Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 43 of 64
Found at i:6781425 original size:22 final size:23
Alignment explanation
Indices: 6781345--6781428 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 23
6781335 CCCAAAAGTT
* *
6781345 TTAATTGTAATTTA-ATTTTAATA
1 TTAATTTTAATTTAGA-TTTACTA
* * *
6781368 TTAATCTTGATTTTGATTTTACTA
1 TTAATTTTAATTTAGA-TTTACTA
6781392 TTAATTTTAATTTAGATTTA-TA
1 TTAATTTTAATTTAGATTTACTA
6781414 TT-ATTTTAAATTTAG
1 TTAATTTT-AATTTAG
6781429 TTTTGATTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.10
22 11 0.22
23 14 0.27
24 21 0.41
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.58
Consensus pattern (23 bp):
TTAATTTTAATTTAGATTTACTA
Found at i:6782511 original size:38 final size:38
Alignment explanation
Indices: 6782442--6782514 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
6782432 ATTTGGTAAT
6782442 TTTATTTATTTATTTAATTTATTTGTATTAAAATTCTG
1 TTTATTTATTTATTTAATTTATTTGTATTAAAATTCTG
* * * *
6782480 TTTATTTCTTT-TTTTATTTATCTTTTCTTAAAATT
1 TTTATTTATTTATTTAATTTAT-TTGTATTAAAATT
6782515 AAAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 9 0.30
38 21 0.70
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (38 bp):
TTTATTTATTTATTTAATTTATTTGTATTAAAATTCTG
Found at i:6782599 original size:2 final size:2
Alignment explanation
Indices: 6782592--6782626 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
6782582 TTAAATTTTA
6782592 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6782627 GAATTCTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6784222 original size:16 final size:16
Alignment explanation
Indices: 6784198--6784228 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6784188 AAGTTTTCCC
*
6784198 CTCATAAATATAAAAT
1 CTCAGAAATATAAAAT
6784214 CTCAGAAATATAAAA
1 CTCAGAAATATAAAA
6784229 AATTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (16 bp):
CTCAGAAATATAAAAT
Found at i:6784996 original size:21 final size:21
Alignment explanation
Indices: 6784971--6785013 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6784961 TAAGATATTT
*
6784971 AATATAATATTAAAATTTTAA
1 AATATAATATTAAAATTATAA
*
6784992 AATATAATATTTAAATTATAA
1 AATATAATATTAAAATTATAA
6785013 A
1 A
6785014 TTTATTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATAATATTAAAATTATAA
Found at i:6789496 original size:18 final size:18
Alignment explanation
Indices: 6789442--6789528 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 18
6789432 ATATATTCTA
* * *
6789442 ATTTTTTTGTTTGTTACT
1 ATTTTTTTATGTGTTATT
* * *
6789460 ACTTTTTTCTGTG-AATT
1 ATTTTTTTATGTGTTATT
*
6789477 ATTTTTTTATGTGTTGTT
1 ATTTTTTTATGTGTTATT
* *
6789495 ATTTTTATAT-TG-AATT
1 ATTTTTTTATGTGTTATT
6789511 ATTATTTTTATGTGTTAT
1 ATT-TTTTTATGTGTTAT
6789529 GAATTGTCAA
Statistics
Matches: 51, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
16 5 0.10
17 21 0.41
18 23 0.45
19 2 0.04
ACGTcount: A:0.18, C:0.03, G:0.11, T:0.67
Consensus pattern (18 bp):
ATTTTTTTATGTGTTATT
Found at i:6789499 original size:16 final size:16
Alignment explanation
Indices: 6789475--6789528 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 16
6789465 TTTCTGTGAA
6789475 TTATT-TTTTTATGTG
1 TTATTATTTTTATGTG
* *
6789490 TTGTTATTTTTATATTG
1 TTATTATTTTTAT-GTG
6789507 AATTATTATTTTTATGTG
1 --TTATTATTTTTATGTG
6789525 TTAT
1 TTAT
6789529 GAATTGTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 4 0.13
16 11 0.35
17 2 0.06
18 2 0.06
19 12 0.39
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.69
Consensus pattern (16 bp):
TTATTATTTTTATGTG
Found at i:6789653 original size:23 final size:23
Alignment explanation
Indices: 6789618--6789667 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
6789608 TAGTGTTACA
6789618 ATTTTTTTATATAAATTACCATT
1 ATTTTTTTATATAAATTACCATT
*
6789641 ATTTTTTCT-TATAAATTATCATT
1 ATTTTTT-TATATAAATTACCATT
6789664 -TTTT
1 ATTTT
6789668 CTAAGGTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 4 0.16
23 20 0.80
24 1 0.04
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (23 bp):
ATTTTTTTATATAAATTACCATT
Found at i:6790268 original size:14 final size:15
Alignment explanation
Indices: 6790251--6790280 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6790241 AGATAATTAT
6790251 AAAATTAT-AATAAA
1 AAAATTATAAATAAA
6790265 AAAATTATAAATAAA
1 AAAATTATAAATAAA
6790280 A
1 A
6790281 TGTTCTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATTATAAATAAA
Found at i:6790611 original size:21 final size:22
Alignment explanation
Indices: 6790587--6790629 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
6790577 ATGTTTTTTA
6790587 TTTTTA-TTTTTTTAAAAATAG
1 TTTTTATTTTTTTTAAAAATAG
6790608 TTTTTATTTTTTTTTAAAAATA
1 TTTTTA-TTTTTTTTAAAAATA
6790630 TACTTGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.30
23 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTATTTTTTTTAAAAATAG
Found at i:6800123 original size:23 final size:23
Alignment explanation
Indices: 6800097--6800164 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
6800087 TTAAAGAGAA
6800097 CTTTTGAAATTTTGGATGTAAAT
1 CTTTTGAAATTTTGGATGTAAAT
** ** *
6800120 CTTTAAAAATTTTTAAGTGT-GAT
1 CTTTTGAAATTTTGGA-TGTAAAT
*
6800143 C-TTTGAAATTTTGGATATAAAT
1 CTTTTGAAATTTTGGATGTAAAT
6800165 TCCTAAATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 5
0.67 0.23 0.10
Matches are distributed among these distances:
21 2 0.06
22 12 0.38
23 15 0.47
24 3 0.09
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (23 bp):
CTTTTGAAATTTTGGATGTAAAT
Found at i:6800518 original size:17 final size:16
Alignment explanation
Indices: 6800448--6800515 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 16
6800438 AATTCTTACG
*
6800448 TTCTTGCAAACCTTAAA
1 TTCTTACAAA-CTTAAA
* *
6800465 TTTTTACGAATCTTTAAA
1 TTCTTAC-AAAC-TTAAA
*
6800483 TTCTTGCAAACTTGAAA
1 TTCTTACAAACTT-AAA
6800500 TTCTTACAAACTTAAA
1 TTCTTACAAACTTAAA
6800516 ATTTTTACGA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
16 5 0.12
17 24 0.59
18 12 0.29
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.40
Consensus pattern (16 bp):
TTCTTACAAACTTAAA
Found at i:6800523 original size:17 final size:17
Alignment explanation
Indices: 6800462--6800537 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
6800452 TGCAAACCTT
* *
6800462 AAATTTTTACGAATCTTT
1 AAATTTTTAC-AAACTTG
* *
6800480 AAATTCTTGCAAACTTG
1 AAATTTTTACAAACTTG
* *
6800497 AAATTCTTACAAACTTA
1 AAATTTTTACAAACTTG
* *
6800514 AAATTTTTACGAGCTTG
1 AAATTTTTACAAACTTG
6800531 AAATTTT
1 AAATTTT
6800538 GAAAATCTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
17 40 0.83
18 8 0.17
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (17 bp):
AAATTTTTACAAACTTG
Found at i:6800719 original size:16 final size:17
Alignment explanation
Indices: 6800686--6800728 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 17
6800676 ATCTAAGTTG
6800686 TTATGAATATGAAAATC
1 TTATGAATATGAAAATC
*
6800703 TTTTGAATATG-AAATC
1 TTATGAATATGAAAATC
6800719 TTATGAATAT
1 TTATGAATAT
6800729 TTCATTCTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (17 bp):
TTATGAATATGAAAATC
Found at i:6801357 original size:6 final size:6
Alignment explanation
Indices: 6801336--6801437 Score: 64
Period size: 6 Copynumber: 16.7 Consensus size: 6
6801326 TGCCCAAAAG
* * * * * *
6801336 TTTTAA TTGTAA -TTTAA TTTTAA TATTAA TCTTGA TTTTGA TTTTAC
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
* * * *
6801383 TATTAA TTTTAA -TTTAGA TTTATATTA TTTTAA ATTTAG TTTTGA TTTTAA
1 TTTTAA TTTTAA TTTTA-A TTT-TA--A TTTTAA TTTTAA TTTTAA TTTTAA
6801434 TTTT
1 TTTT
6801438 GTTAAAAAAA
Statistics
Matches: 73, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
5 8 0.11
6 55 0.75
7 2 0.03
8 4 0.05
9 4 0.05
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (6 bp):
TTTTAA
Found at i:6801418 original size:22 final size:23
Alignment explanation
Indices: 6801338--6801421 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 23
6801328 CCCAAAAGTT
* *
6801338 TTAATTGTAATTTA-ATTTTAATA
1 TTAATTTTAATTTAGA-TTTACTA
* * *
6801361 TTAATCTTGATTTTGATTTTACTA
1 TTAATTTTAATTTAGA-TTTACTA
6801385 TTAATTTTAATTTAGATTTA-TA
1 TTAATTTTAATTTAGATTTACTA
6801407 TT-ATTTTAAATTTAG
1 TTAATTTT-AATTTAG
6801422 TTTTGATTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.10
22 11 0.22
23 14 0.27
24 21 0.41
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.58
Consensus pattern (23 bp):
TTAATTTTAATTTAGATTTACTA
Found at i:6804972 original size:21 final size:21
Alignment explanation
Indices: 6804947--6804989 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6804937 TAATGTATTT
*
6804947 AATATAATATTAAAATTTTAA
1 AATATAATATTAAAATTATAA
*
6804968 AATATAATATTTAAATTATAA
1 AATATAATATTAAAATTATAA
6804989 A
1 A
6804990 TTTATTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATAATATTAAAATTATAA
Found at i:6809231 original size:19 final size:19
Alignment explanation
Indices: 6809209--6809261 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
6809199 TTTTTTTTTT
*
6809209 TGTGTTACTAATTTTGTTA
1 TGTGTTACTAATTTTCTTA
6809228 TGTGTTA-TAACTTTCTCTTA
1 TGTGTTACTAA-TTT-TCTTA
*
6809248 TATGTTACT-ATTTT
1 TGTGTTACTAATTTT
6809262 TTTTTATGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
18 4 0.14
19 13 0.45
20 11 0.38
21 1 0.03
ACGTcount: A:0.21, C:0.09, G:0.11, T:0.58
Consensus pattern (19 bp):
TGTGTTACTAATTTTCTTA
Found at i:6809488 original size:18 final size:18
Alignment explanation
Indices: 6809434--6809520 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 18
6809424 ATATATTCTA
* * *
6809434 ATTTTTTTGTTTGTTACT
1 ATTTTTTTATGTGTTATT
* * *
6809452 ACTTTTTTCTGTG-AATT
1 ATTTTTTTATGTGTTATT
*
6809469 ATTTTTTTATGTGTTGTT
1 ATTTTTTTATGTGTTATT
* *
6809487 ATTTTTATAT-TG-AATT
1 ATTTTTTTATGTGTTATT
6809503 ATTATTTTTATGTGTTAT
1 ATT-TTTTTATGTGTTAT
6809521 GAATTGTCAA
Statistics
Matches: 51, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
16 5 0.10
17 21 0.41
18 23 0.45
19 2 0.04
ACGTcount: A:0.18, C:0.03, G:0.11, T:0.67
Consensus pattern (18 bp):
ATTTTTTTATGTGTTATT
Found at i:6809491 original size:16 final size:16
Alignment explanation
Indices: 6809467--6809520 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 16
6809457 TTTCTGTGAA
6809467 TTATT-TTTTTATGTG
1 TTATTATTTTTATGTG
* *
6809482 TTGTTATTTTTATATTG
1 TTATTATTTTTAT-GTG
6809499 AATTATTATTTTTATGTG
1 --TTATTATTTTTATGTG
6809517 TTAT
1 TTAT
6809521 GAATTGTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 4 0.13
16 11 0.35
17 2 0.06
18 2 0.06
19 12 0.39
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.69
Consensus pattern (16 bp):
TTATTATTTTTATGTG
Found at i:6809659 original size:20 final size:22
Alignment explanation
Indices: 6809610--6809657 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
6809600 ATGTGTTACA
6809610 ATTTTT-TATATAAATTACCATT
1 ATTTTTCT-TATAAATTACCATT
*
6809632 ATTTTTCTTATAAATTATCATT
1 ATTTTTCTTATAAATTACCATT
6809654 -TTTT
1 ATTTT
6809658 CTAAGGTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 19 0.79
23 1 0.04
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTTTCTTATAAATTACCATT
Found at i:6810265 original size:14 final size:15
Alignment explanation
Indices: 6810248--6810277 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6810238 ACATAATTAT
6810248 AAAATTAT-AATAAA
1 AAAATTATAAATAAA
6810262 AAAATTATAAATAAA
1 AAAATTATAAATAAA
6810277 A
1 A
6810278 TGTTCTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATTATAAATAAA
Found at i:6815545 original size:2 final size:2
Alignment explanation
Indices: 6815538--6815570 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6815528 ATTTGTTATG
6815538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6815571 GATAGATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6815575 original size:4 final size:4
Alignment explanation
Indices: 6815568--6815595 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
6815558 ATATATATAT
6815568 ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG
6815596 GCTTAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:6821257 original size:24 final size:24
Alignment explanation
Indices: 6821227--6821272 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6821217 AATGTTTAAA
*
6821227 AAAATATATAAATAATAAAATATT
1 AAAATATACAAATAATAAAATATT
*
6821251 AAAATATACAGATAATAAAATA
1 AAAATATACAAATAATAAAATA
6821273 ATTTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATATACAAATAATAAAATATT
Found at i:6829546 original size:11 final size:11
Alignment explanation
Indices: 6829527--6829563 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6829517 CCATAACATT
*
6829527 ATATGAAAATA
1 ATATAAAAATA
6829538 ATAT-AAAA-A
1 ATATAAAAATA
6829547 ATATAAAAATA
1 ATATAAAAATA
6829558 ATATAA
1 ATATAA
6829564 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 5 0.21
10 8 0.33
11 11 0.46
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
ATATAAAAATA
Found at i:6834264 original size:6 final size:6
Alignment explanation
Indices: 6834255--6834290 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
6834245 CTCTCTCTCT
*
6834255 CACACA CACACCC CACACC CACACC CACACC CACAC
1 CACACC CACA-CC CACACC CACACC CACACC CACAC
6834291 ACCTACCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (6 bp):
CACACC
Found at i:6842536 original size:7 final size:7
Alignment explanation
Indices: 6842524--6842631 Score: 76
Period size: 7 Copynumber: 15.0 Consensus size: 7
6842514 GGATGGCTTA
6842524 TTTTATT
1 TTTTATT
6842531 TTTTATT
1 TTTTATT
* *
6842538 TTGTATA
1 TTTTATT
6842545 TTTTA-T
1 TTTTATT
6842551 TTTTA-T
1 TTTTATT
6842557 TTTTATT
1 TTTTATT
*
6842564 TTATATT
1 TTTTATT
6842571 TTTATATT
1 TTT-TATT
6842579 TTTATATT
1 TTT-TATT
*
6842587 TTTCTTTT
1 TTT-TATT
* *
6842595 TCTTTGTA
1 T-TTTATT
6842603 TTTTATGT
1 TTTTAT-T
*
6842611 ATTTATT
1 TTTTATT
*
6842618 ATTTATT
1 TTTTATT
*
6842625 TATTATT
1 TTTTATT
6842632 ACTATTTGTT
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
6 11 0.13
7 42 0.51
8 27 0.33
9 2 0.02
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTATT
Found at i:6842548 original size:21 final size:20
Alignment explanation
Indices: 6842522--6842623 Score: 95
Period size: 20 Copynumber: 5.0 Consensus size: 20
6842512 ATGGATGGCT
6842522 TATTTTATTTTTTATTTTGTA
1 TATTTTATTTTTTATTTT-TA
6842543 TATTTTA-TTTTTATTTTTA
1 TATTTTATTTTTTATTTTTA
6842562 T-TTTATATTTTTATATTTTTA
1 TATTT-TATTTTT-TATTTTTA
* * *
6842583 TATTTT-TCTTTT-TCTTTG
1 TATTTTATTTTTTATTTTTA
*
6842601 TATTTTATGTATTTATTATTTA
1 TATTTTAT-TTTTTATT-TTTA
6842623 T
1 T
6842624 TTATTATTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
18 13 0.20
19 7 0.11
20 21 0.32
21 18 0.27
22 7 0.11
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (20 bp):
TATTTTATTTTTTATTTTTA
Found at i:6842563 original size:33 final size:32
Alignment explanation
Indices: 6842524--6842631 Score: 96
Period size: 33 Copynumber: 3.2 Consensus size: 32
6842514 GGATGGCTTA
*
6842524 TTTTATTTTTTATTTTGTATATTTTATTTTTAT
1 TTTTATTTTATATTTT-TATATTTTATTTTTAT
6842557 TTTTATTTTATATTTTTATATTTTTATATTTT-T
1 TTTTATTTTATATTTTTATA-TTTTAT-TTTTAT
* *
6842590 CTTTT-TCTTTGTA-TTTTATGTATTTATTATTTAT
1 -TTTTAT-TTTATATTTTTATAT-TTTATT-TTTAT
6842624 TTATTATT
1 TT-TTATT
6842632 ACTATTTGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
32 6 0.10
33 39 0.62
34 17 0.27
35 1 0.02
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (32 bp):
TTTTATTTTATATTTTTATATTTTATTTTTAT
Found at i:6842575 original size:8 final size:8
Alignment explanation
Indices: 6842527--6842589 Score: 60
Period size: 8 Copynumber: 7.9 Consensus size: 8
6842517 TGGCTTATTT
6842527 TATTTTT-
1 TATTTTTA
6842534 TATTTTGTA
1 TATTTT-TA
6842543 TA-TTTTA
1 TATTTTTA
*
6842550 T-TTTTATT
1 TATTTT-TA
*
6842558 TTTATTTTA
1 TAT-TTTTA
6842567 TATTTTTA
1 TATTTTTA
6842575 TATTTTTA
1 TATTTTTA
6842583 TATTTTT
1 TATTTTT
6842590 CTTTTTCTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
7 12 0.26
8 26 0.55
9 6 0.13
10 3 0.06
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.78
Consensus pattern (8 bp):
TATTTTTA
Found at i:6842616 original size:41 final size:39
Alignment explanation
Indices: 6842522--6842608 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 39
6842512 ATGGATGGCT
*
6842522 TATTTTATTTTT-TATTTTGTATATTTTATTTTTATTTT
1 TATTTTATTTTTATATTTTGTATATTTTATTTTTATTTG
* *
6842560 TATTTTATATTTTTATATTTT-TATATTTTTCTTTTTCTTTG
1 TA-TTT-TATTTTTATATTTTGTATA-TTTTATTTTTATTTG
6842601 TATTTTAT
1 TATTTTAT
6842609 GTATTTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 2 0.05
39 6 0.14
40 14 0.33
41 20 0.48
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (39 bp):
TATTTTATTTTTATATTTTGTATATTTTATTTTTATTTG
Found at i:6842621 original size:34 final size:33
Alignment explanation
Indices: 6842536--6842621 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 33
6842526 TTATTTTTTA
*
6842536 TTTTGTATATTTTATTTTTATTTTTATTTTATAT
1 TTTTGTAT-TTTTATTTTTATTTTTACTTTATAT
* * *
6842570 TTTTATATTTTTATATTTT-TCTTTTTCTTTGTAT
1 TTTTGTATTTTTAT-TTTTAT-TTTTACTTTATAT
6842604 TTTATGTATTTATTATTT
1 TTT-TGTATTT-TTATTT
6842622 ATTTATTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
33 7 0.16
34 24 0.56
35 8 0.19
36 4 0.09
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (33 bp):
TTTTGTATTTTTATTTTTATTTTTACTTTATAT
Found at i:6842623 original size:4 final size:4
Alignment explanation
Indices: 6842604--6842798 Score: 54
Period size: 4 Copynumber: 49.8 Consensus size: 4
6842594 TTCTTTGTAT
* * *
6842604 TTTA TGTA TTTA -TTA TTTA TTTA -TTA TTACTA TTTG TTAATA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TT--TA TTTA
* * *
6842650 TTTA -TTA TTTA CTTA TTTA TTTA TTT- TATTA -TTA -TTA TTTA TATG
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA
* * * * ** * *
6842695 TTCA TATA TATA TTTA -TTA -TTA CTTA GCTA TTTA TATA -TTA TTACA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA
* ** * * *
6842741 TATA TGCA TTTA -TTA -TTA TTTA TCTA TTTA TATA TTATAA TTTA TCTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA
6842789 -TTA TTTA TTT
1 TTTA TTTA TTT
6842799 TAATTTATCT
Statistics
Matches: 139, Mismatches: 35, Indels: 34
0.67 0.17 0.16
Matches are distributed among these distances:
3 32 0.23
4 94 0.68
5 4 0.03
6 9 0.06
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (4 bp):
TTTA
Found at i:6842712 original size:30 final size:28
Alignment explanation
Indices: 6842613--6842716 Score: 92
Period size: 27 Copynumber: 3.8 Consensus size: 28
6842603 TTTTATGTAT
* *
6842613 TTAT-TATTTATTTATTATTACTATTTG
1 TTATATATATATTTATTATTATTATTTG
*
6842640 TTA-ATATATATTTATTATTTACTTATTTA
1 TTATATATATATTTATTA-TTA-TTATTTG
* *
6842669 TT-TAT-TTTA-TTATTATTATTTATATG
1 TTATATATATATTTATTATTA-TTATTTG
6842695 TTCATATATATATTTATTATTA
1 TT-ATATATATATTTATTATTA
6842717 CTTAGCTATT
Statistics
Matches: 61, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
26 10 0.16
27 21 0.34
28 9 0.15
29 12 0.20
30 9 0.15
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (28 bp):
TTATATATATATTTATTATTATTATTTG
Found at i:6842732 original size:30 final size:27
Alignment explanation
Indices: 6842610--6842737 Score: 97
Period size: 30 Copynumber: 4.6 Consensus size: 27
6842600 GTATTTTATG
6842610 TATTTAT-TATTTATTTATTATTAC-TA
1 TATTTATATA-TTATTTATTATTACTTA
*
6842636 TTTGTTA-ATATATATTTATTATTTACTTA
1 TAT-TTATATAT-TATTTATTA-TTACTTA
*
6842665 TTTATTTAT-T-TTA-TTATTATTATTTA
1 --TATTTATATATTATTTATTATTACTTA
6842691 TATGTTCATATATATATTTATTATTACTTA
1 TAT-TT-ATATAT-TATTTATTATTACTTA
6842721 GCTATTTATATATTATT
1 --TATTTATATATTATT
6842738 ACATATATGC
Statistics
Matches: 82, Mismatches: 4, Indels: 29
0.71 0.03 0.25
Matches are distributed among these distances:
24 3 0.04
25 2 0.02
26 11 0.13
27 21 0.26
28 7 0.09
29 9 0.11
30 22 0.27
31 4 0.05
32 3 0.04
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (27 bp):
TATTTATATATTATTTATTATTACTTA
Found at i:6842736 original size:22 final size:21
Alignment explanation
Indices: 6842709--6842778 Score: 70
Period size: 22 Copynumber: 3.3 Consensus size: 21
6842699 TATATATATT
6842709 TATTATTACTTAGCTATTTATA
1 TATTATTACTTA-CTATTTATA
* ** *
6842731 TATTATTACATA-TATGCATT
1 TATTATTACTTACTATTTATA
*
6842751 TATTATTATTTATCTATTTATA
1 TATTATTACTTA-CTATTTATA
6842773 TATTAT
1 TATTAT
6842779 AATTTATCTA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
20 15 0.41
22 22 0.59
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (21 bp):
TATTATTACTTACTATTTATA
Found at i:6842743 original size:42 final size:42
Alignment explanation
Indices: 6842697--6842778 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
6842687 TTTATATGTT
*
6842697 CATATATATATTTATTATTACTTAGCTATTTATATATTATTA
1 CATATATACATTTATTATTACTTAGCTATTTATATATTATTA
* * *
6842739 CATATATGCATTTATTATTATTTATCTATTTATATATTAT
1 CATATATACATTTATTATTACTTAGCTATTTATATATTAT
6842779 AATTTATCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (42 bp):
CATATATACATTTATTATTACTTAGCTATTTATATATTATTA
Found at i:6842808 original size:43 final size:43
Alignment explanation
Indices: 6842748--6842853 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
6842738 ACATATATGC
6842748 ATTTATTATT-ATTTATCTATTTATATATTATAATTTATCT-ATT
1 ATTTATT-TTAATTTATCTATTTA-ATATTATAATTTATCTGATT
* * *
6842791 ATTTATTTTAATTTATCT-GTTAATATTTTGATTTATCTGATT
1 ATTTATTTTAATTTATCTATTTAATATTATAATTTATCTGATT
*
6842833 ATTTTCTTTTAA-TTATCTATT
1 A-TTTATTTTAATTTATCTATT
6842854 ACTATTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
41 14 0.26
42 15 0.28
43 25 0.46
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (43 bp):
ATTTATTTTAATTTATCTATTTAATATTATAATTTATCTGATT
Found at i:6842849 original size:42 final size:41
Alignment explanation
Indices: 6842748--6842861 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 41
6842738 ACATATATGC
* *
6842748 ATTTATTATT-ATTTATCTATTTATATATTATAATTTATCTATT
1 ATTTATT-TTAATTTATCTA-TTA-ATATTTTGATTTATCTATT
*
6842791 ATTTATTTTAATTTATCTGTTAATATTTTGATTTATCTGATT
1 ATTTATTTTAATTTATCTATTAATATTTTGATTTATCT-ATT
* *
6842833 ATTTTCTTTTAA-TTATCTATTACTATTTT
1 A-TTTATTTTAATTTATCTATTAATATTTT
6842862 TTATTTGATT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
41 14 0.23
42 24 0.39
43 24 0.39
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (41 bp):
ATTTATTTTAATTTATCTATTAATATTTTGATTTATCTATT
Found at i:6842863 original size:21 final size:21
Alignment explanation
Indices: 6842758--6842864 Score: 94
Period size: 21 Copynumber: 5.0 Consensus size: 21
6842748 ATTTATTATT
* *
6842758 ATTTATCTATTTATATATTATA
1 ATTTATCTA-TTATATTTTTTA
6842780 ATTTATCTATTAT-TTATTTTA
1 ATTTATCTATTATATT-TTTTA
* * *
6842801 ATTTATCTGTTA-ATATTTTG
1 ATTTATCTATTATATTTTTTA
*
6842821 ATTTATCTGATTATTTTCTTTTA
1 ATTTATCT-ATTATATT-TTTTA
6842844 A-TTATCTATTACTATTTTTTA
1 ATTTATCTATTA-TATTTTTTA
6842865 TTTGATTTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
20 13 0.19
21 32 0.46
22 19 0.28
23 5 0.07
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.63
Consensus pattern (21 bp):
ATTTATCTATTATATTTTTTA
Found at i:6843753 original size:5 final size:5
Alignment explanation
Indices: 6843743--6843799 Score: 59
Period size: 5 Copynumber: 11.8 Consensus size: 5
6843733 TGTTTAATAT
*
6843743 TTTTA TTTTA TTTT- TCTTTA TTTTTA TTTT- CTTTA TTTTA TTTTA --TTA
1 TTTTA TTTTA TTTTA T-TTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
6843791 TTTTA TTTT
1 TTTTA TTTT
6843800 CTTTAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
3 3 0.07
4 4 0.09
5 32 0.73
6 4 0.09
7 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:6843764 original size:15 final size:14
Alignment explanation
Indices: 6843744--6843804 Score: 88
Period size: 15 Copynumber: 4.3 Consensus size: 14
6843734 GTTTAATATT
6843744 TTTATTTTATTTTTC
1 TTTATTTTA-TTTTC
6843759 TTTATTTTTATTTTC
1 TTTA-TTTTATTTTC
6843774 TTTATTTTATTTT-
1 TTTATTTTATTTTC
*
6843787 ATTATTTTATTTTC
1 TTTATTTTATTTTC
6843801 TTTA
1 TTTA
6843805 AATAAAATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
13 12 0.29
14 12 0.29
15 13 0.31
16 5 0.12
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTTATTTTC
Found at i:6843856 original size:27 final size:27
Alignment explanation
Indices: 6843826--6843915 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 27
6843816 AAAAAAAAAT
6843826 ATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTTGAGGAAAAGTTGAAAGTATCA
*
6843853 ATTTTTCTTGA-GAATAAGCTTTGTAAAATAT--
1 A--TTT-TTGAGGAA-AAG--TTG-AAAGTATCA
*
6843884 ATTTTTGAGTAAAAGTTGAAAGTATCA
1 ATTTTTGAGGAAAAGTTGAAAGTATCA
6843911 ATTTT
1 ATTTT
6843916 CCTTAAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 20
0.68 0.04 0.27
Matches are distributed among these distances:
25 6 0.12
26 3 0.06
27 6 0.12
28 7 0.14
29 11 0.22
30 7 0.14
31 1 0.02
32 3 0.06
33 6 0.12
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (27 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:6843886 original size:58 final size:57
Alignment explanation
Indices: 6843820--6843975 Score: 240
Period size: 58 Copynumber: 2.7 Consensus size: 57
6843810 AATTCAAAAA
* * **
6843820 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAGAATAAGCTTTGT
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTCC
* *
6843877 AAAATATATTTTTGAGTAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGCTTTCC
1 AAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTCC
6843935 AAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
1 AAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
6843976 CTGTACAAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
57 5 0.06
58 84 0.94
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (57 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTCC
Found at i:6855542 original size:42 final size:42
Alignment explanation
Indices: 6855449--6855691 Score: 262
Period size: 42 Copynumber: 5.7 Consensus size: 42
6855439 GCAATATACT
* * * * *
6855449 TTTTTAAAGTCATTGAGCCTCTAATTAGAGGAGC--CATTTA
1 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTAGTTA
*
6855489 CTTTCCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTAGTTA
1 -TTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTAGTTA
* *
6855533 TTTTCAAAGTCGTTGAACCTCTGATTAGAGAAGCTTTAGTTA
1 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTAGTTA
* * *
6855575 TTTTCAAAGTCGTTGAACTTCTGATTATG-GGAGCTTTATTTA
1 TTTTCAAAGTCGTTGAGCCTCTGATTA-GAGGAGCTTTAGTTA
*
6855617 TTTTCAAAGTCGTTGAGCCTCTGATTAGAAGAGCATTTTTTATGTT-
1 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC----TTTA-GTTA
*
6855663 TTTT-AAAGTCGTTGAGCCTCTGCTTAGAG
1 TTTTCAAAGTCGTTGAGCCTCTGATTAGAG
6855692 TAGTTTTGAT
Statistics
Matches: 174, Mismatches: 18, Indels: 16
0.84 0.09 0.08
Matches are distributed among these distances:
41 4 0.02
42 128 0.74
43 5 0.03
44 4 0.02
45 23 0.13
46 8 0.05
47 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (42 bp):
TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTAGTTA
Found at i:6855886 original size:7 final size:7
Alignment explanation
Indices: 6855874--6856040 Score: 72
Period size: 7 Copynumber: 23.0 Consensus size: 7
6855864 GGTAGGCCCA
6855874 TTTTATT
1 TTTTATT
6855881 TTTTATT
1 TTTTATT
* *
6855888 TTGTATC
1 TTTTATT
6855895 TTTTA-T
1 TTTTATT
6855901 TTTTATT
1 TTTTATT
*
6855908 TTATA-T
1 TTTTATT
*
6855914 TTATATT
1 TTTTATT
*
6855921 TTTTATA
1 TTTTATT
6855928 TTTTATAT
1 TTTTAT-T
*
6855936 TTTT-CT
1 TTTTATT
*
6855942 TTTT-CT
1 TTTTATT
*
6855948 TTGTATT
1 TTTTATT
6855955 TTATGTATT
1 TT-T-TATT
*
6855964 TATTATT
1 TTTTATT
6855971 TATTTATT
1 T-TTTATT
*
6855979 ATTACTATT
1 -TT-TTATT
* *
6855988 TGTTAAT
1 TTTTATT
* *
6855995 ATATATT
1 TTTTATT
6856002 TATTTATT
1 T-TTTATT
*
6856010 ATTTACTT
1 TTTTA-TT
*
6856018 ATTTATT
1 TTTTATT
6856025 TATTTATT
1 T-TTTATT
6856033 TTATTATT
1 TT-TTATT
6856041 ATTATTTATA
Statistics
Matches: 121, Mismatches: 26, Indels: 25
0.70 0.15 0.15
Matches are distributed among these distances:
6 21 0.17
7 54 0.45
8 36 0.30
9 10 0.08
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (7 bp):
TTTTATT
Found at i:6855914 original size:27 final size:27
Alignment explanation
Indices: 6855873--6855933 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
6855863 GGGTAGGCCC
* *
6855873 ATTTTATTTTTTATTTTGTATCTTTTAT
1 ATTTTATTTTATA-TTTATATCTTTTAT
*
6855901 -TTTTATTTTATATTTATATTTTTTAT
1 ATTTTATTTTATATTTATATCTTTTAT
6855927 ATTTTAT
1 ATTTTAT
6855934 ATTTTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (27 bp):
ATTTTATTTTATATTTATATCTTTTAT
Found at i:6855944 original size:22 final size:20
Alignment explanation
Indices: 6855874--6855945 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
6855864 GGTAGGCCCA
* *
6855874 TTTTATTTTTTATTTTGTAT
1 TTTTTTTTTTTATTTTATAT
* *
6855894 CTTTTATTTTTATTTTATAT
1 TTTTTTTTTTTATTTTATAT
*
6855914 TTATATTTTTTATATTTTATAT
1 TT-T-TTTTTTTTATTTTATAT
6855936 TTTTCTTTTT
1 TTTT-TTTTT
6855946 CTTTGTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
20 18 0.43
21 7 0.17
22 17 0.40
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (20 bp):
TTTTTTTTTTTATTTTATAT
Found at i:6855955 original size:40 final size:41
Alignment explanation
Indices: 6855879--6855955 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
6855869 GCCCATTTTA
* *
6855879 TTTTTTATTTTGTATCTTTTATTTTTATTTTATATTTATAT
1 TTTTTTATTTTATATCTTTTATTTTTACTTTATATTTATAT
* *
6855920 TTTTTATATTTTATAT-TTTTCTTTTT-CTTTGTATTT
1 TTTTT-TATTTTATATCTTTTATTTTTACTTTATATTT
6855956 TATGTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
40 8 0.26
41 14 0.45
42 9 0.29
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.77
Consensus pattern (41 bp):
TTTTTTATTTTATATCTTTTATTTTTACTTTATATTTATAT
Found at i:6855955 original size:47 final size:49
Alignment explanation
Indices: 6855874--6855977 Score: 119
Period size: 47 Copynumber: 2.1 Consensus size: 49
6855864 GGTAGGCCCA
*
6855874 TTTTATTTTTTATTTTGTATCTTTTATTTTTATTTTA-TATTTA-TATT
1 TTTTATATTTTATTTTGTATCTTTTATTTTTATTTTAGTATTTATTATT
6855921 TTTTATATTTTATATTT-T-TCTTTT-TCTTTGTATTTTATGTATTTATTATT
1 TTTTATATTTTAT-TTTGTATCTTTTAT-TTT-TATTTTA-GTATTTATTATT
6855971 TATTTAT
1 T-TTTAT
6855978 TATTACTATT
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
45 1 0.02
46 9 0.18
47 20 0.41
48 3 0.06
49 6 0.12
50 5 0.10
51 5 0.10
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (49 bp):
TTTTATATTTTATTTTGTATCTTTTATTTTTATTTTAGTATTTATTATT
Found at i:6855973 original size:4 final size:4
Alignment explanation
Indices: 6855954--6856126 Score: 71
Period size: 4 Copynumber: 44.5 Consensus size: 4
6855944 TTCTTTGTAT
* * *
6855954 TTTA TGTA TTTA -TTA TTTA TTTA -TTA TTACTA TTTG TTAATA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TT--TA TTTA
*
6856000 TTTA TTTA -TTA TTTA CTTA TTTA TTTA TTTA TTT- TATTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA
* * * * * * ** *
6856045 TTTA TATG TTCA TATA TATA TTTA -TTA -TTA CTTA GCTA TTTA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
6856091 -TTA TTATA TATA TGTA TTTA -TTA -TTA TTTA TCTA TT
1 TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
6856127 ATTAATTTTA
Statistics
Matches: 128, Mismatches: 27, Indels: 28
0.70 0.15 0.15
Matches are distributed among these distances:
3 30 0.23
4 89 0.70
5 3 0.02
6 6 0.05
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (4 bp):
TTTA
Found at i:6856031 original size:65 final size:62
Alignment explanation
Indices: 6855954--6856095 Score: 164
Period size: 63 Copynumber: 2.3 Consensus size: 62
6855944 TTCTTTGTAT
* *
6855954 TTTATGTATTTATTATTTATTTATTATTA-CTATTTGTTAATATATATTTATTTATTATTTACTT
1 TTTATTTATTTATTATTTA-TTATTATTATCTATATGTTAATATATA--TATTTATTA-TTACTT
6856018 A
62 A
* *
6856019 TTTATTTATTTA-T-TTTATTATTATTATTTATATGTTCATATATATATTTATTATTACTTA
1 TTTATTTATTTATTATTTATTATTATTATCTATATGTTAATATATATATTTATTATTACTTA
** *
6856079 GCTATTTATATATTATT
1 TTTATTTATTTATTATT
6856096 ATATATATGT
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
60 16 0.24
61 10 0.15
62 11 0.16
63 18 0.27
64 1 0.01
65 11 0.16
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (62 bp):
TTTATTTATTTATTATTTATTATTATTATCTATATGTTAATATATATATTTATTATTACTTA
Found at i:6856067 original size:38 final size:37
Alignment explanation
Indices: 6855954--6856118 Score: 115
Period size: 38 Copynumber: 4.3 Consensus size: 37
6855944 TTCTTTGTAT
* * * *
6855954 TTTATGTATTTATTATTTATTTATTATTACTATTTGTTAA
1 TTTAT-TA-TTATTATTTATATATTATTA-TATATATTTA
* * *
6855994 TATA-TATTTATT-TATTATTTACTTATT-TATTTATTTA
1 TTTATTA-TTATTAT-TTATATA-TTATTATATATATTTA
*
6856031 TTTTATTATTATTATTTATATGTTCA-TATATATATTTA
1 -TTTATTATTATTATTTATATATT-ATTATATATATTTA
* *
6856069 -TTATTACTTAGCTATTTATATATTATTATATATATGTA
1 TTTATTA-TTA-TTATTTATATATTATTATATATATTTA
6856107 TTTATTATTATT
1 TTTATTATTATT
6856119 TATCTATTAT
Statistics
Matches: 103, Mismatches: 11, Indels: 25
0.74 0.08 0.18
Matches are distributed among these distances:
36 6 0.06
37 17 0.17
38 63 0.61
39 14 0.14
40 3 0.03
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (37 bp):
TTTATTATTATTATTTATATATTATTATATATATTTA
Found at i:6856156 original size:20 final size:21
Alignment explanation
Indices: 6856116--6856199 Score: 73
Period size: 20 Copynumber: 4.0 Consensus size: 21
6856106 ATTTATTATT
*
6856116 ATTTATCTATTATTAATTTTA
1 ATTTATCTATTAATAATTTTA
*
6856137 ATTTATCTGTTAAT-ATTTTA
1 ATTTATCTATTAATAATTTTA
* * **
6856157 ATTTATCGAATTATTTTCTTTTA
1 ATTTATC-TATTA-ATAATTTTA
*
6856180 A-TTATCTATTAATATTTTTA
1 ATTTATCTATTAATAATTTTA
6856200 TTTGATTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
20 19 0.38
21 19 0.38
22 6 0.12
23 6 0.12
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTATCTATTAATAATTTTA
Found at i:6857106 original size:5 final size:5
Alignment explanation
Indices: 6857096--6857133 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
6857086 TATTTTTAAT
6857096 TTTTA TTTTA TTTTA TTTTTA TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
6857134 CTTTAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 3 0.10
5 22 0.73
6 5 0.17
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:6857113 original size:16 final size:17
Alignment explanation
Indices: 6857089--6857123 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
6857079 TGTTTAATAT
6857089 TTTTAATTTTTATTTTA
1 TTTTAATTTTTATTTTA
6857106 TTTT-ATTTTTATTTTA
1 TTTTAATTTTTATTTTA
6857122 TT
1 TT
6857124 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTAATTTTTATTTTA
Found at i:6857115 original size:24 final size:24
Alignment explanation
Indices: 6857086--6857133 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
6857076 AATTGTTTAA
6857086 TATTTTTAATTT-TTATTTTATTT
1 TATTTTTAATTTATTATTTTATTT
*
6857109 TATTTTTATTTTATTATTTTATTT
1 TATTTTTAATTTATTATTTTATTT
6857133 T
1 T
6857134 CTTTAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (24 bp):
TATTTTTAATTTATTATTTTATTT
Found at i:6857219 original size:57 final size:57
Alignment explanation
Indices: 6857151--6857477 Score: 437
Period size: 58 Copynumber: 5.7 Consensus size: 57
6857141 TAAAATTCAA
* * * *
6857151 AAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAGAATAAGCTTTCT
1 AAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
6857208 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
1 AAAAAATA-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
* *
6857266 AAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCC
1 AAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
* * * * *
6857323 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCA
1 AAAAAATATTTTGA-GAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
* *
6857381 AAAATGAAT-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTC-
1 AAAA--AATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGCTTTCT
* *
6857438 AAAAAAAATTTTG-GAGAAAAGTTAAAAGTATCAATTTTTC
1 AAAAAATATTTTGAGA-AAAAGTTGAAAGTATCAATTTTTC
6857478 CTACACAAAA
Statistics
Matches: 244, Mismatches: 19, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
55 4 0.02
56 28 0.11
57 71 0.29
58 130 0.53
59 8 0.03
60 3 0.01
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
Found at i:6857223 original size:28 final size:28
Alignment explanation
Indices: 6857191--6857282 Score: 75
Period size: 28 Copynumber: 3.2 Consensus size: 28
6857181 TCAATTTTCC
6857191 TTGAGAATAAGCTTTCTAAAAAATATTT
1 TTGAGAATAAGCTTTCTAAAAAATATTT
* * *
6857219 TTGAGAAAAAG--TT-GAAAGTATCAATTTTT
1 TTGAGAATAAGCTTTCTAAA--A--AATATTT
*
6857248 CTTGAAAATAAGCTTTCTAAAAAATA-TT
1 -TTGAGAATAAGCTTTCTAAAAAATATTT
6857276 TTGAGAA
1 TTGAGAA
6857283 AAAGTTGAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 17
0.66 0.11 0.23
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
27 7 0.15
28 12 0.25
29 9 0.19
30 9 0.19
31 1 0.02
32 2 0.04
33 3 0.06
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (28 bp):
TTGAGAATAAGCTTTCTAAAAAATATTT
Found at i:6857301 original size:115 final size:112
Alignment explanation
Indices: 6857150--6857477 Score: 453
Period size: 115 Copynumber: 2.9 Consensus size: 112
6857140 ATAAAATTCA
* *
6857150 AAAAAAAAATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAGAATAAGCTTTCTAAAAAAT
1 AAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGA-AATAAGCTTTC-AAAAAAT
*
6857215 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTC
64 ATTTTTGAG-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTC
*
6857265 TAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCCAAAAAAT
1 AAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG-AAATAAGCTTT-CAAAAAAT
* *
6857330 ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTC
64 ATTTTT-GAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTC
* *
6857380 AAAAATGAAT-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTCAAAAA
1 AAAAA--AATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAA-T-AAGCTTTCAAAAA
* * *
6857443 AAATTTTGGAGAAAAGTTAAAAGTATCAATTTTTC
62 ATATTTTTGAGAAAAGTTGAAAGTATCAATTTTTC
6857478 CTACACAAAA
Statistics
Matches: 193, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
114 25 0.13
115 121 0.63
116 41 0.21
117 6 0.03
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (112 bp):
AAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAATAAGCTTTCAAAAAATAT
TTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTC
Found at i:6859169 original size:40 final size:40
Alignment explanation
Indices: 6859076--6859193 Score: 103
Period size: 40 Copynumber: 3.0 Consensus size: 40
6859066 AAAGACGATA
** * * * *
6859076 TTTCTAAGATAAAAAATGTAATTTTTGTTGAAAAAATAATG
1 TTTCTAAGAT-AAAAATACAATCTTTATTGAAAAAATGACG
* * *
6859117 TTTTTAAAATAAAAATACAATCTTTATTGAAAAGATGACG
1 TTTCTAAGATAAAAATACAATCTTTATTGAAAAAATGACG
** * *
6859157 TTTCTAAGAT-AAAATACGGTCTTTACTGAAAACATGA
1 TTTCTAAGATAAAAATACAATCTTTATTGAAAAAATGA
6859194 AAAGAAATAT
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
39 23 0.37
40 31 0.50
41 8 0.13
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.36
Consensus pattern (40 bp):
TTTCTAAGATAAAAATACAATCTTTATTGAAAAAATGACG
Found at i:6860792 original size:16 final size:17
Alignment explanation
Indices: 6860753--6860792 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6860743 AAGCTATATC
*
6860753 TCAAAAAGAACAAACTA
1 TCAAAAACAACAAACTA
6860770 TCAAAAACAACAAACTA
1 TCAAAAACAACAAACTA
*
6860787 TTAAAA
1 TCAAAA
6860793 GCCATATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.65, C:0.17, G:0.03, T:0.15
Consensus pattern (17 bp):
TCAAAAACAACAAACTA
Found at i:6860875 original size:54 final size:54
Alignment explanation
Indices: 6860817--6860920 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
6860807 AAAAACCAAC
* * * *
6860817 TATCAATAGCTTTTAGCAGGAACCCTTGTCATATATAGCTAATACAAAAAGCAT
1 TATCAAGAGCCTTTAGCAGGAACACTTGTCATATATAGCTAACACAAAAAGCAT
* ***
6860871 TATCAAGAGCCTTTAGCTGGCTTACTTGTCATATATAGCTAACACAAAAA
1 TATCAAGAGCCTTTAGCAGGAACACTTGTCATATATAGCTAACACAAAAA
6860921 AAACTATCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (54 bp):
TATCAAGAGCCTTTAGCAGGAACACTTGTCATATATAGCTAACACAAAAAGCAT
Found at i:6864246 original size:57 final size:57
Alignment explanation
Indices: 6864185--6864334 Score: 194
Period size: 57 Copynumber: 2.6 Consensus size: 57
6864175 ATTAATCTTG
* * *
6864185 TCAACCTTTACATTACCATCCAAACCCCTTATATTC-TCTTAATCCCTTGTAGAATTC
1 TCAACCTCTACATTACCATCCAAACCCCTTATATTCTTCTT-ACCCCTTATAGAATTC
** * *
6864242 TCAACCTCTGTATTACCATCCAAACCTCTTATATTCTTCTTACCCCTTATAGTATTC
1 TCAACCTCTACATTACCATCCAAACCCCTTATATTCTTCTTACCCCTTATAGAATTC
* *
6864299 TTAGCCTCTACATTACCATCCAAACCCCTTTATATT
1 TCAACCTCTACATTACCATCCAAACCCC-TTATATT
6864335 ACTACCCTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 68 0.86
58 11 0.14
ACGTcount: A:0.27, C:0.32, G:0.03, T:0.38
Consensus pattern (57 bp):
TCAACCTCTACATTACCATCCAAACCCCTTATATTCTTCTTACCCCTTATAGAATTC
Found at i:6865869 original size:2 final size:2
Alignment explanation
Indices: 6865862--6865901 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
6865852 ATGCTACCAA
*
6865862 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6865902 GCATGCTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6869302 original size:17 final size:17
Alignment explanation
Indices: 6869274--6869312 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
6869264 TATTTTACAT
*
6869274 AAAAATTAATTTATATTA
1 AAAAATTAATTTA-AGTA
6869292 AAAAATT-ATTTAAGTA
1 AAAAATTAATTTAAGTA
6869308 AAAAA
1 AAAAA
6869313 AATTAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 5 0.25
18 7 0.35
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAAAATTAATTTAAGTA
Found at i:6876138 original size:2 final size:2
Alignment explanation
Indices: 6876131--6876161 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6876121 TCTAATTGGA
6876131 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6876162 AATGAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6879874 original size:2 final size:2
Alignment explanation
Indices: 6879867--6879891 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6879857 TAATTTGTTA
6879867 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6879892 ATTAGCAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6883948 original size:4 final size:4
Alignment explanation
Indices: 6883941--6883997 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
6883931 TCTTTTCATT
* * *
6883941 TTTA TTTA TTTT TTTA GTTTA TTCA TTTA TTTA CTTA TTT- TTATCA TTTA
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TT-T-A TTTA
6883991 TTTA TTT
1 TTTA TTT
6883998 TTAAAATATT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
3 2 0.05
4 34 0.79
5 5 0.12
6 2 0.05
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:6883968 original size:21 final size:21
Alignment explanation
Indices: 6883944--6883998 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
6883934 TTTCATTTTT
6883944 ATTTATTTTTTTAGTTTAT-TC
1 ATTTATTTTTTTA-TTTATATC
** *
6883965 ATTTATTTACTTATTTTTATC
1 ATTTATTTTTTTATTTATATC
6883986 ATTTATTTATTTT
1 ATTTATTT-TTTT
6883999 TAAAATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 4 0.15
21 21 0.78
22 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTATTTTTTTATTTATATC
Found at i:6886283 original size:3 final size:3
Alignment explanation
Indices: 6886277--6886301 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6886267 TAGAAGAAAA
6886277 TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC T
6886302 TAAATATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TAC
Found at i:6886927 original size:36 final size:36
Alignment explanation
Indices: 6886880--6886950 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
6886870 TATTAAGTTA
*
6886880 ATATTTTAAATTAAAATTTTGTATAAATAATAAAAG
1 ATATTTTAAATTAAAATTTTATATAAATAATAAAAG
6886916 ATATTTTAAATTAAAATTTTATATAAATAATAAAA
1 ATATTTTAAATTAAAATTTTATATAAATAATAAAA
6886951 TTTAGTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (36 bp):
ATATTTTAAATTAAAATTTTATATAAATAATAAAAG
Found at i:6886951 original size:19 final size:18
Alignment explanation
Indices: 6886891--6886953 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
6886881 TATTTTAAAT
6886891 TAAAATTTTGTATAAATAA
1 TAAAATTTT-TATAAATAA
*
6886910 TAAAAGATATTT-TAAAT--
1 T-AAA-ATTTTTATAAATAA
6886927 TAAAATTTTATATAAATAA
1 TAAAATTTT-TATAAATAA
6886946 TAAAATTT
1 TAAAATTT
6886954 AGTTTAACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 4 0.11
16 4 0.11
17 6 0.17
19 14 0.39
20 4 0.11
21 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
TAAAATTTTTATAAATAA
Found at i:6886960 original size:36 final size:36
Alignment explanation
Indices: 6886884--6886960 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
6886874 AAGTTAATAT
* *
6886884 TTTAAATTAAAATTTTGTATAAATAATAAAAGATAT
1 TTTAAATTAAAATTTTATATAAATAATAAAAGATAG
**
6886920 TTTAAATTAAAATTTTATATAAATAATAAAATTTAG
1 TTTAAATTAAAATTTTATATAAATAATAAAAGATAG
6886956 TTTAA
1 TTTAA
6886961 CTATAATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (36 bp):
TTTAAATTAAAATTTTATATAAATAATAAAAGATAG
Found at i:6888096 original size:10 final size:10
Alignment explanation
Indices: 6888065--6888234 Score: 71
Period size: 10 Copynumber: 16.9 Consensus size: 10
6888055 CTTATGTCAT
6888065 ATTTATAAAAA
1 ATTTA-AAAAA
*
6888076 ATTCAACAAAA
1 ATTTAA-AAAA
6888087 ATTT-AAAAA
1 ATTTAAAAAA
*
6888096 ATTTTAAAAA
1 ATTTAAAAAA
6888106 A-TTAAAAAA
1 ATTTAAAAAA
**
6888115 ATTCTCAAAAGT
1 ATT-T-AAAAAA
* **
6888127 TTTTAAAATT
1 ATTTAAAAAA
* *
6888137 TTTTTAAAAA
1 ATTTAAAAAA
* *
6888147 GTTTATAAAA
1 ATTTAAAAAA
6888157 ATTCT-AAAAA
1 ATT-TAAAAAA
* *
6888167 ATTTTAAAAT
1 ATTTAAAAAA
*
6888177 CTTTAACAAAA
1 ATTTAA-AAAA
*
6888188 ATCT-AAAAA
1 ATTTAAAAAA
* *
6888197 ACTTATAAAA
1 ATTTAAAAAA
* *
6888207 ATTCAAAATA
1 ATTTAAAAAA
6888217 ATTT-AAAAA
1 ATTTAAAAAA
*
6888226 TTTTAAAAA
1 ATTTAAAAA
6888235 TTCTGAAAAA
Statistics
Matches: 118, Mismatches: 31, Indels: 21
0.69 0.18 0.12
Matches are distributed among these distances:
9 30 0.25
10 63 0.53
11 19 0.16
12 6 0.05
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (10 bp):
ATTTAAAAAA
Found at i:6888097 original size:9 final size:9
Alignment explanation
Indices: 6888083--6888247 Score: 80
Period size: 10 Copynumber: 16.9 Consensus size: 9
6888073 AAAATTCAAC
6888083 AAAAATTTA
1 AAAAATTTA
6888092 AAAAATTTTA
1 AAAAA-TTTA
*
6888102 AAAAATTAA
1 AAAAATTTA
6888111 AAAAATTCTCA
1 AAAAATT-T-A
**
6888122 AAAGTTTTTA
1 AAA-AATTTA
**
6888132 AAATTTTTTTA
1 AAA--AATTTA
*
6888143 AAAAGTTTA
1 AAAAATTTA
6888152 TAAAAATTCTA
1 -AAAAATT-TA
6888163 AAAAATTTTA
1 AAAAA-TTTA
**
6888173 AAATCTTTAA
1 AAAAATTT-A
*
6888183 CAAAAATCTA
1 -AAAAATTTA
*
6888193 AAAAACTTA
1 AAAAATTTA
*
6888202 TAAAAATTCA
1 -AAAAATTTA
6888212 AAATAATTT-
1 AAA-AATTTA
*
6888221 AAAAATTTT
1 AAAAATTTA
*
6888230 AAAAATTCTG
1 AAAAATT-TA
6888240 AAAAATTT
1 AAAAATTT
6888248 TAAGAATATT
Statistics
Matches: 123, Mismatches: 19, Indels: 28
0.72 0.11 0.16
Matches are distributed among these distances:
8 5 0.04
9 43 0.35
10 50 0.41
11 23 0.19
12 2 0.02
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (9 bp):
AAAAATTTA
Found at i:6888404 original size:17 final size:18
Alignment explanation
Indices: 6888384--6888422 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
6888374 AAAATTATAA
*
6888384 AAAATTTA-AAATAAATT
1 AAAATTTATAAAAAAATT
6888401 AAAATTTATAAAAAAATT
1 AAAATTTATAAAAAAATT
6888419 AAAA
1 AAAA
6888423 ATATGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATTTATAAAAAAATT
Found at i:6888404 original size:18 final size:19
Alignment explanation
Indices: 6888383--6888424 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
6888373 AAAAATTATA
*
6888383 AAAAATTTA-AAATAAATT
1 AAAAATTTATAAAAAAATT
6888401 -AAAATTTATAAAAAAATT
1 AAAAATTTATAAAAAAATT
6888419 AAAAAT
1 AAAAAT
6888425 ATGAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 8 0.38
18 8 0.38
19 5 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATTTATAAAAAAATT
Found at i:6888435 original size:28 final size:28
Alignment explanation
Indices: 6888371--6888435 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
6888361 TAAAATTTTT
* *
6888371 TGAAAAATTATAAAAAATTTAAAATAAA
1 TGAAAATTTATAAAAAAATTAAAATAAA
* *
6888399 TTAAAATTTATAAAAAAATTAAAA-ATA
1 TGAAAATTTATAAAAAAATTAAAATAAA
6888426 TGAAATATTT
1 TGAAA-ATTT
6888436 TTATAAATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
TGAAAATTTATAAAAAAATTAAAATAAA
Found at i:6888653 original size:21 final size:21
Alignment explanation
Indices: 6888629--6888671 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6888619 AACATTCTTT
*
6888629 AAAAGTAAAAAATTTAAAAAA
1 AAAACTAAAAAATTTAAAAAA
* *
6888650 AAAACTTAAAATTTTAAAAAA
1 AAAACTAAAAAATTTAAAAAA
6888671 A
1 A
6888672 TATGTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAACTAAAAAATTTAAAAAA
Found at i:6888747 original size:20 final size:18
Alignment explanation
Indices: 6888711--6888765 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
6888701 AAATATGGAA
*
6888711 AAAAATTTTAGAATTTTTT
1 AAAAATTTTA-TATTTTTT
6888730 AAAAATTATTATATTTTTT
1 AAAAATT-TTATATTTTTT
* *
6888749 CAAAATTTTTTATTTTT
1 AAAAATTTTATATTTTT
6888766 GATTTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.28
19 20 0.62
20 3 0.09
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
AAAAATTTTATATTTTTT
Found at i:6888974 original size:9 final size:9
Alignment explanation
Indices: 6888960--6889198 Score: 117
Period size: 9 Copynumber: 25.0 Consensus size: 9
6888950 TATATGTCTA
6888960 AAATTTTTT
1 AAATTTTTT
*
6888969 AAATTTTTC
1 AAATTTTTT
6888978 AGAA-TTTTT
1 A-AATTTTTT
*
6888987 AAAATTTTT
1 AAATTTTTT
* *
6888996 AAAATGTTT
1 AAATTTTTT
*
6889005 AAATTTTTAA
1 AAATTTTT-T
*
6889015 AAATTTTTAA
1 AAATTTTT-T
6889025 AAACTTTTTT
1 AAA-TTTTTT
*
6889035 GAATTTTTT
1 AAATTTTTT
6889044 AAATTTTTCT
1 AAATTTTT-T
*
6889054 ATATTTTTT
1 AAATTTTTT
* *
6889063 AAGTTTTTA
1 AAATTTTTT
6889072 AAATTTTTT
1 AAATTTTTT
* *
6889081 GAATTTTCTA
1 AAATTTT-TT
6889091 AAAGTTTTTT
1 AAA-TTTTTT
6889101 GAAATCATTTTT
1 -AAAT--TTTTT
* **
6889113 GAATTTTGA
1 AAATTTTTT
*
6889122 AAATTTGTT
1 AAATTTTTT
*
6889131 AGAATTTTTAAA
1 A-AATTTTT--T
6889143 AAATTTTTTT
1 AAA-TTTTTT
*
6889153 ATATTTTTT
1 AAATTTTTT
6889162 GGAAA-TTTTT
1 --AAATTTTTT
6889172 --ATTTCTTT
1 AAATTT-TTT
*
6889180 AAAAATTTTT
1 -AAATTTTTT
6889190 AAATTTTTT
1 AAATTTTTT
6889199 TAAGAATTGT
Statistics
Matches: 176, Mismatches: 33, Indels: 42
0.70 0.13 0.17
Matches are distributed among these distances:
6 1 0.01
7 2 0.01
8 5 0.03
9 89 0.51
10 46 0.26
11 22 0.12
12 11 0.06
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (9 bp):
AAATTTTTT
Found at i:6888976 original size:10 final size:10
Alignment explanation
Indices: 6888958--6889354 Score: 67
Period size: 10 Copynumber: 40.1 Consensus size: 10
6888948 TGTATATGTC
*
6888958 TAAAATTTTT
1 TAAATTTTTT
6888968 TAAA-TTTTT
1 TAAATTTTTT
*
6888977 CAGAA-T-TTT
1 TA-AATTTTTT
*
6888986 TAAA-ATTTT
1 TAAATTTTTT
* *
6888995 TAAAATGT-T
1 TAAATTTTTT
*
6889004 TAAATTTTTA
1 TAAATTTTTT
* *
6889014 AAAATTTTTA
1 TAAATTTTTT
* *
6889024 AAAACTTTTT
1 TAAATTTTTT
*
6889034 TGAA-TTTTT
1 TAAATTTTTT
*
6889043 TAAATTTTTC
1 TAAATTTTTT
*
6889053 TATA-TTTTT
1 TAAATTTTTT
*
6889062 T-AA-GTTTT
1 TAAATTTTTT
*
6889070 TAAAATTTTT
1 TAAATTTTTT
* *
6889080 TGAATTTTCT
1 TAAATTTTTT
*
6889090 AAAAGTTTTTT
1 TAAA-TTTTTT
* *
6889101 GAAATCATTTT
1 TAAAT-TTTTT
*
6889112 TGAA--TTTT
1 TAAATTTTTT
* * *
6889120 GAAAATTTGT
1 TAAATTTTTT
*
6889130 TAGAATTTTTAA
1 TA-AATTTTT-T
*
6889142 AAAATTTTTT
1 TAAATTTTTT
*
6889152 TATATTTTTT
1 TAAATTTTTT
*
6889162 GGAAA--TTTT
1 -TAAATTTTTT
*
6889171 T--ATTTCTT
1 TAAATTTTTT
**
6889179 TAAAAATTTT
1 TAAATTTTTT
6889189 TAAATTTTTT
1 TAAATTTTTT
* * *
6889199 TAAGAATTGTC
1 TAA-ATTTTTT
*
6889210 TAGATTTTTTGTT
1 TA-A-ATTTT-TT
*
6889223 TGAATTTTTT
1 TAAATTTTTT
6889233 TAAATTTTTT
1 TAAATTTTTT
* *
6889243 GAATTTTTTT
1 TAAATTTTTT
***
6889253 TAAA-AAATT
1 TAAATTTTTT
*
6889262 AAAATTTATTT
1 TAAATTT-TTT
**
6889273 TAGAA-TTTGA
1 TA-AATTTTTT
* *
6889283 AAAATTTTTA
1 TAAATTTTTT
* *
6889293 GAATTTTTTTT
1 TAA-ATTTTTT
6889304 TAGAA--TTTT
1 TA-AATTTTTT
*
6889313 TAAAGTTTTT
1 TAAATTTTTT
*
6889323 TAGATTTTTT
1 TAAATTTTTT
*
6889333 AAAATTTTTT
1 TAAATTTTTT
6889343 CTAAATTTTTT
1 -TAAATTTTTT
6889354 T
1 T
6889355 TTTTAAAATA
Statistics
Matches: 270, Mismatches: 87, Indels: 60
0.65 0.21 0.14
Matches are distributed among these distances:
6 1 0.00
8 20 0.07
9 56 0.21
10 125 0.46
11 58 0.21
12 8 0.03
13 2 0.01
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (10 bp):
TAAATTTTTT
Found at i:6888985 original size:18 final size:17
Alignment explanation
Indices: 6888908--6889099 Score: 96
Period size: 19 Copynumber: 10.3 Consensus size: 17
6888898 TATTTAATTC
* *
6888908 TTTTTTAATTTTACAAAA
1 TTTTTAAATTTT-TAAAA
* *
6888926 TTTTCTAGATTTTAAAGAA
1 TTTT-TAAATTTTTAA-AA
* * *
6888945 TTTTGTATATGTCTAAAA
1 TTTT-TAAATTTTTAAAA
*
6888963 TTTTTTAAATTTTTCAGAA
1 -TTTTTAAATTTTT-AAAA
6888982 TTTTTAAAATTTTTAAAA
1 TTTTT-AAATTTTTAAAA
*
6889000 TGTTTAAATTTTTAAAAA
1 TTTTTAAATTTTT-AAAA
* *
6889018 TTTTTAAAAACTTTTTTGAAT
1 TTTTT--AAA--TTTTTAAAA
* *
6889039 TTTTTAAATTTTTCTATAT
1 TTTTTAAA-TTTT-TAAAA
*
6889058 TTTTTAAGTTTTTAAAA
1 TTTTTAAATTTTTAAAA
*
6889075 TTTTTTGAATTTTCTAAAA
1 -TTTTTAAATTTT-TAAAA
6889094 GTTTTT
1 -TTTTT
6889100 TGAAATCATT
Statistics
Matches: 136, Mismatches: 25, Indels: 25
0.73 0.13 0.13
Matches are distributed among these distances:
17 11 0.08
18 53 0.39
19 57 0.42
20 3 0.02
21 7 0.05
22 5 0.04
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTTTAAATTTTTAAAA
Found at i:6889169 original size:51 final size:49
Alignment explanation
Indices: 6889019--6889170 Score: 125
Period size: 51 Copynumber: 3.1 Consensus size: 49
6889009 TTTTAAAAAT
* * * * *
6889019 TTTTAAAAACTTTTTTGAATTTT-T-TAAATTTTTCTATATTTTTT-AAG
1 TTTTGAAAA-TTTTTAGAATTTTCTAAAAATTTTTTTATATTTTTTGAAA
* * * * *
6889066 TTTTTAAAATTTTTTGAATTTTCTAAAAGTTTTTTGAAATCATTTTTG-AA
1 TTTTGAAAATTTTTAGAATTTTCTAAAAATTTTTTTATAT--TTTTTGAAA
6889116 TTTTGAAAATTTGTTAGAATTTT-TAAAAAATTTTTTTATATTTTTTGGAAA
1 TTTTGAAAATTT-TTAGAATTTTCT-AAAAATTTTTTTATATTTTTT-GAAA
6889167 TTTT
1 TTTT
6889171 TATTTCTTTA
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
46 13 0.15
47 9 0.11
48 10 0.12
49 5 0.06
50 19 0.23
51 28 0.33
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.59
Consensus pattern (49 bp):
TTTTGAAAATTTTTAGAATTTTCTAAAAATTTTTTTATATTTTTTGAAA
Found at i:6889200 original size:20 final size:20
Alignment explanation
Indices: 6889116--6889206 Score: 62
Period size: 21 Copynumber: 4.5 Consensus size: 20
6889106 CATTTTTGAA
*
6889116 TTTTGAAAATTTGTTAGAA-TT
1 TTTTAAAAATTT-TTA-AATTT
* **
6889137 TTTAAAAAATTTTTTTATATT
1 TTTTAAAAATTTTTAAAT-TT
**
6889158 TTTTGGAAATTTTT--ATTT
1 TTTTAAAAATTTTTAAATTT
*
6889176 CTTTAAAAATTTTTAAATTT
1 TTTTAAAAATTTTTAAATTT
*
6889196 TTTTAAGAATT
1 TTTTAAAAATT
6889207 GTCTAGATTT
Statistics
Matches: 54, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
18 13 0.24
19 3 0.06
20 15 0.28
21 23 0.43
ACGTcount: A:0.34, C:0.01, G:0.07, T:0.58
Consensus pattern (20 bp):
TTTTAAAAATTTTTAAATTT
Found at i:6889312 original size:12 final size:13
Alignment explanation
Indices: 6889287--6889313 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6889277 ATTTGAAAAA
6889287 TTTTTAGAATTTT
1 TTTTTAGAATTTT
6889300 TTTTTAGAATTTT
1 TTTTTAGAATTTT
6889313 T
1 T
6889314 AAAGTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTTAGAATTTT
Found at i:6889322 original size:31 final size:31
Alignment explanation
Indices: 6889270--6889332 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
6889260 TTAAAATTTA
6889270 TTTTAGAATTTGAAAAA-TTTTTAGAATTTTT
1 TTTTAGAATTTGAAAAATTTTTTAG-ATTTTT
** *
6889301 TTTTAGAATTTTTAAAGTTTTTTAGATTTTT
1 TTTTAGAATTTGAAAAATTTTTTAGATTTTT
6889332 T
1 T
6889333 AAAATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (31 bp):
TTTTAGAATTTGAAAAATTTTTTAGATTTTT
Found at i:6889323 original size:19 final size:19
Alignment explanation
Indices: 6889299--6889342 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
6889289 TTTAGAATTT
*
6889299 TTTTTTAGAATTTTTAAAG
1 TTTTTTAGAATTTTTAAAA
*
6889318 TTTTTTAGATTTTTTAAAA
1 TTTTTTAGAATTTTTAAAA
6889337 TTTTTT
1 TTTTTT
6889343 CTAAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (19 bp):
TTTTTTAGAATTTTTAAAA
Found at i:6889337 original size:50 final size:50
Alignment explanation
Indices: 6889226--6889341 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 50
6889216 TTTTGTTTGA
* * *
6889226 ATTTTTTTAAATTTTTTGAATTTTTTTTAAAAAATTAAAATTTATTTTAG
1 ATTTTTTAAAATTTTTAGAATTTTTTTTAAAAAATTAAAAGTTATTTTAG
* ** * ** *
6889276 AATTTGAAAAATTTTTAGAATTTTTTTTTAGAATTTTTAAAGTT-TTTTAG
1 ATTTTTTAAAATTTTTAGAA-TTTTTTTTAAAAAATTAAAAGTTATTTTAG
6889326 ATTTTTTAAAATTTTT
1 ATTTTTTAAAATTTTT
6889342 TCTAAATTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 34 0.65
51 18 0.35
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (50 bp):
ATTTTTTAAAATTTTTAGAATTTTTTTTAAAAAATTAAAAGTTATTTTAG
Found at i:6891177 original size:22 final size:22
Alignment explanation
Indices: 6891120--6891177 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
6891110 TTTATTTATT
** *
6891120 TTTAAAATT-ATTTGTATTTGA
1 TTTAAAATTAATTTAAATTTAA
*
6891141 TATTAAAA-TATTTTAAATTTAA
1 T-TTAAAATTAATTTAAATTTAA
6891163 TTTAAAATTAATTTA
1 TTTAAAATTAATTTA
6891178 TTTAAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 8 0.28
22 21 0.72
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (22 bp):
TTTAAAATTAATTTAAATTTAA
Found at i:6892042 original size:21 final size:22
Alignment explanation
Indices: 6892008--6892051 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
6891998 AGATATTAGT
*
6892008 TATTATAACGATAAAATT-AAA
1 TATTATAACAATAAAATTGAAA
* *
6892029 TATTATAATAATAAGATTGAAA
1 TATTATAACAATAAAATTGAAA
6892051 T
1 T
6892052 CCATAGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (22 bp):
TATTATAACAATAAAATTGAAA
Found at i:6892336 original size:11 final size:11
Alignment explanation
Indices: 6892320--6892344 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6892310 TTTATCACTT
6892320 AAATAATAAAA
1 AAATAATAAAA
6892331 AAATAATAAAA
1 AAATAATAAAA
6892342 AAA
1 AAA
6892345 AAAAAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAATAAAA
Found at i:6892597 original size:28 final size:30
Alignment explanation
Indices: 6892563--6892623 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
6892553 ATATAATGTC
6892563 AAATATTTTT-AAAAA-TATAAAATAATAA
1 AAATATTTTTAAAAAATTATAAAATAATAA
*
6892591 AAATATTTTTAAAAAATTATAAAATATTAA
1 AAATATTTTTAAAAAATTATAAAATAATAA
6892621 AAA
1 AAA
6892624 AATCATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 10 0.33
29 5 0.17
30 15 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (30 bp):
AAATATTTTTAAAAAATTATAAAATAATAA
Found at i:6896049 original size:14 final size:15
Alignment explanation
Indices: 6896030--6896070 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
6896020 ACGATTTTCT
6896030 AAAATTAAAGATT-A
1 AAAATTAAAGATTAA
*
6896044 AAAATTAGA-ATTAA
1 AAAATTAAAGATTAA
6896058 AAAATTAAAGATT
1 AAAATTAAAGATT
6896071 GGAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 3 0.13
14 17 0.74
15 3 0.13
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (15 bp):
AAAATTAAAGATTAA
Found at i:6897278 original size:3 final size:3
Alignment explanation
Indices: 6897272--6897328 Score: 78
Period size: 3 Copynumber: 19.0 Consensus size: 3
6897262 CTACTACTAC
* * * *
6897272 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TTA CAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6897320 TAA TAA TAA
1 TAA TAA TAA
6897329 AAGGGAAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:6899312 original size:134 final size:134
Alignment explanation
Indices: 6899072--6899334 Score: 526
Period size: 134 Copynumber: 2.0 Consensus size: 134
6899062 AAACATGATT
6899072 CTCATCAAACTTTAATGGTGCATGTGTTGCATTTTAGTGAGGTATGCCTCATACATTCACAAATT
1 CTCATCAAACTTTAATGGTGCATGTGTTGCATTTTAGTGAGGTATGCCTCATACATTCACAAATT
6899137 CATCATGGAAACATCATGCCATTTAGGTATTCTCATAACATCCCATCATTCAATGAATAAAAAAA
66 CATCATGGAAACATCATGCCATTTAGGTATTCTCATAACATCCCATCATTCAATGAATAAAAAAA
6899202 CATG
131 CATG
6899206 CTCATCAAACTTTAATGGTGCATGTGTTGCATTTTAGTGAGGTATGCCTCATACATTCACAAATT
1 CTCATCAAACTTTAATGGTGCATGTGTTGCATTTTAGTGAGGTATGCCTCATACATTCACAAATT
6899271 CATCATGGAAACATCATGCCATTTAGGTATTCTCATAACATCCCATCATTCAATGAATAAAAAA
66 CATCATGGAAACATCATGCCATTTAGGTATTCTCATAACATCCCATCATTCAATGAATAAAAAA
6899335 CGTTCCTTAT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 129 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.32
Consensus pattern (134 bp):
CTCATCAAACTTTAATGGTGCATGTGTTGCATTTTAGTGAGGTATGCCTCATACATTCACAAATT
CATCATGGAAACATCATGCCATTTAGGTATTCTCATAACATCCCATCATTCAATGAATAAAAAAA
CATG
Found at i:6901514 original size:76 final size:76
Alignment explanation
Indices: 6901434--6901577 Score: 191
Period size: 76 Copynumber: 1.9 Consensus size: 76
6901424 CCACATCACA
** *
6901434 AAAAAAGAAACATTCGTATTTGTACCACCTACATAAGAAAGACATC-AGATCTATATGCTATAAA
1 AAAAAAGAAACATTCACATTTGCACCACCTACATAAGAAAGACATCGA-ATCTATATGCTATAAA
6901498 AAAATTAAAAAT
65 AAAATTAAAAAT
* * * * * *
6901510 AAAAAAGAGACATTCACATTTGCATCACTTGCATGAGAAAGACATCGAATCTATATGCTGTAAAA
1 AAAAAAGAAACATTCACATTTGCACCACCTACATAAGAAAGACATCGAATCTATATGCTATAAAA
6901575 AAA
66 AAA
6901578 ATAATAACAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
76 57 0.98
77 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (76 bp):
AAAAAAGAAACATTCACATTTGCACCACCTACATAAGAAAGACATCGAATCTATATGCTATAAAA
AAATTAAAAAT
Found at i:6902516 original size:50 final size:50
Alignment explanation
Indices: 6902453--6902637 Score: 153
Period size: 50 Copynumber: 3.6 Consensus size: 50
6902443 CTAGACAAAA
* *
6902453 CATTTTCACACAAGATTTTAAAAGTTTCACA-ACCTCTATTTGAAAGGAGC
1 CATTTTCAAACAAGATTTTTAAAGTTTCA-ATACCTCTATTTGAAAGGAGC
* * * * *
6902503 CATTTTCAAACAAGATTTTTTTTTAAAGTTTCAATGCTTCTATTTGGAATGAGT
1 CATTTTCAAACAAGA----TTTTTAAAGTTTCAATACCTCTATTTGAAAGGAGC
* * *
6902557 CATTTTCAAACAAGAATTTTTAAAGTTTCAA-AGC-CTATGTTTAGGAGG-GC
1 CATTTTCAAACAAG-ATTTTTAAAGTTTCAATACCTCTAT-TTGA-AAGGAGC
* *
6902607 CATTTACAAATAAGATTTTTTAAAGTTTCAA
1 CATTTTCAAACAAGA-TTTTTAAAGTTTCAA
6902638 AGCTTTTGTA
Statistics
Matches: 109, Mismatches: 17, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
49 5 0.05
50 44 0.40
51 17 0.16
53 1 0.01
54 41 0.38
55 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (50 bp):
CATTTTCAAACAAGATTTTTAAAGTTTCAATACCTCTATTTGAAAGGAGC
Found at i:6902609 original size:104 final size:101
Alignment explanation
Indices: 6902453--6902642 Score: 233
Period size: 104 Copynumber: 1.9 Consensus size: 101
6902443 CTAGACAAAA
* * *
6902453 CATTTTCACACAAGATTTTAAAAGTTTCACAACCTCTATTTGAAAGGAGCCATTTTCAAACAAGA
1 CATTTTCAAACAAGATTTTAAAAGTTTCACAACCTATATTTGAAAGGAGCCATTTACAAACAAGA
*
6902518 TTTTTTTTTAAAGTTTCAATGCTTCTATTTGGAATGAGT
66 ---TTTTTTAAAGTTTCAAAGCTTCTATTTGGAATGAGT
* * * *
6902557 CATTTTCAAACAAGAATTTTTAAAGTTTCA-AAGCCTATGTTT-AGGAGG-GCCATTTACAAATA
1 CATTTTCAAACAAG-ATTTTAAAAGTTTCACAA-CCTATATTTGA-AAGGAGCCATTTACAAACA
6902619 AGATTTTTTAAAGTTTCAAAGCTT
63 AGATTTTTTAAAGTTTCAAAGCTT
6902643 TTGTATAGGG
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
101 20 0.27
104 31 0.41
105 24 0.32
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (101 bp):
CATTTTCAAACAAGATTTTAAAAGTTTCACAACCTATATTTGAAAGGAGCCATTTACAAACAAGA
TTTTTTAAAGTTTCAAAGCTTCTATTTGGAATGAGT
Found at i:6904163 original size:13 final size:13
Alignment explanation
Indices: 6904145--6904169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6904135 AATATGGCAG
6904145 TTTGTAGAAAAAT
1 TTTGTAGAAAAAT
6904158 TTTGTAGAAAAA
1 TTTGTAGAAAAA
6904170 GGTTTAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (13 bp):
TTTGTAGAAAAAT
Found at i:6905279 original size:14 final size:14
Alignment explanation
Indices: 6905260--6905300 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
6905250 ACTATTTTCT
6905260 AAAAATTAAAGATA
1 AAAAATTAAAGATA
* **
6905274 AAAAATTAGACTTA
1 AAAAATTAAAGATA
6905288 AAAAATTAAAGAT
1 AAAAATTAAAGAT
6905301 TGGAATTAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (14 bp):
AAAAATTAAAGATA
Found at i:6906908 original size:11 final size:12
Alignment explanation
Indices: 6906886--6906911 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6906876 CTTCATATAT
6906886 AAAAACTAAAAA
1 AAAAACTAAAAA
6906898 AAAAACTAAAAA
1 AAAAACTAAAAA
6906910 AA
1 AA
6906912 TGTTACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAAACTAAAAA
Found at i:6916602 original size:2 final size:2
Alignment explanation
Indices: 6916597--6916624 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6916587 AATATATGTT
6916597 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6916625 CACACTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6916928 original size:9 final size:10
Alignment explanation
Indices: 6916909--6916961 Score: 62
Period size: 9 Copynumber: 5.8 Consensus size: 10
6916899 GATAATTTAA
6916909 AATATAATAT
1 AATATAATAT
6916919 AATA-AATAT
1 AATATAATAT
6916928 AA-ATAATAT
1 AATATAATAT
6916937 AA-ATAA-AT
1 AATATAATAT
*
6916945 AATATAAAAT
1 AATATAATAT
6916955 AA-ATAAT
1 AATATAAT
6916962 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
8 5 0.13
9 26 0.67
10 8 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATATAATAT
Found at i:6916935 original size:13 final size:14
Alignment explanation
Indices: 6916909--6916961 Score: 74
Period size: 13 Copynumber: 3.9 Consensus size: 14
6916899 GATAATTTAA
6916909 AATATAATATAATA-
1 AATATAA-ATAATAT
6916923 AATATAAATAATAT
1 AATATAAATAATAT
6916937 AA-ATAAATAATAT
1 AATATAAATAATAT
*
6916950 AAAATAAATAAT
1 AATATAAATAAT
6916962 TTTAAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
13 19 0.51
14 18 0.49
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATATAAATAATAT
Found at i:6916951 original size:18 final size:18
Alignment explanation
Indices: 6916909--6916960 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
6916899 GATAATTTAA
6916909 AATATAATAT-AATAAAT
1 AATATAATATAAATAAAT
*
6916926 ATAAATAATATAAATAAAT
1 A-ATATAATATAAATAAAT
*
6916945 AATATAAAATAAATAA
1 AATATAATATAAATAA
6916961 TTTTAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 1 0.03
18 21 0.70
19 8 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAATATAAATAAAT
Found at i:6916969 original size:15 final size:14
Alignment explanation
Indices: 6916900--6916961 Score: 74
Period size: 14 Copynumber: 4.4 Consensus size: 14
6916890 GATAGATTTG
*
6916900 ATAATTTAAAATATA
1 ATAATATAAAATA-A
6916915 AT-ATAATAAATATAA
1 ATAAT-ATAAA-ATAA
6916930 ATAATAT-AAATAA
1 ATAATATAAAATAA
6916943 ATAATATAAAATAA
1 ATAATATAAAATAA
6916957 ATAAT
1 ATAAT
6916962 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
13 11 0.26
14 15 0.36
15 11 0.26
16 5 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATATAAAATAA
Found at i:6923471 original size:634 final size:626
Alignment explanation
Indices: 6919703--6926441 Score: 5792
Period size: 634 Copynumber: 10.7 Consensus size: 626
6919693 AAAATTGTAT
* ** * * *
6919703 AAAGCAAAGCAACAG-CTTAACACATACT-TTGGACATTTCACATTTAGCTGTTCATTACTTTAT
1 AAAGCAAAGCAACAGTC-TAGCACATA-TATAAGACATTTCACATTTGGCTGGTCATTACTTTAC
* * * * * ** * * * *
6919766 AA-AAAAAAATTTGTAAAGTTAAATTATTTTTTTCATAATTCCATATATGTTAAAA-TTTTATAC
64 AAGGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATAC
* * * * * **
6919829 ATGGAGAATATGAAATATAATTTAATTGATATATAAAATTATTTTTTAAAA-AAATTATTTAACA
129 --GGAGAAT-TCAAATTTAATTTAATTGATTTATACAATTA-TTTTTAAAATAAA-CATCCAACA
* * ** * *
6919893 TATTTAAAATTTAAATCTTAATGTTTG-CATTTTTTTTTCAAATTGCAACATCCTTTCTAAAAAA
189 TACTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGT----AA
* *
6919957 AAAAAAGTTATATAGGATGCATGAAGG-GTTTGAGTTGTAAAACTTTAGTCTAATTTTAAGCTCT
250 AAAAAAGTTATATAGGATGCATGAAGGAG-TTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCT
* ** * * * * * * *
6920021 ATTTGTCTCACTAAAAATGATTTT-TGAAAATAATTTTTATATTTTTAGGTGTTTGTTTGGTAAA
314 ATTTGT-TTAAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTTAGGTGTTTGTTTGG-CAA
* * * * *
6920085 AAACT-TGTTAGTCAACAAAAAATAATTTACTGATCAACAAAAAATAAAGTTACC-TTTTTT-GA
377 AAACTGAGTT-GTCAATAGAAAATGACTTA-TG-TCAACAAAAAATAAAG---CCATTTTTTAGA
* ** * ** *
6920147 AATTGTCTTACTC-TTTCGAAAATGAAAATTTTCTCATATTATGATTTTTATCAATTGTATTATC
436 AATTGTCTTACGCTTTTTAAAAAGGAAAA-TTTCTCAGGTTGTGATTTTTATCAATTGTATTATC
* *
6920211 AATCATTTTAAATAAATAATTTTATAAATCTCTTGAGAGCTTTGACTTTTTATGAGGT-TTTTTT
500 AATCATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTTT
* * * * * *
6920275 TTTTAATCTATCAAATGTTTAAATCAATTCTCTAAATTTTCCCATATTCATCCATCTCAAAC
565 TTTAAATCTATCAAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
* ** * * * * * * *
6920337 AAAGCAAAGCAATAACCTAGCATATACATAGGACATTTCATATTTGGCTTGT-ATTACTTCATAA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
*** *
6920401 GGAAAAAATGTATAAAGCTTTCTTTTTTATTTTTGGTAATTCCTTATATGGTAAAACGT-TATAC
66 GGAAAAAATGTATAAAGCTAAATTTTTT-TTTTT-GTAATTCCTTATATGGTAAAACATATATAC
* * **
6920465 GTGGAGAATTCAAATTTTAATTTTATTGATATATACAATTATTTTTTTAAAAAATAAACATCCTG
129 --GGAGAATTCAAA-TTTAATTTAATTGATTTATACAATTA--TTTTT--AAAATAAACATCCAA
* * *
6920530 CATATTTAAAATTTAAATAATAACATTTGTAA-TTTTTTTTCAAATTACAACATCCTTTGTTAAG
187 CATACTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTG-T---
* ** * * * *
6920594 AAAAAAAGAAAGTTATATAAGATGCATGAAAAAGTTGAGTTGTAAAATTCTAATCTAAATTAAGG
248 --AAAAA-AAAGTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAG
* ** * ** * * * * * * *
6920659 CTCCATTTTGTTTCACTAAAAATAACTTCCGGAAAATGATTTTTGC-TTTTTTGGTATTTATTTT
310 CTCTA-TTTGTTT-AAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTTAGGTGTTTGTTTG
*
6920723 GCAAAAAACTTA-TTGGTCAAT-G-AAA--A---A--T------AAAAT-----CATTTTTTGAG
373 GC-AAAAACTGAGTT-GTCAATAGAAAATGACTTATGTCAACAAAAAATAAAGCCATTTTTT-AG
** * ** *
6920767 AAATTGTCTTACATTTTTTAAAAAGAGAAATTTTC-CAGGTTGTGATTTTTATCGCTGGTATTAT
435 AAATTGTCTTACGCTTTTTAAAAAG-GAAAATTTCTCAGGTTGTGATTTTTATCAATTGTATTAT
* * * * * *
6920831 CAATCATTTTAAATAAATAATTTTTTAAATATCTTAAGGGCTTTTACTTTTTATGAGGAATTTTT
499 CAATCATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTT
*** * * * *
6920896 TAAAAAATTTATCAAATG-AGTAATTCAATTTTCTAAATTTTTTCATATCCATCCACCTTAAAAA
564 TTTTAAATCTATCAAATGTA-TAATTCAATTCTCTAAATTTTCTCATATCCATCCACC-T--CAA
*
6920960 AA
625 AC
*
6920962 AAAGCAAAGCAACAGCCTAGCACATATAT-AGAGCATTTCACATTTGGCTGGTCATTACTTTACA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGA-CATTTCACATTTGGCTGGTCATTACTTTACA
* * * * * *
6921026 AGG-AAAAATGTATAAACCTAAA-TTTTTTTTTTATAGTTCTTTATATGGTAAAACATTATAAAT
65 AGGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACA-TATATAC
** ** * * * *
6921089 AAAGAATAGAAAATTTAATTTAATTGATTTATATAGTTATTTTAAAAAAATAAATATCCAACATA
129 GGAGAAT-TCAAATTTAATTTAATTGATTTATACAATTATTTT--TAAAATAAACATCCAACATA
*
6921154 CTTAAAATTTAAATTTTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGT-AAAAAAA
191 CTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAA
* * *
6921218 GTTTATATAGGATGCACGAAGG-GTATGAGTTGCAAAACTCTAGTCTAATTT-AAGATTCTATTT
256 G-TTATATAGGATGCATGAAGGAGT-TGAGTTGTAAAACTCTAGTCTAATTTAAAG-CTCTATTT
* * * * * * ** *
6921281 GTTTCA-AAAAA-AA-GTTCGAAAAATGATTTCTACATTTTTAGGTATTTGTTTGATAAAAAATT
318 GTTTAAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTTAGGTGTTTGTTTG-GCAAAAACT
* * * * *
6921343 G-GTTGGTCAA-CGAAAAATGAC-T-TGTCAA-AGGAAAAT-AAGATCACTTTTCTACAAATTGT
382 GAGTT-GTCAATAG-AAAATGACTTATGTCAACA-AAAAATAAAG-CCA-TTTTTTAGAAATTGT
* * ** * *
6921402 CTTACACTTTTGAAATTGAGAAATTTTC-CAGGTTGTAATTTTTATCAATTGTATTATCAATCAT
442 CTTACGCTTTTTAAAAAG-GAAAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAATCAT
* * * * *
6921466 TGTAAATAAATAATTTTATGAATATCTTGAAAGCTTTAAAC-TTTTACGAGGTATTTTTTTTAAA
506 TTTAAATAAATAATTTTATAAATATCTTGAGAGCTTT-GACTTTTTACGAGGTATTTTTTTTTAA
* * * *
6921530 ATCTATCAAATGTATAATTCAATTCTCAAAATTTTTTCACATCCATCCATCTCAAAC
570 ATCTATCAAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
* * * *
6921587 AAAGTAAAGCAAAAGTCTAGCACATATATAAGACATTTCACATTTGGCTAGTTATTACTTTACAA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
* * * * * * **
6921652 GGAAAAAATATATAAACCTAATTTTTCTTTTTTTGTAATTTCTTATATGGTAAAACGTATACATT
66 GGAAAAAATGTATAAAGCTAAATTTT-TTTTTTTGTAATTCCTTATATGGTAAAACATATATACG
** * *
6921717 GAGAATTCAAATTTTAATTTAATTGATTTATACAATTACTTTAAAAAAGTGAACATCTAACATAC
130 GAGAATTCAAA-TTTAATTTAATTGATTTATACAATTA-TTTTTAAAA-TAAACATCCAACATAC
*
6921782 TTAAAATTTAAATCTTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAA
192 TTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGT----AAAAA
*
6921847 AAAGTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAA-TTAAAGACTATATT
253 AAAGTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAG-CTCTATT
* * * * *
6921911 TGTTTTTA-AAAAATAACTTTT-GAAAAATGATTTTTAC-ATTTTCAAGTGTTTGTTTTGCAAAA
317 TG-TTTAAGAAAAATAA-TTTTAGGAAAATGATTTCTACAATTTT-AGGTGTTTGTTTGGCAAAA
* * * *
6921973 A---A-----C--T-----A--AC--AGGTCAACGAAAAATAAGGTCATTTTTCTAGAAATTGTC
379 ACTGAGTTGTCAATAGAAAATGACTTATGTCAACAAAAAATAAAGCCATTTTT-TAGAAATTGTC
* * * *
6922019 TTATGC-TTTTGAAAAGGAGAAATTTCTCAGGTTATGATTTTTATCCATTGTATTATCAATCATT
443 TTACGCTTTTTAAAAAGGA-AAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAATCATT
* * * * *
6922083 TTAAATAAATAAGTTTACAAATATCTTGAGATCTTTGACTTTTTACTAGGTTTTTTTTTTTTAAA
507 TTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGG-TATTTTTTTTTAAA
*
6922148 TCTATCAAATGTATAATTCAATTCTCTAACTTTTC-CTATAT-CATCCACCTCAAAC
571 TCTATCAAATGTATAATTCAATTCTCTAAATTTTCTC-ATATCCATCCACCTCAAAC
* * * *
6922203 AAAGTAAAGCAACAG-CTTAGCACATATATAGGACGTTTCACATTTGACTGGTCATTACTTTACA
1 AAAGCAAAGCAACAGTC-TAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACA
* * *
6922267 AGGAAAAAATATATAAAGCTAAATTATTATTTTTTTATAATTCCTTATATGGTAAAAAAGCTATA
65 AGGAAAAAATGTATAAAGCTAAATT-TT-TTTTTTTGTAATTCCTTATATGGTAAAACA--TATA
* * *
6922332 CATGGAGAATTCAAAATTTAATTTAATTGATTTATACAATTATTTTAAAAAAATAAACATCCAAC
126 TACGGAGAATTC-AAATTTAATTTAATTGATTTATACAATTATTTT--TAAAATAAACATCCAAC
* * * *
6922397 ATATTTAAAATTTAAATATTAAAATTTGT-ATTTTTTTTTCCAAATTGTAACATCCTTTTTAAAA
188 ATACTTAAAATTTAAATATTAACATTTGTAATTTTTTTTT-CAAATTGCAACATCCTTTGTAAAA
* * * *
6922461 AAAAGTTATATAGGATACATGAAGGAGTTGAGTTTGTAAAACTCTAGTCTAAATTAAGGCTCTGT
252 AAAAGTTATATAGGATGCATGAAGGAGTTGAG-TTGTAAAACTCTAGTCTAATTTAAAGCTCTAT
* * *
6922526 TTGTTTCAAGAAAAATTATTTCTTA--AAAATGATTTCTACATTTTTAGGTGTATT-TTTAGCAA
316 TTGTTT-AAGAAAAA-TAATT-TTAGGAAAATGATTTCTACAATTTTAGGTGT-TTGTTTGGC-A
* **** * *
6922588 AAAACTG-GTTGGTCAATAAAAAATGAC-T-TGTCATTGGAAAATAAAGCCACTTTTCTAAAAAT
376 AAAACTGAGTT-GTCAATAGAAAATGACTTATGTCAACAAAAAATAAAGCCA-TTTTTTAGAAAT
* * * * * *
6922650 TATCTTACTC-TTTTGAAAATGAGAAATTTCCCAAGTTGTGATTTTTATCAATTGTATTATCAAT
439 TGTCTTACGCTTTTTAAAAAGGA-AAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAAT
* *
6922714 CATTTTAAATAAATAATTTTATAAATATCTTTAGAGCTTTGACATTTTACGAGGT-TTTTTTTTT
503 CATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTTTTTT
* * *
6922778 AAATCTATCAAATGTATAATTCAATTCTCTAAATTTTTTCATATCTATCTACCTCAAAC
568 AAATCTATCAAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
*
6922837 AAAGCAAAGCAACAGTCTGGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
* * * * * *
6922902 GGAAAAAATGTGTAAAGCTAAAATATTTTTTTGGTAATTCCTTATATGGCAAAACATATATACGA
66 GGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATACGG
* *
6922967 AGAATTCAAATTTAATTTAATTGATTTATAAAATTATTTTTAAAA-AAGCATCCAACATACTTAA
131 AGAATTCAAATTTAATTTAATTGATTTATACAATTATTTTTAAAATAAACATCCAACATACTTAA
* *
6923031 AATTTAAATATTAACTTTTGTAATTTTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAGGT
196 AATTTAAATATTAACATTTGTAA--TTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAGTT
* *
6923096 ATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTTTAGTCTAATTTAAAGCTCCATTTGTTTAA
259 ATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTATTTGTTTAA
* * ** * *
6923161 CGAAAAATGATTTTAGGAAAATGATTTCTACAATTTTAAGTCCTTATTTGGCAAAAACTGACTTG
324 -GAAAAATAATTTTAGGAAAATGATTTCTACAATTTTAGGTGTTTGTTTGGCAAAAACTGAGTTG
* * *
6923226 TAAATAGAAAATGACTTACTAGTCAACAAAAAATAAAGCCATTTTTTAAAAATTATCTTACGCTT
388 TCAATAGAAAATGACTTA-T-GTCAACAAAAAATAAAGCCATTTTTTAGAAATTGTCTTACGCTT
** * * * *
6923291 TCAAAAAAGGAAAATTGCTTAGGTTGTGATTTTTATCAGTTGTATTATCAATCATTTTAAACAAA
451 TTTAAAAAGGAAAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAATCATTTTAAATAAA
* * * *
6923356 TAATTTTATGAATATCTTGAGAGCTTTGATTTTTCTATGAGTTATATATATTTTTTAAATCTATC
516 TAATTTTATAAATATCTTGAGAGCTTTGACTTTT-TACGAGGTAT-T-T-TTTTTTAAATCTATC
* * * * *
6923421 GAATGTATAATTTAATTCTCTAAATATTCCCATATCCACCCACCTCAAAC
577 AAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
* ** * *
6923471 AAAGCAAAGCAACAGCCTAGCACATATATAAGACA-TTCTACATTTGATTGGTTATTACTTTATA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTC-ACATTTGGCTGGTCATTACTTTACA
* *** *
6923535 AGGAAAAAATGCATAAAAGCTTTTTTTTTTTGTTTTTGTAA-TCCTTATATGGTAAAACGT-TAT
65 AGGAAAAAATGTAT-AAAGC-TAAATTTTTT-TTTTTGTAATTCCTTATATGGTAAAACATATAT
* * * * ** *
6923598 ACATGAAGAATTAAAAATTTAATTTAATTGATTTATGCAGTTATTTAAAAAAGAAACA-CCGAAC
127 AC--GGAGAATT-CAAATTTAATTTAATTGATTTATACAATTATTTTTAAAATAAACATCC-AAC
*
6923662 ATACTTAAAATTTAAATCTTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAA
188 ATACTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAA
* *
6923727 AACA-TTATATAGGATGCATGAAGGAGTTGAGTTATAAAACTCTAGTCTAATTTAAAGCTCCATT
253 AA-AGTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTATT
**
6923791 TGTTTTAAGAAAAATAATTTTCA--AAAATTGATTTCTA-AATTTTCAAATGTTTG-TTGGCAGA
317 TG-TTTAAGAAAAATAATTTT-AGGAAAA-TGATTTCTACAATTTT-AGGTGTTTGTTTGGCA-A
* * * * * *
6923852 AAATTGA-TTGATCAACA-AAACAT-AATT-TGTCAACAGAAAATCAAA-CTGATTTTCTAGAAA
377 AAACTGAGTTG-TCAATAGAAA-ATGACTTATGTCAACAAAAAAT-AAAGC-CATTTTTTAGAAA
* *
6923912 TTGTCTTACG-TTTTTTAAAATGAGAAATTT-TCGAGGTTGTGATTTTTATCAATTGTATTATCA
438 TTGTCTTACGCTTTTTAAAAAGGA-AAATTTCTC-AGGTTGTGATTTTTATCAATTGTATTATCA
* * * * * *
6923975 GTCATTTTAAATAAATAATTTTATAAATATCTTTAGAGTTTTGAATTTTTACAAGG-AATTTTTT
501 ATCATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTTTT
* * * *
6924039 TTAAA-CTATCAAATGTATAATTTAATTCTCTAAAATTTT-TCATATCCAACCACCTTAAAT
566 TTAAATCTATCAAATGTATAATTCAATTCTCT-AAATTTTCTCATATCCATCCACCTCAAAC
* * * * *
6924099 AAAGCAAAGCAATAATCTAGCACATATAT-AGAACATTTCATATTTGGCTAGTCATAACTTTACA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAG-ACATTTCACATTTGGCTGGTCATTACTTTACA
* * * *
6924163 AGGAAAAAATGTATAAAGCTAATTTTTTTTTTTTTTGTAATTCCTTATATGGTGAAACGTATACA
65 AGGAAAAAATGTATAAAGCTAA--ATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATA
* * * * * *
6924228 TGGAGAATTCAAATTTTTATTTAATTAATTTATACAATCATTTTT---TTTAA-ATCCAACATAC
128 CGGAGAATTCAAA-TTTAATTTAATTGATTTATACAATTATTTTTAAAATAAACATCCAACATAC
* * * * ** * * *
6924289 TTAAAATTTAAATCTTAACTTTTTTAA-TTTTTTTT-GAATTATAGCATCTTTTGTAAAAAAAGG
192 TTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAG
* * * * * * *
6924352 TTATATAGGATGCATGAAGGAATTAAGTTGTAAAACT-TCAATTTAATTTGAGGCTCTGTTTGTT
257 TTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCT-AGTCTAATTTAAAGCTCTATTTGTT
* * * * * * *
6924416 TCATGAAAAATTATTTCAGGAAAATGATTTCTA-TATTTTCAAGTATTTGTTTGGTAAAAAACT-
321 T-AAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTT-AGGTGTTTGTTTGG-CAAAAACTG
* * * *
6924479 AGCTAGTCAACAGAAAATAACTTACTGATTAACAAAAAAT-AAGACCATTTTTTTA-AAATTGT-
383 AG-TTGTCAATAGAAAATGACTTA-TG-TCAACAAAAAATAAAG-CCA-TTTTTTAGAAATTGTC
** *
6924541 TGTAC-C-TTTTAAAAAGGAAAATTTC-CTAAATTGTGATTTTTATCAATTGTATTATCAATTAT
443 T-TACGCTTTTTAAAAAGGAAAATTTCTC-AGGTTGTGATTTTTATCAATTGTATTATCAATCAT
* * * * **
6924603 TTTAAATAAATAATTATGTCAGTATCTTGAGAGCTTTGAC-TTTTACGAGGTATTTTTTTAAAAA
506 TTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTTTTTTAAA
* * * *
6924667 TTTATCAAAGGTATAATTCAATTCTTTAAATTTTCTCATATCCATCCACCTCAAAT
571 TCTATCAAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
* * *
6924723 AAAGCAAAGCAACA-TCCTAGCACATATATAGGACATTTCACATTTGACTAGTCATTACTTTACA
1 AAAGCAAAGCAACAGT-CTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACA
* ** **
6924787 AGGAAAAAATGTATAAAGCTAAATTATTTTTTTTAGGTAATTCCTTGCATGGTAAAATGT-TATA
65 AGGAAAAAATGTATAAAGCTAAATT-TTTTTTTT-TGTAATTCCTTATATGGTAAAACATATATA
* * * *
6924851 CATGGAGAATTAGAAATTTAATTTAATTGATTTATATAATTATTTTTAAAAAATAAAAATCTAAC
128 C--GGAGAATT-CAAATTTAATTTAATTGATTTATACAATTATTTTT--AAAATAAACATCCAAC
** * *
6924916 ATACTTAAAATTTAAATATTAACATTCATATTTTTTTTTTCAAATTGCAACATCCTTTGCAAAAA
188 ATACTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAA
* * *
6924981 ATAG---T-T---AT-C-T--A-G-GTTGAGTTGTAAAACTCTAGTCTAATTTAATGCT-TTTTT
253 AAAGTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTATTT
* * ** * **
6925032 ATTTCAAGGAAAATGGTTTT-GGAAATTGATTTCTAC-ATTTTCAGGTGTTTGTTTTGTTAAAAA
318 GTTT-AAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTT-AGGTGTTTG-TTTGGCAAAAA
* * * * *
6925095 CT-AGTTAGTTAAT-GAAAAATGAC-T-TGTCAAAAAAAAAAAAGAAGACCATTTCTCTGGAAAT
380 CTGAGTT-GTCAATAG-AAAATGACTTATGTC-AACAAAAAATA-AAG-CCATTT-TTTAGAAAT
* * * * *
6925156 TGTCTTATGCTTTTGAAAATGTG-AAATTTCTCAGGTTGTGATTTTTATCAATTGTACTATAAAT
439 TGTCTTACGCTTTTTAAAAAG-GAAAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAAT
* * *
6925220 CATTTTAAATAAATAATTTTATAAATATCTTTAGAGTTTTGACTTTTTACAAGGTATTTTTTTTT
503 CATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTA-TTTTTTTT
* * * *
6925285 TAAATTTATCAAATTTATAATTCAATTCTCTAAATTTTCTCATTTCCATCCATCTCAAAC
567 TAAATCTATCAAATGTATAATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
* * * * *
6925345 AAAACAAAGCAATAATCTAGCATATATATAAGACATTTCACATTTGGCAGGTCATTACTTTACAA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
* ** * * *
6925410 GAAAAAAATGTATAAA-C---A-TTTTTTTTTTGTAATTCCTTATATGACAAAACATATACATGA
66 GGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATACGG
* *
6925470 AGAATTCAAAATTTAATTGT-ATTGATTTATACAATTATTTTT-AAA-AAA-A-CCAATAGACTT
131 AGAATTC-AAATTTAATT-TAATTGATTTATACAATTATTTTTAAAATAAACATCCAACATACTT
* * ** * *
6925530 AAAATTTAAATCTTAACTTTTGTGTTTTTTTTTTTTCAAATTGCAACATCCTTTGTAAACAAAGG
194 AAAATTTAAATATTAAC-ATT-TGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAG
* * * *
6925595 TTATATAGGATGAATGAACATGAAAGAGTTGAGTTGTAAAACTTTAGTCTAATTTAAGGCTCCAT
257 TTATATA-G--G-ATG--CATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTAT
* * * * **
6925660 TTGTTT-CGTAAAAATAATTTCAGGAAAATGATATT-TGCATTTTTAGGTGTTTGTTTGATAGAA
316 TTGTTTAAG-AAAAATAATTTTAGGAAAATGAT-TTCTACAATTTTAGGTGTTTGTTTGGCA-AA
* * * * *
6925723 AA-TTAGTTGGTCAA-CGAAAAATAACTTATTGATCAACGAAAAAA-AAGGTCATTTTTCTAGAA
378 AACTGAGTT-GTCAATAG-AAAATGACTTA-TG-TCAAC-AAAAAATAAAGCCATTTTT-TAGAA
* * * * * *
6925785 ATTATCTTATGC-TTTTAAAACAGGAACATTT-TCCAAG-TGTCAATTTTTATCAATTATATTAT
437 ATTGTCTTACGCTTTTTAAAA-AGGAAAATTTCT-CAGGTTGT-GATTTTTATCAATTGTATTAT
* * * * * * *
6925847 CATTCATTTTAAATAAATAATTTTATCAATATCTTGAAAGTTTTGA-TTTTTACGAGATAATTTA
499 CAATCATTTTAAATAAATAATTTTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTT
* * *
6925911 TTTTAAATCTATCAAACGTATAATTCAATTCTCTAAATTTT-TCCATGTCCATCCACCTTAAAC
564 TTTTAAATCTATCAAATGTATAATTCAATTCTCTAAATTTTCT-CATATCCATCCACCTCAAAC
* * * * *
6925974 AAAGCAAAGCAATAGCCTAGCACATATATAGGACATTTCACATTTAGCTAGTCATTACTTTACAA
1 AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
* * * * * **
6926039 GGAAAAAATGTATAACGGTAAATTATTTTTTTCGTAATTTCTTATATCATAAAACAT-TATACAT
66 GGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATAC--
* * * * *
6926103 GGAGAATTTGAAATTCAATTTAATTGATTTATATAATTATTTTAAAAAAATAAAAATCCAACATA
129 GGAGAA-TTCAAATTTAATTTAATTGATTTATACAATTATTTT--TAAAATAAACATCCAACATA
* *
6926168 CTTAAAATTTAAATATTAACATTTGT-TTTTTTTTTTTAAATTGCAACATCCTTTGT-AAAAAAA
191 CTTAAAATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAA
* * * * ** *
6926231 GTTACATAGGATACATGAAGGAATTGAGTTATAAAACTCTAGTCTAATTTAAAGCTCCGTCTGTT
256 GTTATATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTATTTGTT
** * * * * * * * *
6926296 TCGTGAAAAATGACTTTCGAAAAATGATTTATAC-ATTTTCATGTGTTTGTTTAGCATAAAATTG
321 T-AAGAAAAATAATTTTAGGAAAATGATTTCTACAATTTT-AGGTGTTTGTTTGGCA-AAAACTG
* * * * * * *
6926360 -GTTGATTAATAGAAAATGGCTTACTAATCAAC-GAAAATAAGGCTATTTTTCTAGAAATTATCT
383 AGTTG-TCAATAGAAAATGACTTA-T-GTCAACAAAAAATAAAGCCATTTTT-TAGAAATTGTCT
*
6926423 TATGC-TTTTAAAAATGGAA
444 TACGCTTTTTAAAAA-GGAA
6926442 GACATTTTCT
Statistics
Matches: 5037, Mismatches: 757, Indels: 625
0.78 0.12 0.10
Matches are distributed among these distances:
608 24 0.00
609 18 0.00
610 71 0.01
611 8 0.00
612 3 0.00
613 16 0.00
614 88 0.02
615 86 0.02
616 236 0.05
617 126 0.03
618 87 0.02
619 125 0.02
620 164 0.03
621 240 0.05
622 278 0.06
623 162 0.03
624 167 0.03
625 176 0.03
626 137 0.03
627 229 0.05
628 371 0.07
629 346 0.07
630 126 0.03
631 274 0.05
632 115 0.02
633 138 0.03
634 438 0.09
635 183 0.04
636 109 0.02
637 169 0.03
638 74 0.01
639 99 0.02
640 8 0.00
641 36 0.01
642 51 0.01
643 47 0.01
644 12 0.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (626 bp):
AAAGCAAAGCAACAGTCTAGCACATATATAAGACATTTCACATTTGGCTGGTCATTACTTTACAA
GGAAAAAATGTATAAAGCTAAATTTTTTTTTTTGTAATTCCTTATATGGTAAAACATATATACGG
AGAATTCAAATTTAATTTAATTGATTTATACAATTATTTTTAAAATAAACATCCAACATACTTAA
AATTTAAATATTAACATTTGTAATTTTTTTTTCAAATTGCAACATCCTTTGTAAAAAAAAGTTAT
ATAGGATGCATGAAGGAGTTGAGTTGTAAAACTCTAGTCTAATTTAAAGCTCTATTTGTTTAAGA
AAAATAATTTTAGGAAAATGATTTCTACAATTTTAGGTGTTTGTTTGGCAAAAACTGAGTTGTCA
ATAGAAAATGACTTATGTCAACAAAAAATAAAGCCATTTTTTAGAAATTGTCTTACGCTTTTTAA
AAAGGAAAATTTCTCAGGTTGTGATTTTTATCAATTGTATTATCAATCATTTTAAATAAATAATT
TTATAAATATCTTGAGAGCTTTGACTTTTTACGAGGTATTTTTTTTTAAATCTATCAAATGTATA
ATTCAATTCTCTAAATTTTCTCATATCCATCCACCTCAAAC
Found at i:6926824 original size:165 final size:165
Alignment explanation
Indices: 6926519--6926829 Score: 418
Period size: 165 Copynumber: 1.9 Consensus size: 165
6926509 TAAGTCGGAC
* * *
6926519 TTTGAATATAATTTTTTAAAATTAAACTTAATTTGACTCTATCTAAAATATTATTATACTAATAA
1 TTTGAATATAATATTTTAAAATCAAACTTAATTTGACTCGATCTAAAATATTATTATACTAATAA
* *
6926584 ATAATATTTTTTAATTTTACTTAAAAAATTAAAAAATTAATATTAAAAATCTTTTAATATTATAA
66 ATAATATTTTTTAATTTTAATTAAAAAATTAAAAAATTAACATTAAAAATCTTTTAATATTATAA
6926649 TGTTAAATATTTTTATAATTGTATTCAAGTAAGAT
131 TGTTAAATATTTTTATAATTGTATTCAAGTAAGAT
* * * *
6926684 TTTGAATATAATATTTTAAACTCAAATTTAATTTGATTCGA-CTTAAAATATTATTATATTAATA
1 TTTGAATATAATATTTTAAAATCAAACTTAATTTGACTCGATC-TAAAATATTATTATACTAATA
* * *
6926748 TA-AATATTTTATTCAATTTTAATTAAAAAATTAAAATATTAACATT-AAAGTCTTTGT-ATATT
65 AATAATATTTT-TT-AATTTTAATTAAAAAATTAAAAAATTAACATTAAAAATCTTT-TAATATT
6926810 -TCAAT-TTAAAATATTTTTAT
127 AT-AATGTT-AAATATTTTTAT
6926830 TTTATACATT
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
164 12 0.09
165 86 0.67
166 30 0.23
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (165 bp):
TTTGAATATAATATTTTAAAATCAAACTTAATTTGACTCGATCTAAAATATTATTATACTAATAA
ATAATATTTTTTAATTTTAATTAAAAAATTAAAAAATTAACATTAAAAATCTTTTAATATTATAA
TGTTAAATATTTTTATAATTGTATTCAAGTAAGAT
Found at i:6926958 original size:34 final size:33
Alignment explanation
Indices: 6926899--6926986 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 33
6926889 TATTTTTAGT
* * * *
6926899 ATTTTTATATTAACATAATATTTTAATATTAATT
1 ATTTTAATAATAA-ATAATTTTTTAATATTAATA
*
6926933 ATTATTAA-AATATAATTATTTTTTAATATTAATA
1 ATT-TTAATAATA-AATAATTTTTTAATATTAATA
6926967 ATTTTAATAATAAATAATTT
1 ATTTTAATAATAAATAATTT
6926987 CAATATACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
33 11 0.24
34 30 0.67
35 4 0.09
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (33 bp):
ATTTTAATAATAAATAATTTTTTAATATTAATA
Found at i:6926965 original size:17 final size:17
Alignment explanation
Indices: 6926919--6926971 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
6926909 TAACATAATA
6926919 TTTTAATATTAATTA-T
1 TTTTAATATTAATTATT
* *
6926935 TATTAAAATATAATTATT
1 TTTTAATAT-TAATTATT
*
6926953 TTTTAATATTAATAATT
1 TTTTAATATTAATTATT
6926970 TT
1 TT
6926972 AATAATAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 7 0.23
17 15 0.50
18 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAATATTAATTATT
Found at i:6928520 original size:18 final size:19
Alignment explanation
Indices: 6928492--6928552 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
6928482 ACTTTAAAAG
6928492 TTAATATTATAAATAAATT
1 TTAATATTATAAATAAATT
6928511 TTAA-ATTAT-AATAAAATAT
1 TTAATATTATAAAT-AAAT-T
* **
6928530 TTAATATGATACTTAAATT
1 TTAATATTATAAATAAATT
6928549 TTAA
1 TTAA
6928553 AAATTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 3 0.09
18 9 0.26
19 14 0.40
20 8 0.23
21 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
TTAATATTATAAATAAATT
Found at i:6928720 original size:36 final size:35
Alignment explanation
Indices: 6928680--6928750 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
6928670 ATTATAAATT
6928680 TATTAACTAA-TATGCTATTTAACTCTAATATTATTC
1 TATTAACTAAGTAT-C-ATTTAACTCTAATATTATTC
6928716 TATTAACTAATGTATCATTTAACTCTAATATTATT
1 TATTAACTAA-GTATCATTTAACTCTAATATTATT
6928751 AGTTTTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
36 29 0.88
37 1 0.03
38 3 0.09
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.48
Consensus pattern (35 bp):
TATTAACTAAGTATCATTTAACTCTAATATTATTC
Found at i:6928723 original size:20 final size:20
Alignment explanation
Indices: 6928696--6928750 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 20
6928686 CTAATATGCT
6928696 ATTTAACTCTAATATTATTC
1 ATTTAACTCTAATATTATTC
*
6928716 -TATTAA--CTAAT-GTA-TC
1 AT-TTAACTCTAATATTATTC
6928732 ATTTAACTCTAATATTATT
1 ATTTAACTCTAATATTATT
6928751 AGTTTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
16 6 0.22
17 3 0.11
18 10 0.37
19 3 0.11
20 5 0.19
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTAACTCTAATATTATTC
Found at i:6942347 original size:10 final size:10
Alignment explanation
Indices: 6942329--6942359 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
6942319 GGAGGGCCAA
*
6942329 GGAATGGAAG
1 GGAACGGAAG
6942339 GGAACGGAAG
1 GGAACGGAAG
6942349 GGAACGGAAG
1 GGAACGGAAG
6942359 G
1 G
6942360 AATTTATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.52, T:0.03
Consensus pattern (10 bp):
GGAACGGAAG
Found at i:6942793 original size:20 final size:19
Alignment explanation
Indices: 6942768--6942814 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
6942758 ATTTTGTGTA
*
6942768 TTATTACTTTTAATTATGTG
1 TTATTACTTTT-ATTATATG
*
6942788 TTATTA-TTTTTTTATATG
1 TTATTACTTTTATTATATG
6942806 TTATTACTT
1 TTATTACTT
6942815 ATAAATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 12 0.50
19 6 0.25
20 6 0.25
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.66
Consensus pattern (19 bp):
TTATTACTTTTATTATATG
Found at i:6943216 original size:19 final size:19
Alignment explanation
Indices: 6943189--6943243 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
6943179 ATTACATATT
*
6943189 TTATGTATTATTTTTTTTG
1 TTATGTATTATTTTTTTTA
* *
6943208 TTGTGTATTATTACTTTTTA
1 TTATGTATTATT-TTTTTTA
6943228 TTATGTATT-TTTTTTT
1 TTATGTATTATTTTTTT
6943244 AGTTATATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 4 0.13
19 13 0.43
20 13 0.43
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.73
Consensus pattern (19 bp):
TTATGTATTATTTTTTTTA
Found at i:6943314 original size:37 final size:39
Alignment explanation
Indices: 6943273--6943356 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
6943263 TAATTTTTTT
* *
6943273 TTTTTTTGGTGTTATCAC-CTT-TTGTTATATATTACTA
1 TTTTTTTGGTGATATCACTCTTCTTGTTATATATTACCA
*
6943310 TTTTTTAT-GTGATATCACTTTTCTTGTTATATATTACCA
1 TTTTTT-TGGTGATATCACTCTTCTTGTTATATATTACCA
6943349 TTTTTTTG
1 TTTTTTTG
6943357 TTATATCTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 15 0.38
38 4 0.10
39 21 0.52
ACGTcount: A:0.19, C:0.11, G:0.10, T:0.61
Consensus pattern (39 bp):
TTTTTTTGGTGATATCACTCTTCTTGTTATATATTACCA
Done.