Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 2 of 64
Found at i:132137 original size:26 final size:26
Alignment explanation
Indices: 132107--132159 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
132097 GTTGACTTAG
*
132107 GCATATAGAGTTCATTACC-AGTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
*
132133 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
132159 G
1 G
132160 ATTGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:140964 original size:45 final size:45
Alignment explanation
Indices: 140173--141005 Score: 491
Period size: 45 Copynumber: 18.5 Consensus size: 45
140163 AGGCTTGGTA
* ** * * * *
140173 TGTGCCGATGGTGTTCGAGGCAACTACCTGCACCAAGGCCCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * ** * *
140218 TGTGCCGATGGTGTTCGACGTAACCGCCCATACC-AGACGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCT
* * * ** * * **
140263 TTTGTCGATGGTGGTCGAGGTAAAAGCCCACACCAAGGGTCAATT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
140308 TGTACCGATGGTGCTCGAGGTAACCGTCCGCACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
140353 TCTGCTGATGGTGGTCGAGGCAACCGCCTGCACCAGGGGCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * *
140398 TGTGCCGATGGTGTTCAAGGTAACCACCCGCACCAAGGGCC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * ** ** * * *
140443 TGTGCCGATGGTGCTCGAGGTAACTACTAGCACGAA-AGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
** * * * * * *
140488 CATACCGATGGTGTTCGAGGTAATCGCCCGCACCAA-AGCTCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAGCT
* *
140533 TGTGTCGATGGTGGTCGAGGCAACCGCTCGCACCAA-GGCCTAGCACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AG--CT
* * * * *
140580 TGT--CGGTGATGTTCGATGCAACCGCCCGCACC-AGAGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCT
* *
140623 TGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
** * * **
140668 TGTGCCGATGGTGACCGAGGCAACCACCCGCACCAGGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * ** *
140713 TCTGTCGATGGTGGTCAAGGCAAGAGCCCGCACCAAGGGTCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * *
140758 TGTGTCGATGGTGCTCGAGGCAACTGCCCGCACCAA-GGCCTAG-T
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * * * * * * *
140802 ACGTGTCGATGGTGTTCGAGGCAACCGCCCGTAACAATGCCCGGCA
1 -TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
140848 TGTGCTGATGGTGGTCGAGGCAACCGTCGGCACCAAGGCCCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * *
140893 TGTGCC-AGTTGTGTTCGACGTAACTGCCCGTACCAGGGGCCATCT
1 TGTGCCGA-TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* *** * **
140938 TGTGCCGATGGTGGTCGAGGCAACTGCCTATACCAGGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* *
140983 TCTGCTGATGGTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
141006 GAGCCTGTGT
Statistics
Matches: 606, Mismatches: 162, Indels: 40
0.75 0.20 0.05
Matches are distributed among these distances:
43 5 0.01
44 13 0.02
45 570 0.94
46 14 0.02
47 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
Found at i:146977 original size:45 final size:45
Alignment explanation
Indices: 146918--148313 Score: 804
Period size: 45 Copynumber: 30.8 Consensus size: 45
146908 AGGTGTGACA
*
146918 CCCGCACCAAGGGCCGGCTTGTGCCGATGGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * ** * * *
146963 CCCACACCAGGGGCCATTTTCTGTCGATGGTGGTCGAGGTAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * **
147008 CCCGTACCAA-GGCTCAGCATGTGCTGATGGTGGTCGAGGCAAGAG
1 CCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * *
147053 CCTGTACCAAGGGACGGCTTGTGCCGATGGTGCTCGAGGCAATCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
** * * *
147098 CCTACACCAAGGGCCATCTTTTGCAGATGGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * *
147143 CCCACACCAAGGCCCAGCATGTGCCGACGGTGTTCGAGGTAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* ** *
147188 CCCGCACCAA-GGCCTAGCATGTGCCGATGGTGGTTAAGGCAACCA
1 CCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * ** * * *
147233 CCCACACCAAGGCCCAGCACGTGCCGATGGTGTTCGATGCAACTG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * * *
147278 CCCACACCAGGGGCCATCTTGTGTCGATGGTGGTCGATGTAACTG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * *
147323 CCCGCACCAAGGGCCGGCTAGTGTCGATGGTGGTCGAGGCAACCA
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * ** ** * *
147368 CCCACACCAAGGCCCGGCACGTATCGATGGTGTTTGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * **
147413 CCCGCACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
** * * * * * * **
147458 CCTACACCAAGGCCCAGCATGTGTCGATGGTGTTTGATGCAACTA
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * *
147503 CCCGCACCAGGGGCCATCTTATGTCGATGGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * ** * *
147548 CCAGCACCAAGGGTCGACAAGGCCCAGCATGTGTTGATGGTGTTCGATGCAACCG
1 CCCGCACCAA-----G----GG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * *
147603 TCCGCACCAGGGGCCATCTTGTGCCGAAGGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* *
147648 CCCGCACCAAGGGTC-GACTTGTGCCGATAGTGGTCGAGGCAACCG
1 CCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * * **
147693 CCCGCACTAGGGGCCATCTTCTGCGGATGATGGTCGAGGCAAGAG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
** * * * **
147738 CATGCACCAAGGGCCGGCTTGTGCCGAT-GTGCTTGAGGCAATTG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * *
147782 CTCGCACCAGGGGCCATCTTTTGCCGATGGTGGTCGAGGTAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * ** * *
147827 CCCACACCAGGGGTC-GACTGGTGTTGATGGTGCTCGAGGCAACTG
1 CCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCG
** * ** *
147872 CCCGCACCAA-GG-CATGGCACGTGCCGATGGTGTTCTTGGCAACTG
1 CCCGCACCAAGGGCCA--GCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * * *
147917 CTCGCACC-AGGGAACATCATCTGTCGATGGTGGTCGAGGCAATCG
1 CCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
*** * *
147962 TTGGCACC-AGAGGCCATCTTGTGCCGATGGTGGTCGGGGCAACCG
1 CCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * ** * * * *
148007 CCCGTACCAAGGGTCGGCTGGTGTCGATAATGCTAGAGGTAACGG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * *
148052 CCTGCACCAAGGGTCGGCTGGTGCTGATGGTGTTCGAGGCAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * * * *
148097 CTCGCACCAA-GGCTCGGCATGTGCTGATAGTGGTTGAGACAACCG
1 CCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * * ** * * * *
148142 CCCGTACCACGGCCCAGCATGTGCTAATGGAGTTCGATGAAACCG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
* * * *
148187 CCAGCACCAAGGGTCATCTTGGTTG--GAAT-GTGGTCGAGGCAATCG
1 CCCGCACCAAGGGCCAGCTT-G-TGCCG-ATGGTGGTCGAGGCAACCG
* * * * * **
148232 CCCGCACCAAGGCCCAGTTTGTGCCGATGGCGATCGAGGTAAGTG
1 CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
** * *
148277 CCCGTTCCAAAGGG-CAGCCTGTGCCGATGATGGTCGA
1 CCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGA
148314 TGCATGTGCC
Statistics
Matches: 1018, Mismatches: 298, Indels: 70
0.73 0.22 0.05
Matches are distributed among these distances:
43 3 0.00
44 47 0.05
45 906 0.89
46 21 0.02
47 4 0.00
50 2 0.00
54 2 0.00
55 33 0.03
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
CCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCG
Found at i:147638 original size:100 final size:100
Alignment explanation
Indices: 147465--147665 Score: 321
Period size: 100 Copynumber: 2.0 Consensus size: 100
147455 CCGCCTACAC
* * *
147465 CAAGGCCCAGCATGTGTCGATGGTGTTTGATGCAACTACCCGCACCAGGGGCCATCTTATGTCGA
1 CAAGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCTTATGCCGA
*
147530 TGGTGGTCGAGGCAACCGCCAGCACCAAGGGTCGA
66 AGGTGGTCGAGGCAACCGCCAGCACCAAGGGTCGA
* ** *
147565 CAAGGCCCAGCATGTGTTGATGGTGTTCGATGCAACCGTCCGCACCAGGGGCCATCTTGTGCCGA
1 CAAGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCTTATGCCGA
*
147630 AGGTGGTCGAGGCAACCGCCCGCACCAAGGGTCGA
66 AGGTGGTCGAGGCAACCGCCAGCACCAAGGGTCGA
147665 C
1 C
147666 TTGTGCCGAT
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (100 bp):
CAAGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCTTATGCCGA
AGGTGGTCGAGGCAACCGCCAGCACCAAGGGTCGA
Found at i:147747 original size:190 final size:190
Alignment explanation
Indices: 147375--147750 Score: 452
Period size: 190 Copynumber: 2.0 Consensus size: 190
147365 CCACCCACAC
* * *
147375 CAAGGCCCGGCACGTATCGATGGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATCTTCTATCGA
1 CAAGGCCCAGCACGTATCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGA
* * * * * * * *
147440 TGGTGGTCGAGGCAACCGCCTACACCAAGGCCCAGCATGTGTCGATGGTGTTTGATGCAACTACC
66 AGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGCCGATAGTGGTCGAGGCAACCACC
* *
147505 CGCACCAGGGGCCATCTTATGTCGATGGTGGTCGAGGCAACCGCCAGCACCAAGGGTCGA
131 CGCACCAGGGGCCATCTTATGTCGATGATGGTCGAGGCAACAGCCAGCACCAAGGGTCGA
* * * * * * *
147565 CAAGGCCCAGCATGTGTTGATGGTGTTCGATGCAACCGTCCGCACCAGGGGCCATCTTGTGCCGA
1 CAAGGCCCAGCACGTATCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGA
* ** * *
147630 AGGTGGTCGAGGCAACCGCCCGCACCAAGGGTC-GACTTGTGCCGATAGTGGTCGAGGCAACCGC
66 AGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAG-CATGTGCCGATAGTGGTCGAGGCAACCAC
* * *
147694 CCGCACTAGGGGCCATCTTCTG-CGGATGATGGTCGAGGCAAGAG-CATGCACCAAGGG
130 CCGCACCAGGGGCCATCTTATGTC-GATGATGGTCGAGGCAACAGCCA-GCACCAAGGG
147751 CCGGCTTGTG
Statistics
Matches: 155, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
189 4 0.03
190 151 0.97
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (190 bp):
CAAGGCCCAGCACGTATCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGA
AGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGCCGATAGTGGTCGAGGCAACCACC
CGCACCAGGGGCCATCTTATGTCGATGATGGTCGAGGCAACAGCCAGCACCAAGGGTCGA
Found at i:149243 original size:26 final size:26
Alignment explanation
Indices: 149205--149258 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
149195 GGTTGACTTT
**
149205 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAAAGTTCATTCCCAGTCTA
149231 AGCATACAAAGTTCATTCCCAGTCTA
1 AGCATACAAAGTTCATTCCCAGTCTA
149257 AG
1 AG
149259 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
AGCATACAAAGTTCATTCCCAGTCTA
Found at i:149410 original size:196 final size:197
Alignment explanation
Indices: 149050--149429 Score: 480
Period size: 196 Copynumber: 1.9 Consensus size: 197
149040 CGTAGTGCAC
** * ** * *
149050 TCCCAGTCTAAGATTGGATCAGACCAAGGGTTACAGCAGTAGGACCCGCAGTAGGATCGATAGCA
1 TCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGTAGGACCAACAGTAGGATCGACAACA
* * * * * * *
149115 TGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCA
66 CGCAGAGAGGGACCAGGCCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGCCGGCTGAGCGCCCA
*
149180 CACACTCATTTCGTGGGTTGACTTTAGCATACGGAGTTCATTCCCA-GTCTAAGCATACAAAGTT
131 CACACTCATTTCATGGGTTGACTTTAGCATACGGAGTTCATT-CCATGTCTAAGCATACAAAGTT
149244 CAT
195 CAT
* *
149247 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGTAGGACCAACAGTAGGATCGACAAC
1 TCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAG-CAGTAGGACCAACAGTAGGATCGACAAC
** * *
149311 ACGCAG-GAGGGACCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGTTGAGTGCCC
65 ACGCAGAGAGGGACCAGGCCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGCCGGCTGAGCGCCC
* * * *
149375 GCACACTCGTTTCATGGGTTGGC-TTAGGTATACGGAGTTCATTCCATGTCTAAGC
130 ACACACTCATTTCATGGGTTGACTTTA-GCATACGGAGTTCATTCCATGTCTAAGC
149430 CCCAGCCGGA
Statistics
Matches: 155, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
195 6 0.04
196 91 0.59
197 58 0.37
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (197 bp):
TCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGTAGGACCAACAGTAGGATCGACAACA
CGCAGAGAGGGACCAGGCCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGCCGGCTGAGCGCCCA
CACACTCATTTCATGGGTTGACTTTAGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTC
AT
Found at i:153778 original size:135 final size:135
Alignment explanation
Indices: 153574--154441 Score: 630
Period size: 135 Copynumber: 6.4 Consensus size: 135
153564 TGGGGCATAT
* * * * * * ** * *
153574 GCCCGCACCAAGGGCCAGTGTGTGCCAATGGTGGTCGAGGCATGTGCCCATACCAAGGCCCGGCA
1 GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGGCT
* * * *
153639 TGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGTCGATGGTGTTCAACG
66 TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACG
* **
153704 TAATT
131 CAACC
* * * **
153709 GCCCGCACCAGGGGCCATTTTCTACCAATGGTGGTCGAGGCAAGAGCCCGCACCAAGGATCGGCT
1 GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGGCT
* * * * * * * *
153774 TGTGCTGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCCATCTTCTGCCGATGGTGATCGAGG
66 TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACG
**
153839 CAAGA
131 CAACC
* * * * * * ** **
153844 GCCCGCAACAAGGATCGA-TTTGTATCGATGGTGCTCGAGGAAATCGCCCGCACCAAGGGCCATC
1 GCCCGCACCAAGG-GCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGGC
* * * * * * * *
153908 TTCTACCGATGGTGGTC-ATGGTAACTGCCTGTACCAAGGCCCAGCACGTGCCGATGGTGTTCGA
65 TTGTGCCGATGGTGCTCGA-GGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGA
*
153972 TGCAACC
129 CGCAACC
* * * * *
153979 GCCCGCACCAAGAGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCCGACT
1 GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGGCT
* * * *
154044 TGTGTCGATAGTGCTCGAGGCAACCGCCCGCACCAAGGCCTAGCACGTGCCGATGGTGTTCGA-G
66 TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACG
154108 ACAACC
131 -CAACC
* **** ** * *
154114 GCTCGCACCAA-GGCCTAGCAGGTACCGATGGTGGTCGAGGCAACTGCCCACACCAA-GGCCTAG
1 GCCCGCACCAAGGGCC-ATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCC-GG
* * * * *
154177 CATGTGTCGATGGTGTTCGAGGTAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGA
64 CTTGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGA
*
154242 CGTAACC
129 CGCAACC
* * *** * ** * *
154249 GCCCGTACCAAGGGCCATCTTGTGTTGATGGTGGTTGAGGCAATTGCCCACCCCAAGGGTCAGCA
1 GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGG-C--C-
* * * ** * * * * * *
154314 ATGCCCAGCATATGCCGATGGTGTTCGACACAACTGCCCGCATCAGGGGCCATCTTGTGCCGATG
62 --G----GCTTGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
* *
154379 GTGGTCGAGGCAACC
121 GTGTTCGACGCAACC
* * * * * *
154394 GCCTGCACCAGGGGCCATCTTCTGCTGATGGTGGTCGAGGCAAGAGCC
1 GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCC
154442 TGTGTCATGC
Statistics
Matches: 579, Mismatches: 135, Indels: 28
0.78 0.18 0.04
Matches are distributed among these distances:
134 11 0.02
135 457 0.79
136 10 0.02
137 1 0.00
139 1 0.00
141 1 0.00
145 98 0.17
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (135 bp):
GCCCGCACCAAGGGCCATTTTGTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGGCT
TGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACG
CAACC
Found at i:154237 original size:45 final size:45
Alignment explanation
Indices: 153574--154436 Score: 469
Period size: 45 Copynumber: 19.0 Consensus size: 45
153564 TGGGGCATAT
* ** * * ***
153574 GCCCGCACCAAGGGCCAGTGTGTGCCAATGGTGGTCGAGGCATGT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** *
153619 GCCCATACCAAGGCCCGGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * **
153664 GCCAGCACCAAGGCCCAGCATGTGTCGATGGTGTTCAACGTAATT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *** * * * * **
153709 GCCCGCACCAGGGGCCATTTTCTACCAATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * * *
153754 GCCCGCACCAAGGATCGGCTTGTGCTGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * **
153799 GCCTGCACCAAGGGCCATCTTCTGCCGATGGTGATCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** ** * * *
153844 GCCCGCAACAAGGATC-G-ATTTGTATCGATGGTGCTCGAGGAAATC
1 GCCCGCACCAAGGCCCAGCA--TGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
153889 GCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTC-ATGGTAACT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGA-GGCAACC
* * * *
153934 GCCTGTACCAAGGCCCAGCACGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * **
153979 GCCCGCACCAAGAG-CCATCTTCTACCGATGGTGGTCGAGGTAAGA
1 GCCCGCACCAAG-GCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
154024 GCCCGCACCAAGGGCC-GACTTGTGTCGATAGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
* * *
154069 GCCCGCACCAAGGCCTAGCACGTGCCGATGGTGTTCGAGACAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
154114 GCTCGCACCAAGGCCTAGCAGGTACCGATGGTGGTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * *
154159 GCCCACACCAAGGCCTAGCATGTGTCGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
154204 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGACGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * **
154249 GCCCGTACCAAGGGCCATCTTGTGTTGATGGTGGTT-GAGGCAATTGCCC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAA----CC
* * * * ** *
154298 ACCCCAAGGGTCAGCAATGCCCAGCATATGCCGATGGTGTTCGACACAACT
1 -GCCC----G-CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
154349 GCCCGCATCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
154394 GCCTGCACCAGGGGCCATCTTCTGCTGATGGTGGTCGAGGCAA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAA
154437 GAGCCTGTGT
Statistics
Matches: 615, Mismatches: 181, Indels: 44
0.73 0.22 0.05
Matches are distributed among these distances:
44 2 0.00
45 570 0.93
46 7 0.01
49 2 0.00
50 6 0.01
51 1 0.00
54 4 0.01
55 23 0.04
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
Found at i:154273 original size:90 final size:90
Alignment explanation
Indices: 153551--154436 Score: 546
Period size: 90 Copynumber: 9.7 Consensus size: 90
153541 GGTGAGCAGG
* * * * ** * *
153551 TGCCGATGGTGGTTGGGGCATA-TGCCCGCACCAAGGGCCAGTGTGTGCCAATGGTGGTCGAGGC
1 TGCCGATGGTGGTCGAGGCA-ACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGC
*** ** * ** * *
153615 ATGTGCCCATACCAAGGCCCGGCATG
65 AACCGCCCGCACCAAGGGCCATCTTC
* * * * * * * *
153641 TGCCGATGGTGTTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGTCGATGGTGTTCAACGTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
** * *
153706 ATTGCCCGCACCAGGGGCCATTTTC
66 ACCGCCCGCACCAAGGGCCATCTTC
* * * ** * * *
153731 TACCAATGGTGGTCGAGGCAAGAGCCCGCACCAAGGATCGGCTTGTGCTGATGGTGCTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
*
153796 ACCGCCTGCACCAAGGGCCATCTTC
66 ACCGCCCGCACCAAGGGCCATCTTC
* * * ** **
153821 TGCCGATGGTGATCGAGGCAAGAGCCCGCAACAAGGATC-G-ATTTGTATCGATGGTGCTCGAGG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCA--TGTGCCGATGGTGCTCGAGG
* *
153884 AAATCGCCCGCACCAAGGGCCATCTTC
64 CAACCGCCCGCACCAAGGGCCATCTTC
* * * * * * * *
153911 TACCGATGGTGGTC-ATGGTAACTGCCTGTACCAAGGCCCAGCACGTGCCGATGGTGTTCGATGC
1 TGCCGATGGTGGTCGA-GGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGC
*
153975 AACCGCCCGCACCAAGAGCCATCTTC
65 AACCGCCCGCACCAAGGGCCATCTTC
* * * * * * *
154001 TACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCC-GACTTGTGTCGATAGTGCTCGAGGC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGCTCGAGGC
* *
154065 AACCGCCCGCACCAA-GGCCTAGC-AC
65 AACCGCCCGCACCAAGGGCC-ATCTTC
* * * * * * * *
154090 GTGCCGATGGTGTTCGAGACAACCGCTCGCACCAAGGCCTAGCAGGTACCGATGGTGGTCGAGGC
1 -TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGC
* * * * *
154155 AACTGCCCACACCAA-GGCCTAGCATG
65 AACCGCCCGCACCAAGGGCC-ATCTTC
* * * * * * * *
154181 TGTCGATGGTGTTCGAGGTAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTTGACGTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
* *
154246 ACCGCCCGTACCAAGGGCCATCTTG
66 ACCGCCCGCACCAAGGGCCATCTTC
** * * * * *
154271 TGTTGATGGTGGTTGAGGCAATTGCCCACCCCAAGGGTCAGCAATGCCCAGCATATGCCGATGGT
1 TGCCGATGGTGGTCGAGGCAA-----CAGCCC----G-CACCAAGGCCCAGCATGTGCCGATGGT
* ** * * * *
154336 GTTCGACACAACTGCCCGCATCAGGGGCCATCTTG
56 GCTCGAGGCAACCGCCCGCACCAAGGGCCATCTTC
* * * * * * * * *
154371 TGCCGATGGTGGTCGAGGCAACCGCCTGCACCAGGGGCCATCTTCTGCTGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
154436 A
66 A
154437 GAGCCTGTGT
Statistics
Matches: 616, Mismatches: 157, Indels: 46
0.75 0.19 0.06
Matches are distributed among these distances:
89 8 0.01
90 521 0.85
91 8 0.01
92 1 0.00
95 7 0.01
99 1 0.00
100 70 0.11
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
ACCGCCCGCACCAAGGGCCATCTTC
Found at i:155484 original size:21 final size:21
Alignment explanation
Indices: 155431--155473 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
155421 ACTTTGCGAG
155431 ATGGCATGGAGGCCATGCGCC
1 ATGGCATGGAGGCCATGCGCC
155452 ATGGCATGGAGGCCATGCGCC
1 ATGGCATGGAGGCCATGCGCC
155473 A
1 A
155474 GCGGATGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.28, G:0.37, T:0.14
Consensus pattern (21 bp):
ATGGCATGGAGGCCATGCGCC
Found at i:160644 original size:45 final size:45
Alignment explanation
Indices: 160390--160717 Score: 207
Period size: 45 Copynumber: 7.3 Consensus size: 45
160380 GCCCGTGACA
* ** * * *
160390 CCCGCACCAAGGGCCGGCTTGTGCCAATGGTGCTCGAGGCAATCCG
1 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAA-CCG
* * * *
160436 CCTGCACCAGGGGCCATTTTCTGCCGATGGTGGTCAAGGCAACTG
1 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCG
* * * * ** * *
160481 CCCGCACCA-AGGCTCAGCATGTATCGATGGTGATCGAGGCAACCA
1 CCCGCACCAGGGGC-CATCTTCTGCCGATGGTGGTCGAGGCAACCG
* * * ** * * *
160526 TCCTCACCAGGGGTCGA-CTAGTGCCAATGGTGCTCGAGGTAACCG
1 CCCGCACCAGGGG-CCATCTTCTGCCGATGGTGGTCGAGGCAACCG
* * * ** * * *
160571 CCCACACAAAGACCCAGC-ACGTGCCGATGGTGTTCGAGGCAACCG
1 CCCGCACCAGGGGCCATCTTC-TGCCGATGGTGGTCGAGGCAACCG
* *
160616 TCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAA-CG
1 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCG
** * * *
160660 CCCGCACCAGATGCCATCTTGTGTC-ATGGTGGTAGAGGCAACCG
1 CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCG
*
160704 CCCGCACCAAGGGC
1 CCCGCACCAGGGGC
160718 TGGCTGGTGC
Statistics
Matches: 212, Mismatches: 63, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
43 15 0.07
44 42 0.20
45 117 0.55
46 37 0.17
47 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (45 bp):
CCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCG
Found at i:160646 original size:90 final size:90
Alignment explanation
Indices: 160410--160662 Score: 260
Period size: 90 Copynumber: 2.8 Consensus size: 90
160400 GGGCCGGCTT
* * * *
160410 GTGCCAATGGTGCTCGAGGCAATCCG-CCTGCACCAGGGGCCATTTTCTGCCGATGGTGGTCAAG
1 GTGCCGATGGTGATCGAGGCAA-CCGTCC-GCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAG
* * * * * *
160474 GCAACTGCCCGCACCAAGGCTCAGCAT
64 GCAACCGCCCACACAAAGACCCAGCAC
** * * * ** * *
160501 GTATCGATGGTGATCGAGGCAACCATCCTCACCAGGGGTCGA-CTAGTGCCAATGGTGCTCGAGG
1 GTGCCGATGGTGATCGAGGCAACCGTCCGCACCAGGGG-CCATCTTCTGCCGATGGTGGTCGAGG
*
160565 TAACCGCCCACACAAAGACCCAGCAC
65 CAACCGCCCACACAAAGACCCAGCAC
* *
160591 GTGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGC
1 GTGCCGATGGTGATCGAGGCAACCGTCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGC
160656 AA-CGCCC
66 AACCGCCC
160663 GCACCAGATG
Statistics
Matches: 127, Mismatches: 32, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
89 7 0.06
90 98 0.77
91 22 0.17
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (90 bp):
GTGCCGATGGTGATCGAGGCAACCGTCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGC
AACCGCCCACACAAAGACCCAGCAC
Found at i:160780 original size:178 final size:179
Alignment explanation
Indices: 160410--160802 Score: 445
Period size: 178 Copynumber: 2.2 Consensus size: 179
160400 GGGCCGGCTT
* * *
160410 GTGCCAATGGTGCTCGAGGCAATCCGCCTGCACCAGGGGCCATTTTCTGCCGATGGTGGTCAAGG
1 GTGCCGATGGTGTTCGAGGCAA-CCGCC-GCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGG
* * * *
160475 CAACTGCCCGCACCAAGGCTCAGCATGTATCGATGGTGATCGAGGCAACCATCCTCACCAGGGGT
64 CAACTGCCCGCACCAAGGCTCAGCATGTATCGATGGTGATAGAGGCAACCACCCGCACCAGGGCT
160540 CGACTAGTGCCAATGGTGCTCGAGGTAACCGCCCACACAAAGACCCAGCAC
129 CGACTAGTGCCAATGGTGCTCGAGGTAACCGCCCACACAAAGACCCAGCAC
* *
160591 GTGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGC
1 GTGCCGATGGTGTTCGAGGCAACCG-CCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGC
* * * * * *
160656 AAC-GCCCGCACCAGATGC-CATCTTGTGTC-ATGGTGGTAGAGGCAACCGCCCGCACCAAGGGC
65 AACTGCCCGCACCA-AGGCTCAGCATGTATCGATGGTGATAGAGGCAACCACCCGCACC-AGGGC
* * * ** * * * *
160718 T-GGCTGGTGCCGATGGTGCTCGAGGTAATGGTCTACACCAAGGCCC-GACAC
128 TCGACTAGTGCCAATGGTGCTCGAGGTAACCGCCCACACAAAGACCCAG-CAC
** *
160769 GTGTTGATGGTGTTTGAGGCAACCGCCCGCACCA
1 GTGCCGATGGTGTTCGAGGCAACCG-CCGCACCA
160803 AGGCTCTGCA
Statistics
Matches: 180, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
177 1 0.01
178 91 0.51
179 23 0.13
180 43 0.24
181 22 0.12
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (179 bp):
GTGCCGATGGTGTTCGAGGCAACCGCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGCA
ACTGCCCGCACCAAGGCTCAGCATGTATCGATGGTGATAGAGGCAACCACCCGCACCAGGGCTCG
ACTAGTGCCAATGGTGCTCGAGGTAACCGCCCACACAAAGACCCAGCAC
Found at i:160950 original size:90 final size:90
Alignment explanation
Indices: 160820--161015 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 90
160810 GCATGTGCAG
* * * * * *
160820 ATGGTGGTCGAGGTAACCACCTGTACCACGGCCTAACATGTACCGATGGTGTTCGAT-GAAATTG
1 ATGGTGGTCGAGGCAACCACCTGTACCAAGGCCCAACATGTACCGATGGGGATCG-TGGAAATCG
* *
160884 CCTGCACCAGGGGCCATCTTGTGCCA
65 CCTGCACCAGGGCCCAGCTTGTGCCA
* * ** *
160910 ATGGTGGTCGACGCAACCACCTGTACCAAGGCCCAGCATGTGTCGATGGGGATCGTGGCAATCGC
1 ATGGTGGTCGAGGCAACCACCTGTACCAAGGCCCAACATGTACCGATGGGGATCGTGGAAATCGC
*
160975 CTGCACTAGGGCCCAGCTTGTGCCA
66 CTGCACCAGGGCCCAGCTTGTGCCA
*
161000 ATGGCGGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
161016 GTGCCCGTTC
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 1 0.01
90 88 0.99
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACCACCTGTACCAAGGCCCAACATGTACCGATGGGGATCGTGGAAATCGC
CTGCACCAGGGCCCAGCTTGTGCCA
Found at i:161015 original size:45 final size:44
Alignment explanation
Indices: 160393--161015 Score: 141
Period size: 45 Copynumber: 13.9 Consensus size: 44
160383 CGTGACACCC
* *
160393 GCACCAAGGG-CCGGCTTGTGCCAATGGTGCTCGAGGCAATCCGCCT
1 GCACC-AGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAA-CCGCCT
* ** * * * * *
160439 GCACCAGGGGCCATTTTCTGCCGATGGTGGTCAAGGCAACTGCCC
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * ** * * *
160484 GCACCAAGGCTCAGCATGTATCGATGGTGATCGAGGCAACCATCCT
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACC-GCCT
** * * * *
160530 -CACCAGGGGTC-GACTAGTGCCAATGGTGCTCGAGGTAACCGCCC
1 GCACCAGGGCCCAG-CTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * * ** * *
160574 ACACAAAGACCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCC-
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCG-CCT
* * * * * *
160619 GCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAA-CGCCC
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * * *
160663 GCACCAGATG-CCATCTTGTGTC-ATGGTGGTAGAGGCAACCGCCC
1 GCACCAG-GGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
** * * * * ** *
160707 GCACCAAGGG-CTGGCTGGTGCCGATGGTGCTCGAGGTAATGGTCT
1 GCACC-AGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * ** *** * * *
160752 ACACCAAGGCCC-GACACGTGTTGATGGTGTTTGAGGCAACCGCCC
1 GCACCAGGGCCCAG-CTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * * * *
160797 GCACCAAGGCTCTGCATGTG-CAGATGGTGGTCGAGGTAACCACCT
1 GCACCAGGGCCCAGCTTGTGCCA-ATGG-GGTCGAGGCAACCGCCT
* * * * * * * * * * **
160842 GTACCACGGCCTAACATGTACCGATGGTGTTCGATGAAATTGCCT
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * *
160887 GCACCAGGGGCCATCTTGTGCCAATGGTGGTCGACGCAACCACCT
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAACCGCCT
* * * * * * *
160932 GTACCAAGGCCCAGCATGTGTCGATGGGGATCGTGGCAATCGCCT
1 GCACCAGGGCCCAGCTTGTGCCAATGGGG-TCGAGGCAACCGCCT
*
160977 GCACTAGGGCCCAGCTTGTGCCAATGGCGGTCGAGGCAA
1 GCACCAGGGCCCAGCTTGTGCCAATGG-GGTCGAGGCAA
161016 GTGCCCGTTC
Statistics
Matches: 418, Mismatches: 141, Indels: 37
0.70 0.24 0.06
Matches are distributed among these distances:
43 17 0.04
44 47 0.11
45 318 0.76
46 36 0.09
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
GCACCAGGGCCCAGCTTGTGCCAATGGGGTCGAGGCAACCGCCT
Found at i:162000 original size:26 final size:26
Alignment explanation
Indices: 161960--162012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
161950 GTTGACTTAG
* *
161960 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
161986 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
162012 G
1 G
162013 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:162133 original size:197 final size:197
Alignment explanation
Indices: 161804--162184 Score: 464
Period size: 197 Copynumber: 1.9 Consensus size: 197
161794 CGTTGTGTGC
* * ** *
161804 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTACAGTAGCAGGACCCGCACCAGGATCGGCCAAA
1 TCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAGGACCAACACCAGGATCGGACAAA
* * * * * * * **
161869 CGTAGAGGGGGATCGGGTCGATCCCTGACTTATGCATCCTACCTCTCTGACCGGCTGAGTGCCCG
66 CGCAGAGGGGGACCAGGCCGATCCCTGACTTAGGCATCCTACCTCTCCGACCAGCTGAGCACCCG
* * *
161934 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGCATACGGAGGT
131 CACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGGT
161998 CAT
195 CAT
* * *
162001 TCCCAGTCTAAGATCAAACCGGACTGAGGGTTACGGCAGCAGGACCAACAGCAGGATC-GACAGC
1 TCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAGGACCAACACCAGGATCGGACA-A
* * * * *
162065 ACGCAG-GGGGAGACCAGGCCGAT-CCTCGGCTTGGGCATTCTGCCTCTCCGGCCAGCTGAGCAC
65 ACGCAGAGGGG-GACCAGGCCGATCCCT-GACTTAGGCATCCTACCTCTCCGACCAGCTGAGCAC
*
162128 CCGCACACTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCGCACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
162185 CCCAACCGAA
Statistics
Matches: 154, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
196 10 0.06
197 143 0.93
198 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (197 bp):
TCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAGGACCAACACCAGGATCGGACAAA
CGCAGAGGGGGACCAGGCCGATCCCTGACTTAGGCATCCTACCTCTCCGACCAGCTGAGCACCCG
CACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGGTC
AT
Found at i:162771 original size:157 final size:157
Alignment explanation
Indices: 162473--162840 Score: 380
Period size: 157 Copynumber: 2.3 Consensus size: 157
162463 GACTGAGCAC
* * * * * * ** * *
162473 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTGGTCTAAGTCCCAATCG
1 CCGCGCGCTCGATTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCTAAACCCCAACCA
** * * * *
162538 GATTGAGGGACCCGCAGCAGGATCGATAGCACGCAAAAAGGGACTGGGTCGATCCTCGGCTTGCA
66 GACCGAGGGACCCGCAGCAGGATCGATAGCACGCAAAAAGGGACCGAGTCGATCCTCGACTTACA
* * * *
162603 CATTCTGGCTCTCTGGCCAGCTGAGTG
131 CATTATGGCTCTCCGGCCAGCTAAGCG
162630 CC-CAGACGCTC-ATTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCTAAACCCCAAC
1 CCGC-G-CGCTCGATTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCTAAACCCCAAC
** * ** * *
162693 CAGACCGAGGGACCCGCAGTGGGATCGATAGCACGCAGAGGGGGACCGAGTCGATCTTTGACTTA
64 CAGACCGAGGGACCCGCAGCAGGATCGATAGCACGCAAAAAGGGACCGAGTCGATCCTCGACTTA
* ***
162758 CGCATTATGGCTCTCCGGTTGGCTAAGCG
129 CACATTATGGCTCTCCGGCCAGCTAAGCG
* * * *
162787 CCTGCGTGCTCGTTTTATGGGTTGACTTAGGCATACGTAGTGCATTCTCGATCT
1 CC-GCGCGCTCGATTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCT
162841 TGACCAACCA
Statistics
Matches: 171, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.01
157 124 0.73
158 45 0.26
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
CCGCGCGCTCGATTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCTAAACCCCAACCA
GACCGAGGGACCCGCAGCAGGATCGATAGCACGCAAAAAGGGACCGAGTCGATCCTCGACTTACA
CATTATGGCTCTCCGGCCAGCTAAGCG
Found at i:170408 original size:45 final size:45
Alignment explanation
Indices: 170207--170513 Score: 244
Period size: 45 Copynumber: 6.8 Consensus size: 45
170197 TGGGGCATGT
* ** * *
170207 GCCCGCACCAAGGGCCAACGCGTGCCGATGGTGATCGATGCAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGATGCAACC
* * * * * * * *
170252 GCCCACACCAAGGG-CAACATGTGTCGATGGTGGTCGAGGCGACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGATGCAACC
* * * * *
170296 GCCCGTACCAAGGCCCAGCATGTGCCGATGGTGTTTGATGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGATGCAACC
* * *
170341 GCCCGCACC-AGAGGCCATCTTGTGCCGATGGTGTTTGATGCAATC
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGTTCGATGCAACC
* * * *
170386 GCCCGCACCAAGGGTCGGCTTGTACCGATGGTGGTCGA-GTCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGATG-CAACC
** * ***
170431 GCCTACACCAA-GGCCTAGCATGCATCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGTTCGATGCAACC
* * * *
170476 GCCCGCACTAAGGGTCGGCTTGTGCCGATGGTGGTCGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGA
170514 GGTAATCGCT
Statistics
Matches: 208, Mismatches: 47, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
44 41 0.20
45 161 0.77
46 6 0.03
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGATGCAACC
Found at i:173164 original size:45 final size:45
Alignment explanation
Indices: 173123--174452 Score: 239
Period size: 45 Copynumber: 29.5 Consensus size: 45
173113 CAAGGCATGT
* *
173123 GCCCACACCAAGGCCCGACATGTGTCGATGGTGTTCGAGGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * *
173168 GCCCGTACCAAGGCCCAACATGTGCCGATGGTGTTCGACGTAATC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * * **
173213 ACCTACACCAGGGGCCATCTTCTGTCGATGATGGTCGAGGCAAGA
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** ** * * * *
173258 GCCCACACCAAGGATCGGCTTGTGCTGATGGTGCTCGAGGTAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * **
173303 G-CCAGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGA
1 GCCCA-CACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* ** ** * *** *
173348 GCCCGCACCAAGGATCGGCTTACACCGATGGTGCTCGAGGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * ** * * * * * *
173393 GTCCGCACCAAGGGTCATCTTTTACCGATGGTGGTT-GAGGTAATC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGT-GTTCGAGGCAACC
* * * * *
173438 TCCCGCACCAAGGCCCAACACGTGTCGATGGTGTTCGAGGTAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * * * *
173483 GCCCGTACTAGGGGCCAGCATGGGCCGATGGTGTTCAACGTAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* *** * * * * * * **
173528 GTCTGTACCAGGGGCCATCTTCTGTCGATGGTGGTT-GAGGCAAGA
1 GCCCACACCAAGGCCCAACATGTGCCGATGGT-GTTCGAGGCAACC
* * * * *
173573 GCCCGCACCAAAGG-TCGACTTGTGCCGATGGTGCTCGAGGCAACC
1 GCCCACACC-AAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** *** * * * * *
173618 GCCTGCACCAAGGCCTTGCACGTGCCAATGGTGTTCGAAGTAATC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * * * *
173663 GCCTGCACTAAGGCCCAGCATGTGTCAATGGTGTTCGATGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
173708 GCCCGCACCAAAGG-CCATCTTGTGTCGATGCTGGTCGAGGCGACC
1 GCCCACACC-AAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * ** ***** * * *
173753 ACTCGTACCAAGGGTTGGCTTATGCCGATGGTGGTCGAGGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * * **
173798 GCCCATACCAGGGGCTATCTTCTGTCGATGTTGGTCGAGGCAAGA
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* ** ** * * *
173843 GCCCGCACCAAGGGACGGCTTGTGCCGATGGTGCTCGAGGCAATC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
*** * * * * * * * * * **
173888 ATTCGCACTAGGGGCCATCTTTTACCGATGGTGGTCGAGGTGACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
173933 GCCCGCACCAAGGCCCAACAGGTGCCGATGGTGGTCAAGGCAACT
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * ** ** *
173978 GCCCGTACCAGGGATCGGC-TAGTGCCGATGGTGCTCGAGGCAACC
1 GCCCACACCAAGGCCCAACAT-GTGCCGATGGTGTTCGAGGCAACC
* * *** ** * * *
174023 ACCCTTCACCAAGGTTTAGTATGTGCCAATGGTGGTCGAGGCAATC
1 GCCC-ACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * * * *
174069 GCCCGTACCAGGGGCCATCTTCTACCGATAGTGGTCGAGGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
174114 GCCTACACCAGGGGCCATCTTGTGCCGATGGTCG-TCGAGGCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGT-GTTCGAGGCAACC
*** * * * * * *
174159 GCTTGCACCAAGGGCCAGC-TGGTGTCGATGGTGCTCGAGCCAACA
1 GCCCACACCAAGGCCCAACAT-GTGCCGATGGTGTTCGAGGCAACC
* * ** * * *
174204 GCCCGCACCAAGGCTCGGCACGTGCCGATGGTGTTCGAGGTAATC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * * *
174249 GTTCACACCAAGGCTTC-GCATATGTCGATGGTGGTCGAGGTAACT
1 GCCCACACCAAGGC-CCAACATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
174294 GCTCGCATCATGGCCCAGCATGTGCCGATGGTGTTCGATGAAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * * *
174339 GCCTGCACTAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * ** * *** * * * *
174384 ACTCGTACCAAGGTCTGGCTTGTGCCGATAGTGGTCGAGCCAACC
1 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
* * *
174429 ACCTACACCAAGGCCCAGCATGTG
1 GCCCACACCAAGGCCCAACATGTG
174453 TCAATGGGGA
Statistics
Matches: 944, Mismatches: 322, Indels: 38
0.72 0.25 0.03
Matches are distributed among these distances:
44 19 0.02
45 875 0.93
46 49 0.05
47 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (45 bp):
GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGCAACC
Found at i:173282 original size:90 final size:90
Alignment explanation
Indices: 173188--173432 Score: 269
Period size: 90 Copynumber: 2.7 Consensus size: 90
173178 AGGCCCAACA
* * * **
173188 TGTGCCGATGGTGTTCGACGTAATCACCTA-CACCAGGGGCCATCTTCTGTCGATGATGGTCGAG
1 TGTGCCGATGGTGCTCGACGTAACCACC-AGCACCAAGGGCCATCTTCTACCGATGATGGTCGAG
173252 GCAAGAGCCCACACCAAGGATCGGCT
65 GCAAGAGCCCACACCAAGGATCGGCT
* * * *
173278 TGTGCTGATGGTGCTCGAGGTAACCGCCAGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGG
1 TGTGCCGATGGTGCTCGACGTAACCACCAGCACCAAGGGCCATCTTCTACCGATGATGGTCGAGG
* *
173343 TAAGAGCCCGCACCAAGGATCGGCT
66 CAAGAGCCCACACCAAGGATCGGCT
*** * * * * * * *
173368 TACACCGATGGTGCTCGAGGCAACCGTCC-GCACCAAGGGTCATCTTTTACCGATGGTGGTTGAG
1 TGTGCCGATGGTGCTCGACGTAACC-ACCAGCACCAAGGGCCATCTTCTACCGATGATGGTCGAG
173432 G
65 G
173433 TAATCTCCCG
Statistics
Matches: 133, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
89 1 0.01
90 130 0.98
91 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (90 bp):
TGTGCCGATGGTGCTCGACGTAACCACCAGCACCAAGGGCCATCTTCTACCGATGATGGTCGAGG
CAAGAGCCCACACCAAGGATCGGCT
Found at i:173433 original size:90 final size:90
Alignment explanation
Indices: 173218--173450 Score: 297
Period size: 90 Copynumber: 2.6 Consensus size: 90
173208 TAATCACCTA
* ** * * * ***
173218 CACCAGGGGCCATCTTCTGTCGATGATGGTCGAGGCAAGAGCCCACACCAAGGATCGGCTTGTGC
1 CACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGGCTTACAC
* *
173283 TGATGGTGCTCGAGGTAACCGCCAG
66 CGATGGTGCTCGAGGCAACCGCCAG
173308 CACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGGCTTACAC
1 CACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGGCTTACAC
173373 CGATGGTGCTCGAGGCAACCGTCC-G
66 CGATGGTGCTCGAGGCAACCG-CCAG
* * * ***
173398 CACCAAGGGTCATCTTTTACCGATGGTGGTTGAGGTAATCTCCCGCACCAAGG
1 CACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGG
173451 CCCAACACGT
Statistics
Matches: 125, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
90 123 0.98
91 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (90 bp):
CACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGATCGGCTTACAC
CGATGGTGCTCGAGGCAACCGCCAG
Found at i:173602 original size:135 final size:132
Alignment explanation
Indices: 173463--173885 Score: 344
Period size: 135 Copynumber: 3.1 Consensus size: 132
173453 CAACACGTGT
* * * *
173463 CGATGGTGTTCGAGGTAACCGCCCGTACTAGGGGCCAGCATGGGCCGATGGTGTTCAACGTAACC
1 CGATGGTGCTCGAGGCAACCGCCCGTACCA-GGGCCAGCATGTGCCGATGGTGTTCAA-GTAACC
*
173528 GTCTGTACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCCGCACCAAAGGTCGACT
64 GCCTGTACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCCGCACCAAAGG-CGACT
173593 TGTGC
128 TGTGC
* * * * * * *
173598 CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGCCTTGCACGTGCCAATGGTGTTCGAAGTAATC
1 CGATGGTGCTCGAGGCAACCGCCCGTACCAGGGCC-AGCATGTGCCGATGGTGTTC-AAGTAACC
* * * * * * * * * ** *
173663 GCCTGCACTAAGGCCCAGCATGTGTCAATGGT-GTTCGATGCAACCGCCCGCACCAAAGGCCATC
64 GCCTGTACCAGGGGCCATCTTCTGTCGATGGTGGTT-GAGGCAAGAGCCCGCACCAAAGGCGA-C
*
173727 TTGTGT
127 TTGTGC
* * * * * *** * * * * *
173733 CGATGCTGGTCGAGGCGACCACTCGTACCAAGGGTTGGCTTATGCCGATGGTGGTCGAGGCAACC
1 CGATGGTGCTCGAGGCAACCGCCCGTACC-AGGGCCAGCATGTGCCGATGGTGTTC-AAGTAACC
** * * * * *
173798 GCCCATACCAGGGGCTATCTTCTGTCGATGTTGGTCGAGGCAAGAGCCCGCACCAAGGGACGGCT
64 GCCTGTACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCCGCACCAAAGG-CGACT
173863 TGTGC
128 TGTGC
173868 CGATGGTGCTCGAGGCAA
1 CGATGGTGCTCGAGGCAA
173886 TCATTCGCAC
Statistics
Matches: 214, Mismatches: 67, Indels: 14
0.73 0.23 0.05
Matches are distributed among these distances:
134 9 0.04
135 197 0.92
136 8 0.04
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.21
Consensus pattern (132 bp):
CGATGGTGCTCGAGGCAACCGCCCGTACCAGGGCCAGCATGTGCCGATGGTGTTCAAGTAACCGC
CTGTACCAGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCCGCACCAAAGGCGACTTGT
GC
Found at i:174190 original size:181 final size:181
Alignment explanation
Indices: 173863--174202 Score: 403
Period size: 181 Copynumber: 1.9 Consensus size: 181
173853 AGGGACGGCT
* ** * * *
173863 TGTGCCGATGGTGCTCGAGGCAATCATTCGCACTAGGGGCCATCTTTTACCGATGGTGGTCGAGG
1 TGTGCCAATGGTGCTCGAGGCAATCACCCGCACCAGGGGCCATCTTCTACCGATAGTGGTCGAGG
** * * * * *
173928 TGACCGCCCGCACCAAGGCCCAACAGGTGCCGATGGTGGTCAAGGCAACTGCCCGTACCAGGGAT
66 CAACCGCCCACACCAAGGCCCAACAGGTGCCGATGGTCGTCAAGGCAACCGCCCGCACCAGGGAC
* *
173993 CGGCTAGTGCCGATGGTGCTCGAGGCAACCACCCTTCACCAAGGTTTAGTA
131 CAGCTAGTGCCGATGGTGCTCGAGCCAACCACCCTTCACCAAGGTTTAGTA
* * *
174044 TGTGCCAATGGTGGTCGAGGCAATCGCCCGTACCAGGGGCCATCTTCTACCGATAGTGGTCGAGG
1 TGTGCCAATGGTGCTCGAGGCAATCACCCGCACCAGGGGCCATCTTCTACCGATAGTGGTCGAGG
* * * * ** * **
174109 CAACCGCCTACACCAGGGGCCATCTTGTGCCGATGGTCGTCGAGGCAACCGCTTGCACCAAGGG-
66 CAACCGCCCACACCAAGGCCCAACAGGTGCCGATGGTCGTCAAGGCAACCGCCCGCACC-AGGGA
* *
174173 CCAGCTGGTGTCGATGGTGCTCGAGCCAAC
130 CCAGCTAGTGCCGATGGTGCTCGAGCCAAC
174203 AGCCCGCACC
Statistics
Matches: 129, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
181 125 0.97
182 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (181 bp):
TGTGCCAATGGTGCTCGAGGCAATCACCCGCACCAGGGGCCATCTTCTACCGATAGTGGTCGAGG
CAACCGCCCACACCAAGGCCCAACAGGTGCCGATGGTCGTCAAGGCAACCGCCCGCACCAGGGAC
CAGCTAGTGCCGATGGTGCTCGAGCCAACCACCCTTCACCAAGGTTTAGTA
Found at i:175493 original size:26 final size:26
Alignment explanation
Indices: 175457--175535 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
175447 GTTGACTTAG
*
175457 GCATACGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
175483 GCATATGGAGTTCATTCCAAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
175509 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
175535 G
1 G
175536 ATCGGACCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:177649 original size:45 final size:45
Alignment explanation
Indices: 177612--179438 Score: 508
Period size: 45 Copynumber: 40.7 Consensus size: 45
177602 GAGGCATGTG
* * *
177612 CCCACACCAAGGCCCGGCATGTGCCGATGTTGTTCGAGGCAACCA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * *
177657 CCCACACCAAGGCCTAGCATATGCCGATGGTGTTCGAGGCAATCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * * * * * * *
177702 GCCGCACTAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAA-GA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * ** * * * * * *
177746 GCTCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGTAACCG
1 -CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * * * **
177792 CCCGTACCAAGGGCCATCTTTTGTCGATGGTGGTCGTGGCAAGAA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * * * * *
177837 CCCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * *
177882 CCCGCACCAAGGCCCAGCACATGCCGATGGTATTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * * * *
177927 CCCGTACTAGGGTCCAACATGTGCCGATGGTGTTCGATGCAATCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * * * *
177972 CCCGCACCAGGGGCCATCTTTTGTCGATGGTGGTCGAGGCAA-GA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * * * *
178016 GCCCGCACCAAGGGTCGGCTTATGCCGATAGTGCTT-GAGGCAACCG
1 -CCCACACCAAGGCCCAGCATATGCCGATGGTG-TTCGAGGCAACCA
** * * ** *
178062 CCCGTACCAAGACCTAGCACGTGCCGATGGTGTTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * *
178107 CCTGCACCAAGGCCCAGCATGTGTCGATGTTGGTCGAGGTAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * *** *
178152 CCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACATAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * * * *
178197 CCCGCA-CTAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * * * *
178241 CCCGCACCAAGGGTCAGCTTGTGCCGATGGTGGTCGAGGTAACC-
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * ** * * *
178285 GCCAGCACCAAGGGTCGGTTTGTGCCGATGGTGGTCGAAGCAACCA
1 CCCA-CACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * **
178331 CCCACACCAAGGCCTAGCATGTGCCGATGGTGTTCAATGTAACTG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * *
178376 CCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * ** * * * * *
178421 CCCGTACCAGGGGCCATCTTCTATCGATGATGGTCAAGGTAA-GA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * * * * ** *
178465 GCCCGCACCAAGGGTCGGCTTGTGTCGATGGTACTCGAGGCAACCG
1 -CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * *** * *** * * *
178511 CTCGTACCAAGGACCATTTTCTATTGATGATGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * *
178556 TTCGCACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACCA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * *
178601 CCTGCACCAGGGGCCAGC-TAATACCGATAGTGCAT-GAGGCAACCG
1 CCCACACCAAGGCCCAGCAT-ATGCCGATGGTG-TTCGAGGCAACCA
*** ** **
178646 CCCGTTCCAAGGCCTGGCACGTGCCGATGGTGTTCGAGGCAACCA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * *
178691 CTCACACCAAAGG-CCATCTTCTGCCAATGGTGGTCGAGGCAA-CG
1 CCCACACC-AAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * *
178735 CCCGCACCAAGGCTTAGCATGTGCCGATGGTGGTT-GAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGT-GTTCGAGGCAACCA
* * * * * **
178780 CCCGCACCAAGGGCCTGC-TAATGCCGATAGTGCTCGAGGCAACTG
1 CCCACACCAAGGCCCAGCAT-ATGCCGATGGTGTTCGAGGCAACCA
* * * ** *
178825 CCCGCACCAAGGCTCGGCACGTGCCGATGGTGTTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * * ** * *
178870 CCCACACCAGGGGCTATCTTTTACTAATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* ** * * *
178915 CCCGCGTCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * *
178960 CCCGCACCATGGGCCA-TATTCTGTCGATGGTGGTT-GAAGCAACCA
1 CCCACACCAAGGCCCAGCA-TATGCCGATGGT-GTTCGAGGCAACCA
** * * * * *
179005 CCCGTACCAAGGCTCAGCATGTACCGATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * *
179050 CCCGCACCAGGGGCCGGC-TAGTGCTGATGGTGCTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATA-TGCCGATGGTGTTCGAGGCAACCA
* * * ** *
179095 CTCGCACCAAGGCCCGGCACGTGTCGATGGTGTTCGAGGCAACCA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
** * * * * * * * *
179140 CCCGTACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGACAACCA
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
*** * * * ** * *
179185 CTTGCACCAAGGCCCAG-ATGTGCTGATGGTGTTCAACACAATCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * * ** * *
179229 CCCTCACCAGGGGCCATCTTGTATCGATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
* * * * * **
179274 CCCACACCAAGGGCCGGC-TGATGTCGATGGTGCTCGTGGCAACGG
1 CCCACACCAAGGCCCAGCAT-ATGCCGATGGTGTTCGAGGCAACCA
* * * * *
179319 CTCACACCAAAGCCC-G-ATACGTGTCGATGGTGTTTGAGGCAACCG
1 CCCACACCAAGGCCCAGCATA--TGCCGATGGTGTTCGAGGCAACCA
* ** * * *
179364 CCCACACCATGG-CTTGACATGTGCCGATGGTGGTCGAGGCAACCG
1 CCCACACCAAGGCCCAG-CATATGCCGATGGTGTTCGAGGCAACCA
* * * *
179409 CCCACACCAGGGCCCAACTTGTGCCGATGG
1 CCCACACCAAGGCCCAGCATATGCCGATGG
179439 CGGTCAAGGC
Statistics
Matches: 1334, Mismatches: 411, Indels: 74
0.73 0.23 0.04
Matches are distributed among these distances:
43 5 0.00
44 107 0.08
45 1207 0.90
46 13 0.01
47 2 0.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (45 bp):
CCCACACCAAGGCCCAGCATATGCCGATGGTGTTCGAGGCAACCA
Found at i:177773 original size:90 final size:90
Alignment explanation
Indices: 177633--179450 Score: 1278
Period size: 90 Copynumber: 20.2 Consensus size: 90
177623 GCCCGGCATG
* * * * * *
177633 TGCCGATGTTGTTCGAGGCAACCACCCACACCAAGGC-CTAGCATATGCCGATGGTGTTCGAGGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTC-AGCATGTGCCGATGGTGGTCGAGGC
* * *
177697 AATCGGCCGCACTAGGGGCCATCTTC
65 AACCGCCCGCACCAGGGGCCATCTTC
* * ** * * * * *
177723 TACCGATGGTGGTCGAGGTAAGAGCTCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGTA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * *
177788 ACCGCCCGTACCAAGGGCCATCTTT
66 ACCGCCCGCACCAGGGGCCATCTTC
* * *** * * *
177813 TGTCGATGGTGGTCGTGGCAAGAACCCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * *
177878 ACCGCCCGCACCAAGGCCCAGC-AC
66 ACCGCCCGCACCAGGGGCCATCTTC
** * * * * * *
177902 ATGCCGATGGTATTCGAGGCAACCGCCCGTA-CTAGGGTCCAACATGTGCCGATGGTGTTCGATG
1 -TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCT-CAGCATGTGCCGATGGTGGTCGAGG
* *
177966 CAATCGCCCGCACCAGGGGCCATCTTT
64 CAACCGCCCGCACCAGGGGCCATCTTC
* ** * * * * * * *
177993 TGTCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGTCGGCTTATGCCGATAGTGCTTGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * * *
178058 ACCGCCCGTACCA-AGACCTAGC-AC
66 ACCGCCCGCACCAGGGGCC-ATCTTC
* * * * * *
178082 GTGCCGATGGTGTTCGAGGCAACCGCCTGCACCAAGGCCCAGCATGTGTCGATGTTGGTCGAGGT
1 -TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGC
* * * * *
178147 AACCGCCCGCACCAAGGCCCAGCATG
65 AACCGCCCGCACCAGGGGCCATCTTC
* *** * * * *
178173 TGCCGATGGTGTTCGACATAACCGCCCGCACTAGGGC-CATCTTGTGCCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * * *
178237 ATCGCCCGCACCAAGGGTCAGCTTG
66 ACCGCCCGCACCAGGGGCCATCTTC
* * * * ** *
178262 TGCCGATGGTGGTCGAGGTAACCGCCAGCACCAAGGGTCGGTTTGTGCCGATGGTGGTCGAAGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * * * *
178327 ACCACCCACACCA-AGGCCTAGCATG
66 ACCGCCCGCACCAGGGGCC-ATCTTC
* * * * * * * * *
178352 TGCCGATGGTGTTCAATGTAACTGCCCGCACCAGGGGC-CATCTTATGCCGATGGTGGTCGAGGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGCTCAGCATGTGCCGATGGTGGTCGAGGC
*
178416 AACCGCCCGTACCAGGGGCCATCTTC
65 AACCGCCCGCACCAGGGGCCATCTTC
** * * * ** * * * * **
178442 TATCGATGATGGTCAAGGTAAGAGCCCGCACCAAGGGTCGGCTTGTGTCGATGGTACTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * * *
178507 ACCGCTCGTACCAAGGACCATTTTC
66 ACCGCCCGCACCAGGGGCCATCTTC
*** * ** * *
178532 TATTGATGATGGTCGAGGCAACCGTTCGCACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * * **
178597 ACCACCTGCACCAGGGGCCAGCTAA
66 ACCGCCCGCACCAGGGGCCATCTTC
* * * ** * * *
178622 TACCGATAGTGCAT-GAGGCAACCGCCCGTTCCAAGGC-CTGGCACGTGCCGATGGTGTTCGAGG
1 TGCCGATGGTG-GTCGAGGCAACCGCCCGCACCAAGGCTC-AGCATGTGCCGATGGTGGTCGAGG
* * * **
178685 CAACCACTCACACCAAAGGCCATCTTC
64 CAACCGCCCGCACCAGGGGCCATCTTC
* * *
178712 TGCCAATGGTGGTCGAGGCAA-CGCCCGCACCAAGGCTTAGCATGTGCCGATGGTGGTTGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* **
178776 ACCGCCCGCACCAAGGGCC-TGCTAA
66 ACCGCCCGCACCAGGGGCCAT-CTTC
* * * * * *
178801 TGCCGATAGTGCTCGAGGCAACTGCCCGCACCAAGGCTCGGCACGTGCCGATGGTGTTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * *
178866 ACCGCCCACACCAGGGGCTATCTTT
66 ACCGCCCGCACCAGGGGCCATCTTC
* ** ** * *
178891 TACTAATGGTGGTCGAGGCAACCGCCCGCGTCAAGGCCCAGCATGTGCCGATGGTGCTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* *
178956 ACCGCCCGCACCATGGGCCATATTC
66 ACCGCCCGCACCAGGGGCCATCTTC
* * * * * *
178981 TGTCGATGGTGGTTGAAGCAACCACCCGTACCAAGGCTCAGCATGTACCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
** **
179046 ACCGCCCGCACCAGGGGCCGGCTAG
66 ACCGCCCGCACCAGGGGCCATCTTC
* * * * * * * *
179071 TGCTGATGGTGCTCGAGGCAACCGCTCGCACCAAGGCCCGGCACGTGTCGATGGTGTTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* *
179136 ACCACCCGTACCAGGGGCCATCTTC
66 ACCGCCCGCACCAGGGGCCATCTTC
* * * ** * * * * **
179161 TGTCGATGGTGGTCGAGACAACCACTTGCACCAAGGCCCAG-ATGTGCTGATGGTGTTCAACACA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
* * *
179225 ATCGCCCTCACCAGGGGCCATCTTG
66 ACCGCCCGCACCAGGGGCCATCTTC
** * * * * *
179250 TATCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGC-CGGC-TGATGTCGATGGTGCTCGTGG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA-GGCTCAGCATG-TGCCGATGGTGGTCGAGG
* * * ** * *
179313 CAACGGCTCACACCAAAGCCCGATAC--G
64 CAACCGCCCGCACCAGGGGCC-AT-CTTC
* * * * * *
179340 TGTCGATGGTGTTTGAGGCAACCGCCCACACCATGGCT-TGACATGTGCCGATGGTGGTCGAGGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAG-CATGTGCCGATGGTGGTCGAGGC
* * * *
179404 AACCGCCCACACCAGGGCCCAACTTG
65 AACCGCCCGCACCAGGGGCCATCTTC
* *
179430 TGCCGATGGCGGTCAAGGCAA
1 TGCCGATGGTGGTCGAGGCAA
179451 GCCCGTTCCA
Statistics
Matches: 1340, Mismatches: 357, Indels: 62
0.76 0.20 0.04
Matches are distributed among these distances:
88 2 0.00
89 232 0.17
90 1083 0.81
91 22 0.02
92 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGCA
ACCGCCCGCACCAGGGGCCATCTTC
Found at i:177843 original size:135 final size:134
Alignment explanation
Indices: 177611--179488 Score: 918
Period size: 135 Copynumber: 13.9 Consensus size: 134
177601 CGAGGCATGT
* * * * * * ** *
177611 GCCCACACCAAGGCCCGGCATGTGCCGATGTTGTTCGAGGCAACCACCCACACCAA-GGCCTAGC
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCC-ATC
* * * * * * * *
177675 ATATGCCGATGGTGTTCGAGGCAATCGGCCGCACTAGGGGCCATCTTCTACCGATGGTGGTCGAG
64 ATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
**
177740 GTAAGA
129 GTAACC
* * * *
177746 GCTCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGTAACCGCCCGTACCAAGGGCCATCT
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATCA
* * * *** ** *
177811 TTTGTCGATGGTGGTCGTGGCAAGAACCCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGG
65 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
*
177876 CAACC
130 TAACC
* * *** ** * *
177881 GCCCGCACCAAGGCCCAGCACATGCCGATGGTATTCGAGGCAACCGCCCGTACTAGGGTCCAACA
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGG-CCATCA
* * * * * *
177946 TGTGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCTTTTGTCGATGGTGGTCGAGG
65 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* **
178011 CAAGA
130 TAACC
* * * * * * *
178016 GCCCGCACCAAGGGTCGGCTTATGCCGATAGTGCTTGAGGCAACCGCCCGTACCAA-GACCTAGC
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCC-ATC
* * * * * * * *
178080 ACGTGCCGATGGTGTTCGAGGCAACCGCCTGCACCAAGGCCCAGCATGTGTCGATGTTGGTCGAG
64 ATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
178145 GTAACC
129 GTAACC
* * * * *** * * *
178151 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGACATAACCGCCCGCACTAGGGCCATCTT
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGGCCATCAT
*
178216 GTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGTCAGCTTGTGCCGATGGTGGTCGAGGT
66 GTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGT
178281 AACC
131 AACC
* * * * * ** *
178285 GCCAGCACCAAGGGTCGGTTTGTGCCGATGGTGGTCGAAGCAACCACCCACACCAA-GGCCTAGC
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCC-ATC
* * * * * * *
178349 ATGTGCCGATGGTGTTCAATGTAA-CTGCCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGA
64 ATGTGCCGATGGTGGTCGAGGCAATC-GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA
*
178413 GGCAACC
128 GGTAACC
* * ** * ** * * * ** * * **
178420 GCCCGTACCAGGGGC-CATCTTCTATCGATGATGGTCAAGGTAAGAGCCCGCACCAAGGGTCGGC
1 GCCCGCACCA-AGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATC
* * ** * * * * ** * *** *
178484 TTGTGTCGATGGTACTCGAGGCAACCGCTCGTACCAAGGACCATTTTCTATTGATGATGGTCGAG
64 ATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
*
178549 GCAACC
129 GTAACC
** * ** * * * * * *
178555 GTTCGCACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGGCCAGC-
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATCA
* * * * * ** * ** *
178619 TAATACCGATAGTGCAT-GAGGCAACCGCCCGTTCCAA-GGCCTGGCACGTGCCGATGGTGTTCG
65 T-GTGCCGATGGTG-GTCGAGGCAATCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCG
*
178682 AGGCAACC
127 AGGTAACC
* * * ** * * * * *
178690 ACTCACACCAAAGGC-CATCTTCTGCCAATGGTGGTCGAGGCAA-CGCCCGCACCAA-GGCTTAG
1 GCCCGCACC-AAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGC-CAT
* * * ** * *
178752 CATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCTGCTAATGCCGATAGTGCTCGA
63 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA
* *
178817 GGCAACT
128 GGTAACC
** * ** * * *
178824 GCCCGCACCAAGGCTCGGCACGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGGGCTATCT
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATCA
* * ** * ** * * *
178889 TTTACTAATGGTGGTCGAGGCAACCGCCCGCGTCAAGGCCCAGCATGTGCCGATGGTGCTCGAGG
65 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
*
178954 CAACC
130 TAACC
* *** * * * * * *
178959 GCCCGCACCATGGGC-CATATTCTGTCGATGGTGGTTGAAGCAACCACCCGTACCAA-GGCTCAG
1 GCCCGCACCA-AGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGC-CAT
* * * * * * *
179022 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCGGCTAGTGCTGATGGTGCTCGA
63 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA
*
179087 GGCAACC
128 GGTAACC
* * ** * * * * *
179094 GCTCGCACCAAGGCCCGGCACGTGTCGATGGTGTTCGAGGCAACCACCCGTACCAGGGGCCATCT
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATCA
* * * * * ** * * * * * **
179159 TCTGTCGATGGTGGTCGAGACAACCACTTGCACCAAGGCCCAG-ATGTGCTGATGGTGTTCAACA
65 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* *
179223 CAATC
130 TAACC
* * ** ** ** **
179228 GCCCTCACCAGGGGC-CATCTTGTATCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGCCGGC
1 GCCCGCACCA-AGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCATC
* * * * * * * * * * * *
179292 -TGATGTCGATGGTGCTCGTGGCAA-CGGCTCACACCAA-AGCCCGATACGTGTCGATGGTGTTT
64 ATG-TGCCGATGGTGGTCGAGGCAATC-GCCCGCACCAAGGGCCAGCT-TGTGCCGATGGTGGTC
*
179354 GAGGCAACC
126 GAGGTAACC
* * * * * ** * * *
179363 GCCCACACCATGGCTTGACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAACT
1 GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGG-CCATCA
* * ** * * *
179428 TGTGCCGATGGCGGTCAAGGCAA--GCCCGTTCCAAAGGG-CAGCCTGTGCCAATGATGGTCGA
65 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGA
179489 TGCATGTGCC
Statistics
Matches: 1318, Mismatches: 388, Indels: 76
0.74 0.22 0.04
Matches are distributed among these distances:
133 31 0.02
134 320 0.24
135 938 0.71
136 29 0.02
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (134 bp):
GCCCGCACCAAGGCTCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGGCCATCAT
GTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGT
AACC
Found at i:179304 original size:449 final size:449
Alignment explanation
Indices: 177636--179327 Score: 1032
Period size: 449 Copynumber: 3.8 Consensus size: 449
177626 CGGCATGTGC
* * * * * * * * * *
177636 CGATGTTGTTCGAGGCAACCACCCACACCAAGGCCTAGCATATGCCGATGGTGTTCGAGGCAATC
1 CGATGATGGTCGAAGCAACCACCCGCACCAAGGCCCAACATGTACCGATGGTGGTCGAGGCAACC
** * * ** * * * ** * **
177701 GGCCGCACTAGGGGCCATCTTCTACCGATGGTG-GTCGAGGTAAGAGCTCGCACCAAGGATCGGC
66 ACCCGCACCAGGGGCCAGCTAATACCGATAGTGCAT-GAGGCAACCGCCCGCACCAAGGCCCGGC
** * * * ** * * * * *
177765 TTGTGCCGATGGTGGTCGAGGTAACCGCCCGTACCAAGGGCCATCTTTTGTCGATGGTGGTCGTG
130 ACGTGCCGATGGTGTTCGAGGCAACCACCCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGAG
* ** * * ** **
177830 GCAA-GAACCCGCACCAAGGATCGGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG
195 ACAACG--CCCGCACCAAGGCCCAGCATGTGCCGATGGTGGTTAACACAACCGCCCGCACCAAGG
* * * * ** ** * * ** *
177894 CCCAGC-ACATGCCGATGGTATTCGAGGCAACCGCCCGTA-CTAGGGTCCAACATGTGCCGATGG
258 GCCTGCTA-ATACCGATAGTGCTCGAGGCAACCGCCCACACCAAGGCT-CGGCACGTGCCGATGG
* * * * * * * * * *
177957 TGTTCGATGCAATCGCCCGCACCAGGGGCCATCTTTTGTCGATGGTGGTCGAGGCAAGAGCCCGC
321 TGCTCGAGGCAACCGCCCACACCAGGGGCCATCTTCTATCAATGATGGTCAAGGCAACAGCCCGC
** * * * * * * * ** *
178022 ACCAAGGGTCGGCTTATGCCGATAGTGCTTGAGGCAACCGCCCGTACCAA-GACC-TAGCACGTG
386 ACCAAGGCCCAGCATGTGCCGATGGTACTCGAGGCAACCGCCCGCACCAAGGACCATA-TTC-TA
*
178085 C
449 T
* * * * * * ** * *
178086 CGATGGTGTTCGAGGCAACCGCCTGCACCAAGGCCCAGCATGTGTCGATGTTGGTCGAGGTAACC
1 CGATGATGGTCGAAGCAACCACCCGCACCAAGGCCCAACATGTACCGATGGTGGTCGAGGCAACC
* * * * * * * *** * * **
178151 GCCCGCACCAAGGCCCAGC-ATGTGCCGATGGTG-TTCGACATAACCGCCCGCA-CTAGGGCCAT
66 ACCCGCACCAGGGGCCAGCTA-ATACCGATAGTGCAT-GAGGCAACCGCCCGCACCAAGGCCCGG
** * * * * * * * * *
178213 CTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGTCAGCTTGTGCCGATGGTGGTCGA
129 CACGTGCCGATGGTGTTCGAGGCAACCACCCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGA
** * ** * ** * * * *
178278 GGTAACCGCCAGCACCAAGGGTCGGTTTGTGCCGATGGTGGTCGAA-GCAACCACCCACACCAA-
194 GACAA-CGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGGT-TAACACAACCGCCCGCACCAAG
* * * * * * * * * * ** ***
178341 GGCCTAGC-ATGTGCCGATGGTGTTCAATGTAACTGCCCGCACCAGGGGC-CATCTTATGCCGAT
257 GGCCT-GCTA-ATACCGATAGTGCTCGAGGCAACCGCCCACACCA-AGGCTCGGCACGTGCCGAT
* ** * * *
178404 GGTGGTCGAGGCAACCGCCCGTACCAGGGGCCATCTTCTATCGATGATGGTCAAGGTAAGAGCCC
319 GGTGCTCGAGGCAACCGCCCACACCAGGGGCCATCTTCTATCAATGATGGTCAAGGCAACAGCCC
** * * * * * *
178469 GCACCAAGGGTCGGCTTGTGTCGATGGTACTCGAGGCAACCGCTCGTACCAAGGACCATTTTCTA
384 GCACCAAGGCCCAGCATGTGCCGATGGTACTCGAGGCAACCGCCCGCACCAAGGACCATATTCTA
178534 T
449 T
* * *** *
178535 TGATGATGGTCGAGGCAACCGTTCGCACCAAGGCCCAACATGTGCCGATGGTGGTCGAGGCAACC
1 CGATGATGGTCGAAGCAACCACCCGCACCAAGGCCCAACATGTACCGATGGTGGTCGAGGCAACC
* ** *
178600 ACCTGCACCAGGGGCCAGCTAATACCGATAGTGCATGAGGCAACCGCCCGTTCCAAGGCCTGGCA
66 ACCCGCACCAGGGGCCAGCTAATACCGATAGTGCATGAGGCAACCGCCCGCACCAAGGCCCGGCA
* *
178665 CGTGCCGATGGTGTTCGAGGCAACCACTCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGAGG
131 CGTGCCGATGGTGTTCGAGGCAACCACCCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGAGA
** * **
178730 CAACGCCCGCACCAAGGCTTAGCATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCC
196 CAACGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGGTTAACACAACCGCCCGCACCAAGGGCC
* * * *
178795 TGCTAATGCCGATAGTGCTCGAGGCAACTGCCCGCACCAAGGCTCGGCACGTGCCGATGGTGTTC
261 TGCTAATACCGATAGTGCTCGAGGCAACCGCCCACACCAAGGCTCGGCACGTGCCGATGGTGCTC
* * * * * **
178860 GAGGCAACCGCCCACACCAGGGGCTATCTTTTA-CTAATGGTGGTCGAGGCAACCGCCCGCGTCA
326 GAGGCAACCGCCCACACCAGGGGCCATCTTCTATC-AATGATGGTCAAGGCAACAGCCCGCACCA
* * * *
178924 AGGCCCAGCATGTGCCGATGGTGCTCGAGGCAACCGCCCGCACCATGGGCCATATTCTGT
390 AGGCCCAGCATGTGCCGATGGTACTCGAGGCAACCGCCCGCACCAAGGACCATATTCTAT
* * * * *
178984 CGATGGTGGTTGAAGCAACCACCCGTACCAAGGCTCAGCATGTACCGATGGTGGTCGAGGCAACC
1 CGATGATGGTCGAAGCAACCACCCGCACCAAGGCCCAACATGTACCGATGGTGGTCGAGGCAACC
* * * * * * *
179049 GCCCGCACCAGGGGCCGGCTAGTGCTGATGGTGC-TCGAGGCAACCGCTCGCACCAAGGCCCGGC
66 ACCCGCACCAGGGGCCAGCTAATACCGATAGTGCAT-GAGGCAACCGCCCGCACCAAGGCCCGGC
* ** ** * *
179113 ACGTGTCGATGGTGTTCGAGGCAACCACCCGTACCAGGGGCCATCTTCTGTCGATGGTGGTCGAG
130 ACGTGCCGATGGTGTTCGAGGCAACCACCCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGAG
* * * * *
179178 ACAAC-CACTTGCACCAAGGCCCAG-ATGTGCTGATGGT-GTTCAACACAATCGCCCTCACCAGG
195 ACAACGC-C-CGCACCAAGGCCCAGCATGTGCCGATGGTGGTT-AACACAACCGCCCGCACCAAG
** * * * * *
179240 GGCCAT-CTTGTATCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGC-CGGC-TGATGTCGAT
257 GGCC-TGCTAATACCGATAGTGCTCGAGGCAACCGCCCACACCAA-GGCTCGGCACG-TGCCGAT
* * *
179302 GGTGCTCGTGGCAACGGCTCACACCA
319 GGTGCTCGAGGCAACCGCCCACACCA
179328 AAGCCCGATA
Statistics
Matches: 993, Mismatches: 225, Indels: 49
0.78 0.18 0.04
Matches are distributed among these distances:
448 14 0.01
449 791 0.80
450 184 0.19
451 4 0.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (449 bp):
CGATGATGGTCGAAGCAACCACCCGCACCAAGGCCCAACATGTACCGATGGTGGTCGAGGCAACC
ACCCGCACCAGGGGCCAGCTAATACCGATAGTGCATGAGGCAACCGCCCGCACCAAGGCCCGGCA
CGTGCCGATGGTGTTCGAGGCAACCACCCACACCAAAGGCCATCTTCTGCCAATGGTGGTCGAGA
CAACGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGGTTAACACAACCGCCCGCACCAAGGGCC
TGCTAATACCGATAGTGCTCGAGGCAACCGCCCACACCAAGGCTCGGCACGTGCCGATGGTGCTC
GAGGCAACCGCCCACACCAGGGGCCATCTTCTATCAATGATGGTCAAGGCAACAGCCCGCACCAA
GGCCCAGCATGTGCCGATGGTACTCGAGGCAACCGCCCGCACCAAGGACCATATTCTAT
Found at i:179449 original size:45 final size:45
Alignment explanation
Indices: 179355--179450 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
179345 ATGGTGTTTG
* *** * *
179355 AGGCAACCGCCCACACCATGGCTTGACATGTGCCGATGGTGGTCG
1 AGGCAACCGCCCACACCAGGGCCCAACATGTGCCGATGGCGGTCA
*
179400 AGGCAACCGCCCACACCAGGGCCCAACTTGTGCCGATGGCGGTCA
1 AGGCAACCGCCCACACCAGGGCCCAACATGTGCCGATGGCGGTCA
179445 AGGCAA
1 AGGCAA
179451 GCCCGTTCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.14
Consensus pattern (45 bp):
AGGCAACCGCCCACACCAGGGCCCAACATGTGCCGATGGCGGTCA
Found at i:180801 original size:26 final size:26
Alignment explanation
Indices: 180771--180823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
180761 GTTGACTTAG
*
180771 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
180797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
180823 G
1 G
180824 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:189730 original size:45 final size:45
Alignment explanation
Indices: 189655--189800 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 45
189645 CCGGCATGTG
* ** * *
189655 CCGATGGTGTTCGACACAACCGCCCACACCAGGGGCCATCTTCTA
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGGCCATCTTCTA
* * * * *
189700 CCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGG-CAGGCTTGTC
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGGCCA-TCTTCTA
* * * * * * *
189745 CCGATAGTGCTCGAGGCAACTGGCCGTACCAGAGGCCATCTTCTG
1 CCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGGCCATCTTCTA
*
189790 CCAATGGTGGT
1 CCGATGGTGGT
189801 AAAGGTAATA
Statistics
Matches: 75, Mismatches: 24, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
44 2 0.03
45 71 0.95
46 2 0.03
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGGCCATCTTCTA
Found at i:189881 original size:45 final size:46
Alignment explanation
Indices: 189832--190319 Score: 209
Period size: 45 Copynumber: 10.8 Consensus size: 46
189822 GGCCTAGTAT
* *
189832 GTGCCGATGGTGGTCGAGGTAACCACCCGTACCAAGGGTCGGCTA-
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
* * * *
189877 GTGCCGATGGTGCTCAAGGCAACCACCCGCACCAAGGCCCGG-TAC
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
* ** * * *** *
189922 GTGCCGATGGTGTTCGAGGCAA-CAGCCCACACCAGGGGTTATCTTC
1 GTGCCGATGGTGGTCGAGGCAACCA-CCCGTACCAAGGCTCGGCTAC
* * * *
189968 -TGTCGATGGTGGTTGAGGCAACCACCCGTACCATGGCTTGGC-AC
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
* * * *
190012 ATGCCGATGGTGTTCGAGGCAACCGCCCGTACTAAGGC-CTGGC-AC
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTC-GGCTAC
* * * * * * ** *
190057 ATGCCAATGGTGTTCGAGGTAACCGCCCATACCAGAGGC-CATCT-T
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCA-AGGCTCGGCTAC
* * * * ** * ** * *
190102 TTACCGATGATGGTCGAGGTAACTGCTCACACCAAGGCCCCGC-AC
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
* * ** * * *
190147 GTGTCGATGCGT--TCGATGCAACTGCCCGCACCAGGGGC-CCGC-AC
1 GTGCCGATG-GTGGTCGAGGCAACCACCCGTACCA-AGGCTCGGCTAC
* * * **
190191 GTGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGG-TTG
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
* * ** *
190236 GTGTCGATGGTGCTCGAGGCAA-CAGCCCACACCAAGGCCCGGC-AC
1 GTGCCGATGGTGGTCGAGGCAACCA-CCCGTACCAAGGCTCGGCTAC
* * * * **
190281 ATACCGATGGTGTTCGAGGCAACCGCCCACACCAAGGCT
1 GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCT
190320 TGGTATGTTT
Statistics
Matches: 342, Mismatches: 82, Indels: 38
0.74 0.18 0.08
Matches are distributed among these distances:
43 2 0.01
44 44 0.13
45 285 0.83
46 11 0.03
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (46 bp):
GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCTCGGCTAC
Found at i:189975 original size:90 final size:90
Alignment explanation
Indices: 189631--190039 Score: 295
Period size: 90 Copynumber: 4.5 Consensus size: 90
189621 CGAGGCATGT
* * ** *
189631 GCCCACACCAAGGCCCGGCATGTGCCGATGGTGTTCGACACAACCGCCCACACCAGGGGCCATCT
1 GCCCGCACCAAGGCCCGGTATGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGCCATCT
* * *
189696 TCTACCGATGGTGGTCGAGGCAAGA
66 TCTGCCGATGGTGGTCAAGGCAACA
* * * * * * * ** *
189721 GCCCGCACCAAGGGCAGGCT-TGTCCCGATAGTGCTCGAGGCAACTGGCCGTACCAGAGGCCATC
1 GCCCGCACCAAGGCCCGG-TATGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGCCATC
* * * *
189785 TTCTGCCAATGGTGGTAAAGGTAATA
65 TTCTGCCGATGGTGGTCAAGGCAACA
* * ** * * ** * * **
189811 GCCTGCACTAAGGCCTAGTATGTGCCGATGGTGGTCGAGGTAACCA-CCCGTACCAAGGGTCGGC
1 GCCCGCACCAAGGCCCGGTATGTGCCGATGGTGTTCGAGGCAA-CAGCCCACACCAGGGGCCATC
** *
189875 TAGTGCCGATGGTGCTCAAGGCAACCA
65 TTCTGCCGATGGTGGTCAAGGCAA-CA
* **
189902 -CCCGCACCAAGGCCCGGTACGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGTTATCT
1 GCCCGCACCAAGGCCCGGTATGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGCCATCT
* **
189966 TCTGTCGATGGTGGTTGAGGCAACCA
66 TCTGCCGATGGTGGTCAAGGCAA-CA
* * ** * ** *
189992 -CCCGTACCATGGCTTGGCACATGCCGATGGTGTTCGAGGCAACCGCCC
1 GCCCGCACCAAGGCCCGGTATGTGCCGATGGTGTTCGAGGCAACAGCCC
190040 GTACTAAGGC
Statistics
Matches: 245, Mismatches: 69, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
89 3 0.01
90 240 0.98
91 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (90 bp):
GCCCGCACCAAGGCCCGGTATGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGCCATCT
TCTGCCGATGGTGGTCAAGGCAACA
Found at i:189975 original size:135 final size:135
Alignment explanation
Indices: 189835--190124 Score: 339
Period size: 135 Copynumber: 2.1 Consensus size: 135
189825 CTAGTATGTG
* *
189835 CCGATGGTGGTCGAGGTAACCACCCGTACCAAGGGTCGGCTA-GTGCCGATGGTGCTCAAGGCAA
1 CCGATGGTGGTCGAGGTAACCACCCGTACCAAGGCTCGGC-ACATGCCGATGGTGCTCAAGGCAA
* * * * **
189899 CCACCCGCACCAAGGCCCGGTACGTGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGTTAT
65 CCACCCGCACCAAGGCCCGGCACATGCCAATGGTGTTCGAGGCAACAGCCCACACCAGAGGCCAT
*
189964 CTTCTG
130 CTTCTA
* * * * * * *
189970 TCGATGGTGGTTGAGGCAACCACCCGTACCATGGCTTGGCACATGCCGATGGTGTTCGAGGCAAC
1 CCGATGGTGGTCGAGGTAACCACCCGTACCAAGGCTCGGCACATGCCGATGGTGCTCAAGGCAAC
* * * * * * *
190035 CGCCCGTACTAAGGCCTGGCACATGCCAATGGTGTTCGAGGTAACCGCCCATACCAGAGGCCATC
66 CACCCGCACCAAGGCCCGGCACATGCCAATGGTGTTCGAGGCAACAGCCCACACCAGAGGCCATC
*
190100 TTTTA
131 TTCTA
*
190105 CCGATGATGGTCGAGGTAAC
1 CCGATGGTGGTCGAGGTAAC
190125 TGCTCACACC
Statistics
Matches: 126, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
134 1 0.01
135 125 0.99
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (135 bp):
CCGATGGTGGTCGAGGTAACCACCCGTACCAAGGCTCGGCACATGCCGATGGTGCTCAAGGCAAC
CACCCGCACCAAGGCCCGGCACATGCCAATGGTGTTCGAGGCAACAGCCCACACCAGAGGCCATC
TTCTA
Found at i:190298 original size:90 final size:90
Alignment explanation
Indices: 189833--190317 Score: 302
Period size: 90 Copynumber: 5.4 Consensus size: 90
189823 GCCTAGTATG
* * ** * * *
189833 TGCCGATGGTGGTCGAGGTAACCACCCGTACCAAGGGTCGGCTAGTGCCGATGGTGCTCAAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTCGGCTCGTGTCGATGGTGCTCGAGGCA
* *
189898 ACCA-CCCGCACCAAGGCCCGGTACG
66 A-CAGCCCGCACCAAGGCCCGGCACA
* * * *** * *
189923 TGCCGATGGTGTTCGAGGCAACAGCCCACACCAGGGGTTATCTTC-TGTCGATGGTGGTTGAGGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTCGGC-TCGTGTCGATGGTGCTCGAGGC
* * **
189987 AACCA-CCCGTACCATGGCTTGGCACA
65 AA-CAGCCCGCACCAAGGCCCGGCACA
* ** * * * * * * * *
190013 TGCCGATGGTGTTCGAGGCAACCGCCCGTACTAA-GGCCTGGCACATGCCAATGGTGTTCGAGGT
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTC-GGCTCGTGTCGATGGTGCTCGAGGC
* ** ** ***
190077 AACCGCCCATACCAGAGG-CCATCTTT
65 AACAGCCCGCACCA-AGGCCCGGCACA
* * * * * ** * * *
190103 TACCGATGATGGTCGAGGTAACTGCTCACACCAAGGCCCCGCACGTGTCGATGCGT--TCGATGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTCGGCTCGTGTCGATG-GTGCTCGAGGC
* * *
190166 AACTGCCCGCACCAGGGGCCC-GCACG
65 AACAGCCCGCACCA-AGGCCCGGCACA
* ** * *
190192 TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGGTTGGTGTCGATGGTGCTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTCGGCTCGTGTCGATGGTGCTCGAGGCA
*
190257 ACAGCCCACACCAAGGCCCGGCACA
66 ACAGCCCGCACCAAGGCCCGGCACA
* *
190282 TACCGATGGTGTTCGAGGCAACCGCCCACACCAAGG
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGG
190318 CTTGGTATGT
Statistics
Matches: 290, Mismatches: 94, Indels: 22
0.71 0.23 0.05
Matches are distributed among these distances:
88 2 0.01
89 68 0.23
90 212 0.73
91 8 0.03
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGTCGGCTCGTGTCGATGGTGCTCGAGGCA
ACAGCCCGCACCAAGGCCCGGCACA
Found at i:190348 original size:224 final size:221
Alignment explanation
Indices: 189968--190527 Score: 516
Period size: 224 Copynumber: 2.5 Consensus size: 221
189958 GGTTATCTTC
* * * * * *** *
189968 TGTCGATGGTGGTTGAGGCAACCACCCGTACCATGGCTTGGCACATGCCGATGGTGTTCGAGGCA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGG-TTGTGCCGATGGTGATCGAGGCA
* * * * * * *
190033 ACCGCCCGTACTAAGGCCTGGCACATGCCAATGGTGTTCGAGGTAACCGCCCATACCAGAGGCCA
65 ACAGCCCGCACCAAGGCCCGGCACATGCCGATGGTGTTCGAGGCAACCGCCCACACCAGAGGCCA
* * *
190098 TCTTTTACCGATGATGGTCGAGGTAACTGCTCACACCAAGGCCCCGCACGTGTCGAT-GCGTTCG
130 TCTTTT--CGATGATGGTCGAGGTAACCGCCCACACCAAGGCCCAGCA-GTGTCGATGGCGTTCG
* * * *
190162 ATGCAACTGCCCGCACCAGGGGCCCGCACG
192 ATGAAACCGCCCGCACCAGGGGCCAGCACA
* *
190192 TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGGTTGGTGTCGATGGTGCTCGAGGCA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGGTT-GTGCCGATGGTGATCGAGGCA
* *
190257 ACAGCCCACACCAAGGCCCGGCACATACCGATGGTGTTCGAGGCAACCGCCCACACCA-AGGCTT
65 ACAGCCCGCACCAAGGCCCGGCACATGCCGATGGTGTTCGAGGCAACCGCCCACACCAGAGGC--
* * * * * * *
190321 GGTATGTTTT-GATGGTGGTTC-AGGTAACCGCCCGCACCATGGCCCAGCATTGTCGATGGTGTT
128 --CATCTTTTCGATGATGG-TCGAGGTAACCGCCCACACCAAGGCCCAGCAGTGTCGATGGCGTT
* * **
190384 CGATGAAACCGCCCGCACTAGGGGCCATCTTA
190 CGATGAAACCGCCCGCACCAGGGGCCAGCACA
* * * * * * * * *
190416 TGTCGATAGTGGTCGAGGTAACTGCCTGCACCAAGGGCCGGCTTGTACCAATGGTGATCGAGGTA
1 TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGG-TTGTGCCGATGGTGATCGAGGCA
* * ** * *
190481 ACTGCCCGCACCAAGGCCCAGCATGTGCCGATGGGGATCGAGGCAAC
65 ACAGCCCGCACCAAGGCCCGGCACATGCCGATGGTGTTCGAGGCAAC
190528 TGCACGTACC
Statistics
Matches: 272, Mismatches: 56, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
223 11 0.04
224 251 0.92
225 4 0.01
227 6 0.02
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (221 bp):
TGTCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGGTCGGTTGTGCCGATGGTGATCGAGGCAA
CAGCCCGCACCAAGGCCCGGCACATGCCGATGGTGTTCGAGGCAACCGCCCACACCAGAGGCCAT
CTTTTCGATGATGGTCGAGGTAACCGCCCACACCAAGGCCCAGCAGTGTCGATGGCGTTCGATGA
AACCGCCCGCACCAGGGGCCAGCACA
Found at i:190520 original size:45 final size:45
Alignment explanation
Indices: 190115--190559 Score: 211
Period size: 45 Copynumber: 9.9 Consensus size: 45
190105 CCGATGATGG
* * * * * *
190115 TCGAGGTAACTGCTCACACCAAGGCCCCGCACGTGTCGAT-GCGT
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
* * *
190159 TCGATGCAACTGCCCGCACCAGGGGCCC-GCACGTGTCGATGGTGG-
1 TCGAGGCAACTGCCCGCACCA-AGGCCCAGCATGTGTCGATGG-GGT
* * ** ** * *
190204 TCGAGGCAACCGCCCGTACCAAGGGTC-GGTTGGTGTCGATGGTGC
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCAT-GTGTCGATGGGGT
* * * ** ** *
190249 TCGAGGCAACAGCCCACACCAAGGCCCGGCACATACCGATGGTGT
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
* * *** * * *
190294 TCGAGGCAACCGCCCACACCAAGGCTTGGTATGTTTTGATGGTGGT
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGG-GGT
* * * *
190340 TC-AGGTAACCGCCCGCACCATGGCCCAGCAT-TGTCGATGGTGT
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
* * * * * * * * * *
190383 TCGATGAAACCGCCCGCACTAGGGGCCATCTTATGTCGATAGTGG-
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGAT-GGGGT
* * * * * ** * * *
190428 TCGAGGTAACTGCCTGCACCAAGGGCCGGCTTGTACCAATGGTGA
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
* * *
190473 TCGAGGTAACTGCCCGCACCAAGGCCCAGCATGTGCCGATGGGGA
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
* * * * *
190518 TCGAGGCAACTGCACGTACCAAAGCCTAGCTTGTGTCGATGG
1 TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGG
190560 CAATTGAGGT
Statistics
Matches: 305, Mismatches: 85, Indels: 21
0.74 0.21 0.05
Matches are distributed among these distances:
43 4 0.01
44 65 0.21
45 228 0.75
46 8 0.03
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGTCGATGGGGT
Found at i:191554 original size:26 final size:26
Alignment explanation
Indices: 191518--191570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
191508 GTTGACTTAG
* *
191518 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
*
191544 GCATACGGAGTGCATTTCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
191570 G
1 G
191571 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:191716 original size:197 final size:197
Alignment explanation
Indices: 191347--191742 Score: 501
Period size: 197 Copynumber: 2.0 Consensus size: 197
191337 GTTGACTTAG
* * * * * * *
191347 GCATACGTAGTGCACTACCAGTCTAAGATCGGACCAGATTAAGGGTTGCGATAGCAGGACCCGCA
1 GCATACGGAGTGCACTACCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCAGAACCAGCA
* * * * *
191412 GTAGGATCGACAGCATGCAGAGAGAGACCAGGCCGATCCCTGGCTTGCGCATCCTGCCTCTCTGG
66 GTAGGATCGACAGCAGGCAGAGAGAGACCAGGCCGATCCCTGACTTGCACATCCTACCTCTCCGG
* * *
191477 CCGGTTGAGCACCCGCACGCTCGTTTTGTTGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTC
131 CCGGATGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTC
191541 TAA
195 TAA
* * * * *
191544 GCATACGGAGTGCATTTCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGAACTAGCA
1 GCATACGGAGTGCACTACCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCAGAACCAGCA
* * * *
191609 GTAGGATCGACAGCAGGCAGA-AGGGGACCGGGTCGAT-CCTCGACTTGCACATTCTACCTCTCC
66 GTAGGATCGACAGCAGGCAGAGA-GAGACCAGGCCGATCCCT-GACTTGCACATCCTACCTCTCC
* * *
191672 GGCCGGATGAGCGCTCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
129 GGCCGGATGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
191737 CTAA
194 CTAA
191741 GC
1 GC
191743 CCTAGTCAGA
Statistics
Matches: 169, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
196 7 0.04
197 162 0.96
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (197 bp):
GCATACGGAGTGCACTACCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCAGAACCAGCA
GTAGGATCGACAGCAGGCAGAGAGAGACCAGGCCGATCCCTGACTTGCACATCCTACCTCTCCGG
CCGGATGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
AA
Found at i:191912 original size:26 final size:26
Alignment explanation
Indices: 191874--191926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
191864 GTTGACTTAG
191874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
191900 GCATACGGTGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
191926 G
1 G
191927 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:199578 original size:45 final size:45
Alignment explanation
Indices: 199494--199580 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
199484 ATGTGCGTAC
* **
199494 ACCAAGGCTCAGCATGTGTAGATGGTGTTCGAGGCAACCGCCGGT
1 ACCAAGGCTCAGCATGTGCAGATGGTGTTCGACACAACCGCCGGT
* *
199539 ACCAAGGC-CTAGCATGTGCCGATGGTGTTCGACATAACCGCC
1 ACCAAGGCTC-AGCATGTGCAGATGGTGTTCGACACAACCGCC
199581 TACACCAGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (45 bp):
ACCAAGGCTCAGCATGTGCAGATGGTGTTCGACACAACCGCCGGT
Found at i:199788 original size:45 final size:45
Alignment explanation
Indices: 199514--200202 Score: 293
Period size: 45 Copynumber: 15.3 Consensus size: 45
199504 AGCATGTGTA
* * * * * * *
199514 GATGGTGTTCGAGGCAACCGCCGGTACCA-AGGCCTAGCATGTGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCC-ATCTTCTACC
* *** ** *
199559 GATGGTGTTCGACATAACCGCCTACACCAG-GGACCATCTTCTATC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGG-CCATCTTCTACC
* ** * **
199604 GATAGTGGTCGAGGCAAGAGCCCGCACCA-AGAGCCGA-CTTGTTTC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAG-GCC-ATCTTCTACC
* * * * **
199649 GATGGTGCTCGAGGCAACAGCTCGCACCAG-GGACCATCTTTTGTC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGG-CCATCTTCTACC
* * * * * * * *
199694 GATAGTGGTTGAGGCAACCGCTCGTACTAGGGGCCAGC--ATACGC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTAC-C
* * *
199738 TGATGGTGTTCAATGCAACCGCCCGCACCAGAGGCCATCTTCTACC
1 -GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
* ** * * * * *
199784 GATGGTGGTTGAGGCAAGAGCCCGCACTA-AGGGTCAGCTTGTGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGA-GGCCATCTTCTACC
* * *
199829 AATGGTGGTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
* ** * * *
199874 GATGGTGGTCGAGGCAACCGTCCATACCAGGGGCCATTTTCTATC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
* ** * * * * *** * **
199919 GATGGTGGTCGAGGTAAGAGCCTGTACTAGGGGCTGGCTTGTGTC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
* * * * *
199964 GATGGTGCTCGAGGTAACAGCCCACACTA-AGGGCCATCTTCTACC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGA-GGCCATCTTCTACC
* ** * * * * *
200009 TATGGTGGTCGAGGCAACCGCCTACACCA-AGACCCAGCATGTGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAG-GCCATCTTCTACC
* * * * * * * * *
200054 TATGGTGTTCGACGTAACCGCCAGTACCAGGGGCCATCTTATGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
* * * * * *
200099 AATGGTGGTCGAGGCAACCGCCTGCACCA-AGGGTCAGCTTGTACT
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGA-GGCCATCTTCTACC
* * * * * *
200144 GGTGGTGGTTGAGACAATCGCCCGTACCAGGGGCCATCTTCTACC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
200189 GATGGTGGTCGAGG
1 GATGGTGGTCGAGG
200203 TAGGAGCCCG
Statistics
Matches: 472, Mismatches: 152, Indels: 40
0.71 0.23 0.06
Matches are distributed among these distances:
43 1 0.00
44 5 0.01
45 455 0.96
46 8 0.02
47 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCGCCCGCACCAGAGGCCATCTTCTACC
Found at i:199878 original size:135 final size:135
Alignment explanation
Indices: 199752--200257 Score: 419
Period size: 135 Copynumber: 3.7 Consensus size: 135
199742 GGTGTTCAAT
* * * *
199752 GCAACCGCCCGCACCAGAGGCCATCTTCTACCGATGGTGGTTGAGGCAAGAGCCCGCACTAAGGG
1 GCAACCGCCCACACCAGAGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGG
*
199817 TCAGCTTGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGATGGTGG
66 TCAGCTTGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGG
199882 TCGAG
131 TCGAG
* * * * * * * *
199887 GCAACCGTCCATACCAGGGGCCATTTTCTATCGATGGTGGTCGAGGTAAGAGCCTGTA-CTAGGG
1 GCAACCGCCCACACCAGAGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGG
* * * * * * * * *
199951 GCTGGCTTGTGTCGATGGTGCTCGAGGTAA-CAGCCCACACTAAGGGCCATCTTCTACCTATGGT
66 TC-AGCTTGTGCCAATGGTGGTCGAGGCAACCA-CCCGCACCAAGGGCCATCTTCTACCGATGGT
200015 GGTCGAG
129 GGTCGAG
* * * * * * * * * ** * * *
200022 GCAACCGCCTACACCA-AGACCCAGCATGTGCCTATGGTGTTCGACGTAACCGCCAGTACCAGGG
1 GCAACCGCCCACACCAGAG-GCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGG
* * * * * * * * * *
200086 GCCATCTTATGCCAATGGTGGTCGAGGCAACCGCCTGCACCAAGGGTCAGCTTGTACTGGTGGTG
65 GTCAGCTTGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTG
*
200151 GTTGAG
130 GTCGAG
* * ** * *
200157 ACAATCGCCCGTACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAGGAGCCCGCACCAAGGG
1 GCAACCGCCCACACCAGAGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGG
* * * *
200222 TTGAG-TTGTACCGATGGTGGTC-ATGGCAACCGCCCG
66 -TCAGCTTGTGCCAATGGTGGTCGA-GGCAACCACCCG
200258 TAGAGTGTGC
Statistics
Matches: 276, Mismatches: 87, Indels: 16
0.73 0.23 0.04
Matches are distributed among these distances:
134 9 0.03
135 259 0.94
136 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (135 bp):
GCAACCGCCCACACCAGAGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGG
TCAGCTTGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCATCTTCTACCGATGGTGG
TCGAG
Found at i:199908 original size:180 final size:179
Alignment explanation
Indices: 199514--199909 Score: 435
Period size: 180 Copynumber: 2.2 Consensus size: 179
199504 AGCATGTGTA
* * **
199514 GATGGTGTTCGAGGCAACCGCCGGTACCA-AGGCCTAGCATGTGCCGATGGTGTTCGACATAACC
1 GATGGTGGTCGAGGCAACCGCC-GTACCAGGGGCC-AGCATACGCCGATGGTGTTCGACATAACC
* * *
199578 GCCTACACCAGGGACCATCTTCTATCGATAGTGGTCGAGGCAAGAGCCCGCACCAAGAGCCGACT
64 GCCCACACCAGGGACCATCTTCTACCGATAGTGGTCGAGGCAAGAGCCCGCACCAAGAGCAGACT
** * * * **
199643 TGTTTCGATGGTGCTCGAGGCAACAGCTCGCACCAGGGACCATCTTTTGTC
129 TGTGCCAATGGTGCTCGAGGCAACAGCCCGCACCAGGGACCATCTTCTACC
* * * *
199694 GATAGTGGTTGAGGCAACCGCTCGTACTAGGGGCCAGCATACGCTGATGGTGTTC-A-ATGCAAC
1 GATGGTGGTCGAGGCAACCGC-CGTACCAGGGGCCAGCATACGCCGATGGTGTTCGACAT--AAC
* * * * *
199757 CGCCCGCACCAGAGG-CCATCTTCTACCGATGGTGGTTGAGGCAAGAGCCCGCACTAAGGGTCAG
63 CGCCCACACCAG-GGACCATCTTCTACCGATAGTGGTCGAGGCAAGAGCCCGCACCAAGAG-CAG
* *
199821 -CTTGTGCCAATGGTGGTCGAGGCAACCA-CCCGCACCAGGGGCCATCTTCTACC
126 ACTTGTGCCAATGGTGCTCGAGGCAA-CAGCCCGCACCAGGGACCATCTTCTACC
*
199874 GATGGTGGTCGAGGCAACCGTCCATACCAGGGGCCA
1 GATGGTGGTCGAGGCAACCG-CCGTACCAGGGGCCA
199910 TTTTCTATCG
Statistics
Matches: 179, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
178 2 0.01
179 1 0.01
180 164 0.92
181 12 0.07
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (179 bp):
GATGGTGGTCGAGGCAACCGCCGTACCAGGGGCCAGCATACGCCGATGGTGTTCGACATAACCGC
CCACACCAGGGACCATCTTCTACCGATAGTGGTCGAGGCAAGAGCCCGCACCAAGAGCAGACTTG
TGCCAATGGTGCTCGAGGCAACAGCCCGCACCAGGGACCATCTTCTACC
Found at i:200212 original size:45 final size:45
Alignment explanation
Indices: 199583--200217 Score: 344
Period size: 45 Copynumber: 14.1 Consensus size: 45
199573 TAACCGCCTA
* * * *
199583 CACCAGGGACCATCTTCTATCGATAGTGGTCGAGGCAAGAGCCCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * ** * *
199628 CACCAAGAGCCGA-CTTGTTTCGATGGTGCTCGAGGCAACAGCTCG
1 CACCAGGGGCC-ATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * ** * * * *
199673 CACCAGGGACCATCTTTTGTCGATAGTGGTTGAGGCAACCGCTCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * * * * *
199718 TACTAGGGGCCAGC--ATACGCTGATGGTGTTCAATGCAACCGCCCG
1 CACCAGGGGCCATCTTCTAC-C-GATGGTGGTCGAGGCAACAGCCCG
* * *
199763 CACCAGAGGCCATCTTCTACCGATGGTGGTTGAGGCAAGAGCCCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * * * *
199808 CACTAAGGGTCAGCTTGTGCCAATGGTGGTCGAGGCAACCA-CCCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAA-CAGCCCG
* * *
199853 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGTCCA
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * * *
199898 TACCAGGGGCCATTTTCTATCGATGGTGGTCGAGGTAAGAGCCTG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * *** * ** * * *
199943 TACTAGGGGCTGGCTTGTGTCGATGGTGCTCGAGGTAACAGCCCA
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * **
199988 CACTAAGGGCCATCTTCTACCTATGGTGGTCGAGGCAACCGCCTA
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* ** * * * * * * * * * *
200033 CACCAAGACCCAGCATGTGCCTATGGTGTTCGACGTAACCGCCAG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * * *
200078 TACCAGGGGCCATCTTATGCCAATGGTGGTCGAGGCAACCGCCTG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
* * * * * * * *
200123 CACCAAGGGTCAGCTTGTACTGGTGGTGGTTGAGACAATC-GCCCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAA-CAGCCCG
* * **
200168 TACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAGGAGCCCG
1 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
200213 CACCA
1 CACCA
200218 AGGGTTGAGT
Statistics
Matches: 436, Mismatches: 144, Indels: 20
0.73 0.24 0.03
Matches are distributed among these distances:
43 1 0.00
44 3 0.01
45 425 0.97
46 4 0.01
47 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.20
Consensus pattern (45 bp):
CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCG
Found at i:208983 original size:45 final size:45
Alignment explanation
Indices: 208928--213231 Score: 1341
Period size: 45 Copynumber: 95.9 Consensus size: 45
208918 CGAGGCATGT
* * *
208928 GCCCACACCAAGGCCCAACATGTGCCTATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
208973 ACCCGTACCAAGGCCTAGCAT-TGCCGATGGTGTTCGATGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * **
209017 GCCCACACCAAGGGCCATCTTCTGTCGATGGTG-TCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
209061 TCCTGTACCAAGGGCCAACTTATGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
209106 GTCCACACCAAGGCCTAGCACGTGCCAATAGTGTTCGAGGCAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * *
209151 GCTCGCACCAAGGCCCAGCATGTGCCGATGGCATTCGACGTAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
209196 ACCTGCACCAAGGGCCATCTTGTACCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** ** * ** *
209241 GCCTACACCAAGGGTC-GACTTGTGCAAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
** ** * * * *
209286 GCCTTCACCAAGGGTC-G-ATTTATGCTGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCA--TGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
209331 GCCCACACCAGAGG-CCATCTTCTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
209376 GCTCGCACCAGAGG-CCATCTTCTGTCGATGGTGCTCGAGGCAACA
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * *
209421 GCTCTCACCAGGGGCCATCTTCTGTCGATAGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
209466 GCCCGCACCAAAGCCCAGCATGTGCCGATGGCT-TTCGATGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGG-TGTTCGAGGCAACC
* * * * * * * * * * *
209511 GCACTCACCAAGGGCCATCTTATACCGATAGTGGTCGAGACAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * ** *
209556 GCCCGTACCAAGGGTCGGCTTATGCAAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * * * * ***
209601 GTCCATACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGTAGGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
209646 GCCCGCACCAAGGGCC-GACTTGTGCCAATGGTGCTGGAGGCAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * *
209691 ACCCGCACCAGGGGCCATCTTTTACCGATGATGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * ** *
209736 ACCTGCACCAAGGCCTAGCACATGCCGATGGTGTTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * *
209781 ATCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
209826 GCCTGTACCAAGGCCCAGCATATGCCGATGGTGTTCAACGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
209871 GCCCGTA-CAAGGGGCCATCTTGTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAA-GGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* *** * * *
209916 GCCCGTACCAAGG-GTTGACTTATGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * ** * * **
209961 GCCCACCCCAGGGGCCATCTTCTATCGATGGTGGTCGAGGTAAAA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * *
210006 GCCTGCATCGAGCGTCGA-CTTATGCCGATGGTGCTT-AAGGCAACT
1 GCCCGCACCAAG-GCCCAGCATGTGCCGATGGTG-TTCGAGGCAACC
* * * * * * * *
210051 GCCCGCACTAGAGG-CCATCTTCTTCCGATGATGGTCGAGGCAATC
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * *
210096 GCCCGTACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGTAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * * * *
210141 GTTCG-----A--CCCAGTATATGCCAATAGTGGTT-GAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACC
* * * *
210179 GCCAGTACCAAGGCCCAGCATGTACCGATGGTGTTCGACGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
210224 GTCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * * **
210269 GCCGGCACC-AGGAGCCATCTTCTGTCGATAGAGGTCGAGGTAAGA
1 GCCCGCACCAAGG-CCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * * *
210314 GCATGCACCAAGGGCTAGCTTGTGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * ** *
210359 GCCCTCACCAGGGGCCATCTTCTATC-AGTGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGA-TGGTGTTCGAGGCAACC
* ** * * * * *
210404 ACCCGTGCCATGAG-CCATCATGTGTCGATGGTGTTCAATGCAACC
1 GCCCGCACCAAG-GCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * * * **
210449 ACCCATACCAAGGGCCATCTTCTACTGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
210494 GCCCGCACCAAGG-GCTGACTTATGCCGATGGTGCTCGAAGCAACA
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * ** * *
210539 GCCCGTACCAGGGGCCATCTTCTATCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * *
210584 ACTCGTACCAGAAG-CCAGCATGTGCCAATGCTGTTCGATGTAACT
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * * * * * * **
210629 GCCCATACTAGGGGCTATCTTCTGTCGATGGTGGTCGAGGTAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
210674 GCCCGTACCAAGAG-CCGGCTTGTGCTGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAG-GCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
210719 GCCCGTACCAAGGCCTAGCACGTGCCGATGGTGTTTGAGGTAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
210764 ACCCACACCAAGGGCCAACATGTGTCGATGGCGTTCGATG-TACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
210808 AGCTCGCACCAGGGGCCATCTTGTGCCAATGGTGGTCGAGACAACC
1 -GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** ** * * *
210854 GCCTACACCAAGGGTC-GACTTGTGCAGATGGTGGTT-GAGGTAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGT-GTTCGAGGCAACC
* * * * * * *
210899 GCCCGCACCAGAGG-CCATCTTCTACCGGTAGTGCTT-GAGGTAACC
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTG-TTCGAGGCAACC
* * * * * * * * *
210944 GTCCGTA-CTAGGAGCCAGCATGTGTCAATGGTGTTCGACGTAATC
1 GCCCGCACCAAGG-CCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * **
210989 GACCGCACCAGGGGCCATCTTCTACCGATGGTGGTCAAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * **
211034 GCCCACACCAAAGGTCGA-CTTGTGTCGATGGTGCTCAAGGCAATA
1 GCCCGCACC-AAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * ** * *
211079 GCCCACACCAGGGGCCATCTTTTATCGATGGTGGTCGAAGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * *
211124 GTCTACACC-AGGAGCCAGCATGTGCTGATGCTATTCGACGTAACC
1 GCCCGCACCAAGG-CCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * ** * **
211169 GCTCGCACTATGGGCCATCTTCTATCGATGGTGGTT-AAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACC
** * * * *
211214 GCCCGCACCAAGGGTCAGCTTGTGCTGGTGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
211259 GCCCGTACCAAAGCCTAGCACGTGCCGATGGTGTTTGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
211304 GTCCGTACCAAGGCCCAGCATATGCCAATGGCGTTCGATGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
211349 GCCCGTACCAGGGGCCATCTTGTGCCAATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * ** *
211394 GCCTGCACCAAAGG-TCAACTTGTACAGATGGTGGTCGAGGTGATC
1 GCCCGCACC-AAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * *** * * * *
211439 GCTTGTACCAAGG-GTTGACTTATGCCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * **
211484 GCCCGCTCC-AGGAGCCATCTTCTGTCGATGGTAG-TCGAGGCAAGA
1 GCCCGCACCAAGG-CCCAGCATGTGCCGATGGT-GTTCGAGGCAACC
* ** * ** * * * *
211529 GCTCATATCAAGATCCGGCTTGTGCTGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
211574 GTCCGCACCAAAGCCTACCACGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
211619 ACCCGCACCAAGACCCAGCATGTGTCGATGGCGTTCGATGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
211664 GCCCGTACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * ** * *
211709 GCTTGTACCAAGGGTCAGCTTGTGCAGATGGTGGTT-GAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACC
* ** ** * ** * *
211754 GCCCGTACCAAGGGTCAGTTTGGGTTGATGGTGGTCTAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * **
211799 GCCCACACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * *
211844 GCCCGCACCAAAGG-CCGGCTTGTGCCAATGGTGCTCGAGGCAACC
1 GCCCGCACC-AAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** *
211889 GCCCGCACCAAGGCCCAACGCGTACCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
211934 GTCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAAGCAGCC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
211979 GCCCGTACCAAAGG-TCTGCTTGTGTCGATGGTGGTCGAGGCAACT
1 GCCCGCACC-AAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * * * ***
212024 GTCCACACCAGGGGCCATCTTCTGCTGCTGGTGGTCGAGGCAGGA
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * *
212069 GCCTGCACCAAGGGCCAGCTTGTGCCGATGGTGCTT-GAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTG-TTCGAGGCAACC
* * * * * * * * * *
212114 GTCCGCACCAGGGGCCATCTTTTGCAGATGATGGTCAAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
212159 ACCCGTACCAAGGCTCAGCACGTGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
212204 GTCCGCACCAAGGCTCAGTATGTACCAATGGTGGTCAAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
212249 ACCCGCACCAAGGCCCAGCATGTGTCAATGGTGTTTGACGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * *** * * *
212294 GCCTGCACCAGGGGCCATTTTGTGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * *
212339 ACCCGCACCAAGGGTCAACTTATGTCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
212384 GCCCGCACCAGGGGCCATCTTTTACCGATGATGGTT-GAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACC
* * ** * * *
212429 GTCCGTACCAAATCCCAGCACGTGTCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * *
212474 GTCCTTACCACGACCCAGCATGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
212519 ACCCGTACCAAGGCCCAGCATGTGTCGATGGTGTTTGATGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
212564 GCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGTAATC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
*** * ** * * ***
212609 GCCCGCACCAGAGG--CAATTTCTATCGATGGTGGTGGAGGCAGGA
1 GCCCGCACCA-AGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * *
212653 GCCCGCACCAAGGGCTGGCTTGTGCCGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** *
212698 GCCCGCACCAAAGCCCATAATGTGTCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
212743 GTCTGCACCAAGGCCTAGCATATGCTGATGGTGGTCGAGGTAACT
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
212788 GCCGGTACCAAGGCCCAACATGTGTCGATGGTGTTCGATGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
212833 GACCGTACC-AGGAGCCATCTTGTGCCTATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGG-CCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * ** *
212878 GCCCGCACCAAGGCTCGGCACGTATCGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * *
212923 ACCTACACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * ** * *
212968 ACCCGTACCAAGGGTCAG-TTGGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCAT-GTGCCGATGGTGTTCGAGGCAACC
* * * ** * * *
213013 GTCCGCACCACGGCCCAACATGTTTCGATGATGTTCAATGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * * * * *
213058 GCCTACACCAGGGGCCATCTTGTGCCGATGGTGATCGAGGCAAGC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
213103 GCCCGTAACAAAGGCCGA-CTTGTGCCGATGGTGGTCGAGGTAACT
1 GCCCG-CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
213148 GCCCGCACCAAGGCCTAGCATGTGCCGATGGTGATCGAAG-AACC
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
213192 TCCCGTACCAGGGCCCAGCTTGTGTCGATGGCGATCGAGG
1 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGG
213232 TAAGTGCCCG
Statistics
Matches: 3123, Mismatches: 1049, Indels: 175
0.72 0.24 0.04
Matches are distributed among these distances:
38 24 0.01
39 3 0.00
40 1 0.00
43 7 0.00
44 206 0.07
45 2810 0.90
46 72 0.02
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (45 bp):
GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
Found at i:211934 original size:270 final size:269
Alignment explanation
Indices: 208928--213160 Score: 1558
Period size: 270 Copynumber: 15.7 Consensus size: 269
208918 CGAGGCATGT
* * * * ** * *
208928 GCCCACACCAAGGCCCAACATGTGCCTATGGTGTTCGAGGCAACCACCCGTACCAAGGCCTAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACC-AGGCCCAGCA
* * * * ** * * * * *
208993 T-TGCCGATGGTGTTCGATGTAACCGCCCACACCAAGGGCCATCTTCTGTCGATGGT-GTCGAGG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGG
*** * * * * * * * * *
209056 CAAGATCCTGTACCAAGGGCCAACTTATGCCGATGGTGCTCGAGGCAACCGTCCACACCAA-GGC
130 CAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
* * * * * * * * * *
209120 CTAGC-ACGTGCCAATAGTGTTCGAGGCAATC-GCTCGCACCAAGGCCCAGCATGTGCCGATGGC
195 C-ATCTTC-TACCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGT
** * * *
209183 ATTCGACGTAATC
257 GCTCGAGGCAACC
* * * * ** * * * * **
209196 ACCTGCACCAAGGGCCATCTTGTACCGATGGTGGTCAAGGCAACCG-CCTACACCAAGGGTC-GA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCC-GCACC-AGGCCCAG-
* ** * * ** * *
209259 CTTGTGCAAATGGTGGTCGAGGCAACC-GCCTTCACCAAGGGTC-G-ATTTATGCTGATGGTGGT
63 CATGTGCCGATGGTGGTCGAGGCAACCACCCGT-ACCAAGGCCCAGCATGTGT-C-GATGGTGGT
* * * * * ** *
209321 CGAGGTAACCGCCCACACCAGAGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCTCGCACC-
125 TGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCA
** * * * * * * *
209385 AGAGGCCATCTTCTGTCGATGGTGCTCGAGGCAACAGCTCTCACCAGGGGCCATCTTCTGTCGAT
190 AG-GGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGAT
* *
209450 AGTGGTCGAGGCAACC
254 GGTGCTCGAGGCAACC
* * * * * * *
209466 GCCCGCACCAAAGCCCAGCATGTGCCGATGGCT-TTCGATGTAACCG-CACTCACCAAGGGCCAT
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGG-TGTTCGAGGCAACCGTC-CGCACC-AGGCCCAG
* * * * * * * ** * * * * *
209529 CTTATACCGATAGTGGTCGAGACAATCGCCCGTACCAAGGGTCGGCTTATG-CAAATGGTGGTCG
63 CATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTC-GATGGTGGTTG
* ** * * ***
209593 AGGCAACCGTCCATACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGTAGGAGCCCGCACCAAG
127 AGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAG
* * * * * * * * *
209658 GGCCGA-CTTGTGCCAATGGTGCTGGAGGCAACCA-CCCGCACCAGGGGCCATCTTTTACCGATG
192 GGCC-ATCTTCTACCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGCCGATG
* *
209721 ATGGTCGAGGCAACC
255 GTGCTCGAGGCAACC
* * * * **
209736 ACCTGCACCAAGGCCTAGCACATGCCGATGGTGTTCGAGGCAACTATCCGCACCAAGGCCCAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACC-AGGCCCAGCA
* * * * * * * *
209801 TGTGTCGATGGTGGTCGAGGTAACCGCCTGTACCAAGGCCCAGCATATGCCGATGGT-GTTCAAC
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTT-GAG
* * * ** *
209865 GTAACCGCCCGTACAAGGGGCCATCTTGTACCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGG
129 GCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
** * * * * * * * * **
209930 TTGA-CTTATGCCGATGGTGGTCGAGGCAACCGCCCACCCCAGGGGCCATCTTCTATCGATGGTG
194 -CCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTG
* * **
209994 GTCGAGGTAAAA
258 CTCGAGGCAACC
* * * * * *** * * * * * *
210006 GCCTGCATCGAGCGTCGA-CTTATGCCGATGGTGCTT-AAGGCAACTGCCCGCACTAGAGGCCAT
1 GCCCGCACCAAG-GCCCAGCACGTGCCGATGGTG-TTCGAGGCAACCGTCCGCACCAG-GCCCAG
* * * * * * * *
210069 CTTCTTCCGATGATGGTCGAGGCAATCGCCCGTACCAAGGCCCAGCACGTGCCGATGGT-GTTCG
63 CATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTT-G
* * ** * * * * * * * * *
210133 AGGTAATCGTTCG-A-C-----CCAGT-ATATGCCAATAGTGGTTGAGGTAACCGCCAGTACCAA
127 AGGCAACCGCCCGCACCAGGGGCCA-TCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * * * * * *
210190 GGCCCAGCATGTACCGATGGTGTTCGACGCAACCGTCCGCACCAAGGGCCATCTTGTGCCGATGG
191 GGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGG
* *
210255 TGGTCGAGGTAACC
256 TGCTCGAGGCAACC
* * * * * * * * * ** * * *
210269 GCCGGCACC-AGGAGCCATCTTC-TGTCGATAGAGGTCGAGGTAAGAG-CATGCACCAAGGGCTA
1 GCCCGCACCAAGG-CCCAGC-ACGTGCCGATGGTGTTCGAGGCAACCGTC-CGCACC-AGGCCCA
* * * * * * * * *
210331 GCTTGTGCCGATGGTGCTCGAGGCAACCGCCC-TCACCAGGGGCCATCTTCTATC-AGTGGTGGT
62 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGT-ACCAAGGCCCAGCATGTGTCGA-TGGTGGT
* * ** * * * * * * * **
210394 CGAGGCAACCACCCGTGCCATGAGCCATCATGTGTCGATGGTGTTCAATGCAACCACCCATACCA
125 TGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCA
* * * *
210459 AGGGCCATCTTCTACTGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGG-CTGACTTATGCCGAT
190 AGGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAG-CTTGTGCCGAT
* *
210523 GGTGCTCGAAGCAACA
254 GGTGCTCGAGGCAACC
* * * * * ** * * * *
210539 GCCCGTACCAGGGGCCATCTTC-TATCGATGGTGGTCGAGGTAACC-ACTCGTACCAGAAG-CCA
1 GCCCGCACCAAGGCCCAGC-ACGTGCCGATGGTGTTCGAGGCAACCGTC-CGCACCAG--GCCCA
* * * * * ** * * * * * * * * *
210601 GCATGTGCCAATGCTGTTCGATGTAACTGCCCATACTAGGGGCTATCTTCTGTCGATGGTGGTCG
62 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTG
* ** * * * ** * *
210666 AGGTAAGAGCCCGTACCAAGAGCCGGCTTGTG-CTGATGGTGCTCGAGGCAACCGCCCGTACCAA
127 AGGCAACCGCCCGCACCAGGGGCCATCTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * * * * * * *
210730 -GGCCTAGC-ACGTGCCGATGGTGTTTGAGGTAATCA-CCCACACCAAGGGCCAACATGTGTCGA
191 GGGCC-ATCTTC-TACCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * *
210792 TGGCGTTCGATG-TACC
253 TGGTGCTCGAGGCAACC
* * * * ** * * * * **
210808 AGCTCGCACCAGGGGCCATCTTGTGCCAATGGTGGTCGAGACAACCG-CCTACACCAAGGGTC-G
1 -GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCC-GCACC-AGGCCCAG
* * * * * * * * * ** * * *
210871 ACTTGTGCAGATGGTGGTTGAGGTAACCGCCCGCACCAGAGG-CCATCTTCTACCGGTAGTGCTT
63 -CATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCA-AGGCCCAGCATGTGTCGATGGTGGTT
* * * * * * * * * * * * * *
210935 GAGGTAACCGTCCGTACTAGGAGCCAGCATGTGTCAATGGTGTTCGACGTAATCGACCGCACCAG
126 GAGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * * *
211000 GGGCCATCTTCTACCGATGGTGGTCAAGGCAAGAGCCCACACCAAAGGTC-GACTTGTGTCGATG
191 GGGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAG-CTTGTGCCGATG
* **
211064 GTGCTCAAGGCAATA
255 GTGCTCGAGGCAACC
* * * * *** ** * * ** *
211079 GCCCACACCAGGGGCCATCTTTTATCGATGGTGGTCGAAGCAACCGTCTACACCAGGAGCCAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGG-CCCAGCA
* * ** * * * * * * * * * * * * *
211144 TGTGCTGATGCTATTCGACGTAACCGCTCGCACTATGGGCCATCTTCTATCGATGGTGGTTAAGG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGG
** * * * * * * *
211209 CAAGAGCCCGCACCAAGGGTCAGCTTGTG-CTGGTGGTGCTCGAGGCAACCGCCCGTACCAA-AG
130 CAACCGCCCGCACCAGGGGCCATCTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
* * * * * * * * * * * * *
211272 CCTAGC-ACGTGCCGATGGTGTTTGAGGCAACCGTCCGTACCAAGGCCCAGCATATGCCAATGGC
194 CC-ATCTTC-TACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGT
* * *
211336 GTTCGATGTAACC
257 GCTCGAGGCAACC
* * * * ** * * * * *
211349 GCCCGTACCAGGGGCCATCTTGTGCCAATGGTGGTCGAGGTAACCG-CCTGCACCAAAGG-TCAA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCC-GCACC--AGGCCCAG
* * * ** * * ** *** * * * *
211412 CTTGTACAGATGGTGGTCGAGGTGATCGCTTGTACCAAGG-GTTGACTTATGCCGATGGTGGTCG
63 CATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAG-CATGTGTCGATGGTGGTTG
* * * * * ** * ** *
211476 AGGTAACCGCCCGCTCCAGGAGCCATCTTCTGTCGATGGTAGTCGAGGCAAGAGCTCATATCAAG
127 AGGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAG
** ** * * * * * * * * **
211541 ATCCGGCTTGTGCTGATGGTGCTCGAGGCAACCGTCCGCACCAA-AGCCTACCACGTGCCGATGG
192 GGCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-AGCTTGTGCCGATGG
*
211605 TGTTCGAGGCAACC
256 TGCTCGAGGCAACC
* * * * * * * * * * *
211619 ACCCGCACCAAGACCCAGCATGTGTCGATGGCGTTCGATGCAACCGCCCGTACCAGGGGCCATCT
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACCA-GGCCCAGCA
* * ** ** *
211684 TGTGCCGATGGTGGTCGAGGCAATCGCTTGTACCAAGGGTCAGCTTGTG-CAGATGGTGGTTGAG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTC-GATGGTGGTTGAG
* * * * * * * *
211748 GCAACCGCCCGTACCAAGGGTCAGT-TTGGGTTGATGGTGGTCTAGGCAACCGCCCACACCAGGG
129 GCAACCGCCCGCACCAGGGGCCA-TCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG
* * * *
211812 GCCATCTTCTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAAGGCCGGCTTGTGCCAATGGTG
193 GCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTG
211877 CTCGAGGCAACC
258 CTCGAGGCAACC
* * *
211889 GCCCGCACCAAGGCCCAACGCGTACCGATGGTGTTCGAGGCAACCGTCCGCACCAAGGCCCAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACC-AGGCCCAGCA
* * * * * * * *
211954 TGTGTCGATGGTGGTCGAAGCAGCCGCCCGTACCAAAGG-TCTGCTTGTGTCGATGGTGGTCGAG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACC-AAGGCCCAGCATGTGTCGATGGTGGTTGAG
* * * * * *** *
212018 GCAACTGTCCACACCAGGGGCCATCTTCTG-CTGCTGGTGGTCGAGGCAGGAGCCTGCACCAAGG
129 GCAACCGCCCGCACCAGGGGCCATCTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGG
* * * * * * * * * * * * *
212082 GCCAGCTTGTGCCGATGGTGCTTGAGGTAACCGTCCGCACCAGGGGCCATCTTTTGCAGATGATG
193 GCCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTG
* *
212147 GTCAAGGCAACC
258 CTCGAGGCAACC
* * * * * *
212159 ACCCGTACCAAGGCTCAGCACGTGCCGATGGTGCTCGAGGCAACCGTCCGCACCAAGGCTCAGTA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACC-AGGCCCAGCA
* * * * * * * *
212224 TGTACCAATGGTGGTCAAGGTAACCACCCGCACCAAGGCCCAGCATGTGTCAATGGTGTTTGACG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGG
* * * * * *
212289 TAACCGCCTGCACCAGGGGCCATTTTGTGTCGATGGTGGTCGAGGTAACCACCCGCACCAAGGGT
130 CAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
* * ** * * * * * * * *
212354 CAACTTATGTCGATGGTGGTCGAGGTAACCGCCCGCACCAGGGGCCATCTTTTACCGATGATGGT
195 CATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCT
*
212419 TGAGGCAACC
260 CGAGGCAACC
* * ** * * ** *
212429 GTCCGTACCAAATCCCAGCACGTGTCGATGGTGTTCAAGGCAACCGTCCTTACCACGACCCAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACCA-GGCCCAGCA
* * *
212494 TGTGTCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGTTTGATG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGG
* *
212559 CAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGTAATCGCCCGCACC-AGAGG
130 CAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GG
* * * ** **
212623 CAAT-TTCTATCGATGGTGGTGGAGGCAGGAGCCCGCACCAAGGGCTGGCTTGTGCCGATGGTGC
194 CCATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGC
*
212687 TCGAGGTAACC
259 TCGAGGCAACC
* ** * * * *
212698 GCCCGCACCAAAGCCCATAATGTGTCGATGGTGTTCGAGGCAACCGTCTGCACCAAGGCCTAGCA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACC-AGGCCCAGCA
* * * ** * * *
212763 TATGCTGATGGTGGTCGAGGTAACTGCCGGTACCAAGGCCCAACATGTGTCGATGGT-GTTCGAT
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTT-GAG
* * * * * *
212827 GTAACCGACCGTACCAGGAGCCATCTTGTGCCTATGGTGGTCGAGGCAACCGCCCGCACCAA-GG
129 GCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG
** * * * * ** * * *
212891 CTCGGC-ACGTATCGATGGTGTTCGAGGTAACCA-CCTACACCAGGGGCCATCTTGTGTCGATGG
194 C-CATCTTC-TACCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAGCTTGTGCCGATGG
*
212954 TGGTCGAGGCAACC
256 TGCTCGAGGCAACC
* * ** *** * *
212968 ACCCGTACCAAGGGTCAGTTGGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCACGGCCCAACA
1 GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACCA-GGCCCAGCA
** * * * * * *** * * * * * * *
213033 TGTTTCGATGATGTTCAATGCAACCGCCTACACCAGGGGCCATCTTGTGCCGATGGTGATCGAGG
65 TGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGG
* * * ** * * *
213098 CAAGCGCCCGTAACAAAGGCCGA-CTTGTGCCGATGGTGGTCGAGGTAACTGCCCGCACCAAGG
130 CAACCGCCCGCACCAGGGGCC-ATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG
213161 CCTAGCATGT
Statistics
Matches: 2992, Mismatches: 856, Indels: 231
0.73 0.21 0.06
Matches are distributed among these distances:
261 1 0.00
262 9 0.00
263 173 0.06
264 6 0.00
265 1 0.00
267 6 0.00
268 53 0.02
269 294 0.10
270 2378 0.79
271 66 0.02
272 5 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (269 bp):
GCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGGCCCAGCAT
GTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGTCGATGGTGGTTGAGGC
AACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
ATCTTCTACCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTC
GAGGCAACC
Found at i:213230 original size:89 final size:90
Alignment explanation
Indices: 213078--213247 Score: 218
Period size: 89 Copynumber: 1.9 Consensus size: 90
213068 GGGGCCATCT
* * * * *
213078 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTAACAAAGGCCGACTTGTGCCGATGGTGGTCGAGG
1 TGTGCCGATGGTGATCGAAGCAACCGCCCGTAACAAAGGCCCACTTGTGCCGATGGCGATCGAGG
213143 TAACTGCCCGCACCAAGGCCTAGCA
66 TAACTGCCCGCACCAAGGCCTAGCA
* * * *
213168 TGTGCCGATGGTGATCGAAG-AACCTCCCGT-ACCAGGGCCCAGCTTGTGTCGATGGCGATCGAG
1 TGTGCCGATGGTGATCGAAGCAACCGCCCGTAACAAAGGCCCA-CTTGTGCCGATGGCGATCGAG
* *
213231 GTAAGTGCCCGTACCAA
65 GTAACTGCCCGCACCAA
213248 AAGGTAGCCT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
88 8 0.12
89 41 0.60
90 19 0.28
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGATCGAAGCAACCGCCCGTAACAAAGGCCCACTTGTGCCGATGGCGATCGAGG
TAACTGCCCGCACCAAGGCCTAGCA
Found at i:214211 original size:26 final size:26
Alignment explanation
Indices: 214177--214227 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
214167 TGACTTAGGC
214177 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
214203 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
214228 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:214347 original size:197 final size:197
Alignment explanation
Indices: 214006--214389 Score: 491
Period size: 197 Copynumber: 1.9 Consensus size: 197
213996 TGGCTTAGGC
* * * *
214006 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGTAGCAAGACCCGTAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGAGTTACGGTAGCAAGACCAGCAGC
* * * * *
214071 AGGATCAACAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTAGCC
66 AGGATCAACAGCACACAGAGGGGGACCAGATCGATCCCCGACTTGCGCATCATGCCCCTCCAACC
* *
214136 GGCTGGGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 GACTGAGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
214201 GT
196 GT
* * *
214203 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGAGTTACGGTAGTAGGACCAGCAG
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGAGTTACGGTAGCAAGACCAGCAG
* * * ** * ** * *
214267 TAGGATCGACAGCTCACAGAGGGGGATTAGGTCGATCTTCGACTTGCGCATTATGCCTCTCCAAC
65 CAGGATCAACAGCACACAGAGGGGGACCAGATCGATCCCCGACTTGCGCATCATGCCCCTCCAAC
* * * * *
214332 CGATTGAGTGCCCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
130 CGACTGAGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
214390 ATTTCTAAGC
Statistics
Matches: 157, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
196 1 0.01
197 156 0.99
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (197 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGAGTTACGGTAGCAAGACCAGCAGC
AGGATCAACAGCACACAGAGGGGGACCAGATCGATCCCCGACTTGCGCATCATGCCCCTCCAACC
GACTGAGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GT
Found at i:214910 original size:354 final size:357
Alignment explanation
Indices: 214068--214911 Score: 1053
Period size: 356 Copynumber: 2.4 Consensus size: 357
214058 CAAGACCCGT
* * *
214068 AGCAGGATCAACAGCACGCAGAGGGGGACCCGATCGATCC-CCGACTTGCGCATCCTGCCCCTCT
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCTCCGACTTGCGCATCCTGCCCCTCT
** * *
214132 -AGCCGGCTGGGCGCCCATACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCA
66 GA-CCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCA
* ** * * * *
214195 GTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGTAGTAGGA
129 GTCTAAGCATACAAAGTTCATTCCCAGTCGAAGATCGGACCAGACCGAGAGTTACGATAGCAAGA
* * ** *
214260 CCAGCAGTAGGATCGACAGCTCACAGAGGGGGATTAGGTCGATCTTCGACTTGCGCATTATGCCT
194 CCAGCAGCAGGATCGACAGCACACAGAGGGGGACGAGATCGATCTTCGACTTGCGCATTATGCCT
* *
214325 CTCCAACCGATTGAGTGCCCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
259 CTCCAACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
214390 ATTTCTAAGCCCCAGTCAGACTGAGGGTTGTGGT
324 ATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGC
* * * *
214424 AGCAGGATCGATAGCATGCAGAGGGGGACCGGGTCGAT-CTTCGACTTGTGCATCCTGCCCCTCT
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCTCCGACTTGCGCATCCTGCCCCTCT
* * * * * * *
214488 GGCCGGCTCAGTGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATATGACGTTCATTCTCAGT
66 GACCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* *
214553 CTAAGCATACAAAGTTCATTCCCAGTCGAAGATCGGACCAGACCGAGGGTTGCGATAGCAAGACC
131 CTAAGCATACAAAGTTCATTCCCAGTCGAAGATCGGACCAGACCGAGAGTTACGATAGCAAGACC
* * * *
214618 AGCAGCAGGATTGGCAGCACGCA-AGGGGGACCGA-ATCGATCCTT-GGCTTGCGCATTATGCCT
196 AGCAGCAGGATCGACAGCACACAGAGGGGGA-CGAGATCGAT-CTTCGACTTGCGCATTATGCCT
* * * * *
214680 CTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTTATTCC
259 CTCCAACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
214745 ATGTCTAAG-CCCAG-CTGGA-TCGAGGGTTGTGGC
324 ATGTCTAAGCCCCAGTC-AGACT-GAGGGTTGTGGC
* * * * *
214778 AGTAGTATCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCCG-CTTACGCATCCTACCCCTCT
1 AGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCTCCGACTTGCGCATCCTGCCCCTCT
* * * * *
214842 GATCGGCTCAACACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
66 GACCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
214907 CTAAG
131 CTAAG
214912 ATCGGACCCG
Statistics
Matches: 413, Mismatches: 67, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
353 2 0.00
354 126 0.31
355 100 0.24
356 184 0.45
357 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (357 bp):
AGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCTCCGACTTGCGCATCCTGCCCCTCT
GACCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
CTAAGCATACAAAGTTCATTCCCAGTCGAAGATCGGACCAGACCGAGAGTTACGATAGCAAGACC
AGCAGCAGGATCGACAGCACACAGAGGGGGACGAGATCGATCTTCGACTTGCGCATTATGCCTCT
CCAACCGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGTCAGACTGAGGGTTGTGGC
Found at i:215060 original size:148 final size:146
Alignment explanation
Indices: 214792--215207 Score: 480
Period size: 148 Copynumber: 2.8 Consensus size: 146
214782 GTATCGACAG
* * *
214792 CACGCAGAGGGGGACTGGGTCGATCCTCCGCTTACGCATCCTACCCCT-CTGATCGGCTCAACAC
1 CACGCAGAGAGGGAC-GGGCCGATCC-CCGCTTACGCATCCTACCCCTCCAG-TCGGCTCAACAC
* *
214856 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACC
63 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACC
214920 CGCAGCAGGATCAACAACAA
127 CGCAGCAGGATCAACAACAA
* * * **
214940 CACGCAGAGAGGGATCGGGCCGATCCCCTGCTTGCACATCTTACCCCTCCAGTCGGCTCAATGCC
1 CACGCAGAGAGGGA-CGGGCCGATCCCC-GCTTACGCATCCTACCCCTCCAGTCGGCTCAACACC
* *
215005 CGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCTG
64 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCCG
* * ** *
215070 TAGTAGGATCGGCAACAG
129 CAGCAGGATCAACAACAA
* * * * * *
215088 CACGCAGA-AGGGGACCGGGCTGATCCTCGGCTTACGCATCCTACCTCTCCGGTCGGCTGAGCAC
1 CACGCAGAGA-GGGA-CGGGCCGATCC-CCGCTTACGCATCCTACCCCTCCAGTCGGCTCAACAC
* * *
215152 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCC-GATCTAAG
63 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG-TCTAAG
215208 CCCCAATCGA
Statistics
Matches: 228, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
147 4 0.02
148 219 0.96
149 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (146 bp):
CACGCAGAGAGGGACGGGCCGATCCCCGCTTACGCATCCTACCCCTCCAGTCGGCTCAACACCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCCGCA
GCAGGATCAACAACAA
Found at i:217436 original size:20 final size:20
Alignment explanation
Indices: 217411--217448 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
217401 ATGTTTAAGA
217411 ATAAAAATGA-AAAAAAAAAG
1 ATAAAAA-GATAAAAAAAAAG
217431 ATAAAAAGATAAAAAAAA
1 ATAAAAAGATAAAAAAAA
217449 TTGTCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (20 bp):
ATAAAAAGATAAAAAAAAAG
Found at i:219018 original size:22 final size:25
Alignment explanation
Indices: 218993--219040 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
218983 ATGATACAAT
*
218993 TGATAAA-AA-TAATTATT-AATTA
1 TGATAAATAATTAAATATTAAATTA
219015 TGATAAATAATTAAATATTAAATTA
1 TGATAAATAATTAAATATTAAATTA
219040 T
1 T
219041 TAATATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 2 0.09
24 7 0.32
25 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TGATAAATAATTAAATATTAAATTA
Found at i:219890 original size:25 final size:25
Alignment explanation
Indices: 219868--219937 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
219858 AATTATTATT
*
219868 TAATTATTATTATTATAATATTAAA
1 TAATTATTATTATAATAATATTAAA
219893 TAATTATTATTATAAT-A-ATT--A
1 TAATTATTATTATAATAATATTAAA
*
219914 T-ATTATTA-TAAAATAATATTAAA
1 TAATTATTATTATAATAATATTAAA
219937 T
1 T
219938 CTAAGGGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 5 0.13
20 8 0.21
21 5 0.13
23 5 0.13
24 1 0.03
25 15 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TAATTATTATTATAATAATATTAAA
Found at i:219898 original size:22 final size:22
Alignment explanation
Indices: 219864--219937 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
219854 TTTAAATTAT
*
219864 TATTTAATTATTATTATTATAA
1 TATTAAATTATTATTATTATAA
*
219886 TATTAAATAATTATTATTATAA
1 TATTAAATTATTATTATTATAA
* **
219908 TAATTATATTATTA-TAAAATAA
1 T-ATTAAATTATTATTATTATAA
219930 TATTAAAT
1 TATTAAAT
219938 CTAAGGGTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
21 6 0.14
22 28 0.64
23 10 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTAAATTATTATTATTATAA
Found at i:219900 original size:19 final size:20
Alignment explanation
Indices: 219875--219929 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
219865 ATTTAATTAT
*
219875 TATTATTATAATATTAAATA
1 TATTATTATAATAATAAATA
* *
219895 -ATTATTATTATAATAATTA
1 TATTATTATAATAATAAATA
219914 TATTATTATAA-AATAA
1 TATTATTATAATAATAA
219930 TATTAAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 21 0.70
20 9 0.30
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTATTATAATAATAAATA
Found at i:219924 original size:14 final size:15
Alignment explanation
Indices: 219859--219924 Score: 74
Period size: 14 Copynumber: 4.9 Consensus size: 15
219849 CATATTTTAA
219859 ATTATTATT-TAATT
1 ATTATTATTATAATT
219873 ATTATTATTATAA-T
1 ATTATTATTATAATT
219887 ATTA--A--ATAATT
1 ATTATTATTATAATT
*
219898 ATTATTATAATAATT
1 ATTATTATTATAATT
219913 A-TATTATTATAA
1 ATTATTATTATAA
219925 AATAATATTA
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
10 4 0.09
11 5 0.11
12 1 0.02
13 1 0.02
14 24 0.53
15 10 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATTATTATAATT
Found at i:221115 original size:31 final size:29
Alignment explanation
Indices: 221066--221146 Score: 69
Period size: 31 Copynumber: 2.8 Consensus size: 29
221056 TATTAAATAT
221066 ATTAATAATATTAATAATTTATTCAATAGCC
1 ATTAATAATATTAATAA-TTATT-AATAGCC
* ** *
221097 ATTAATAGTATTGTTAATTATTAATA-CA
1 ATTAATAATATTAATAATTATTAATAGCC
* *
221125 ATT-ATTA-ATTAATGATTATTAA
1 ATTAATAATATTAATAATTATTAA
221147 AATTTTTTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
26 12 0.29
27 2 0.05
28 4 0.10
29 4 0.10
30 5 0.12
31 14 0.34
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (29 bp):
ATTAATAATATTAATAATTATTAATAGCC
Found at i:221891 original size:16 final size:16
Alignment explanation
Indices: 221870--221928 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
221860 ATGTTTAAAT
221870 TTATTAACT-ATAATTA
1 TTATTAA-TAATAATTA
221886 TTATTAATAATAATTA
1 TTATTAATAATAATTA
*
221902 -TAAT-ATAATAATTA
1 TTATTAATAATAATTA
*
221916 TAATTAAT-ATAAT
1 TTATTAATAATAAT
221929 ATTTATATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 10 0.27
15 11 0.30
16 16 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATTAATAATAATTA
Found at i:223124 original size:21 final size:21
Alignment explanation
Indices: 223098--223153 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
223088 TCTAAATTAA
223098 ATAATATAATATTATTTTACT
1 ATAATATAATATTATTTTACT
223119 ATAATATAATATTATTTTACT
1 ATAATATAATATTATTTTACT
223140 ATAATA-AACTATTA
1 ATAATATAA-TATTA
223154 CATATTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.06
21 32 0.94
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAATATAATATTATTTTACT
Found at i:223188 original size:18 final size:17
Alignment explanation
Indices: 223149--223192 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
223139 TATAATAAAC
*
223149 TATTACATATTTAATTAA
1 TATTA-ATATTAAATTAA
*
223167 TATTAATATTAAATTATT
1 TATTAATATTAAATTA-A
223185 TATTAATA
1 TATTAATA
223193 GTTATTATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAATATTAAATTAA
Found at i:223435 original size:61 final size:60
Alignment explanation
Indices: 223320--223487 Score: 161
Period size: 60 Copynumber: 2.8 Consensus size: 60
223310 TAATAAAAAT
* *
223320 ATATAATATAATAATTATATATTTATT-ATTTTAT-TTAT-AGTAATTATAAATATTATATTA
1 ATATAATATAATAATTATATATTT-TTAATTATATATTATAAATAATTATAAATA-T-TATTA
* *
223380 AT-TAATATGAATAATTATAAATTTTTAATTATATATTATAAATAATT-TAACTATTATTA
1 ATATAATAT-AATAATTATATATTTTTAATTATATATTATAAATAATTATAAATATTATTA
* * *
223439 ATATTATGATAAACAATTATATATTTTAAATTA-ATATT-TAAATTAATTA
1 ATATAAT-AT-AATAATTATATATTTTTAATTATATATTATAAA-TAATTA
223488 AAACTAATTT
Statistics
Matches: 91, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
59 19 0.21
60 36 0.40
61 30 0.33
62 6 0.07
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (60 bp):
ATATAATATAATAATTATATATTTTTAATTATATATTATAAATAATTATAAATATTATTA
Found at i:223437 original size:21 final size:21
Alignment explanation
Indices: 223393--223438 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
223383 AATATGAATA
* *
223393 ATTATAAATTTTTAATTATAT
1 ATTATAAATATTTAACTATAT
223414 ATTATAAATAATTTAACTAT-T
1 ATTATAAAT-ATTTAACTATAT
223435 ATTA
1 ATTA
223439 ATATTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATAAATATTTAACTATAT
Found at i:223480 original size:12 final size:13
Alignment explanation
Indices: 223453--223485 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
223443 TATGATAAAC
223453 AATTATATATTTTA
1 AATTA-ATATTTTA
223467 AATTAATA-TTTA
1 AATTAATATTTTA
223479 AATTAAT
1 AATTAAT
223486 TAAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 3 0.16
14 5 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTAATATTTTA
Found at i:224143 original size:9 final size:10
Alignment explanation
Indices: 224129--224179 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
224119 TTAATTGGAT
224129 TATTAAAT-A
1 TATTAAATAA
224138 TATT-AATAA
1 TATTAAATAA
224147 TATTAATATAA
1 TATTAA-ATAA
224158 TATTATTAATAA
1 TATTA--AATAA
224170 TATT-AATAA
1 TATTAAATAA
224179 T
1 T
224180 TTATTCAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.08
9 15 0.41
10 1 0.03
11 9 0.24
12 8 0.22
13 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAATAA
Found at i:224184 original size:23 final size:23
Alignment explanation
Indices: 224134--224177 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
224124 TGGATTATTA
224134 AATA-TATTAATAATATTAATAT
1 AATATTATTAATAATATTAATAT
224156 AATATTATTAATAATATTAATA
1 AATATTATTAATAATATTAATA
224178 ATTTATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATATTATTAATAATATTAATAT
Found at i:224211 original size:31 final size:29
Alignment explanation
Indices: 224162--224242 Score: 78
Period size: 31 Copynumber: 2.8 Consensus size: 29
224152 ATATAATATT
224162 ATTAATAATATTAATAATTTATTCAATAGCC
1 ATTAATAATATTAATAA-TTATT-AATAGCC
** *
224193 ATTAATAATATTGTTAATTATTAATA-CA
1 ATTAATAATATTAATAATTATTAATAGCC
* *
224221 ATTATTAATA--AATGATTATTAA
1 ATTAATAATATTAATAATTATTAA
224243 AAAAATTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 9 0.21
28 10 0.23
29 4 0.09
30 5 0.12
31 15 0.35
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (29 bp):
ATTAATAATATTAATAATTATTAATAGCC
Found at i:224228 original size:19 final size:19
Alignment explanation
Indices: 224127--224229 Score: 61
Period size: 19 Copynumber: 5.1 Consensus size: 19
224117 TTTTAATTGG
*
224127 ATTATTAA-ATATATTAATA
1 ATTATTAATA-ATATTATTA
224146 A-TATTAATATAATATTATTA
1 ATTATT-A-ATAATATTATTA
224166 ATAATATTAATAAT-TTATTCA
1 AT--TATTAATAATATTATT-A
* *
224187 ATAGCCATTAATAATATTGTTA
1 AT---TATTAATAATATTATTA
224209 ATTATTAATACA-ATTATTA
1 ATTATTAATA-ATATTATTA
224228 AT
1 AT
224230 AAATGATTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 20
0.71 0.07 0.21
Matches are distributed among these distances:
18 4 0.06
19 17 0.25
20 16 0.24
21 9 0.13
22 13 0.19
23 8 0.12
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.47
Consensus pattern (19 bp):
ATTATTAATAATATTATTA
Found at i:224404 original size:17 final size:17
Alignment explanation
Indices: 224382--224416 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
224372 TTTAATACAT
*
224382 TAATTATACAATTAATA
1 TAATTAAACAATTAATA
*
224399 TAATTAAATAATTAATA
1 TAATTAAACAATTAATA
224416 T
1 T
224417 TTAACATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATTAAACAATTAATA
Found at i:224560 original size:22 final size:22
Alignment explanation
Indices: 224535--224578 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
224525 GATTATCCCC
224535 TCCTAAAATTTGACATGTTAGA
1 TCCTAAAATTTGACATGTTAGA
224557 TCCTAAAATTTGACATGTTAGA
1 TCCTAAAATTTGACATGTTAGA
224579 AATCTAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (22 bp):
TCCTAAAATTTGACATGTTAGA
Found at i:224780 original size:21 final size:22
Alignment explanation
Indices: 224754--224801 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
224744 TATAATATAA
*
224754 AATTAATTATATTA-TTATGTT
1 AATTAATTATACTATTTATGTT
*
224775 AATTAATTATACTATTTATTTT
1 AATTAATTATACTATTTATGTT
224797 AATTA
1 AATTA
224802 GTAAGTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
AATTAATTATACTATTTATGTT
Found at i:225021 original size:13 final size:13
Alignment explanation
Indices: 224995--225033 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
224985 TAATAAACAC
224995 TAAT-TTAATAATA
1 TAATATTAAT-ATA
225008 TAATATTAATATA
1 TAATATTAATATA
*
225021 TAAAATTAATATA
1 TAATATTAATATA
225034 ATATTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 19 0.79
14 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAATATTAATATA
Found at i:225429 original size:9 final size:9
Alignment explanation
Indices: 225382--225441 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
225372 ATATATAACA
225382 ATTATTAAT
1 ATTATTAAT
*
225391 AATATATAAT
1 ATTAT-TAAT
225401 ATTATATCTAA-
1 A-T-TAT-TAAT
*
225412 ATTAATAAT
1 ATTATTAAT
225421 ATTATTAAT
1 ATTATTAAT
*
225430 ATAATTAAT
1 ATTATTAAT
225439 ATT
1 ATT
225442 TGATTGATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
8 3 0.08
9 24 0.60
10 6 0.15
11 1 0.03
12 6 0.15
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTATTAAT
Found at i:225434 original size:17 final size:17
Alignment explanation
Indices: 225293--225441 Score: 54
Period size: 17 Copynumber: 8.1 Consensus size: 17
225283 TAATAACCAT
225293 TTATTAATATAATCTAAT-
1 TTATTAATATAA--TAATA
* *
225311 TTAATAGTATAATCAA-A
1 TTATTAATATAAT-AATA
* *
225328 TTAATAATCTAAT-ATAA
1 TTATTAATATAATAAT-A
* * * *
225345 CTATTAATGTCATATATT
1 TTATTAATATAATA-ATA
*
225363 TTATTATATATATATAACAA
1 TTATTA-ATATA-ATAA-TA
225383 TTATTAATAATATATAATA
1 TTATTAAT-ATA-ATAATA
225402 TTATATCTAA-ATTAATAATA
1 -T-TAT-TAATA-TAATAATA
225422 TTATTAATATAATTAATA
1 TTATTAATATAA-TAATA
225440 TT
1 TT
225442 TGATTGATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
15 1 0.01
16 1 0.01
17 29 0.29
18 26 0.26
19 10 0.10
20 25 0.25
21 5 0.05
22 3 0.03
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (17 bp):
TTATTAATATAATAATA
Found at i:225759 original size:29 final size:30
Alignment explanation
Indices: 225717--225790 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 30
225707 TATAGTTTTA
225717 AATAT-TATATAAATCACAT-TTATTATA-AT
1 AATATATA-ATAAATCA-ATATTATTATACAT
*
225746 AATATATAATAAATTAATATTATTATACTAT
1 AATATATAATAAATCAATATTATTATAC-AT
*
225777 AATTTATTAATAAA
1 AATATA-TAATAAA
225791 AGTATTACAC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 2 0.05
29 20 0.53
30 2 0.05
31 7 0.18
32 7 0.18
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (30 bp):
AATATATAATAAATCAATATTATTATACAT
Found at i:226203 original size:9 final size:10
Alignment explanation
Indices: 226189--226239 Score: 52
Period size: 10 Copynumber: 4.9 Consensus size: 10
226179 ATTTAATAAT
226189 ATTATA-TTA
1 ATTATATTTA
226198 ATTATATTTA
1 ATTATATTTA
226208 A-TATAATTTA
1 ATTAT-ATTTA
226218 ATTATATTGATA
1 ATTATATT--TA
226230 ATTCATATTT
1 ATT-ATATTT
226240 TTACTTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
9 9 0.25
10 13 0.36
11 4 0.11
12 5 0.14
13 5 0.14
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (10 bp):
ATTATATTTA
Found at i:226220 original size:20 final size:21
Alignment explanation
Indices: 226185--226225 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
226175 TAATATTTAA
*
226185 TAATATTATATTAATTATATT
1 TAATATAATATTAATTATATT
226206 TAATATAAT-TTAATTATATT
1 TAATATAATATTAATTATATT
226226 GATAATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATATAATATTAATTATATT
Found at i:226721 original size:18 final size:19
Alignment explanation
Indices: 226695--226780 Score: 63
Period size: 18 Copynumber: 4.5 Consensus size: 19
226685 ATCTAATGTT
*
226695 ATATTAATTATAATA-TAA
1 ATATAAATTATAATATTAA
*
226713 ATATAAATTAGTAATATTAT
1 ATATAAATTA-TAATATTAA
226733 ATATAAAATTTATAAATATTAA
1 ATAT-AAA-TTAT-AATATTAA
* *
226755 A-AAATAATTA-AATA-TAT
1 ATATA-AATTATAATATTAA
226772 ATATAAATT
1 ATATAAATT
226781 TAACTTACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.13
18 15 0.27
19 5 0.09
20 10 0.18
21 7 0.13
22 11 0.20
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (19 bp):
ATATAAATTATAATATTAA
Found at i:226984 original size:20 final size:20
Alignment explanation
Indices: 226959--227004 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
226949 TAAACGTTAT
226959 ATAATTTATATA-ATAATTTA
1 ATAATTTA-ATAGATAATTTA
*
226979 ATAATTTAATAGATTATTTA
1 ATAATTTAATAGATAATTTA
*
226999 ACAATT
1 ATAATT
227005 AACTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
ATAATTTAATAGATAATTTA
Found at i:227186 original size:19 final size:22
Alignment explanation
Indices: 227126--227190 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 22
227116 ATATTAGGAT
*
227126 TAATATTAAATTATATTATTACTAA
1 TAATAGTAAATTA-A-T-TTACTAA
227151 TAATAGTAAATTAATTTACTAA
1 TAATAGTAAATTAATTTACTAA
227173 TAATAGTAATATTTAATT
1 TAATAGTAA-A-TTAATT
227191 ATTGATAGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 16 0.43
23 2 0.05
24 7 0.19
25 12 0.32
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (22 bp):
TAATAGTAAATTAATTTACTAA
Found at i:227542 original size:27 final size:26
Alignment explanation
Indices: 227492--227552 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
227482 ACTATTAAAA
* * *
227492 TAATTATAA-AAATAATTTTTATATGT
1 TAATT-TAATAAATAATATTAATATAT
227518 TAATATTAATAAATAATATTAATATAT
1 TAAT-TTAATAAATAATATTAATATAT
227545 TAATTTAA
1 TAATTTAA
227553 AATAACAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 11 0.37
27 19 0.63
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
TAATTTAATAAATAATATTAATATAT
Found at i:227552 original size:13 final size:14
Alignment explanation
Indices: 227512--227552 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
227502 AATAATTTTT
*
227512 ATATGTTAATATTA
1 ATATATTAATATTA
*
227526 ATA-AATAATATTA
1 ATATATTAATATTA
227539 ATATATTAAT-TTA
1 ATATATTAATATTA
227552 A
1 A
227553 AATAACAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (14 bp):
ATATATTAATATTA
Found at i:227567 original size:44 final size:40
Alignment explanation
Indices: 227518--227615 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 40
227508 TTTTATATGT
*
227518 TAATATTAATAAATAATATTAATATATTAATTTAAAATAACAAG
1 TAATATT-AT-AAT-ATATCAATATATT-ATTTAAAATAACAAG
* * * *
227562 TAATATTATAGTTTATCAATATATTATTTAAAATAATAAA
1 TAATATTATAATATATCAATATATTATTTAAAATAACAAG
227602 TAATTTATTATAAT
1 TAA--TATTATAAT
227616 TATTATAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
40 16 0.35
41 11 0.24
42 10 0.22
43 2 0.04
44 7 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (40 bp):
TAATATTATAATATATCAATATATTATTTAAAATAACAAG
Found at i:227671 original size:25 final size:24
Alignment explanation
Indices: 227614--227673 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
227604 ATTTATTATA
227614 ATTATTATAATTATATATTGTAAT
1 ATTATTATAATTATATATTGTAAT
* *
227638 -TTGTATATAACTTA-ATTATTTTAAT
1 ATTAT-TATAA-TTATA-TATTGTAAT
227663 ATTATTATAAT
1 ATTATTATAAT
227674 ATTTTACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
23 3 0.10
24 7 0.24
25 16 0.55
26 3 0.10
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (24 bp):
ATTATTATAATTATATATTGTAAT
Found at i:228666 original size:22 final size:22
Alignment explanation
Indices: 228641--228723 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 22
228631 ATTAATCAAT
*
228641 TTTAATTTATTTAA-TAATATTA
1 TTTAAATTA-TTAATTAATATTA
228663 TTTAAATTATTAATTAATA-TA
1 TTTAAATTATTAATTAATATTA
*
228684 TTGATTAATATTATTAA-TAATAAATA
1 -T--TTAA-ATTATTAATTAAT-ATTA
*
228710 TTTATATTATTAAT
1 TTTAAATTATTAAT
228724 ATTAATAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
21 6 0.12
22 22 0.43
23 3 0.06
24 8 0.16
25 10 0.20
26 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
TTTAAATTATTAATTAATATTA
Found at i:228673 original size:12 final size:13
Alignment explanation
Indices: 228643--228727 Score: 54
Period size: 12 Copynumber: 6.6 Consensus size: 13
228633 TAATCAATTT
228643 TAAT-TTATTTAA
1 TAATATTATTTAA
228655 TAATATTATTTAA
1 TAATATTATTTAA
* *
228668 -ATTATTAATTAA
1 TAATATTATTTAA
228680 T-ATATTGA-TTAA
1 TAATATT-ATTTAA
* *
228692 TATTATTA-ATAA
1 TAATATTATTTAA
*
228704 TAAATATTTATATTAT
1 T-AATA-TTAT-TTAA
228720 TAATATTA
1 TAATATTA
228728 ATAACATCGG
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
12 28 0.49
13 16 0.28
14 6 0.11
15 4 0.07
16 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (13 bp):
TAATATTATTTAA
Found at i:228724 original size:22 final size:22
Alignment explanation
Indices: 228651--228729 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
228641 TTTAATTTAT
*
228651 TTAATAAT-ATTATTTAAATTA
1 TTAATAATAATTATTTATATTA
*
228672 TTAATTAATATATTGATTAATATTA
1 TTAA-TAATA-ATT-ATTTATATTA
*
228697 TTAATAATAAATATTTATATTA
1 TTAATAATAATTATTTATATTA
*
228719 TTAATATTAAT
1 TTAATAATAAT
228730 AACATCGGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
21 4 0.08
22 22 0.46
23 2 0.04
24 8 0.17
25 12 0.25
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (22 bp):
TTAATAATAATTATTTATATTA
Found at i:228731 original size:25 final size:23
Alignment explanation
Indices: 228651--228723 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 23
228641 TTTAATTTAT
*
228651 TTAATAATATTATTTAAATTATTAA
1 TTAATAA-A-TATTTATATTATTAA
* *
228676 TTAATATATTGATTAATATTATTAA
1 TTAATA-AAT-ATTTATATTATTAA
228701 -TAATAAATATTTATATTATTAA
1 TTAATAAATATTTATATTATTAA
228723 T
1 T
228724 ATTAATAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 13 0.32
23 2 0.05
24 6 0.15
25 18 0.45
26 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (23 bp):
TTAATAAATATTTATATTATTAA
Found at i:229389 original size:18 final size:19
Alignment explanation
Indices: 229354--229397 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
229344 TTTATTTATG
229354 TTAAT-TATAAAATAATAA
1 TTAATATATAAAATAATAA
*
229372 TTAATATATATAAT-ATAA
1 TTAATATATAAAATAATAA
229390 TTAATATA
1 TTAATATA
229398 ATTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAATATATAAAATAATAA
Found at i:229398 original size:9 final size:9
Alignment explanation
Indices: 229368--229401 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
229358 TTATAAAATA
229368 ATAATTAAT
1 ATAATTAAT
229377 AT-ATATAAT
1 ATAAT-TAAT
229386 ATAATTAAT
1 ATAATTAAT
229395 ATAATTA
1 ATAATTA
229402 TTTTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATAATTAAT
Found at i:229851 original size:16 final size:17
Alignment explanation
Indices: 229832--229864 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
229822 TAACAATTTA
229832 AAATAG-ATAATTATTC
1 AAATAGTATAATTATTC
229848 AAATAGTTATAATTATT
1 AAATAG-TATAATTATT
229865 TGACTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
AAATAGTATAATTATTC
Found at i:230312 original size:29 final size:29
Alignment explanation
Indices: 230279--230347 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
230269 TATGATTTAT
*
230279 TAATTAAATAAT-ATTTTTAATGTTACAAA
1 TAATTAAATAATAATTATTAAT-TTACAAA
* * *
230308 TAATTATATATTAATTATTAATTTATAAA
1 TAATTAAATAATAATTATTAATTTACAAA
230337 -AATATAAATAA
1 TAAT-TAAATAA
230348 ATTGATATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 3 0.09
29 21 0.66
30 8 0.25
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
TAATTAAATAATAATTATTAATTTACAAA
Found at i:230364 original size:3 final size:3
Alignment explanation
Indices: 230356--230381 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
230346 AAATTGATAT
230356 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
230382 GTAGTAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:230449 original size:14 final size:14
Alignment explanation
Indices: 230432--230473 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
230422 TATAACAAAT
230432 TATTT-ATATGTTAA
1 TATTTAATAT-TTAA
230446 TATTTAATATTTAA
1 TATTTAATATTTAA
*
230460 TA-TTAATAATTAA
1 TATTTAATATTTAA
230473 T
1 T
230474 GGAATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 11 0.42
15 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTTAATATTTAA
Found at i:230454 original size:7 final size:7
Alignment explanation
Indices: 230432--230473 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
230422 TATAACAAAT
230432 TATTT-A
1 TATTTAA
230438 TATGTTAA
1 TAT-TTAA
230446 TATTTAA
1 TATTTAA
230453 TATTTAA
1 TATTTAA
230460 TA-TTAA
1 TATTTAA
*
230466 TAATTAA
1 TATTTAA
230473 T
1 T
230474 GGAATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 9 0.27
7 20 0.61
8 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (7 bp):
TATTTAA
Found at i:230467 original size:20 final size:21
Alignment explanation
Indices: 230432--230473 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
230422 TATAACAAAT
* *
230432 TATTTATATGTTAATATTTAA
1 TATTTATATATTAATAATTAA
230453 TATTTA-ATATTAATAATTAA
1 TATTTATATATTAATAATTAA
230473 T
1 T
230474 GGAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TATTTATATATTAATAATTAA
Found at i:230969 original size:26 final size:26
Alignment explanation
Indices: 230896--230969 Score: 71
Period size: 26 Copynumber: 2.7 Consensus size: 26
230886 TTAAATATTA
*
230896 ATTAATAATAGTACATTAATTACATAACT
1 ATTAATAATA-TA-ATTAA-TACATAAAT
*
230925 -TTAA-ATTATAATTACAATACATAAAT
1 ATTAATAATATAATT--AATACATAAAT
230951 ATTAATAATATAATTAATA
1 ATTAATAATATAATTAATA
230970 TGATTTATAC
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
25 3 0.08
26 14 0.37
27 9 0.24
28 12 0.32
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (26 bp):
ATTAATAATATAATTAATACATAAAT
Found at i:231076 original size:18 final size:18
Alignment explanation
Indices: 231058--231095 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
231048 GTATTAGAAT
231058 ATATT-AATA-ATTAAAA
1 ATATTAAATAGATTAAAA
*
231074 ATATTAAATAGATTAATA
1 ATATTAAATAGATTAAAA
231092 ATAT
1 ATAT
231096 GTATATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 4 0.21
18 10 0.53
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
ATATTAAATAGATTAAAA
Found at i:231101 original size:40 final size:36
Alignment explanation
Indices: 231057--231138 Score: 87
Period size: 35 Copynumber: 2.2 Consensus size: 36
231047 TGTATTAGAA
*
231057 TATATTAATAATTAAAAATATTAAATAGATTAATAATATG
1 TATATTAATAATTAAAAA-ATT--AT-GAATAATAATATG
* *
231097 TATA-TGATAATTCAAAAATTATGAATAATAATATG
1 TATATTAATAATTAAAAAATTATGAATAATAATATG
231132 T-TATTAA
1 TATATTAA
231139 AAATAATTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
34 2 0.05
35 15 0.41
36 2 0.05
38 3 0.08
39 11 0.30
40 4 0.11
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.40
Consensus pattern (36 bp):
TATATTAATAATTAAAAAATTATGAATAATAATATG
Found at i:231679 original size:28 final size:27
Alignment explanation
Indices: 231648--231708 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
231638 AAACTTATAA
*
231648 ATTTA-TAAATATCTATTATTACTTATTT
1 ATTTATTAAA-AT-TATTATTAATTATTT
*
231676 ATTTATTTAAAATTATTATTAATTTTTT
1 ATTTA-TTAAAATTATTATTAATTATTT
231704 ATTTA
1 ATTTA
231709 AATTATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 23 0.79
29 2 0.07
30 4 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTATTAAAATTATTATTAATTATTT
Found at i:231700 original size:25 final size:24
Alignment explanation
Indices: 231662--231728 Score: 86
Period size: 23 Copynumber: 2.8 Consensus size: 24
231652 ATAAATATCT
231662 ATTATTACTT-ATTTATTTATTTAAA
1 ATTATTA-TTAATTTATTTATTT-AA
231687 ATTATTATTAATTT-TTTATTTAA
1 ATTATTATTAATTTATTTATTTAA
*
231710 ATTA-TATTAAATTATTTAT
1 ATTATTATTAATTTATTTAT
231729 AATTTAAAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
22 8 0.21
23 11 0.28
24 9 0.23
25 11 0.28
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (24 bp):
ATTATTATTAATTTATTTATTTAA
Found at i:231718 original size:28 final size:28
Alignment explanation
Indices: 231655--231718 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
231645 TAAATTTATA
* *
231655 AATATCTATTATTACTTATTTATTTATTT
1 AATAT-TATTATTAATTATTTATTTAATT
* *
231684 AAAATTATTATTAATTTTTTATTTAAATT
1 AATATTATTATTAATTATTTATTT-AATT
231713 -ATATTA
1 AATATTA
231719 AATTATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (28 bp):
AATATTATTATTAATTATTTATTTAATT
Found at i:231722 original size:23 final size:24
Alignment explanation
Indices: 231662--231737 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 24
231652 ATAAATATCT
231662 ATTATTACTT-ATTTATTTATTTAAA
1 ATTATTA-TTAATTT-TTTATTTAAA
231687 ATTATTATTAATTTTTTATTT-AA
1 ATTATTATTAATTTTTTATTTAAA
231710 ATTA-TATTAAATTATTTATAATTTAAA
1 ATTATTATT-AATT-TTT-T-ATTTAAA
231737 A
1 A
231738 GATTACATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
22 4 0.09
23 10 0.22
24 12 0.27
25 12 0.27
26 4 0.09
27 3 0.07
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (24 bp):
ATTATTATTAATTTTTTATTTAAA
Found at i:232339 original size:19 final size:19
Alignment explanation
Indices: 232313--232363 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
232303 ATTATATAAA
232313 ATTAATATTAAATAATGTAT
1 ATTAATATTAAATAAT-TAT
232333 A-TAATA-T-AA-AATTAT
1 ATTAATATTAAATAATTAT
232348 ATTAATATTATAATAA
1 ATTAATATTA-AATAA
232364 ATTAGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
15 4 0.15
16 8 0.31
17 3 0.12
18 1 0.04
19 7 0.27
20 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTAATATTAAATAATTAT
Found at i:232355 original size:16 final size:16
Alignment explanation
Indices: 232301--232355 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
232291 ATTTAGTAAA
232301 ATATT-ATATAAAATT
1 ATATTAATATAAAATT
232316 AATATTAA-AT--AATGT
1 -ATATTAATATAAAAT-T
232331 ATA-TAATATAAAATT
1 ATATTAATATAAAATT
232346 ATATTAATAT
1 ATATTAATAT
232356 TATAATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 3 0.09
14 8 0.24
15 5 0.15
16 16 0.48
17 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
ATATTAATATAAAATT
Found at i:232791 original size:13 final size:13
Alignment explanation
Indices: 232747--232821 Score: 66
Period size: 13 Copynumber: 5.8 Consensus size: 13
232737 TAAAATCATA
* *
232747 TAATTTTAATTAT
1 TAATTATAAATAT
232760 T-ATT-TAAATTAT
1 TAATTATAAA-TAT
232772 TAA-TATAAATAT
1 TAATTATAAATAT
*
232784 TAATTATATATAT
1 TAATTATAAATAT
232797 TAATTATAAATTAT
1 TAATTATAAA-TAT
* *
232811 AAATAATAAAT
1 TAATTATAAAT
232822 TGGATAATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
11 3 0.06
12 14 0.27
13 24 0.46
14 11 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TAATTATAAATAT
Found at i:232810 original size:7 final size:7
Alignment explanation
Indices: 232764--232822 Score: 52
Period size: 7 Copynumber: 8.9 Consensus size: 7
232754 AATTATTATT
232764 TAAATTA
1 TAAATTA
*
232771 TTAA-TA
1 TAAATTA
232777 TAAA-TA
1 TAAATTA
*
232783 TTAATTA
1 TAAATTA
*
232790 TATA-TA
1 TAAATTA
*
232796 TTAATTA
1 TAAATTA
232803 TAAATTA
1 TAAATTA
*
232810 TAAATAA
1 TAAATTA
232817 TAAATT
1 TAAATT
232823 GGATAATTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
6 14 0.35
7 26 0.65
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TAAATTA
Found at i:232810 original size:20 final size:20
Alignment explanation
Indices: 232764--232821 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
232754 AATTATTATT
232764 TAAATTAT-TAATATAAATA
1 TAAATTATATAATATAAATA
* *
232783 TTAATTATAT-ATATTAATTA
1 TAAATTATATAATA-TAAATA
232803 TAAATTATA-AATAATAAAT
1 TAAATTATATAAT-ATAAAT
232822 TGGATAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
19 10 0.32
20 20 0.65
21 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATTATATAATATAAATA
Found at i:233121 original size:16 final size:15
Alignment explanation
Indices: 233095--233124 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
233085 ATTTGAATTT
233095 ATTATTTAATTTATA
1 ATTATTTAATTTATA
233110 ATTATATTAATTTAT
1 ATTAT-TTAATTTAT
233125 TATAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTATTTAATTTATA
Found at i:233210 original size:21 final size:21
Alignment explanation
Indices: 233185--233225 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
233175 TCTCTTATTA
*
233185 TTGAACTAATATAAATTAATT
1 TTGAAATAATATAAATTAATT
*
233206 TTGAAATATTATAAATTAAT
1 TTGAAATAATATAAATTAAT
233226 ATATAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (21 bp):
TTGAAATAATATAAATTAATT
Found at i:233783 original size:11 final size:11
Alignment explanation
Indices: 233761--233822 Score: 58
Period size: 11 Copynumber: 5.8 Consensus size: 11
233751 ATTAATTGTA
*
233761 ATTATATCAAT
1 ATTATATTAAT
*
233772 ATTACATTAAT
1 ATTATATTAAT
*
233783 AATTATATTATT
1 -ATTATATTAAT
233795 A-T-TATT-AT
1 ATTATATTAAT
233803 ATTATATTAAT
1 ATTATATTAAT
*
233814 AATATATTA
1 ATTATATTA
233823 TACAAAATAC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
8 2 0.05
9 5 0.12
10 5 0.12
11 20 0.49
12 9 0.22
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTATATTAAT
Found at i:233818 original size:14 final size:15
Alignment explanation
Indices: 233777--233823 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
233767 TCAATATTAC
*
233777 ATTAATAATTATATT
1 ATTATTAATTATATT
233792 ATTATT-ATTATATT
1 ATTATTAATTATATT
*
233806 A-TATTAATAATA-T
1 ATTATTAATTATATT
233819 ATTAT
1 ATTAT
233824 ACAAAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 6 0.21
14 17 0.61
15 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATTAATTATATT
Found at i:233871 original size:16 final size:17
Alignment explanation
Indices: 233850--233882 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
233840 TAACGATTTG
233850 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
233866 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
233883 TTGAACGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:234256 original size:18 final size:19
Alignment explanation
Indices: 234233--234293 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 19
234223 TAATAGTTAA
234233 TAAATTAAATATAAT-AGT
1 TAAATTAAATATAATAAGT
234251 TAAATT--ATATAATAAGT
1 TAAATTAAATATAATAAGT
234268 TAAATTATAATAATTAATAAG-
1 TAAATTA-AAT-A-TAATAAGT
234289 TAAAT
1 TAAAT
234294 GTTTATCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 7 0.19
17 9 0.24
18 6 0.16
20 2 0.05
21 6 0.16
22 7 0.19
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAATTAAATATAATAAGT
Found at i:234380 original size:17 final size:18
Alignment explanation
Indices: 234358--234403 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
234348 AAATATTATA
*
234358 TAATTATATTATTAAT-T
1 TAATTATATTAATAATAT
234375 TAATTATA-TAATAATAT
1 TAATTATATTAATAATAT
*
234392 TAATTTTATTAA
1 TAATTATATTAA
234404 ACAATTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.24
17 16 0.64
18 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTATATTAATAATAT
Found at i:234402 original size:22 final size:25
Alignment explanation
Indices: 234351--234402 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
234341 ATATAATAAA
234351 TATTATATAATTATATTATTAATTT
1 TATTATATAATTATATTATTAATTT
*
234376 AATTATATAA-TA-A-TATTAATTT
1 TATTATATAATTATATTATTAATTT
234398 TATTA
1 TATTA
234403 AACAATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.52
23 1 0.04
24 2 0.08
25 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTATATAATTATATTATTAATTT
Found at i:235036 original size:21 final size:21
Alignment explanation
Indices: 235012--235051 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
235002 AATTAATTAT
235012 AAATATTAA-ATTTACTAATTG
1 AAATA-TAATATTTACTAATTG
*
235033 AAATATAATTTTTACTAAT
1 AAATATAATATTTACTAAT
235052 AATTGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
AAATATAATATTTACTAATTG
Done.