Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 1 of 64
Found at i:6917 original size:45 final size:45
Alignment explanation
Indices: 5559--6927 Score: 921
Period size: 45 Copynumber: 30.4 Consensus size: 45
5549 GCGTGACACT
* * * *
5559 AGCATGTGCTGATGGTGTTCGAGGCAACCGCCCTCACTAA-GGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * *
5603 TGGCATGTACCGATGGTGGTCGAGGCAATCGCCCGTACCAA-GGCTT
1 -AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-C
* * * * * * * * *
5649 GGCATGTGCCGATGGTGTTTGACGTAACTGTCTGCACCAGGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * *
5694 ATCTTGTGCC-ATTGGTGTTCGACGCAACTGCCCGCACCAGGGGCC
1 AGCATGTGCCGA-TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * *
5739 ATCTTGTGCCGTTGGTGGTCAAGGCAACCGCCCGTACCAAGGGTC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * *
5784 ATCTTGTGCCGATGGTGGTCGAGGCAACTGTCCGCACCAAGGGTC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* *
5829 -GTCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTC
1 AG-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * ** *
5874 GGCTTGTGCAGATGGTGGTCGAGGCAACCACCATCACCAGGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
*** * * ** *
5919 ATTTTTTGCCTATGGTGGTCGAGGCAAGAGCCCGTACCAAGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * ** *
5964 GGCTTGTGTCGATGGTGGTCGAGGCAACTACCCGCACCAGGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * ** * * *
6009 ATCTTTTATCGATGGTGGTCGAGGCAACCACCCGCACTAAGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* **
6054 AGCATGTGTCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * ** * *
6099 -GACTTGTTCCGATGGTTCTCGAGGTAACCGCCCGCACCAGGGGCC
1 AG-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * * * *
6144 ATCTTCTGTCGATGGTGGTCAAGGTAACCGCCCGTACCAAGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * * *
6189 AGCATGTACTGATGGTGTTCGAGGTAACCGCCCACACGAAGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * *
6234 AGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * *
6279 AGCATGTGCTGATGGTGTTCGACGTAACCGCCCACACCAGGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* ** * * * *
6324 A-TATTGTGCCGATGGTGGTTAAGGCAACCACCTGCACCAAGGACT
1 AGCA-TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * *
6369 GGC-TAGTGCCGATGGTGCTTGAGGCAATCGCCCTCACCAAGGCCC
1 AGCAT-GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * ** *
6414 GGCACGTGCCGATGGTGTTCAAGGCAACCGCCTACACCAGGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
*** * * * *
6459 ATTTTATACCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* ** * * * *
6504 AGCATGTGCCGATGGTGTTCGATACAACCGCTCGCACTAGGGGCG
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * * * *
6549 ATCTTGTGTCGATGGTGTTCGAGGCAACCACCCACACCAAGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * *
6594 -G-ACTGGTGCCAATGGTGTTCGAGGCAACCGCCTGCACCAA-GACTC
1 AGCA-T-GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-C
* * * *
6639 -GTCATGTACCGATGGTGGTTGAGGCAACCGCCTGCACCACA-GCCC
1 AG-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGGCC
* ** * * ** * *
6684 AGCTTGTTTCGATGGTGTTCGATGCAACCGCCTACACCAGGGGCT
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * ** * *
6729 ATCTTGTGCCGATGATGGTCGAGGCAATTGCCCGCACCATGGGTC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * *
6774 GGCTTGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
* * * *
6819 AGCATATGTCGATGGTGATCGAGGCAACCGCCTGCACC-AGGGCCC
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CC
* ** *
6864 AGCGTGTGCCGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGG-C
1 AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCC
* * *
6909 AGCCTGTGCCAATGATGGT
1 AGCATGTGCCGATGGTGGT
6928 TGATGCATGT
Statistics
Matches: 1031, Mismatches: 270, Indels: 46
0.77 0.20 0.03
Matches are distributed among these distances:
44 11 0.01
45 1006 0.98
46 9 0.01
47 5 0.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
AGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
Found at i:11076 original size:43 final size:44
Alignment explanation
Indices: 11014--11129 Score: 141
Period size: 43 Copynumber: 2.7 Consensus size: 44
11004 ACCAGGGGGC
*
11014 CATCTTATGCCGATG-GTGGTCGAGGCAACC-CCGCACCAAGGGT
1 CATCTTGTG-CGATGAGTGGTCGAGGCAACCTCCGCACCAAGGGT
*
11057 CATCTTGTGCGATGAGTGGTCGAAGCAACCTCCGCACCAAGGGT
1 CATCTTGTGCGATGAGTGGTCGAGGCAACCTCCGCACCAAGGGT
* * *
11101 C-GCTTGTGCAGAT-AGTGGTCTAGGTAACC
1 CATCTTGTGC-GATGAGTGGTCGAGGCAACC
11130 GCCTGCACTA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 5 0.08
43 42 0.66
44 17 0.27
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (44 bp):
CATCTTGTGCGATGAGTGGTCGAGGCAACCTCCGCACCAAGGGT
Found at i:11330 original size:313 final size:316
Alignment explanation
Indices: 10703--11356 Score: 743
Period size: 313 Copynumber: 2.1 Consensus size: 316
10693 GCCCAGTATG
* * * *
10703 TGCCGCATGGTGTTCGACGCAACGCCTGCACCAGGGGCTATCTTGTGTCGATGGTGGTCGAGGCA
1 TGCCG-ATGGTGGTCGAGGCAAC-CCCGCACCAGGGGCTATCTTGTGTCGATGGTGGTCGAAGCA
* *
10768 ACCGCCCGCACAAGGGCCAGCTTGTGCTGATTGTGCTCGAGGCAACCGCCCGCACTGGGGCCATT
64 ACCGCCCGCACAAGGGCCAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACTGGGGCCATT
* * *
10833 TTCTATCGATGGTGGTCGAGGCAAGGAGCTTCGTACCAAGGGTCGGCTTGTTGCAGTAGTGCTCG
129 TTCTATCGATGGTGGTCGAGGCAAGCAGCTTCGTACCAAGGGCCGGCTTGATGCAGTAGTGCTCG
* * * * * * * *
10898 AGGCAAACTGCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTCGAGGTAACTGCCCGTACCAA
194 AGGCAAACCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACAGCCCGTACCAA
* * * * * * * *
10963 GGTCCAAAATGTGCCGATGGTTGTTCGATGTAATCGCCCGTACCAGGGGGCCATCTTA
259 GGGCCAAAATGTACCGATGGTTGCTCGAGGAAACCACCCGCACCAGGGGGCCATCTTA
*
11021 TGCCGATGGTGGTCGAGGCAACCCCGCACCAAGGG-TCATCTTGTG-CGATGAGTGGTCGAAGCA
1 TGCCGATGGTGGTCGAGGCAACCCCGCACCAGGGGCT-ATCTTGTGTCGATG-GTGGTCGAAGCA
* * * * * *
11084 ACC-TCCGCACCAAGGGTC-GCTTGTGCAGATAGTGGTCTAGGTAACCGCCTGCACTAGGGGCCA
64 ACCGCCCGCA-CAAGGGCCAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACT-GGGGCCA
** * * *
11147 TTTTCTA-CAGATGGTGGTCGAGTTAA-CCGC-TCGTACCAAGGGCCGGCTT-ATGCCGATGGTG
127 TTTTCTATC-GATGGTGGTCGAGGCAAGCAGCTTCGTACCAAGGGCCGGCTTGATGCAG-TAGTG
* * * *
11208 GTCGAGG-TAACCGCCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGAGCCCGTA
190 CTCGAGGCAAACCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACAGCCCGTA
* *** *
11272 CCAAGGGCGAGCTTGTACCGATGCG-TGCTCGAGGAAACCACCCGCACCAGGGGGCCATCTTC
255 CCAAGGGCCAAAATGTACCGATG-GTTGCTCGAGGAAACCACCCGCACCAGGGGGCCATCTTA
11334 TGCCGATGGTGGTCGAGGCAACC
1 TGCCGATGGTGGTCGAGGCAACC
11357 GTCCGTACCA
Statistics
Matches: 283, Mismatches: 46, Indels: 19
0.81 0.13 0.05
Matches are distributed among these distances:
313 120 0.42
314 29 0.10
315 45 0.16
316 69 0.24
317 15 0.05
318 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (316 bp):
TGCCGATGGTGGTCGAGGCAACCCCGCACCAGGGGCTATCTTGTGTCGATGGTGGTCGAAGCAAC
CGCCCGCACAAGGGCCAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACTGGGGCCATTTT
CTATCGATGGTGGTCGAGGCAAGCAGCTTCGTACCAAGGGCCGGCTTGATGCAGTAGTGCTCGAG
GCAAACCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACAGCCCGTACCAAGG
GCCAAAATGTACCGATGGTTGCTCGAGGAAACCACCCGCACCAGGGGGCCATCTTA
Found at i:11930 original size:45 final size:45
Alignment explanation
Indices: 10270--11964 Score: 839
Period size: 45 Copynumber: 37.5 Consensus size: 45
10260 CGAGGCATGT
* * * * * * *
10270 GCCCACACCAAGGCCCGGCATGTGCCGATAGTGTTTGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * *
10315 GCCCGCACCAGGGGCCATCTTCTACCGATGGTGCTCAAGGTAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *
10360 GCCCGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * *
10405 GCCCGTAGCAAGGTCCAGCACGTGCCGATGGTGTTTGAAGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
10450 G-CCGCACCAGGGGCCAGCATGTGTCGATGGTGTTCGACGGCTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA-GGC-AACC
* * * * * * **
10496 ACCTGGCCACCAGGGGCCATCTTTCTG-CGAAGGTGGTCGAGGCAAGA
1 GCC-CG-CACCAAGGGCCAGC-TTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
10543 GCCCACACCAAGGACCTACCTGGT-TCGATGGTGCTCGAGGCAATC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** ** * * *
10588 GCCCACATGAA-GGCCTAGCACGTG-CGATGGGTGTTCGAAGGGAACT
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGAT-GGTGGTCG-AGGCAACC
* * * **
10634 G-CCACACC-TGTAGGCCA-ATATGTGCCG-TTATGGTCGAGGCAATCC
1 GCCCGCACCAAG--GGCCAGCT-TGTGCCGATGGTGGTCGAGGCAA-CC
* * *
10679 GGCTCGCACCAAGGGCCCAG-TATGTGCCGCATGGTGTTCGACGCAA-C
1 -GCCCGCACCAAGGG-CCAGCT-TGTGCCG-ATGGTGGTCGAGGCAACC
* * * * *
10726 GCCTGCACCAGGGGCTATCTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *
10771 GCCCGCA-CAAGGGCCAGCTTGTGCTGATTGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** ** * ** **
10815 GCCCGCA-CTGGGGCCATTTTCTATCGATGGTGGTCGAGGCAAGGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAA-CC
* * * * * * * *
10860 GCTTCGTACCAAGGGTCGGCTTGTTGCAG-TAGTGCTCGAGGCAAACT
1 GC-CCGCACCAAGGGCCAGCTTG-TGCCGATGGTGGTCGAGGC-AACC
* * * * * * * * *
10907 GCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTCGAGGTAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *** * * * *
10952 GCCCGTACCAAGGTCCAAAATGTGCCGATGGTTGTTCGATGTAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGG-TGGTCGAGGCAACC
* * * *
10998 GCCCGTACCAGGGGGCCATCTTATGCCGATGGTGGTCGAGGCAA-C
1 GCCCGCACCA-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *
11043 -CCCGCACCAAGGGTCATCTTGTG-CGATGAGTGGTCGAAGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATG-GTGGTCGAGGCAACC
* * * * * *
11087 -TCCGCACCAAGGGTC-GCTTGTGCAGATAGTGGTCTAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * * **
11130 GCCTGCACTAGGGGCCATTTTCTACAGATGGTGGTCGAGTTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
11175 GCTCGTACCAAGGGCCGGCTTATGCCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * **
11220 GCCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
11265 GCCCGTACCAAGGGCGAGCTTGTACCGATGCGTGCTCGAGGAAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATG-GTGGTCGAGGCAACC
* * * *
11311 ACCCGCACCAGGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCA-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
11357 GTCCGTACCAAGGCCCAGCATT-CGCCAATTGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGC-TTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
11402 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * * * * *
11447 GCTTGCACCAAGGCCCAGCATGTGCCGATGGCGTTC-ACCGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA-GGCAACC
* * * * * * * *
11492 GCTCGTATCAGGGGCCATCTTGTGCCGATAGTGCTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * ** ** *
11537 GCTCACACCAAGGTCCGGCACGTATCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
11582 GCCTGCACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * **
11627 GCCCGCACCAAGGCCCAGCATATGCTGATAGTGTTCGTCGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *
11672 GCCTGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
11717 ACCCACACCAAGGGCC-GACTGGTGTCGATGGTGTTCGAGGCAACA
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
11762 ACCCACACCAA-GGCTCGGCATGTGCTGATGGTGGTTGAGGTAACC
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
11807 GCCCGTACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
11852 GCCCGCACC-AGGGCCCATCTTGTACCGATGGTGGTCGAAGTAATC
1 GCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
11897 GCCTGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTGAGGTAAGC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
**
11942 GCCTACACCAA-GGCCTAGCTTGT
1 GCCCGCACCAAGGGCC-AGCTTGT
11965 CCTAATGGCG
Statistics
Matches: 1229, Mismatches: 369, Indels: 104
0.72 0.22 0.06
Matches are distributed among these distances:
42 5 0.00
43 41 0.03
44 169 0.14
45 752 0.61
46 136 0.11
47 79 0.06
48 9 0.01
49 35 0.03
50 3 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
Found at i:13084 original size:159 final size:158
Alignment explanation
Indices: 12789--13285 Score: 579
Period size: 159 Copynumber: 3.1 Consensus size: 158
12779 TAAGCATATG
* * * * *
12789 GAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATAGACAGAACGC
1 GAGTTCATT-CCATGTCTAAGA-CTAGCCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * *
12853 AGGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCAC
64 AGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCAC
*
12918 GCCCGTTTCGTGGGTTGGCTTAGGCATACA
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACA
**
12948 GAGTTCATTCCATGTCTAAGACCTAGCCAGATCGAGGGTT-CTGGCAGTGGGATCGACAGCACGC
1 GAGTTCATTCCATGTCTAAGA-CTAGCCAGATCGAGGGTTGC-GGCAGCAGGATCGACAGCACGC
** * * * * *
13012 AGAGGGGGACCGGGTCGATCCCCGGCTTGCATATTTTGCCTCTTCGATCGGCTCAACGCCTGTAC
64 AGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCAC
* **
13077 GCTCGTTTCGTGAGTTAACTTAGGCATACA
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACA
* * * *
13107 GAGTTCATTCC-TAGTCTAAGATTAGACCGAAAT-GAGGGTTGCGGTAGCAGGATCGACAGCACA
1 GAGTTCATTCCAT-GTCTAAGACTAG-CC-AGATCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * * *
13170 CAGAAGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATTGACTGAGCGCCCGCA
63 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCA
*
13235 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
*
13266 GAGTTCACTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
13286 CATACGGAGT
Statistics
Matches: 282, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
158 8 0.03
159 269 0.95
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACTAGCCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:13295 original size:26 final size:26
Alignment explanation
Indices: 13259--13311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13249 GTTGGCTTAG
13259 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
13285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
13311 G
1 G
13312 ATGGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:13520 original size:12 final size:12
Alignment explanation
Indices: 13503--13533 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13493 ATTGAGGGTG
13503 TGGCAGCAGGAC
1 TGGCAGCAGGAC
13515 TGGCAGCAGGAC
1 TGGCAGCAGGAC
13527 TGGCAGC
1 TGGCAGC
13534 GACATCGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.42, T:0.10
Consensus pattern (12 bp):
TGGCAGCAGGAC
Found at i:21214 original size:45 final size:45
Alignment explanation
Indices: 21119--21218 Score: 114
Period size: 45 Copynumber: 2.2 Consensus size: 45
21109 TTGGGGCATG
* * *
21119 TGCCCGCACCAAGGGTCGACACATGCCGATACTGGTCGATGTAAC
1 TGCCCGCACCAAGGGCCGACACATGCCGATACTGGTCGAGGCAAC
* **
21164 TGCCCGCACCAAGGGCC-AGCATATGCCGATGGTGGTCGAGGCAA-
1 TGCCCGCACCAAGGGCCGA-CACATGCCGATACTGGTCGAGGCAAC
21208 TCGCCCGCACC
1 T-GCCCGCACC
21219 GGATCGAGGC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.04
45 45 0.96
ACGTcount: A:0.22, C:0.34, G:0.29, T:0.15
Consensus pattern (45 bp):
TGCCCGCACCAAGGGCCGACACATGCCGATACTGGTCGAGGCAAC
Found at i:21287 original size:45 final size:45
Alignment explanation
Indices: 21233--22462 Score: 619
Period size: 45 Copynumber: 27.3 Consensus size: 45
21223 CGAGGCATGT
* * * *
21233 GCCCACACCAAGGCCCAGCATGTTTCGATGGTGTTCGAGGCAGCC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
** * * * * ** * * **
21278 GCTTGCACCAGGGGCCATCTTTTACCGATGATGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * ** *
21323 GCCCGCACTAAGGGTCAGCTTGTATCGATGGTACTAGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
** * * * *
21368 GCTTGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * *
21413 ACCCGCACCAA-GGCTCAGCATGTGCCAATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGC-CAGCATGTGTCGATGGTGTTCGAGGCAACC
* * *
21458 GCCCACACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * * **
21503 GCCCACACCAAGGGCCACCTTTTGCCAATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * *
21548 GCCTGCACCAAAGGCCAGCTTGTGCCGATGGTGCTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* ** * * * *
21593 ACCCGCATGAA-GGCTAGCACGTGTCGATGGTGTTTGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * *
21637 GCCCGCACCGAGGCCCAGCATGTGCCAATGGTGGTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* ** * * *
21682 GCCCACACCAA-GGCTCAGCATGTGTCGATCATGTTCAACGCAATC
1 GCCCGCACCAAGGGC-CAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * *
21727 GCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * *
21772 GCCCGCACCAAGGGTCAACTTGTGCCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * *** * ** * **
21817 ACCCGCAACAGGGGCCATTTTCTACCGATGGTGGTT-GAGGTAAGA
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGT-GTTCGAGGCAACC
* * * * * **
21862 GCCCGCACCAAGGGTCGGCTTGTGCCGATGGTGCTT-AAGGTTACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTG-TTCGAGGCAACC
* * * * *
21907 ACCCGTACCAA-GGCCTAGCACGTGACGATGATGTTCGAGGCAACC
1 GCCCGCACCAAGGGCC-AGCATGTGTCGATGGTGTTCGAGGCAACC
** * * * *
21952 GCATGCACCAAGGCCCGGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * *
21997 GTCTGCACC-AGAGGCCATCTTGTGCCGATAGTGGTCGAGGCAACC
1 GCCCGCACCAAG-GGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * * * * * *
22042 ACCCGTACTAGGGGCCATCTTCTGCCGATGGTGGTCGAAGCAACT
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * *
22087 GCTCGCACTAAGGCCCAGCATGTGCCGATAGTGTTCGATGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
** * * * * * *
22132 GCCCATACCAGGGGCTATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * *
22177 ACCCGTACCAAGGGCCGGC-TGGTGTCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCAT-GTGTCGATGGTGTTCGAGGCAACC
* * * * ** * * *
22222 GCCCACACCAA-GACTCGGCATATACCGATGGTGGTCAAGGCAATC
1 GCCCGCACCAAGGGC-CAGCATGTGTCGATGGTGTTCGAGGCAACC
** * * * * * *
22267 ATCAGCACCATGGCCCAACATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * * *
22312 GCTCGCAGCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
* * * * * * *
22357 GCCCGCACCAATGGCCGGCGTGTGCCAATGGTGGTCGAGGCAATCA
1 GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAA-CC
* * * * **
22403 G-CCGCACC-AGGGCCCAGCTTATGCCGATGGTGGTCGAGGCAAGT
1 GCCCGCACCAAGGG-CCAGCATGTGTCGATGGTGTTCGAGGCAACC
*
22447 GCCCGTACCAAAGGGC
1 GCCCGCACC-AAGGGC
22463 AACCTGTACC
Statistics
Matches: 889, Mismatches: 275, Indels: 41
0.74 0.23 0.03
Matches are distributed among these distances:
44 52 0.06
45 816 0.92
46 17 0.02
47 4 0.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
Found at i:21487 original size:135 final size:134
Alignment explanation
Indices: 21233--22484 Score: 831
Period size: 135 Copynumber: 9.3 Consensus size: 134
21223 CGAGGCATGT
* * * ** * * ** * * *
21233 GCCCACACCAAGGCCCAGCATGTTTCGATGGTGTTCGAGGCAGCCGCTTGCACCAGGGGCCATCT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGCCAGCA
* * * * ** * * * ** ** *
21298 TTTACCGATGATGGTCGAGGCAAGAGCCCGCACTAAGGGTCAGCTTGTATCGATGGTACTAGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
21363 CAACC
130 CAACC
** * * * *
21368 GCTTGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCTCAGCA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGC-CAGCA
* * * *
21433 TGTGCCAATGGTGTTCGAGGCAACCGCCCACACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
21498 CAACC
130 CAACC
* * * * ** * *
21503 GCCCACACCAAGGGCCACCTTTTGCCAATGGTGGTCGAGGCAAGAGCCTGCACCAAAGGCCAGCT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGCCAGCA
* * * ** * * ** * * *
21568 TGTGCCGATGGTGCTCGAGGCAATCACCCGCATGA-AGGCTAGCACGTGTCGATGGTGTTTGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
*
21632 TAACC
130 CAACC
* * * * * *
21637 GCCCGCACCGAGGCCCAGCATGTGCCAATGGTGGTCGAGGCAACTGCCCACACCAAGGCTCAGCA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGC-CAGCA
* ** * * * * *
21702 TGTGTCGATCATGTTCAACGCAATCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
21767 CAACC
130 CAACC
* * * * * * ***
21772 GCCCGCACCAAGGGTCAACTTGTGCCGATGGTGGTCAAGGCAACCACCCGCAACAGGGGCCATTT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGCCAGCA
* * * ** * * * * **
21837 TCTACCGATGGTGGTT-GAGGTAAGAGCCCGCACCAAGGGTCGGCTTGTGCCGATGGTGCTTAAG
65 TGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAG
**
21901 GTTACC
129 GCAACC
* * ** * * * ** *
21907 ACCCGTACCAA-GGCCTAGCACGTGACGATGATGTTCGAGGCAACCGCATGCACCAAGGCCCGGC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG-CCAGC
* * * * * *
21971 ATGTGCCGATGGTGTTCGATGCAACCGTCTGCACCAGAGGCCATCTTGTGCCGATAGTGGTCGAG
64 ATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAG
22036 GCAACC
129 GCAACC
* * * * * * * * * *
22042 ACCCGTACTAGGGGCCATCTTCTGCCGATGGTGGTCGAAGCAACTGCTCGCACTAAGGCCCAGCA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG-CCAGCA
* * * ** * *
22107 TGTGCCGATAGTGTTCGATGTAACCGCCCATACCAGGGGCTATCTTGTGCCGATGGTGGTCGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
22172 CAACC
130 CAACC
* * * * * * * * * *
22177 ACCCGTACCAAGGGCCGGCTGGTGTCGATGGTGTTCAAGGCAACCGCCCACACCAAGACTCGGCA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGC-CAGCA
* * * * * ** * * * * * * *
22242 TATACCGATGGTGGTCAAGGCAATCATCAGCACCATGGCCCAACATGTGCCGATGGTGTTCGATG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGG
22307 CAACC
130 CAACC
* * * * * * *
22312 GCTCGCAGCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAATGGCCGGCG
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA-GGCCAGCA
* * * * *
22377 TGTGCCAATGGTGGTCGAGGCAATCAG-CCGCACCAGGGCCCAGCTTATGCCGATGGTGGTCGAG
65 TGTGCCGATGGTGTTCGAGGCAA-CCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAG
**
22441 GCAAGT
129 GCAACC
* * * * *
22447 GCCCGTACCAAAGGG-CAACCTGTACCGATGATGGTCGA
1 GCCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGA
22485 TGCATGTGCC
Statistics
Matches: 845, Mismatches: 258, Indels: 28
0.75 0.23 0.02
Matches are distributed among these distances:
133 5 0.01
134 114 0.13
135 705 0.83
136 21 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (134 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCAGCAT
GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
AACC
Found at i:24445 original size:45 final size:45
Alignment explanation
Indices: 24367--24492 Score: 126
Period size: 45 Copynumber: 2.8 Consensus size: 45
24357 AGGGTGAGTA
* * * ** *
24367 GGTGCCGATGGTGGTTGGGGCATGTGCCAGCACCAAGGGCCAACG
1 GGTGCCAATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAACG
* * * *
24412 GGTGCCGATGGTGGTCGATGCGACTGCCCGCACCAAGGGCCAGCG
1 GGTGCCAATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAACG
* * * *
24457 TGTGTCAATGGTGGTCGAGGCAACCGCCCGGACCAA
1 GGTGCCAATGGTGGTCGAGGCAACTGCCCGCACCAA
24493 ATCGAGGCAT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.18, C:0.28, G:0.39, T:0.15
Consensus pattern (45 bp):
GGTGCCAATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAACG
Found at i:24873 original size:16 final size:15
Alignment explanation
Indices: 24850--24907 Score: 52
Period size: 16 Copynumber: 4.1 Consensus size: 15
24840 ATTTTATATG
24850 TATT-TTTATTTATC
1 TATTATTTATTTATC
*
24864 TAATTATTTACTTATC
1 T-ATTATTTATTTATC
*
24880 TGTTA-TTA-TTAT-
1 TATTATTTATTTATC
*
24892 TATTTTTTATTTATC
1 TATTATTTATTTATC
24907 T
1 T
24908 TATAATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 8 0.23
15 7 0.20
16 10 0.29
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTTATTTATC
Found at i:24900 original size:27 final size:28
Alignment explanation
Indices: 24870--24924 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
24860 TATCTAATTA
*
24870 TTTACTTATCTGT-TATTATTATT-ATTT
1 TTTACTTATCT-TATAATATTATTGATTT
*
24897 TTTATTTATCTTATAATATTATTGATTT
1 TTTACTTATCTTATAATATTATTGATTT
24925 ATTTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.04
27 19 0.79
28 4 0.17
ACGTcount: A:0.25, C:0.05, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTACTTATCTTATAATATTATTGATTT
Found at i:24932 original size:43 final size:42
Alignment explanation
Indices: 24837--24932 Score: 99
Period size: 43 Copynumber: 2.3 Consensus size: 42
24827 TCTTTTTCAT
*
24837 TTTATTTTA-TATGTATTTTTATTTATCTAATTATTTACTTA
1 TTTATTTTATTATGTATTTTTATTTATCTAATAATTTACTTA
* * *
24878 TCTGTTATTATTAT-TATTTTTTATTTATCTTATAATATTA-TTGA
1 TTTATT-TTATTATGTA-TTTTTATTTATCTAATAAT-TTACTT-A
24922 TTTATTTTATT
1 TTTATTTTATT
24933 TTTCTAATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
41 4 0.09
42 5 0.11
43 27 0.61
44 8 0.18
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (42 bp):
TTTATTTTATTATGTATTTTTATTTATCTAATAATTTACTTA
Found at i:25880 original size:6 final size:6
Alignment explanation
Indices: 25860--25936 Score: 56
Period size: 6 Copynumber: 13.5 Consensus size: 6
25850 TTAATATTCA
* * * *
25860 TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT TTATT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT
* *
25906 TTTTAT TTTTA- -TTTAT TTTCAC TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
25937 GTTTCATTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
4 4 0.07
5 10 0.18
6 39 0.71
7 2 0.04
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:25882 original size:17 final size:16
Alignment explanation
Indices: 25860--25917 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
25850 TTAATATTCA
*
25860 TTTTATCTTTATTTTAT
1 TTTTATATTT-TTTTAT
*
25877 TTTTATTTTTGTTTTACT
1 TTTTATATTT-TTTTA-T
*
25895 TTTCTTTATTTTTTTAT
1 TTT-TATATTTTTTTAT
25912 TTTTAT
1 TTTTAT
25918 TTATTTTCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 2 0.06
17 18 0.53
18 9 0.26
19 5 0.15
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTATATTTTTTTAT
Found at i:25884 original size:22 final size:22
Alignment explanation
Indices: 25845--25936 Score: 71
Period size: 22 Copynumber: 4.1 Consensus size: 22
25835 TTTTTTTAGG
* * *
25845 TTTATTTAATATTCATTTTATC
1 TTTATTTTATTTTCATTTTATT
*
25867 TTTATTTTATTTTTATTTT-TGT
1 TTTATTTTATTTTCATTTTAT-T
* **
25889 TTTACTTTTCTTTATTTTTTTATT
1 TTTA-TTTTATTT-TCATTTTATT
25913 TTTA-TTTATTTTCACTTTTATT
1 TTTATTTTATTTTCA-TTTTATT
25935 TT
1 TT
25937 GTTTCATTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
21 2 0.04
22 35 0.62
23 7 0.12
24 11 0.20
25 1 0.02
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTCATTTTATT
Found at i:25908 original size:11 final size:10
Alignment explanation
Indices: 25867--25924 Score: 57
Period size: 11 Copynumber: 5.8 Consensus size: 10
25857 TCATTTTATC
25867 TTTATTTTATT
1 TTTATTTT-TT
25878 TTTATTTTTGT
1 TTTATTTTT-T
* *
25889 TTTACTTTTC
1 TTTATTTTTT
25899 TTTA--TTTT
1 TTTATTTTTT
*
25907 TTTATTTTTA
1 TTTATTTTTT
25917 TTTATTTT
1 TTTATTTT
25925 CACTTTTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 7 0.17
10 16 0.40
11 17 0.43
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:25909 original size:18 final size:18
Alignment explanation
Indices: 25871--25924 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
25861 TTTATCTTTA
* *
25871 TTTTATTTTTATTT-TTG
1 TTTTACTTTTATTTATTT
*
25888 TTTTACTTTTCTTTATTT
1 TTTTACTTTTATTTATTT
*
25906 TTTTATTTTTATTTATTT
1 TTTTACTTTTATTTATTT
25924 T
1 T
25925 CACTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 12 0.39
18 19 0.61
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTACTTTTATTTATTT
Found at i:25930 original size:29 final size:30
Alignment explanation
Indices: 25876--25936 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
25866 CTTTATTTTA
*
25876 TTTTTATTTTTGTTTTACTTTTC-TTTATT
1 TTTTTATTTTTGATTTACTTTTCTTTTATT
25905 TTTTTATTTTT-ATTTA-TTTTCACTTTTATT
1 TTTTTATTTTTGATTTACTTTT--CTTTTATT
25935 TT
1 TT
25937 GTTTCATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.14
28 4 0.14
29 12 0.43
30 8 0.29
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.79
Consensus pattern (30 bp):
TTTTTATTTTTGATTTACTTTTCTTTTATT
Found at i:25941 original size:16 final size:15
Alignment explanation
Indices: 25899--25942 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
25889 TTTACTTTTC
*
25899 TTTATTTTTTT-ATT
1 TTTATTTTTTTCACT
25913 TTTATTTATTTTCACT
1 TTTATTT-TTTTCACT
25929 TTTATTTTGTTTCA
1 TTTATTTT-TTTCA
25943 TTATTCTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 7 0.27
15 5 0.19
16 14 0.54
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTATTTTTTTCACT
Found at i:26043 original size:59 final size:58
Alignment explanation
Indices: 25959--26134 Score: 185
Period size: 59 Copynumber: 2.9 Consensus size: 58
25949 TATTTTCTTT
** * *
25959 AAATAAAAATAAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGA
1 AAATAAATTTAAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
** *
26018 AAATCAAAGTTT-CCAAAGAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAA-TTTAAAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAA
* *
26077 AAATAAATTTAAAAAAAAAAAAAGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCC
1 AAATAAATTT--AAAAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
26135 CTGTACAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
57 3 0.03
58 5 0.05
59 43 0.45
60 13 0.14
61 1 0.01
62 29 0.30
63 2 0.02
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.32
Consensus pattern (58 bp):
AAATAAATTTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:30094 original size:7 final size:7
Alignment explanation
Indices: 30082--30136 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
30072 AGATGATGAA
*
30082 AAAAAAT
1 AAAAAAG
*
30089 AAAAAAT
1 AAAAAAG
30096 AAAAAA-
1 AAAAAAG
30102 AAGGAAAA-
1 AA--AAAAG
30110 AAAAAAG
1 AAAAAAG
30117 AAAAAAG
1 AAAAAAG
30124 AAAAAAG
1 AAAAAAG
30131 AAAAAA
1 AAAAAA
30137 ATGAGAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.13
7 33 0.73
8 6 0.13
ACGTcount: A:0.87, C:0.00, G:0.09, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:30137 original size:28 final size:28
Alignment explanation
Indices: 30080--30137 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
30070 GAAGATGATG
* * *
30080 AAAAAAAATAAAAAATAAAAAAAAGGAA
1 AAAAAAAAGAAAAAAGAAAAAAAAGAAA
30108 AAAAAAAAGAAAAAAG--AAAAAAGAAA
1 AAAAAAAAGAAAAAAGAAAAAAAAGAAA
30134 AAAA
1 AAAA
30138 TGAGAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 13 0.48
28 14 0.52
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (28 bp):
AAAAAAAAGAAAAAAGAAAAAAAAGAAA
Found at i:30143 original size:18 final size:18
Alignment explanation
Indices: 30080--30157 Score: 74
Period size: 17 Copynumber: 4.5 Consensus size: 18
30070 GAAGATGATG
* *
30080 AAAAAAA-ATAAAAAATA
1 AAAAAAAGAGAAAAAAGA
30097 AAAAAAAG-GAAAAAA-A
1 AAAAAAAGAGAAAAAAGA
*
30113 AAAGAAAAAAGAAAAAAGA
1 AAA-AAAAGAGAAAAAAGA
* *
30132 AAAAAATGAG-AAAATGA
1 AAAAAAAGAGAAAAAAGA
30149 AAAAAAAGA
1 AAAAAAAGA
30158 TTCAAATTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
16 4 0.08
17 31 0.61
18 12 0.24
19 4 0.08
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAAAAAGAGAAAAAAGA
Found at i:30155 original size:1 final size:1
Alignment explanation
Indices: 30080--30137 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
30070 GAAGATGATG
* * ** * * *
30080 AAAAAAAATAAAAAATAAAAAAAAGGAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30138 TGAGAAAATG
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (1 bp):
A
Found at i:31534 original size:43 final size:43
Alignment explanation
Indices: 31486--31589 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
31476 CTTTGAACTT
*
31486 AAATGAGAAGCTTTGAATTTTTGGATGTGAATCTCCAAAATT-C
1 AAATGAGAAGCTTTGAATTTTTGGATATGAAT-TCCAAAATTCC
* **
31529 AAATGAAAAGCTTT-AGATTTTTGGATATGAATTCCAAGTTTGCC
1 AAATGAGAAGCTTTGA-ATTTTTGGATATGAATTCCAAAATT-CC
*
31573 AAATGAGAACCTTTGAA
1 AAATGAGAAGCTTTGAA
31590 AAGCCTTGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
42 8 0.16
43 28 0.55
44 14 0.27
45 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34
Consensus pattern (43 bp):
AAATGAGAAGCTTTGAATTTTTGGATATGAATTCCAAAATTCC
Found at i:31918 original size:41 final size:40
Alignment explanation
Indices: 31856--32287 Score: 450
Period size: 41 Copynumber: 11.2 Consensus size: 40
31846 ATGATTGTCA
*
31856 AGGAGCAATTTACTTTCCAAAGTTCCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAG
31897 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
31938 AGGAGCAA-TTA--TTTCCAAGTCGTGGTGCC-C--TTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
31973 A-GAGC-A---A-TTTTCCAAGT-G-GTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAG
*
32005 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
32046 AGGAGCAATTTACTTTCCAAAGTC----G----T-TTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAG
*
32077 AGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
* *
32118 AAGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAG
32159 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
32200 AGGAGCAATTTA-TTTTCCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGT-GTGCCTCTGTTTAG
* * *
32241 AGGAGCAATTTACTTTCCAAAGTTGT-TAAGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGT--GCCTCTGTTTAG
32282 AGGAGC
1 AGGAGC
32288 TTTGATAAAA
Statistics
Matches: 345, Mismatches: 15, Indels: 62
0.82 0.04 0.15
Matches are distributed among these distances:
29 5 0.01
30 1 0.00
31 30 0.09
32 16 0.05
33 5 0.01
34 5 0.01
35 6 0.02
36 2 0.01
37 2 0.01
38 25 0.07
39 5 0.01
40 13 0.04
41 223 0.65
42 7 0.02
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (40 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAG
Found at i:32079 original size:31 final size:31
Alignment explanation
Indices: 32041--32102 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
32031 GGTGCCTCTG
32041 TTTAGAGGAGCAATTTACTTTCCAAAGTCGT
1 TTTAGAGGAGCAATTTACTTTCCAAAGTCGT
*
32072 TTTAGAGGAGCAATTTACTTTTCAAAGTCGT
1 TTTAGAGGAGCAATTTACTTTCCAAAGTCGT
32103 GGAGCCTCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (31 bp):
TTTAGAGGAGCAATTTACTTTCCAAAGTCGT
Found at i:32205 original size:195 final size:180
Alignment explanation
Indices: 31892--32263 Score: 555
Period size: 195 Copynumber: 2.0 Consensus size: 180
31882 GTTGCCTCTG
* *
31892 TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTATTTCCAAG
1 TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTGTTTAGAAGAGCAATTATTTCCAAG
*
31957 TCGTGGTGCCCTTTAGAGAGCAATTTTCCAAGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC
66 TCGTGGTGCCCTTTAGAGAGCAATTTTCAAAGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC
*
32022 CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGT
131 CAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGT
32072 TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTGTTTAGAAGAGCAATTTATTTTCCA
1 TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTGTTTAGAAGAGCAA-TTA-TTTCC-
*
32137 AAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
63 AAGTCGTGGTGCC---CTTTAGA-GAGC-A---A-TTTTCAAA---GTGGTGCCTCTGTTTAGAG
*
32202 GAGCAATTTATTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
116 GAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
32264 TGTTAAGCCT
Statistics
Matches: 171, Mismatches: 6, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
180 52 0.30
181 3 0.02
182 5 0.03
183 13 0.08
186 6 0.04
187 4 0.02
188 1 0.01
191 1 0.01
192 7 0.04
195 79 0.46
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (180 bp):
TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGAGCCTCTGTTTAGAAGAGCAATTATTTCCAAG
TCGTGGTGCCCTTTAGAGAGCAATTTTCAAAGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC
CAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGT
Found at i:32311 original size:8 final size:8
Alignment explanation
Indices: 32294--32332 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
32284 GAGCTTTGAT
32294 AAAAAA-A
1 AAAAAACA
32301 AAAAAACAA
1 AAAAAAC-A
32310 AAGAAAACA
1 AA-AAAACA
32319 AAAAAACA
1 AAAAAACA
32327 AAAAAA
1 AAAAAA
32333 GGTTGCCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 6 0.21
8 12 0.41
9 6 0.21
10 5 0.17
ACGTcount: A:0.90, C:0.08, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:32321 original size:18 final size:18
Alignment explanation
Indices: 32295--32329 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32285 AGCTTTGATA
32295 AAAAAAAAAAAACAAAAG
1 AAAAAAAAAAAACAAAAG
*
32313 AAAACAAAAAAACAAAA
1 AAAAAAAAAAAACAAAA
32330 AAAGGTTGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.89, C:0.09, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAACAAAAG
Found at i:32537 original size:117 final size:117
Alignment explanation
Indices: 32269--32570 Score: 373
Period size: 117 Copynumber: 2.6 Consensus size: 117
32259 AAAGTTGTTA
** * *
32269 AGCCTCTATTTAGAGGAGCTTTGAT-AAAA--AAAAAAAAACAAAAG-AAAACAAAA-AAAC-AA
1 AGCCTCTGCTTAGAGGAGCTTTGATCAAAATTAAAAAAAAAAAAAAGCAAAA-AAAATGAACAAA
* *
32328 AAAAAGGTTGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTG
65 AAAAAAGTTGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTG
* * ** ***
32381 AGCCTCTGCTTAAAGGAACTTTGATCAATTTTTCTAAAAAAAAAAAGCAAAAAAAATGAACAAAA
1 AGCCTCTGCTTAGAGGAGCTTTGATCAAAATTAAAAAAAAAAAAAAGCAAAAAAAATGAACAAAA
*
32446 AAAAAGTTGCCTCTATTTAGAGGAGTTTTGTTTATGTTTCTCAAAATCATTG
66 AAAAAGTTGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTG
* **
32498 AGCCTCTGCTTAGAGGAGCTTTGATCAAAATTAAAAAAAAAAAAAGAATCAAGAAAAAATGGGCA
1 AGCCTCTGCTTAGAGGAGCTTTGATCAAAATT-AAAAAAAAAAAA-AAGCAA-AAAAAATGAACA
32563 AAAAAAAA
63 AAAAAAAA
32571 ATCAGTTGAG
Statistics
Matches: 157, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
112 21 0.13
113 2 0.01
115 15 0.10
116 7 0.04
117 80 0.51
118 9 0.06
119 5 0.03
120 18 0.11
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.26
Consensus pattern (117 bp):
AGCCTCTGCTTAGAGGAGCTTTGATCAAAATTAAAAAAAAAAAAAAGCAAAAAAAATGAACAAAA
AAAAAGTTGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTG
Found at i:32741 original size:11 final size:11
Alignment explanation
Indices: 32727--32890 Score: 68
Period size: 11 Copynumber: 14.1 Consensus size: 11
32717 TATAGTTTTG
32727 TTATTTTTATT
1 TTATTTTTATT
*
32738 TTATTTGTATT
1 TTATTTTTATT
32749 TTATATTTTATGT
1 TTAT-TTTTAT-T
**
32762 ATATATTTTCCTT
1 -T-TATTTTTATT
**
32775 TTATATCCTA-T
1 TTAT-TTTTATT
*
32786 GTATTTATTA-T
1 TTATTT-TTATT
32797 TTATTTATTATT
1 TTATTT-TTATT
*
32809 ACTATTTATTAATAT
1 -TTATTT-TT-AT-T
*
32824 ATATTTTTATT
1 TTATTTTTATT
*
32835 TTATTTTTCCTT
1 TTATTTTT-ATT
32847 TTATTTTT-TAT
1 TTATTTTTAT-T
*
32858 TT-TTTTCATT
1 TTATTTTTATT
32868 TTA-TTTTATAT
1 TTATTTTTAT-T
*
32879 GTATTTTTATT
1 TTATTTTTATT
32890 T
1 T
32891 ATCTAATTAT
Statistics
Matches: 117, Mismatches: 20, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
10 14 0.12
11 49 0.42
12 26 0.22
13 12 0.10
14 12 0.10
15 4 0.03
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:32755 original size:18 final size:18
Alignment explanation
Indices: 32723--32759 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32713 GTTTTATAGT
32723 TTTGTTATTTTTATTTTA
1 TTTGTTATTTTTATTTTA
32741 TTTG-TATTTTATATTTTA
1 TTTGTTATTTT-TATTTTA
32759 T
1 T
32760 GTATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTGTTATTTTTATTTTA
Found at i:32848 original size:12 final size:11
Alignment explanation
Indices: 32825--32874 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
32815 TATTAATATA
*
32825 TATTTTTATTT
1 TATTTTTCTTT
32836 TATTTTTCCTTT
1 TATTTTT-CTTT
*
32848 TATTTTT-TAT
1 TATTTTTCTTT
32858 T-TTTTTCATTT
1 TATTTTTC-TTT
32869 TATTTT
1 TATTTT
32875 ATATGTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 5 0.16
10 3 0.09
11 10 0.31
12 14 0.44
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (11 bp):
TATTTTTCTTT
Found at i:32850 original size:33 final size:33
Alignment explanation
Indices: 32791--32874 Score: 82
Period size: 33 Copynumber: 2.5 Consensus size: 33
32781 CCTATGTATT
*
32791 TATTATTTA-TTTATTATTACTATTTATTAATATA
1 TATT-TTTATTTTATTTTTACTATTTATT-ATATA
* * *
32825 TATTTTTATTTTATTTTTCCT-TTTATTTTTTA
1 TATTTTTATTTTATTTTTACTATTTATTATATA
*
32857 TTTTTTTCATTTTATTTT
1 TATTTTT-ATTTTATTTT
32875 ATATGTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
32 9 0.21
33 20 0.47
34 14 0.33
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (33 bp):
TATTTTTATTTTATTTTTACTATTTATTATATA
Found at i:32892 original size:21 final size:21
Alignment explanation
Indices: 32828--32878 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32818 TAATATATAT
* *
32828 TTTTATTTTATTTTTCCTTTTA
1 TTTTATATT-TTTTTCATTTTA
*
32850 TTTTTTATTTTTTTCATTTTA
1 TTTTATATTTTTTTCATTTTA
32871 TTTTATAT
1 TTTTATAT
32879 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTATATTTTTTTCATTTTA
Found at i:32900 original size:93 final size:97
Alignment explanation
Indices: 32728--32901 Score: 223
Period size: 93 Copynumber: 1.8 Consensus size: 97
32718 ATAGTTTTGT
* * *
32728 TATTTTTATTTTATTTGTATTTTATATTTTATGTATATATTTTCCTTTTATATCCTATGTATTTA
1 TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
*
32793 TTATTTATTTATTATTACTATTTATTAATATA
66 TTATTTATTAATTATTACTATTTATTAATATA
* * * * *
32825 TATTTTTATTTTATTTTTCCTTT-TATTTT-T-TAT-TTTTTTCATTTTATTTTATATGTATTT-
1 TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
32885 TTATTTATCTAATTATT
66 TTATTTAT-TAATTATT
32902 TACTTATCTG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 8 0.12
93 29 0.43
94 3 0.04
95 1 0.01
96 6 0.09
97 20 0.30
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (97 bp):
TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
TTATTTATTAATTATTACTATTTATTAATATA
Found at i:32939 original size:21 final size:22
Alignment explanation
Indices: 32915--32961 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
32905 TTATCTGTTA
* *
32915 TTATTATTATT-TTTATTAATC
1 TTATTAATATTATTGATTAATC
*
32936 TTA-TAATATTATTGATTTATC
1 TTATTAATATTATTGATTAATC
32957 TTATT
1 TTATT
32962 TTTCTAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.29
21 14 0.67
22 1 0.05
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTAATATTATTGATTAATC
Found at i:33912 original size:11 final size:10
Alignment explanation
Indices: 33896--33960 Score: 53
Period size: 11 Copynumber: 6.4 Consensus size: 10
33886 TTAATATTCT
33896 TTTTATCTTTA
1 TTTT-TCTTTA
*
33907 TTTTATTTTTA
1 TTTT-TCTTTA
*
33918 TTTTTGTTTTA
1 TTTTT-CTTTA
*
33929 CTTTTCTTTA
1 TTTTTCTTTA
33939 -TTTT-TTTA
1 TTTTTCTTTA
*
33947 TTTTTATTTA
1 TTTTTCTTTA
33957 TTTT
1 TTTT
33961 CACTTTTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
8 4 0.08
9 8 0.17
10 13 0.27
11 23 0.48
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:33916 original size:6 final size:6
Alignment explanation
Indices: 33895--33972 Score: 58
Period size: 6 Copynumber: 13.7 Consensus size: 6
33885 TTTAATATTC
* * * *
33895 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTATT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA
* *
33941 TTTTTA TTTTTA --TTTA TTTTCA CTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
33973 GTTTCATTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
4 4 0.07
5 10 0.18
6 40 0.71
7 2 0.04
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:33917 original size:17 final size:16
Alignment explanation
Indices: 33895--33953 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
33885 TTTAATATTC
*
33895 TTTTTATCTTTATTTTA
1 TTTTTATATTT-TTTTA
*
33912 TTTTTATTTTTGTTTTA
1 TTTTTATATTT-TTTTA
*
33929 CTTTTCTTTATTTTTTTA
1 -TTTT-TATATTTTTTTA
33947 TTTTTAT
1 TTTTTAT
33954 TTATTTTCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 2 0.06
17 19 0.54
18 9 0.26
19 5 0.14
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTATATTTTTTTA
Found at i:33956 original size:18 final size:18
Alignment explanation
Indices: 33907--33960 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
33897 TTTATCTTTA
*
33907 TTTTATTTTTATTT-TTG
1 TTTTATTTTTATTTATTT
* *
33924 TTTTACTTTTCTTTATTT
1 TTTTATTTTTATTTATTT
33942 TTTTATTTTTATTTATTT
1 TTTTATTTTTATTTATTT
33960 T
1 T
33961 CACTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 12 0.39
18 19 0.61
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTATTTTTATTTATTT
Found at i:33977 original size:16 final size:15
Alignment explanation
Indices: 33935--33978 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
33925 TTTACTTTTC
*
33935 TTTATTTTTTT-ATT
1 TTTATTTTTTTCACT
33949 TTTATTTATTTTCACT
1 TTTATTT-TTTTCACT
33965 TTTATTTTGTTTCA
1 TTTATTTT-TTTCA
33979 TTATTCTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 7 0.27
15 5 0.19
16 14 0.54
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTATTTTTTTCACT
Found at i:34158 original size:59 final size:59
Alignment explanation
Indices: 34005--34283 Score: 420
Period size: 59 Copynumber: 4.7 Consensus size: 59
33995 AAATAAAAAT
**
34005 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
34064 -AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
34122 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
* * *
34183 AAAAAATA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
1 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
34240 AAAAAAAAGGGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAA-GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
34284 CTGCACAAAA
Statistics
Matches: 198, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
57 10 0.05
58 57 0.29
59 86 0.43
60 34 0.17
61 11 0.06
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (59 bp):
AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:35043 original size:45 final size:44
Alignment explanation
Indices: 34782--36271 Score: 849
Period size: 45 Copynumber: 33.2 Consensus size: 44
34772 TTGATGGTAC
* * *
34782 TCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGG
** * * * * *
34827 TCGAGGCAACCGTTCGTACCAGGGGCCATCTTCTGCCAATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* ** * *
34872 TTGAGGCAAGAGCCCACACCAAGGTCC-GACTTGTGCCGATGGTGC
1 TCGAGGCAACCGCCCGCACCAAGG-CCAG-CTTGTGCCGATGGTGG
* * * ** * * *
34917 TCGAGGCCAA-CGCCCACACGAAGGCGTAGCACGTGTCGATGTTGT
1 TCGAGG-CAACCGCCCGCACCAAGGC-CAGCTTGTGCCGATGGTGG
* * *
34962 TCGAGGCAACCGTCCGCACCGACGCCCAGC-TGTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACC-AAGGCCAGCTTGTGCCGATGGTGG
* * * * * ** *
35006 TTGAGGTAACTGCCCGTACCAAGGCTCAACTTGTGCCGATCATGT
1 TCGAGGCAACCGCCCGCACCAAGGC-CAGCTTGTGCCGATGGTGG
* * * * * * **
35051 TTGACGTAACTGCCCTCACCAAGGGCCATCTTGTGTTGATGGTGG
1 TCGAGGCAACCGCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGG
* * * * *
35096 TCAAGGCAACCGCCCGCACAAAAGGTCGGCTTGTGTCGATGGTGG
1 TCGAGGCAACCGCCCGCAC-CAAGGCCAGCTTGTGCCGATGGTGG
* * * ** * **
35141 TCAAGGTAACCGCCCGCACCAGGGGCCATTTTTTATCGATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* ** * *
35186 TCGAAGCAAGAGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGC
1 TCGAGGCAACCGCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGG
* ** ** * *
35231 TCGAGGCAACCTCTTGCACCAAGGCCTAGCACGTGCTGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGCC-AGCTTGTGCCGATGGTGG
* * * * * * *
35276 TTGAGGCAATCGTCCACACCAAGGCTC-GACATGTGCTGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGC-CAG-CTTGTGCCGATGGTGG
* * * * * * * *
35321 TCGATGTAACTGCCCGTACCAGGGTTCATCTTGTGTCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGG
* * * *
35366 TCGAGGCAACCGCCTGGACCAAGGGTC-GTCTTGTGCTGATGGTGG
1 TCGAGGCAACCGCCCGCACCAA-GGCCAG-CTTGTGCCGATGGTGG
* * * * *
35411 TCGAGGAAACTGCCCGCACCAAAGGTCAACTTGTGCAGATGGTGG
1 TCGAGGCAACCGCCCGCACC-AAGGCCAGCTTGTGCCGATGGTGG
* ** * **
35456 TCGAGGCAACCGCCCGCACCAGGGGCCATTTTCTATCGATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* ** *
35501 TCGAGGAAATAGCCCGCACCAAGGGCCAGCTTATGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGG
* ** * * * *
35546 TCAAGGCAACCAACCGCACCAGTGGCCATCTTCTGCAGATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* ** *
35591 TCGAGGCAACCGCCCGTACCAAGGCCCAGCACGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGG
* * * * * * *
35636 TTGACGCAACCACCCGCACCAGGGGCCATCTTGTGTCGATAGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* * * * * * *
35681 TCAAGGTAACCGTCTGCACCAAGGTC-GACTAGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGCCAG-CTTGTGCCGATGGTGG
* * * * * *
35725 TCAAGGCAACCGCCTGCACTAGGGGCCATCTTCTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* * * * * *
35770 TCGAGACAACTGCCCACACCAAGGCCCAGCATGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGG
* * * *
35815 TCGATGCAACCGCCCGTACCAGAGGCCATCTTGTGCCGATGGTGA
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* * * *
35860 TCGAGGTAACCACCCACACCAAGGGCC-GACTGGTG-CGATGGT-G
1 TCGAGGCAACCGCCCGCACCAA-GGCCAG-CTTGTGCCGATGGTGG
** * * * * ** * *
35903 TTTAAGCAACTGCCTGCACGAAGGCTTGACATGTGCCGATAGTGG
1 TCGAGGCAACCGCCCGCACCAAGGCCAG-CTTGTGCCGATGGTGG
* * * * * *
35948 TCGAGGTAACCGCCTGCACCACGGTCCAGCATGTGCCAATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGG
* * *
35993 TCGAGGCAACCACCTGCACCAAGGCTCAGCATGTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGC-CAGCTTGTGCCGATGGTGG
* * *
36038 TCGAGGCAACCGCCCGTACCATGGCCCAGCATT-TGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGC-TTGTGCCGATGGTGG
* * * * * * * *
36083 TCGATGCGATCGCTCACACCAGGGGCCATCTTATGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGG
* * * * *
36128 TCGAGGCAATCGCCCGTACTAAGGGCCGGCTTGTGCCGATGGTGA
1 TCGAGGCAACCGCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGG
* * * * *
36173 TCGAGGCAACCGCCCGCACCAAAGGTCAGCATATGCCAATGGTGA
1 TCGAGGCAACCGCCCGCACC-AAGGCCAGCTTGTGCCGATGGTGG
* * * *
36218 TCGAGGCAACTGCCCGCACCAGGGCCCAGCTTGTGCCAATGGCGG
1 TCGAGGCAACCGCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGG
36263 TCGAGGCAA
1 TCGAGGCAA
36272 GTGCTCGTAC
Statistics
Matches: 1083, Mismatches: 315, Indels: 94
0.73 0.21 0.06
Matches are distributed among these distances:
42 3 0.00
43 22 0.02
44 98 0.09
45 930 0.86
46 30 0.03
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (44 bp):
TCGAGGCAACCGCCCGCACCAAGGCCAGCTTGTGCCGATGGTGG
Found at i:36154 original size:268 final size:268
Alignment explanation
Indices: 35397--36193 Score: 694
Period size: 268 Copynumber: 3.0 Consensus size: 268
35387 AGGGTCGTCT
* * * * * * * * * *
35397 TGTGCTGATGGTGGTCGAGGAAACTGCCCGCACCAAAGGTCAACTTGTG-CAGATGGTGGTCGAG
1 TGTGCCGATAGTGGTCAAGGTAACCGCCTGCACC-AAGGTCCACTAGTGCCA-ATGGTGTTCAAG
* * * *** ** ** *
35461 GCAACCGCCCGCACCAGGGGCCATTTTCTATCGATGGTGGTCGAGGA-AATAGCCCGCACCAAGG
64 GCAACCACCTGCACCAGAGGCCAGCATCTGCCGATGGTGGTCGA-GACAACCGCCCACACCAAGG
* * * * * * ** * * * *
35525 GCCAGCTTATGCCGATGGTGGTCAAGGCAACCAACCGCACCAGTGGCCATCTTCTGCAGATGGTG
128 CCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGAGGCCATCTTATGCCGATGGTG
* *
35590 GTCGAGGCAACCGCCCGTACCAAGGCCCAGCAC-GTGCCGATGGTGTTTGACGCAACCACCCGCA
193 GTCGAGGCAACCGCCCGTACCAAGGGCC-G-ACTGTGCCGATGGTGTTTGAAGCAACCACCCGCA
* *
35654 CCAGGGGCCATCT
256 CCAGAGGCCATCA
* * * *
35667 TGTGTCGATAGTGGTCAAGGTAACCGTCTGCACCAAGGTCGACTAGTGCCGATGGTGTTCAAGGC
1 TGTGCCGATAGTGGTCAAGGTAACCGCCTGCACCAAGGTCCACTAGTGCCAATGGTGTTCAAGGC
* * * * * *
35732 AACCGCCTGCACTAGGGGCCATCTTCTGCCGATGGTGGTCGAGACAACTGCCCACACCAAGGCCC
66 AACCACCTGCACCAGAGGCCAGCATCTGCCGATGGTGGTCGAGACAACCGCCCACACCAAGGCCC
* ** * *
35797 AGCATGTGTCGATGGTGTTCGATGCAACCGCCCGTACCAGAGGCCATCTTGTGCCGATGGTGATC
131 AGCATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGAGGCCATCTTATGCCGATGGTGGTC
* * ** ** * *
35862 GAGGTAACCACCCACACCAAGGGCCGACTGGTG-CGATGGTGTTT-AAGCAACTGCCTGCACGA-
196 GAGGCAACCGCCCGTACCAAGGGCCGACT-GTGCCGATGGTGTTTGAAGCAACCACCCGCACCAG
*
35924 AGG-CTTGACA
260 AGGCCAT--CA
* * *
35934 TGTGCCGATAGTGGTCGAGGTAACCGCCTGCACCACGGTCCAGC-ATGTGCCAATGGTGTTCGAG
1 TGTGCCGATAGTGGTCAAGGTAACCGCCTGCACCAAGGTCCA-CTA-GTGCCAATGGTGTTCAAG
* * ** *
35998 GCAACCACCTGCACCA-AGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCATGG
64 GCAACCACCTGCACCAGAGGC-CAGCATCTGCCGATGGTGGTCGAGACAACCGCCCACACCAAGG
* * * * *
36062 CCCAGCATTTGCCGATGGTGTTCGATGCGATCGCTCACACCAGGGGCCATCTTATGCCGATGGTG
128 CCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGAGGCCATCTTATGCCGATGGTG
* * * * * * *
36127 GTCGAGGCAATCGCCCGTACTAAGGGCCGGCTTGTGCCGATGGTGATCGAGGCAACCGCCCGCAC
193 GTCGAGGCAACCGCCCGTACCAAGGGCCGAC-TGTGCCGATGGTGTTTGAAGCAACCACCCGCAC
36192 CA
257 CA
36194 AAGGTCAGCA
Statistics
Matches: 426, Mismatches: 89, Indels: 24
0.79 0.17 0.04
Matches are distributed among these distances:
265 2 0.00
266 2 0.00
267 57 0.13
268 162 0.38
269 162 0.38
270 41 0.10
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (268 bp):
TGTGCCGATAGTGGTCAAGGTAACCGCCTGCACCAAGGTCCACTAGTGCCAATGGTGTTCAAGGC
AACCACCTGCACCAGAGGCCAGCATCTGCCGATGGTGGTCGAGACAACCGCCCACACCAAGGCCC
AGCATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGAGGCCATCTTATGCCGATGGTGGTC
GAGGCAACCGCCCGTACCAAGGGCCGACTGTGCCGATGGTGTTTGAAGCAACCACCCGCACCAGA
GGCCATCA
Found at i:36298 original size:45 final size:45
Alignment explanation
Indices: 36159--36298 Score: 140
Period size: 45 Copynumber: 3.1 Consensus size: 45
36149 AGGGCCGGCT
* * * *
36159 TGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAAGGTCAGCA
1 TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGGCAGCA
* * *
36204 TATGCCAATGGTGATCGAGGCAACTGCCCGCACC--AGGGCCCAGCT
1 TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGG--CAGCA
* * * * *
36249 TGTGCCAATGGCGGTCGAGGCAAGTGCTCGTACCAAAGGGCAGCC
1 TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGGCAGCA
36294 TGTGC
1 TGTGC
36299 TGATAATGGT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
43 3 0.04
45 72 0.91
47 4 0.05
ACGTcount: A:0.22, C:0.30, G:0.32, T:0.16
Consensus pattern (45 bp):
TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGGCAGCA
Found at i:36459 original size:11 final size:11
Alignment explanation
Indices: 36443--36475 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
36433 CCCGGGACAC
36443 CATCGTCGGAG
1 CATCGTCGGAG
*
36454 CATCGTTGGAG
1 CATCGTCGGAG
36465 CATCGTCGGAG
1 CATCGTCGGAG
36476 AGCCTAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:37092 original size:26 final size:26
Alignment explanation
Indices: 37056--37106 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
37046 TGACTTAGGT
*
37056 ATACGGAGTTCA-TCTCCAGTCTAAGC
1 ATACAGAGTTCATTC-CCAGTCTAAGC
37082 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
37107 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:38580 original size:44 final size:45
Alignment explanation
Indices: 38500--38611 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 45
38490 NNNNNNNNNN
*
38500 GGCAACCGCCCGCACCAAGGGCCAGCATATGTCGATGGTGATCGA
1 GGCAACCGCCCGCACCAAGGGCCAGCATATGCCGATGGTGATCGA
* * * *
38545 GGCAACCGCCTGCACC-AGGGCCAGCGTGTGCCGATGGTGGTCGA
1 GGCAACCGCCCGCACCAAGGGCCAGCATATGCCGATGGTGATCGA
** *
38589 GGCAAGTGCCCGTACCAAAGGGC
1 GGCAACCGCCCGCACC-AAGGGC
38612 AGCCTGTGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.64
45 15 0.27
46 5 0.09
ACGTcount: A:0.21, C:0.31, G:0.35, T:0.12
Consensus pattern (45 bp):
GGCAACCGCCCGCACCAAGGGCCAGCATATGCCGATGGTGATCGA
Found at i:38868 original size:9 final size:9
Alignment explanation
Indices: 38851--38881 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
38841 CGCACATGAT
*
38851 GTGCGATGG
1 GTGCAATGG
38860 GTGCAATGG
1 GTGCAATGG
38869 GTGCAATGG
1 GTGCAATGG
38878 GTGC
1 GTGC
38882 TGGTACTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.13, G:0.48, T:0.23
Consensus pattern (9 bp):
GTGCAATGG
Found at i:42117 original size:45 final size:45
Alignment explanation
Indices: 42015--43612 Score: 988
Period size: 45 Copynumber: 35.5 Consensus size: 45
42005 GATAGTGTTT
* * * *
42015 GAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * *
42060 AAGGTAATCGCCCGCACCAAGGGCCATCTTCTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * ** * *
42105 GAGGCAACCGCCCGTAGCAAGGTCCAGCACGTGCCGATGGTGTTT
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * *
42150 GAAGCAACCG-CCGCACCAGGGGCCAGCATGTGTCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * *
42194 GAGGTAACCACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
** * * * * *
42239 GAGGCAAGAGCCCACACCAAGGACC-TACCTGTGTCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAT-CTTGTGCCGATGGTGGTC
* * ** * ** *
42284 GAGGCAATCGCCCACATGAA-GGCCTAGCACGTGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCGATGGTGGTC
* * * * * **
42329 GAGGCAACTGCCCACACCGAGGCCCAAT-ATGTGCCGATTATGGTC
1 GAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCGATGGTGGTC
* * * *
42374 GAGGCAATCGCCCGCACCAAGGCCCAGT-ATGTGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCA-TCTTGTGCCGATGGTGGTC
* * * * *
42419 GACGCAACCGCCTGCACCAGGGGCTATCTTGTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * *
42464 GAGGCAACCACCCGCACCAAGGGCCAGCTTGTGCTGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
*** * * **
42509 GAGGCAACCGCCCGCACTGGGGGCCATTTTCTATCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
** * * * ** * * *
42554 GAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTGCAG-TAGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * ** * * * *
42598 GAGGCAACTGCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * *** *
42643 GAGGTAACTGCCCGTACCAA-GGCTCAAAATGTGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGC-CATCTTGTGCCGATGGTGGTC
* * * * * *
42688 GATGTAATCGCCCGTACCAGGGGCCATCTTATGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
*
42733 GAGGCAACCGCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * *
42778 GAAGCAACCTCCCGCACCAAGGGTCAGCTTGTGCAGATAGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * * * *
42823 GAGGTAACCGCCTGCACTAGGGGCCATTTTCTACAGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
** * * ** *
42868 GAGTTAACCGCTCGTACCAAGGGCCGGCTTATGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * *
42913 GAGGTAACCGCCCACACCAAGGCCCAGCATGTGCCGATGGTGATC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* ** * * * * *
42958 GAGGTAAGAGCCCGTACCAAGGGCGAGCTTGTACCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * *
43003 GAGGAAACCACCCGCACCAGGGGCCATCTTCTGCCGATGCTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * * * *
43048 GAGGCAACCGTCCGTACCAAGGCCCAGCATT-CGCCCATTGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCATC-TTGTGCCGATGGTGGTC
* * * * *
43093 GAGGCAACCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* ** * * * * *
43138 GAGGTAACCGCTTGCACCAAGGCCCAGCATCTGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * * * *
43183 -ACCGCAATCGCTCGTATCAGGGGCCATCTTGTGCCCGATAGTGCTC
1 GA-GGCAACCGCCCGCACCAAGGGCCATCTTGTG-CCGATGGTGGTC
* * * *
43229 GAGGCAACCGCCTGCACCAGGGGCCATCTTCTACCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * * * * *
43274 GAGGTAACCGCCCGCACCAAGGCCCAGCATATGCTGATAGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
** * * *
43319 GTCGCAATCGCCTGCAACACAGGGGCCATCTTGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGC-AC-CAAGGGCCATCTTGTGCCGATGGTGGTC
* * * * *
43366 GAGGCAACCACCCACACCAAGGGCCGA-CTGGTGTCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCGATGGTGGTC
** * ** * * *
43411 GAGGCAACAACCCACACCAA-GGCTCGGCATGTGCTGATGGTGGTT
1 GAGGCAACCGCCCGCACCAAGGGC-CATCTTGTGCCGATGGTGGTC
* * * * * * *
43456 GAGGTAACCGCCCGTACCATGGCCCAGCATGTGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * *
43501 GATGCAACCGCCCGCACC-AGGGCCCATCTTGTACCGATGGTGGTT
1 GAGGCAACCGCCCGCACCAAGGG-CCATCTTGTGCCGATGGTGGTC
* * * * * *
43546 GAAGTAATCGCCTGCACCAAGGGCCAGCTTGTGCCGATGGTGGTT
1 GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
* * **
43591 GAGGTAAGCGCCTACACCAAGG
1 GAGGCAACCGCCCGCACCAAGG
43613 CCTAGCTTGT
Statistics
Matches: 1182, Mismatches: 348, Indels: 46
0.75 0.22 0.03
Matches are distributed among these distances:
44 80 0.07
45 1019 0.86
46 53 0.04
47 30 0.03
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTC
Found at i:42315 original size:179 final size:179
Alignment explanation
Indices: 41996--42336 Score: 420
Period size: 179 Copynumber: 1.9 Consensus size: 179
41986 CCAAGGCCCG
* * *
41996 GCATGTGCTGATAGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGATGGTGCTCA
1 GCATGTGCTGATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTCA
* ** * * * * **
42061 AGGTAATCGCCCGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCGCCCGTAGCAAG
66 AGGCAAGAGCCCACACCAAGGACCATCCTCTGTCGATGGTGCTCGAGGCAACCGCCCACAGCAAG
*
42126 GTCCAGCACGTGCCGATGGTGTTTGAAGCAACCGCCGCACCAGGGGCCA
131 GTCCAGCACGTGCCGATGGTGTTCGAAGCAACCGCCGCACCAGGGGCCA
* * * * *
42175 GCATGTG-TCGATGGTGTTCGAGGTAACCACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTC
1 GCATGTGCT-GATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTC
* * *
42239 GAGGCAAGAGCCCACACCAAGGACC-TACCTGTGTCGATGGTGCTCGAGGCAATCGCCCACATG-
65 AAGGCAAGAGCCCACACCAAGGACCAT-CCTCTGTCGATGGTGCTCGAGGCAACCGCCCACA-GC
*
42302 AAGG-CCTAGCACGTGCCGATGGTGTTCGAGGCAAC
128 AAGGTCC-AGCACGTGCCGATGGTGTTCGAAGCAAC
42337 TGCCCACACC
Statistics
Matches: 136, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
178 4 0.03
179 131 0.96
180 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (179 bp):
GCATGTGCTGATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTCA
AGGCAAGAGCCCACACCAAGGACCATCCTCTGTCGATGGTGCTCGAGGCAACCGCCCACAGCAAG
GTCCAGCACGTGCCGATGGTGTTCGAAGCAACCGCCGCACCAGGGGCCA
Found at i:43429 original size:137 final size:136
Alignment explanation
Indices: 43091--43448 Score: 319
Period size: 136 Copynumber: 2.6 Consensus size: 136
43081 CCCATTGTGT
* * * * * * ** ***
43091 TCGAGGCAACCGCCCACACCAAGGCCCAGCATG-TGCCAATGGTGGTCGAGGTAACCGCTTGCAC
1 TCGAGGCAACCACCCACACCAAGGGCCATC-TGCTACCGATGGTGGTCGAGGCAACAACCCACAC
* * * * *
43155 CAAGGCCCAGCATCTGCCGATGGTGTTCACCGCAATCGCTCGTATCAGGGGCCATCTTGTGCCCG
65 CAAGGCCCAGCATATGCTGATAGTGTTCACCGCAATCGCTCGAAACAGGGGCCATCTTGTGCCCG
43220 ATAGTGC
130 ATAGTGC
* ** * * * ** *
43227 TCGAGGCAACCGCCTGCACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAACCGCCCGCACC
1 TCGAGGCAACCACCCACACCAAGGGCCATCTGCTACCGATGGTGGTCGAGGCAACAACCCACACC
**
43292 AAGGCCCAGCATATGCTGATAGTGTTCGTCGCAATCGC-CTGCAACACAGGGGCCATCTTGTG-C
66 AAGGCCCAGCATATGCTGATAGTGTTCACCGCAATCGCTC-G-AA-ACAGGGGCCATCTTGTGCC
* *
43355 CGATGGTGG
128 CGATAGTGC
* ** *
43364 TCGAGGCAACCACCCACACCAAGGGCCGA-CTGGTGTCGATGGTGTTCGAGGCAACAACCCACAC
1 TCGAGGCAACCACCCACACCAAGGGCC-ATCTGCTACCGATGGTGGTCGAGGCAACAACCCACAC
* * *
43428 CAAGGCTCGGCATGTGCTGAT
65 CAAGGCCCAGCATATGCTGAT
43449 GGTGGTTGAG
Statistics
Matches: 182, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
135 2 0.01
136 87 0.48
137 76 0.42
138 17 0.09
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (136 bp):
TCGAGGCAACCACCCACACCAAGGGCCATCTGCTACCGATGGTGGTCGAGGCAACAACCCACACC
AAGGCCCAGCATATGCTGATAGTGTTCACCGCAATCGCTCGAAACAGGGGCCATCTTGTGCCCGA
TAGTGC
Found at i:44746 original size:159 final size:158
Alignment explanation
Indices: 44448--44946 Score: 601
Period size: 159 Copynumber: 3.1 Consensus size: 158
44438 TAAGCATATG
* * * *
44448 GAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCGACAGCAGGATCGACAGAACGC
1 GAGTTCATT-CCATGTCTAAGA-CTAGCCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
44512 AGGAGAGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGC
64 A-GAG-GGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGC
*
44577 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACA
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
**
44609 GAGTTCATTCCATGTCTAAGACCTAGCCAGATCGAGGGTT-CTGGCAGTGGGATCGACAGCACGC
1 GAGTTCATTCCATGTCTAAGA-CTAGCCAGATCGAGGGTTGC-GGCAGCAGGATCGACAGCACGC
** * * * *
44673 AGAGGGGGACCGGGTCGATCCCCGGCTTGCATATTTTGCCTCTTCGATCGGCTCAACGCCCGTAC
64 AGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCAC
* **
44738 GCTCGTTTCGTGAGTTAACTTAGGCATACA
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACA
* * * *
44768 GAGTTCATTCC-TAGTCTAAGATTAGACCGGAAT-GAGGGTTGCGGTAGCAGGATCGACAGCACA
1 GAGTTCATTCCAT-GTCTAAGACTAG-CCAG-ATCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * *
44831 CAGAAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGCA
63 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCA
*
44896 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
*
44927 GAGTTCACTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
44947 CATACGGAGT
Statistics
Matches: 287, Mismatches: 44, Indels: 16
0.83 0.13 0.05
Matches are distributed among these distances:
158 4 0.01
159 220 0.77
160 11 0.04
161 52 0.18
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACTAGCCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:44956 original size:26 final size:26
Alignment explanation
Indices: 44920--44972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
44910 GTTGGCTTAG
44920 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
44946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
44972 G
1 G
44973 ATGGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:52935 original size:45 final size:45
Alignment explanation
Indices: 52881--54110 Score: 777
Period size: 45 Copynumber: 27.3 Consensus size: 45
52871 CGAGGCATGT
* * * * *
52881 GCCCACACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGGCAGCC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * * * * **
52926 GCTTGCACCAGGGGCCATCTTTTACCGATGATGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * ** *
52971 GCCCGCACTAAGGGTCAGCTTGTGTCGATGGTACTAGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * *
53016 GCTTGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * *
53061 ACCCGCACCAA-GGCTCAGCATGTGCCAATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACC
* * *
53106 GCCCACACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * **
53151 GCCCACACCAAGGGCCATCTTTTGCCAATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
53196 GCCTGCACCAAAGGCCGGCTTGTGCCGATGGTGCTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* ** * * * * * *
53241 ACCCGCATGAA-GGCTAGCACGTGTCGATGGTGTTTGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
53285 GCCCGCACCGAGGCCCAGCATGTGCCAATGGTGGTCGAGGTAACT
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * ** * * * *
53330 GCCCACACCAA-GGCTCAGCATGTGTCGATCATGTTCAACGCAATC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACC
* * *
53375 GCCCGCACCAAGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *
53420 GCCCGCACCAAGGGTCAACTTGTGCCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *** * * * * **
53465 ACCCGCAACAGGGGCCATTTTCTACCGATGGTGGTTGAGGTAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * ** **
53510 GCCCGCACCAAGGGTCGGCTTGTGCCGATGGTGCTTAAGGTTACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
53555 ACCCGTACCAA-GGCCTAGCACGTGACGATGATGTTCGAGGCAACC
1 GCCCGCACCAAGGGCC-AGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * *
53600 GCATGCACCAAGGCCCGGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
53645 GTCTGCACC-AGAGGCCATCTTGTGCCGATAGTGGTCGAGGCAACC
1 GCCCGCACCAAG-GGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * * *
53690 ACCCGTACTAGGGGCCATCTTCTGCCGATGGTGGTCGAAGCAACT
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
53735 GCTCGCACTAAGGCCCAGCATGTGCCGATAGTGTTCGATGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * *
53780 GCCCATACCAGGGGCTATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
53825 ACCCGTACCAAGGGCCGGC-TGGTGTCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCAT-GTGCCGATGGTGGTCGAGGCAACC
* * * * * *
53870 GCCCACACCAA-GACTCGGCATATGCCGATGGTGGTCAAGGCAATC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * * *
53915 ATCAGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* ** * * * * *
53960 GCTCGCAGTAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *
54005 GCCCGCACCAAGGGCCGGCGTGTGCCAATGGTGGTCGAGGCAATCA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAA-CC
* * **
54051 G-CCGCACC-AGGGCCCAGCTTATGCCGATGGTGGTCGAGGCAAGT
1 GCCCGCACCAAGGG-CCAGCATGTGCCGATGGTGGTCGAGGCAACC
*
54095 GCCCGTACCAAAGGGC
1 GCCCGCACC-AAGGGC
54111 AACCTGTACC
Statistics
Matches: 890, Mismatches: 277, Indels: 35
0.74 0.23 0.03
Matches are distributed among these distances:
44 49 0.06
45 822 0.92
46 15 0.02
47 4 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
Found at i:56675 original size:45 final size:45
Alignment explanation
Indices: 56595--56696 Score: 114
Period size: 45 Copynumber: 2.3 Consensus size: 45
56585 TTGGGGCATG
* * * *
56595 TGCCAGCACCAAGGGCCAACGGGTGCCGATAGTGGTCGATGCGAC
1 TGCCCGCACCAAGGGCCAACGGGTGCCAATAGTGGTCGAGGCAAC
* * * *
56640 TGCCCGCACCAAGGGCCAGCGTGTGTCAATGGTGGTCGAGGCAAC
1 TGCCCGCACCAAGGGCCAACGGGTGCCAATAGTGGTCGAGGCAAC
* *
56685 CGCCCGGACCAA
1 TGCCCGCACCAA
56697 ATCGAGGCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.22, C:0.31, G:0.34, T:0.13
Consensus pattern (45 bp):
TGCCCGCACCAAGGGCCAACGGGTGCCAATAGTGGTCGAGGCAAC
Found at i:56984 original size:28 final size:28
Alignment explanation
Indices: 56953--57007 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
56943 CCTTTATATC
* *
56953 CTATGTATTTAT-TATTTATTTGTTATTA
1 CTATGTATTAATATATATATTT-TTATTA
*
56981 CTATTTATTAATATATATATTTTTATT
1 CTATGTATTAATATATATATTTTTATT
57008 TTATTTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (28 bp):
CTATGTATTAATATATATATTTTTATTA
Found at i:58092 original size:6 final size:6
Alignment explanation
Indices: 58072--58147 Score: 54
Period size: 6 Copynumber: 13.5 Consensus size: 6
58062 TTAATATTCA
* * * * *
58072 TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT TTAT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
58117 TTTTAT TTTTA- -TTTAT TTTCAC TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
58148 GTTTCATTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
4 4 0.08
5 12 0.23
6 37 0.70
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:58094 original size:17 final size:17
Alignment explanation
Indices: 58072--58128 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
58062 TTAATATTCA
58072 TTTTATCTTTATTTTAT
1 TTTTATCTTTATTTTAT
* *
58089 TTTTATTTTTGTTTTA-
1 TTTTATCTTTATTTTAT
*
58105 CTTT-TCTTTATTTTTTAT
1 TTTTATCTTTA--TTTTAT
58123 TTTTAT
1 TTTTAT
58129 TTATTTTCAC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 19 0.63
18 3 0.10
19 1 0.03
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATCTTTATTTTAT
Found at i:58096 original size:22 final size:22
Alignment explanation
Indices: 58057--58147 Score: 71
Period size: 22 Copynumber: 4.1 Consensus size: 22
58047 TTTTTTTAGG
* * *
58057 TTTATTTAATATTCATTTTATC
1 TTTATTTTATTTTCATTTTATT
*
58079 TTTATTTTATTTTTATTTT-TGT
1 TTTATTTTATTTTCATTTTAT-T
* *
58101 TTTACTTTTCTTTAT-TTTTTATT
1 TTTA-TTTTATTT-TCATTTTATT
58124 TTTA-TTTATTTTCACTTTTATT
1 TTTATTTTATTTTCA-TTTTATT
58146 TT
1 TT
58148 GTTTCATTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.02
21 7 0.13
22 29 0.53
23 16 0.29
24 2 0.04
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTCATTTTATT
Found at i:58131 original size:17 final size:17
Alignment explanation
Indices: 58083--58135 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
58073 TTTATCTTTA
58083 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
58099 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
58117 TTTTATTTTTATTTATT
1 TTTTATTTTTATTTATT
58134 TT
1 TT
58136 CACTTTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 29 0.94
18 2 0.06
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:58131 original size:27 final size:26
Alignment explanation
Indices: 58084--58136 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
58074 TTATCTTTAT
*
58084 TTTATTTTTATTTTTGTTTTACTTTTC
1 TTTATTTTTATTTTTGATTTA-TTTTC
58111 TTTATTTTTTATTTTT-ATTTATTTTC
1 TTTA-TTTTTATTTTTGATTTATTTTC
58137 ACTTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 5 0.21
27 8 0.33
28 11 0.46
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (26 bp):
TTTATTTTTATTTTTGATTTATTTTC
Found at i:58142 original size:17 final size:16
Alignment explanation
Indices: 58057--58155 Score: 67
Period size: 16 Copynumber: 6.0 Consensus size: 16
58047 TTTTTTTAGG
*
58057 TTTATTTAATATTCATT
1 TTTATTT-ATTTTCATT
*
58074 TTATCTTTATTTT-ATT
1 TT-TATTTATTTTCATT
* * *
58090 TTTATTTTTGTTTTACT
1 TTTATTTAT-TTTCATT
* *
58107 TTTCTTTATTTTTTATT
1 TTTATTTA-TTTTCATT
*
58124 TTTATTTATTTTCACT
1 TTTATTTATTTTCATT
58140 TTTATTT-TGTTTCATT
1 TTTATTTAT-TTTCATT
58156 ATTCTATTTT
Statistics
Matches: 65, Mismatches: 12, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
15 6 0.09
16 27 0.42
17 27 0.42
18 5 0.08
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTATTTATTTTCATT
Found at i:58152 original size:16 final size:17
Alignment explanation
Indices: 58089--58153 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
58079 TTTATTTTAT
* *
58089 TTTTATTTTTGTTTTAC
1 TTTTATTTATGTTTCAC
* * * *
58106 TTTTCTTTATTTTTTAT
1 TTTTATTTATGTTTCAC
58123 TTTTATTTAT-TTTCAC
1 TTTTATTTATGTTTCAC
58139 TTTTATTT-TGTTTCA
1 TTTTATTTATGTTTCA
58154 TTATTCTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
15 1 0.03
16 17 0.43
17 22 0.55
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (17 bp):
TTTTATTTATGTTTCAC
Found at i:58254 original size:59 final size:58
Alignment explanation
Indices: 58170--58345 Score: 176
Period size: 59 Copynumber: 2.9 Consensus size: 58
58160 TATTTTCTTT
** * * *
58170 AAATAAAAATAAAAAATATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGA
1 AAATAAATTTAAAAAA-AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
** *
58229 AAATCAAAGTTT-CCAAAGAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAA-TTTAAAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAA
* *
58288 AAATAAATTTAAAAAAAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCC
1 AAATAAATTT-AAAAAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
58346 CTGTACAAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
57 3 0.03
58 5 0.05
59 49 0.52
60 6 0.06
61 1 0.01
62 29 0.31
63 2 0.02
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (58 bp):
AAATAAATTTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:61789 original size:11 final size:11
Alignment explanation
Indices: 61775--61938 Score: 68
Period size: 11 Copynumber: 14.1 Consensus size: 11
61765 TATAGTTTTG
61775 TTATTTTTATT
1 TTATTTTTATT
*
61786 TTATTTGTATT
1 TTATTTTTATT
61797 TTATATTTTATGT
1 TTAT-TTTTAT-T
**
61810 ATATATTTTCCTT
1 -T-TATTTTTATT
**
61823 TTATATCCTA-T
1 TTAT-TTTTATT
*
61834 GTATTTATTA-T
1 TTATTT-TTATT
61845 TTATTTATTATT
1 TTATTT-TTATT
*
61857 ACTATTTATTAATAT
1 -TTATTT-TT-AT-T
*
61872 ATATTTTTATT
1 TTATTTTTATT
*
61883 TTATTTTTCCTT
1 TTATTTTT-ATT
61895 TTATTTTT-TAT
1 TTATTTTTAT-T
*
61906 TT-TTTTCATT
1 TTATTTTTATT
61916 TTA-TTTTATAT
1 TTATTTTTAT-T
*
61927 GTATTTTTATT
1 TTATTTTTATT
61938 T
1 T
61939 ATCTAATTAT
Statistics
Matches: 117, Mismatches: 20, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
10 14 0.12
11 49 0.42
12 26 0.22
13 12 0.10
14 12 0.10
15 4 0.03
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:61803 original size:18 final size:18
Alignment explanation
Indices: 61771--61807 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
61761 GTTTTATAGT
61771 TTTGTTATTTTTATTTTA
1 TTTGTTATTTTTATTTTA
61789 TTTG-TATTTTATATTTTA
1 TTTGTTATTTT-TATTTTA
61807 T
1 T
61808 GTATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTGTTATTTTTATTTTA
Found at i:61896 original size:12 final size:11
Alignment explanation
Indices: 61873--61922 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
61863 TATTAATATA
*
61873 TATTTTTATTT
1 TATTTTTCTTT
61884 TATTTTTCCTTT
1 TATTTTT-CTTT
*
61896 TATTTTT-TAT
1 TATTTTTCTTT
61906 T-TTTTTCATTT
1 TATTTTTC-TTT
61917 TATTTT
1 TATTTT
61923 ATATGTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 5 0.16
10 3 0.09
11 10 0.31
12 14 0.44
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (11 bp):
TATTTTTCTTT
Found at i:61898 original size:33 final size:33
Alignment explanation
Indices: 61839--61922 Score: 82
Period size: 33 Copynumber: 2.5 Consensus size: 33
61829 CCTATGTATT
*
61839 TATTATTTA-TTTATTATTACTATTTATTAATATA
1 TATT-TTTATTTTATTTTTACTATTTATT-ATATA
* * *
61873 TATTTTTATTTTATTTTTCCT-TTTATTTTTTA
1 TATTTTTATTTTATTTTTACTATTTATTATATA
*
61905 TTTTTTTCATTTTATTTT
1 TATTTTT-ATTTTATTTT
61923 ATATGTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
32 9 0.21
33 20 0.47
34 14 0.33
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (33 bp):
TATTTTTATTTTATTTTTACTATTTATTATATA
Found at i:61940 original size:21 final size:21
Alignment explanation
Indices: 61876--61926 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
61866 TAATATATAT
* *
61876 TTTTATTTTATTTTTCCTTTTA
1 TTTTATATT-TTTTTCATTTTA
*
61898 TTTTTTATTTTTTTCATTTTA
1 TTTTATATTTTTTTCATTTTA
61919 TTTTATAT
1 TTTTATAT
61927 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTATATTTTTTTCATTTTA
Found at i:61948 original size:93 final size:97
Alignment explanation
Indices: 61776--61949 Score: 223
Period size: 93 Copynumber: 1.8 Consensus size: 97
61766 ATAGTTTTGT
* * *
61776 TATTTTTATTTTATTTGTATTTTATATTTTATGTATATATTTTCCTTTTATATCCTATGTATTTA
1 TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
*
61841 TTATTTATTTATTATTACTATTTATTAATATA
66 TTATTTATTAATTATTACTATTTATTAATATA
* * * * *
61873 TATTTTTATTTTATTTTTCCTTT-TATTTT-T-TAT-TTTTTTCATTTTATTTTATATGTATTT-
1 TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
61933 TTATTTATCTAATTATT
66 TTATTTAT-TAATTATT
61950 TACTTATCTG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 8 0.12
93 29 0.43
94 3 0.04
95 1 0.01
96 6 0.09
97 20 0.30
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (97 bp):
TATTTTTATTTTATTTGTACTTTATATTTTATGTATATATTTTCATTTTATATCATATGTATTTA
TTATTTATTAATTATTACTATTTATTAATATA
Found at i:61979 original size:16 final size:16
Alignment explanation
Indices: 61838--61981 Score: 70
Period size: 17 Copynumber: 9.0 Consensus size: 16
61828 TCCTATGTAT
61838 TTATTATTTATTTATTA
1 TTATTATTT-TTTATTA
* * *
61855 TTACTATTTATTAATA
1 TTATTATTTTTTATTA
61871 -TA-TA-TTTTTATT-
1 TTATTATTTTTTATTA
*
61883 TTATTTTTCCTTTTATT-
1 TTATTATT--TTTTATTA
*
61900 TT-TTATTTTTT-TCA
1 TTATTATTTTTTATTA
*
61914 TT-TTATTTTATATGTA
1 TTATTATTTTTTAT-TA
* *
61930 TTTTTATTTATCTAATTA
1 TTATTATTT-T-TTATTA
* *
61948 TTTACTTATCTGTTATTA
1 -TTA-TTATTTTTTATTA
61966 TTATTATTTTTTATTA
1 TTATTATTTTTTATTA
61982 ATCTTATAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
13 9 0.09
14 17 0.18
15 4 0.04
16 23 0.24
17 26 0.27
18 8 0.08
19 4 0.04
20 5 0.05
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.69
Consensus pattern (16 bp):
TTATTATTTTTTATTA
Found at i:61981 original size:13 final size:13
Alignment explanation
Indices: 61838--61906 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 13
61828 TCCTATGTAT
61838 TTATTATTTATTTA
1 TTATTATTT-TTTA
* *
61852 TTATTACTATTTA
1 TTATTATTTTTTA
61865 TTAATATATATTTTTA
1 TT-AT-TAT-TTTTTA
**
61881 TT-TTATTTTTCC
1 TTATTATTTTTTA
61893 TT-TTATTTTTTA
1 TTATTATTTTTTA
61905 TT
1 TT
61907 TTTTTCATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
12 16 0.36
13 9 0.20
14 10 0.23
15 2 0.05
16 7 0.16
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTATTTTTTA
Found at i:62968 original size:17 final size:16
Alignment explanation
Indices: 62946--63003 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
62936 TTTAATATTC
*
62946 TTTTTATCTTTATTTTA
1 TTTTTATATTT-TTTTA
*
62963 TTTTTATTTTTGTTTTA
1 TTTTTATATTT-TTTTA
62980 CTTTCTT-TATTTTTTTA
1 -TTT-TTATATTTTTTTA
62997 TTTTTAT
1 TTTTTAT
63004 TTATTTTCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 2 0.06
16 4 0.11
17 20 0.57
18 7 0.20
19 2 0.06
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTTATATTTTTTTA
Found at i:62978 original size:11 final size:11
Alignment explanation
Indices: 62947--63022 Score: 66
Period size: 11 Copynumber: 6.8 Consensus size: 11
62937 TTAATATTCT
*
62947 TTTTATCTTTA
1 TTTTATTTTTA
62958 TTTTATTTTTA
1 TTTTATTTTTA
62969 TTTT-TGTTTTA
1 TTTTAT-TTTTA
* * *
62980 CTTTCTTTATTT
1 TTTTATTT-TTA
62992 TTTTATTTTTA
1 TTTTATTTTTA
*
63003 -TTTATTTTCA
1 TTTTATTTTTA
63013 CTTTTATTTT
1 -TTTTATTTT
63023 GTTTCATTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
10 10 0.19
11 26 0.49
12 17 0.32
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:63027 original size:16 final size:15
Alignment explanation
Indices: 62985--63028 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
62975 TTTTACTTTC
*
62985 TTTATTTTTTT-ATT
1 TTTATTTTTTTCACT
62999 TTTATTTATTTTCACT
1 TTTATTT-TTTTCACT
63015 TTTATTTTGTTTCA
1 TTTATTTT-TTTCA
63029 TTATTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 7 0.27
15 5 0.19
16 14 0.54
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTATTTTTTTCACT
Found at i:63157 original size:60 final size:60
Alignment explanation
Indices: 63055--63338 Score: 339
Period size: 60 Copynumber: 4.7 Consensus size: 60
63045 AATAAAAATA
** *
63055 AAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAA-TTTC
1 AAAAAAAAGGTTTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
63113 AAAAAAAAGGGTTTTTGAGGGAAAAGTTGGAAAGCATCATTTTTCCTTAAAAATAAATTTTCC
1 AAAAAAAA-GGTTTTTGAGGGAAAAGTT-GAAAGTATCAATTTTCCTTAAAAATAAATTTT-C
* * *
63176 AAAAAAAAGGTTTTTGA-GGAAAAGTTGAAAGTATGCAATTTTCCTTGAAAATCAAAGTTCC
1 AAAAAAAAGGTTTTTGAGGGAAAAGTTGAAAGTAT-CAATTTTCCTTAAAAAT-AAATTTTC
*
63237 AAAAAATA--TTTTTG-GGGAAAAGTTGAAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAAGGTTTTTGAGGGAAAAGTTG-AAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
63295 TAAAAAAAGGGTTTT-AAGGAAAAGTTTGAAAGTATCAATCTTCC
1 AAAAAAAAGGTTTTTGAGGGAAAAG-TTGAAAGTATCAATTTTCC
63339 CTGCATCAAA
Statistics
Matches: 194, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
58 20 0.10
59 48 0.25
60 57 0.29
61 43 0.22
62 17 0.09
63 9 0.05
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.32
Consensus pattern (60 bp):
AAAAAAAAGGTTTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:63208 original size:120 final size:118
Alignment explanation
Indices: 63055--63338 Score: 376
Period size: 120 Copynumber: 2.4 Consensus size: 118
63045 AATAAAAATA
** *
63055 AAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-AAA-TTTCAAAA
1 AAAAAAAAGGTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTCCAAAA
* *
63117 AAAAGGGTTTTTGAGGGAAAAGTTGGAAAGCATCATTTTTCCTTAAAAATAAATTTTCC
65 AAAA---TTTTTG-GGGAAAAGTTGAAAAGCATCAATTTTCCTTAAAAATAAATTTT-C
63176 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATGCAATTTTCCTTGAAAATCAAAGTTCCAAAA
1 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTAT-CAATTTTCCTTGAAAATCAAAGTTCCAAAA
* *
63241 AATATTTTTGGGGAAAAGTTGAAAAGTATCAATTTTCCTTAAAAATAAATTTTC
65 AAAATTTTTGGGGAAAAGTTGAAAAGCATCAATTTTCCTTAAAAATAAATTTTC
* * * *
63295 TAAAAAAAGGGTTTTAAGGAAAAGTTTGAAAGTATCAATCTTCC
1 AAAAAAAAGGTTTTTGAGGAAAAG-TTGAAAGTATCAATTTTCC
63339 CTGCATCAAA
Statistics
Matches: 147, Mismatches: 11, Indels: 12
0.86 0.06 0.07
Matches are distributed among these distances:
119 30 0.20
120 65 0.44
121 34 0.23
122 5 0.03
123 3 0.02
124 10 0.07
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.32
Consensus pattern (118 bp):
AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTCCAAAAA
AAATTTTTGGGGAAAAGTTGAAAAGCATCAATTTTCCTTAAAAATAAATTTTC
Found at i:64283 original size:45 final size:45
Alignment explanation
Indices: 63839--65331 Score: 934
Period size: 45 Copynumber: 33.2 Consensus size: 45
63829 TTGATGGTAC
* * *
63839 TCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
** * * * * *
63884 TCGAGGCAACCGTTCGTACCAGGGGCCATCTTCTGCCAATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* ** * * **
63929 TTGAGGCAAGAGCCCACACCAAGGTCC-GACTTGTGCCGATGGTTC
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
* * * * * *
63974 TCGAGGCCAA-CGCCCGCACGAA-GGCGTAGCATGTGTCGATGTTGT
1 TCGAGG-CAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGG
* * * * *
64019 TCGAGGCAACCGTCTGCACCGACGCCCAGC-TGTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * * ** *
64063 TTGAGGTAACTGCCCGTACCAAGGCCCAACTTGTGCCGATCATGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * * **
64108 TTGACGTAACTGCCCTCACCAAGGGCCATCTTGTGTTGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * *
64153 TCGAGGCAACCGCCCGCACAAAAGGTCGGCTTATGTCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * ** * **
64198 TCAAGGTAACCGCCCACACCAGGGGCCATTTTTTATCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* ** *
64243 TCGAAGCAAGAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGC
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * ** *
64288 TCGAGGCAACCTCCTGCACTAA-GGCCTAGCACGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGG
* ** * * * * * *
64333 TTGAGGCATTCGTCCACACCAA-GGCTCGGCATGTGCTGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGG
* * * * * * *
64378 TCGACGTAACTGCCCGTACC-AGGGTTCATCTTGTGTCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGG
* * * *
64423 TCGAGGCAACCGCCTGGACCAAGGGTC-GTCTTGTGCTGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
* * * * *
64468 TCGAGGAAACTGCCCGCACCAAAGGTC-GACTTGTGCAGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
* ** * **
64513 TCGAGGCAACCGCCCGCACCAGGGGCCATTTTCTATCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* ** *
64558 TCGAGGAAATAGCCCGCACCAAGGGCCAGCTTATGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* ** * * *
64603 TCAAGGCAACCAACCGCACC-AGTGGCCATCTTCTGCAGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGG
* * * *
64648 TCGAGGCAACCGCCCGTACCAAGGCCCAGCATGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * * *
64693 TTGACGCAACCACCCGCACCAGGGGCCATCTTGTGTCGATAGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * * *
64738 TCAAGGTAACCGTCTGCACCAAGGGTC-GACTAGTGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
* * * * * *
64783 TCAAGGCAACCGCCTGCACTAGGGGCCATCTTCTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * * *
64828 TCGAGACAACTGCCCACACCAAGGCCCAGCATGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * *
64873 TCGATGCAACCGCCCGTACC-AGAGGCCATCTTGTGCCGATGGTGA
1 TCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGG
* * * * * *
64918 TCGAGGTAACCACCCACACCAAGGGCC-GACTGGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
** * * * ** * *
64963 TTAAGGCAACTGCCTGCACGAA-GGCTTGACATGTGCCGATAGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGG
* * * * * * *
65008 TCGAGGTAACCGCCTGCACCACGGTCCAGCATGTGCCAATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * *
65053 TCGAGGCAACCACCTGCACCAA-GGCTCAGCATGTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGG
* * * *
65098 TCGAGGCAACCGCCCGTACCATGGCCCAGCATT-TGCCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGC-TTGTGCCGATGGTGG
* * * * * * * *
65143 TCGATGCGATCGCTCACACCAGGGGCCATCTTATGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * *
65188 TCGAGGCAATCG-CCGTACTAAGGGCCGGCTTGTGCCGATGGTGA
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * * * * *
65232 TCGAGGCAACCGCCCTGCACCAAAGGTCAGCATATGCCAATGGTGA
1 TCGAGGCAACCGCCC-GCACCAAGGGCCAGCTTGTGCCGATGGTGG
* * *
65278 TCGAGGCAACTGCCCGCACC-AGGGCCCAGCTTGTGCCAATGGCGG
1 TCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGG
65323 TCGAGGCAA
1 TCGAGGCAA
65332 GTGCTCGTAC
Statistics
Matches: 1083, Mismatches: 335, Indels: 60
0.73 0.23 0.04
Matches are distributed among these distances:
44 90 0.08
45 936 0.86
46 57 0.05
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG
Found at i:65358 original size:45 final size:45
Alignment explanation
Indices: 65218--65358 Score: 133
Period size: 45 Copynumber: 3.1 Consensus size: 45
65208 AGGGCCGGCT
* * * *
65218 TGTGCCGATGGTGATCGAGGCAACCGCCCTGCACCAAAGGTCAGCA
1 TGTGCCAATGGCGATCGAGGCAACTGCCC-GCACCAAAGGGCAGCA
* * *
65264 TATGCCAATGGTGATCGAGGCAACTGCCCGCACC--AGGGCCCAGCT
1 TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGG--CAGCA
* * * * *
65309 TGTGCCAATGGCGGTCGAGGCAAGTGCTCGTACCAAAGGGCAGCC
1 TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGGCAGCA
65354 TGTGC
1 TGTGC
65359 TGATAATGGT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
43 3 0.04
45 46 0.58
46 26 0.33
47 4 0.05
ACGTcount: A:0.22, C:0.30, G:0.32, T:0.16
Consensus pattern (45 bp):
TGTGCCAATGGCGATCGAGGCAACTGCCCGCACCAAAGGGCAGCA
Found at i:66155 original size:26 final size:26
Alignment explanation
Indices: 66119--66169 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
66109 TGACTTAGGT
*
66119 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
66145 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
66170 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:66670 original size:158 final size:158
Alignment explanation
Indices: 66283--66683 Score: 398
Period size: 158 Copynumber: 2.5 Consensus size: 158
66273 CGTACGCCCG
* * * *
66283 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACTGAGGTTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCGGAC-GAGGGTT
* * *
66348 ATGGCAGCAGGACCGATAGCACGCAGAGGGGGACCGGGTCGATCCCTGACTTGAGCATTATGCCT
65 ATGGTAGCAGGACCGACAGCACGCAGAGGGGGACCGGGTCAATCCCTGACTTGAGCATTATGCCT
* * *
66413 CTTCGACCGACTCAGCGCCTGCACGCTCG
130 CTTCGACCGACTCAACGCCTACACGCTCA
* * * * ** * * * *
66442 TTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAAATTGGACCGACGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CAATGTCTAAGCCCCAGTCGGA-CGAGGGT
* * * * * * * *
66506 TTTGGTAGCAGGATCGGCAGCATGCAG-GGGGGATCGGG-CTAATCCCTGACTTGTGTATTCTGC
64 TATGGTAGCAGGACCGACAGCACGCAGAGGGGGACCGGGTC-AATCCCTGACTTGAGCATTATGC
* *
66569 CTC-TCTGACCGACTGAACTTCC-ACACGCTCA
128 CTCTTC-GACCGACTCAAC-GCCTACACGCTCA
* *
66600 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCCAGTCGGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCGGA-CGAGGGTT
* *
66665 GTGGTAGCAGGACCAACAG
65 ATGGTAGCAGGACCGACAG
66684 TGGGATCGAC
Statistics
Matches: 190, Mismatches: 46, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
157 5 0.03
158 114 0.60
159 68 0.36
160 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGTCGGACGAGGGTTA
TGGTAGCAGGACCGACAGCACGCAGAGGGGGACCGGGTCAATCCCTGACTTGAGCATTATGCCTC
TTCGACCGACTCAACGCCTACACGCTCA
Found at i:66818 original size:26 final size:26
Alignment explanation
Indices: 66789--66841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
66779 GTTAACTTAG
* * *
66789 GCATACGGATTTTATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
66815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
66841 G
1 G
66842 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:67350 original size:26 final size:26
Alignment explanation
Indices: 67314--67366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
67304 GTTGGCTTAG
67314 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
67340 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
67366 G
1 G
67367 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:72786 original size:45 final size:45
Alignment explanation
Indices: 72734--74348 Score: 885
Period size: 45 Copynumber: 35.8 Consensus size: 45
72724 TGGGGAATGT
**
72734 GCCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * * * * *
72779 GCTCGCACC-AGATCGAGGCATGTGTCAATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCA-GCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * * **
72824 GTCCGTACCAGGGGCTATCTTCTACTGAT-GTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
72868 GCGCGCACCAAGGGTCGGCTTGTGTCGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** *
72913 GCTCGCACCAAGGGCCATCTTCTGCTAATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * *
72958 GCCTGCACAAAGGCCCAGCACGTGCCGATGGTGTTCGAGACAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
73003 GCCCGCACCAAGGGCCAGCATATGTCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * **
73048 GCCTACACC-AGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* *** * * *
73093 GCCTGCACCAAGGGTTGGCTTGTGTCGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * ** * ** * *
73138 TTCCGTATGAA-AGCCTAGCACGTGCCGATGGTGTTCGAGGCAATC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * * *
73183 ACCCATACCGAGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * ** *
73228 GCCCGTACCAAGACCCAGCATGTGCCGATGGTATTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
73273 GCCCGTA-CTAGGGCCCATCTTGTG-CGATGGTAGTCGAGGCAGCT
1 GCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
73317 GCCCGCACCAAGGGTCGGGTTATGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *** * * **
73362 ACCCGTACC-AGAGGCCA-TTTTTATTGATAGTGGTCGAGGTAAGA
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
73406 GCCCGTAGCAAGGGTCTGCTTGTGTCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
73451 GCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * **
73496 ACTCGCACCAAGGCCCAGCATGTGCCGATGATGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
73541 GCTCGGACTAAGGGCCTA-CTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
73586 GCCCGCA-CTAGGAGCCATCTTCTACCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGG-GCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
73631 GTCCGCACCAAGGCCCAGCATGTGTCGATGGTGTTTGAGGCAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
73676 GCCGGCACCAAGGCCCAGCATGTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** * **
73721 ACCTGCACCAA-GGCCTAGCATGTGCCGATGGTATTCAACGTAAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGA-GGCAACC
* * * *
73767 GCTCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * * * **
73812 ACCCGCACCAA-GGCTC-GACACGTGCTGATGGTGTTTGAGATAACC
1 GCCCGCACCAAGGGC-CAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
73857 GCCTGCAGCAGGGGCCATCTTTTACCGATGGTGGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGG-TCGAGGCAACC
* * * * * *
73903 GCCCGCACCAAGGCCCAGCATGTGCTGATGGTGTTTGACGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* *
73948 GCCTGCACC-AGGGTCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
73993 ACCCGCACAAAGGGTC-GACTGGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** *
74038 GCCCACACCAA-GGCTCGGCATGTATCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
74083 GCCTGCACCACA--GCCTAGCATGTACCGATGGTGTTCAATGCAACC
1 GCCCGCACCA-AGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
74128 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCAAGGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
74173 GCCCGTACCAAGGGCCGGCTTGGTGCCAATGTTGGTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCTT-GTGCCGATGGTGGTCGAGGCAACC
* * * ** * * * * * *
74219 GGCCGTACTAAGGGCTGGCATGTGTCGATGGTGATCAAAGGTAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC-GAGGCAACC
* ** **
74265 GCCCACACC-AGGGCCCCAGCTTGTGCCGATGGCAGTCGAGGCAAGT
1 GCCCGCACCAAGGG--CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * *
74311 GCCCATACGAAAGGG-CAGCCTGTGCCGATGATGGTCGA
1 GCCCGCAC-CAAGGGCCAGCTTGTGCCGATGGTGGTCGA
74349 TGCATGTGGC
Statistics
Matches: 1162, Mismatches: 368, Indels: 80
0.72 0.23 0.05
Matches are distributed among these distances:
44 114 0.10
45 883 0.76
46 142 0.12
47 19 0.02
48 4 0.00
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
Found at i:72875 original size:89 final size:90
Alignment explanation
Indices: 72761--73019 Score: 213
Period size: 89 Copynumber: 2.9 Consensus size: 90
72751 GCACGTGCCG
* * *
72761 ATGGTGGTCGAGGCAACCGCTCGCACC-A-GATCGAGGCATGTGTCAATGGTGTTCGAGGCAACC
1 ATGGTGGTCGAGGCAACAGCGCGCACCAAGGATC--GGCATGTGTCAATGGTGCTCGAGGCAACC
* * * *
72824 G-TCCGTACCAGGGGCTATCTTCTACTG
64 GCT-CGCACCAAGGGCCATCTTCTACTA
* * * * *
72851 AT-GTGGTCGAGGCAAGAGCGCGCACCAAGGGTCGGCTTGTGTCGATGGTGCTCGAGGTAACCGC
1 ATGGTGGTCGAGGCAACAGCGCGCACCAAGGATCGGCATGTGTCAATGGTGCTCGAGGCAACCGC
*
72915 TCGCACCAAGGGCCATCTTCTGCTA
66 TCGCACCAAGGGCCATCTTCTACTA
* * * ** * * * * * * *
72940 ATGGTGGTCGAGGTAACCGC-CTGCACAAAGGCCCAGCACGTGCCGATGGTGTTCGAGACAATCG
1 ATGGTGGTCGAGGCAACAGCGC-GCACCAAGGATCGGCATGTGTCAATGGTGCTCGAGGCAACCG
*
73004 CCCGCACCAAGGGCCA
65 CTCGCACCAAGGGCCA
73020 GCATATGTCG
Statistics
Matches: 136, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
89 69 0.51
90 64 0.47
91 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACAGCGCGCACCAAGGATCGGCATGTGTCAATGGTGCTCGAGGCAACCGC
TCGCACCAAGGGCCATCTTCTACTA
Found at i:75738 original size:184 final size:185
Alignment explanation
Indices: 75407--75777 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 185
75397 GTTGACTTAG
* * * * *
75407 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
* * *
75472 ACACGCAGGGAGGGATCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCGC
66 ACACGCAGGGAGAGACCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCAC
** *
75537 CCACACACTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * ** * * * *
75592 GCATATAGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAAGGTTACGACTGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
* * * * * *
75657 ACATGCAGGG-GAGACCGGGTCGAT-CCTCGGCTTGTGCATTCTGCCTCTCC-AGTCGGCTGAGC
66 ACACGCAGGGAGAGACCGGGCCGATCCCT-GACTTGTGCATTCTACCTCTCCGACT-AGCTGAGC
* * *
75719 ACCCGCACACTCATTTTGTGGGTTGGCTTAGGCATATAGAGTTTATTCCATGTCTAA
129 ACCCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
75776 GC
1 GC
75778 CCCAGTCAGA
Statistics
Matches: 156, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
183 5 0.03
184 90 0.58
185 61 0.39
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
ACACGCAGGGAGAGACCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCAC
CCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:75957 original size:26 final size:26
Alignment explanation
Indices: 75921--75973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
75911 GTTGACTTAG
75921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
75947 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
75973 G
1 G
75974 ATGAATCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:79614 original size:26 final size:26
Alignment explanation
Indices: 79585--79637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
79575 GTTAACTTAG
* * *
79585 GCATACGGATTTTATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
79611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
79637 G
1 G
79638 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:80144 original size:26 final size:26
Alignment explanation
Indices: 80108--80160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
80098 GTTGGCTTAG
80108 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
80134 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
80160 G
1 G
80161 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:85804 original size:45 final size:45
Alignment explanation
Indices: 85510--87117 Score: 804
Period size: 45 Copynumber: 35.8 Consensus size: 45
85500 TGGGGAATGT
*
85510 GCCCGCCACCAAGGGCCAGCACGTGCCGATGGT-GTCGAGGCAACC
1 GCCCG-CACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * *
85555 GTCGCCG--CC-AGATCGAGGCATGTGTCAATGGGTGTTCGAGGCAACC
1 G-C-CCGCACCAAGGGCCA-GCATGTGCCGAT-GGTGGTCGAGGCAACC
* * * * * * * * ***
85601 G-CCGTACCAGGGGCTATCTTCTACTGAT-GTGGTCGAGGCAGGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * ** * *
85644 GCGCGCACCAAGGGTC-GGTTGTG-CGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * ** *
85687 GCTCGCACC-AGGGCCATCTTCTGCTAATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * *
85731 GCCTGCA-CAAAGCCCAGCACATGCCGATGGTGTTCGAGACAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *
85775 GCCCGCACCAAGGGCCAGCATATGTCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * * **
85820 GCCTACACC-AGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAG-GGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* *** * * * *
85865 GCCTGCACCAAGGGTTGGCTTGTGTCGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * ** * * * *
85910 TTCCGTATGAA-AGCCTAGCACGTGCCGATGGTGTTCGAGGCAATC
1 GCCCGCACCAAGGGCC-AGCATGTGCCGATGGTGGTCGAGGCAACC
* ** * * *
85955 ACCCATATCGAGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* ** ** *
86000 GCCCGTACCAAGACCCAGCATGTGCCGATGGTATTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
86045 GCCCGTA-CTAGGGCCCATCTTGTGCCGATGGTAGTCGAGGCAGCT
1 GCCCGCACCAAGGG-CCAGCATGTGCCGATGGTGGTCGAGGCAACC
* ** * * *
86090 GCCCGCACCAAGGGTCAGGTTATGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * *** * *** * * **
86135 ACCCGTACC-AGAGGCCATTTTTTATTGATAGTGGTCGAGGTAAGA
1 GCCCGCACCAAG-GGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
86180 GCCCGTAGCAAGGGTCTGCTTGTGTCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
86225 GCCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * **
86270 ACTCGCACCAAGGCCCAGCATGTGCCGATGATGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86315 GCTCGGACTAAGGGCCTA-CTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCC-AGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
86360 GCCCGCA-CTAGGAGCCATCTTCTACCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGG-GCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86405 GTCCGCACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *
86450 GCCGGTACCAAGGCCCAGCATGTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * ** * * *
86495 ACCTGCACCAA-GGCCTAGCATGTGCCGATGGTATTCAACGTAACC
1 GCCCGCACCAAGGGCC-AGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86540 GCTCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * **
86585 ACCCGCACCAA-AGCTC-GACACGTGCTGATGGTGTTTGAGATAACC
1 GCCCGCACCAAGGGC-CAG-CATGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
86630 GCCTGCAGCAGGGGCCATCTTTTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86675 GCCCGCACCAAGGCCCAGCATGTGCTGATGGTGTTTGACGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * *
86720 GCCTGCACC-AGGGTCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGG-CCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * *
86765 ACCGGCACAAAGGGCC-G-ACTGGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCA-T-GTGCCGATGGTGGTCGAGGCAACC
* * ** *
86810 GCCCACACCAA-GGCTCGGCATGTATCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86855 GCCTGCACCACA--GCCTAGCATGTACCGATGGTGTTCAATGCAACC
1 GCCCGCACCA-AGGGCC-AGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * *
86900 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCAAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
86945 GCCCGTACCAAGGGCCGGCTTGTGCCAATGTTGGTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * * * *
86990 GGCCGTACTAAGGGCTGGCATGTGTCGATGGTGATCAAGGTAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
* * ** **
87035 GCCCACACC-AGGGCCCAGCTTGTGCCGATGGCAGTCGAGGCAAGT
1 GCCCGCACCAAGGG-CCAGCATGTGCCGATGGTGGTCGAGGCAACC
** * * *
87080 GCCCATACGAAAGGG-CAGCCTGTGCCGATGATGGTCGA
1 GCCCGCAC-CAAGGGCCAGCATGTGCCGATGGTGGTCGA
87118 TGCATGTGGC
Statistics
Matches: 1155, Mismatches: 362, Indels: 92
0.72 0.22 0.06
Matches are distributed among these distances:
42 8 0.01
43 45 0.04
44 100 0.09
45 946 0.82
46 48 0.04
47 8 0.01
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACC
Found at i:87887 original size:26 final size:26
Alignment explanation
Indices: 87851--87903 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
87841 GTTGACTTAG
87851 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
87877 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
87903 G
1 G
87904 ATCCTCGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:88507 original size:184 final size:185
Alignment explanation
Indices: 88176--88546 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 185
88166 GTTGACTTAG
* * * *
88176 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
* * *
88241 ACACGCAGGGAGGGATCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCGC
66 ACACGCAGGGAGAGACCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCAC
** *
88306 CCACACACTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * ** * * * *
88361 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTACGACTGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
* * * * * *
88426 ACATGCAGGG-GAGACCGGGTCGAT-CCTCGGCTTGTGCATTCTGCCTCTCC-AGTCGGCTGAGC
66 ACACGCAGGGAGAGACCGGGCCGATCCCT-GACTTGTGCATTCTACCTCTCCGACT-AGCTGAGC
* *
88488 ACCCGCACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAA
129 ACCCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
88545 GC
1 GC
88547 CCCAGTCAGA
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
183 5 0.03
184 91 0.58
185 62 0.39
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGCA
ACACGCAGGGAGAGACCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGACTAGCTGAGCAC
CCACACACTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:88726 original size:26 final size:26
Alignment explanation
Indices: 88690--88742 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
88680 GTTGACTTAG
88690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
88716 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
88742 G
1 G
88743 ATGAATCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:94130 original size:45 final size:45
Alignment explanation
Indices: 94081--95386 Score: 333
Period size: 45 Copynumber: 28.7 Consensus size: 45
94071 GGCCAGCTTA
* * *
94081 TGCCGATGGTGGTCGAGGCAACCGTCCGCACGAATGCCTAGCACG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * *
94126 TGCCGATGGTGTTCGAGGCAACCGCCCACACCG-AGGCCCAACATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAATGCCCAGCATG
* *
94171 TGCCGATGGTGGTCGAGGTAACCGCCCGCACTGAGT-CCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCAC-GAATGCCCAGCATG
* * * * ** * **
94216 TGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCA-TTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * ** * * *** *
94260 TGCCGATGTTGGTCGAGGCAACTGCCCGTACCAGCGGCTATTTTC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * * * *
94305 TACCGATGGTGCTCGAGGCAACTGTCCGCACCAAGGCCAAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
*** * * * * ** *
94350 TGCCGATCACGTTCGAGGCAACCGCCCTCACCAAGGCAAAGTATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * * * * * *
94395 TGCCGATGGTGTTCGATGCAACCACCCGTACCAAGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * ** *
94440 TGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGGTC-GTCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAG-CATG
* ** * * *
94485 TGCCGATGGTGGTCGAGGCAACTGGTCGCACCAAGGGTCGACCCTCACCAAG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAA---T-G--CC-CAGCATG
* * ** * * * *
94537 -GCTCGGCAT-GT-GCCGATGGTGTTCAACATAACCGCCCGCACTAGGGGCCATCTTT
1 TGC-C-G-ATGGTGGTCGA--G-G--CAAC-----CGCCCGCACGAATGCCCAGCATG
** * * ** * ** *
94592 TGTTGATAGTGGTCGAGGCAACCACCTACACCAATGGTC-GTCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAG-CATG
* * * * ** *
94637 TGCCAATAGTGGTCGAGGCAACCGCCCGCACCAAGGGTCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * ** * ** * *** *
94682 TGCAGATAGTGGTTGAGGCAACCGCCCATACCAGGGGCCATTTTT
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * ** * * * *
94727 TACTGATGGTGGTCAAGGAAAGAGCCCGCACCAAGGGCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* ** * *
94772 TGCCGATGGTGGTCGAGGCAACCTCCCATACTAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
** * * * * *
94817 TGCCGATGGTGGTCGAGGCAAGAGCCTGCACTAA-GAGCCGGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATG-CCCAGCATG
* * * * * ** * * * *
94862 TGTCGATGGTGCTCGAGGTAACCACCCGCACTAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * *
94907 TACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * *
94952 TGCTGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCA--ATGAG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCAT--G
* * * * * * * * * *
94997 TGCCGATTGTGTTCGACGCAACCGCCCACAC-TAGGGCCATCTTA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * ** *
95041 TGCCGATGGTGGTGGAGGCAACCGCCCGTACCAAGGGTCGGC-TAG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCAT-G
* * * * *
95086 TGCCAATGGTGCTCGAGGCAACCGCCCGCACCAAGGCTC-G-ATACG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCAT--G
* * * ** *
95131 TGCCGATGGTGTTCAAGGCAACCGCCCACACCTACGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * * * * * *
95176 TGCCGATGGTGATCGACGCAACCGCTCGCACCAAGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * ** * * *
95221 TGCCGATGGTGGTCGAGGTAAACATCCGCACCGAAGGTCGA-C-TGG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAATGCCCAGCAT-G
* * * * * * *
95266 TGCCGATGGTGTTCGAGGCAACCGCCTGTACCAAGGCTCGGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * * ** ** *
95311 TGCCGATGGTGGTCCAGGCAACCGCTCGCACCACGGCTTAGTATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
* * *
95356 TGCCGATGGTGTTCGATGCAACTGCCCGCAC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCAC
95387 CAGGGGCCAT
Statistics
Matches: 946, Mismatches: 267, Indels: 96
0.72 0.20 0.07
Matches are distributed among these distances:
43 2 0.00
44 78 0.08
45 800 0.85
46 14 0.01
47 2 0.00
49 1 0.00
50 4 0.00
51 2 0.00
52 9 0.01
53 6 0.01
54 6 0.01
55 8 0.01
56 2 0.00
57 4 0.00
58 1 0.00
62 7 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACGAATGCCCAGCATG
Found at i:94237 original size:90 final size:89
Alignment explanation
Indices: 94060--95386 Score: 373
Period size: 90 Copynumber: 14.6 Consensus size: 89
94050 ACAGGCATAT
* * * * * *
94060 CCCGCACCAAGGGCCAGCTTATGCCGATGGTGGTCGAGGCAACCGTCCGCACGAATGCCTAGCAC
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACGAGT-CCTAGCAT
94125 GTGCCGATGGTGTTCGAGGCAACCG
65 GTGCCGATGGTGTTCGAGGCAACCG
* * * * *
94150 CCCACACCGAGGCCCAACATGTGCCGATGGTGGTCGAGGTAACCGCCCGCACTGAGTCCCAGCAT
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCAC-GAGTCCTAGCAT
*
94215 GTGCCGATGGTGTTCGATGCAACCG
65 GTGCCGATGGTGTTCGAGGCAACCG
* * ** * * * * ***
94240 CCTGCACCAGGGGCC-ATTTGTGCCGATGTTGGTCGAGGCAACTGCCCGTACCAG-CGGCTATTT
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACGAGTC--CTAGCA
* * * *
94303 TCTACCGATGGTGCTCGAGGCAACTG
64 TGTGCCGATGGTGTTCGAGGCAACCG
* *** * * * * ** *
94329 TCCGCACCAA-GGCCAAGCATGTGCCGATCACGTTCGAGGCAACCGCCCTCACCAAGGCAAAGTA
1 CCCGCACCAAGGGCCAA-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAGTCCTAGCA
* *
94393 TGTGCCGATGGTGTTCGATGCAACCA
64 TGTGCCGATGGTGTTCGAGGCAACCG
* * * * * *
94419 CCCGTACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGGTCGT--C
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-C--GAGTCCTAGC
* * *
94482 TTGTGCCGATGGTGGTCGAGGCAACTG
63 ATGTGCCGATGGTGTTCGAGGCAACCG
** * * *
94509 GTCGCACCAAGGGTCGACCCTCACCAAG-GCTCGGCAT-GT-GCCGATGGTGTTCAACATAACCG
1 CCCGCACCAA-GG--G---C-CAACATGTGC-C-G-ATGGTGGTCGA--G-G--CAAC-----CG
* * * * * ** * * *
94571 CCCGCACTAGGGGCC-ATCTTTTGTTGATAGTGGTCGAGGCAACCA
46 CCCGCAC--GAGTCCTAGCATGTGCCGATGGTGTTCGAGGCAACCG
** * * ** * * * *
94616 CCTACACCAATGGTCGTCTTGTGCCAATAGTGGTCGAGGCAACCGCCCGCACCAAGGGT-C-AGC
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-C--GAGTCCTAGC
* * *
94679 TTGTGCAGATAGTGGTT-GAGGCAACCG
63 ATGTGCCGATGGT-GTTCGAGGCAACCG
** * *** * * * * * ** * * *
94706 CCCATACCAGGGGCCATTTTTTACTGATGGTGGTCAAGGAAAGAGCCCGCACCAAGGGCC-AGCT
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGA-GTCCTAGCA
* *
94770 TGTGCCGATGGTGGTCGAGGCAACCT
64 TGTGCCGATGGTGTTCGAGGCAACCG
** * * * ** * *
94796 CCCATACTAAGGCCCAGCATGTGCCGATGGTGGTCGAGGCAAGAGCCTGCACTAAGAG-CC-GGC
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCAC---GAGTCCTAGC
* * * * *
94859 TTGTGTCGATGGTGCTCGAGGTAACCA
63 ATGTGCCGATGGTGTTCGAGGCAACCG
* * * * * * * * *
94886 CCCGCACTAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCAT
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAGTCCTAGCAT
* * *
94951 GTGCTGATGGTGGTCGAGGCAACCA
65 GTGCCGATGGTGTTCGAGGCAACCG
* * * * * * * * * * *
94976 CCTGCACCAAGGCCCAATGA-GTGCCGATTGTGTTCGACGCAACCGCCCACACTAGGGCC-ATCT
1 CCCGCACCAAGGGCCAA-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACGA-GTCCTAGCA
* * *
95039 TATGCCGATGGTGGTGGAGGCAACCG
64 TGTGCCGATGGTGTTCGAGGCAACCG
* * ** * * * * *
95065 CCCGTACCAAGGGTCGGC-TAGTGCCAATGGTGCTCGAGGCAACCGCCCGCACCAAG-GCTCG-A
1 CCCGCACCAAGGGCCAACAT-GTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAGTCCTAGCA
*
95127 TACGTGCCGATGGTGTTCAAGGCAACCG
64 T--GTGCCGATGGTGTTCGAGGCAACCG
* * * * * * * * * * * *
95155 CCCACACCTACGCCCAGCATGTGCCGATGGTGATCGACGCAACCGCTCGCACCAAGGGCC-ATCT
1 CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGA-GTCCTAGCA
* * * *
95219 TGTGCCGATGGTGGTCGAGGTAAACA
64 TGTGCCGATGGTGTTCGAGGCAACCG
* * * * * * * * *
95245 TCCGCACCGAA-GGTCGAC-TGGTGCCGATGGTGTTCGAGGCAACCGCCTGTACCAAG-GCTCGG
1 CCCGCACC-AAGGGCCAACAT-GTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CGAGTCCT-AG
* *
95307 CATGTGCCGATGGTGGTCCAGGCAACCG
62 CATGTGCCGATGGTGTTCGAGGCAACCG
* * * ** * * *
95335 CTCGCACC-ACGGCTTAGTATGTGCCGATGGTGTTCGATGCAACTGCCCGCAC
1 CCCGCACCAAGGGC-CAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCAC
95387 CAGGGGCCAT
Statistics
Matches: 907, Mismatches: 265, Indels: 131
0.70 0.20 0.10
Matches are distributed among these distances:
87 1 0.00
88 12 0.01
89 136 0.15
90 639 0.70
91 26 0.03
92 6 0.01
93 1 0.00
95 4 0.00
96 3 0.00
97 10 0.01
98 6 0.01
99 5 0.01
100 9 0.01
101 2 0.00
102 4 0.00
104 1 0.00
106 7 0.01
107 35 0.04
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (89 bp):
CCCGCACCAAGGGCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACGAGTCCTAGCATG
TGCCGATGGTGTTCGAGGCAACCG
Found at i:94398 original size:179 final size:180
Alignment explanation
Indices: 94060--94461 Score: 450
Period size: 179 Copynumber: 2.2 Consensus size: 180
94050 ACAGGCATAT
* * * * * * ** * ***
94060 CCCGCACCAAGGGCCAGCTTATGCCGATGGTGGTCGAGGCAACCGTCCGCACGAATGCCTA-GCA
1 CCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGTACCAGCGGCTATTTT
* * * ***
94124 CGTGCCGATGGTGTTCGAGGCAACCGCCCACACCGAGGCCCAACATGTGCCGATGGTGGTCGAGG
66 C-TACCGATGGTGCTCGAGGCAACCGCCCACACCAAGGCCCAACATGTGCCGATCACGGTCGAGG
* ** * ** *
94189 TAACCGCCCGCACTGAGTCCCAGCATGTGCCGATGGTGTTCGATGCAACCG
130 CAACCGCCCGCACCAAGGCAAAGCATGTGCCGATGGTGTTCGATGCAACCA
* * *
94240 CCTGCACCAGGGGCCAT-TTGTGCCGATGTTGGTCGAGGCAACTGCCCGTACCAGCGGCTATTTT
1 CCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGTACCAGCGGCTATTTT
* * * *
94304 CTACCGATGGTGCTCGAGGCAACTGTCCGCACCAAGG-CCAAGCATGTGCCGATCACGTTCGAGG
66 CTACCGATGGTGCTCGAGGCAACCGCCCACACCAAGGCCCAA-CATGTGCCGATCACGGTCGAGG
* *
94368 CAACCGCCCTCACCAAGGCAAAGTATGTGCCGATGGTGTTCGATGCAACCA
130 CAACCGCCCGCACCAAGGCAAAGCATGTGCCGATGGTGTTCGATGCAACCA
*
94419 CCCGTACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAAC
1 CCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAAC
94462 CGCCTGCACC
Statistics
Matches: 181, Mismatches: 38, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
178 4 0.02
179 138 0.76
180 39 0.22
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (180 bp):
CCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGTACCAGCGGCTATTTT
CTACCGATGGTGCTCGAGGCAACCGCCCACACCAAGGCCCAACATGTGCCGATCACGGTCGAGGC
AACCGCCCGCACCAAGGCAAAGCATGTGCCGATGGTGTTCGATGCAACCA
Found at i:94501 original size:135 final size:135
Alignment explanation
Indices: 94060--95508 Score: 816
Period size: 135 Copynumber: 10.6 Consensus size: 135
94050 ACAGGCATAT
* * * * * * *
94060 CCCGCACCAAGGGCCAGCTTATGCCGATGGTGGTCGAGGCAACCGTCCGCACGAATGCCTAGCAC
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTAT
* * * * * *
94125 GTGCCGATGGTGTTCGAGGCAACCGCCCACACCGAGGCCCAACATGTGCCGATGGTGGTCGAGGT
66 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGC
94190 AACCG
131 AACCG
** ** * * * * * * *
94195 CCCGCACTGAGTCCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCA-TTT
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTAT
* * * * * * * * *
94259 GTGCCGATGTTGGTCGAGGCAACTGCCCGTACC-AGCGGCTATTTTCTACCGATGGTGCTCGAGG
66 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAG-GGCCATCTTGTGCCGATGGTGGTCGAGG
*
94323 CAACTG
130 CAACCG
* * *** * * **
94329 TCCGCACCAA-GGCCAAGCATGTGCCGATCACGTTCGAGGCAACCGCCCTCACCAAGGCAAAGTA
1 CCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTA
* * *
94393 TGTGCCGATGGTGTTCGATGCAACCACCCGTACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGG
94458 CAACCG
130 CAACCG
* * * **
94464 CCTGCACCAAGGGTC-GTCTTGTGCCGATGGTGGTCGAGGCAACTGGTCGCACCAAGGGTCGACC
1 CCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA--G--G--C
** * * * *
94528 CTCACCAAG-GCTCGGCAT-GTG-CCGATGGTGTTCAACATAACCGCCCGCACTAGGGGCCATCT
59 C-CAGTATGTGC-C-G-ATGGTGTTCGA--G-G-----C--AACCGCCCGCACCAAGGGCCATCT
* ** * *
94590 TTTGTTGATAGTGGTCGAGGCAACCA
110 TGTGCCGATGGTGGTCGAGGCAACCG
** * * * * **
94616 CCTACACCAATGGTC-GTCTTGTGCCAATAGTGGTCGAGGCAACCGCCCGCACCAAGGGTCAGCT
1 CCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG-T
* * ** * * * * * *
94680 -TGTGCAGATAGTGGTT-GAGGCAACCGCCCATACCAGGGGCCATTTTTTACTGATGGTGGTCAA
64 ATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGA
* **
94743 GGAAAGAG
128 GGCAACCG
* ** * *
94751 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCTCCCATACTAAGGCCCAGCAT
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTAT
* ** * * * ** * * *
94816 GTGCCGATGGTGGTCGAGGCAAGAGCCTGCACTAAGAGCCGGCTTGTGTCGATGGTGCTCGAGGT
66 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGC
*
94881 AACCA
131 AACCG
* * * * * *
94886 CCCGCACTAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCAT
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTAT
* * * * * ** * * *
94951 GTGCTGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAAT-GAGTGCCGATTGTGTTCGACG
66 GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCGATGGTGGTCGAGG
95015 CAACCG
130 CAACCG
* * * * * * ** *
95021 CCCACA-CTAGGGCCATCTTATGCCGATGGTGGTGGAGGCAACCGCCCGTACCAAGGGTCGGCTA
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG-TA
* * * *
95085 -GTGCCAATGGTGCTCGAGGCAACCGCCCGCACCAA-GGCTCGATAC--GTGCCGATGGTGTTCA
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGC-C-AT-CTTGTGCCGATGGTGGTCG
95146 AGGCAACCG
127 AGGCAACCG
* * * * * * * * * *
95155 CCCACACCTACGCCCAGCATGTGCCGATGGTGATCGACGCAACCGCTCGCACCAAGGGCCA-TCT
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGT-A
* * * ** * * * *
95219 TGTGCCGATGGTGGTCGAGGTAAACATCCGCACCGAAGGTCGA-CTGGTGCCGATGGTGTTCGAG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACC-AAGGGCCATCTTGTGCCGATGGTGGTCGAG
95283 GCAACCG
129 GCAACCG
* * * * * * * **
95290 CCTGTACCAA-GGCTCGGCATGTGCCGATGGTGGTCCAGGCAACCGCTCGCACCACGGCTTAGTA
1 CCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTA
* * * * * *
95354 TGTGCCGATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCATCTTATGCCAATGGTGGTTGAGG
65 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGG
* **
95419 TAATTG
130 CAACCG
** * ** ** * * * *
95425 CCCGCACTGAGGGTC-GAAATGTGTTGATGGTGATCGAGGCAACAGCCCGCACCAGGGCCTAGCT
1 CCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG-T
* *
95489 -TGTGCCGATGGCGGTCGAGG
64 ATGTGCCGATGGTGTTCGAGG
95509 TAAGTGCCCA
Statistics
Matches: 992, Mismatches: 270, Indels: 104
0.73 0.20 0.08
Matches are distributed among these distances:
133 8 0.01
134 212 0.21
135 631 0.64
136 12 0.01
137 4 0.00
139 1 0.00
141 3 0.00
142 8 0.01
143 7 0.01
144 5 0.01
145 7 0.01
146 2 0.00
148 1 0.00
150 2 0.00
152 89 0.09
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (135 bp):
CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGTAT
GTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGC
AACCG
Found at i:94650 original size:152 final size:152
Alignment explanation
Indices: 94374--94675 Score: 388
Period size: 152 Copynumber: 2.0 Consensus size: 152
94364 GAGGCAACCG
* * ** *
94374 CCCTCACCAAGGCAAAGTATGTGCCGATGGTGTTCGATGCAACCACCCGTACCAAGGGCCATCTT
1 CCCTCACCAAGGCAAAGCATGTGCCGATGGTGTTCAACACAACCACCCGCACCAAGGGCCATCTT
* * * * *
94439 GTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGGTCGTCTTGTGCCGATGGTGGTCGAGGC
66 GTGCCGATAGTGGTCGAGGCAACCACCTACACCAAGGGTCGTCTTGTGCCAATAGTGGTCGAGGC
* **
94504 AACTGGTCGCACCAAGGGTCGA
131 AACCGCCCGCACCAAGGGTCGA
*** * * * *
94526 CCCTCACCAAGGCTCGGCATGTGCCGATGGTGTTCAACATAACCGCCCGCACTAGGGGCCATCTT
1 CCCTCACCAAGGCAAAGCATGTGCCGATGGTGTTCAACACAACCACCCGCACCAAGGGCCATCTT
* ** *
94591 TTGTTGATAGTGGTCGAGGCAACCACCTACACCAATGGTCGTCTTGTGCCAATAGTGGTCGAGGC
66 GTGCCGATAGTGGTCGAGGCAACCACCTACACCAAGGGTCGTCTTGTGCCAATAGTGGTCGAGGC
94656 AACCGCCCGCACCAAGGGTC
131 AACCGCCCGCACCAAGGGTC
94676 AGCTTGTGCA
Statistics
Matches: 126, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
152 126 1.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (152 bp):
CCCTCACCAAGGCAAAGCATGTGCCGATGGTGTTCAACACAACCACCCGCACCAAGGGCCATCTT
GTGCCGATAGTGGTCGAGGCAACCACCTACACCAAGGGTCGTCTTGTGCCAATAGTGGTCGAGGC
AACCGCCCGCACCAAGGGTCGA
Found at i:95456 original size:180 final size:178
Alignment explanation
Indices: 94750--95504 Score: 615
Period size: 180 Copynumber: 4.2 Consensus size: 178
94740 CAAGGAAAGA
* * * * * *
94750 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCTCC-CATACTAAGGCCCAG
1 GCCCGCACCAA-GGCTCGGCATGTGCCGATGGTGGTCAAGGCAACCGCCGC--ACCACGGCCCAG
* * * ** * * * ** * * *
94813 CATGTGCCGATGGTGGTCGAGGCAAGAGCCTGCACTAAGAGCCGGCTTGTGTCGATGGTGCTCGA
63 TATGTGCCGATGGTGTTCGACGCAACCGCCCGCAC-CAGGGCCATCTTATGCCGATGGTGGTCGA
* * * * * ** * *
94878 GGTAACCACCCGCA-CTAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACC
127 GGTAAACGCCCGCACCGAGGGTCGA-CTAGTGCCGATGGTGATCGAGGCAACC
* * * * * * *
94930 GCCCGCACCAAGGCCCAGCATGTGCTGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAATG
1 GCCCGCACCAAGGCTCGGCATGTGCCGATGGTGGTCAAGGCAACCGCC-GCACCACGGCCCAGT-
* * * *
94995 A-GTGCCGATTGTGTTCGACGCAACCGCCCACACTAGGGCCATCTTATGCCGATGGTGGTGGAGG
64 ATGTGCCGATGGTGTTCGACGCAACCGCCCGCACCAGGGCCATCTTATGCCGATGGTGGTCGAGG
* * * * * * *
95059 CAACCGCCCGTACCAAGGGTCGGCTAGTGCCAATGGTGCTCGAGGCAACC
129 TAAACGCCCGCACCGAGGGTCGACTAGTGCCGATGGTGATCGAGGCAACC
** * * * *
95109 GCCCGCACCAAGGCTCGATACGTGCCGATGGTGTTCAAGGCAACCGCCCACACCTAC-GCCCAGC
1 GCCCGCACCAAGGCTCGGCATGTGCCGATGGTGGTCAAGGCAACCG-CCGCACC-ACGGCCCAGT
* * *
95173 ATGTGCCGATGGTGATCGACGCAACCGCTCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAG
64 ATGTGCCGATGGTGTTCGACGCAACCGCCCGCACC-AGGGCCATCTTATGCCGATGGTGGTCGAG
** * * *
95238 GTAAACATCCGCACCGAAGGTCGACTGGTGCCGATGGTGTTCGAGGCAACC
128 GTAAACGCCCGCACCGAGGGTCGACTAGTGCCGATGGTGATCGAGGCAACC
* * * **
95289 GCCTGTACCAAGGCTCGGCATGTGCCGATGGTGGTCCAGGCAACCGCTCGCACCACGGCTTAGTA
1 GCCCGCACCAAGGCTCGGCATGTGCCGATGGTGGTCAAGGCAACCGC-CGCACCACGGCCCAGTA
* * * *
95354 TGTGCCGATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCATCTTATGCCAATGGTGGTTGAGG
65 TGTGCCGATGGTGTTCGACGCAACCGCCCGCACCA-GGGCCATCTTATGCCGATGGTGGTCGAGG
** * * ** *
95419 TAATTGCCCGCACTGAGGGTCGA-AATGTGTTGATGGTGATCGAGGCAACA
129 TAAACGCCCGCACCGAGGGTCGACTA-GTGCCGATGGTGATCGAGGCAACC
* * * *
95469 GCCCGCACCAGGGC-CTAGCTTGTGCCGATGGCGGTC
1 GCCCGCACCAAGGCTC-GGCATGTGCCGATGGTGGTC
95505 GAGGTAAGTG
Statistics
Matches: 461, Mismatches: 100, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
178 1 0.00
179 136 0.30
180 322 0.70
181 1 0.00
182 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (178 bp):
GCCCGCACCAAGGCTCGGCATGTGCCGATGGTGGTCAAGGCAACCGCCGCACCACGGCCCAGTAT
GTGCCGATGGTGTTCGACGCAACCGCCCGCACCAGGGCCATCTTATGCCGATGGTGGTCGAGGTA
AACGCCCGCACCGAGGGTCGACTAGTGCCGATGGTGATCGAGGCAACC
Found at i:95499 original size:45 final size:44
Alignment explanation
Indices: 94566--95508 Score: 539
Period size: 45 Copynumber: 21.0 Consensus size: 44
94556 TGTTCAACAT
* * * ** *
94566 AACCGCCCGCACTAGGGGCCATCTTTTGTTGATAGTGGTCGAGGC
1 AACCGCCCGCACCA-GGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* ** * * * *
94611 AACCACCTACACCAATGGTC-GTCTTGTGCCAATAGTGGTCGAGGC
1 AACCGCCCGCACC-AGGGCCAG-CTTGTGCCGATGGTGGTCGAGGC
* * * *
94656 AACCGCCCGCACCAAGGGTCAGCTTGTGCAGATAGTGGTTGAGGC
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
** ** * * * * *
94701 AACCGCCCATACCAGGGGCCATTTTTTACTGATGGTGGTCAAGGA
1 AACCGCCCGCACCA-GGGCCAGCTTGTGCCGATGGTGGTCGAGGC
**
94746 AAGAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* ** * * *
94791 AACCTCCCATACTAAGGCCCAGCATGTGCCGATGGTGGTCGAGGC
1 AACCGCCCGCAC-CAGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
** * * * * * * *
94836 AAGAGCCTGCACTAAGAGCCGGCTTGTGTCGATGGTGCTCGAGGT
1 AACCGCCCGCAC-CAGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * * * *
94881 AACCACCCGCACTAGGGGCCATCTTCTACCGATGGTGGTCGAGGC
1 AACCGCCCGCACCA-GGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * *
94926 AACCGCCCGCACCAAGGCCCAGCATGTGCTGATGGTGGTCGAGGC
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * * * * * * *
94971 AACCACCTGCACCAAGGCCCA-ATGAGTGCCGATTGTGTTCGACGC
1 AACCGCCCGCACC-AGGGCCAGCT-TGTGCCGATGGTGGTCGAGGC
* * * * *
95016 AACCGCCCACACTAGGGCCATCTTATGCCGATGGTGGTGGAGGC
1 AACCGCCCGCACCAGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * * * * *
95060 AACCGCCCGTACCAAGGGTCGGCTAGTGCCAATGGTGCTCGAGGC
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * * * *
95105 AACCGCCCGCACCAAGGCTC-GATACGTGCCGATGGTGTTCAAGGC
1 AACCGCCCGCACCAGGGC-CAGCT-TGTGCCGATGGTGGTCGAGGC
* * * * * *
95150 AACCGCCCACACCTACGCCCAGCATGTGCCGATGGTGATCGACGC
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* * *
95195 AACCGCTCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGT
1 AACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
* ** * * * *
95240 AAACATCCGCACCGAAGGTC-GACTGGTGCCGATGGTGTTCGAGGC
1 AACCGCCCGCACC-AGGGCCAG-CTTGTGCCGATGGTGGTCGAGGC
* * * * * *
95285 AACCGCCTGTACCAAGGCTCGGCATGTGCCGATGGTGGTCCAGGC
1 AACCGCCCGCACCAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGC
* * * * *
95330 AACCGCTCGCACCACGGCTTAG-TATGTGCCGATGGTGTTCGATGC
1 AACCGCCCGCACCAGGGC-CAGCT-TGTGCCGATGGTGGTCGAGGC
* * * * * *
95375 AACTGCCCGCACCAGGGGCCATCTTATGCCAATGGTGGTTGAGGT
1 AACCGCCCGCACCA-GGGCCAGCTTGTGCCGATGGTGGTCGAGGC
** * * ** ** *
95420 AATTGCCCGCACTGAGGGTC-GAAATGTGTTGATGGTGATCGAGGC
1 AACCGCCCGCAC-CAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGC
* *
95465 AACAGCCCGCACCAGGGCCTAGCTTGTGCCGATGGCGGTCGAGG
1 AACCGCCCGCACCAGGGCC-AGCTTGTGCCGATGGTGGTCGAGG
95509 TAAGTGCCCA
Statistics
Matches: 666, Mismatches: 207, Indels: 50
0.72 0.22 0.05
Matches are distributed among these distances:
44 47 0.07
45 604 0.91
46 15 0.02
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
AACCGCCCGCACCAGGGCCAGCTTGTGCCGATGGTGGTCGAGGC
Found at i:96457 original size:45 final size:45
Alignment explanation
Indices: 96237--98546 Score: 1407
Period size: 45 Copynumber: 51.2 Consensus size: 45
96227 GATGGTATTT
* * * * *
96237 GAGGCAACCGACCGTACCAGGGGCCATCTTCTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** *** *
96282 GAGGCAAGAGCCCGCACCAAGGGTTGGCTTGTGCCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * * ** *
96327 AAGGAAACCACCTGCA-CAAAGGCCTAGCACGTGCTGATGGT-GTC
1 GAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTC
* * *** * * * *
96371 TGAGGCAACCACCC-AAATGAGGCCCAGCATATGCCGATGGTGTTC
1 -GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * *
96416 GACGCAACCGCCCACACCAGGGGCCATCTTGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * **
96461 GAGGTAACCGCCCGCACCAAGGGTCAGCTTGTGTTGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * ** * * * *
96506 GAGGCAACCGCCCACACCAGGGGCCATTTTCTACTGATGGCGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** * * * *
96551 GAGACAAGAGCCTGCACCAAGGGTCGGCTTGTGCCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * ** * * *
96596 GAGGCAACTGCCCACA-CAAAGGCCTAGCACGTGTCGATGGTGTTT
1 GAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTC
* * * *
96641 GAGGCAACCGCCCTCACCAAGGCCCAG-TATGTGTCGATGGTGATC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCT-TGTGCCGATGGTGGTC
* * * * * * *
96686 GAGGCAACGGCCCGCACTAA-GGCTCGGCATGTACCGATGGTGTTT
1 GAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTC
* * * * *
96731 GACGCAACCACCTGCACC-AGAGGCCATCTTGTGCCGATGCTGGTC
1 GAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTC
* * ** **
96776 GAGGAAACCGCCTGCACCAAGGG-TTGTCTTGTATCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * *
96821 GAGGCAACTGCCCGCACCAAGGGTCGGCTTGTGCAGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * ** * * *
96866 GAGGCAACCATCTCGCACCAGGGGCCATTTTCTGCAGATCGTGGTC
1 GAGGCAACC-GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** * *
96912 GAGGCAAGAGCCCGCACCAAGGGTC-GACTTGTGCCGATGGTCGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * * *
96957 GAGGCAACCACCCGCACCAAGGGCGATCTTCTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * **
97002 GAGGCAATCGCCCGCACCAA-GGCCTAGCATT-TGTCGATAATGGTC
1 GAGGCAACCGCCCGCACCAAGGGCC-AGC-TTGTGCCGATGGTGGTC
* ** * * * *
97047 GAGGAAAGAGCCCGCACCACGGGCCGGCTTGTACCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** *** *
97092 GAGGCAATCGCCCATACCAA-GGCCTAGCACATGCCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTC
* * * * *
97137 GAGGCAACCGCCCGCACCAAGGCCCGGCATGTGCCGATTGTGGTT
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * * * **
97182 GAGGCAACCGCCCTCACCAAGGCCCGGCATGAGTCGATGGTATTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * *
97227 GACGCAACCGCCCGCACC-AGAGGCCATCTTGTGCCGATGATGGTC
1 GAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTC
* * ** * ** * *
97272 GAGGTAACCGCTCGTGCCAA-GGCTTAGCACGTGTCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTC
* * * *
97317 GAGGCAACCGCCCTCACCAA-GGCCCGACATGTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * * * * * *
97362 GAGGTAACAGCCTGCACCAAGGCCCGGCATGTACCGATGGTGTTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
*** * * *
97407 GACATAACCGCCTGCACC-AGAGGCCATCTTGTGCCAATGGTGGTC
1 GAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTC
** * ** *
97452 GAGGCAACCGCTTGCACCAAAGATC-GTCTTGTGCCAATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * * **
97497 AAGGCAACCGCCTGCACCAAGGGTCGGCTTGTGTAGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * ** * *
97542 AAGGTAATCGCCCCGCACCAGGGGCCATTTTCTACCGATGGTGGTC
1 GAGGCAACCG-CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** * * *
97588 GAGGCAAGAGCCCGTACCAAGGGTC-GACTTGTGCCGATGGTCGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * * ** * *
97633 AAGGCAACCGCCTGCGCCAGGGGCCATATTCTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** *
97678 GAGGCAACCGCCCGCACCAA-GGCCTAGCATT-TATCGATGATGGTC
1 GAGGCAACCGCCCGCACCAAGGGCC-AGC-TTGTGCCGATGGTGGTC
* ** *
97723 GAGGAAAGAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGT-GCC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** * * ** *
97767 TGAGGCAACCATCTGTACCAA-GGCCTAGCACGTGCCGATGGTGTTC
1 -GAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTC
* * * * *
97813 GAGGCATCCGCCCGCACCAA-GGCCCGACATATACCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* ** ** * *
97858 GAGGTAACCGCCCATACCAAGGG-TTGTCTTGTGTCGATGGTGGTT
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * *** * *
97903 GAGGCAATCACCCGCACCAAGGGTTGGCTTTTGCAGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** * * *
97948 GAGGCAACCGCCCGCACCAGGGGCCATTTTCTGTCAATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** * * * *
97993 AAGGCAAGAGCTCGCACCAAGGGTCAGCTTGTGCCGAAGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * *** * *
98038 GAGGCAACCACCCACACTGGGGGCCATCTTCTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * *
98083 GAGGTAACCGCCCGTACCAAAGCCCAGCATGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * *
98128 GAGGGTCAAGGCAAGAGCCTGCACTAAAGGCCAGCTTGTGCCGATGGTGCTC
1 GA-GG-CAA--C---CGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * *
98180 GAGGTAACCACCCGCACCAAGGGCCATCTTCTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** * * * *
98225 GAGACAACCGCTTGAACCAAGGCCCAGCATGTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** * * *
98270 AAGGCAAGAGCCCACACCAAGGGCC-GCCTTGTGTCGATGGTGCTC
1 GAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTC
* * * * * *
98315 GAGGCAACCGCCCGCACCAA-GGCCTAGCATATGCTGATAGTGTTT
1 GAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTC
* * * * *
98360 GAGGCAACCGCCTC-TACCAAAGCCCAGCATGTGCCGATGGTGTTC
1 GAGGCAACCGCC-CGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* ** *
98405 GACGCAACCGCCTACACCAAGGGCCATCTTGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
** * *
98450 GAGGCAGTCGCCCGCACCAAGGGTCAGCTAGTGCCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
* * * * *
98495 GAGGCAACTGTCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTC
1 GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
98540 GAGGCAA
1 GAGGCAA
98547 GGTCGGTCGA
Statistics
Matches: 1695, Mismatches: 511, Indels: 118
0.73 0.22 0.05
Matches are distributed among these distances:
44 76 0.04
45 1468 0.87
46 111 0.07
47 2 0.00
48 1 0.00
49 1 0.00
50 2 0.00
51 2 0.00
52 32 0.02
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.18
Consensus pattern (45 bp):
GAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTC
Found at i:104916 original size:45 final size:44
Alignment explanation
Indices: 104867--105064 Score: 164
Period size: 45 Copynumber: 4.4 Consensus size: 44
104857 GGCCATCTTA
* **
104867 TGCCGATGGTGGTCGAGGCAACTGCTCGTACCAAGGCTCGGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCTCACACCAAGGC-CGGCATG
* * *
104912 TGCCGATGGTGGTCGAGGCAACCGCTTACACCATGGCTCGACATG
1 TGCCGATGGTGGTCGAGGCAACCGCTCACACCAAGGC-CGGCATG
* * * * * ** *
104957 TGCCGATGGTGTTCAATGCAACCG-TCCGCACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCT-CACACCA-AGGCCGGCATG
* * * * *
105002 TGTCGATGGTGGTCGAGGCAATCGCCCATACCAAGGGCCGGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCTCACACCAA-GGCCGGCATG
*
105047 TACCGATGGTGGTCGAGG
1 TGCCGATGGTGGTCGAGG
105065 AAATAGCAAG
Statistics
Matches: 121, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
44 1 0.01
45 117 0.97
46 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (44 bp):
TGCCGATGGTGGTCGAGGCAACCGCTCACACCAAGGCCGGCATG
Found at i:105061 original size:135 final size:135
Alignment explanation
Indices: 104819--105163 Score: 379
Period size: 135 Copynumber: 2.6 Consensus size: 135
104809 GCTATGCCTG
* *
104819 ATGTGCCGATGGTGTTCGACGTAACCGCCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAG
1 ATGTGCCGATGGTGTTCAACGCAACCGCCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAG
* * *
104884 GCAACTGCTCGTACCAAGGCTCGGCATGTGCCGATGGTGGTCGAGGCAACCGCTTACACCATGGC
66 GCAACTGCCCATACCAAGGCTCGGCATGTACCGATGGTGGTCGAGGCAACCGCTTACACCATGGC
104949 TCGAC
131 TCGAC
* * * *
104954 ATGTGCCGATGGTGTTCAATGCAACCGTCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAG
1 ATGTGCCGATGGTGTTCAACGCAACCGCCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAG
* *
105019 GCAA-TCGCCCATACCAAGGGC-CGGCTTGTACCGATGGTGGTCGAGG-AA----ATAGCA--A-
66 GCAACT-GCCCATACCAA-GGCTCGGCATGTACCGATGGTGGTCGAGGCAACCGCTTA-CACCAT
* * *
105074 GGGTTGGC
128 GGCTCGAC
* * * * * * *
105082 ATGTGCCAATGGTGATCAAGGCAACCGCCTGCACCAGGGCCCAGT-TTGTGCCGATGGCGGTCGA
1 ATGTGCCGATGGTGTTCAACGCAACCGCCCGCACCAGGGGCCA-TCTTATGCCGATGGTGGTCGA
*
105146 GGCAACTGCCCGTACCAA
65 GGCAACTGCCCATACCAA
105164 ATGGCAGCCT
Statistics
Matches: 182, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
128 74 0.41
129 3 0.02
130 2 0.01
131 2 0.01
134 3 0.02
135 95 0.52
136 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (135 bp):
ATGTGCCGATGGTGTTCAACGCAACCGCCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAG
GCAACTGCCCATACCAAGGCTCGGCATGTACCGATGGTGGTCGAGGCAACCGCTTACACCATGGC
TCGAC
Found at i:105181 original size:128 final size:128
Alignment explanation
Indices: 104953--105187 Score: 298
Period size: 128 Copynumber: 1.8 Consensus size: 128
104943 CATGGCTCGA
* * * * * *
104953 CATGTGCCGATGGTGTTCAATGCAACCGTCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGA
1 CATGTGCCAATGGTGATCAAGGCAACCGTCCGCACCAGGGCCCATCTTGTGCCGATGGCGGTCGA
* * *
105018 GGCAATCGCCCATACCAAGGGCCGGCTTGTACCGATGGTGGTCGAGGAAATAGCAAGGGTTGG
66 GGCAATCGCCCATACCAAGGGCCAGCCTGTACCGATGATGGTCGAGGAAATAGCAAGGGTTGG
105081 CATGTGCCAATGGTGATCAAGGCAACCG-CCTGCACCAGGGCCCAGT-TTGTGCCGATGGCGGTC
1 CATGTGCCAATGGTGATCAAGGCAACCGTCC-GCACCAGGGCCCA-TCTTGTGCCGATGGCGGTC
* * *
105144 GAGGCAA-CTGCCCGTACCAAATGG-CAGCCTGTGCCGATGATGGT
64 GAGGCAATC-GCCCATACC-AAGGGCCAGCCTGTACCGATGATGGT
105188 TGATGCATAT
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
127 3 0.03
128 83 0.91
129 5 0.05
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.20
Consensus pattern (128 bp):
CATGTGCCAATGGTGATCAAGGCAACCGTCCGCACCAGGGCCCATCTTGTGCCGATGGCGGTCGA
GGCAATCGCCCATACCAAGGGCCAGCCTGTACCGATGATGGTCGAGGAAATAGCAAGGGTTGG
Found at i:105450 original size:14 final size:14
Alignment explanation
Indices: 105431--105457 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105421 TGGTACTTGG
105431 CCCTTATATTGGCT
1 CCCTTATATTGGCT
105445 CCCTTATATTGGC
1 CCCTTATATTGGC
105458 CCTTATAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.41
Consensus pattern (14 bp):
CCCTTATATTGGCT
Found at i:105460 original size:12 final size:12
Alignment explanation
Indices: 105427--105464 Score: 58
Period size: 12 Copynumber: 3.0 Consensus size: 12
105417 GTGTTGGTAC
105427 TTGGCCCTTATA
1 TTGGCCCTTATA
105439 TTGGCTCCCTTATA
1 TTGG--CCCTTATA
105453 TTGGCCCTTATA
1 TTGGCCCTTATA
105465 GGTTTGCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:112794 original size:23 final size:23
Alignment explanation
Indices: 112758--112801 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
112748 TCGATGGTGG
*
112758 TCGAGGCAACTGCCCACACCAGA
1 TCGAGGCAACTGCCAACACCAGA
**
112781 TCGAGGCATGTGCCAACACCA
1 TCGAGGCAACTGCCAACACCA
112802 AGGCCCGACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.36, G:0.23, T:0.11
Consensus pattern (23 bp):
TCGAGGCAACTGCCAACACCAGA
Found at i:112803 original size:68 final size:68
Alignment explanation
Indices: 112717--112847 Score: 190
Period size: 68 Copynumber: 1.9 Consensus size: 68
112707 TGGTGGTTGG
** * * * *
112717 GGCATGTGCCCGCACCAAGGGCCAACGTGTGTCGATGGTGGTCGAGGCAACTGCCCACACCAGAT
1 GGCATGTGCCAACACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGAT
112782 CGA
66 CGA
* *
112785 GGCATGTGCCAACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAG
1 GGCATGTGCCAACACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAG
112848 GGGCCATCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.23, C:0.33, G:0.31, T:0.14
Consensus pattern (68 bp):
GGCATGTGCCAACACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGAT
CGA
Found at i:112845 original size:45 final size:45
Alignment explanation
Indices: 112797--113187 Score: 381
Period size: 45 Copynumber: 8.7 Consensus size: 45
112787 CATGTGCCAA
* *
112797 CACCAA-GGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCA
1 CACCAAGGGCCAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * ** *
112842 CACCAGGGGCCATCTTCTGTCGATGGTGATCGAGGCAAGAGCCAG
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
** * *
112887 CACCAAGGGCTGGCTTGTGCCGATGGTGCTCGAGGCAACCGCCCG
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * * * *
112932 CACCAGGGGCCATCTTCTACCAATGGTGGTCGAGGTAACCGCCTG
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* *
112977 CACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCCCG
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* ** * *
113022 CACCAAGGCCCAGCGCGTGCCGATGGTATTCGAGGCAACCGCCCA
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * *
113067 TACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGTAACCACCCG
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * *
113112 CACCAAGGCCCATCACGT-CTCGATGGTTTTCGAGGCAACCGTCTG
1 CACCAAGGGCCAGCATGTGC-CGATGGTGTTCGAGGCAACCGCCCG
*
113157 CACCATGGGCCAGCATGTGCCGATGGTGTTC
1 CACCAAGGGCCAGCATGTGCCGATGGTGTTC
113188 AAAGCTGTCT
Statistics
Matches: 276, Mismatches: 67, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
44 1 0.00
45 270 0.98
46 5 0.02
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (45 bp):
CACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
Found at i:116510 original size:26 final size:26
Alignment explanation
Indices: 116480--116558 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
116470 GTTGACTTAG
116480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
116506 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
116532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
116558 G
1 G
116559 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:123387 original size:23 final size:23
Alignment explanation
Indices: 123361--123414 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
123351 ACCAGATTGA
123361 GGCATGTGCCAACACCAAGGCCC
1 GGCATGTGCCAACACCAAGGCCC
123384 GGCATGTGCCAACACCAAGGCCC
1 GGCATGTGCCAACACCAAGGCCC
123407 GGCATGTG
1 GGCATGTG
123415 TCGATGGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.24, C:0.35, G:0.30, T:0.11
Consensus pattern (23 bp):
GGCATGTGCCAACACCAAGGCCC
Found at i:123468 original size:45 final size:45
Alignment explanation
Indices: 123396--124503 Score: 853
Period size: 45 Copynumber: 24.7 Consensus size: 45
123386 CATGTGCCAA
* * * * * *
123396 CACCAAGGCCCGGCATGTGTCGATGGTGTTCGATGCAACCGCCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * *
123441 CACCAGGGGCTAACTTGTGCTGATGGTGGTCGAGGCAACCACCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* *
123486 CACCAAGGGTC-GACTTGTGCCAATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * **
123531 CACC-AGGGCCA--TTTTCCACTGATGGTGGTCAAGGCAAGAGCCCG
1 CACCAAGGGCCAGCTTGTGC-C-GATGGTGGTCGAGGCAACCGCCCG
* *
123575 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCCCA
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * **
123620 CACC-AGGAGCCATCTTCTATCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGG-GCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * *
123665 TACCAAGGCCCAGCGTGTGCCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* *
123710 CACCAAGGCCCAGCGTGTGCCGATGGTGGTCGAGGCAACCG-CC-
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
*
123753 CACCAA-GGCCAGCGTGTGCCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* *
123797 CACCAA-GGCCAGCGTGTGCCGATGGTGGTCGAGGCAAGCGCCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * *
123841 CACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCTCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * * **
123886 CACCAAGGGCTAGCTAGTGTCAATGGTGCTTGAGGCAACCGCTTG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
** * *
123931 CACCAA-GGCTTGGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
1 CACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * ** *
123976 CCCCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAACCATCTG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * * *
124021 CACCAA-GGCCCGACATGTGTCGATGGTGTTTGATGCAACCGCCCA
1 CACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * ** * *
124066 CACCAGGGGCCATCTTGTGTTGATGGTGGTCAAGGCAACCACCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * *
124111 CACCAAGGGTC-GGTTGGTGCCGATGATGTTCGAGGCAACCACACG
1 CACCAAGGGCCAGCTT-GTGCCGATGGTGGTCGAGGCAACCGCCCG
* * ** * *
124156 TACCAA-GGCTCAGCATGTATCGATGGTGGTTGAGGCAACCACCCG
1 CACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * ** * * * * * * *
124201 TACCAGGGGCCTTCTTATGCCGATGGTGTTTGACGTAACCACCCA
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* ** *
124246 CACCAAGGGCCAGCTAGTGCCGATGGTGGTTAAGGCAACCCCCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * * * * * *
124291 TACCACGGCCCAACATGTACCGATGGTGTTCGATGCATCCGCCTG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * ** * *
124336 CACCAGGGGCCATCTTTTATCGATGGTGGTCGAGGCAATCACCCG
1 CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * * * * *
124381 CACCAAGGGCC-GACATATGCCAATGGTGATCGAGGCAATCGCCCA
1 CACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* ** * * **
124426 CACC-AGGGCCCAACTTGTTTCGATGGCGGTCGAGGTAATTGCCCG
1 CACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
* * *
124471 TACCAAAGGG-CAGCCTGTGCCGATGATGGTCGA
1 CACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGA
124504 TGCATGTGCC
Statistics
Matches: 833, Mismatches: 205, Indels: 50
0.77 0.19 0.05
Matches are distributed among these distances:
42 37 0.04
43 9 0.01
44 97 0.12
45 666 0.80
46 16 0.02
47 8 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
CACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
Found at i:129852 original size:45 final size:45
Alignment explanation
Indices: 129754--130849 Score: 654
Period size: 45 Copynumber: 24.4 Consensus size: 45
129744 AGGCCTGATA
* * * * * * *
129754 TGTGCCGATGGTGTTCGACGTAACTGCCTGTACCATA-GGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCA-AGGGCCAGCT
* * * * * * *
129799 TCTACCGATGGTGGTCGAGGTAAGAGCCCGTACTAAGGGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * *
129844 TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* *** * * * * * *
129889 TCTATTGATGGTGGTTGAGGCAACCGCCCGTACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * * *
129934 CGTGCCGATGGTGTTTGAGACAACCA-CCC-CACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCT
* * * * *
129978 TTTGCCGATGGTGGTCGAGGCAAGAGCCTGCACC-AGGGGCTGACT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAG-CT
* * *
130023 TGTGCCGATGGTGCTCGAGGCAACAGCCCGCA-CAAAGGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AGCT
* * * * * *
130068 CGTGCCGATGGTGTTCGAGGCAACCGCCTGCACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
** * * *
130113 TGTGCTAATGGTGGTCGAGGCAACCA-CCCTCACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCT
* * * * ** * * *
130158 TGTGCCGATGGTGTTCAATGCAACCGTTCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * *
130203 TGTGCAGATGGTGGTCGAGGTAACTGCCTGCACCAAGGGTCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
** **
130248 TGTGCCGATGGTGGTCGAGGCAATC-GGTCGCACC-AGGGACCATTT
1 TGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGG-CCAGCT
* * * * *
130293 TCTGCCGATGGTGGTGGAGGCAAGAGCCCGCACTAAGGGTCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * *
130338 TGTGCCGATGGTGCTCGAGGCAACTGCCCGCACCAA-GGCCGAGCA
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AGCT
* * * * * * * *
130383 CGTGCCAATGGTGTTCGAGGTAACCA-CCCCCACTAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCT
* * * *
130428 TGTGCCGATGGTGGTCGAGGTAACTA-CCCACACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAAC-AGCCCGCACCAAGGGCCAGCT
* * ** * ***
130473 TGTGTCGATGGTGTTCGACACAATC-GCCCGCACCATGGGTTGGCT
1 TGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCT
* * **
130518 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACTAAGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * * * * *
130563 TCT-ACGATGATGGTCGAGGCAAGAGCCTGCACTAAGGGTCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * *
130607 TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * ** * * *
130652 TCTACCGATGGTGGTCGAGGTAACCGCCCATACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* ** * * *
130697 TGTACCGATGGTAATCGAGGTAAGAGCCCGCACCAAGGGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * * * * * *
130742 TGTGTCGATGGTGCTCGAGGAAACCGCCCACACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
* * * ** * * *
130787 TTTGTCGATGGTGGTTGAGGCAAGTGCCTGTACCAAAGGG-CAGCC
1 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACC-AAGGGCCAGCT
* *
130832 TGTGCTGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
130850 TGCATGTGCC
Statistics
Matches: 791, Mismatches: 237, Indels: 46
0.74 0.22 0.04
Matches are distributed among these distances:
43 1 0.00
44 80 0.10
45 687 0.87
46 23 0.03
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCT
Found at i:130870 original size:13 final size:13
Alignment explanation
Indices: 130852--130876 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
130842 ATGGTCGATG
130852 CATGTGCCATCAC
1 CATGTGCCATCAC
130865 CATGTGCCATCA
1 CATGTGCCATCA
130877 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:131780 original size:26 final size:26
Alignment explanation
Indices: 131751--131803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
131741 GTTGACTTAG
131751 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
131777 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
131803 G
1 G
131804 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Done.