTTGGGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGC-CAAAACTC
194 ATTTT-TTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTC
* ** *
15678291 CTTCCGAAAAAATTTTAAAAAAT-CTCGAACCTTAAAAA-TTT-GAAAATCATGAAAAATAGAAA
258 CTTCCGAAAAAATTTT--AAAATCCT-AAACCCCAAAAAGTTTCAAAAATCATGAAAAATA-AAA
* *
15678353 A-CGAA-TCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
319 ATC-AAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* ** * * * *
15678416 CCATAAAAATGGCATTGCCACACAGAAACATGAAGATGTACCTAAACCCACCTACCACCCTATCG
383 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCG
* * * * * * *
15678481 ATTCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT-G-CCCGCCCGC-C-CGCCCG--CT
448 ATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCG-CCGCTCGCTCCCGCCCT
* * * * *
15678540 CATTTTC-TTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGG
512 C-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGCGAAGATCAAACCAGATCGAGG
** * * * * * ** * ** ** *
15678604 GTTGCGGTAGTAGGATCGACAGCACATAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCG
576 GTTATGGAAGCAAGATCAACAACACGCAAAGGGGGACCC-GTCCATCCCCAACTTGCGCAACCCG
* * * *
15678669 CCACTCTGGCCGGCTGAGCAACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCA
640 CCCCTATGGCCGACTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
15678734 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGAT
704 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGAC
15678798 AGCA
768 AGCA
15678802 GGATCGACTG
Statistics
Matches: 9986, Mismatches: 1130, Indels: 794
0.84 0.09 0.07
Matches are distributed among these distances:
865 1 0.00
866 1 0.00
867 99 0.01
868 4 0.00
870 183 0.02
871 255 0.03
872 17 0.00
873 3 0.00
875 4 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 3 0.00
881 2 0.00
882 7 0.00
883 351 0.04
884 22 0.00
885 464 0.05
886 131 0.01
887 109 0.01
888 471 0.05
889 218 0.02
890 254 0.03
891 29 0.00
892 689 0.07
893 860 0.09
894 111 0.01
895 29 0.00
896 454 0.05
897 21 0.00
898 117 0.01
899 742 0.07
900 1609 0.16
901 488 0.05
902 508 0.05
903 102 0.01
904 381 0.04
905 234 0.02
906 69 0.01
907 179 0.02
908 268 0.03
909 405 0.04
910 86 0.01
911 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
TGATGTGAGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAACCCTCAAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCATAAAACTCCTT
CCGAAAAAATTTTAAAATCCTAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAAAAATCAAGT
CGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAG
CTTGCACATCCCGTCTCTCTGGCCGACATAGTCGTCCCGCCGCTCGCTCCCGCCCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAAGCGAAGATCAAACCAGATCGAGGGTTATGGAAG
CAAGATCAACAACACGCAAAGGGGGACCCGTCCATCCCCAACTTGCGCAACCCGCCCCTATGGCC
GACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCACAAGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCGAATGAGC
GGCATTAGGGTTCCGGGGATAGGGGGCTCGCAAA
Found at i:15672481 original size:26 final size:27
Alignment explanation
Indices: 15672445--15672498 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
15672435 GTTGACTTAG
15672445 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
*
15672471 GCATATGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
15672498 G
1 G
15672499 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:15673380 original size:26 final size:26
Alignment explanation
Indices: 15673350--15673402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673340 GTTGACTTAG
*
15673350 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15673376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15673402 G
1 G
15673403 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15674269 original size:26 final size:26
Alignment explanation
Indices: 15674233--15674285 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15674223 GTTGACTTAT
15674233 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15674259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15674285 G
1 G
15674286 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15675172 original size:26 final size:26
Alignment explanation
Indices: 15675142--15675194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15675132 GTTGACTTAG
*
15675142 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15675168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15675194 G
1 G
15675195 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15676071 original size:26 final size:26
Alignment explanation
Indices: 15676035--15676086 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676025 GTTGATTTAG
15676035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15676061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15676087 AATCGGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15676965 original size:26 final size:26
Alignment explanation
Indices: 15676935--15676987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676925 GTTGACTTAG
*
15676935 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15676961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15676987 G
1 G
15676988 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15677887 original size:899 final size:900
Alignment explanation
Indices: 15671562--15678795 Score: 9440
Period size: 900 Copynumber: 8.1 Consensus size: 900
15671552 GTTGACTTAT
** * * *
15671562 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTTCGGCAGCACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
15671627 CTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15671692 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGAAGGGAGG-CTGCACACATGATT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG--GGGGGGTGTGCGCACATGATG
* *
15671756 TGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15671821 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15671886 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGCA-TCTTTAGCTGAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTT
* * * * *
15671950 TTATGCATGCCAAAAAAAATATAAGGACCACGTCTACCAAGTTTGGGGCCAAAAATCATTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** **
15672015 AAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
15672080 CTTATCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15672145 GCATTGGCACACAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * *
15672210 GCACATCTTGTCTCTCTGGCCAGTGTAGTTCCAGCCCGCCCGCCCGTTCACCATCTCGTTTCGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAG-T---GCCCGCCCGCCCG--C-CC-GCTCGTTTCGTC
** * * * * ** * *
15672275 GGTTGGCTTAGGCATACAAAGTTCGTTCCCAGTCTAATAACAGACTAGATTGAGGGTTGAGGGAG
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * * *
15672340 CAGGATTGGCAGCACGTAGAGGGGGACCTGGCCGA-CCCCAGGCTTGTGCATCTCGCCCCTCTGG
770 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGG
*
15672404 CCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
834 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15672469 AA
899 AA
* * *
15672471 GCATATGGAGTTCATTTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** * * *
15672536 GCTCGAGCATGCGCTGGTGCCACATTTTTCTTCGCCAGGGCAAAATCGTCGGAGCATCGTCGAAA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
15672601 AACCTGACCGTCGACATTGGGGTTTCGACGATCGGGGGGGCC-GAGGCGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
15672665 GCGATGGGTGATTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15672730 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15672795 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTGTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15672860 GTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
15672925 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTC
455 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** *
15672990 TTAACATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15673055 CATTGGCCCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * ** * *
15673120 CGCATCTCATCTCTCTGGCAGGTGTAGTGCCTGCCCGTCCGCCCACCCGCTTATTTCGTTGCTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * ** *
15673185 GCTTGGGCATACGAAGTTCGTTCCCAGTCTAAGATCGGACCAGATCAAGTGTTATGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * ** * * * * * *
15673250 TCGACAGCATGCAGAGGGGAACCTAGTCGA-CCCAGGGCTTGTGTATCCCACCCCTCTAGCCGGT
775 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
15673314 TGAGTGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15673376 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGGGGGTGGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
15673441 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCTTCACCGCAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15673506 ACCTGACCGTCGACATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
15673570 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15673635 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15673700 AGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15673765 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TACTAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15673828 ATTTTTAAAAAATCCCAAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
456 A-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * **
15673893 TGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTTTAAATTTACAAGCCATAAAAATATC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
15673958 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGATCTACCACCCTATCGATCCACAGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
15674023 ACATCTCGTATCTTTGGCCGGCGTAGT----GCTCGCCCGCCCTCTCGTTCCGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * * *
15674084 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGCAACAAGATGGGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * ** * *
15674149 AGCACATAGAAGGGGACTCGACCGATCCCCGGCTTGCGCA---------TC--GCCAGTTGAGCG
780 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
15674203 CCCGCACGCTCTTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15674259 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15674324 CTCGGGCATGCGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15674389 ACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGCCGACCGGGGGGCGTGTGCGCACATGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGG--GGCCGGGGGG-GTGTGCGCACATGA
* *
15674454 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15674519 TCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15674584 AAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTCTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15674649 TTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** *
15674714 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATGGTAAAAAATAGAAAACGAGTC
452 AAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
**
15674779 GTCTTAACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
15674844 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * *
15674909 TTGCGCATCTCGTCTCTCTGGCAGGTGTAGTGCCTGCCCATCCGCCCACCCGCTCATTTCATTGC
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC--CCGCCCGCCCGCTCGTTTCGTCGG
* * * * ** * * *
15674974 TTGGGTTGGGGATACGAAGTTTGTTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * ** * * * * *
15675039 GGATCGACAGCATGCAGAAGGGAACCTAGTCGA-CCCAGGGCTTGTGTATCCCACCCCTCTAGCC
772 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCC
** * * * *
15675103 GGCTGAGCGCCCTTACGCCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15675168 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGGGGGTGGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
15675233 CTCGTGCTTGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15675298 ACCTGACCGCCGGCATTAGGGTTCCGACAAT--AGGGGGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15675360 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15675425 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15675490 GGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** ** * *
15675555 TGCATGCCAAAAAAAATACAAGGATCATATCTAGTAAGTTTGGGGCCAAAAATCTTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15675620 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGACTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15675685 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
15675750 TTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15675815 CATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * * * **
15675876 GTGTACGGAGTTCATTCCCAATCTAAGATCGGA-CAGGACTGAGTGTTGTGGCAACAGGATCGAT
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * **
15675940 AGCACACAGAGGGGGACCCAGCCGATCCTCATCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
780 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* ** *
15676005 CCGGCACGCTCGTTTTATGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15676061 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15676126 CTCAGGCATGTGCTAGTGCCACATTTTTCTCCGCCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15676191 ACCTGACCGACAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** * *
15676256 TGATCAGTGCTGGTACTTGGCCCTTATAGTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15676321 ACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15676386 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15676451 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** ** *
15676516 ATTTTAAGAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15676581 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGAA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
15676646 TTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15676711 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTTGGGTTAG
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * * * *
15676776 GCATACGAAGTTTATTCCTAGTCTAAGATCAGACTGGGCTGAGGGTTGCGACAGTAGGATTGGCA
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *** * * *
15676841 GCATGTAGAGTGGGACCCGGTCGGTCCCCGGCTTTAACATCCCGCCCCTCTGGCCCGTTGGGCGC
781 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
15676906 CTGTATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
846 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15676961 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15677026 CTCAGGCATGTGCTGGTGCCACATTTTTCTCCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15677091 ACCTGACCGACAGTATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
15677156 TGATCAGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
15677221 ACTCATTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15677286 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15677350 TCCATGCCAAAAAAAATTCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * *
15677415 ATTTTAAAAAATCTCGAACCGCAGAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGCCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
15677480 GCCATGAAACTTCACGTGAAGTCTTAAAGGACCATCGTATGAATTTATAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
15677545 TTAGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTACGACGTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
15677610 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCACCCGTACGCTCGCTCGTTTCGTCGGTTGGCTTAG
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
15677675 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAACAGGATCGGCA
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * * * *
15677740 GTACGCAGAGGGGGACCCGACCGATCTCCGGCTTACGCATCCCGCCCCTCTAGCCAGCTGAGCGT
781 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * **
15677805 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTAACAGTCTAA
846 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15677860 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
15677925 CTCGGGCTTGTTTTGGTG-CACCTTTTTC-T--T--------CAT---CGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15677975 ACCTGACCGACGGCATTAGGGTTCCGGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * *
15678040 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCACCCTATCCCTCATGAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15678105 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15678170 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TT
* *
15678235 TGGGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
15678300 AAATTTTAAAAAATCTCGAACCTTAAAAA-TTT-GAAAATCATGAAAAATAGAAAACGAATCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15678363 TTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15678428 CATTGCCACACAGAAACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTTG
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15678493 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTTC-TTGGTTGGCT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-GTTTCGTCGGTTGGCT
* * * *
15678557 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGTAGTAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* ** * *
15678622 ACAGCACATAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGGCTGAG
778 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
15678687 CAACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 C-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15678746 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
15678796 ATAGCAGGAT
Statistics
Matches: 5557, Mismatches: 715, Indels: 129
0.87 0.11 0.02
Matches are distributed among these distances:
883 202 0.04
884 57 0.01
885 507 0.09
886 110 0.02
887 92 0.02
888 211 0.04
889 48 0.01
890 202 0.04
892 2 0.00
893 305 0.05
894 102 0.02
895 12 0.00
896 460 0.08
897 3 0.00
898 105 0.02
899 513 0.09
900 549 0.10
901 199 0.04
902 459 0.08
903 52 0.01
904 351 0.06
905 185 0.03
906 5 0.00
907 6 0.00
908 261 0.05
909 423 0.08
910 134 0.02
911 1 0.00
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15678756 original size:26 final size:26
Alignment explanation
Indices: 15678720--15678772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15678710 GTTGACTTAG
*
15678720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15678746 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15678772 G
1 G
15678773 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15679828 original size:26 final size:26
Alignment explanation
Indices: 15679792--15679844 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15679782 GTTGACTTAG
15679792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15679818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15679844 G
1 G
15679845 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15680188 original size:26 final size:26
Alignment explanation
Indices: 15680158--15680210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680148 GTTGACTTAG
*
15680158 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15680184 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15680210 G
1 G
15680211 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15682128 original size:877 final size:853
Alignment explanation
Indices: 15680184--15684160 Score: 4269
Period size: 877 Copynumber: 4.5 Consensus size: 853
15680174 CCCAGTCTAA
* * * * *
15680184 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGATACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
15680249 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGTACCATCACCGGAGCATCGCCGGAGA
66 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-AGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
15680314 ACCTGACCAGC-AGCATTGGGGTTTCGGCGATCGGGGAG-CAGGGGGTGTGCGCACATGAAGTGC
130 ACCTGACCGGCGA-CATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15680377 GATGGGTGCTGGTAATTGGCCATTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15680442 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
15680507 GGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15680572 GCATGCCAACAAAAACACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCC-AAAAAA
* * *
15680637 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCCTGAACCGTAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTA
*
15680702 CCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCAT---A-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
15680767 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATACGATCCACGGCTTGCGC
577 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTAT-CGATCCACGGCTTGCGC
* *
15680832 ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCCGTT
641 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCG-CCGCCCGCTCATTTCGTCGGTT
* * *
15680897 GGCTTAGGCATACGGAGCTCATTCCCAGTCTATGATCAGACCGGATAGAGGGTTACGGCAGCATG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTACGGCAGCACG
* * * *
15680962 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGG-CTGAGCGCCCGC
766 CAGAGGGGGACCTGA-CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTC-GAGCACCCGC
* *
15681026 ACGCTCGTTTCGTGGGTTAACTTAG
829 ACGCTCGTTTCATGGGTTGACTTAG
* * * *
15681051 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * * * *
15681116 CTCAGGCATGTGCT-GTGCCGCATTTTTCTTCGTCGGGGCTCCATGACCAGAGCATCGTCGGAGA
66 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-AGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
15681180 ACCTGACCGGCGGCATTGGGGTTCCAGCGATTGGGGGGTCGGGGCGGTGTGCACACATGATGTGC
130 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGC
** *
15681245 GATGGGTGCTGGTACTTGGCCCAAATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15681309 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15681374 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
15681438 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCCTCCAAAAATA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTCCAAAAA-A
* * * * *
15681503 TTTTAAAAAATCCTGAACTGTAAAAAGTTTTGAAAATCATGAAAAGTGGAAAACAAGTCGTCTTA
452 TTTTAAAAAATCCTGAACCGTAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTA
* * * *
15681568 CCAT-TACATGTCAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGC
516 CCATATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
15681632 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTACCGAACCACGACTTGCGCATTC
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGCATCC
*
15681697 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCCGTCCGCCCGTCCGTTCGTTTCGTCGGTT
645 CGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCG-CCGCCCG--C--TCATTTCGTCGGTT
* * * * *
15681762 GACTTGGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT-GAGGGTTGCGGCAGCAG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTT-----A-C-G
* *
15681826 GATCAGTAGCACGCAGAGGGGGACCTGACGTATCCTCGACTTGCGCATCCCACCCCTCTGGCCGG
758 G--C---AGCACGCAGAGGGGGACCTGACG-ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
15681891 TCGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
817 TCGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
15681928 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
15681993 CTTGGGCATGTGTTGGTGTTGCATTGTTCTTCGTCAGGACACCATCGCCGGAGCATCACCGGAGA
66 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGG-CACCATCACCGGAGCATCGCCGGAGA
*
15682058 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
130 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
15682123 ATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15682188 CCCCTTAAAGATCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* ** * ** * *
15682253 GGACACGTTTGCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGAAGATGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * *
15682318 CATGCCAACAAAAATACATGCATCACGTCTACCAAGTTTGTGACCAAAATTGCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C-CTCCAAAAAAT
* ** * *
15682383 TTTAAAAAATCTTGAACCGTAAAAAGTTTAAAAATTTGTGAAAAATAGAAAACGAGCCGTCTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTAC
15682448 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CAT---A-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15682513 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCGCGGCTTGCGCA
578 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGCGCA
* * *
15682578 TCCCGTCTCTCTGGCCGGCGCAGT----GCCCG--C-CCGCCCGCTCGTTTCGTCGATTGGCTTA
642 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGGTTGGCTTA
* * * *
15682636 GG-AGTACGGAGTTCACTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACGCAGAG
707 GGCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTACGGCAGCACGCAGAG
* * * * * * *
15682700 GGTGACCTGGCCGATCCCCGGCTTGCGTATCCCGCCCCTCAGGCCAGTTGAGCACCCGCACGCTC
771 GGGGACCT-GACGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTCGAGCACCCGCACGCTC
* *
15682765 GTTCCATGTGTTGACTTAG
835 GTTTCATGGGTTGACTTAG
* * *
15682784 GCATACGGAGTTCATTCCCAGTATAACCATACGGAGTTCATTCCCAGTATAACCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGC-T-C--AG---A---CCAG----ACC-GA-GG-GTT-
* * *
15682849 ATTCCCAGTCTAAGATCAGATGAGACCAAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGT
48 A----C-GGC--AG--CACAT--G--C--------TGG--G--C-T--T--G----GGCATGTGC
* * * *
15682914 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGATAACCTGACCATG-G
79 TGGTGTCGCATTTTTCTTCGTC-AGGCACCATCACCGGAGCATCGCCGGAGAACCTGACC-GGCG
** * * *
15682978 -CATTGGGGTTCCGATGATCGGGGGGGCCACGTGGCGGTGTGCGCACACGATGTACGATGGGTGC
142 ACATTGGGGTTCCGGCGATC-GGGGGG-C-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
15683042 TGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAA
203 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
15683107 AGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACAGTT
268 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
15683172 TTTTCAAATGGTCACAAAATCTTGTAC-CGCTCGATTTTTTAGCTGAATTTTTTTGTGCAAGCCA
333 TTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
15683236 ACAAAAATTCAAGGATCATGTCTACGAAGTTTTGGGCCAAAAATCCT--------TTTGAAAAAA
397 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCAAAAAATTTTAAAAAA
* * * * ** * * * *
15683293 T--T-----TTAAAAA-TTCAAAGA-C-T----TA-AG-GGACCA-TTGTATGA--A-ACTTCAC
462 TCCTGAACCGTAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATA-TTCAC
* * *
15683338 GTGAAGACTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAAT
526 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
** * * * *
15683403 ATGAAGATGCT-CCTAAACCCATGTACCACCCTATCGATCCAAGGCTTGTGCATCCCGACTCTCA
591 ATGAAGATG-TGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
15683467 GGCTGGCGTCGTGCCCGCCCGCCCGCCGACCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAG
654 GGCCGGCGTAGTGCCCGCCCGCCCGCCG-CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** * * *
15683532 TTCATTCCCAATCTAAGATTAGACTGGACCGAGGGTTACGACAGCACGCAGAGGGGGACCCGGCC
718 TTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTACGGCAGCACGCAGAGGGGGA-CCTGAC
* * * * * * * * * *
15683597 GATCCCCAATTTGTGCATCCCGCCCCTCTGGCTGGTTGAGCACCTGTACACTCGTTTCGTGTGTT
782 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTCGAGCACCCGCACGCTCGTTTCATGGGTT
15683662 GACTTAG
847 GACTTAG
*
15683669 GCATACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGC-T-C--AG---------A--C------C--A---GAC
* * * *
15683734 CGAGGGTTACGGCAGCACATGCTGGG-TTCGAGCATGTGCTGGGGCCACATTTTTCTTCGTCGAG
40 CGAGGGTTACGGCAGCACATGCTGGGCTT-GGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-AG
* * * * * *
15683798 GCACCATCACCGGACCATCGTCGGAGAACCTAACCGGCGGCA-TGGGGTTCTGACGATCGGGGGG
103 GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATC-GGGGG
* * *
15683862 GCCGGGGGGGTGTGCGGACATGATGTACGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCT
167 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
15683927 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCT
231 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
15683992 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
296 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15684057 CTTCGAGTTTTTAGCTG-A-CTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAG
361 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
15684120 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
426 TTTGGGGCCAAAACTCC-TCC-AAAAAATTTTAAAAAATCC
15684161 CGTCTCTCTG
Statistics
Matches: 2653, Mismatches: 311, Indels: 292
0.81 0.10 0.09
Matches are distributed among these distances:
855 54 0.02
856 108 0.04
857 198 0.07
858 5 0.00
859 83 0.03
860 4 0.00
861 154 0.06
862 7 0.00
863 3 0.00
864 1 0.00
865 72 0.03
866 248 0.09
867 183 0.07
868 99 0.04
870 6 0.00
871 2 0.00
872 14 0.01
873 3 0.00
874 2 0.00
876 5 0.00
877 329 0.12
878 192 0.07
879 150 0.06
880 9 0.00
881 8 0.00
882 1 0.00
883 9 0.00
884 144 0.05
885 177 0.07
886 6 0.00
888 2 0.00
889 1 0.00
890 2 0.00
891 2 0.00
893 7 0.00
894 9 0.00
895 5 0.00
896 2 0.00
897 4 0.00
898 1 0.00
899 2 0.00
900 1 0.00
901 11 0.00
902 1 0.00
904 1 0.00
907 17 0.01
908 66 0.02
909 5 0.00
910 4 0.00
911 234 0.09
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (853 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGCACCATCACCGGAGCATCGCCGGAGAA
CCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCAAAAAATTTT
AAAAAATCCTGAACCGTAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATA
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTACGGCAGCACGCAGAGGGGGACCTGA
CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTCGAGCACCCGCACGCTCGTTTCATGGGT
TGACTTAG
Found at i:15682814 original size:26 final size:26
Alignment explanation
Indices: 15682785--15682857 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
15682775 TTGACTTAGG
15682785 CATACGGAGTTCATTCCCAGTATAAC
1 CATACGGAGTTCATTCCCAGTATAAC
15682811 CATACGGAGTTCATTCCCAGTATAAC
1 CATACGGAGTTCATTCCCAGTATAAC
15682837 CATACGGAGTTCATTCCCAGT
1 CATACGGAGTTCATTCCCAGT
15682858 CTAAGATCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAC
Found at i:15683705 original size:26 final size:26
Alignment explanation
Indices: 15683669--15683721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683659 GTTGACTTAG
*
15683669 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15683695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15683721 G
1 G
15683722 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15685711 original size:26 final size:26
Alignment explanation
Indices: 15685675--15685728 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15685665 GGTTGACTTT
15685675 AGCATAAGGAGTCCATTCCCAGTCTA
1 AGCATAAGGAGTCCATTCCCAGTCTA
* *
15685701 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATAAGGAGTCCATTCCCAGTCTA
15685727 AG
1 AG
15685729 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (26 bp):
AGCATAAGGAGTCCATTCCCAGTCTA
Found at i:15687482 original size:26 final size:26
Alignment explanation
Indices: 15687430--15687482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15687420 GTTGACTTAG
* *
15687430 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15687456 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15687482 G
1 G
15687483 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15688753 original size:873 final size:870
Alignment explanation
Indices: 15685008--15689999 Score: 5566
Period size: 895 Copynumber: 5.6 Consensus size: 870
15684998 ATGGTGTGTG
* * * *
15685008 ACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACGCCTTTAAAAAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
15685073 CATTTGAGATGTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * ** *
15685138 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTCATGCATGCGAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
15685203 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCGTTCCAAAAAAATTTTAAAAAATCT
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
15685268 TGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTTCA
261 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
15685333 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCATGCAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
15685398 TATGAAGATGTG-CTAAACCCACCAACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCT
391 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * **
15685462 AGCCAACGTAGTGCCTGTTCGCCCGCCCG-TCCGCTCGTTTCGTCGGTTGTTTTAGGCATAC-AG
456 -GGC--CG--GTG-CAG-T-GCCCGCCCGCT-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-
* * * *
15685525 AGTTCATTCCCAGTCTACGATCAGAGT-GGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGCA
511 AGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGAA
* * * *
15685589 GAGGGGGACCCGGTCGATCCTCAGCTTGCGCATCCCACC-CTTCTAGCCGGCTGAGCGCCCGCAC
575 GAGGGGGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCAC-TCTGGCCGGCTGAGCGCCCGCAC
** * * * *
15685653 GCTTATTTCATGGGTTGACTTTA-GCATAAGGAGTCCATTCCCAGTCTAAGCATACGGAGTTCAT
639 GCTCGTTTCGTGGGTTGACATTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-
15685717 TCCCAGTCTAAGATCAGATTGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
696 ---C---C--AGA-C--------C-GAGGGTTGCGACAGCACATGCTGGGCTCG-GCATGTGCTG
* ** *
15685782 GTGCCACATTTTTTTTCGTCGGGGCA-C--CATC---G---C--CAAAGAACTTGACCGGCGGCA
742 GTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
15685836 TTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
807 TTGGGGTTCCGGCTATCGGGGGGG-CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
15685900 ACTTGGCTCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
15685964 CATTTGAGATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTC
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
15686028 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-ATTTTTGTGCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * **
15686092 AATACAAGGATTATGTATACCCAGTTTGGGGCCTAAACTCCTTTTG-AAAAATTTTAAAAAAAT-
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* * *
15686155 CTCGAACCGCAAAAAGTTTCTAAAATCGTGAAAAGTAGAAAACGAGTCGCCTTGCCATGAAACTT
260 CT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
15686220 CACATGAAGGCTTATGGGACCATTGTATGAATTTACACA-CCATAAAAATGGCATTGGCACATAG
324 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCACGCAG
* * *
15686284 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTT--G-----CG--TA
388 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** *
15686340 TC---CC-GT-C--T--CCG--C-C-CGCTCGTTTCATCATTTGGCTTAGGCATAC-AGAGCTCA
453 TCTGGCCGGTGCAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCA
* * * * * * *
15686391 TTCCCAGTCTCAGATCAGATTGGACTGAGGGTT-CGGCAGTAGGATCGACAGCTC-ATAGAAGAG
517 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGA-AGAGGGG
** * * * * * * *
15686454 GACCTGGTCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCCGTACGCTCGT
581 GACCCAGTCGATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGC-GCCCGCACGCTCGT
*
15686519 TTCGTGTGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGT
645 TTC----G-TG-----GG--T-T-GA---CA-T--TAG-----GCATACGGAGTTCATTCCCAGT
* *
15686584 CTAAGATCGGACCAGAACGAGGGTTGCG-TAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CAG
685 CTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCA-
* ** *
15686647 CATTTCTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
748 CATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
15686712 TTCCGG-TGATCGGGGGGGCCGA-GGGGGTGTGCACACATGATTTGTGAT-GGCGCTGGT
813 TTCCGGCT-ATCGGGGGGG-CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
15686769 ACTTGGACCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
15686834 CATTTGAGATTTTACAGGTTTGCTGCCAATGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
15686899 CAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTGGTGCGTGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
15686964 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-C
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
15687028 TCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTC
261 T-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
15687093 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
325 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
15687158 ATATAAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC
390 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * * *
15687223 AGGCCGGCGTAGTGCCCACCCGCCCGCCCGTTTTGTCGGTTGGCTTAGCCATACGGAGTTCATTC
455 TGGCCGGTGCAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * * * * * * * * *
15687288 CCAGTCAAAGATCGGACCAGACCGAGGGTCATGGTAGCAGGGTCGACAACACGTAGTGGGGGACC
520 CCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGAGGGGGACC
* * * ** * * * * *
15687353 C-GACCGATCTCCAGCTTGCACATCTAGCCCCTCTGGCCGACTTAGTGCCCGCACGCTTGTTTCG
585 CAG-TCGATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
15687417 TGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAATTTAAGCATACGAAGTTCATTCCCAGTCTA
649 TGGGTTGACATTAGGCATACGGAGTTCATTCCC------AG--T-CTAAG---A-T--C-G----
* * *
15687481 AGATCAAACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATT
694 -GA-C---C-AGACCGAGGGTTGCGACAGCACATGCTGGGCT-CGGCATGTGCTGGTGCCACATT
** * * * *
15687546 TTTCTTCACCGGGGCACCATCGTCGGAGAATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCC
752 TTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
15687611 GGCGATC-AGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGT
817 GGCTATCGGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
15687664 ACTTGGCCCTTATATTGGCCCCCTATCCTTCATCTAACCTCAAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
15687729 CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTGAAGTGTCTAAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
15687794 CAAATTGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAAATTTTTTGTGCATGCCAAAAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
15687859 AATTCAAGGATCACATCTACCAAGTTTGGGGCCAAAACAT-CTTTCGAAAAAATTTTAAAAAATC
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATC
*
15687923 CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
260 CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
15687988 ACGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACGCAAAA
325 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
15688053 ATATGAATATGTACCAAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
390 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * **
15688118 TGGTCGGTGCAGTGCCCGCTCGCTCGCTCGTTTCGTTAGTTGGCTTAGGCATACGAAGTTCATTC
455 TGGCCGGTGCAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * *
15688183 CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGCATC-AGTAGCACGAAGAGGGGGAC
520 CCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGAAGAGGGGGAC
* * ** * * *
15688247 CCAGTCAATCCCCTGCTTGCAAATCCCGCCACTCTTGTCGGCTGAGTGCCCGCACGCTCGTTTCG
584 CCAGTCGATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
15688312 TGGGTTGAC-TTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAA
649 TGGGTTGACATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA
*
15688376 CGGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGG
714 CAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGG
*
15688441 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCTATCGGGGGGGTCGGGAGGGGGG
778 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCTATCGGGGGGG-C--GAGGGGGG
*
15688506 TATGCGCACATGATGTGCGATGGGTGCTGGT
840 TGTGCGCACATGATGTGCGATGGGTGCTGGT
*
15688537 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAC
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
15688602 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
15688667 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** * ** * *
15688732 AATACAAGCATCATGTCTACCAAGTTTACGGCCAAAAATGGTTCCGAAAAAATTTCAGAAAATCC
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
15688797 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGCCGTCTCGCCATGAAACTTCA
261 TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
15688862 CGTGAAGGCCTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAATGGCACGTAGAAA
326 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
15688927 TATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
391 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
15688992 GGCCGGCGTAGTGCACGCCAGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
456 GG-C--CG--GT----G-CAG--TGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
15689057 GGAGTTTATTCCCAATCTAAGATCCA-ATCGGACTGAGGGTTACAGTAGCAGGATTGACAGCATG
509 GAAGTTCATTCCCAGTCTAAGAT-CAGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * *
15689121 CAGAGGTGGACCCAG-CTGATCCCCAACTTGCGCATCCCGCCACTCTGGTCGGCTGAGCGCCCGC
573 AAGAGGGGGACCCAGTC-GATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCCGC
* * * *
15689185 ACTCTCATTTCCTAGGTTAACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
637 ACGCTCGTTT-C---G------T-GG-GT-T-GA---CATT---AG-----GCATACGGAGTTCA
* * * * *
15689250 TTCCCAATCTAAGATCGAACCAGACCGATGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCT
677 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC-GGCATGTGCT
* * * * *
15689315 GGTGCCGCATTTTTCTTCGTCGGGGCACCAT-AGCCGAGCATCGTTGGAGAACCTGACCGACGGC
741 GGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * * * *
15689379 ATTGGGGTT-CTGATGATC-GGGGGGC-CGGGGGGTGTGCGCACATGATGTACGATGGGAGCTGA
806 ATTGGGGTTCCGGCT-ATCGGGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
15689441 T
870 T
* *
15689442 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAG
1 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
15689507 CTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTCTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
15689572 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
15689637 AATAAAAGGATGATGTCTACCAAGTTTGGTGCCAAAACTCCTTTC-AAAAAATTTTTAAAAAATC
196 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATC
* * ** *
15689701 CCGAACAGCAAAAAGTTTCAAAAATTTTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTC
260 CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
15689766 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAA
325 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
15689831 ATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTC
390 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * * *
15689896 TGGCCGGCGCAGTTCCCGACCGCCCGCTCATTTCATCGGTTGGCTTACGCATACGGATTTCATTC
455 TGGCCGGTGCAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
* *
15689961 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
520 CCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCA
15690000 CATGCTGGGC
Statistics
Matches: 3508, Mismatches: 426, Indels: 331
0.82 0.10 0.08
Matches are distributed among these distances:
858 2 0.00
859 114 0.03
860 85 0.02
861 1 0.00
862 4 0.00
864 3 0.00
865 3 0.00
867 1 0.00
868 19 0.01
869 168 0.05
870 135 0.04
871 56 0.02
872 233 0.07
873 469 0.13
874 7 0.00
875 3 0.00
876 3 0.00
877 7 0.00
878 3 0.00
879 3 0.00
880 6 0.00
881 8 0.00
882 4 0.00
883 8 0.00
884 7 0.00
885 150 0.04
886 31 0.01
887 1 0.00
888 12 0.00
889 192 0.05
890 91 0.03
891 54 0.02
892 52 0.01
893 79 0.02
894 110 0.03
895 759 0.22
896 10 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 1 0.00
902 3 0.00
903 2 0.00
904 7 0.00
905 447 0.13
906 2 0.00
908 1 0.00
909 9 0.00
910 40 0.01
911 99 0.03
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (870 bp):
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
TGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGTGCAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
CAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGAAGAGGGGGACCC
AGTCGATCCCCAGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGC
ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCTATCGGGGGGGCGAGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGT
Found at i:15689246 original size:26 final size:26
Alignment explanation
Indices: 15689210--15689262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15689200 GTTAACTTAG
*
15689210 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
15689236 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
15689262 G
1 G
15689263 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:15690829 original size:26 final size:26
Alignment explanation
Indices: 15690799--15690851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15690789 GTTGACTTAG
15690799 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
15690825 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15690851 G
1 G
15690852 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15693503 original size:873 final size:868
Alignment explanation
Indices: 15691606--15694392 Score: 3337
Period size: 878 Copynumber: 3.2 Consensus size: 868
15691596 GGGGACCCAG
* * * * * *
15691606 TCGATTCC-CGGCTTACGCATCCCG-CCCTTCTAGCCGACATAGTGTCCGCCCACCCGCCCGTCC
1 TCGA-TCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCC
* * * * **
15691669 GCTCATTTCGTTGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAGGATTGGAACGAA-TCG
64 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACGAACT-G
** * * *
15691733 AGGGTTGTGGCAACAAGATCGGTAGCATGCAGAGGGGGACCCAACCGAACCCTGGCTTGCGCAT-
127 AGGGTTGTGGCAGTAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCTGGCTTGCGCATC
** * *
15691797 CTCGCCCCTCTGG-CTGACTGAGCGGTCGCACGCTCATTTCGTGTGTCGACTTAGGCATACGGAG
192 CT-GCCCCTCTGGTC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
15691861 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAGCATG
255 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATG
* * * * *
15691926 TGCTGGTGCCGCATTTTGCTTCGTGGGGGCACCATTGCCAGAGCATCGTTAGAGAACCTGACCGA
320 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGAACCTGACCGG
* * * * * * *
15691991 CAGCAATGGGGTTTCGACGATCGGGGGGGCCGGGGGGAGTGCGCACATGATGTGCGATGGGTGCT
385 CGGCATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGC-
* * *
15692056 A-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGGGAACTCACACCCCCTTAA
449 AGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * *
15692120 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTAATTAAAGTGTCTGAAATGGGGACACT
513 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTAAAATGGGGACACT
* * *
15692185 TTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGATGAATTTTTTTGTGCAAGCCA
577 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
15692250 A-AAAGAATACAAGGAT--CATGCTTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
642 ACAAA-AATACAAGGATCACAT-C-TACCAAGTTTGGGGCCAAAA-ACCTTTCGAAAAAATTTTA
* **
15692312 AAAAACCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTCCCATG
703 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA---G--TTCCCAT-
* *
15692377 AAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCA
762 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCA
*
15692442 CACAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTA
827 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
15692484 TCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCTCGCCTGCCCGCCCGT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGC
* * * * **
15692549 TTGTTACGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACTGAGG
* * * * * **
15692614 GTTGCGGTAGTAGGATCGATAGCATGTAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCTG
130 GTTGTGGCAGTAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCTGGCTTGCGCATCCTG
* * * * *
15692679 CCCCTTTGGTCGATTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
195 CCCCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
15692744 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATGTGTTG
260 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTG
* * * *
15692809 GTGCCGCATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGATCGGTGGCA
325 GTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGAACCTGACCGGCGGCA
* * * *
15692874 TTGGGGTTCCGGTGATCGGAGGGGCCGGGGGGTGTGCGCACGTGATGTACG-TAAGGTGGCAGGC
390 TTGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTACGAT-GGGT-GCAGGT
*
15692938 ACCTTGCCCTGTATATTGGCCCCTCCTTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAG
453 A-CTTGCCCT-TATATTGG-CCC-CC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA-
* * *
15693003 AAGATCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATT-AAGTGTCTTAAATGAGGGACAC
512 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG-GGGACAC
* * * * *
15693067 TTTTTACAAATGGTCACCAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTATGCATGCT
576 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
15693132 AACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAA
641 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA-CCTTTCGAAAAAATTTTAAA
15693197 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG-T-CC-T-AACTTCA
705 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTCCCATAAACTTCA
* * * ** *
15693258 CTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAA
770 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACACAAAAA
*
15693323 TATGAAGATGTGCCTAAAACCACCTACCACCCTA
835 TATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** *
15693357 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCGCCCGCCCGT
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGC
* * * * * *
15693422 TCGTTTCATCGGTTGGCCTAGGCATATGGAGTTCATTCCCAGTGTATGATCAGACTGAACTGGGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACTGAGG
* * * * *
15693487 GTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTTCGCATCCCG
130 GTTGTGGCAGTAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCTGGCTTGCGCATCCTG
* * * *
15693552 CCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCAT
195 CCCCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
15693617 TCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACGAACTGAGGATTGCGGCAGT
260 TCCCAGTCTAAG---AT-CAG---A---CC-G-----GA-C---CG-A--G-GG-TTGCGGCAGC
* * * *
15693682 ACATGCTGGGC-TGAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGC
300 ACATGCTGGGCTTG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGC
** * * * *
15693746 ATCACCTGAGAACCTAACCGGCGGCATTGGGGTTCTGATGATC-AAGGGGGCCGGGGGGGTGTGC
364 ATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGA-GGGGCC-GGGGGGTGTGC
* * *
15693810 ACACATGATGTCCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACC
427 GCACATGATGTACGATGGGTGCAGGTACTTG-CCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
15693875 TTGAGAACTCAC-CCCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
491 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15693939 AGTGTCTAAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTATCCACTTCGAGTTTTTAGC
556 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
15694004 TGAAATTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGG-CTACAA
621 TG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA
* * *
15694068 CACTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
685 C-CTTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
15694133 AAACGAGTCATCTACCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
748 AAATGAG---T-T-CCCAT-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
15694198 CTATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCT-AACCCACCTACCACCCTA
807 CTATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
15694259 TCGATCCAAGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCACCCGCCCGCTCGC
1 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGC
* * * *
15694324 TCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGG
66 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACTGAGG
15694389 GTTG
130 GTTG
15694393 CAACAGCACA
Statistics
Matches: 1625, Mismatches: 218, Indels: 108
0.83 0.11 0.06
Matches are distributed among these distances:
873 328 0.20
874 1 0.00
875 1 0.00
876 4 0.00
877 10 0.01
878 357 0.22
879 14 0.01
880 13 0.01
881 3 0.00
882 16 0.01
883 198 0.12
884 40 0.02
885 3 0.00
889 2 0.00
890 1 0.00
891 1 0.00
892 95 0.06
893 133 0.08
894 28 0.02
895 2 0.00
896 4 0.00
897 17 0.01
898 113 0.07
899 25 0.02
900 3 0.00
901 2 0.00
902 130 0.08
903 81 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAACTGAGGG
TTGTGGCAGTAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCCCTGGCTTGCGCATCCTGC
CCCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGAACCTGACCGGCGGCAT
TGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCAGGTACT
TGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACATCTACCAAGTTTGGGGCCAAAAACCTTTCGAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTCCCATAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACACAAAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTA
Found at i:15695233 original size:26 final size:26
Alignment explanation
Indices: 15695203--15695255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695193 GTTGACTTAG
*
15695203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15695229 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15695255 G
1 G
15695256 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15697365 original size:26 final size:26
Alignment explanation
Indices: 15697336--15697385 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15697326 GACTTAGGCA
* *
15697336 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAATCTAAGCG
**
15697362 TACGAAGTTTTTTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
15697386 ATCAGATCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCG
Found at i:15699116 original size:147 final size:147
Alignment explanation
Indices: 15698851--15699117 Score: 324
Period size: 147 Copynumber: 1.8 Consensus size: 147
15698841 TCGATCTACG
* * * * * * * *
15698851 GCTTGCGCTTCCCGTCTCTCTGGCTGGCGTAGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
1 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCACCCGCACGCTCATTTCGTAGGATGACTTAGG
* * * *
15698916 GATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAAGGTTGCGGCAGCATGCAGAGGGG
66 CATACAGAGTTCATTCCCAGTCTAAGATCAAACTCGACCAAAGGTTACAGCAGCATGCAGAGGGG
15698981 GACCCGGCCGATCCCCT
131 GACCCGGCCGATCCCCT
*
15698998 GCTTGCGCATCCCG-CTCCTCTTGCCGGC-TGAGCACCCGCACGCTCATTTCGTAGGATGACTTA
1 GCTTGCGCATCCCGTCT-CTCTGGCCGGCGT-AGCACCCGCACGCTCATTTCGTAGGATGACTTA
* ** * *
15699061 GGCATACAGAGTTCATTCCCATTCTAAGATCGGA-TCCGACCGAGGGTTACAGCAGCA
64 GGCATACAGAGTTCATTCCCAGTCTAAGATCAAACT-CGACCAAAGGTTACAGCAGCA
15699118 CTTGCAGGGC
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
146 4 0.04
147 95 0.96
ACGTcount: A:0.18, C:0.31, G:0.27, T:0.23
Consensus pattern (147 bp):
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCACCCGCACGCTCATTTCGTAGGATGACTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAAACTCGACCAAAGGTTACAGCAGCATGCAGAGGGG
GACCCGGCCGATCCCCT
Found at i:15701606 original size:26 final size:26
Alignment explanation
Indices: 15701570--15701620 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15701560 TAACTTAGGG
*
15701570 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
15701596 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15701621 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15704283 original size:26 final size:26
Alignment explanation
Indices: 15704247--15704299 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15704237 GTTGACTTAG
15704247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15704273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15704299 G
1 G
15704300 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15705159 original size:26 final size:26
Alignment explanation
Indices: 15705121--15705176 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15705111 TGGGTTGACT
*
15705121 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCAAACGGAGTTCATTCCCAGTC
*
15705147 TAAGCAAATGGAGTTCATTCCCAGTC
1 TAAGCAAACGGAGTTCATTCCCAGTC
15705173 TAAG
1 TAAG
15705177 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCAAACGGAGTTCATTCCCAGTC
Found at i:15708134 original size:859 final size:865
Alignment explanation
Indices: 15706468--15710383 Score: 4613
Period size: 905 Copynumber: 4.4 Consensus size: 865
15706458 TTTTGAAAAT
* *
15706468 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGGCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
15706533 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
66 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* *** * * * * * *
15706598 TCCCGTCTCTCTAAAC-AGTGTAGTGCCCGCCCGCCCGCCCTCCCACTCATTTCGTCGGTTGGTT
131 TCCCGTCTCTTTGGCCGA-TGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
15706662 TAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCA
195 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCA
* * * * * *
15706727 ATAGCACGCAAAGGGGGA-TCGACCGATCCCAGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAA
260 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GA
* * * * * * *
15706791 TGCCCGCACGCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGA
324 -GCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* * * ** *
15706856 T-CGGACCAAGGGTTACGGTAGCACATGCTGGGTTCGGGCATGTGCTGGTG-CTGTATTTTTCTT
388 TCCGTACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GTATTTTTCTT
** * * * *
15706919 CGTCGGG-GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCAGA-ATTGGGGTTCCAACG
452 CGTCGGGAGCACCATCGTCGGAGCA------G-GAACCTAACCGAC-GACAATGGGGTTCCGACG
* * *
15706982 AT-C-G-GGGGGGTGTGCGGACATGATGTTAGATGGGTGCTGGTACTTGGCCCTTATATTGACCC
509 ATGCGGAGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
15707044 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTT
574 CCTATCCCTCATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
15707109 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATATTGT
639 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATAGTCACAAAATCTTGT
* * * *
15707174 ACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCATGTCTAC
704 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAACAAAAA-TAAAAGGATCACGTCTAC
* ** * ** *
15707238 CAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTAAACCACAGAAAGTTTCGA
768 CAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCGA
* ** *
15707303 AACTTGTGAAAAATA-AAAATGAGTCATCTTGC
833 AAATCATGAAAAATAGAAAATGAGTCGTCTTGC
* *
15707335 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATTAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * **
15707400 GACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCCCA
66 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* ** * * * *
15707465 TCCCGTCTCTTTGGTCGATGTAGTGCCTGCCCACCCGCCCACCTGCTCATTTCGTCGATTGGCTT
131 TCCCGTCTCTTTGGCCGATGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
15707530 AGGCATACGGAGTTCATTCCCAATCTAGGATCAGACCAGA-TCGAGGGTTGCGACAGCAGCATCA
196 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCA
* * * * ** * ** * * *
15707594 GCAGTATGTAGAGGGGGACCCGAGTGATCCCTTGGCTTGCGCATCCCATCCCTCTAGTCGACTGA
260 GTAGCACGCAGAGGGGGACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15707659 GTGCCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
324 --GCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
* * ** * **
15707724 A-CCGTACTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCACATTTTTCTT
387 ATCCGTACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTT
* * * *
15707788 CGTC-GGAGCACCATCGTC-G-G-A-GAACCTAACCGACGACATTAGGGTTCTGGCGAT-CGG-G
452 CGTCGGGAGCACCATCGTCGGAGCAGGAACCTAACCGACGACAATGGGGTTCCGACGATGCGGAG
*
15707846 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
517 GGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * **
15707911 TCATCAGACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
582 TCATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
* * *
15707976 TAGCCATTAAAGTTTCTGAAATGAGGACACTTTTTTCAAAATAGTCACAAAATCTTGTACACTTC
647 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-GAAATAGTCACAAAATCTTGTACACTTC
* * *
15708041 GAGTTTTTAGCT-AAATTTTTTGTGCAA-GCCAACAAAAATACAAGGATCACGTCTACCAGGTTT
711 GAGTTTTTAGCTGAATTTTTTTGTG-AATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT
* * * * * *
15708104 -GGGCCAAAACTCTTTCCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCG
775 GGGGCCAAAACGCCTT-CCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCGAAAATCA
15708168 TGAAAAATAGAAAATGAGTCGTCTTGC
839 TGAAAAATAGAAAATGAGTCGTCTTGC
15708195 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15708260 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
66 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* * * * * *
15708325 TCCCATCTCTTTGGTCGATGTAGTACCTGCCCGTCTGCCCGCCCGCTTGTTTCTTCGGTTGGCTT
131 TCCCGTCTCTTTGGCCGATGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * * *
15708390 AGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGCATTGTGGCTGCAGGATCGG
196 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAG
* * * *
15708455 TAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTCGCGCATCCCACCCCTCTGGCCGGCTGAGC
261 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
15708520 ACCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATGC-AGAGTTCATTCTCAGTCTAAGCATACGG
326 -CCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAG-AT-C-G
*
15708584 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACA
386 -G---A-T--C---C--------G-T---ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
*
15708649 TGTGCTGGTGTCGTATTTTTCTTC-TCCAGG-GCACCATCGTCGGAGCATCGCCAGGGAACCTAA
429 TGTGCTGGTGTCGTATTTTTCTTCGT-CGGGAGCACCATCGTC-G-G-A--G-CA-GGAACCTAA
* *
15708712 CCGACGGCAATGGGGTTCCGACGATCAGGGGGGCCGGAGGGGGGTGTGCGCACATGATGTTTGAT
486 CCGACGACAATGGGGTTCCGACGAT-------G-CGGAGGGGGGTGTGCGCACATGATGTTCGAT
* *
15708777 GGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCC
543 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCC
15708842 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
608 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
15708907 ACACTTTTTTGAAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTTTGTGAA
673 ACACTTTTTTGAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAA
15708972 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT
738 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT
** *
15709037 TAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
803 TAAAAAATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
15709100 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15709165 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
66 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* * * * *
15709230 TCCCGTCTCTTTGGCCGATGTAGTACCTGCCCGTCTGCCCGCCCACTTGTTTCGTCGGTTGGCTA
131 TCCCGTCTCTTTGGCCGATGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * **
15709295 AGGTATACGGAGTTCATTCCCAGTCAAAGATCAGACTGGACTGAGGGTTGCAGTAGTAGGATTGG
196 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAG
* * * *
15709360 TAGCACGCAGAGGGGAACCCAACCGATCCCCGGCTCGCGCATCTCGCCCCTCTGGCCGGCTGAGC
261 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
15709425 ACCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCTCAGTCTAAGCATACGGA
326 -CCGCAAGCTCGTTTCGTGGGTTGAC-T-----T--AG-G--CA---T-A--C---G---A---A
* *
15709490 GTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCA
364 GTTCATTCCCAGTCTAAGATCGGATCCGTACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* **
15709554 TGTGCTGGTGCCGTATTTTTCTTCACCGGG-GCACCATCGTCGGAGCATCACCGGGGAACCTAAC
429 TGTGCTGGTGTCGTATTTTTCTTCGTCGGGAGCACCATCGTCGGAG---CA----GGAACCTAAC
* *
15709618 CAAC-AGCAATGGGGTTCCGACGATCGGGGGGGCCGGAGGGGGGTGTACGCACATGATGTTCGAT
487 CGACGA-CAATGGGGTTCCGACGAT-------G-CGGAGGGGGGTGTGCGCACATGATGTTCGAT
* * * *
15709682 GGGTGCTAGTACTTGGCCCTTATGTTGGCCCCCTATCCCTTATCAAACCTCGAGAACCCACACCC
543 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACCCACACCC
15709747 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
608 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
15709812 ACACTTTTTTGAAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTTTGTGAA
673 ACACTTTTTTGAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAA
15709877 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT
738 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT
** * *
15709942 TAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
803 TAAAAAATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
* *
15710005 CATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATAGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
15710070 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCA
66 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
* * * * * * * * *
15710135 TCCCGTGTCTCTGACCGACGTA--G--TGCCCTTTCGCCCGCTCGCTCGTTTCATCAGTTGGCTT
131 TCCCGTCTCTTTGGCCGATGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
15710196 AGGCATACGGAGTTCATTCCCCATCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCAG
196 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAG
* * ** * *
15710261 TAGCAAGCAGAGGGGGACCCGACCGATACCCGGCTTATGTATCCCGCCCCTCTGGCCGGTTGAGC
261 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
15710326 GCCAGCACGCTCGTTTTGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
326 -CC-GCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
15710384 CATACGAAGT
Statistics
Matches: 2678, Mismatches: 267, Indels: 199
0.85 0.08 0.06
Matches are distributed among these distances:
857 5 0.00
858 86 0.03
859 277 0.10
860 310 0.12
861 2 0.00
862 1 0.00
865 1 0.00
866 2 0.00
867 241 0.09
868 14 0.01
869 145 0.05
870 1 0.00
872 1 0.00
876 19 0.01
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 64 0.02
885 2 0.00
887 2 0.00
888 1 0.00
891 3 0.00
893 2 0.00
894 2 0.00
895 28 0.01
896 1 0.00
900 1 0.00
901 143 0.05
902 23 0.01
903 1 0.00
904 42 0.02
905 1203 0.45
906 14 0.01
910 1 0.00
911 1 0.00
913 2 0.00
914 1 0.00
916 2 0.00
919 1 0.00
921 1 0.00
922 1 0.00
923 1 0.00
924 1 0.00
927 1 0.00
928 1 0.00
929 2 0.00
930 2 0.00
931 19 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (865 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
TCCCGTCTCTTTGGCCGATGTAGTGCCTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCAG
TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
CCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCC
GTACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTC
GGGAGCACCATCGTCGGAGCAGGAACCTAACCGACGACAATGGGGTTCCGACGATGCGGAGGGGG
GTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATAGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAA
TAGAAAATGAGTCGTCTTGC
Found at i:15712675 original size:26 final size:26
Alignment explanation
Indices: 15712639--15712691 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15712629 GTTGACTTAG
**
15712639 GCATACAGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15712665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15712691 G
1 G
15712692 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15713581 original size:26 final size:26
Alignment explanation
Indices: 15713544--15713593 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15713534 GTTGACTTAG
*
15713544 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
15713570 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
15713594 AAGATCTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:15714481 original size:25 final size:26
Alignment explanation
Indices: 15714446--15714497 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714436 GTTGACTTAG
* *
15714446 GCATACAGAGTT-CATTCCAGTCTAA
1 GCATACAGAGTTGAATCCCAGTCTAA
*
15714471 GCATACGGAGTTGAATCCCAGTCTAA
1 GCATACAGAGTTGAATCCCAGTCTAA
15714497 G
1 G
15714498 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTGAATCCCAGTCTAA
Found at i:15715365 original size:26 final size:26
Alignment explanation
Indices: 15715329--15715379 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15715319 TGACTTAGGT
*
15715329 ATACGGAGTTCATTCCGAATCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
15715355 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
15715380 ATCGGACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:15716246 original size:26 final size:26
Alignment explanation
Indices: 15716210--15716262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716200 GTTGACTTAG
*
15716210 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15716236 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15716262 G
1 G
15716263 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15717395 original size:26 final size:26
Alignment explanation
Indices: 15717366--15717418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15717356 GTTGACTTAG
15717366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15717392 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15717418 G
1 G
15717419 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15719110 original size:881 final size:885
Alignment explanation
Indices: 15717392--15724529 Score: 8715
Period size: 907 Copynumber: 8.0 Consensus size: 885
15717382 CCCAGTCTAA
* * *
15717392 GCATACGGAGTTCATTCCTAGTCTAAG-ATC-G-GA--TGGGACCGAGGGTTGCAGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGAGATCTCGGACCGAGGGTTGCGGCAGCACATG
* * * * *
15717452 CTGGGATTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAAGAATCGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
* * *
15717517 GGAGAACCTGACTAGCGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGAGGGGGGTGTGCGCA
131 GGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GG-GGGGGGTGTGCGCA
* * *
15717582 CATGATGTGCAATGGGTGCTAGTACTAGGCCCTCATATT-GCCCCTTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCG
15717646 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
15717711 GTCTGAAAAGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
15717776 ATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACATCTACTAAGTTTGGGGCCAAAAATCCT
388 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCT
**
15717841 TCCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACG
453 TCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACG
* *
15717906 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATA
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15717971 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCA
583 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** ** * * *
15718036 CGGCTTGCGCATCCCGTCTCTCTGGCCAGCACAGTGCTTGCCCGCCCACCC-GTCCGGTCATTTC
648 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAGCCCGCTCATTTC
* * * ** ***
15718100 ATCGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTCTGAGATTGGACTGGACCAAGGGTTACGG
713 ATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTACGG
* * *
15718165 TAGCAGGATCGAG-AGCATGCAGAAGGGGACCCAGTCGATCCCCGGATTGCGCATCCCGCCCCTC
778 TAGCAGGATCG-GCAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
15718229 TGGCCGACTGACCACCCGCACGCTCGTTCCATGGGTTGACTTAG
842 TGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* **
15718273 GCATACGGAGGTCATTCCCAGTCTAAG-ATC-G-GA-CT-GGACCGAGGGTTGTTGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGAGATCTCGGACCGAGGGTTGCGGCAGCACATG
* * *
15718333 CTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
15718398 GGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGGGGTGTGCGCAC
131 GGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGGGTGTGCGCAC
*
15718463 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
194 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGA
15718528 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
259 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
15718593 TCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCGAGTTTTTAGCTGAA
324 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
15718658 TTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
389 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTT
* * *
15718723 CCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACAA
454 CCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGA
* *
15718788 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAA
519 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
15718853 AAATGGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACTTACCACCCAATCGATCCAC
584 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ***
15718918 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCTTTCG-CCAGCCCGCTCATTTCA
649 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAGCCCGCTCATTTCA
* *
15718982 TCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATTGGACCAAAATGAGGGTTACGG
714 TCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTACGG
* * * * **
15719046 TAGCAGGATCGGCAACATGCAGAGGGGGACTCGGCCGATCCCCAGG-TTGCGTATCCTACCCCTC
778 TAGCAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCCCC-GGCTTGCGCATCCCGCCCCTC
* * *
15719110 TGGCCGGTTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAG
842 TGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
15719154 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATGGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-C---G----------G----AGATC---TCGGAC
*
15719219 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGG
45 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* ** * * *
15719284 CACCATCGTCGGAGAATCGTTGGAGAACCTAACCAGCGGCATTGGGGTTCCGGCGATCGAGGGGG
110 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
15719349 CCGGGGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTAGTACTAGGCCCTCATATTGGCCCC
175 CC-GGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCC
*
15719414 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
238 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
15719479 CTACCAGTAGCCATTAAAGTGTCTGAAAAGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTA
303 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
15719544 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT-CCTAACAAAAATACAAGGATCACATCTTCT
368 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACATCTACC
* * * *
15719608 AAGTTTAGGGCCAAAAATCCTTCCAAAAAAAGTTTAAAAAATCCTGAACCACAAAAAGTTTGGAA
432 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAA
*
15719673 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
497 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
15719738 TGTATGAATTTAGC-AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
562 TGTATGAATTTA-CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
** ** * *
15719802 CACCTACCACCCTATCGATCCACGGCTTGCAAATCCCGTCTCTCTGGCTAGCGCAGTGCCTGCCC
626 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
15719867 GTCCGCCC-GCCCGTTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTGAGAT
691 GCCCGCCCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
*** * * * *
15719931 CGGATTGGACCA-G-GGGTTGCGGCAGCAGGATTGGGAGCATGCAGAGGGGGACCCAGCCGATCC
756 CGGACCAGA--ATGAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCC
*** ** * * *
15719994 CCGAAATGCGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCATGCTCGTTCCATGGGTTGACTT
819 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTT
15720059 AG
884 AG
* * * *
15720061 GCATGCAGATTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGAG---------A-TC-----T----C-GGAC
* * *
15720126 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
45 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * *
15720191 CACCATCGCCGGAGCATCGCCGGAGAACCTGAGCAGCGGCATTGGGATTCCGACGATCGGGGGGG
110 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
15720256 TCGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
175 -C-CGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCC
15720321 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
237 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15720386 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGT
302 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
15720451 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACC
367 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
* * * * *
15720516 AAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTAGAA
432 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAA
* * *
15720581 AATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCAT
497 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
15720646 TGTATGAATTTACCAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
562 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * * *
15720711 ACCTACCACCCTATCGATCCACAGCTTGC-AATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCCG
627 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
15720775 CCCGTCC-GCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC
692 CCCGCCCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * *
15720839 GGA-CTGGATCAAGGGTTGCGGTAGCAGGATCAGG-AGCATG-AAAGGGGGACTCAGCCGATCCC
757 GGACCAGAAT-GAGGGTTACGGTAGCAGGATC-GGCAGCATGCAGAGGGGGACCCAGCCGATCCC
* * * * *
15720901 CGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCACGTACGCTCGTTTCATGGGTTGACTTA
820 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
15720966 G
885 G
15720967 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGAG---------A-TC-----T-----CGGAC
** **
15721032 CGAGGGTTGTAGCAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGCATTTTTCTTCATC-GGG
45 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* *
15721096 -------G-C--A-CATCGCCGGAGAACCTGACCAGCGGTATTGGGGTACCGACGATCGGGGGGG
110 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
15721150 CC--GGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTAGCCCCCT
175 CCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCT
* * *
15721213 CTCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAATAGCATTTGAGATTTTACAGGTTTGCT
240 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
15721278 GCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCATAAAATCTTGTACA
305 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15721343 CTTCGATTTTTTAGCTGAATTTTTTTAG-GCATGCCAAAAAAAATACAAGGATCACATCTACCAA
370 CTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
* * **
15721407 GTTTGGGGCCAAAAATCCTTCC-AAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
434 GTTTGGGGCCAAAAATCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAA
* * *
15721471 ATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATG
498 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
15721536 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATTG-AGATGTGCCTAAACCC
563 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA-TGAAGATGTGCCTAAACCC
* * * * *
15721600 ACCTACCACCCTATCAATCCATGGCTTGCGTATCCCGTCTCTGTGGCCGACGTAGTGCCAGCCTG
627 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-G
* * * * *
15721665 CCCGCCCGCCCGTCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAATC
688 CCCGCCCG-CC--CAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
* ** * * * * * * ** *
15721729 TAAGATTGGACCAGACCGAGTGTTACAGTAGCAGGATCAGCAACATGCAAAAGGGGACCTTGTCG
750 TAAGATCGGACCAGAATGAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCAGCCG
* * * ** * * *
15721794 ATCCCTGGCTTGTGCATACTACCCCTCTGTCCGGCTGAGCACCCACACGCTCGTTCCATGGGTTG
815 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
15721859 ACTTAG
880 ACTTAG
*
15721865 GCATACGGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAATCTAAGATCGGACAAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCA-TCGGAG----------ATC-----TCGGAC----C
* * * *
15721930 TGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCATCGAGG
46 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * * * *
15721995 CACCATCG-CTGGGGCATCGTCGGAGAACCTGA-CTGACGACATTGGGGTTTCGACGATCGGGGG
110 CACCATCGTC-GGAGCATCGCCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGG
** * * ** *
15722058 GGCCGGGGGGCTTATGCGCACATGATGTGTGATACGTGCT-GCTACTTGGCCCTTATATTGGCCC
173 GGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG-TACTTGGCCCTCATATTGGCCC
*
15722122 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
237 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15722187 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGT
302 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
15722252 ACACTTTGATTTTTTAGCTGAATTCTTTTGGGCATGCCAACAAAAATACAAGGATCACATCTACC
367 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
** * * *
15722317 AAGTTTGGGGCCAAAACGCCTTCC-AAAAAACTTTTAAAAAATCCCAAACCGCAAAAAGTTTTGA
432 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCACAAAAAGTTTGGA
* * *
15722381 AAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCA
496 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
15722446 TGGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATTAAGATGTGCCTAAACC
561 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACC
* * *
15722511 CACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AC-AATGTGCCCGCC
626 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-GTGCCCG--
* *
15722574 CACCCGCCCGCCCACCCGCCTGCCCGTACATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
688 --CCCGCCCGCCCA---GCC--CGC-T-CATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
* ** * * * *
15722639 CCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCAGGATCGAC-GCCACGCAGAGGGGGAC
744 CCAGTCTAAGATCGGACCAGAATGAGGGTTACGGTAGCAGGATCGGCAG-CATGCAGAGGGGGAC
* * * *
15722703 CCAACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
808 CCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCA
*
15722768 TGGGTTGACCTAG
873 TGGGTTGACTTAG
* *
15722781 GCATATGGAGTTCATTCCCAGTCTAAG-ATC-G-GA-C-CGGACCGAAGGTTGCGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCGGAGATCTCGGACCGAGGGTTGCGGCAGCACATG
* * ** * *
15722841 CTGGACTCGGGCATGTGTTGGTGCCATATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
* * * *
15722906 GGAGAACCTGACC-GACGGCATTAGGGTTCCGATGATC-AGGGGGCC--GGGGGGTGTGCGTACA
131 GGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACA
* * *
15722967 TGATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTCTCCCTCATCAAACCTCGAG
195 TGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
15723032 AACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
15723097 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTAAAG
325 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
15723162 TTTTTT-TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
390 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTC
* * ** * * *
15723226 CGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTAAAAAATACAAAATGAG
455 CGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAG
* *
15723291 TCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAA
520 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
15723356 AATGGCATTGGCATGTAGAATATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAAC
585 AATGGCATTGGCACGTAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * *
15723421 GGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCGCCCACCCTTCCTTCCGCT
649 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCA-----GC--CCGCT
* * * * * *
15723486 CATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AAGG
707 CATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGG
* * * * * * * ** * * *
15723550 TTATGGCAGCAGGATCAGCAACACGTAGAAGGGGACCTGGTCGATCCCTGGCTTGCGCATCCTGC
772 TTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGC
* * *
15723615 CCCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAG
837 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
15723664 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CGGAG---A-T--C--TC---G----GACC-G--
* * * * *
15723729 CAAGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGG
47 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG
* * * ** * * **
15723794 CACCATCGTCGGAGCATCTCGTCGGAGAACCTGACC-GAAGGCAATATGATTTCGGTGATC-GGG
110 CACCATCGTCGGAGCA--TCGCCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGG
* * * *
15723857 GGGCCGAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
172 GGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCC
15723922 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
237 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
15723987 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGT
302 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
15724052 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCACGCCAACAAAAATACAAGGATAACGTCTACC
367 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
* * * *
15724117 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAA
432 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAA
* *
15724182 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCAT
497 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
15724247 TGTATGAATTTACAAGCCATAGAAATGGCATTGGCTCATAGCAATATGAAGATGTGCCTAAACCC
562 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
15724312 ACCTACCATCCTATTGATCCACGGCTTACGCATCACGTCTC-CTTGGTCGGCGTACTGCCCGCAC
627 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCCC
* ** * * * * * *
15724376 GCCCGCCCA-CCCGCTCGTTTTGTCAGTTGGCTTAGGCATAAGGAGTTCATTACTAGGCTAAGAT
691 GCCCGCCCAGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * ** * * * *
15724440 CGGACC-GGATCGAGGGTTACGGTACCAAGATCGATAGCACGCAAAGGAGGACTC-GACCGATCC
756 CGGACCAGAAT-GAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCAG-CCGATCC
* * *
15724503 CCGGCTTGCGCGTCCCGTCTCTCTGGC
819 CCGGCTTGCGCATCCCGCCCCTCTGGC
15724530 TGACATAGTG
Statistics
Matches: 5506, Mismatches: 582, Indels: 313
0.86 0.09 0.05
Matches are distributed among these distances:
879 1 0.00
880 56 0.01
881 768 0.14
882 5 0.00
883 121 0.02
884 68 0.01
885 2 0.00
886 184 0.03
887 272 0.05
888 15 0.00
889 441 0.08
890 132 0.02
891 4 0.00
893 7 0.00
894 58 0.01
895 7 0.00
896 1 0.00
897 41 0.01
898 212 0.04
899 8 0.00
900 3 0.00
901 1 0.00
902 6 0.00
903 1 0.00
904 8 0.00
905 57 0.01
906 244 0.04
907 1028 0.19
908 457 0.08
909 79 0.01
910 48 0.01
911 63 0.01
912 459 0.08
913 288 0.05
914 187 0.03
915 34 0.01
916 140 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATCGGAGATCTCGGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCC
GGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTAGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAGCCCGCTCATTTCATC
GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTACGGTAG
CAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:15719184 original size:26 final size:26
Alignment explanation
Indices: 15719154--15719206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15719144 GTTGACTTAG
*
15719154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15719180 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15719206 G
1 G
15719207 ATCGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15720997 original size:26 final size:26
Alignment explanation
Indices: 15720967--15721019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720957 GTTGACTTAG
15720967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15720993 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15721019 G
1 G
15721020 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15722584 original size:12 final size:12
Alignment explanation
Indices: 15722567--15722598 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15722557 GCCACAATGT
15722567 GCCCGCCCACCC
1 GCCCGCCCACCC
15722579 GCCCGCCCACCC
1 GCCCGCCCACCC
*
15722591 GCCTGCCC
1 GCCCGCCC
15722599 GTACATTTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.72, G:0.19, T:0.03
Consensus pattern (12 bp):
GCCCGCCCACCC
Found at i:15723694 original size:26 final size:26
Alignment explanation
Indices: 15723664--15723716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15723654 GTTGACTTAG
*
15723664 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15723690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15723716 G
1 G
15723717 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15724775 original size:26 final size:26
Alignment explanation
Indices: 15724739--15724789 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15724729 TGACTTAGGA
15724739 ATACAGAGTTCATTCACAGTCTAAGC
1 ATACAGAGTTCATTCACAGTCTAAGC
*
15724765 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCACAGTCTAAG
15724790 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAGTCTAAGC
Found at i:15725435 original size:24 final size:25
Alignment explanation
Indices: 15725390--15725439 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
15725380 GGTTACCTAG
*
15725390 GCATGCGGAGTTCATTCCAGTCTAA
1 GCATGCAGAGTTCATTCCAGTCTAA
15725415 GCATGCAGAGTT-ATTCCAGTCTAA
1 GCATGCAGAGTTCATTCCAGTCTAA
15725439 G
1 G
15725440 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
GCATGCAGAGTTCATTCCAGTCTAA
Found at i:15726302 original size:24 final size:25
Alignment explanation
Indices: 15726270--15726319 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
15726260 GTTGACTTAG
*
15726270 GCATACGGAGTTGATT-CAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15726294 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15726319 G
1 G
15726320 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15726732 original size:872 final size:881
Alignment explanation
Indices: 15725037--15729045 Score: 4665
Period size: 882 Copynumber: 4.5 Consensus size: 881
15725027 CCCTTAAAGA
* * * *
15725037 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCACTGTAAGAATTTACAAGCCATAAAAATGACA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15725102 TTGG-A-GTGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 TTGGCACGTG--GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15725165 CGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCTCCCGTCTGCCCACTCGTTTCGTCGGTTG
129 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CCG-CCTACC--C-GCCCGCTCGTTTCGTCGGTTG
* * ** * * *
15725230 GCTTA-GCATACGGAGTTCATTCCTAGTCTAACATTGGATCGGACCGAGGGTTGCGGTAGTAGGA
189 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
* * *
15725294 TCGATAGCACGTAGTGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCT-TCCCTCTGG-CGGC
254 TCG-CAGCACGTAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * * *
15725356 TGAGCACCGCACGCTCATTTTGTGGGTT-ACCTAGGCATGCGGAGTTCATTCCAGTCTAAGCATG
317 TGAGC-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATA
*
15725420 CAGAGTT-ATTCCAGTCTAAGATCGGACCGGACAGGGTTGCGG-AGCACATGCTGGGGCTCGGGC
381 CAGAGTTCATTCCAGTCTAAGATCAGACCGGAC-GGGTTGCGGCAGCACATGCT-GGGCTCGGGC
* ** ** ** * * * * *
15725483 ATGTGTTGGTGTGGCATTTTTCTTCGCCGGGGCA-CA-TCAC-CGAAGAACTTAACCGGTGGTAT
444 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCACTGGCTCGGAGAACCTGACCGGCGGCAT
* * * * *
15725545 TGGGGTTTCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCTCATGATGTGTGATGGGTGCTGCTA
509 TGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
15725610 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
573 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
15725675 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
638 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
15725740 AAATGGTCACAAAAT-TTGGTACACTTCAAGTTTTTTGCTGAATTTTTTTATGCATACCAACAAA
703 AAATGGTCACAAAATCTT-GTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAA
* *
15725804 AATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATC
766 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCC-AAAAAATTTTAAAAAATC
* * * *
15725868 CCGACCCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTTGTCTT
830 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15725920 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
15725985 TTGGCACGTGGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15726049 CATCCCGTCTCTTTGGTCGACGTAGTGCTCGCCTGCCCGCCCACTCGTTTCGTCAGTCGGCTTAG
131 CATCCCGTCTCTCTGGCCGACGTAGTGC-CGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * *
15726114 GTTTACGGAGTTCATTCCCAGTCTTAGATCAGACCGGAGTGAGGGTTACGATAACAGGATCAGCA
195 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC-GCA
* * * * *
15726179 GCACGTAGAGGGGGACCCGACCGATCTTCGGCTTGCGTATCCTGCCCCTCTAGCTGGTTGAGCCC
259 GCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCC
* * *
15726244 GCACGCTCATTT-ATGGGTTGACTTAGGCATACGGAGTTGATT-CAGTCTAAGCATACGGAGTTC
324 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTC
* * *
15726307 ATTCCAGTCTAAGATCAGATC-GACGTGGTTACGGCAGCACATGCT-GGCTCGGGCATGTGTTGG
389 ATTCCAGTCTAAGATCAGACCGGACG-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
15726370 TGCCACA-TTTTCTTCATCGGGGCACCA-T-GC-CGGAGAACCTGACCGGCAGCATTTGGAGTTC
453 TGCCGCATTTTTCTTCATCGGGGCACCACTGGCTCGGAGAACCTGACCGGCGGCA-TTGGGGTTC
* * * *
15726431 TGACAATC-GAGGGGCC-GGGGGGTGTGTC-CACATGATGTGCGATGGGTGCTAGTACTTGGCCC
517 CGACGATCGGGGGGGCCGGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
15726493 TTATATT-GCCCCC-ATCCCTCATCAAACCTTGAGAACTCTCACCCCCTTAAAG-GCATTTGAGA
581 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
15726555 TTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAATGGGCGACACCTTTTTCAAATGG
646 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TAAAATGGG-GACACTTTTTTCAAATGG
* * *
15726620 TCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTAT-CGTGCCAACACAAATACAAG
709 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAG
* * *
15726684 GATCACGTCTACGAAGGTTT-GGGCCAAAACTCCTTTCCGAAAAATTTTAAAAAATCCCG-ATCG
774 GATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCCCGAACCG
15726747 CAAAAAG-TTCAAAAATTCATG-AAAATAGAAAA-GAGTCGT-TT
838 CAAAAAGTTTCAAAAA-TCATGAAAAATAGAAAACGAGTCGTCTT
15726788 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15726853 TTGACACGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
66 TTGGCACG-TGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
15726917 GCATCCCGTCTCTCTGGCCGACGTAGTG-C-CC-ACCCGCCCGCTCCTTTCGTCGGTTGGCTTAG
130 GCATCCCGTCTCTCTGGCCGACGTAGTGCCGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15726979 GCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGACCGAGAGTTGTGGTAGCAGGATCGACA
195 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCG-CA
** * * * * * *
15727044 GCACACAAAAGGGGA-CCAAGTCGATCCTCGGCTTGCGCATCCAT-CCCTTTTGGCCGGCTGAGC
259 GCACGTAGAGGGGGACCCGA-CCGATCCTCGGCTTGCGCATCC-TGCCCCTCTGGCCGGCTGAGC
* * * * *
15727107 ACCTGCACACTCGTTTCGAGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGG
322 -CC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACAG
* * * * *
15727172 AGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCA
384 AGTTCA-TTCCAGTCTAAGATCAGACCGGA-C--GGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
15727237 TGTGCTGGTGGCACATTTTTCTT-TTCTAGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGAC
445 TGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCA-C-T--G-GC-TCG---GAGAACCTGAC
* *
15727301 CGGCGGCATCGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGG
500 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGG
* *
15727366 GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
564 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
15727431 TTAAAGAGCATTTCAGATTTTACAGGTTTACGGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
629 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
** * *
15727496 GTTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATG
694 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTATGCATG
* *
15727561 CGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTA
758 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTA
* * * * * *
15727626 AAAAATCACAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCT
823 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15727685 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15727750 TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCG
66 TTGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15727815 CAT-CCGTCTCTCTGGCCGACGTAGTGCCTGTCTGCCCACCCGCTCGCTCATTTCGTCAGTTGGC
131 CATCCCGTCTCTCTGGCCGACGTAGTG-C---C-GCCTACCCGCCCGCTCGTTTCGTCGGTTGGC
* *
15727879 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATC
191 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC
* * ** * * *
15727944 AGTAGCATGTAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGG-TGA
256 -GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
15728008 GCACCCGCATGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--
320 G--CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATAC
* * * **
15728070 TG-G---A---C---C---G----GACC--AAGGGTTACAACAGCACATGCTGGGCTCGGGCATG
382 AGAGTTCATTCCAGTCTAAGATCAGACCGGACGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
15728116 TGCTGGTGCCGTATTTTTCTTCGTCCGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGA
447 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---CT-G-G---C-TCGGAGAACCTGACCGG
* *
15728181 CGGCATTAGGGTTCCGACGATC--GGGGGCC--GGGGGTGTGCGCACATGATGTGTGATGGGTGC
503 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
15728242 TGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
568 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
15728307 AGAGCATTTGAGATTTTACAGGTTTGTTACCAGTAGCCATTAAAGTCCATTAAAGTGTCTAAAAT
633 AGAGCATTTGAGATTTTACAGGTTTG----C--T-GCCAGT--AG-CCATTAAAGTGTCTAAAAT
* * *
15728372 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCCGAATTTTTT-T
688 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAT
* * *
15728436 GCGCATGCCAAAAAAAATCCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
753 --GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAA
* * **
15728501 AATTTTAGAAAATCCCGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
816 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
15728566 T
881 T
* * * *
15728567 GCCATGAAACTTAACGTGAAGACTTAAAGGACCATTGTATGAATTTACAAGACATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
15728632 TTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15728697 CATCCCGTCTCTCTGGCCGGCATAGTGCATGCTTGCCCACCCGCCCGCTCGTTTCATCGGTTGGC
131 CATCCCGTCTCTCTGGCCGACGTAGTGC---C--GCCTACCCGCCCGCTCGTTTCGTCGGTTGGC
*
15728762 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTT---GT-------T-
191 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC
* * * * * * * *
15728816 GCAGTATGTAGAGGGGGACCCTACCAATCTTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAA
256 GCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG-A
* * * *
15728881 TGCCCGCAGGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTAAGCATACA
320 -GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACA
* * * * * *
15728946 GAGTTCATTCCCAGTCTAAGACCGGATCGGACCAAAGGTTGCAGCAGCACATGCTGGGCTTGGGC
383 GAGTTCATT-CCAGTCTAAGATCAGACCGGA-C--GGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15729011 ATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCAC
444 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
15729046 TATCGCCGAA
Statistics
Matches: 2699, Mismatches: 298, Indels: 243
0.83 0.09 0.08
Matches are distributed among these distances:
864 4 0.00
865 121 0.04
866 5 0.00
867 11 0.00
868 124 0.05
869 60 0.02
870 40 0.01
871 80 0.03
872 281 0.10
873 66 0.02
874 70 0.03
875 80 0.03
876 20 0.01
877 129 0.05
878 65 0.02
879 129 0.05
880 79 0.03
881 20 0.01
882 368 0.14
883 189 0.07
884 1 0.00
885 5 0.00
886 2 0.00
887 12 0.00
888 25 0.01
889 3 0.00
890 49 0.02
891 56 0.02
892 56 0.02
893 111 0.04
894 13 0.00
895 20 0.01
896 31 0.01
897 125 0.05
898 56 0.02
899 1 0.00
900 1 0.00
901 1 0.00
902 2 0.00
903 54 0.02
904 129 0.05
905 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGCAGC
ACGTAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTCAT
TCCAGTCTAAGATCAGACCGGACGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTCATCGGGGCACCACTGGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
Found at i:15727177 original size:26 final size:26
Alignment explanation
Indices: 15727141--15727190 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15727131 GACTTAGGCG
*
15727141 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCACTCCCAGTCTAAGCA
15727167 TACGGAGTTCACTCCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
15727191 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCA
Found at i:15728965 original size:26 final size:26
Alignment explanation
Indices: 15728913--15728965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15728903 GTTGACTTAG
* *
15728913 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15728939 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15728965 G
1 G
15728966 ACCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15729259 original size:26 final size:26
Alignment explanation
Indices: 15729230--15729282 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729220 GTTAACTTGG
* *
15729230 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGAAATTCATTCCCAATCTAA
* *
15729256 GCATACGAAATTCCTTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAATCTAA
15729282 G
1 G
15729283 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAATCTAA
Found at i:15730319 original size:26 final size:26
Alignment explanation
Indices: 15730283--15730335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15730273 GTTGACTTAG
* *
15730283 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15730309 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15730335 G
1 G
15730336 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15731768 original size:4 final size:4
Alignment explanation
Indices: 15731751--15731780 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
15731741 TCGATATAGT
*
15731751 GCCC GCCC GTCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
15731781 TCCTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:15731997 original size:26 final size:26
Alignment explanation
Indices: 15731961--15732013 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731951 GTTAACTTAG
*
15731961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15731987 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15732013 G
1 G
15732014 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15733568 original size:904 final size:900
Alignment explanation
Indices: 15731204--15733617 Score: 3314
Period size: 904 Copynumber: 2.7 Consensus size: 900
15731194 CACCATCCCT
* ** * * *
15731204 GGAGAACCTGATCGGTGGCATTGGGGTTCTAGCCATC-GGGGGG-C-GGGGGGTGTGCGCAAATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * * **
15731266 ATGTGCGATGTGTGCTGCTACTTAGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
** * *
15731331 CTCACACCCCCTTAAAGAGTGTTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
15731396 GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
* * * * *
15731461 TTTT-TGCACGCCAACAAAAATACAAGGATCACATCTACTGAGTTTGGGGCCAATATTCCTTTCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC-CAGTTTGGGGCCAAAACTCCTTACG
* * * *
15731525 AAAAAATGTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
325 -AAAAATTTTAAAAAATCCCGAACC-CTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
15731590 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15731655 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
453 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
15731720 TTGCGCATCCCGTCTCTCTGGTCGATATAGTGCCCGCCCGTCCGCCCGCCCGCCCGCCCGCTCCT
518 TTGCGCATCCCGTCTCTCTGGTCGATGTAGT----GCCCGT-----CGCCCGCCCGCCCGCTCGT
* * * * **
15731785 TTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCATTCTAAGATTGGACCAAACTGAGGGTTG
574 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAAACTGAGGGTTG
* * *
15731850 CGGTAGTTGGATTGGCAGCACGTAGAGGGGGACTCAGCCGATACCCGACTTGCACATCCCGCCAC
639 CGGCAGTAGGATTGGCAGCACGTAGAGGGGGACCCAGCCGATACCCGACTTGCACATCCCGCCAC
* * *
15731915 TCTGGCCGGCTGAGCACCCGTATGCTCATTTAGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
704 TCTGGCCAGCTGAGCACCCGTACGCTCATTTAGTGGGTTAACTTAGGCATACGGAGATCATTCCC
* * *
15731980 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACTAGATCGAGGATTGCGGCAGCACA
769 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGATTGCGACAGCACA
* * * * * *
15732045 TGTTGGGCTCGGCCATGGGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCG
834 TGCTAGGCTCGGCAATGGGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCG
15732110 CC
899 CC
* * * * ** *
15732112 GGTGAACGTGACCGGCGGCATTGGGTTTCCAGTGATCGGGGGGGCCGGGGGGGTGTGTGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATG
**
15732177 ATGTGCGATGGGTAATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
15732242 CTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
15732307 CAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTGAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
* * * *
15732372 TTTTGTGCATTCCAACAAAAATACAAGGCTCACATCTACCAAGTTTGGGGCCAAAACTTCTTATG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC-AGTTTGGGGCCAAAACTCCTTACG
* * * *
15732437 AGAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTTAAAATCGTGAGAAATAGAAAACGAGTC
325 A-AAAATTTTAAAAAATCCCGAACCCT-AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
15732502 GTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * ** *
15732567 TGGCATTGGAATGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATGGC
453 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * *
15732632 TTGCTTATCCCATCTCTCTGGCCGACGTAGTGCCCAGTCGCCCGCCCGCCCGTTTGTTTCGTCGG
518 TTGCGCATCCCGTCTCTCTGGTCGATGTAGTGCCC-GTCGCCCGCCCGCCCGCTCGTTTCGTCGG
* *
15732697 TTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTA
582 TTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGTA
* * * * * * * *
15732762 GGATT-GCTAGCACGTAGTGGGGGACCC-GATCTATCCCCGGCTTGCGCATCCCGCCCCTTTGGC
647 GGATTGGC-AGCACGTAGAGGGGGACCCAG-CCGATACCCGACTTGCACATCCCGCCACTCTGGC
* * * * * *
15732825 CAGCTGAGCATCCGTGCGCTCATTTCGTGGGTTGACTTAGGCATATGGAGATCATTTCCAGTCTA
710 CAGCTGAGCACCCGTACGCTCATTTAGTGGGTTAACTTAGGCATACGGAGATCATTCCCAGTCTA
* * * *
15732890 AGCATGCGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCACATGCTA
775 AGCATACGGAGTTCATTCCCAATCTAAGATCGGACT-AGACCGAGGATTGCGACAGCACATGCTA
* * *
15732954 GGCTCGGCAATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCTTCGTC
839 GGCTCGGCAATGGGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCC
*
15733016 GGAGAACCTGACTGACGGCATTGGGGTTCC-GACAATCGGGGGGGCCGGGGGGGTGTGCGCACAT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCAG-CAATCGGGGGGGCCGGGGGGGTGTGCGCACAT
* **
15733080 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * *
15733145 ACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * **
15733210 TGAAATGGGGACACTTTCTTAAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
* * * *
15733275 TTTTTGAGCATGCCAACAAAAAAACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCA-GTTTGGGGCCAAAACTCCTTAC
*
15733340 GAATAAATTTTAAAAAATCCCGAACCACTAAAAGTTTTAAAAATCACGAAAAATAGAAAACGAGT
324 GAA-AAATTTTAAAAAATCCCGAACC-CTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* * * *
15733405 CATCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAGTTTACAAGCCATAGAA
387 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
15733470 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGT
452 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * ** * *
15733535 TTTACGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCGTCCATCTGCCCGCTCGTTTCATCG
517 CTTGCGCATCCCGTCTCTCTGGTCGATGTAGTGCCCG-TCGCCCGCCCGCCCGCTCGTTTCGTCG
15733600 GTTGGCTTAGGCATACGG
581 GTTGGCTTAGGCATACGG
15733618 GGTCTGATCT
Statistics
Matches: 1320, Mismatches: 170, Indels: 36
0.87 0.11 0.02
Matches are distributed among these distances:
903 8 0.01
904 819 0.62
905 1 0.00
908 33 0.03
909 8 0.01
910 1 0.00
911 200 0.15
912 250 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GGAGAACCTGACCGACGGCATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGTTTGGGGCCAAAACTCCTTACGA
AAAATTTTAAAAAATCCCGAACCCTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGTCGATGTAGTGCCCGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGTAGGAT
TGGCAGCACGTAGAGGGGGACCCAGCCGATACCCGACTTGCACATCCCGCCACTCTGGCCAGCTG
AGCACCCGTACGCTCATTTAGTGGGTTAACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGATTGCGACAGCACATGCTAGGCTCGG
CAATGGGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCC
Found at i:15733662 original size:26 final size:26
Alignment explanation
Indices: 15733626--15733675 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15733616 GGGGTCTGAT
*
15733626 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15733652 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15733676 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15735242 original size:750 final size:756
Alignment explanation
Indices: 15734175--15735664 Score: 1970
Period size: 751 Copynumber: 2.0 Consensus size: 756
15734165 AATTCAGCTA
* * * *
15734175 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCTATTTTAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
15734240 TGGCTAACTGGCAGCCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATG
66 TGGCTAACTGGCAGCCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAATG
* **
15734305 GTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
131 GTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGCAC
*
15734370 ACACCCCCCGGCCCCCCCGATCGCCAGAACCAAAATGCCGCCGGTCAAGTTCTCCGGCAATGCTC
196 ACACCCCCCGGCCCCCCCGATCGCCAGAACCAAAATGCCGCCGGCCAAGTTCTCCGGCAATGCTC
* ** * *
15734435 CGACGACAGTGCCTTGGTGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTAC
261 CGACAACAGTGCCCCGGTGAAGAAAAAAGCGCCACCAACACATGCTCGAGCCCAGCATGTGCTAC
* *
15734500 CGCAACCCTCGATCCCGGGTTCG-TCTTAGACT-GGAATG-ACTCCGTCTGCTTAGACTGGGAAT
326 CGCAACCCTCGAT--CGAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * **
15734562 GAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGGCG
389 GAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCAGAGGGGCG
* * * *
15734627 GGATGCGCAAGTCAGGGATCGGTCGGGTCCC-CTTCTGCGTGCCACTGATCCTGCTGCAGCAACC
454 GGATGCACAAGCCAAGGATCGGTCGGG-CCCTCCTCTGCGTGCCACTGATCCTGCTGCAGCAACC
* * * *
15734691 CT-AGGTCCCATCTGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACTGAC-AAA-A-
518 CTCA-GTCCCATCTAATCTTAGACTAGGAATGAACCCCGTATACCTAAGCCAACCGACAAAACAG
* *
15734752 T-GAGCGGGCGGGC-GG-GCACTACGTCGGCCAGAGAGGCGGGATGCGCAACCCATGGATCGATA
582 TGGAGCGGGCGGGCAGGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAACCCACGGATCGATA
* * * *
15734814 GGGTGGTATGTGGGTTTAGGAACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTC
647 GGATGGTAGGTGGGTTTAGGAACATCTTCATATTTCT-CTATGCCAATGACAATTTTATGGCTTC
15734878 TAAATTCATACAATGGTCCCCTAATGGCTACTGGCAGCAAACCTGT
711 TAAATTCATACAATGGTCCCCTAATGGCTACTGGCAGCAAACCTGT
*
15734924 AAAACTCGAAGTGTACAAGATTTTGTGATCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
1 AAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
15734989 TGGCT-ACTGGCAG-CAAACCTGTAAAATCTCAAATGCCCTTTAA-GGGGTGTGAGTTCTCGA-G
66 TGGCTAACTGGCAGCCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAATG
* * *
15735050 GTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACTAGCACCCATCGCACATAATGTGCA
131 G-TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGCA
* ** ** * *
15735115 CACACCGCCCCCCCGGCCCCCCTGATCGCTGGAACCCCAATGCCAG-CGGCCAGGTTCTCCGGCG
195 CACA----CCCCCCGGCCCCCCCGATCGCCAGAACCAAAATGCC-GCCGGCCAAGTTCTCCGGCA
* ** *
15735179 ATGGTCCGACAATGGTGCCCCGGTGAAGAAAAAAGTGCCACCAACACATGCTCGAGCCCAGCATG
255 ATGCTCCGACAACAGTGCCCCGGTGAAGAAAAAAGCGCCACCAACACATGCTCGAGCCCAGCATG
** * * *
15735244 TGCTGTCGTAACCCTCGATCTAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
320 TGCTACCGCAACCCTCGATCGAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
15735309 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGTCGGCTAGAGG
385 GAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCAGAGG
* ** * *
15735374 GGTGGGATGCACAAGCCAAGGATCGGTCGGGCCCTCCTCTGCGTGCTGCTGATCCTGCTGCTGCC
450 GGCGGGATGCACAAGCCAAGGATCGGTCGGGCCCTCCTCTGCGTGCCACTGATCCTGCTGCAGCA
**** * * *
15735439 ACCCTCAGTTTGGTCTAATCTTAGACTAGGAATGAACTCTGTCTACCTAAGCCAACCGACAAAAC
515 ACCCTCAGTCCCATCTAATCTTAGACTAGGAATGAACCCCGTATACCTAAGCCAACCGACAAAAC
* * *
15735504 GAGTGGGCGGGCGGGCGGGCGGGCAGGTAAGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGC
580 -AGT------G-GAGCGGGCGGGCAGG--AGCACTACGTCGGCCAGAGAGACGGGATGCGCAACC
* * *
15735569 CACGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTGTGCCAATGATAAT
635 CACGGATCGATAGGATGGTAGGTGGGTTTAGGAACATCTTCATATTTCTCTATGCCAATGACAAT
*
15735634 TTTATGGCTTGTAAATTCATACAATGGTCCC
700 TTTATGGCTTCTAAATTCATACAATGGTCCC
15735665 TTAAGCCATC
Statistics
Matches: 635, Mismatches: 78, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
745 2 0.00
746 77 0.12
747 29 0.05
748 14 0.02
749 74 0.12
750 127 0.20
751 175 0.28
752 4 0.01
754 1 0.00
755 1 0.00
763 11 0.02
764 2 0.00
766 1 0.00
767 117 0.18
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (756 bp):
AAAACTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTAACTGGCAGCCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAATG
GTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGCAC
ACACCCCCCGGCCCCCCCGATCGCCAGAACCAAAATGCCGCCGGCCAAGTTCTCCGGCAATGCTC
CGACAACAGTGCCCCGGTGAAGAAAAAAGCGCCACCAACACATGCTCGAGCCCAGCATGTGCTAC
CGCAACCCTCGATCGAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTAAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCAGAGGGGCGGG
ATGCACAAGCCAAGGATCGGTCGGGCCCTCCTCTGCGTGCCACTGATCCTGCTGCAGCAACCCTC
AGTCCCATCTAATCTTAGACTAGGAATGAACCCCGTATACCTAAGCCAACCGACAAAACAGTGGA
GCGGGCGGGCAGGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAACCCACGGATCGATAGGAT
GGTAGGTGGGTTTAGGAACATCTTCATATTTCTCTATGCCAATGACAATTTTATGGCTTCTAAAT
TCATACAATGGTCCCCTAATGGCTACTGGCAGCAAACCTGT
Found at i:15735309 original size:26 final size:26
Alignment explanation
Indices: 15735273--15735325 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15735263 CTAGTTCGAT
*
15735273 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15735299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15735325 C
1 C
15735326 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15737088 original size:26 final size:26
Alignment explanation
Indices: 15737052--15737104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15737042 CAAGTTTGAT
* *
15737052 CTTAGACTGGGAATGACCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15737078 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15737104 C
1 C
15737105 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.