Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 29 of 64
Found at i:4478526 original size:5 final size:5
Alignment explanation
Indices: 4478518--4478565 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
4478508 AAAACTTAAG
* *
4478518 AAAAT AAAAAT AAAAG AAAAT AAAAT -CAA- AAAAT AAAAT AAAAT AAAA
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
4478566 ATGGAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
4 4 0.11
5 27 0.75
6 5 0.14
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:4478555 original size:18 final size:17
Alignment explanation
Indices: 4478515--4478566 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 17
4478505 ATAAAAACTT
*
4478515 AAGAAAATAAAA-ATAA
1 AAGAAAATAAAATAAAA
4478531 AAGAAAATAAAATCAAAA
1 AAGAAAATAAAAT-AAAA
*
4478549 AATAAAATAAAATAAAA
1 AAGAAAATAAAATAAAA
4478566 A
1 A
4478567 TGGAAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
16 12 0.38
17 5 0.16
18 15 0.47
ACGTcount: A:0.81, C:0.02, G:0.04, T:0.13
Consensus pattern (17 bp):
AAGAAAATAAAATAAAA
Found at i:4478567 original size:16 final size:16
Alignment explanation
Indices: 4478502--4478565 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
4478492 AAATGGAAAT
*
4478502 AAAATAAAAACT-TAAG
1 AAAATAAAAA-TAAAAG
4478518 AAAATAAAAATAAAAG
1 AAAATAAAAATAAAAG
* *
4478534 AAAATAAAATCAAAAAAT
1 AAAATAAAA--ATAAAAG
4478552 AAAAT-AAAATAAAA
1 AAAATAAAAATAAAA
4478566 ATGGAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 6 0.15
16 22 0.54
17 3 0.07
18 10 0.24
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAATAAAAATAAAAG
Found at i:4479474 original size:3 final size:3
Alignment explanation
Indices: 4479468--4479525 Score: 71
Period size: 3 Copynumber: 19.3 Consensus size: 3
4479458 TAAAAAAATG
* * * *
4479468 ATA ATA ATA ATA ATT TTG ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
4479516 ATA CTA ATA A
1 ATA ATA ATA A
4479526 ACTATCTACA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:4480252 original size:86 final size:86
Alignment explanation
Indices: 4480104--4480319 Score: 247
Period size: 86 Copynumber: 2.5 Consensus size: 86
4480094 ACAAAATTGC
* * *
4480104 AAAGATTTAAGATTCACAAAGG-TTTTCCAGATTCACAAGAATGAAAGATTCATAAGACTCCAAG
1 AAAGATTTAAGATTCAC-AAGGACTTT-CAGATTCACAAGAAAGAAAGATTCACAAGACTCCAAG
* *
4480168 ATTCGCAGAGGTTCTAGATTCAT
64 ATTCGCAAAGGTTCTAAATTCAT
* * * * * * *
4480191 AAAGATTTTAGATTTACAAGGACTTTCAGATTCACAAGAAAGATAGATTTACAATATTCCAAGTT
1 AAAGATTTAAGATTCACAAGGACTTTCAGATTCACAAGAAAGAAAGATTCACAAGACTCCAAGAT
*
4480256 TTGCAAAGGTTCTAAATTCAT
66 TCGCAAAGGTTCTAAATTCAT
* * *
4480277 AAAGATTCCAAG-TTCACAGGGACTTTCAGATTCGCAAGAAAGA
1 AAAGATT-TAAGATTCACAAGGACTTTCAGATTCACAAGAAAGA
4480320 CAAATTTGCA
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
86 89 0.82
87 20 0.18
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (86 bp):
AAAGATTTAAGATTCACAAGGACTTTCAGATTCACAAGAAAGAAAGATTCACAAGACTCCAAGAT
TCGCAAAGGTTCTAAATTCAT
Found at i:4480349 original size:86 final size:86
Alignment explanation
Indices: 4480104--4480359 Score: 239
Period size: 86 Copynumber: 3.0 Consensus size: 86
4480094 ACAAAATTGC
* * * * * *
4480104 AAAGATTTAAGATTCACAAAGG-TTTTCCAGATTCACAAGAATGA-AAGATTCATAAGACTCCAA
1 AAAGATTCAAGATTCAC-AAGGACTTT-CAGATTCACAAGAAAGACAA-ATTTACAAGATTCCAA
* * * *
4480167 GATTCGCAGAGGTTCTAGATTCAT
63 GTTTCACAAAGGTTCTAAATTCAT
** * * * *
4480191 AAAGATTTTAGATTTACAAGGACTTTCAGATTCACAAGAAAGATAGATTTACAATATTCCAAGTT
1 AAAGATTCAAGATTCACAAGGACTTTCAGATTCACAAGAAAGACAAATTTACAAGATTCCAAGTT
**
4480256 TTGCAAAGGTTCTAAATTCAT
66 TCACAAAGGTTCTAAATTCAT
* * * *
4480277 AAAGATTCCAAG-TTCACAGGGACTTTCAGATTCGCAAGAAAGACAAATTTGCAAGATTTCAAGT
1 AAAGATT-CAAGATTCACAAGGACTTTCAGATTCACAAGAAAGACAAATTTACAAGATTCCAAGT
* *
4480341 TTCACAAAGATTCCAAATT
65 TTCACAAAGGTTCTAAATT
4480360 TGTAAGAACT
Statistics
Matches: 139, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
86 118 0.85
87 21 0.15
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (86 bp):
AAAGATTCAAGATTCACAAGGACTTTCAGATTCACAAGAAAGACAAATTTACAAGATTCCAAGTT
TCACAAAGGTTCTAAATTCAT
Found at i:4480531 original size:69 final size:67
Alignment explanation
Indices: 4480458--4480668 Score: 172
Period size: 69 Copynumber: 3.1 Consensus size: 67
4480448 CAAGAAAGAA
* * *
4480458 AGATTTATAAGATTTTAAGTTTCGTAAAGGTTCTAGATTCGTAAAGATGTAAGGTTCGCAAAGAC
1 AGATTCATAAGATTTAAAGTTTC--AAAGGTTCTAGATTCGTAAAGATGCAAGGTTCGCAAAGAC
4480523 TTTC
64 TTTC
* *** * * * * * * * *
4480527 AGATTCATAAAAAAGAAAGATTCACAAGATTTCAAGTTTTGCAAAGGTGCAAGGTTCGCAAAGAT
1 AGATTCATAAGATTTAAAGTTTCA-AAG-GTTCTAGATTCGTAAAGATGCAAGGTTCGCAAAGAC
*
4480592 TTTT
64 TTTC
* * * * *
4480596 AGATTCGTAAGATTTCAAGTTTCACAAAGGTTCTAGATTCAT-AAGATGCAAGGTTCACAAGGAC
1 AGATTCATAAGATTTAAAGTTT--CAAAGGTTCTAGATTCGTAAAGATGCAAGGTTCGCAAAGAC
4480660 TTTC
64 TTTC
4480664 AGATT
1 AGATT
4480669 TGTTAAAGAA
Statistics
Matches: 104, Mismatches: 34, Indels: 9
0.71 0.23 0.06
Matches are distributed among these distances:
67 1 0.01
68 29 0.28
69 69 0.66
70 3 0.03
71 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (67 bp):
AGATTCATAAGATTTAAAGTTTCAAAGGTTCTAGATTCGTAAAGATGCAAGGTTCGCAAAGACTT
TC
Found at i:4480590 original size:86 final size:86
Alignment explanation
Indices: 4480422--4480591 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 86
4480412 GTAAAAGTGC
* * * * *
4480422 AAGGTTCACAAGAACTTTCAAATTCACAAGAAAGAAAGATTTATAAGATTTTAAGTTTCGTAAAG
1 AAGGTTCACAAGAACTTTCAAATTCACAAAAAAGAAAGATTCACAAGATTTCAAGTTTCGCAAAG
* * *
4480487 GTTCTAGATTCGTAAAGATGT
66 GTGCAAGATTCGCAAAGATGT
* * * *
4480508 AAGGTTCGCAA-AGACTTTCAGATTCATAAAAAAGAAAGATTCACAAGATTTCAAGTTTTGCAAA
1 AAGGTTCACAAGA-ACTTTCAAATTCACAAAAAAGAAAGATTCACAAGATTTCAAGTTTCGCAAA
*
4480572 GGTGCAAGGTTCGCAAAGAT
65 GGTGCAAGATTCGCAAAGAT
4480592 TTTTAGATTC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
85 1 0.01
86 69 0.99
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (86 bp):
AAGGTTCACAAGAACTTTCAAATTCACAAAAAAGAAAGATTCACAAGATTTCAAGTTTCGCAAAG
GTGCAAGATTCGCAAAGATGT
Found at i:4480600 original size:223 final size:222
Alignment explanation
Indices: 4480206--4480607 Score: 470
Period size: 223 Copynumber: 1.8 Consensus size: 222
4480196 TTTTAGATTT
* * * * *
4480206 ACAAGGACTTTCAGATTCACAAGAAAGATAGATTTACAATATTCCAAGTTTTGCAAAGGTTCTAA
1 ACAAGAACTTTCAAATTCACAAGAAAGAAAGATTTACAAGATTCCAAGTTTCGCAAAGGTTCTAA
** * * **
4480271 ATTCATAAAGATTCCAAGTTCACAGGGACTTTCAGATTCGCAAGAAAGACAAATTTGCAAGATTT
66 ATTCATAAAGATT-CAAGTTCACAAAGACTTTCAGATTCACAAAAAAGACAAATTCACAAGATTT
* * * *
4480336 CAAGTTTCACAAAGATTCCAAATTTGTAAGAACTTTTAGATTTGTAAGAAGATAGATTCACAAGA
130 CAAGTTTCACAAAGAGTCCAAATTCGAAAGAACTTTTAGATTCGTAAGAAGATAGATTCACAAGA
4480401 TTTCAAGTTTTGTAAAAGTGCAAGGTTC
195 TTTCAAGTTTTGTAAAAGTGCAAGGTTC
* ** * *
4480429 ACAAGAACTTTCAAATTCACAAGAAAGAAAGATTTATAAGATTTTAAGTTTCGTAAAGGTTCTAG
1 ACAAGAACTTTCAAATTCACAAGAAAGAAAGATTTACAAGATTCCAAGTTTCGCAAAGGTTCTAA
* * *
4480494 ATTCGTAAAGATGT-AAGGTTCGCAAAGACTTTCAGATTCATAAAAAAGA-AAGATTCACAAGAT
66 ATTCATAAAGAT-TCAA-GTTCACAAAGACTTTCAGATTCACAAAAAAGACAA-ATTCACAAGAT
** * * *
4480557 TTCAAGTTTTGCAAAG-GTGCAAGGTTCGCAAAG-ATTTTTAGATTCGTAAGA
128 TTCAAGTTTCACAAAGAGTCCAA-ATTCG-AAAGAACTTTTAGATTCGTAAGA
4480608 TTTCAAGTTT
Statistics
Matches: 146, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
222 8 0.05
223 134 0.92
224 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (222 bp):
ACAAGAACTTTCAAATTCACAAGAAAGAAAGATTTACAAGATTCCAAGTTTCGCAAAGGTTCTAA
ATTCATAAAGATTCAAGTTCACAAAGACTTTCAGATTCACAAAAAAGACAAATTCACAAGATTTC
AAGTTTCACAAAGAGTCCAAATTCGAAAGAACTTTTAGATTCGTAAGAAGATAGATTCACAAGAT
TTCAAGTTTTGTAAAAGTGCAAGGTTC
Found at i:4480710 original size:138 final size:138
Alignment explanation
Indices: 4480465--4480745 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 138
4480455 GAAAGATTTA
* ** * * *
4480465 TAAGATTTTAAGTTTCGTAAAGGTTCTAGATTCGTAAAGATGTAAGGTTCGCAAAGACTTTCAGA
1 TAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAAAGATGCAAGGTTCACAAAGACTTTCAGA
**
4480530 TTCATAAAAAAGAAAGATTCACAAGATTTCAAGTTTTGCAAAGGTGCAAGGTTCGCAAAG-ATTT
66 TTCATAAAAAAGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTGCAAGGTTCG-AAAGAATTT
4480594 TTAGATTCG
130 TTAGATTCG
*
4480603 TAAGATTTCAAGTTTCACAAAGGTTCTAGATTCAT-AAGATGCAAGGTTCACAAGGACTTTCAGA
1 TAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAAAGATGCAAGGTTCACAAAGACTTTCAGA
** ** *
4480667 TTTGTTAAAGAAA-AAAGATTCGTAAGATTTCAAGTTTCACAAAGGTGCAAGGTTCGTAAGAATT
66 -TTCATAAA-AAAGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTGCAAGGTTCGAAAGAATT
4480731 TTTAGATTCG
129 TTTAGATTCG
*
4480741 CAAGA
1 TAAGA
4480746 AAGAAAGATT
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
137 29 0.23
138 93 0.74
139 3 0.02
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (138 bp):
TAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAAAGATGCAAGGTTCACAAAGACTTTCAGA
TTCATAAAAAAGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTGCAAGGTTCGAAAGAATTTT
TAGATTCG
Found at i:4480764 original size:69 final size:68
Alignment explanation
Indices: 4480674--4480841 Score: 223
Period size: 69 Copynumber: 2.5 Consensus size: 68
4480664 AGATTTGTTA
* * * * *
4480674 AAGAAAAAAGATTCGTAAGATTTCAAGTTTCACAAAGGTGCAAGGTTCGT-AAGAATTTTTAGAT
1 AAGAAAAAAGATTTGTAAGATTTCAAGTTTCACAAAGGTACAAGATTCGTAAAG-ACTTTCAGAT
*
4480738 TCGC
65 TCAC
**
4480742 AAGAAAGAAAGATTTGTAAGATTTCAAGTTTCGTAAAGGTACAAGATTCGTAAAGACTTTCAGAT
1 AAGAAA-AAAGATTTGTAAGATTTCAAGTTTCACAAAGGTACAAGATTCGTAAAGACTTTCAGAT
4480807 TCAC
65 TCAC
4480811 AAGAAAAAA-ATTGTGTAAGATTTCAAGTTTC
1 AAGAAAAAAGATT-TGTAAGATTTCAAGTTTC
4480842 GTAAAAGTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
67 3 0.03
68 27 0.30
69 56 0.63
70 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (68 bp):
AAGAAAAAAGATTTGTAAGATTTCAAGTTTCACAAAGGTACAAGATTCGTAAAGACTTTCAGATT
CAC
Found at i:4481618 original size:28 final size:28
Alignment explanation
Indices: 4481587--4481673 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 28
4481577 TCAGTTTAAG
4481587 TCTTCCTTTTTCCTCCTTTGTC-TTTTT-T
1 TCTTCCTTTTT--TCCTTTGTCTTTTTTCT
* * *
4481615 TCTTTCTTTTTTCTTTTTTCTTTTTTCT
1 TCTTCCTTTTTTCCTTTGTCTTTTTTCT
* *
4481643 TCTTCCTTTTTTACTTTTTTTCTTTTTTCT
1 TCTTCCTTTTTT-C-CTTTGTCTTTTTTCT
4481673 T
1 T
4481674 TTTGGTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
26 7 0.14
27 5 0.10
28 22 0.43
29 1 0.02
30 16 0.31
ACGTcount: A:0.01, C:0.22, G:0.01, T:0.76
Consensus pattern (28 bp):
TCTTCCTTTTTTCCTTTGTCTTTTTTCT
Found at i:4481623 original size:18 final size:18
Alignment explanation
Indices: 4481610--4481674 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
4481600 TCCTTTGTCT
*
4481610 TTTTTTCTTTCTTTTTTC
1 TTTTTTCTTTCTTTTCTC
*
4481628 TTTTTTCTTTTTTCTTCTTCC
1 TTTTTTCTTTCTT-TTC-T-C
4481649 TTTTTTAC-TT-TTTT-TC
1 TTTTTT-CTTTCTTTTCTC
4481665 TTTTTTCTTT
1 TTTTTTCTTT
4481675 TTGGTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
15 1 0.03
16 9 0.22
17 1 0.03
18 12 0.30
19 4 0.10
20 3 0.08
21 9 0.22
22 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTCTTTCTTTTCTC
Found at i:4481629 original size:7 final size:7
Alignment explanation
Indices: 4481617--4481695 Score: 97
Period size: 7 Copynumber: 11.1 Consensus size: 7
4481607 TCTTTTTTTC
4481617 TTTCTTT
1 TTTCTTT
4481624 TTTCTTT
1 TTTCTTT
4481631 TTTCTTT
1 TTTCTTT
*
4481638 TTTCTTC
1 TTTCTTT
*
4481645 TTCCTTT
1 TTTCTTT
4481652 TTTACTTTT
1 TTT-C-TTT
4481661 TTTCTTT
1 TTTCTTT
4481668 TTTCTTT
1 TTTCTTT
**
4481675 TTGGTTT
1 TTTCTTT
4481682 TTTCTTT
1 TTTCTTT
4481689 TTT-TTT
1 TTTCTTT
4481695 T
1 T
4481696 GTACACCTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
6 4 0.06
7 50 0.81
8 2 0.03
9 6 0.10
ACGTcount: A:0.01, C:0.14, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTCTTT
Found at i:4481672 original size:44 final size:44
Alignment explanation
Indices: 4481612--4481726 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
4481602 CTTTGTCTTT
4481612 TTTTCTTTCTTTTTTCTTTTTTCTTTTTTCTTCTTCCTTTTT-TAC-
1 TTTT-TTTCTTTTTTCTTTTTTCTTTTTTCTT-TT-CTTTTTGTACA
** *
4481657 TTTTTTTCTTTTTTCTTTTTGGTTTTTTCTTTTTTTTTTGTACA
1 TTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTCTTTTTGTACA
** *
4481701 CCTTTTTCTTATTTCTTTTTCTCTTT
1 TTTTTTTCTTTTTTCTTTTT-TCTTT
4481727 CTCTTTTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 5 0.08
43 5 0.08
44 42 0.71
45 7 0.12
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (44 bp):
TTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTCTTTTTGTACA
Found at i:4481689 original size:37 final size:37
Alignment explanation
Indices: 4481621--4481691 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
4481611 TTTTTCTTTC
*
4481621 TTTTTTCTTTTTTCTTTTTTCTTCTTCCTTTTTTACT
1 TTTTTTCTTTTTTCTTTTTGCTTCTTCCTTTTTTACT
* * *
4481658 TTTTTTCTTTTTTCTTTTTGGTTTTTTCTTTTTT
1 TTTTTTCTTTTTTCTTTTTGCTTCTTCCTTTTTT
4481692 TTTTGTACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.01, C:0.14, G:0.03, T:0.82
Consensus pattern (37 bp):
TTTTTTCTTTTTTCTTTTTGCTTCTTCCTTTTTTACT
Found at i:4481693 original size:30 final size:29
Alignment explanation
Indices: 4481636--4481692 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
4481626 TCTTTTTTCT
4481636 TTTTTCTTCTTCCTTTTTTACTTTTTTTCT
1 TTTTTCTTCTTCCTTTTTT-CTTTTTTTCT
* **
4481666 TTTTTCTTTTTGGTTTTTTCTTTTTTT
1 TTTTTCTTCTTCCTTTTTTCTTTTTTT
4481693 TTTGTACACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.81
Consensus pattern (29 bp):
TTTTTCTTCTTCCTTTTTTCTTTTTTTCT
Found at i:4484622 original size:15 final size:15
Alignment explanation
Indices: 4484602--4484633 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
4484592 ATTTTGAGCT
4484602 AACTATAAAGGGTGG
1 AACTATAAAGGGTGG
4484617 AACTATAAAGGGTGG
1 AACTATAAAGGGTGG
4484632 AA
1 AA
4484634 AGACATGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (15 bp):
AACTATAAAGGGTGG
Found at i:4485902 original size:6 final size:6
Alignment explanation
Indices: 4485889--4485950 Score: 56
Period size: 6 Copynumber: 9.7 Consensus size: 6
4485879 AAAAAAATGG
4485889 AAAT-A AAATAA AAACTTAA GAAAATAA AAATAAA AAATAA AAATAA AAATGAA
1 AAATAA AAATAA AAA--TAA -A-AATAA AAAT-AA AAATAA AAATAA AAAT-AA
4485942 AAA-AA AAAT
1 AAATAA AAAT
4485951 CTTGTGATCA
Statistics
Matches: 49, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
5 9 0.18
6 19 0.39
7 12 0.24
8 6 0.12
9 1 0.02
10 2 0.04
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:4485927 original size:13 final size:13
Alignment explanation
Indices: 4485893--4485950 Score: 66
Period size: 12 Copynumber: 4.4 Consensus size: 13
4485883 AAATGGAAAT
4485893 AAAATAAAAACTTAA
1 AAAATAAAAA--TAA
4485908 GAAAATAAAAATAA
1 -AAAATAAAAATAA
4485922 AAAATAAAAAT-A
1 AAAATAAAAATAA
*
4485934 AAAATGAAAA-AA
1 AAAATAAAAATAA
4485946 AAAAT
1 AAAAT
4485951 CTTGTGATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
12 16 0.40
13 11 0.28
14 3 0.08
16 10 0.25
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:4485933 original size:19 final size:18
Alignment explanation
Indices: 4485873--4485950 Score: 68
Period size: 19 Copynumber: 3.9 Consensus size: 18
4485863 TAAAACTAGC
4485873 AAAATAAAAAAAATGGAAAT-
1 AAAATAAAAAAAA---AAATA
4485893 AAAATAAAAACTTAAGAAAATA
1 AAAATAAAAA---AA-AAAATA
4485915 AAAATAAAAAATAAAAATA
1 AAAATAAAAAA-AAAAATA
*
4485934 AAAATGAAAAAAAAAAT
1 AAAATAAAAAAAAAAAT
4485951 CTTGTGATCA
Statistics
Matches: 51, Mismatches: 1, Indels: 14
0.77 0.02 0.21
Matches are distributed among these distances:
18 6 0.12
19 17 0.33
20 11 0.22
21 4 0.08
22 10 0.20
23 2 0.04
24 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAATAAAAAAAAAAATA
Found at i:4486823 original size:3 final size:3
Alignment explanation
Indices: 4486817--4486851 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4486807 AAAAAAAGAA
*
4486817 AAT AAT AAT AAT AAT AAT AAT AAT AAT ACT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4486852 ACTATGTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4493495 original size:13 final size:13
Alignment explanation
Indices: 4493479--4493503 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4493469 TGTTCTCACT
4493479 TTTTATTCTTTTC
1 TTTTATTCTTTTC
4493492 TTTTATTCTTTT
1 TTTTATTCTTTT
4493504 TTCATTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTCTTTTC
Found at i:4493513 original size:7 final size:7
Alignment explanation
Indices: 4493487--4493548 Score: 97
Period size: 7 Copynumber: 8.7 Consensus size: 7
4493477 CTTTTTATTC
*
4493487 TTTTCTT
1 TTTTCAT
*
4493494 TTATTCTT
1 TT-TTCAT
4493502 TTTTCAT
1 TTTTCAT
4493509 TTTTCAT
1 TTTTCAT
4493516 TTTTCAT
1 TTTTCAT
4493523 TTTTCAT
1 TTTTCAT
4493530 TTTTCAT
1 TTTTCAT
4493537 TTTTCAT
1 TTTTCAT
4493544 TTTTC
1 TTTTC
4493549 TCTTTTCTCT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
7 46 0.87
8 7 0.13
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTCAT
Found at i:4495726 original size:19 final size:19
Alignment explanation
Indices: 4495672--4495748 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 19
4495662 TTGGGTTGGA
4495672 TTTAGGGTTTAATGTTT-GG
1 TTTAGGG-TTAATGTTTAGG
4495691 TTTAGGGTTGAGA-GTTTAAGG
1 TTTAGGGTT-A-ATGTTT-AGG
4495712 TTTAGGGTT-ATGTTTAGTG
1 TTTAGGGTTAATGTTTAG-G
*
4495731 TATAGGGTTAAT-TTTAGG
1 TTTAGGGTTAATGTTTAGG
4495749 GTTTGAGCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 15
0.76 0.02 0.23
Matches are distributed among these distances:
18 6 0.12
19 30 0.60
20 3 0.06
21 11 0.22
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (19 bp):
TTTAGGGTTAATGTTTAGG
Found at i:4496000 original size:13 final size:13
Alignment explanation
Indices: 4495940--4496000 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
4495930 TTTACATATT
*
4495940 TTTAGGGTTTTGA
1 TTTAGGGTTTTGG
* **
4495953 TTTAAGGTTAGGG
1 TTTAGGGTTTTGG
*
4495966 TTTAGTG-TTTGG
1 TTTAGGGTTTTGG
*
4495978 TTT-TGGTTTTGG
1 TTTAGGGTTTTGG
4495990 TTTAGGGTTTT
1 TTTAGGGTTTT
4496001 TCTTGGGACT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
11 1 0.03
12 14 0.40
13 20 0.57
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (13 bp):
TTTAGGGTTTTGG
Found at i:4496564 original size:17 final size:16
Alignment explanation
Indices: 4496541--4496590 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
4496531 TAAGAACTAC
4496541 ATGTATGAAAAATAAA
1 ATGTATGAAAAATAAA
*
4496557 ATTGTATGATGAAA-AAA
1 A-TGTATGA-AAAATAAA
4496574 ATG-ATGAAAGAATAAA
1 ATGTATGAAA-AATAAA
4496590 A
1 A
4496591 GAAATAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 1 0.04
15 6 0.21
16 7 0.25
17 11 0.39
18 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (16 bp):
ATGTATGAAAAATAAA
Found at i:4497530 original size:142 final size:142
Alignment explanation
Indices: 4497264--4497564 Score: 344
Period size: 142 Copynumber: 2.1 Consensus size: 142
4497254 TCCTAAAGAG
* * *
4497264 TTTTAGTAATTTCACTCATTTTAAAGTGCAATAAGATTTTTAATGCATTAAAATTCATGAAATAA
1 TTTTAGTAATTTCACTCATTTTAAAGTACAATAAAATTTTTAATGCATAAAAATTCATGAAATAA
* * ** *
4497329 TATTTAAATATGATATGGAATGCTTAACAAAAAATGACCTTAAAAAGGTTAAATTACGAAAATG-
66 TATTTAAAAATGATATGAAATGCTTAACAAAAAATGACCTTAAAAAGGCCAAATGACGAAAATGC
*
4497393 CCTT-TATAAGGCA
131 CCTTAAATAA--CA
* *
4497406 TTTTAGTAATTTCAC-CATTTTGAAGTACAATCAAAATTTTTAATGCATAAAAATTCATGCAATA
1 TTTTAGTAATTTCACTCATTTTAAAGTACAAT-AAAATTTTTAATGCATAAAAATTCATGAAATA
* ** ** *
4497470 ATATTTAAAAATGATCT-AAAGTTTTTATGAAAAATTGA-CTCTAAGAAA-GCCAAATGACGAAA
65 ATATTTAAAAATGATATGAAA-TGCTTAACAAAAAATGACCT-TAA-AAAGGCCAAATGACGAAA
4497532 ATGCCCTTAAATAACA
127 ATGCCCTTAAATAACA
*
4497548 TTTTTGTAATTTCACTC
1 TTTTAGTAATTTCACTC
4497565 TTCTTGAGGT
Statistics
Matches: 134, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
141 18 0.13
142 104 0.78
143 8 0.06
144 4 0.03
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (142 bp):
TTTTAGTAATTTCACTCATTTTAAAGTACAATAAAATTTTTAATGCATAAAAATTCATGAAATAA
TATTTAAAAATGATATGAAATGCTTAACAAAAAATGACCTTAAAAAGGCCAAATGACGAAAATGC
CCTTAAATAACA
Found at i:4499152 original size:17 final size:18
Alignment explanation
Indices: 4499123--4499173 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
4499113 TTAAATTAAA
4499123 ATATTAA-ATAATAATTT
1 ATATTAATATAATAATTT
4499140 -TATTAATATAATACATTT
1 ATATTAATATAATA-ATTT
*
4499158 ATATAAATATAA-AATT
1 ATATTAATATAATAATT
4499174 AAATAACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 6 0.20
17 9 0.30
18 5 0.17
19 10 0.33
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTAATATAATAATTT
Found at i:4502682 original size:52 final size:52
Alignment explanation
Indices: 4502597--4502720 Score: 178
Period size: 52 Copynumber: 2.4 Consensus size: 52
4502587 ATAACCATAT
* * *
4502597 AAACTTGCCCATTAAGAATCTTTCTCCTCTTAGAATTCTTCTCCTGTAAGTC
1 AAACTTGCCTATTAAGAATCTGTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
* *
4502649 AAACTTGCCTATTAAGAATCTCGT-TCCTTTTAGAATTCTTCTCTTGCAAGTC
1 AAACTTGCCTATTAAGAATCT-GTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
*
4502701 AAACTTACCTATTAAGAATC
1 AAACTTGCCTATTAAGAATC
4502721 CTTTTCTCTT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 64 0.98
53 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (52 bp):
AAACTTGCCTATTAAGAATCTGTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
Found at i:4502801 original size:22 final size:22
Alignment explanation
Indices: 4502776--4502818 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4502766 GCAATATCTG
4502776 ACAAATC-CTAAACAAATCTCTA
1 ACAAATCTC-AAACAAATCTCTA
4502798 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
4502819 TATGGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:4502816 original size:11 final size:11
Alignment explanation
Indices: 4502776--4502817 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
4502766 GCAATATCTG
4502776 ACAAATC-CTAA
1 ACAAATCTC-AA
*
4502787 ACAAATCTCTA
1 ACAAATCTCAA
4502798 ACAAATCTCAA
1 ACAAATCTCAA
4502809 ACAAATCTC
1 ACAAATCTC
4502818 TTATGGGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 27 0.96
12 1 0.04
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:4503104 original size:25 final size:25
Alignment explanation
Indices: 4503028--4503118 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
4503018 TAAGCTTACT
* *
4503028 TCTTCTCATATCTCAAACCA--AGC
1 TCTTCCCATATCTCGAACCATCAGC
* ** **
4503051 TCTTCCAATATCTCGAACTGTCAAT
1 TCTTCCCATATCTCGAACCATCAGC
*
4503076 TCTTCCCATGTCTCGAACCATCAGC
1 TCTTCCCATATCTCGAACCATCAGC
* *
4503101 TCTTCCCACATCTTGAAC
1 TCTTCCCATATCTCGAAC
4503119 ATTTGACTCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
23 15 0.30
25 35 0.70
ACGTcount: A:0.25, C:0.35, G:0.08, T:0.32
Consensus pattern (25 bp):
TCTTCCCATATCTCGAACCATCAGC
Found at i:4503182 original size:31 final size:31
Alignment explanation
Indices: 4503144--4503275 Score: 221
Period size: 31 Copynumber: 4.3 Consensus size: 31
4503134 CGTTTCGAAC
*
4503144 TTGTTGGGGATCACCACGGCTCTGATACCAT
1 TTGTTGGGGATCACCACAGCTCTGATACCAT
4503175 TTGTTGGGGATCACCACAGCTCTGATACCAT
1 TTGTTGGGGATCACCACAGCTCTGATACCAT
*
4503206 TTGTTGAGGAAT-ACCACAGCTCTGATACCAT
1 TTGTTG-GGGATCACCACAGCTCTGATACCAT
*
4503237 TTGTTGGGGAACACCACAGCTCTGATACCAT
1 TTGTTGGGGATCACCACAGCTCTGATACCAT
4503268 TTGTTGGG
1 TTGTTGGG
4503276 CTAAAAGCCT
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
30 3 0.03
31 88 0.93
32 4 0.04
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (31 bp):
TTGTTGGGGATCACCACAGCTCTGATACCAT
Found at i:4503846 original size:52 final size:52
Alignment explanation
Indices: 4503761--4503884 Score: 178
Period size: 52 Copynumber: 2.4 Consensus size: 52
4503751 ATAACCATAT
* * *
4503761 AAACTTGCCCATTAAGAATCTTTCTCCTCTTAGAATTCTTCTCCTGTAAGTC
1 AAACTTGCCTATTAAGAATCTGTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
* *
4503813 AAACTTGCCTATTAAGAATCTCGT-TCCTTTTAGAATTCTTCTCTTGCAAGTC
1 AAACTTGCCTATTAAGAATCT-GTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
*
4503865 AAACTTACCTATTAAGAATC
1 AAACTTGCCTATTAAGAATC
4503885 CTTTTCTCTT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 64 0.98
53 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (52 bp):
AAACTTGCCTATTAAGAATCTGTCTCCTCTTAGAATTCTTCTCCTGCAAGTC
Found at i:4503965 original size:22 final size:22
Alignment explanation
Indices: 4503940--4503982 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4503930 GCAATATCTG
4503940 ACAAATC-CTAAACAAATCTCTA
1 ACAAATCTC-AAACAAATCTCTA
4503962 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
4503983 TATGGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:4503980 original size:11 final size:11
Alignment explanation
Indices: 4503940--4503981 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
4503930 GCAATATCTG
4503940 ACAAATC-CTAA
1 ACAAATCTC-AA
*
4503951 ACAAATCTCTA
1 ACAAATCTCAA
4503962 ACAAATCTCAA
1 ACAAATCTCAA
4503973 ACAAATCTC
1 ACAAATCTC
4503982 TTATGGGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 27 0.96
12 1 0.04
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:4504758 original size:17 final size:17
Alignment explanation
Indices: 4504738--4504775 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
4504728 GGTTAATATT
4504738 TATTTAAA-TATTTTTTA
1 TATTTAAATTA-TTTTTA
*
4504755 TATTTTAATTATTTTTA
1 TATTTAAATTATTTTTA
4504772 TATT
1 TATT
4504776 AATGTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTAAATTATTTTTA
Found at i:4506681 original size:13 final size:13
Alignment explanation
Indices: 4506640--4506682 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
4506630 TTTTTACTCT
4506640 TATAATGTATCAAA
1 TATAAT-TATCAAA
*
4506654 TATAAATTCTC-AA
1 TAT-AATTATCAAA
4506667 TATAATTATCAAA
1 TATAATTATCAAA
4506680 TAT
1 TAT
4506683 CAATATAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 6 0.24
13 10 0.40
14 6 0.24
15 3 0.12
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (13 bp):
TATAATTATCAAA
Found at i:4509129 original size:33 final size:33
Alignment explanation
Indices: 4509068--4509132 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
4509058 CCTTTGTTCT
* *
4509068 TGATACATTTGAGGTAGAGAATATATTTGAGGA
1 TGATACATTTGAGGTAAAGAATACATTTGAGGA
*
4509101 TGATACATTTGTGGTAAATG-ATACATTTGAGG
1 TGATACATTTGAGGTAAA-GAATACATTTGAGG
4509133 TGGATAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (33 bp):
TGATACATTTGAGGTAAAGAATACATTTGAGGA
Found at i:4509490 original size:6 final size:6
Alignment explanation
Indices: 4509479--4509521 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
4509469 CTAAAATTCG
* * * *
4509479 CACCAT CACCAT CTCTAT CACCAT CACCAT CATCAT CATCAT C
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT C
4509522 TGGACTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.30, C:0.44, G:0.00, T:0.26
Consensus pattern (6 bp):
CACCAT
Found at i:4513195 original size:20 final size:20
Alignment explanation
Indices: 4513170--4513210 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4513160 AAAAGAATTG
* *
4513170 ACAATAATATAAATATCAAA
1 ACAATAAAAAAAATATCAAA
*
4513190 ACAATAAAAAAAATATTAAA
1 ACAATAAAAAAAATATCAAA
4513210 A
1 A
4513211 TTTAGATACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (20 bp):
ACAATAAAAAAAATATCAAA
Found at i:4513555 original size:21 final size:20
Alignment explanation
Indices: 4513506--4513568 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
4513496 CCCCCTAACG
* *
4513506 CCCCACCACACCCAATCCCT
1 CCCCACCCCATCCAATCCCT
4513526 CCCCACCCCTATCCAATCCCT
1 CCCCACCCC-ATCCAATCCCT
* *
4513547 CCCGC-CCCCATCTAATCTCT
1 CCC-CACCCCATCCAATCCCT
4513567 CC
1 CC
4513569 TCACGTGCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 19 0.51
21 17 0.46
22 1 0.03
ACGTcount: A:0.19, C:0.62, G:0.02, T:0.17
Consensus pattern (20 bp):
CCCCACCCCATCCAATCCCT
Found at i:4517628 original size:23 final size:23
Alignment explanation
Indices: 4517602--4517645 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
4517592 TAGGACAATT
4517602 TATTTGCAAAAGAATGGGCAAAC
1 TATTTGCAAAAGAATGGGCAAAC
*
4517625 TATTTGCAAAATAATGGGCAA
1 TATTTGCAAAAGAATGGGCAA
4517646 TCAAGTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.25
Consensus pattern (23 bp):
TATTTGCAAAAGAATGGGCAAAC
Found at i:4518212 original size:16 final size:16
Alignment explanation
Indices: 4518187--4518220 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4518177 AAAAGTTTGG
4518187 AAAAAAAATTAAA-AA
1 AAAAAAAATTAAAGAA
4518202 AAAAAACAATTAAAGAA
1 AAAAAA-AATTAAAGAA
4518219 AA
1 AA
4518221 CAATTAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAAAAATTAAAGAA
Found at i:4520093 original size:39 final size:39
Alignment explanation
Indices: 4520050--4520129 Score: 115
Period size: 39 Copynumber: 2.1 Consensus size: 39
4520040 TTTACTGTAA
* * ** *
4520050 TGATTTTAGTGAGTTATTAGCTTGTTGGACTTGTTGTGG
1 TGATTCTAGTGAGTCATTAGCTAATTGGACTTGATGTGG
4520089 TGATTCTAGTGAGTCATTAGCTAATTGGACTTGATGTGG
1 TGATTCTAGTGAGTCATTAGCTAATTGGACTTGATGTGG
4520128 TG
1 TG
4520130 GTTCCAATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.19, C:0.07, G:0.30, T:0.44
Consensus pattern (39 bp):
TGATTCTAGTGAGTCATTAGCTAATTGGACTTGATGTGG
Found at i:4525243 original size:42 final size:42
Alignment explanation
Indices: 4525182--4525262 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
4525172 TTTTTTAAAG
* *
4525182 GAATAAAAATTCTTCATGGCTTGCCTTATTTAAAGATAATAA
1 GAATAAAAAATCTTAATGGCTTGCCTTATTTAAAGATAATAA
*
4525224 GAATAAAAAATCTTAATGGCTTGTCTTATTTAAAGATAA
1 GAATAAAAAATCTTAATGGCTTGCCTTATTTAAAGATAA
4525263 ATGTAGAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (42 bp):
GAATAAAAAATCTTAATGGCTTGCCTTATTTAAAGATAATAA
Found at i:4528417 original size:28 final size:23
Alignment explanation
Indices: 4528377--4528451 Score: 141
Period size: 23 Copynumber: 3.2 Consensus size: 23
4528367 AAAAAAATAC
4528377 AAAATTAAATATTTTATTTAAAT
1 AAAATTAAATATTTTATTTAAAT
4528400 AAAATTAAATATTTTATTTAAAT
1 AAAATTAAATATTTTATTTAAAT
4528423 AAAATTAAATATTTTATTTAAAT
1 AAAATTAAATATTTTATTTAAAT
4528446 AGAAAT
1 A-AAAT
4528452 GTTAAATTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 47 0.92
24 4 0.08
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (23 bp):
AAAATTAAATATTTTATTTAAAT
Found at i:4528483 original size:46 final size:46
Alignment explanation
Indices: 4528377--4528483 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 46
4528367 AAAAAAATAC
*
4528377 AAAATTAAATATTTTATTTAAATAAAATTAAATATTTTATTTAAAT
1 AAAATTAAATATTTTATTTAAATAAAATTAAATATTTTATGTAAAT
*
4528423 AAAATTAAATATTTTATTTAAATAGAAATGTTAA-A-TTT-TGTAAA-
1 AAAATTAAATATTTTATTTAAATA-AAAT-TAAATATTTTATGTAAAT
4528467 AAAATTACAATAATTTT
1 AAAATTA-AAT-ATTTT
4528484 CAAAAAATTA
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
44 7 0.13
45 8 0.15
46 32 0.58
47 5 0.09
48 3 0.05
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (46 bp):
AAAATTAAATATTTTATTTAAATAAAATTAAATATTTTATGTAAAT
Found at i:4538998 original size:2 final size:2
Alignment explanation
Indices: 4538991--4539015 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4538981 AGAGCTGGGT
4538991 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
4539016 TTTTATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:4544753 original size:21 final size:21
Alignment explanation
Indices: 4544713--4544753 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4544703 ATATCAACAG
*
4544713 TTTTAAAAAAAAATTATATCT
1 TTTTAAAAAAAAACTATATCT
4544734 TTTTACAAAAAAAACT-TATC
1 TTTTA-AAAAAAAACTATATC
4544754 CGCTATAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTTAAAAAAAAACTATATCT
Found at i:4552250 original size:17 final size:18
Alignment explanation
Indices: 4552228--4552263 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
4552218 TGACACAAAC
4552228 ATGATACGAA-TACTTAA
1 ATGATACGAATTACTTAA
4552245 ATGATACGAATTACTTAA
1 ATGATACGAATTACTTAA
4552263 A
1 A
4552264 ATGAATATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (18 bp):
ATGATACGAATTACTTAA
Found at i:4554807 original size:25 final size:25
Alignment explanation
Indices: 4554763--4554816 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
4554753 TATTAACATA
4554763 ATTATTAAAATATTAAAAA-TTATTT
1 ATTATTAAAATATTAAAAATTTA-TT
*
4554788 ATTATTAAAATA-TATTAAATTTATT
1 ATTATTAAAATATTA-AAAATTTATT
4554813 ATTA
1 ATTA
4554817 ACATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 2 0.08
25 21 0.81
26 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTATTAAAATATTAAAAATTTATT
Found at i:4554809 original size:22 final size:21
Alignment explanation
Indices: 4554784--4554826 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
4554774 ATTAAAAATT
4554784 ATTTATTATTAAAATATATTAA
1 ATTTATTATTAAAAT-TATTAA
*
4554806 ATTTATTATTAACATTATTAA
1 ATTTATTATTAAAATTATTAA
4554827 TGTTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTATTATTAAAATTATTAA
Found at i:4554893 original size:26 final size:26
Alignment explanation
Indices: 4554845--4554894 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
4554835 ATAATTATTT
* * *
4554845 TTATAATAATATTTAATATTAAAATA
1 TTATAATAATATTAAACACTAAAATA
*
4554871 TTATATTAATATTAAACACTAAAA
1 TTATAATAATATTAAACACTAAAA
4554895 ACAAAACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATAATAATATTAAACACTAAAATA
Found at i:4555215 original size:25 final size:24
Alignment explanation
Indices: 4555182--4555232 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
4555172 GAGTAGAATC
*
4555182 AAAATATTTAAAATTAAAATATTAA
1 AAAAAATTTAAAATTAAAAT-TTAA
* *
4555207 AAAAAATTTAATATTAATATTTAA
1 AAAAAATTTAAAATTAAAATTTAA
4555231 AA
1 AA
4555233 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAAAATTTAAAATTAAAATTTAA
Found at i:4561323 original size:6 final size:6
Alignment explanation
Indices: 4561300--4561343 Score: 70
Period size: 6 Copynumber: 7.0 Consensus size: 6
4561290 ATAAAATAAA
4561300 TAAATTT TAAATTT TAAATT TAAATT TAAATT TAAATT TAAATT
1 TAAA-TT TAAA-TT TAAATT TAAATT TAAATT TAAATT TAAATT
4561344 CATTTTTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.70
7 11 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:4561351 original size:18 final size:18
Alignment explanation
Indices: 4561309--4561352 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4561299 ATAAATTTTA
*
4561309 AATTTTAAATTTAAATTT
1 AATTTTAAATTTAAATTC
*
4561327 AAATTTAAATTTAAATTC
1 AATTTTAAATTTAAATTC
*
4561345 ATTTTTAA
1 AATTTTAA
4561353 TTAATAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
AATTTTAAATTTAAATTC
Found at i:4565442 original size:23 final size:23
Alignment explanation
Indices: 4565416--4565464 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
4565406 AATTCGATTC
*
4565416 AATTATTAAATGAATCGAATCCG
1 AATTATTAAATGAATCGAATACG
4565439 AATTATTAAATGAATCGAATACG
1 AATTATTAAATGAATCGAATACG
4565462 AAT
1 AAT
4565465 ATTTTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (23 bp):
AATTATTAAATGAATCGAATACG
Found at i:4566634 original size:3 final size:3
Alignment explanation
Indices: 4566626--4566663 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
4566616 GTATAAGTTG
4566626 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
4566664 GTTTTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4568292 original size:14 final size:14
Alignment explanation
Indices: 4568273--4568302 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4568263 AAGAAAGCAG
4568273 GGGAACGCTTAAGA
1 GGGAACGCTTAAGA
4568287 GGGAACGCTTAAGA
1 GGGAACGCTTAAGA
4568301 GG
1 GG
4568303 CTAAGCCCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.40, T:0.13
Consensus pattern (14 bp):
GGGAACGCTTAAGA
Found at i:4573374 original size:3 final size:3
Alignment explanation
Indices: 4573366--4573410 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
4573356 TTAAATGAAA
4573366 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4573411 TTTGTTTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4573758 original size:18 final size:19
Alignment explanation
Indices: 4573723--4573760 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
4573713 TATTCTCTAA
4573723 TAAATATATTTTATTTATT
1 TAAATATATTTTATTTATT
4573742 TAAA-ATATCTTTA-TTATT
1 TAAATATAT-TTTATTTATT
4573760 T
1 T
4573761 GTTATAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TAAATATATTTTATTTATT
Found at i:4575342 original size:22 final size:23
Alignment explanation
Indices: 4575298--4575347 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
4575288 TTTTATTCGT
*
4575298 TTTTTTTTTAATTTTGATTAAAAA
1 TTTTTTTTTAATTTT-ATAAAAAA
4575322 TTTTTTTTTAATTTT-TAAAAAA
1 TTTTTTTTTAATTTTATAAAAAA
4575344 TTTT
1 TTTT
4575348 AATTAAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 10 0.40
24 15 0.60
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTTTTTTTAATTTTATAAAAAA
Found at i:4576031 original size:31 final size:30
Alignment explanation
Indices: 4575996--4576095 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 30
4575986 AATCCTTTTT
4575996 TAAAAAATTCATATCATTTTTAAAAATTAAG
1 TAAAAAATTCATATCA-TTTTAAAAATTAAG
** * * * *
4576027 TAAAATTTTTATATCAGCTTAAAAAATTAAA
1 TAAAAAATTCATATCA-TTTTAAAAATTAAG
* *
4576058 TAAAAAACTCCCTATCATTTTAAAATATTAAG
1 TAAAAAA-TTCATATCATTTTAAAA-ATTAAG
4576090 TAAAAA
1 TAAAAA
4576096 TTTTTATATA
Statistics
Matches: 52, Mismatches: 15, Indels: 3
0.74 0.21 0.04
Matches are distributed among these distances:
31 35 0.67
32 17 0.33
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (30 bp):
TAAAAAATTCATATCATTTTAAAAATTAAG
Found at i:4576111 original size:31 final size:31
Alignment explanation
Indices: 4576014--4576114 Score: 89
Period size: 31 Copynumber: 3.3 Consensus size: 31
4576004 TCATATCATT
*
4576014 TTTAAAAATTAAGT-AAAATTTTTATATCAGC
1 TTTAAAAATTAAGTAAAAATTTTTATATCA-A
* * ** *** *
4576045 TTAAAAAATTAAATAAAAAACTCCCTATCAT
1 TTTAAAAATTAAGTAAAAATTTTTATATCAA
4576076 TTTAAAATATTAAGTAAAAATTTTTATAT-AA
1 TTTAAAA-ATTAAGTAAAAATTTTTATATCAA
4576107 TTTAAAAA
1 TTTAAAAA
4576115 CAGATTTATT
Statistics
Matches: 52, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
30 1 0.02
31 26 0.50
32 25 0.48
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (31 bp):
TTTAAAAATTAAGTAAAAATTTTTATATCAA
Found at i:4576403 original size:31 final size:32
Alignment explanation
Indices: 4576368--4576427 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
4576358 TAATAAATTG
*
4576368 AATTTTT-TAAATGATATGAAAATTTTTACTT
1 AATTTTTAAAAATGATATGAAAATTTTTACTT
4576399 AATTTTTAAAAATGATATGAAAATTTTTA
1 AATTTTTAAAAATGATATGAAAATTTTTA
4576428 AAAGGATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 7 0.26
32 20 0.74
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (32 bp):
AATTTTTAAAAATGATATGAAAATTTTTACTT
Found at i:4576523 original size:77 final size:78
Alignment explanation
Indices: 4576437--4576592 Score: 271
Period size: 77 Copynumber: 2.0 Consensus size: 78
4576427 AAAAGGATTT
* *
4576437 TGAATTTTTAACTAATAAATTATATTATAATAAAATAAA-ATAATATTATTTTAAATTTAATATT
1 TGAATTTTTAACAAATAAATTATATTATAATAAAATAAATAT-ATATTATTTTAAAATTAATATT
4576501 TTATAAGATATATC
65 TTATAAGATATATC
4576515 TGAA-TTTTAACAAATAAATTATATTATAATAAAATAAATATATATTATTTTAAAATTAATATTT
1 TGAATTTTTAACAAATAAATTATATTATAATAAAATAAATATATATTATTTTAAAATTAATATTT
4576579 TATAAGATATATC
66 TATAAGATATATC
4576592 T
1 T
4576593 AAAATAAAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
77 69 0.92
78 6 0.08
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (78 bp):
TGAATTTTTAACAAATAAATTATATTATAATAAAATAAATATATATTATTTTAAAATTAATATTT
TATAAGATATATC
Found at i:4576560 original size:21 final size:21
Alignment explanation
Indices: 4576526--4576583 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
4576516 GAATTTTAAC
4576526 AAATAAAT-TATATTATAATA
1 AAATAAATATATATTATAATA
**
4576546 AAATAAATATATATTATTTTA
1 AAATAAATATATATTATAATA
*
4576567 AAATTAATAT-T-TTATAA
1 AAATAAATATATATTATAA
4576584 GATATATCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
19 4 0.12
20 9 0.28
21 19 0.59
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATAAATATATATTATAATA
Found at i:4576881 original size:19 final size:21
Alignment explanation
Indices: 4576857--4576901 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
4576847 TAATTTTAAA
*
4576857 TTTATA-TT-AAAAGTAATAT
1 TTTATATTTAAAAAATAATAT
4576876 TTTATATTTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
4576897 TTTAT
1 TTTAT
4576902 TAATTTCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 2 0.09
21 15 0.65
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:4579377 original size:10 final size:10
Alignment explanation
Indices: 4579364--4579388 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4579354 AAGCTTAAAA
4579364 AAATAGAATT
1 AAATAGAATT
4579374 AAATAGAATT
1 AAATAGAATT
4579384 AAATA
1 AAATA
4579389 TTTTTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (10 bp):
AAATAGAATT
Found at i:4579444 original size:33 final size:31
Alignment explanation
Indices: 4579372--4579444 Score: 76
Period size: 33 Copynumber: 2.2 Consensus size: 31
4579362 AAAAATAGAA
*
4579372 TTAAATAGAATTAAATATTTTTATTAATTTT
1 TTAAATAGAAATAAATATTTTTATTAATTTT
*
4579403 TATAAAATA-AAATAATTATTTTATATTAAATTTAT
1 T-T-AAATAGAAATAAATATTTT-TATT-AATTT-T
4579438 TTAAATA
1 TTAAATA
4579445 TATTAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
31 1 0.03
32 12 0.34
33 14 0.40
34 6 0.17
35 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (31 bp):
TTAAATAGAAATAAATATTTTTATTAATTTT
Found at i:4579460 original size:12 final size:12
Alignment explanation
Indices: 4579440--4579478 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
4579430 AAATTTATTT
4579440 AAATATATTAAA
1 AAATATATTAAA
*
4579452 AATTATATTAAA
1 AAATATATTAAA
*
4579464 ATAACATATTAAA
1 A-AATATATTAAA
4579477 AA
1 AA
4579479 CAAAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
AAATATATTAAA
Found at i:4579462 original size:21 final size:19
Alignment explanation
Indices: 4579424--4579463 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
4579414 ATAATTATTT
*
4579424 TATATTAAATTTATTTAAA
1 TATATTAAAATTATTTAAA
4579443 TATATTAAAAATTATATTAAA
1 TATATT-AAAATTAT-TTAAA
4579464 ATAACATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 7 0.39
21 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATATTAAAATTATTTAAA
Found at i:4582641 original size:15 final size:15
Alignment explanation
Indices: 4582621--4582650 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4582611 GGACTCCAGC
4582621 AACTTACCTTCGGAT
1 AACTTACCTTCGGAT
*
4582636 AACTTACCTTTGGAT
1 AACTTACCTTCGGAT
4582651 CGAGGGAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (15 bp):
AACTTACCTTCGGAT
Found at i:4583854 original size:27 final size:27
Alignment explanation
Indices: 4583805--4583857 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
4583795 TTAAAATATG
* * * *
4583805 TAAATTATTTAATATTTATAAAATTAA
1 TAAATTATTAAAAAATTAAAAAATTAA
4583832 TAAATTATTAAAAAATTAAAAAATTA
1 TAAATTATTAAAAAATTAAAAAATTA
4583858 TTTTTATGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TAAATTATTAAAAAATTAAAAAATTAA
Found at i:4584033 original size:12 final size:12
Alignment explanation
Indices: 4584016--4584082 Score: 50
Period size: 12 Copynumber: 5.6 Consensus size: 12
4584006 TTAAATTTTA
4584016 TTTATTTATTAG
1 TTTATTTATTAG
*
4584028 TTTA-TTATATAA
1 TTTATTTAT-TAG
**
4584040 TAAATTTTATTA-
1 TTTA-TTTATTAG
*
4584052 TTTA-TTAGTTTG
1 TTTATTTA-TTAG
4584064 TTTATTTATTAG
1 TTTATTTATTAG
4584076 TTTATTT
1 TTTATTT
4584083 TAGTGAAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
10 3 0.07
11 6 0.14
12 24 0.57
13 5 0.12
14 4 0.10
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (12 bp):
TTTATTTATTAG
Found at i:4585938 original size:43 final size:43
Alignment explanation
Indices: 4585877--4586024 Score: 260
Period size: 43 Copynumber: 3.4 Consensus size: 43
4585867 AGTCTTAAAA
*
4585877 AAGGTTGGCTTATGACATCTTATATCCATTCATGGCCTTATAC
1 AAGGTTGGCTTATGACATCTTATATTCATTCATGGCCTTATAC
*
4585920 AAGGTTGGCTTATGACATCTTATATTCATTCATGACCTTATAC
1 AAGGTTGGCTTATGACATCTTATATTCATTCATGGCCTTATAC
*
4585963 AAGGTTGGCTTATGACATCCTATATTCATTCATGGCCTTATAC
1 AAGGTTGGCTTATGACATCTTATATTCATTCATGGCCTTATAC
*
4586006 AAGGTTGACTTATGACATC
1 AAGGTTGGCTTATGACATC
4586025 CTCTCTTACT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (43 bp):
AAGGTTGGCTTATGACATCTTATATTCATTCATGGCCTTATAC
Found at i:4590350 original size:19 final size:19
Alignment explanation
Indices: 4590328--4590376 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
4590318 AAGGTAAGAA
*
4590328 TTCTAAGTCAAAGTGGGAT
1 TTCTAAGTCAAAATGGGAT
*
4590347 TTCTTAA-TCAAAATGGTAT
1 TTC-TAAGTCAAAATGGGAT
4590366 TTCTAAGTCAA
1 TTCTAAGTCAA
4590377 TGAAGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 3 0.12
19 20 0.77
20 3 0.12
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (19 bp):
TTCTAAGTCAAAATGGGAT
Found at i:4595188 original size:34 final size:34
Alignment explanation
Indices: 4595150--4595224 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
4595140 TTGAGAGTAA
4595150 TTATATTTGACATCATTCTTATTGATGTATACTC
1 TTATATTTGACATCATTCTTATTGATGTATACTC
4595184 TTATATTTGACATCATTCTTATTGATGTATACTC
1 TTATATTTGACATCATTCTTATTGATGTATACTC
*
4595218 TCATATT
1 TTATATT
4595225 GAGTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.51
Consensus pattern (34 bp):
TTATATTTGACATCATTCTTATTGATGTATACTC
Found at i:4595203 original size:18 final size:18
Alignment explanation
Indices: 4595150--4595205 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
4595140 TTGAGAGTAA
4595150 TTATATTTGACATCATTC
1 TTATATTTGACATCATTC
* * *
4595168 TTAT-TGATG-TAT-ACTC
1 TTATAT-TTGACATCATTC
4595184 TTATATTTGACATCATTC
1 TTATATTTGACATCATTC
4595202 TTAT
1 TTAT
4595206 TGATGTATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 9 0.32
17 6 0.21
18 13 0.46
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (18 bp):
TTATATTTGACATCATTC
Found at i:4598692 original size:18 final size:19
Alignment explanation
Indices: 4598648--4598698 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
4598638 TTAATAATTT
*
4598648 AAAATATAATATAATGATAT
1 AAAATA-AATATAATGATAA
* *
4598668 AATATAAATATGA-GATAA
1 AAAATAAATATAATGATAA
*
4598686 AAAATAAAAATAA
1 AAAATAAATATAA
4598699 CACAATTTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 14 0.56
19 6 0.24
20 5 0.20
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAATAAATATAATGATAA
Found at i:4598817 original size:20 final size:22
Alignment explanation
Indices: 4598794--4598839 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
4598784 ATATAATTTT
4598794 TATATAAA-ATATAATA-CTA-A
1 TATATAAATA-ATAATATCTAGA
4598814 TATATAAATAATAATATCTAGA
1 TATATAAATAATAATATCTAGA
4598836 TATA
1 TATA
4598840 AATTTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 14 0.61
21 4 0.17
22 5 0.22
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (22 bp):
TATATAAATAATAATATCTAGA
Found at i:4604426 original size:15 final size:16
Alignment explanation
Indices: 4604408--4604442 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
4604398 AAATTTTATC
4604408 GGTAAAC-ATTTTGTT
1 GGTAAACTATTTTGTT
4604423 GGT-AACTATTTTGTT
1 GGTAAACTATTTTGTT
4604438 GGTAA
1 GGTAA
4604443 TTGTGTCGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.17
15 14 0.78
16 1 0.06
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.46
Consensus pattern (16 bp):
GGTAAACTATTTTGTT
Found at i:4605676 original size:159 final size:159
Alignment explanation
Indices: 4605488--4606397 Score: 756
Period size: 159 Copynumber: 5.8 Consensus size: 159
4605478 TGTACAAAAC
* * *
4605488 ACTATCTAGTTCAATACTA-AATTTTCTACAAATTTTCAT-CTTTCAATTACTATAAAGATACTT
1 ACTATCTAGTTCAATA-AAGAATTTCCTACAAATTTT-ATGCTTTCAATTACTATAAAGATAGTT
* * * * * *
4605551 AATCAACAATCACAATACATAACCAAAATCATAAAACAAAATATGCAATAATTTTCATTTTTCAC
64 CATCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCAC
* **
4605616 AAATGTGATCTCATCACAATACATGCTATCT
129 AAATGTGATCTCATCGCAATACACACTATCT
* * * * *
4605647 ACTATCTAATTTAATAAAGAATTTCCTACAAATTTTATGCTTTGAATTGCTATAAAAATAGTTCA
1 ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTATGCTTTCAATTACTATAAAGATAGTTCA
* * * ** * * * *
4605712 TAAACAATCATAATACACAACCAGAATCACAAAGCAAAATACACAATAATTTTTACCTTTAACAA
66 TCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCACAA
* * * *
4605777 A-GTCAT-TGCATCTCAATACACACAAAAC-
131 ATGTGATCT-CATCGCAATACACAC-TATCT
* ** * * * * * * *
4605805 AATATCTAGTTCAATATTGATTTTTCTACAATTTTTAGGCTTTCAATCATTATAATGATAG-T--
1 ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTATGCTTTCAATTACTATAAAGATAGTTCA
* * *
4605867 T---C-AT--C---A-ACAACCAAAATCACAAAGCATAATAGGCAATAGTTTTCGCTTTTCACAA
66 TCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCACAA
* * * *
4605922 ATGTGATCTCATTGTAATACATA-TAATAT
131 ATGTGATCTCATCGCAATACACACT-ATCT
* * * * *
4605951 ACTATCTAGTTTAATAAAGAATTTCTTACAAATTTTATACTTTGAATTATTATAAA-AGTAGTTC
1 ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTATGCTTTCAATTACTATAAAGA-TAGTTC
* * * * *
4606015 ATCAATAATCACAATATATAACCATAATCACAAAGCAAAATATGCATTAGTTTTCAACTTTT-AC
65 ATCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTC-ACTTTTCAC
** * * *
4606079 AAATGTGATCTCATCTTAATATACACAAAAC-
129 AAATGTGATCTCATCGCAATACACAC-TATCT
* ** * * * *
4606110 ATTATCTAGTTCAATACTGAATTTCCTATAATTTTTAAGCTTTCAATTACCATAAAGATAGTTCA
1 ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTATGCTTTCAATTACTATAAAGATAGTTCA
* * * * *
4606175 TCAATAATCACAATACACAACCAAAATCACAAAGTAAAATATGCTATAGTTTTCAATTTTCATAA
66 TCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCACAA
* * * *
4606240 ATGTGATCTTATCGCAATGCAC-GTAATAT
131 ATGTGATCTCATCGCAATACACACT-ATCT
* * * *
4606269 ACTATCTAGTTCAATAAAGAATTTTCTACAAA-TTTATTGCTTTGAATTATTATAAAAATAGTTC
1 ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTA-TGCTTTCAATTACTATAAAGATAGTTC
* * * * * *
4606333 ACCAACAATCACAATACACAACCAAATTCATAAAGTAAAATAT--AATAGTTTTCACCTCTCACA
65 ATCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCACA
4606396 AA
130 AA
4606398 ATCTTTGCAT
Statistics
Matches: 585, Mismatches: 136, Indels: 62
0.75 0.17 0.08
Matches are distributed among these distances:
145 43 0.07
146 61 0.10
147 2 0.00
149 1 0.00
151 2 0.00
152 1 0.00
153 2 0.00
155 2 0.00
157 19 0.03
158 76 0.13
159 369 0.63
160 7 0.01
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.34
Consensus pattern (159 bp):
ACTATCTAGTTCAATAAAGAATTTCCTACAAATTTTATGCTTTCAATTACTATAAAGATAGTTCA
TCAACAATCACAATACACAACCAAAATCACAAAGCAAAATATGCAATAGTTTTCACTTTTCACAA
ATGTGATCTCATCGCAATACACACTATCT
Found at i:4608124 original size:43 final size:43
Alignment explanation
Indices: 4608058--4608140 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
4608048 TTCTGAGATA
*
4608058 GTAACATTTCATAGAGTAAAACTTCAACTTATTGGTACACATG
1 GTAACATTGCATAGAGTAAAACTTCAACTTATTGGTACACATG
* * * *
4608101 GTAACATTGCATGGAGTAGAACTTTAACTTCTTGGTACAC
1 GTAACATTGCATAGAGTAAAACTTCAACTTATTGGTACAC
4608141 GTATTCATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (43 bp):
GTAACATTGCATAGAGTAAAACTTCAACTTATTGGTACACATG
Found at i:4612069 original size:13 final size:13
Alignment explanation
Indices: 4612036--4612077 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
4612026 TTGTTTAAAG
* *
4612036 TTTGAGAATATAC
1 TTTGAGATTTTAC
4612049 TTTGAGATTTTAC
1 TTTGAGATTTTAC
*
4612062 TTTGAGATTTTGC
1 TTTGAGATTTTAC
4612075 TTT
1 TTT
4612078 TATTGCAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.52
Consensus pattern (13 bp):
TTTGAGATTTTAC
Found at i:4612127 original size:33 final size:32
Alignment explanation
Indices: 4612084--4612150 Score: 98
Period size: 33 Copynumber: 2.1 Consensus size: 32
4612074 CTTTTATTGC
* *
4612084 AATAACAAAAAAAAAATGCCTATTTCTAGTTCA
1 AATAAAAAAAAAAAAATGCCCATTT-TAGTTCA
*
4612117 AATAAAAAAAAAAAATTGCCCATTTTAGTTCA
1 AATAAAAAAAAAAAAATGCCCATTTTAGTTCA
4612149 AA
1 AA
4612151 GAAAGTAAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 9 0.29
33 22 0.71
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (32 bp):
AATAAAAAAAAAAAAATGCCCATTTTAGTTCA
Found at i:4612131 original size:32 final size:33
Alignment explanation
Indices: 4612084--4612150 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 33
4612074 CTTTTATTGC
*
4612084 AATAACAAAAAAAAAA-TGCCTATTTCTAGTTCA
1 AATAACAAAAAAAAAATTGCCCATTT-TAGTTCA
4612117 AATAA-AAAAAAAAAATTGCCCATTTTAGTTCA
1 AATAACAAAAAAAAAATTGCCCATTTTAGTTCA
4612149 AA
1 AA
4612151 GAAAGTAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 19 0.59
33 13 0.41
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (33 bp):
AATAACAAAAAAAAAATTGCCCATTTTAGTTCA
Found at i:4625304 original size:3 final size:3
Alignment explanation
Indices: 4625296--4625353 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
4625286 CTAATGCTAG
4625296 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4625344 TTA TTA TTA T
1 TTA TTA TTA T
4625354 GCCCAACTAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4638153 original size:24 final size:24
Alignment explanation
Indices: 4638126--4638177 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
4638116 TTATTAAAAC
*
4638126 TTTTTAAATTATAATTATAATAAT
1 TTTTTAAATTATAATTATAATAAA
*
4638150 TTTTTTAATTATAATTATAATAAA
1 TTTTTAAATTATAATTATAATAAA
4638174 TTTT
1 TTTT
4638178 ATTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTTAAATTATAATTATAATAAA
Found at i:4638179 original size:18 final size:18
Alignment explanation
Indices: 4638158--4638197 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
4638148 ATTTTTTTAA
4638158 TTATAATTATAATAAATT
1 TTATAATTATAATAAATT
* * *
4638176 TTATTATTATTATTAATT
1 TTATAATTATAATAAATT
4638194 TTAT
1 TTAT
4638198 CATAATCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTATAATTATAATAAATT
Found at i:4638184 original size:24 final size:24
Alignment explanation
Indices: 4638132--4638190 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
4638122 AAACTTTTTA
*
4638132 AATTATAATTATAATAATTTTTTT
1 AATTATAATTATAATAATTTTATT
4638156 AATTATAATTATAATAAATTTTATT
1 AATTATAATTATAAT-AATTTTATT
*
4638181 -ATTATTATTA
1 AATTATAATTA
4638191 ATTTTATCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 24 0.75
25 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
AATTATAATTATAATAATTTTATT
Found at i:4638715 original size:16 final size:15
Alignment explanation
Indices: 4638694--4638724 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4638684 AAAACTATCA
4638694 AATAAAATATTTAAAT
1 AATAAAATA-TTAAAT
4638710 AATAAAATATTAAAT
1 AATAAAATATTAAAT
4638725 TAAAAGCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAAATATTAAAT
Found at i:4639915 original size:14 final size:15
Alignment explanation
Indices: 4639898--4639928 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4639888 TGATAAATTT
4639898 AAAAAT-AAAAATAA
1 AAAAATAAAAAATAA
4639912 AAAAATAAAAAATAA
1 AAAAATAAAAAATAA
4639927 AA
1 AA
4639929 TCATCATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAATAAAAAATAA
Found at i:4641064 original size:23 final size:20
Alignment explanation
Indices: 4641022--4641074 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
4641012 CATAAATATT
*
4641022 AATAAATTTAAAATAACAAA
1 AATAAATTTAAAAAAACAAA
4641042 AATAATATTTAAAAAAATTCAAA
1 AATAA-ATTTAAAAAAA--CAAA
*
4641065 AAAAAATTTA
1 AATAAATTTA
4641075 CACCTGAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 5 0.18
21 10 0.36
22 5 0.18
23 8 0.29
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAATTTAAAAAAACAAA
Found at i:4641164 original size:21 final size:22
Alignment explanation
Indices: 4641139--4641186 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
4641129 GGTCTGATTA
*
4641139 GGTTCAGTTTG-AGGTTAGTCT
1 GGTTCAGTTTGAAGGTCAGTCT
*
4641160 GGTTCAGTTTGAAGGTCGGTCT
1 GGTTCAGTTTGAAGGTCAGTCT
4641182 GGTTC
1 GGTTC
4641187 GATTTGGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.12, C:0.12, G:0.35, T:0.40
Consensus pattern (22 bp):
GGTTCAGTTTGAAGGTCAGTCT
Found at i:4642298 original size:193 final size:194
Alignment explanation
Indices: 4641913--4642301 Score: 572
Period size: 193 Copynumber: 2.0 Consensus size: 194
4641903 TTATTTATTT
*
4641913 TAAAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATG
1 TAAAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACCTTTTTATTGAAATAATTATTAAAATG
* * *
4641978 TTCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTAC
66 TTCCAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCGCTAC
* * * * *
4642043 TCGGAATACTTTTAGAATCTCATCTTCGGAGGCTCGAATTTATTTTTCGTAAGAAAATGTCATG
131 TCGGAATACTCTTAGAATCTCATCCTCGGAGGCTCAAATTTACTTTTCGTAAAAAAATGTCATG
*
4642107 TAAAAAAA-TTTATT-CTCGAGAAAAAATAAATTTAAACCTTTTTATTGAAATAATTATTAAAAT
1 TAAAAAAATTTTATTCCT-GAGAAAAAATAAATTAAAACCTTTTTATTGAAATAATTATTAAAAT
* * * * *
4642170 GTTCCAATACGTTGGTAACATTAAAAGAATTTTTTCTTACCTAAAGATTTCTT-AGGCATCGCTT
65 GTTCCAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCGCTA
4642234 CTCGGAATAC-CTTAGAATCTCATCCTCGGAGG-TCTAAATTTACTTTTCGTAAAAAATTATGTC
130 CTCGGAATACTCTTAGAATCTCATCCTCGGAGGCTC-AAATTTACTTTTCGTAAAAAA--ATGTC
4642297 ATG
192 ATG
4642300 TA
1 TA
4642302 TGCAATGCAA
Statistics
Matches: 176, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
190 2 0.01
191 38 0.22
192 20 0.11
193 108 0.61
194 8 0.05
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (194 bp):
TAAAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACCTTTTTATTGAAATAATTATTAAAATG
TTCCAATACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCGCTAC
TCGGAATACTCTTAGAATCTCATCCTCGGAGGCTCAAATTTACTTTTCGTAAAAAAATGTCATG
Found at i:4642934 original size:15 final size:15
Alignment explanation
Indices: 4642899--4642941 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
4642889 TTTAATATGC
4642899 ATAAATAT-TAATAAA
1 ATAAATATATAA-AAA
4642914 AT-AATATATAAAAA
1 ATAAATATATAAAAA
*
4642928 ATAAATAAATAAAA
1 ATAAATATATAAAA
4642942 TTTTTTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAATATATAAAAA
Found at i:4643047 original size:30 final size:30
Alignment explanation
Indices: 4643012--4643068 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
4643002 TCGGTCCGGT
4643012 GGTTCGGCTCGGTCTAGGCGGTTCAGTACC
1 GGTTCGGCTCGGTCTAGGCGGTTCAGTACC
* * *
4643042 GGTTCGGTTTGGTCTGGGCGGTTCAGT
1 GGTTCGGCTCGGTCTAGGCGGTTCAGT
4643069 TTCGGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.07, C:0.21, G:0.40, T:0.32
Consensus pattern (30 bp):
GGTTCGGCTCGGTCTAGGCGGTTCAGTACC
Found at i:4643126 original size:12 final size:12
Alignment explanation
Indices: 4643109--4643133 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4643099 TGAAGAAAAC
4643109 GGGTCGCGGGTT
1 GGGTCGCGGGTT
4643121 GGGTCGCGGGTT
1 GGGTCGCGGGTT
4643133 G
1 G
4643134 ACGCGCGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.60, T:0.24
Consensus pattern (12 bp):
GGGTCGCGGGTT
Found at i:4644690 original size:46 final size:46
Alignment explanation
Indices: 4644551--4645408 Score: 1143
Period size: 46 Copynumber: 18.4 Consensus size: 46
4644541 TTACAGCCCT
* *
4644551 AGGCTCAACGACTTTAAAATCTCATCTTGGAAAA-GCTCCTTTCAGCAG
1 AGGCTCAACAACTTTAAAAT-TC-TCTT-GAAAAGGCTCCTCTCAGCAG
*
4644599 AGGCTCAACAACTTTAAAATTTTATCTTGGAAAA-GCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAA--TTCTCTT-GAAAAGGCTCCTCTCAGCAG
* *
4644647 AGGCTTAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
** * *
4644693 AGGCTCAATGACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAA
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4644739 AGGCTCAACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* *
4644786 AGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
*
4644832 AGGCTCAACAACTTTAAAATCTCATCTTGGAAAA-GCTCCTCTTAGCAG
1 AGGCTCAACAACTTTAAAAT-TC-TCTT-GAAAAGGCTCCTCTCAGCAG
* *
4644880 AGGCTCAACAACTTTAAAATTTTATCTTGGAAAA-GCTCCTCTCAGCAA
1 AGGCTCAACAACTTTAAAA--TTCTCTT-GAAAAGGCTCCTCTCAGCAG
* **
4644928 AGGCTTAATGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* *
4644974 AAGCTCGACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* * *
4645021 AGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTCTTCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* * * *
4645067 AGACTCAACAACTTTAAAAATTTTCTTGAAAAAGCTCCTCTCAACAG
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
*
4645114 AGGCTCCACAACTTTAAAA-TCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4645159 AGGCTCAACAACTTTAAAATCTCATCTTGGAAAA-GCTCCTCTCAGCAG
1 AGGCTCAACAACTTTAAAAT-TC-TCTT-GAAAAGGCTCCTCTCAGCAG
* * * * * *
4645207 AGGCTTAACGACTTTAAAATTCTTTTAAAAAGACTCATCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4645253 AGGCTCAACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* * * *
4645300 AGGCTCAACGACTTTAAAATTCTTTTAAAAAGGCTCATCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
* * *
4645346 AGGCTCAACAACTTTAAAATTCTCTTAAAAAAGCTCATCTCAGCAG
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4645392 AGGCTCAACAACTTTAA
1 AGGCTCAACAACTTTAA
4645409 TTTCAAATTT
Statistics
Matches: 726, Mismatches: 66, Indels: 38
0.87 0.08 0.05
Matches are distributed among these distances:
45 55 0.08
46 315 0.43
47 174 0.24
48 168 0.23
49 12 0.02
50 2 0.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (46 bp):
AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
Found at i:4644790 original size:93 final size:92
Alignment explanation
Indices: 4644551--4645408 Score: 1200
Period size: 93 Copynumber: 9.2 Consensus size: 92
4644541 TTACAGCCCT
*
4644551 AGGCTCAACGACTTTAAAATCTCATCTTGGAAAA-GCTCCTTTCAGCAGAGGCTCAACAACTTTA
1 AGGCTCAACGACTTTAAAAT-TC-TCTT-GAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTA
* *
4644615 AAATTTTATCTTGGAAAAGCTCCTCTCAGCAG
63 AAA--TTCTCTTGAAAAAGCTCCTCTCAGCAG
* **
4644647 AGGCTTAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAATGACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
*
4644712 TTCTCTTGAAAAAGCTCCTCTCAGCAA
66 TTCTCTTGAAAAAGCTCCTCTCAGCAG
* *
4644739 AGGCTCAACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAA
1 AGGCTCAACGACTTT-AAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAA
4644804 ATTCTCTTGAAAAAGCTCCTCTCAGCAG
65 ATTCTCTTGAAAAAGCTCCTCTCAGCAG
* *
4644832 AGGCTCAACAACTTTAAAATCTCATCTTGGAAAA-GCTCCTCTTAGCAGAGGCTCAACAACTTTA
1 AGGCTCAACGACTTTAAAAT-TC-TCTT-GAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTA
* * *
4644896 AAATTTTATCTTGGAAAAGCTCCTCTCAGCAA
63 AAA--TTCTCTTGAAAAAGCTCCTCTCAGCAG
* * * *
4644928 AGGCTTAATGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAAGCTCGACAACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAA
*
4644993 ATTCTCTTGAAAAGGCTCCTCTCAGCAG
65 ATTCTCTTGAAAAAGCTCCTCTCAGCAG
* * *
4645021 AGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTCTTCTCAGCAGAGACTCAACAACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAA
* *
4645086 ATTTTCTTGAAAAAGCTCCTCTCAACAG
65 ATTCTCTTGAAAAAGCTCCTCTCAGCAG
* *
4645114 AGGCTCCACAACTTTAAAA-TCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
*
4645178 TCTCATCTTGGAAAAGCTCCTCTCAGCAG
66 T-TC-TCTTGAAAAAGCTCCTCTCAGCAG
* * * * *
4645207 AGGCTTAACGACTTTAAAATTCTTTTAAAAAGACTCATCTCAGCAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAA
*
4645272 ATTCTCTTGAAAAGGCTCCTCTCAGCAG
65 ATTCTCTTGAAAAAGCTCCTCTCAGCAG
* * *
4645300 AGGCTCAACGACTTTAAAATTCTTTTAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
* *
4645365 TTCTCTTAAAAAAGCTCATCTCAGCAG
66 TTCTCTTGAAAAAGCTCCTCTCAGCAG
*
4645392 AGGCTCAACAACTTTAA
1 AGGCTCAACGACTTTAA
4645409 TTTCAAATTT
Statistics
Matches: 690, Mismatches: 59, Indels: 30
0.89 0.08 0.04
Matches are distributed among these distances:
91 5 0.01
92 125 0.18
93 344 0.50
94 138 0.20
95 18 0.03
96 60 0.09
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (92 bp):
AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
TTCTCTTGAAAAAGCTCCTCTCAGCAG
Found at i:4644804 original size:139 final size:138
Alignment explanation
Indices: 4644551--4645408 Score: 1184
Period size: 139 Copynumber: 6.1 Consensus size: 138
4644541 TTACAGCCCT
* * *
4644551 AGGCTCAACGACTTTAAAATCTCATCTTGGAAAAGCTCCTTTCAGCAGAGGCTCAACAACTTTAA
1 AGGCTCAACAACTTTAAAAT-TC-TCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAA
* * *
4644616 AATTTTATCTTGGAAAAGCTCCTCTCAGCAGAGGCTTAACGACTTTAAAATTCTCTTGAAAAGGC
64 AA--TTCTCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGC
4644681 TCCTCTCAGCAG
127 TCCTCTCAGCAG
** *
4644693 AGGCTCAATGACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAA
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAA
4644758 ATTCTCTT-GAAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTC
65 ATTCTCTTGGAAAA-GCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTC
4644822 CTCTCAGCAG
129 CTCTCAGCAG
* *
4644832 AGGCTCAACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTTAGCAGAGGCTCAACAACTTTAA
1 AGGCTCAACAACTTTAAAAT-TC-TCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAA
* * * * *
4644897 AATTTTATCTTGGAAAAGCTCCTCTCAGCAAAGGCTTAATGACTTTAAAATTCTCTTGAAAAGGC
64 AA--TTCTCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGC
4644962 TCCTCTCAGCAG
127 TCCTCTCAGCAG
* * * *
4644974 AAGCTCGACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAA
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAA
* * * * *
4645039 ATTCTCTTGAAAAAGCTCTTCTCAGCAGAGACTCAACAACTTTAAAAATTTTCTTGAAAAAGCTC
65 ATTCTCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACGACTTT-AAAATTCTCTTGAAAAAGCTC
*
4645104 CTCTCAACAG
129 CTCTCAGCAG
* *
4645114 AGGCTCCACAACTTTAAAA-TCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
1 AGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
* *
4645178 TCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTTAACGACTTTAAAATTCT-TTTAAAAAGACT
66 T-TC-TCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAG-CT
*
4645242 CATCTCAGCAG
128 CCTCTCAGCAG
* *
4645253 AGGCTCAACAACTTTAAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAA
1 AGGCTCAACAACTTT-AAAATTCTCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAA
** * * *
4645318 ATTCT-TTTAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTAAAAAAGCTC
65 ATTCTCTTGGAAAA-GCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTC
*
4645382 ATCTCAGCAG
129 CTCTCAGCAG
4645392 AGGCTCAACAACTTTAA
1 AGGCTCAACAACTTTAA
4645409 TTTCAAATTT
Statistics
Matches: 646, Mismatches: 54, Indels: 36
0.88 0.07 0.05
Matches are distributed among these distances:
138 66 0.10
139 217 0.34
140 131 0.20
141 126 0.20
142 96 0.15
143 10 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (138 bp):
AGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
TTCTCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAAGCTCCT
CTCAGCAG
Found at i:4652013 original size:193 final size:194
Alignment explanation
Indices: 4651630--4652015 Score: 568
Period size: 193 Copynumber: 2.0 Consensus size: 194
4651620 ATTTATTTAA
4651630 AAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATGTT
1 AAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATGTT
* * *
4651695 CCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTC
66 CCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAAATTTCTTAAAGCATCGCTACTC
* * * *
4651760 GGAATACTTTCAGAATCTCACCTTCGGAGGCTCGAATTTATTTTTCGTAAGAAAATGTCATGTT
131 GGAATACCTTCAGAATCTCACCTTCGGAGGCTCAAATTTACTTTTCGTAAAAAAATGTCATGTT
* *
4651824 AAAAAA-TTTATT-CTCGAGAAAAAATAAATTTAAACCTTTTTATTGAAATAATTCTTAAAATGT
1 AAAAAATTTTATTCCT-GAGAAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATGT
* * *
4651887 TCCAGTACGTTGGTAACATTAAAAGAACTTTTTCTCACCTAAAAATTTCTT-AGGCATCGCTTCT
65 TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAAATTTCTTAAAGCATCGCTACT
*
4651951 CGGAATACCTT-AGAATCTCATCC-TCGGAGG-TCTAAATTTACTTTTCTTAAAAAATTATGTCA
130 CGGAATACCTTCAGAATCTCA-CCTTCGGAGGCTC-AAATTTACTTTTCGTAAAAAA--ATGTCA
4652013 TGT
191 TGT
4652016 ATGCAATGCA
Statistics
Matches: 174, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
190 2 0.01
191 33 0.19
192 24 0.14
193 109 0.63
194 6 0.03
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (194 bp):
AAAAAATTTTATTCCTGAGAAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATGTT
CCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAAATTTCTTAAAGCATCGCTACTC
GGAATACCTTCAGAATCTCACCTTCGGAGGCTCAAATTTACTTTTCGTAAAAAAATGTCATGTT
Found at i:4653345 original size:27 final size:28
Alignment explanation
Indices: 4653309--4653372 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
4653299 TTTTTGCTTC
*
4653309 TTTTTTTTTTGTGTTTCTGCAG-AT-TT
1 TTTTTTTTTTGTGTTTCAGCAGAATCTT
* *
4653335 TTTTTTCTTTTTTTTTTCAGCAGAATCTT
1 TTTTTT-TTTTGTGTTTCAGCAGAATCTT
4653364 TTTTTTTTT
1 TTTTTTTTT
4653373 ATCGTCTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.19
27 13 0.41
28 5 0.16
29 8 0.25
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.72
Consensus pattern (28 bp):
TTTTTTTTTTGTGTTTCAGCAGAATCTT
Found at i:4654230 original size:13 final size:12
Alignment explanation
Indices: 4654178--4654231 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
4654168 CCCTACCTCA
4654178 TTTTGTTTTTTT
1 TTTTGTTTTTTT
* *
4654190 CTTTTCTTGTTTT
1 -TTTTGTTTTTTT
4654203 TTTTGTTTGTATTT
1 TTTTGTTT-T-TTT
4654217 TTTTGTTCTTTTT
1 TTTTGTT-TTTTT
4654230 TT
1 TT
4654232 CATATTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 6 0.18
13 16 0.47
14 11 0.32
15 1 0.03
ACGTcount: A:0.02, C:0.06, G:0.09, T:0.83
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:4654614 original size:51 final size:51
Alignment explanation
Indices: 4654573--4654770 Score: 188
Period size: 48 Copynumber: 3.9 Consensus size: 51
4654563 GGTTCCTTTC
* * * * *
4654573 AGCAGAGGCTCAACAACTTTAAAAGTTTTCAACTTGAAAAAGACTCTTCTC
1 AGCAGAAGCTCAACAACTTTAAAAGTTTTCATCTTGAAAAAGGCTCATCTA
* * * * * *
4654624 AGCGGAAGCTTAATAACTTTAATGAAATTCTCATTTTGAAAAA-GCTCATCTA
1 AGCAGAAGCTCAACAACTTTAA--AAGTTTTCATCTTGAAAAAGGCTCATCTA
* *
4654676 AGCAGAAGCTTAACAATTTTAAAA-TTTT-ATCTTGAAAAA-GCTCATCTA
1 AGCAGAAGCTCAACAACTTTAAAAGTTTTCATCTTGAAAAAGGCTCATCTA
* * *
4654724 AGAAGAGGCTCAACAACTTTAAAAGAATTTTCATTTTGAAAAAGGCT
1 AGCAGAAGCTCAACAACTTTAAAAG--TTTTCATCTTGAAAAAGGCT
4654771 TTTCTAGGTA
Statistics
Matches: 119, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
48 39 0.33
49 3 0.03
50 2 0.02
51 22 0.18
52 35 0.29
53 18 0.15
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (51 bp):
AGCAGAAGCTCAACAACTTTAAAAGTTTTCATCTTGAAAAAGGCTCATCTA
Found at i:4654688 original size:52 final size:51
Alignment explanation
Indices: 4654573--4654767 Score: 175
Period size: 52 Copynumber: 3.8 Consensus size: 51
4654563 GGTTCCTTTC
* * ** ** * *
4654573 AGCAGAGGCTCAACAACTTTAA-AAGTTTTCAACTTGAAAAAGACTCTTCTC
1 AGCAGAAGCTTAACAACTTTAATAAAATTTCATTTTGAAAAAG-CTCATCTA
* * *
4654624 AGCGGAAGCTTAATAACTTTAATGAAATTCTCATTTTGAAAAAGCTCATCTA
1 AGCAGAAGCTTAACAACTTTAATAAAATT-TCATTTTGAAAAAGCTCATCTA
* *
4654676 AGCAGAAGCTTAACAA-TTT--TAAAATTTTATCTTGAAAAAGCTCATCTA
1 AGCAGAAGCTTAACAACTTTAATAAAATTTCATTTTGAAAAAGCTCATCTA
* * *
4654724 AGAAGAGGCTCAACAACTTTAA-AAGAATTTTCATTTTGAAAAAG
1 AGCAGAAGCTTAACAACTTTAATAA-AA-TTTCATTTTGAAAAAG
4654768 GCTTTTCTAG
Statistics
Matches: 116, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
48 33 0.28
49 9 0.08
50 2 0.02
51 23 0.20
52 37 0.32
53 12 0.10
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (51 bp):
AGCAGAAGCTTAACAACTTTAATAAAATTTCATTTTGAAAAAGCTCATCTA
Found at i:4654763 original size:100 final size:103
Alignment explanation
Indices: 4654573--4654767 Score: 236
Period size: 100 Copynumber: 1.9 Consensus size: 103
4654563 GGTTCCTTTC
* * * ** * *
4654573 AGCAGAGGCTCAACAACTTTAAAAGTTTTCAACTTGAAAAAGACTCTTCTCAGCGGAAGCTTAAT
1 AGCAGAAGCTCAACAACTTTAAAAGTTTTCAACTTGAAAAAGACTCATCTAAGAAGAAGCTCAAC
*
4654638 AACTTTAATGAAATTCTCATTTTGAAAAAGCTCATCTA
66 AACTTTAAAGAAATTCTCATTTTGAAAAAGCTCATCTA
* * * *
4654676 AGCAGAAGCTTAACAATTTTAAAA-TTTT-ATCTTGAAAAAG-CTCATCTAAGAAGAGGCTCAAC
1 AGCAGAAGCTCAACAACTTTAAAAGTTTTCAACTTGAAAAAGACTCATCTAAGAAGAAGCTCAAC
*
4654738 AACTTTAAA-AGAATTTTCATTTTGAAAAAG
66 AACTTTAAAGA-AATTCTCATTTTGAAAAAG
4654768 GCTTTTCTAG
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
99 1 0.01
100 41 0.53
101 11 0.14
102 4 0.05
103 21 0.27
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (103 bp):
AGCAGAAGCTCAACAACTTTAAAAGTTTTCAACTTGAAAAAGACTCATCTAAGAAGAAGCTCAAC
AACTTTAAAGAAATTCTCATTTTGAAAAAGCTCATCTA
Found at i:4655445 original size:297 final size:295
Alignment explanation
Indices: 4654967--4655538 Score: 702
Period size: 297 Copynumber: 1.9 Consensus size: 295
4654957 ACCTTAATAC
* **** *
4654967 TCGGATATCACCACTAAAGGAAATCGAATATCATCATCGAGAAAATGCAAATGATTTTTTAACGC
1 TCGGATATCACCACTAAAGGAAATCGAATATCATCATCGAGAAAATGCAAATAAAGCATTAACAC
** * *
4655032 TCGAATATCACCACCAAAAAGATGTAAATGACTTCAGATATCACTTCAAAGGAAACTCGAATATC
66 TCGAATATCACCACCAAAAAGATACAAATGACTTCAGATATCACTTCAAAAGAAACTCAAATATC
* * *
4655097 ACTATCGAGAAAGTGTAAACCAAACCTTAACACTCGGATATCACTACCGAGAATATGCAAATGAC
131 ACTATCGAGAAAATGTAAACCAAACCTTAACACTCGAATATCACCACCGAGAATATGCAAATGAC
* * *
4655162 TTCGGATATCGCCATCGAAGAAAACTCGAATATCACCATAAAAAAAATGTAAATCAAACTTTAAC
196 TTCAGATATCGCCACCGAAGAAAACTCGAATATCACCATAAAAAAAATGCAAATCAAACTTTAAC
*
4655227 ACTCGGATTTCACCACCGAGAATATGCAAATGACT
261 ACTCGGATATCACCACCGAGAATATGCAAATGACT
** * * *
4655262 TCGGATATCGTCACTGAAGGAAACTCGAATATCA-CAATCGAGAAAATGTAATTAAAGCATTAAC
1 TCGGATATCACCACTAAAGGAAA-TCGAATATCATC-ATCGAGAAAATGCAAATAAAGCATTAAC
* * * *
4655326 ACTCGGATATCACCACCAAGAATATACAAATGACTTCGGATATTGCCAC-T-AAAAGAAACTCAA
64 ACTCGAATATCACCACCAAAAAGATACAAATGACTTCAGATA-T--CACTTCAAAAGAAACTCAA
*** * * *
4655389 ATATCA-TCATCGAGAAAATGTAATTGAGACTTTAACACTCGAATATCACCACCGAGAATATGTA
126 ATATCACT-ATCGAGAAAATGTAAACCAAACCTTAACACTCGAATATCACCACCGAGAATATGCA
* * * ** * *
4655453 AATGACTTCAGATATCGTCACCGAAGTAAACTCGAATATTACCATCGACAAAATGCAATTCAAAC
190 AATGACTTCAGATATCGCCACCGAAGAAAACTCGAATATCACCATAAAAAAAATGCAAATCAAAC
*
4655518 TTTAACACTTGGATATCACCA
255 TTTAACACTCGGATATCACCA
4655539 TAAAAAATAT
Statistics
Matches: 231, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
295 21 0.09
296 67 0.29
297 139 0.60
298 1 0.00
299 3 0.01
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (295 bp):
TCGGATATCACCACTAAAGGAAATCGAATATCATCATCGAGAAAATGCAAATAAAGCATTAACAC
TCGAATATCACCACCAAAAAGATACAAATGACTTCAGATATCACTTCAAAAGAAACTCAAATATC
ACTATCGAGAAAATGTAAACCAAACCTTAACACTCGAATATCACCACCGAGAATATGCAAATGAC
TTCAGATATCGCCACCGAAGAAAACTCGAATATCACCATAAAAAAAATGCAAATCAAACTTTAAC
ACTCGGATATCACCACCGAGAATATGCAAATGACT
Found at i:4655548 original size:99 final size:99
Alignment explanation
Indices: 4654967--4655552 Score: 593
Period size: 99 Copynumber: 5.9 Consensus size: 99
4654957 ACCTTAATAC
* ** * * * * *** *
4654967 TCGGATATCACCACTAAAGGAAA-TCGAATATCATCATCGAGAAAATGCAAATGATTTTTTAACG
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
* * * *
4655031 CTCGAATATCACCACCAAAAAGATGTAAATGACT
66 CTCGGATATCACCACCAAGAATATGCAAATGACT
* * ** * * * ** *
4655065 TCAGATATC-ACTTCAAAGGAAACTCGAATATCACTATCGAGAAAGTGTAAACCAAACCTTAACA
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
* *
4655129 CTCGGATATCACTACCGAGAATATGCAAATGACT
66 CTCGGATATCACCACCAAGAATATGCAAATGACT
* * ** * *
4655163 TCGGATATCGCCATCGAAGAAAACTCGAATATCACCATAAAAAAAATGTAAATCAAACTTTAACA
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
* *
4655228 CTCGGATTTCACCACCGAGAATATGCAAATGACT
66 CTCGGATATCACCACCAAGAATATGCAAATGACT
* * * *
4655262 TCGGATATCGTCACTGAAGGAAACTCGAATATCACAATCGAGAAAATGTAATT-AAAGCATTAAC
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAA-CTTTAAC
*
4655326 ACTCGGATATCACCACCAAGAATATACAAATGACT
65 ACTCGGATATCACCACCAAGAATATGCAAATGACT
* ** * * * * *
4655361 TCGGATATTGCCACTAAAAGAAACTCAAATATCATCATCGAGAAAATGTAATTGAGACTTTAACA
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
* * *
4655426 CTCGAATATCACCACCGAGAATATGTAAATGACT
66 CTCGGATATCACCACCAAGAATATGCAAATGACT
* * * * * *
4655460 TCAGATATCGTCACCGAAGTAAACTCGAATATTACCATCGACAAAATGCAATTCAAACTTTAACA
1 TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
* ** *
4655525 CTTGGATATCACCATAAAAAATATGCAA
66 CTCGGATATCACCACCAAGAATATGCAA
4655553 TTAAAACCTT
Statistics
Matches: 401, Mismatches: 83, Indels: 7
0.82 0.17 0.01
Matches are distributed among these distances:
97 9 0.02
98 77 0.19
99 313 0.78
100 2 0.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.24
Consensus pattern (99 bp):
TCGGATATCGCCACCGAAGGAAACTCGAATATCACCATCGAGAAAATGTAATTCAAACTTTAACA
CTCGGATATCACCACCAAGAATATGCAAATGACT
Found at i:4655730 original size:126 final size:126
Alignment explanation
Indices: 4655488--4655797 Score: 350
Period size: 126 Copynumber: 2.5 Consensus size: 126
4655478 GTAAACTCGA
* * * * * * *** * * *
4655488 ATATTACCATCGACAAAATGCAATTCAAACTTTAACACTTGGATATCACCATAAAAAATATGCAA
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTCGAATATCACCACCGAGAAGATACAA
* ** * * * ** * *
4655553 TTAAAACCTTGATACTTGGATATCACCATCGAAAATATGTAATTTAAACCTTGACACTTGG
66 TTCAAATTTTAATGCTCGGATATCACCATAAAAAAAATGTAATTCAAACCTTGACACTTGG
* * *
4655614 ATATCACTACCGAAAAGATGCAATTCAAACCTTAACACTCGAATATCACCACTGAGAAGATACAA
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTCGAATATCACCACCGAGAAGATACAA
* * *
4655679 TTCAAATTTTAATGCTCGGATATCACTATAAAAAAAATGTAATTCAAACCTTGATATTTGG
66 TTCAAATTTTAATGCTCGGATATCACCATAAAAAAAATGTAATTCAAACCTTGACACTTGG
* *
4655740 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGGATATCACCACCGAGAA
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTCGAATATCACCACCGAGAA
4655798 CTTTGAAAAT
Statistics
Matches: 152, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
126 152 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.27
Consensus pattern (126 bp):
ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTCGAATATCACCACCGAGAAGATACAA
TTCAAATTTTAATGCTCGGATATCACCATAAAAAAAATGTAATTCAAACCTTGACACTTGG
Found at i:4655791 original size:42 final size:42
Alignment explanation
Indices: 4655488--4655794 Score: 283
Period size: 42 Copynumber: 7.3 Consensus size: 42
4655478 GTAAACTCGA
* * * *
4655488 ATATTACCATCGACAAAATGCAATTCAAACTTTAACACTTGG
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
** * * *
4655530 ATATCACCA-TAAAAAATATGCAATTAAAACCTTGATACTTGG
1 ATATCACCACCGAAAAA-ATGCAATTCAAACCTTAACACTTGG
* * * * *
4655572 ATATCACCATCGAAAATATGTAATTTAAACCTTGACACTTGG
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
* * * *
4655614 ATATCACTACCGAAAAGATGCAATTCAAACCTTAACACTCGA
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
* * * * ** ** *
4655656 ATATCACCACTGAGAAGATACAATTCAAATTTTAATGCTCGG
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
* *** * * * *
4655698 ATATCACTATAAAAAAAATGTAATTCAAACCTTGATATTTGG
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
4655740 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
1 ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
4655782 ATATCACCACCGA
1 ATATCACCACCGA
4655795 GAACTTTGAA
Statistics
Matches: 210, Mismatches: 53, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
41 4 0.02
42 202 0.96
43 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (42 bp):
ATATCACCACCGAAAAAATGCAATTCAAACCTTAACACTTGG
Found at i:4656055 original size:35 final size:35
Alignment explanation
Indices: 4656002--4656106 Score: 142
Period size: 35 Copynumber: 3.0 Consensus size: 35
4655992 GAACACCATT
** *
4656002 ATGATGCAAATGAAATGCAAATATCTTTTCTTAAA
1 ATGATGCTCATGAAATGCAAATGTCTTTTCTTAAA
*
4656037 ATGATGCTCATGAGATGCAAATGTCTTTTCTTAAA
1 ATGATGCTCATGAAATGCAAATGTCTTTTCTTAAA
*
4656072 AAGATG-TACATGAAATGCAAATGTCTTTT-TTAAA
1 ATGATGCT-CATGAAATGCAAATGTCTTTTCTTAAA
4656106 A
1 A
4656107 ATGCTAATGC
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
34 7 0.11
35 56 0.89
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (35 bp):
ATGATGCTCATGAAATGCAAATGTCTTTTCTTAAA
Found at i:4657025 original size:14 final size:14
Alignment explanation
Indices: 4657006--4657038 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
4656996 ATTCTTTTAG
4657006 TTTTTTTTTT--CT
1 TTTTTTTTTTAGCT
4657018 TTTTTTTTTTAGCT
1 TTTTTTTTTTAGCT
4657032 TTTTTTT
1 TTTTTTT
4657039 CTAACAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
14 9 0.47
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTTAGCT
Found at i:4662462 original size:23 final size:23
Alignment explanation
Indices: 4662436--4662480 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
4662426 TAATAAATTT
* *
4662436 AAAA-TAACAAAAATAATATTTAA
1 AAAATTAAAAAAAAAAAT-TTTAA
4662459 AAAATTAAAAAAAAAAATTTTA
1 AAAATTAAAAAAAAAAATTTTA
4662481 CACCTGAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATTAAAAAAAAAAATTTTAA
Found at i:4662466 original size:29 final size:27
Alignment explanation
Indices: 4662421--4662476 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
4662411 AACATGCATA
*
4662421 AATATTAATAAATTTAAAATAACAAAAAT
1 AATATTAATAAAATTAAAA-AA-AAAAAT
4662450 AATATTTAA-AAAATTAAAAAAAAAAAT
1 AATA-TTAATAAAATTAAAAAAAAAAAT
4662477 TTTACACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 6 0.24
28 2 0.08
29 13 0.52
30 4 0.16
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (27 bp):
AATATTAATAAAATTAAAAAAAAAAAT
Found at i:4663540 original size:11 final size:11
Alignment explanation
Indices: 4663526--4663550 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4663516 CAAAAAAACT
4663526 AAAATAAAATA
1 AAAATAAAATA
4663537 AAAATAAAATA
1 AAAATAAAATA
4663548 AAA
1 AAA
4663551 TATGGGCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:4663544 original size:16 final size:17
Alignment explanation
Indices: 4663519--4663552 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
4663509 AATTTAACAA
4663519 AAAAACTAAAATAAAAT
1 AAAAACTAAAATAAAAT
4663536 AAAAA-TAAAATAAAAT
1 AAAAACTAAAATAAAAT
4663552 A
1 A
4663553 TGGGCTGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAACTAAAATAAAAT
Done.