Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 46 of 64
Found at i:7303677 original size:33 final size:33
Alignment explanation
Indices: 7303651--7303716 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
7303641 TAAGCCTAGC
* * *
7303651 TTAGCTGGTCCTTGGTTAAATTTTAAGCCCAAA
1 TTAGCTAGCCCTTGGTAAAATTTTAAGCCCAAA
*
7303684 TTGGCTAGCCCTTGGTAAAATTTTAAGCCCAAA
1 TTAGCTAGCCCTTGGTAAAATTTTAAGCCCAAA
7303717 AAATCTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (33 bp):
TTAGCTAGCCCTTGGTAAAATTTTAAGCCCAAA
Found at i:7304375 original size:33 final size:33
Alignment explanation
Indices: 7304306--7304508 Score: 162
Period size: 33 Copynumber: 6.2 Consensus size: 33
7304296 TTGGCTCTAC
* * ***
7304306 AGCTTAGCT-AGCCTTCAATAAAATTTTAAATTT
1 AGCTTAGCTGACCCTT-AGTAAAATTTTAAGCCT
* * * *
7304339 AGCTTAGTTGGCGCTTGGTAAAATTTTAAGCCT
1 AGCTTAGCTGACCCTTAGTAAAATTTTAAGCCT
* *
7304372 AGCTTAGCTGACCCTTAGTAAAGTTTTAAGCCC
1 AGCTTAGCTGACCCTTAGTAAAATTTTAAGCCT
* *
7304405 AGTTTAGCTGACCCTTAGTAAAATTTTAAGCTT
1 AGCTTAGCTGACCCTTAGTAAAATTTTAAGCCT
* * * *
7304438 AACTTAACT-AGCCTTTGGTAAAATTTTAAG-CT
1 AGCTTAGCTGA-CCCTTAGTAAAATTTTAAGCCT
** * *
7304470 CAAATTAGCTGACCCTCAAT-AAATTTTAAGCCT
1 -AGCTTAGCTGACCCTTAGTAAAATTTTAAGCCT
7304503 AGCTTA
1 AGCTTA
7304509 TAAAGAGCCT
Statistics
Matches: 132, Mismatches: 33, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
32 16 0.12
33 112 0.85
34 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (33 bp):
AGCTTAGCTGACCCTTAGTAAAATTTTAAGCCT
Found at i:7304426 original size:66 final size:66
Alignment explanation
Indices: 7304356--7304508 Score: 184
Period size: 66 Copynumber: 2.3 Consensus size: 66
7304346 TTGGCGCTTG
* * **
7304356 GTAAAATTTTAAGCCTAGCTTAGCT-GACCCTTAGTAAAGTTTTAAGCCCAGTTTAGCTGACCCT
1 GTAAAATTTTAAGCCTAGCTTAACTAG-CCCTTAGTAAAATTTTAAGCCCAAATTAGCTGACCCT
*
7304420 TA
65 CA
* * * * *
7304422 GTAAAATTTTAAGCTTAACTTAACTAGCCTTTGGTAAAATTTTAAGCTCAAATTAGCTGACCCTC
1 GTAAAATTTTAAGCCTAGCTTAACTAGCCCTTAGTAAAATTTTAAGCCCAAATTAGCTGACCCTC
7304487 A
66 A
*
7304488 AT-AAATTTTAAGCCTAGCTTA
1 GTAAAATTTTAAGCCTAGCTTA
7304509 TAAAGAGCCT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
65 17 0.23
66 55 0.75
67 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (66 bp):
GTAAAATTTTAAGCCTAGCTTAACTAGCCCTTAGTAAAATTTTAAGCCCAAATTAGCTGACCCTC
A
Found at i:7311527 original size:9 final size:8
Alignment explanation
Indices: 7311502--7311538 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
7311492 AAGTTGCTAG
7311502 AAAAGAAA
1 AAAAGAAA
*
7311510 GAAAGAAA
1 AAAAGAAA
7311518 AAAAGAAA
1 AAAAGAAA
7311526 AAAAGGAAA
1 AAAA-GAAA
7311535 AAAA
1 AAAA
7311539 TAATAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:7312144 original size:99 final size:99
Alignment explanation
Indices: 7311914--7312504 Score: 465
Period size: 99 Copynumber: 6.1 Consensus size: 99
7311904 TACCACCACT
* * * * **
7311914 GAAAAGATGCAATTCTAGCTTTAATAATTAGATAT---CACC---AAGATGCAAATGACTTCGGA
1 GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAGA
*
7311973 TATCACCACCGAAAGAAACTTGAATATCA-TCAT-
66 TATCACCACCGAAAGAAACTCGAATATCACT-ATC
* * * * * * *
7312006 AAAAAAATACAAGTCAAGCTTTAACATTTAGATATCACCACCAAGAAGATACCAATGAATTTAGA
1 GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAGA
* *
7312071 TATCGCCACCGAAAGAAAACTCGAATATCACTACC
66 TATCACCACCGAAAG-AAACTCGAATATCACTATC
* * * * * * * *
7312106 GAGAAAATGCAATTCAAGC-TTAACACTTGGATATCACCACTAAAAAGATACAAATAACTTCAAA
1 GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAGA
* * * * *
7312170 TATCGCCACTG-AAGGAACTCGAATATCACCATT
66 TATCACCACCGAAAGAAACTCGAATATCACTATC
* * * * * ** * *
7312203 AAAAAAATGCAATTCAAGCTTTAACAATCAAATTTCACCGTCGAGAAGATGTAAATGACTTT-GA
1 GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAG-
** * * * * *
7312267 ATATCACCGTCGAAGGAAACTCAAATATCATTGTT
65 ATATCACCACCGAAAGAAACTCGAATATCACTATC
* * * * * *
7312302 GAGAAAATGTAATTTAAGCTTTAACACTT-GAATATCACTACCAAGAAAATGCAAATGACTTT-T
1 GAAAAAATGCAATTCAAGCTTTAACACTTAG-ATATCACCACCAAGAAGATGCAAATGACTTTAG
* *
7312365 ATATTACCACC-AAAGGAAACTCGAATATCACCATC
65 ATATCACCACCGAAA-GAAACTCGAATATCACTATC
** * * *
7312400 GAAAAAATATAATTCAAGCTTTAACACTTAGATATCACCATCGAGAGGATGCAAATGACTTTAGA
1 GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAGA
** * *
7312465 TATCATTATC-AAAGAAAACTCGAATATCATTATC
66 TATCACCACCGAAAG-AAACTCGAATATCACTATC
7312499 GAAAAA
1 GAAAAA
7312505 TTTAGATATC
Statistics
Matches: 383, Mismatches: 99, Indels: 27
0.75 0.19 0.05
Matches are distributed among these distances:
92 28 0.07
95 4 0.01
97 34 0.09
98 144 0.38
99 157 0.41
100 16 0.04
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (99 bp):
GAAAAAATGCAATTCAAGCTTTAACACTTAGATATCACCACCAAGAAGATGCAAATGACTTTAGA
TATCACCACCGAAAGAAACTCGAATATCACTATC
Found at i:7312491 original size:24 final size:24
Alignment explanation
Indices: 7312464--7312544 Score: 112
Period size: 24 Copynumber: 3.5 Consensus size: 24
7312454 ATGACTTTAG
7312464 ATATCATTATCAAAGAAAACTCGA
1 ATATCATTATCAAAGAAAACTCGA
* ** *
7312488 ATATCATTATCGAA-AAATTTAG-
1 ATATCATTATCAAAGAAAACTCGA
7312510 ATATCATTATCAAAGAAAACTCGA
1 ATATCATTATCAAAGAAAACTCGA
7312534 ATATCATTATC
1 ATATCATTATC
7312545 GAAAAAATAC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
22 13 0.28
23 10 0.21
24 24 0.51
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (24 bp):
ATATCATTATCAAAGAAAACTCGA
Found at i:7312493 original size:197 final size:196
Alignment explanation
Indices: 7311953--7312505 Score: 578
Period size: 197 Copynumber: 2.8 Consensus size: 196
7311943 AGATATCACC
** * *
7311953 AAGATGCAAATGACTTCGGATATCACCACCGAAA-GAAACTTGAATATCATCATAAAAAAATACA
1 AAGATGCAAATGACTTCAAATATCACCACC-AAAGGAAACTCGAATATCACCATAAAAAAATACA
* * * * * * * * *
7312017 AGTCAAGCTTTAACATTTAGATATCACCACCAAGAAGATACCAATGAATTTAGATATCGCCACCG
65 ATTCAAGCTTTAACAATTAGATATCACCATCGAGAAGATGCAAATGACTTTAGATATCACCATC-
* * *
7312082 AAAGAAAACTCGAATATCACTACCGAGAAAATGCAATTCAAGCTTAACACTTGGATATCACCACT
129 AAAGAAAACTCGAATATCATTACCGAGAAAATGCAATTCAAGCTTAACACTTGAATATCACCACC
7312147 AAA
194 AAA
* * * ** *
7312150 AAGATACAAATAACTTCAAATATCGCCACTGAAGG-AACTCGAATATCACCATTAAAAAAATGCA
1 AAGATGCAAATGACTTCAAATATCACCACCAAAGGAAACTCGAATATCACCA-TAAAAAAATACA
* * * * * *
7312214 ATTCAAGCTTTAACAATCAAATTTCACCGTCGAGAAGATGTAAATGACTTT-GAATATCACCGTC
65 ATTCAAGCTTTAACAATTAGATATCACCATCGAGAAGATGCAAATGACTTTAG-ATATCACCATC
* * * *** * * *
7312278 GAAGGAAACTCAAATATCATTGTTGAGAAAATGTAATTTAAGCTTTAACACTTGAATATCACTAC
129 AAAGAAAACTCGAATATCATTACCGAGAAAATGCAATTCAAGC-TTAACACTTGAATATCACCAC
7312343 CAAGA
193 CAA-A
** * * *
7312348 AA-ATGCAAATGACTT-TTATATTACCACCAAAGGAAACTCGAATATCACCATCGAAAAAATATA
1 AAGATGCAAATGACTTCAAATATCACCACCAAAGGAAACTCGAATATCACCAT-AAAAAAATACA
* * **
7312411 ATTCAAGCTTTAACACTTAGATATCACCATCGAGAGGATGCAAATGACTTTAGATATCATTATCA
65 ATTCAAGCTTTAACAATTAGATATCACCATCGAGAAGATGCAAATGACTTTAGATATCACCATCA
*
7312476 AAGAAAACTCGAATATCATTATCGA-AAAAT
130 AAGAAAACTCGAATATCATTACCGAGAAAAT
7312506 TTAGATATCA
Statistics
Matches: 285, Mismatches: 63, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
196 69 0.24
197 212 0.74
198 4 0.01
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (196 bp):
AAGATGCAAATGACTTCAAATATCACCACCAAAGGAAACTCGAATATCACCATAAAAAAATACAA
TTCAAGCTTTAACAATTAGATATCACCATCGAGAAGATGCAAATGACTTTAGATATCACCATCAA
AGAAAACTCGAATATCATTACCGAGAAAATGCAATTCAAGCTTAACACTTGAATATCACCACCAA
A
Found at i:7312505 original size:98 final size:98
Alignment explanation
Indices: 7311953--7312505 Score: 429
Period size: 98 Copynumber: 5.6 Consensus size: 98
7311943 AGATATCACC
** * * ** *
7311953 AAGATGCAAATGACTTCGGATATCACCACCGAAAGAAACTTGAATATCATCATAAAAAAATACAA
1 AAGATGCAAATGACTTTAGATATCACCACCGAAAGAAACTCGAATATCACCATCGAAAAATATAA
* *
7312018 GTCAAGCTTTAACATTTAGATATCACCACCAAG
66 TTCAAGCTTTAACACTTAGATATCACCACCAAG
* * * * * * **
7312051 AAGATACCAATGAATTTAGATATCGCCACCGAAAGAAAACTCGAATATCACTACCGAGAAAATGC
1 AAGATGCAAATGACTTTAGATATCACCACCGAAAG-AAACTCGAATATCACCATCGA-AAAATAT
* * *
7312116 AATTCAAGC-TTAACACTTGGATATCACCACTAAA
64 AATTCAAGCTTTAACACTTAGATATCACCACCAAG
* * * * * * * * *
7312150 AAGATACAAATAACTTCAAATATCGCCACTG-AAGGAACTCGAATATCACCAT-TAAAAAAATGC
1 AAGATGCAAATGACTTTAGATATCACCACCGAAAGAAACTCGAATATCACCATCGAAAAATAT--
* * * * ** *
7312213 AATTCAAGCTTTAACAATCAAATTTCACCGTCGAG
64 AATTCAAGCTTTAACACTTAGATATCACCACCAAG
* ** * * *** * *
7312248 AAGATGTAAATGACTTT-GAATATCACCGTCGAAGGAAACTCAAATATCATTGTTGAGAAAATGT
1 AAGATGCAAATGACTTTAG-ATATCACCACCGAAAGAAACTCGAATATCACCATCGA-AAAATAT
* *
7312312 AATTTAAGCTTTAACACTT-GAATATCACTACCAAG
64 AATTCAAGCTTTAACACTTAG-ATATCACCACCAAG
* * *
7312347 AAAATGCAAATGACTTT-TATATTACCACC-AAAGGAAACTCGAATATCACCATCGAAAAAATAT
1 AAGATGCAAATGACTTTAGATATCACCACCGAAA-GAAACTCGAATATCACCATCG-AAAAATAT
* *
7312410 AATTCAAGCTTTAACACTTAGATATCACCATCGAG
64 AATTCAAGCTTTAACACTTAGATATCACCACCAAG
* ** * **
7312445 AGGATGCAAATGACTTTAGATATCATTATC-AAAGAAAACTCGAATATCATTATCGAAAAAT
1 AAGATGCAAATGACTTTAGATATCACCACCGAAAG-AAACTCGAATATCACCATCGAAAAAT
7312506 TTAGATATCA
Statistics
Matches: 346, Mismatches: 94, Indels: 30
0.74 0.20 0.06
Matches are distributed among these distances:
95 4 0.01
96 1 0.00
97 26 0.08
98 149 0.43
99 146 0.42
100 15 0.04
101 5 0.01
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (98 bp):
AAGATGCAAATGACTTTAGATATCACCACCGAAAGAAACTCGAATATCACCATCGAAAAATATAA
TTCAAGCTTTAACACTTAGATATCACCACCAAG
Found at i:7312526 original size:46 final size:46
Alignment explanation
Indices: 7312459--7312550 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
7312449 TGCAAATGAC
7312459 TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
1 TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
7312505 TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
1 TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
7312551 ATACAATTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (46 bp):
TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
Found at i:7312650 original size:145 final size:145
Alignment explanation
Indices: 7312375--7312648 Score: 376
Period size: 145 Copynumber: 1.9 Consensus size: 145
7312365 ATATTACCAC
* *
7312375 CAAAGGAAACTCGAATATCACCATCGAAAAAATATAATTCAAGCTTTAACACTTAGATATCACCA
1 CAAAGAAAACTCGAATATCACCATCGAAAAAATACAATTCAAGCTTTAACACTTAGATATCACCA
* * ** **
7312440 TCGAGAGGATGCAAATGACTTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAA
66 TCAAGAAGATGCAAATGACTTTAGATATCACCATCAAAGAAAACTCGAATATCACCATCGAAAAA
7312505 TTTAGATATCATTAT
131 TTTAGATATCATTAT
** *
7312520 CAAAGAAAACTCGAATATCATTATCGAAAAAATACAATTCAAGCTTTAACA-TTCAGATTTCACC
1 CAAAGAAAACTCGAATATCACCATCGAAAAAATACAATTCAAGCTTTAACACTT-AGATATCACC
* *
7312584 A-CTAAGAAGATGCAAATGACTTT-TATATTACCA-CTAAAGAAAACTCGAATATCACCATCGAA
65 ATC-AAGAAGATGCAAATGACTTTAGATATCACCATC-AAAGAAAACTCGAATATCACCATCGAA
7312646 AAA
128 AAA
7312649 ATATAATTCA
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
143 1 0.01
144 37 0.33
145 75 0.66
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (145 bp):
CAAAGAAAACTCGAATATCACCATCGAAAAAATACAATTCAAGCTTTAACACTTAGATATCACCA
TCAAGAAGATGCAAATGACTTTAGATATCACCATCAAAGAAAACTCGAATATCACCATCGAAAAA
TTTAGATATCATTAT
Found at i:7312694 original size:98 final size:97
Alignment explanation
Indices: 7312518--7312888 Score: 367
Period size: 98 Copynumber: 3.8 Consensus size: 97
7312508 AGATATCATT
* **
7312518 ATCAAAGAAAACTCGAATATCATTATCGAAAAAATACAATTCAAGCTTTAACATTCAGATTTCAC
1 ATCAAAGAAAACTCAAATATCACCATCGAAAAAATACAATTCAAGCTTTAACATTCAGATTTCAC
* *
7312583 CACTAAGAAGATGCAAATGACTTTTATATTACC
66 CACTGAGAAGATGCAAATGACTTTGATATTA-C
* * * *
7312616 A-CTAAAGAAAACTCGAATATCACCATCGAAAAAATATAATTCAAGGTTTAACACTT-AGATATC
1 ATC-AAAGAAAACTCAAATATCACCATCGAAAAAATACAATTCAAGCTTTAACA-TTCAGATTTC
* * * *
7312679 ATCACCGAGAGGATGC-AATGACTTTAGATATCGT-T
64 ACCACTGAGAAGATGCAAATGACTTT-GATAT--TAC
** * *
7312714 ATCAAAGAAAACTCAAATATCATTATCAAAAAAATGCAATTCAAGCTTTAACATTCAGATTTCAC
1 ATCAAAGAAAACTCAAATATCACCATCGAAAAAATACAATTCAAGCTTTAACATTCAGATTTCAC
* * * *
7312779 CACTGAGAATATGCAACTGACTTCGGATGTTAC
66 CACTGAGAAGATGCAAATGACTT-TGATATTAC
* ** * * *
7312812 AATCGAA-AAAACTCAAATATCACCATCGAAAAAATGTAATTCAAGTTTTAACACTC-GAATATC
1 -ATCAAAGAAAACTCAAATATCACCATCGAAAAAATACAATTCAAGCTTTAACATTCAG-ATTTC
*
7312875 ACCACTGAAAAGAT
64 ACCACTGAGAAGAT
7312889 ATATAAATGA
Statistics
Matches: 224, Mismatches: 37, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
97 14 0.06
98 190 0.85
99 19 0.08
100 1 0.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.27
Consensus pattern (97 bp):
ATCAAAGAAAACTCAAATATCACCATCGAAAAAATACAATTCAAGCTTTAACATTCAGATTTCAC
CACTGAGAAGATGCAAATGACTTTGATATTAC
Found at i:7312737 original size:196 final size:196
Alignment explanation
Indices: 7312505--7312866 Score: 557
Period size: 196 Copynumber: 1.8 Consensus size: 196
7312495 TATCGAAAAA
* *
7312505 TTTAGATATCATTATCAAAGAAAACTCGAATATCATTATCGAAAAAATACAATTCAAGCTTTAAC
1 TTTAGATATCATTATCAAAGAAAACTCAAATATCATTATCAAAAAAATACAATTCAAGCTTTAAC
** * *
7312570 ATTCAGATTTCACCACTAAGAAGATGCAAATGACTT-TTATATTACCA-CTAAAGAAAACTCGAA
66 ATTCAGATTTCACCACTAAGAAGATGCAAATGACTTCGGATATTACAATC-AAA-AAAACTCAAA
7312633 TATCACCATCGAAAAAATATAATTCAAGGTTTAACACTTAGATATCATCACCGAGAGGATGCAAT
129 TATCACCATCGAAAAAATATAATTCAAGGTTTAACACTTAGATATCATCACCGAGAGGATGCAAT
7312698 GAC
194 GAC
* *
7312701 TTTAGATATCGTTATCAAAGAAAACTCAAATATCATTATCAAAAAAATGCAATTCAAGCTTTAAC
1 TTTAGATATCATTATCAAAGAAAACTCAAATATCATTATCAAAAAAATACAATTCAAGCTTTAAC
* * * * *
7312766 ATTCAGATTTCACCACTGAGAATATGCAACTGACTTCGGATGTTACAATCGAAAAAACTCAAATA
66 ATTCAGATTTCACCACTAAGAAGATGCAAATGACTTCGGATATTACAATCAAAAAAACTCAAATA
* *
7312831 TCACCATCGAAAAAATGTAATTCAAGTTTTAACACT
131 TCACCATCGAAAAAATATAATTCAAGGTTTAACACT
7312867 CGAATATCAC
Statistics
Matches: 149, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
196 139 0.93
197 9 0.06
198 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (196 bp):
TTTAGATATCATTATCAAAGAAAACTCAAATATCATTATCAAAAAAATACAATTCAAGCTTTAAC
ATTCAGATTTCACCACTAAGAAGATGCAAATGACTTCGGATATTACAATCAAAAAAACTCAAATA
TCACCATCGAAAAAATATAATTCAAGGTTTAACACTTAGATATCATCACCGAGAGGATGCAATGA
C
Found at i:7313229 original size:99 final size:98
Alignment explanation
Indices: 7312901--7313340 Score: 474
Period size: 99 Copynumber: 4.4 Consensus size: 98
7312891 ATAAATGACT
* * *
7312901 TTTAATCACTCGGATATCACCATC-AAGAAGATGCAAATGACTTGGGATATCACCA-CAGAAAGA
1 TTTAA-CACTCGAATATCACCATCGAA-AAGATGCAAATGACTTCGGATATCACCACCA-AAGGA
7312964 AACTCGAATATCACCATAAAAAAATGTAATTCAAGC
63 AACTCGAATATCACCATAAAAAAATGTAATTCAAGC
* * * * * * ** *
7313000 CTTAACATTCGGATATCATCA-CTGAAAATATGCAAATGACTTTGGATATTTCCACCAAAGAAAA
1 TTTAACACTCGAATATCACCATC-GAAAAGATGCAAATGACTTCGGATATCACCACCAAAGGAAA
* * **
7313064 CTTGAATATCACTATCGAAAAAAATGTAATTTGAGC
65 CTCGAATATCACCAT--AAAAAAATGTAATTCAAGC
* * * * *
7313100 TTTAACACTCGGATATCACAATCGAAAAGATACAAATGACTTCAGATATCGCCACCAAAGGAAAC
1 TTTAACACTCGAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACCAAAGGAAAC
* *
7313165 TCGAATACCACAATAAAAAAAATGTAATTCAAGC
66 TCGAATATCACCAT-AAAAAAATGTAATTCAAGC
* * * * * *
7313199 TTTAACATTCAAATATCACCATCGAGAAGATGCAAATGACTTCGGATATCATCATCGAAGGAAAC
1 TTTAACACTCGAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACCAAAGGAAAC
* *
7313264 TCTAATATCACCATTAAGAAAATGTAATTCAAGC
66 TCGAATATCACCA-TAAAAAAATGTAATTCAAGC
*
7313298 TTTAACACTCGAATATCACTATC-AATAAGATGCAAATTGACTT
1 TTTAACACTCGAATATCACCATCGAA-AAGATGCAAA-TGACTT
7313341 TTAATCACTC
Statistics
Matches: 283, Mismatches: 49, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
97 1 0.00
98 57 0.20
99 137 0.48
100 87 0.31
101 1 0.00
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (98 bp):
TTTAACACTCGAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACCAAAGGAAAC
TCGAATATCACCATAAAAAAATGTAATTCAAGC
Found at i:7313288 original size:198 final size:198
Alignment explanation
Indices: 7312901--7313340 Score: 523
Period size: 198 Copynumber: 2.2 Consensus size: 198
7312891 ATAAATGACT
* **
7312901 TTTAATCACTCGGATATCACCATCAAGAAGATGCAAATGACTTGGGATATCACCACAGAAAGAAA
1 TTTAA-CACTCGGATATCACAATCAAGAAGATGCAAATGACTTCAGATATCACCACAGAAAGAAA
* * ** * *
7312966 CTCGAATATCACCATAAAAAAATGTAATTCAAGCCTTAACATTCGGATATCATCACTGAAAATAT
65 CTCGAATACCACAATAAAAAAATGTAATTCAAGCCTTAACATTCAAATATCACCACTGAAAAGAT
* * * *
7313031 GCAAATGACTTTGGATATTTCCACCAAAGAAAACTTGAATATCACTATCGAAAAAAATGTAATTT
130 GCAAATGACTTCGGATATATCCACCAAAGAAAACTTGAATATCACCATCGAAAAAAATGTAATTC
*
7313096 GAGC
195 AAGC
* * *
7313100 TTTAACACTCGGATATCACAATCGAA-AAGATACAAATGACTTCAGATATCGCCACCA-AAGGAA
1 TTTAACACTCGGATATCACAATC-AAGAAGATGCAAATGACTTCAGATATCACCA-CAGAAAGAA
* *
7313163 ACTCGAATACCACAATAAAAAAAATGTAATTCAAGCTTTAACATTCAAATATCACCA-TCGAGAA
64 ACTCGAATACCACAAT-AAAAAAATGTAATTCAAGCCTTAACATTCAAATATCACCACT-GAAAA
* * * * *
7313227 GATGCAAATGACTTCGGATATCAT-CATCGAAGGAAACTCT-AATATCACCAT-TAAGAAAATGT
127 GATGCAAATGACTTCGGATAT-ATCCACCAAAGAAAACT-TGAATATCACCATCGAAAAAAATGT
7313289 AATTCAAGC
190 AATTCAAGC
* * *
7313298 TTTAACACTCGAATATCACTATCAATAAGATGCAAATTGACTT
1 TTTAACACTCGGATATCACAATCAAGAAGATGCAAA-TGACTT
7313341 TTAATCACTC
Statistics
Matches: 206, Mismatches: 27, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
197 2 0.01
198 107 0.52
199 95 0.46
200 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (198 bp):
TTTAACACTCGGATATCACAATCAAGAAGATGCAAATGACTTCAGATATCACCACAGAAAGAAAC
TCGAATACCACAATAAAAAAATGTAATTCAAGCCTTAACATTCAAATATCACCACTGAAAAGATG
CAAATGACTTCGGATATATCCACCAAAGAAAACTTGAATATCACCATCGAAAAAAATGTAATTCA
AGC
Found at i:7313355 original size:241 final size:239
Alignment explanation
Indices: 7313067--7313689 Score: 652
Period size: 241 Copynumber: 2.6 Consensus size: 239
7313057 AAGAAAACTT
* * *
7313067 GAATATCACTATCGAAAAAAATGTAATTTGAGC-TTTAA-CACTCGGATATCACAATCGAAAAGA
1 GAATATCACTATC-AAAAAGATGCAAATTGA-CTTTTAATCACTCGGATATCACAATCGAAAAGA
* * * *
7313130 TACAAATGACTTCAGATATCGCCACCAAAGGAAACTCGAATACCACAATAAAAAAAATGTAATTC
64 TACAAATGACTTCAGATATCACCA-CAAAAGAAACTCGAATATCACAAT-AAGAAAATGTAATTC
* * *
7313195 AAGCTTTAACATTCAAATATCACCATCGAGAAGATGCAAATGACTTCGGATATCATCA-TCGAAG
127 AAGCTTTAACATTCAAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACT-AAAG
* * ** *
7313259 GAAACTCTAATATCACCATTAAGAAAATGTAATTCAAGCTTTAACACTC
191 AAAACTCGAATATCACCATTAAGAAAATACAATTCAAACTTTAACACTC
* *** *
7313308 GAATATCACTATCAATAAGATGCAAATTGACTTTTAATCACTCGGATATCGTTA-CTGAAAAAAT
1 GAATATCACTATCAAAAAGATGCAAATTGACTTTTAATCACTCGGATATCACAATC-GAAAAGAT
* * * * *
7313372 GCAAATGACTTCAGATATCACCGTA-AAAAAAAACTTGAATATCACAACTGAGAAAATATAATTC
65 ACAAATGACTTCAGATATCACC--ACAAAAGAAACTCGAATATCACAA-TAAGAAAATGTAATTC
*** * *
7313436 AAGCTTTAACATTTGGATATCATCATCGAAAAGATGCAAATGACTTCGGATATCGCCACTAAAGA
127 AAGCTTTAACATTCAAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACTAAAGA
** * *
7313501 AAACTCGAATATCATTATTGAGAAAATACAATTCAAACTTTAACACTT
192 AAACTCGAATATCACCATTAAGAAAATACAATTCAAACTTTAACACTC
* * * * * * *
7313549 GGATATCACCATCGAGAAGATGCAAA-TGACTTTTAATCACTCGAATATCATCACT-GAGAAGAT
1 GAATATCACTATCAAAAAGATGCAAATTGACTTTTAATCACTCGGATATCA-CAATCGAAAAGAT
* * * *
7313612 ACAAATGACTTC-GAAGATCATCATCGAAAGAAACTCGAATATCA-ATGTCAAGAAAATGTAATT
65 ACAAATGACTTCAG-ATATCACCA-CAAAAGAAACTCGAATATCACA-AT-AAGAAAATGTAATT
7313675 CAAGCTTTAACATTC
126 CAAGCTTTAACATTC
7313690 GGATATCGCC
Statistics
Matches: 313, Mismatches: 55, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
238 1 0.00
239 4 0.01
240 106 0.34
241 199 0.64
242 2 0.01
243 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (239 bp):
GAATATCACTATCAAAAAGATGCAAATTGACTTTTAATCACTCGGATATCACAATCGAAAAGATA
CAAATGACTTCAGATATCACCACAAAAGAAACTCGAATATCACAATAAGAAAATGTAATTCAAGC
TTTAACATTCAAATATCACCATCGAAAAGATGCAAATGACTTCGGATATCACCACTAAAGAAAAC
TCGAATATCACCATTAAGAAAATACAATTCAAACTTTAACACTC
Found at i:7313480 original size:99 final size:99
Alignment explanation
Indices: 7313364--7313580 Score: 292
Period size: 99 Copynumber: 2.2 Consensus size: 99
7313354 TATCGTTACT
* * *
7313364 GAAAAAATGCAAATGACTTCAGATATCACC-GTAAAAAAAAACTTGAATATCACAACTGAGAAAA
1 GAAAAGATGCAAATGACTTCAGATATCACCACT-AAAAAAAACTCGAATATCACAACTGAGAAAA
* * * *
7313428 TATAATTCAAGCTTTAACATTTGGATATCATCATC
65 TACAATTCAAACTTTAACACTTGGATATCACCATC
* * * ** *
7313463 GAAAAGATGCAAATGACTTCGGATATCGCCACTAAAGAAAACTCGAATATCATTATTGAGAAAAT
1 GAAAAGATGCAAATGACTTCAGATATCACCACTAAAAAAAACTCGAATATCACAACTGAGAAAAT
7313528 ACAATTCAAACTTTAACACTTGGATATCACCATC
66 ACAATTCAAACTTTAACACTTGGATATCACCATC
*
7313562 GAGAAGATGCAAATGACTT
1 GAAAAGATGCAAATGACTT
7313581 TTAATCACTC
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
99 102 0.99
100 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.25
Consensus pattern (99 bp):
GAAAAGATGCAAATGACTTCAGATATCACCACTAAAAAAAACTCGAATATCACAACTGAGAAAAT
ACAATTCAAACTTTAACACTTGGATATCACCATC
Found at i:7314417 original size:37 final size:35
Alignment explanation
Indices: 7314329--7314429 Score: 130
Period size: 36 Copynumber: 2.8 Consensus size: 35
7314319 TAAAATGATG
*
7314329 ATGCAAATGTTTTTTTTTTTTAAATGATGCATATAAA
1 ATGCAAATG--TTTTTTTTTTAAATGATGCACATAAA
* * *
7314366 ATGAAAATGTTTTTTTCTTAAAATGATGCACATGAA
1 ATGCAAATGTTTTTTT-TTTAAATGATGCACATAAA
7314402 ATGCAAATGTCTTTTTTTTTAAATGATG
1 ATGCAAATGT-TTTTTTTTTAAATGATG
7314430 AAAATGTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
35 7 0.12
36 35 0.62
37 14 0.25
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.46
Consensus pattern (35 bp):
ATGCAAATGTTTTTTTTTTAAATGATGCACATAAA
Found at i:7314449 original size:24 final size:25
Alignment explanation
Indices: 7314406--7314453 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
7314396 CATGAAATGC
*
7314406 AAATGTCTTTTTTTTTAAATGATGA
1 AAATGTCTTTTTTTTAAAATGATGA
7314431 AAATGTC-TTTTTTTAAAATGATG
1 AAATGTCTTTTTTTTAAAATGATG
7314454 CACATGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.50
Consensus pattern (25 bp):
AAATGTCTTTTTTTTAAAATGATGA
Found at i:7315804 original size:21 final size:22
Alignment explanation
Indices: 7315779--7315820 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
7315769 TCTTTTTCTC
7315779 TTTCTTTTTTTTTT-TTGTTTT
1 TTTCTTTTTTTTTTATTGTTTT
7315800 TTTCTTTTTTTTTTATTGTTT
1 TTTCTTTTTTTTTTATTGTTT
7315821 CCATTTTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.02, C:0.05, G:0.05, T:0.88
Consensus pattern (22 bp):
TTTCTTTTTTTTTTATTGTTTT
Found at i:7315811 original size:22 final size:21
Alignment explanation
Indices: 7315779--7315820 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
7315769 TCTTTTTCTC
*
7315779 TTTCTTTTTTTTTTTTGTTTT
1 TTTCTTTTTTTTTATTGTTTT
7315800 TTTCTTTTTTTTTTATTGTTT
1 TTTC-TTTTTTTTTATTGTTT
7315821 CCATTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.02, C:0.05, G:0.05, T:0.88
Consensus pattern (21 bp):
TTTCTTTTTTTTTATTGTTTT
Found at i:7315827 original size:19 final size:19
Alignment explanation
Indices: 7315786--7315828 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7315776 CTCTTTCTTT
* * * *
7315786 TTTTTTTTTGTTTTTTTCT
1 TTTTTTTTTATTGTTTCCA
7315805 TTTTTTTTTATTGTTTCCA
1 TTTTTTTTTATTGTTTCCA
7315824 TTTTT
1 TTTTT
7315829 GCTCTTTCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.84
Consensus pattern (19 bp):
TTTTTTTTTATTGTTTCCA
Found at i:7319228 original size:23 final size:23
Alignment explanation
Indices: 7319195--7319251 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
7319185 TAAAAAAATG
7319195 TTTTTTG--TTGTT-TTGAGATTT
1 TTTTTTGTTTTGTTGTTGAG-TTT
**
7319216 TTTTTTGTTTTGTTGTTTTGTTT
1 TTTTTTGTTTTGTTGTTGAGTTT
*
7319239 TTCTTTGTTTTGT
1 TTTTTTGTTTTGT
7319252 ATTCTTACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 7 0.23
23 20 0.67
24 3 0.10
ACGTcount: A:0.04, C:0.02, G:0.18, T:0.77
Consensus pattern (23 bp):
TTTTTTGTTTTGTTGTTGAGTTT
Found at i:7319234 original size:18 final size:17
Alignment explanation
Indices: 7319193--7319240 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
7319183 ATTAAAAAAA
*
7319193 TGTTTTTTGTTGTTTTG
1 TGTTTTTTTTTGTTTTG
*
7319210 AGATTTTTTTTTGTTTTG
1 TG-TTTTTTTTTGTTTTG
7319228 TTGTTTTGTTTTT
1 -TGTTTT-TTTTT
7319241 CTTTGTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 1 0.04
18 18 0.72
19 6 0.24
ACGTcount: A:0.04, C:0.00, G:0.19, T:0.77
Consensus pattern (17 bp):
TGTTTTTTTTTGTTTTG
Found at i:7320860 original size:21 final size:21
Alignment explanation
Indices: 7320836--7320880 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7320826 AAACATGCAT
* * *
7320836 AAATATTAATAATAAAATTTA
1 AAATAATAAAAATAAAATATA
*
7320857 AAATAATAAAAATAATATATA
1 AAATAATAAAAATAAAATATA
7320878 AAA
1 AAA
7320881 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATAATAAAAATAAAATATA
Found at i:7321725 original size:21 final size:22
Alignment explanation
Indices: 7321678--7321729 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
7321668 ACCAGCTCCT
* * *
7321678 GGTGGCTGTCATGGTGGTTGTC
1 GGTGGCTGTCATGATGGCTATC
*
7321700 AGTGG-TGTCATGATGGCTATC
1 GGTGGCTGTCATGATGGCTATC
7321721 GGTGGCTGT
1 GGTGGCTGT
7321730 TAGACAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.10, C:0.13, G:0.42, T:0.35
Consensus pattern (22 bp):
GGTGGCTGTCATGATGGCTATC
Found at i:7322654 original size:17 final size:17
Alignment explanation
Indices: 7322632--7322664 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7322622 TTATTTTTCA
*
7322632 AAAGTTTCAAAGCCTCT
1 AAAGTTCCAAAGCCTCT
7322649 AAAGTTCCAAAGCCTC
1 AAAGTTCCAAAGCCTC
7322665 AATTGTGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAGTTCCAAAGCCTCT
Found at i:7322708 original size:42 final size:43
Alignment explanation
Indices: 7322649--7323013 Score: 384
Period size: 43 Copynumber: 8.5 Consensus size: 43
7322639 CAAAGCCTCT
* *
7322649 AAAGTTCCAAAGCCTCAATTGTGGGGGAG-ATTTTATTTTTCA
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* * * *
7322691 AAAGTTTCAAAGTCTCAATTATGGAGGAGCATTTTA-TTTTC-
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* * *
7322732 AAAGTTTCGAAA-CCTCAATTGTGGGAGAGCATTTTATTTTTTA
1 AAAGTTTC-AAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* * * * *
7322775 AAAGTTCCAAAGCCTTAGTTGTGAGAGAGCATTTTATTTTTGA
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* *
7322818 AAAGTTTCAAAGCCTTAGTTGTGGGAGGGGGAGCATTTTATATTTCA
1 AAAGTTTCAAAGCCTCAGTTGT----GGGGGAGCATTTTATTTTTCA
* * * *
7322865 AAAGTTCCAAAGCCTCAGTTGTAGGGAAGTATTTTA-TTTTC-
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* * * * *
7322906 AAAGTTCCAAAGCCTTAGTTGTGAGGGA-TATTTTATTTTCCA
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
* *
7322948 AAAGTTTCAAAGCCTCAGTTGTGGGAGATCATTTTATTTTTCA
1 AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
*
7322991 AAAGTTTCAAAGTCTCAGTTGTG
1 AAAGTTTCAAAGCCTCAGTTGTG
7323014 AAGGAACATT
Statistics
Matches: 274, Mismatches: 37, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
40 7 0.03
41 56 0.20
42 68 0.25
43 106 0.39
47 37 0.14
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (43 bp):
AAAGTTTCAAAGCCTCAGTTGTGGGGGAGCATTTTATTTTTCA
Found at i:7322970 original size:173 final size:173
Alignment explanation
Indices: 7322671--7323013 Score: 442
Period size: 173 Copynumber: 2.0 Consensus size: 173
7322661 CCTCAATTGT
* * * *
7322671 GGGGGAGATTTTATTTTTCAAAAGTTTCAAAGTCTCAATTATGGAGGAGCATTTTATTTTCAAAG
1 GGGGGAGATTTTATATTTCAAAAGTTCCAAAGCCTCAATTATGGAGAAGCATTTTATTTTCAAAG
* ** *
7322736 TTTCGAAACCTCAATTGTGGGAGAGCATTTTATTTTTTAAAAGTTCCAAAGCCTTAGTTGTGAGA
66 TTTCCAAACCTCAATTGTGGGAGAGCATTTTATTTTCCAAAAGTTCCAAAGCCTCAGTTGTGAGA
* *
7322801 GAGCATTTTATTTTTGAAAAGTTTCAAAGCCTTAGTTGTGGGA
131 GAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGA
* * *
7322844 GGGGGAGCATTTTATATTTCAAAAGTTCCAAAGCCTCAGTTGTAGG-GAAGTATTTTATTTTCAA
1 GGGGGAG-ATTTTATATTTCAAAAGTTCCAAAGCCTCAATTAT-GGAGAAGCATTTTATTTTCAA
* * * *
7322908 AG-TTCCAAAGCCTTAGTTGTGAGG-GA-TATTTTATTTTCCAAAAGTTTCAAAGCCTCAGTTGT
64 AGTTTCCAAA-CCTCAATTGTG-GGAGAGCATTTTATTTTCCAAAAGTTCCAAAGCCTCAGTTGT
* * *
7322970 GGGAGATCATTTTATTTTTCAAAAGTTTCAAAGTCTCAGTTGTG
127 GAGAGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTG
7323014 AAGGAACATT
Statistics
Matches: 146, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
173 83 0.57
174 59 0.40
175 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (173 bp):
GGGGGAGATTTTATATTTCAAAAGTTCCAAAGCCTCAATTATGGAGAAGCATTTTATTTTCAAAG
TTTCCAAACCTCAATTGTGGGAGAGCATTTTATTTTCCAAAAGTTCCAAAGCCTCAGTTGTGAGA
GAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGA
Found at i:7323910 original size:21 final size:19
Alignment explanation
Indices: 7323872--7323939 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 19
7323862 TTACTTTTAT
*
7323872 TTTTATATTTATTTGCATG
1 TTTTATATTTAATTGCATG
7323891 TTTTATATTGTTAATTGCATG
1 TTTTATA-T-TTAATTGCATG
** *
7323912 ATAATATATATATATT-CATG
1 -TTTTATATTTA-ATTGCATG
7323932 TTTTATAT
1 TTTTATAT
7323940 AATTTTTACA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
19 13 0.33
20 7 0.18
21 14 0.36
22 5 0.13
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.57
Consensus pattern (19 bp):
TTTTATATTTAATTGCATG
Found at i:7324024 original size:111 final size:111
Alignment explanation
Indices: 7323830--7324037 Score: 353
Period size: 111 Copynumber: 1.9 Consensus size: 111
7323820 TTTTTCTGTG
** * **
7323830 ATTTTTACATAAATTTTATAATATTGAATTGTTTACTTTTATTTTTATATTTATTTGCATGTTTT
1 ATTTTTACATAAATTTTATAATATTGAATTGCCTACTCTTATTTTTATATTTATTTGCATGCCTT
7323895 ATATTGTTAATTGCATGATAATATATATATATTCATGTTTTATATA
66 ATATTGTTAATTGCATGATAATATATATATATTCATGTTTTATATA
* *
7323941 ATTTTTACATAACTTTTATAATATTTAATTGCCTACTCTTATTTTTATATTTATTTGCATGCCTT
1 ATTTTTACATAAATTTTATAATATTGAATTGCCTACTCTTATTTTTATATTTATTTGCATGCCTT
7324006 ATATTGTTAATTGCATGATAATATATATATAT
66 ATATTGTTAATTGCATGATAATATATATATAT
7324038 ATATTTAATT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (111 bp):
ATTTTTACATAAATTTTATAATATTGAATTGCCTACTCTTATTTTTATATTTATTTGCATGCCTT
ATATTGTTAATTGCATGATAATATATATATATTCATGTTTTATATA
Found at i:7324059 original size:51 final size:51
Alignment explanation
Indices: 7323986--7324082 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
7323976 CTCTTATTTT
* *
7323986 TATATTTATTTGCATGCCTTATAT-TGTTAATTGCATGATAATATATATATA
1 TATATTTAATTGCATGACTTATATAT-TTAATTGCATGATAATATATATATA
* *
7324037 TATATTTAATTGCATGATTTATATATTTAATTGCATGATCATATAT
1 TATATTTAATTGCATGACTTATATATTTAATTGCATGATAATATAT
7324083 TTAATTGCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.49
Consensus pattern (51 bp):
TATATTTAATTGCATGACTTATATATTTAATTGCATGATAATATATATATA
Found at i:7324061 original size:21 final size:20
Alignment explanation
Indices: 7324035--7324175 Score: 133
Period size: 21 Copynumber: 6.9 Consensus size: 20
7324025 AATATATATA
7324035 TATATATTTAATTGCATGATT
1 TATATATTTAATTGCATGA-T
7324056 TATATATTTAATTGCATGAT
1 TATATATTTAATTGCATGAT
*
7324076 CATATATTTAATTGCATG-T
1 TATATATTTAATTGCATGAT
* * *
7324095 TTTACATTGTTACTTGCATGAT
1 TATATA-T-TTAATTGCATGAT
* *
7324117 TAGATATTTAATGGCATG-T
1 TATATATTTAATTGCATGAT
* *
7324136 TTTACATTGTTAATTGCATGAT
1 TATATA-T-TTAATTGCATGAT
* *
7324158 TAGATATTTAATTACATG
1 TATATATTTAATTGCATG
7324176 TTCATTTGCA
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
19 8 0.08
20 39 0.41
21 41 0.43
22 8 0.08
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (20 bp):
TATATATTTAATTGCATGAT
Found at i:7324081 original size:47 final size:47
Alignment explanation
Indices: 7323955--7324082 Score: 107
Period size: 51 Copynumber: 2.6 Consensus size: 47
7323945 TTACATAACT
* * * * * *
7323955 TTTATAATATTTAATTGCCT-ACTCTTATTTTTATATTTATTTGCATGC
1 TTTAT-ATATTTAATTGCATGA-TCATATATATATATTTAATTGCATGA
* *
7324003 CTTATAT-TGTTAATTGCATGATAATATATATATATATATTTAATTGCATGA
1 TTTATATAT-TTAATTGCATG---AT-CATATATATATATTTAATTGCATGA
7324054 TTTATATATTTAATTGCATGATCATATAT
1 TTTATATATTTAATTGCATGATCATATAT
7324083 TTAATTGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
46 1 0.02
47 17 0.27
48 6 0.10
50 1 0.02
51 37 0.59
52 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.08, T:0.52
Consensus pattern (47 bp):
TTTATATATTTAATTGCATGATCATATATATATATTTAATTGCATGA
Found at i:7324093 original size:41 final size:41
Alignment explanation
Indices: 7324038--7324177 Score: 201
Period size: 41 Copynumber: 3.4 Consensus size: 41
7324028 ATATATATAT
* * * *
7324038 ATATTTAATTGCATGATTTATATAT-TTAATTGCATGATCAT
1 ATATTTAATTGCATGTTTTACAT-TGTTAATTGCATGATTAG
*
7324079 ATATTTAATTGCATGTTTTACATTGTTACTTGCATGATTAG
1 ATATTTAATTGCATGTTTTACATTGTTAATTGCATGATTAG
*
7324120 ATATTTAATGGCATGTTTTACATTGTTAATTGCATGATTAG
1 ATATTTAATTGCATGTTTTACATTGTTAATTGCATGATTAG
*
7324161 ATATTTAATTACATGTT
1 ATATTTAATTGCATGTT
7324178 CATTTGCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 1 0.01
41 88 0.99
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.49
Consensus pattern (41 bp):
ATATTTAATTGCATGTTTTACATTGTTAATTGCATGATTAG
Found at i:7324194 original size:28 final size:28
Alignment explanation
Indices: 7324162--7324245 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
7324152 CATGATTAGA
*
7324162 TATTTAATTACATGTTCATTTGCATGAT
1 TATTTAATTATATGTTCATTTGCATGAT
* * * *
7324190 TATTTATTTATTTGTACGA-TTGTATGAT
1 TATTTAATTATATGTTC-ATTTGCATGAT
7324218 TA-TTAA-TATAT-TT-ATTTGCATGAT
1 TATTTAATTATATGTTCATTTGCATGAT
7324242 TATT
1 TATT
7324246 ATTAGTATTG
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
23 1 0.02
24 10 0.23
25 2 0.05
26 4 0.09
27 3 0.07
28 23 0.52
29 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.55
Consensus pattern (28 bp):
TATTTAATTATATGTTCATTTGCATGAT
Found at i:7324273 original size:19 final size:20
Alignment explanation
Indices: 7324219--7324293 Score: 66
Period size: 19 Copynumber: 3.8 Consensus size: 20
7324209 TTGTATGATT
*
7324219 ATTAATATATTTATTTGCATG
1 ATTATTATATTTA-TTGCATG
*
7324240 ATTATTAT-TAGTATTGCATG
1 ATTATTATAT-TTATTGCATG
*
7324260 ATT-TTATATTTATTACATG
1 ATTATTATATTTATTGCATG
*
7324279 A-TATGATATTATATT
1 ATTATTATATT-TATT
7324294 AATTTTAAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
18 1 0.02
19 19 0.42
20 16 0.36
21 9 0.20
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (20 bp):
ATTATTATATTTATTGCATG
Found at i:7324273 original size:52 final size:51
Alignment explanation
Indices: 7324148--7324274 Score: 116
Period size: 52 Copynumber: 2.5 Consensus size: 51
7324138 TACATTGTTA
* *
7324148 ATTGCATGATTAGATATTTAATT-ACATGTTCATTTGCATGATTATTTATTT
1 ATTGCATGATTATATATTT-ATTAACATATTCATTTGCATGATTATTTATTT
* * * * *
7324199 ATTTGTACGATTGTATGA-TTATTAATATATTTATTTGCATGATTA-TTATTAGT
1 A-TTGCATGATTATAT-ATTTATTAACATATTCATTTGCATGATTATTTATT--T
*
7324252 ATTGCATGATTTTATATTTATTA
1 ATTGCATGATTATATATTTATTA
7324275 CATGATATGA
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
51 10 0.17
52 47 0.78
53 3 0.05
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.53
Consensus pattern (51 bp):
ATTGCATGATTATATATTTATTAACATATTCATTTGCATGATTATTTATTT
Found at i:7327634 original size:368 final size:368
Alignment explanation
Indices: 7326956--7327634 Score: 914
Period size: 368 Copynumber: 1.8 Consensus size: 368
7326946 GGTGCATTTT
* *
7326956 CCATTGAATGTATTTGATAGCCTTTCACCCAAAATGTGACACATAGCCCATCCAATCACTTCCCT
1 CCATTGAATGTATTTAACAGCCTTTCACCCAAAATGTGACACATAGCCCATCCAATCACTTCCCT
** ****
7327021 AAAAAACACAGGTGCATACAACACATTACCCTCATTAGATGCATCCTGACTATGTGCACTCCACA
66 AAAAAACACAGGTG-ATACAACACATTACCCTCATTAGACACATCCTGACTACACACACTCCACA
* *
7327086 GACAAGCATAAAAAACTTTTTACAAAATTTTTATAAGTCCCTACCAATTCTCAAACTTGCCTAAA
130 GACAAGCACAAAAAACTTTTTACAAAATTTTTATAAGTCCCCACCAATTCTCAAACTTGCCTAAA
** * * * * * *
7327151 GATAGTCACTGCTTTCCAACATGACACGTCAACAATAAAGCTCACTAAAAACATTTGCCTTTCTC
195 GATAACCACTACTTCCCAACATGACACGTCAACAATAAAGCTCACCAAAAACAGTTGCCCTTCCC
* **
7327216 ACAAGGACACTCTAACACAATTACTTGCCAAACGCGCTCATCTCATCCCCATAGGACATGTCATC
260 ACAAGGACACTCTAACACAACTACTTGCCAAACAAGCTCATCTCATCCCCATAGGACATGTCATC
7327281 ACTAAATCAATAGCCATAAAAGTGGTGTATTTTGAAAAATGCAC
325 ACTAAATCAATAGCCATAAAAGTGGTGTATTTTGAAAAATGCAC
* ** * *
7327325 CCATTGAATGTATTTAACAGCCTTTCACCCAAAATGTGACACGTAGCTTATCCAGTCGCTTCCCT
1 CCATTGAATGTATTTAACAGCCTTTCACCCAAAATGTGACACATAGCCCATCCAATCACTTCCCT
* * * *
7327390 AAAAAACACAGGCTTG-TATAACACATTGCCC-CATTAGACACATTCTGACTACACACACTCCAT
66 AAAAAACACAGG--TGATACAACACATTACCCTCATTAGACACATCCTGACTACACACACTCCAC
* * * * *
7327453 AGATAAGCACAAGAAA-TTTTCTAGAAAATTTTTCTAAGTCCCCACCAATTCTTAAACTTGCCTA
129 AGACAAGCACAAAAAACTTTT-TACAAAATTTTTATAAGTCCCCACCAATTCTCAAACTTGCCTA
* * *
7327517 AAGATAACCACTACTTCCCAGCATGACACGTCAATAATAAAGCTCACCAAAAATAGTTGCCCTTC
193 AAGATAACCACTACTTCCCAACATGACACGTCAACAATAAAGCTCACCAAAAACAGTTGCCCTTC
* * * * *
7327582 CCATAAGGGCACTTTAGCACAACTACTTGCCAAACAAGTTCATCTCATCCCCA
258 CCACAAGGACACTCTAACACAACTACTTGCCAAACAAGCTCATCTCATCCCCA
7327635 ACAAAACACA
Statistics
Matches: 264, Mismatches: 43, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
367 4 0.02
368 175 0.66
369 83 0.31
371 2 0.01
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (368 bp):
CCATTGAATGTATTTAACAGCCTTTCACCCAAAATGTGACACATAGCCCATCCAATCACTTCCCT
AAAAAACACAGGTGATACAACACATTACCCTCATTAGACACATCCTGACTACACACACTCCACAG
ACAAGCACAAAAAACTTTTTACAAAATTTTTATAAGTCCCCACCAATTCTCAAACTTGCCTAAAG
ATAACCACTACTTCCCAACATGACACGTCAACAATAAAGCTCACCAAAAACAGTTGCCCTTCCCA
CAAGGACACTCTAACACAACTACTTGCCAAACAAGCTCATCTCATCCCCATAGGACATGTCATCA
CTAAATCAATAGCCATAAAAGTGGTGTATTTTGAAAAATGCAC
Found at i:7328271 original size:122 final size:122
Alignment explanation
Indices: 7328054--7328295 Score: 412
Period size: 122 Copynumber: 2.0 Consensus size: 122
7328044 GCCTACCTAA
* * ** *
7328054 GATCATTAAATGCAATTCTTATCCATTCATGTGGACCTTTCTCGAGTTTCACACAGATATCTTTT
1 GATCATTAAATGCAATTCCTATCCATTCATGTGGACCTTTCTCAAGTCCCACACAGACATCTTTT
* *
7328119 CAACTGTCAATCGTCTTAGTTAGATCATGACCTTTTGTCTTACATTAGAGATAAAGG
66 CAACTGTCAATCGTCTTAGTTAGATCATGACCTTTTGTCTCACACTAGAGATAAAGG
7328176 GATCATTAAATGCAATTCCTATCCATTCATGTGGACCTTTCTCAAGTCCCACACAGACATCTTTT
1 GATCATTAAATGCAATTCCTATCCATTCATGTGGACCTTTCTCAAGTCCCACACAGACATCTTTT
*
7328241 CAACTGTCAATCGTCTTAGTTAGATCATGACCTTTTGTCTCACACTATAGATAAA
66 CAACTGTCAATCGTCTTAGTTAGATCATGACCTTTTGTCTCACACTAGAGATAAA
7328296 AGAAGAACTA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 112 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (122 bp):
GATCATTAAATGCAATTCCTATCCATTCATGTGGACCTTTCTCAAGTCCCACACAGACATCTTTT
CAACTGTCAATCGTCTTAGTTAGATCATGACCTTTTGTCTCACACTAGAGATAAAGG
Found at i:7330030 original size:21 final size:21
Alignment explanation
Indices: 7330001--7330317 Score: 148
Period size: 21 Copynumber: 15.4 Consensus size: 21
7329991 ATCTGGTAAT
* *
7330001 TTTTTATATAATTTTAATAAC
1 TTTTGATATAATTTTGATAAC
*
7330022 TTTTGATATAA-TTTCATAA-
1 TTTTGATATAATTTTGATAAC
*
7330041 TCTTT-ATAATAATTTTAATAACC
1 T-TTTGAT-ATAATTTTGATAA-C
7330064 TTTT-ATATAATTTTGATAGTA-
1 TTTTGATATAATTTTGATA--AC
*
7330085 TTTT-ATAATAA-TTTGGT-A-
1 TTTTGAT-ATAATTTTGATAAC
*
7330103 -TTTGATATAATTTTGACAAC
1 TTTTGATATAATTTTGATAAC
* *
7330123 TTTAGTTATAATTTTGATAA-
1 TTTTGATATAATTTTGATAAC
* * *
7330143 TCTTTGATATAGTTTCGATAAT
1 T-TTTGATATAATTTTGATAAC
* **
7330165 TTTTTATATAA-TTTGCGAAC
1 TTTTGATATAATTTTGATAAC
* *
7330185 TTTTTATATATAATTTTAATAAC
1 -TTTT-GATATAATTTTGATAAC
* * *
7330208 TATTGATATAATTTAGGTAAC
1 TTTTGATATAATTTTGATAAC
*
7330229 TTTT-ATAATAATGTTGATAAC
1 TTTTGAT-ATAATTTTGATAAC
* *
7330250 CTTT-ATAATAACTTTGATAA-
1 TTTTGAT-ATAATTTTGATAAC
* * *
7330270 TATTTTATATAA-TTCGGTAA-
1 T-TTTGATATAATTTTGATAAC
* * *
7330290 TTTTAATATAGTTTTAATAA-
1 TTTTGATATAATTTTGATAAC
7330310 TTTTGATA
1 TTTTGATA
7330318 GCCTTTGCAA
Statistics
Matches: 230, Mismatches: 44, Indels: 45
0.72 0.14 0.14
Matches are distributed among these distances:
17 7 0.03
18 7 0.03
19 12 0.05
20 41 0.18
21 133 0.58
22 22 0.10
23 8 0.03
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (21 bp):
TTTTGATATAATTTTGATAAC
Found at i:7330054 original size:41 final size:42
Alignment explanation
Indices: 7330002--7330098 Score: 130
Period size: 41 Copynumber: 2.3 Consensus size: 42
7329992 TCTGGTAATT
7330002 TTTTAT-ATAATTTTAATAA-CTTTTGATATAA-TTTCATA-A
1 TTTTATAATAATTTTAATAACCTTTT-ATATAATTTTCATAGA
*
7330041 TCTTTATAATAATTTTAATAACCTTTTATATAATTTTGATAGTA
1 T-TTTATAATAATTTTAATAACCTTTTATATAATTTTCATAG-A
7330085 TTTTATAATAATTT
1 TTTTATAATAATTT
7330099 GGTATTTGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
39 1 0.02
40 5 0.10
41 19 0.37
42 11 0.22
43 13 0.25
44 2 0.04
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (42 bp):
TTTTATAATAATTTTAATAACCTTTTATATAATTTTCATAGA
Found at i:7330061 original size:12 final size:11
Alignment explanation
Indices: 7330002--7330098 Score: 52
Period size: 9 Copynumber: 9.3 Consensus size: 11
7329992 TCTGGTAATT
7330002 TTTTAT-ATAA
1 TTTTATAATAA
7330012 -TTT-TAATAA
1 TTTTATAATAA
7330021 CTTTTGAT-ATAA
1 -TTTT-ATAATAA
*
7330033 TTTCATAAT--
1 TTTTATAATAA
*
7330042 CTTTATAATAA
1 TTTTATAATAA
7330053 -TTT-TAATAA
1 TTTTATAATAA
7330062 CCTTTTAT-ATAA
1 --TTTTATAATAA
*
7330074 TTTTGATAGT-A
1 TTTT-ATAATAA
7330085 TTTTATAATAA
1 TTTTATAATAA
7330096 TTT
1 TTT
7330099 GGTATTTGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 29
0.66 0.05 0.29
Matches are distributed among these distances:
8 1 0.01
9 20 0.30
10 13 0.19
11 19 0.28
12 12 0.18
13 2 0.03
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (11 bp):
TTTTATAATAA
Found at i:7330114 original size:17 final size:18
Alignment explanation
Indices: 7330082--7330115 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7330072 AATTTTGATA
*
7330082 GTATTTTATAATAATTTG
1 GTATTTGATAATAATTTG
7330100 GTATTTGAT-ATAATTT
1 GTATTTGATAATAATTT
7330116 TGACAACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (18 bp):
GTATTTGATAATAATTTG
Found at i:7330153 original size:81 final size:79
Alignment explanation
Indices: 7330023--7330179 Score: 190
Period size: 81 Copynumber: 2.0 Consensus size: 79
7330013 TTTAATAACT
* * * *
7330023 TTTGATATAATTTCATAATCTTTATAATAATTTTAATAACCTTTTATATAATTTTGATAGTATTT
1 TTTGATATAATTTCACAATCTTTATAATAATTTTAATAACCTTTGATATAATTTCGATAATATTT
7330088 TATAATAATTTGGTA
66 TAT-ATAATTTGGTA
* * * * * *
7330103 TTTGATATAATTTTGACAA-CTTTAGTTATAATTTTGATAATCTTTGATATAGTTTCGATAATTT
1 TTTGATATAA-TTTCACAATCTTTA-TAATAATTTTAATAACCTTTGATATAATTTCGATAATAT
7330167 TTTATATAATTTG
64 TTTATATAATTTG
7330180 CGAACTTTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 23 0.35
81 42 0.65
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (79 bp):
TTTGATATAATTTCACAATCTTTATAATAATTTTAATAACCTTTGATATAATTTCGATAATATTT
TATATAATTTGGTA
Found at i:7330390 original size:23 final size:24
Alignment explanation
Indices: 7330347--7330395 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
7330337 TAAGTTTGAT
*
7330347 ATAATTTTGATAACCTATGAT-TA
1 ATAATTTGGATAACCTATGATATA
* *
7330370 ATAATTTGGATAACTTTTGATATA
1 ATAATTTGGATAACCTATGATATA
7330394 AT
1 AT
7330396 TATGGCAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (24 bp):
ATAATTTGGATAACCTATGATATA
Found at i:7330474 original size:21 final size:20
Alignment explanation
Indices: 7330441--7330488 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
7330431 AGTGAAATCA
*
7330441 AAATTATTAAAATAGTTATC-
1 AAATTATTAAAATA-TTACCT
*
7330461 AAATTATATCAAATATTACCT
1 AAATTAT-TAAAATATTACCT
7330482 AAATTAT
1 AAATTAT
7330489 CGCAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATTATTAAAATATTACCT
Found at i:7330528 original size:21 final size:21
Alignment explanation
Indices: 7330461--7330581 Score: 68
Period size: 21 Copynumber: 5.7 Consensus size: 21
7330451 AATAGTTATC
* * *
7330461 AAATTATATCAAATATTACCT
1 AAATTATATCAAAAATTAACA
**
7330482 AAATTATCGCAAAAATT-ACTA
1 AAATTATATCAAAAATTAAC-A
* *
7330503 TAATTATATCAAAGATTAACA
1 AAATTATATCAAAAATTAACA
* *
7330524 AAATTA-ATAAAAAAAGTTATCA
1 AAATTATAT-CAAAAA-TTAACA
* * *
7330546 AAAGTATTTCAAAGATT-ACTA
1 AAATTATATCAAAAATTAAC-A
7330567 AAATCTATATCAAAA
1 AAAT-TATATCAAAA
7330582 GTTATCATAT
Statistics
Matches: 72, Mismatches: 21, Indels: 13
0.68 0.20 0.12
Matches are distributed among these distances:
20 4 0.06
21 43 0.60
22 24 0.33
23 1 0.01
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.31
Consensus pattern (21 bp):
AAATTATATCAAAAATTAACA
Found at i:7330612 original size:21 final size:21
Alignment explanation
Indices: 7330588--7330731 Score: 64
Period size: 21 Copynumber: 6.9 Consensus size: 21
7330578 AAAAGTTATC
7330588 ATATCAAAGATTATTCAAATT
1 ATATCAAAGATTATTCAAATT
* ** *
7330609 ATATTAAAGGGTA-TCAAAACT
1 ATATCAAAGATTATTC-AAATT
* * * *
7330630 ATATAAAAGGTT-TCCAAAATA
1 ATATCAAAGATTATTC-AAATT
* * *
7330651 ATATTAAATG-TTACTAAAATT
1 ATATCAAA-GATTATTCAAATT
* * * *
7330672 ATATAAAAAATTACTAAAATT
1 ATATCAAAGATTATTCAAATT
* *
7330693 ATATCAAA-ATTATTAAAATA
1 ATATCAAAGATTATTCAAATT
7330713 ATATCAAA-ATTATTGCAAA
1 ATATCAAAGATTATT-CAAA
7330732 AGGCTATTGA
Statistics
Matches: 97, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
20 26 0.27
21 70 0.72
22 1 0.01
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.34
Consensus pattern (21 bp):
ATATCAAAGATTATTCAAATT
Found at i:7330624 original size:36 final size:37
Alignment explanation
Indices: 7330554--7330624 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
7330544 CAAAAGTATT
*
7330554 TCAAAGATTACTAAAATCTATATCAAAAGTTATCATA
1 TCAAAGATTACTAAAATCTATATCAAAAGGTATCATA
* * * *
7330591 TCAAAGATTATTCAAAT-TATATTAAAGGGTATCA
1 TCAAAGATTACTAAAATCTATATCAAAAGGTATCA
7330625 AAACTATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 14 0.48
37 15 0.52
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.34
Consensus pattern (37 bp):
TCAAAGATTACTAAAATCTATATCAAAAGGTATCATA
Found at i:7330726 original size:20 final size:20
Alignment explanation
Indices: 7330645--7330724 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
7330635 AAAGGTTTCC
* *
7330645 AAAATAATATTAAATGTTACT
1 AAAATAATATCAAA-ATTACT
* *
7330666 AAAATTATATAAAAAATTACT
1 AAAATAATAT-CAAAATTACT
* *
7330687 AAAATTATATCAAAATTATT
1 AAAATAATATCAAAATTACT
7330707 AAAATAATATCAAAATTA
1 AAAATAATATCAAAATTA
7330725 TTGCAAAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
20 25 0.48
21 24 0.46
22 3 0.06
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (20 bp):
AAAATAATATCAAAATTACT
Found at i:7330732 original size:11 final size:11
Alignment explanation
Indices: 7330666--7330725 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 11
7330656 AAATGTTACT
*
7330666 AAAATTATATA
1 AAAATTATATC
*
7330677 AAAAAT-TA-C
1 AAAATTATATC
7330686 TAAAATTATATC
1 -AAAATTATATC
7330698 AAAATTAT-T-
1 AAAATTATATC
*
7330707 AAAATAATATC
1 AAAATTATATC
7330718 AAAATTAT
1 AAAATTAT
7330726 TGCAAAAGGC
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
9 7 0.18
10 9 0.23
11 22 0.56
12 1 0.03
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATTATATC
Found at i:7330825 original size:21 final size:21
Alignment explanation
Indices: 7330766--7330826 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
7330756 TATCGAAACC
*
7330766 ATATCAAAGGTTA-CAAAATT
1 ATATCAAATGTTATCAAAATT
*
7330786 ATATAAAAAT-TT-TCTAAAATT
1 ATAT-CAAATGTTATC-AAAATT
7330807 ATATCAAATGTTATCAAAAT
1 ATATCAAATGTTATCAAAAT
7330827 ATCAAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 11 0.33
21 20 0.61
22 2 0.06
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATCAAATGTTATCAAAATT
Found at i:7330934 original size:10 final size:11
Alignment explanation
Indices: 7330868--7330943 Score: 56
Period size: 9 Copynumber: 7.2 Consensus size: 11
7330858 TGGCAAAGAT
*
7330868 TATCAAAATTGT
1 TATCAAAATT-A
7330880 TAT-AAAATTA
1 TATCAAAATTA
7330890 T-T-AAAATTA
1 TATCAAAATTA
*
7330899 TATAAAAAAATTA
1 TAT--CAAAATTA
7330912 T-T-AAAATTA
1 TATCAAAATTA
*
7330921 TATCATAATT-
1 TATCAAAATTA
7330931 TATCAAAATTA
1 TATCAAAATTA
7330942 TA
1 TA
7330944 ACAATCACCA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
9 17 0.31
10 12 0.22
11 13 0.24
12 4 0.07
13 8 0.15
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (11 bp):
TATCAAAATTA
Found at i:7332724 original size:2 final size:2
Alignment explanation
Indices: 7332717--7332757 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7332707 TAAGATTTGA
7332717 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7332758 TCTGTTTATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7336960 original size:20 final size:18
Alignment explanation
Indices: 7336926--7336962 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
7336916 TAAAATGATC
7336926 ATTAAAAATATTTAAAAA
1 ATTAAAAATATTTAAAAA
7336944 ATTAATAAATAATTTAAAA
1 ATTAA-AAAT-ATTTAAAA
7336963 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
ATTAAAAATATTTAAAAA
Found at i:7337014 original size:36 final size:34
Alignment explanation
Indices: 7336969--7337086 Score: 89
Period size: 36 Copynumber: 3.4 Consensus size: 34
7336959 AAAATTAATA
*
7336969 ATAAAAATAAAATAAATTTATTTATTAACTTATTAT
1 ATAATAATAAAATAAATTTATTTATTAA--TATTAT
* * *
7337005 ATGATAATAAAACT-TATTTATTTATTTATATTAT
1 ATAATAATAAAA-TAAATTTATTTATTAATATTAT
*
7337039 ATAAT-A-AAAATCAATATTTATTTATATATTTATTAT
1 ATAATAATAAAAT-AA-ATTTATTTAT-TA-ATATTAT
* *
7337075 CTAACAATAAAA
1 ATAATAATAAAA
7337087 AATAAAAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
31 1 0.02
32 4 0.06
33 1 0.02
34 20 0.31
35 1 0.02
36 31 0.48
37 2 0.03
38 4 0.06
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (34 bp):
ATAATAATAAAATAAATTTATTTATTAATATTAT
Found at i:7337057 original size:34 final size:34
Alignment explanation
Indices: 7336962--7337071 Score: 91
Period size: 34 Copynumber: 3.1 Consensus size: 34
7336952 ATAATTTAAA
* *
7336962 ATTA-ATAATAAAAATAAAATAAATTTATTTATTAACTT
1 ATTATATAATAAAAAT-CAAT--ATTTATTTATTTA--T
* * *
7337000 ATTATATGATAATAAAAC-TTATTTATTTATTTAT
1 ATTATATAATAA-AAATCAATATTTATTTATTTAT
*
7337034 ATTATATAATAAAAATCAATATTTATTTATATAT
1 ATTATATAATAAAAATCAATATTTATTTATTTAT
7337068 -TTAT
1 ATTAT
7337072 TATCTAACAA
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
33 8 0.13
34 26 0.43
36 12 0.20
38 5 0.08
39 6 0.10
40 3 0.05
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (34 bp):
ATTATATAATAAAAATCAATATTTATTTATTTAT
Found at i:7338030 original size:13 final size:13
Alignment explanation
Indices: 7337998--7338036 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7337988 TAACGAAATT
* *
7337998 TTTTAATATATTAG
1 TTTTAAT-TTTTAA
7338012 TTTTAATTTTTAA
1 TTTTAATTTTTAA
7338025 TTTTAATTTTTA
1 TTTTAATTTTTA
7338037 TTTAATCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:7343455 original size:25 final size:24
Alignment explanation
Indices: 7343401--7343455 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 24
7343391 TTATTACTAT
7343401 TTTTTTACACATTTTTTTGTTTTA
1 TTTTTTACACATTTTTTTGTTTTA
7343425 TTTTTTACATC-TTTTTTT-TCTTTA
1 TTTTTTACA-CATTTTTTTGT-TTTA
7343449 TTCTTTT
1 TT-TTTT
7343456 CTTCACCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 1 0.04
24 22 0.79
25 5 0.18
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTTTTACACATTTTTTTGTTTTA
Found at i:7347974 original size:16 final size:15
Alignment explanation
Indices: 7347955--7347988 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7347945 AGAAGTTGTG
*
7347955 AAAACAAGAAGAACAA
1 AAAAAAAGAAGAA-AA
7347971 AAAAAAAGAAGAAAA
1 AAAAAAAGAAGAAAA
7347986 AAA
1 AAA
7347989 TATCGATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAGAAAA
Found at i:7348458 original size:12 final size:12
Alignment explanation
Indices: 7348420--7348463 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
7348410 TGGAAACAAT
7348420 AAAAAG-AAGAA
1 AAAAAGAAAGAA
* *
7348431 AAAAATAAAAAA
1 AAAAAGAAAGAA
*
7348443 AAAAAGAAAGAG
1 AAAAAGAAAGAA
7348455 AAAAAGAAA
1 AAAAAGAAA
7348464 TGATTAAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 5 0.19
12 22 0.81
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:7349789 original size:36 final size:35
Alignment explanation
Indices: 7349749--7349883 Score: 114
Period size: 36 Copynumber: 4.1 Consensus size: 35
7349739 GTATTTTTTG
* *
7349749 AAAAGATATTTTGCATTTCATGTGCATCATTTTAAA
1 AAAAGACATTTT-CATTTCATGTGCATCATTTAAAA
7349785 AAAAGACA---T--TTTCA--T-CA---TTTAAAA
1 AAAAGACATTTTCATTTCATGTGCATCATTTAAAA
*
7349809 AAAAGACATTTGCATTTCATGTGCATCATTTTAAGAA
1 AAAAGACATTTTCATTTCATGTGCATCA-TTTAA-AA
* *
7349846 AAAA-ACATTTTCATTTTATATGCATCATTTAAAA
1 AAAAGACATTTTCATTTCATGTGCATCATTTAAAA
7349880 AAAA
1 AAAA
7349884 CATTTGCATA
Statistics
Matches: 80, Mismatches: 6, Indels: 28
0.70 0.05 0.25
Matches are distributed among these distances:
24 14 0.17
27 2 0.03
28 1 0.01
29 5 0.06
30 5 0.06
31 1 0.01
32 2 0.03
33 1 0.01
34 6 0.08
35 5 0.06
36 32 0.40
37 6 0.08
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (35 bp):
AAAAGACATTTTCATTTCATGTGCATCATTTAAAA
Found at i:7349804 original size:24 final size:24
Alignment explanation
Indices: 7349773--7349819 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7349763 ATTTCATGTG
*
7349773 CATCATTTTAAAAAAAGACATTTT
1 CATCATTTAAAAAAAAGACATTTT
7349797 CATCATTTAAAAAAAAGACATTT
1 CATCATTTAAAAAAAAGACATTT
7349820 GCATTTCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (24 bp):
CATCATTTAAAAAAAAGACATTTT
Found at i:7349836 original size:35 final size:34
Alignment explanation
Indices: 7349797--7349897 Score: 132
Period size: 36 Copynumber: 2.9 Consensus size: 34
7349787 AAGACATTTT
*
7349797 CATCATTTAAAAAAAAGACATTTGCATTTCATGTG
1 CATCATTTAAAAAAAA-ACATTTGCATTTCATATG
* *
7349832 CATCATTTTAAGAAAAAAACATTTTCATTTTATATG
1 CATCA-TTTAA-AAAAAAACATTTGCATTTCATATG
*
7349868 CATCATTT-AAAAAAAACATTTGCATATCAT
1 CATCATTTAAAAAAAAACATTTGCATTTCAT
7349898 TTTAAGAGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
33 18 0.31
34 1 0.02
35 8 0.14
36 25 0.43
37 6 0.10
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.37
Consensus pattern (34 bp):
CATCATTTAAAAAAAAACATTTGCATTTCATATG
Found at i:7349897 original size:24 final size:26
Alignment explanation
Indices: 7349869--7349918 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7349859 TTTTATATGC
7349869 ATCA-TTTAA-AAAAAACATTTGCAT
1 ATCATTTTAAGAAAAAACATTTGCAT
* *
7349893 ATCATTTTAAGAGAAGACATTTGCAT
1 ATCATTTTAAGAAAAAACATTTGCAT
7349919 CATAATGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 5 0.23
26 13 0.59
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (26 bp):
ATCATTTTAAGAAAAAACATTTGCAT
Found at i:7349920 original size:24 final size:23
Alignment explanation
Indices: 7349866--7349921 Score: 60
Period size: 26 Copynumber: 2.3 Consensus size: 23
7349856 TCATTTTATA
7349866 TGCATCA-TTTAAAAAAAACATT
1 TGCATCATTTTAAAAAAAACATT
* *
7349888 TGCATATCATTTTAAGAGAAGACATT
1 TGC--ATCATTTTAA-AAAAAACATT
7349914 TGCATCAT
1 TGCATCAT
7349922 AATGGTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 3 0.11
24 9 0.32
25 5 0.18
26 11 0.39
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (23 bp):
TGCATCATTTTAAAAAAAACATT
Found at i:7350812 original size:99 final size:99
Alignment explanation
Indices: 7350632--7350847 Score: 294
Period size: 99 Copynumber: 2.2 Consensus size: 99
7350622 GAGTGATTAA
* * * *
7350632 AAGTCATTTGCATCTTCTCGATGGTGATATCCAAGTGTTAAAGTTTGAATTGTATTTTCTCAATA
1 AAGTCATTTGCATCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTATTTTCTCAATA
* *
7350697 ATGATATTCGAGTTTTCTTT-AGTGGTGATATCCG
66 ATGATATTCGAATTTTCTTTGA-CGGTGATATCCG
* *
7350731 AAGTCATTTGCATCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTATTTTTTTCAGT
1 AAGTCATTTGCATCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTA-TTTTCTCAAT
** *
7350796 TGTGATATTC-AATTTTCTTTGACGGTGATATCTG
65 AATGATATTCGAATTTTCTTTGACGGTGATATCCG
7350830 AAGTCATTTGCAT-TTTTT
1 AAGTCATTTGCATCTTTTT
7350848 CAGTAACGAT
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
98 5 0.05
99 82 0.79
100 17 0.16
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (99 bp):
AAGTCATTTGCATCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTATTTTCTCAATA
ATGATATTCGAATTTTCTTTGACGGTGATATCCG
Found at i:7350945 original size:241 final size:239
Alignment explanation
Indices: 7350504--7351032 Score: 652
Period size: 241 Copynumber: 2.2 Consensus size: 239
7350494 TATTCGAGTT
* * * *
7350504 TCTTTTTATGGCGATATCCGAATGTTAAAGCTTGAATTACATTTTCTTGACATTGATATTCGAGT
1 TCTTTTTATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTCACATTGATATTCAAGT
* * * *
7350569 TTCCTTCGATGATGATCTTCGAAGTCATTTGTATCTTCTCAGTGATGATATTCGAGTGATTAAAA
66 TTCCTTCGATGATGATCTTCGAAGTCATTTGCATCTTCTCAGTAACGATATCCGAGTGATTAAAA
* *
7350634 GTCATTTGCATCTTCTCGATGGTGATATCCAAGTGTTAAAGTTTGAATTGTATTTTCTCAATAAT
131 GTCATTTGCATCTTCTCGATAGTGATATCCAAGTGTTAAAGTTTGAATTGCATTTTCTCAATAAT
* * *
7350699 GATATTCGAGTTTTCTTTAG-TGGTGATATCCGAAGTCATTTGCA
196 GATATTAGAG-TTTCCTTAGATGATGATATCCGAAGTCATTTGCA
* ** **
7350743 TCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTATTTTTTTCAGTTGTGATATTCAA
1 TCTTTTT-ATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTCACAT-TGATATTCAA
* * * * *
7350808 TTTTCTTTGACGGTGAT-ATC-T-GAAGTCATTTGCATTTTTTCAGTAACGATATCCGAGTGATT
64 GTTTCCTT--CGATGATGATCTTCGAAGTCATTTGCATCTTCTCAGTAACGATATCCGAGTGATT
* *** *
7350870 AAAAGTCAATTTGCATCTTCTTGATAGTGATATTTGAGTGTTAAAGTTTGAATTGCATTTTCTTA
127 AAAAGTC-ATTTGCATCTTCTCGATAGTGATATCCAAGTGTTAAAGTTTGAATTGCATTTTCTCA
** *
7350935 ATGGTGATATTAGAGTTTCCTTCGATGATGATATCCGAAGTCATTTGCA
191 ATAATGATATTAGAGTTTCCTTAGATGATGATATCCGAAGTCATTTGCA
** **
7350984 TCTTATCAATGGTGATATTTGAATGTTAAAGCTTGAATTACATTTTTTT
1 TCTT-TTTATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTT
7351033 TATTGTGGTT
Statistics
Matches: 245, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
239 7 0.03
240 87 0.36
241 141 0.58
242 4 0.02
243 6 0.02
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.43
Consensus pattern (239 bp):
TCTTTTTATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTCACATTGATATTCAAGT
TTCCTTCGATGATGATCTTCGAAGTCATTTGCATCTTCTCAGTAACGATATCCGAGTGATTAAAA
GTCATTTGCATCTTCTCGATAGTGATATCCAAGTGTTAAAGTTTGAATTGCATTTTCTCAATAAT
GATATTAGAGTTTCCTTAGATGATGATATCCGAAGTCATTTGCA
Found at i:7351001 original size:99 final size:99
Alignment explanation
Indices: 7350872--7351308 Score: 393
Period size: 99 Copynumber: 4.4 Consensus size: 99
7350862 GAGTGATTAA
* * ** * * * * *
7350872 AAGTCAATTTGCATCTTCTTGATAGTGATATTTGAGTGTTAAAGTTTGAATTGCATTTTCTTAAT
1 AAGTC-ATTTGCATCTTCTCGATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTTAT
* **
7350937 GGTGATATTAGAGTTTCCTTCGATGATGATATCCG
65 GGTGATATTAGAGTTTTCTTCGATGGCGATATCCG
* * ** *
7350972 AAGTCATTTGCATCTTATCAATGGTGATATTTGAATGTTAAAGCTTGAATTACATTTTTTTTATT
1 AAGTCATTTGCATCTTCTCGATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTTATG
* * ** *
7351037 GTG--GTTCGAG-TTTCTTTTATTGGCGATATCTG
66 GTGATATTAGAGTTTTCTTCGA-TGGCGATATCCG
* * * * ** *
7351069 AAGTCATTTGTATCTTTTCGATTGTGATATCCGAGTGTTAAAGCTCAAATTACATTTTTTTTATA
1 AAGTCATTTGCATCTTCTCGATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTTATG
* * *
7351134 GTGATATTCA-AGTTTTCTTTGGTGGCAATATCCG
66 GTGATATT-AGAGTTTTCTTCGATGGCGATATCCG
* * * *
7351168 AAGTCATTTGCATATTTTC-AGTGATGATATCCGAATGTTAAGGCTTGAATTACA-TTTTTTTAT
1 AAGTCATTTGCATCTTCTCGA-TGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTTAT
* * * *
7351231 GGTGATATTCGAGTTTTTTTCTG-TGGTGATATCCC
65 GGTGATATTAGAGTTTTCTTC-GATGGCGATATCCG
* *
7351266 AAGTCATTTGCATCTTCTTGATGGTGATATCCGAGTGATTAAA
1 AAGTCATTTGCATCTTCTCGATGGTGATATCCGAATG-TTAAA
7351309 AGTCATTTAT
Statistics
Matches: 272, Mismatches: 55, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
96 6 0.02
97 72 0.26
98 65 0.24
99 117 0.43
100 12 0.04
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (99 bp):
AAGTCATTTGCATCTTCTCGATGGTGATATCCGAATGTTAAAGCTTGAATTACATTTTTTTTATG
GTGATATTAGAGTTTTCTTCGATGGCGATATCCG
Found at i:7351001 original size:142 final size:141
Alignment explanation
Indices: 7350731--7350993 Score: 314
Period size: 142 Copynumber: 1.9 Consensus size: 141
7350721 GTGATATCCG
* * * * *
7350731 AAGTCATTTGCATCTTTTTGATGGTGATATCCAAATGTTAAAGCTTGAATTGTATTTTTTTCAGT
1 AAGTCATTTGCATCTTCTTGATAGTGATATCCAAATGTTAAAGCTTGAATTGCATTTTCTTCAAT
* * * * * * * *
7350796 TGTGATATTCAATTTTCTTTGACGGTGATATCTGAAGTCATTTGCATTTTTTCAGTAACGATATC
66 GGTGATATTCAATTTCCTTCGACGATGATATCCGAAGTCATTTGCATCTTATCAATAACGATATC
7350861 CGAGTGATTAA
131 CGAGTGATTAA
*** * *
7350872 AAGTCAATTTGCATCTTCTTGATAGTGATATTTGAGTGTTAAAGTTTGAATTGCATTTTCTT-AA
1 AAGTC-ATTTGCATCTTCTTGATAGTGATATCCAAATGTTAAAGCTTGAATTGCATTTTCTTCAA
*
7350936 TGGTGATATT-AGAGTTTCCTTCGATGATGATATCCGAAGTCATTTGCATCTTATCAAT
65 TGGTGATATTCA-A-TTTCCTTCGACGATGATATCCGAAGTCATTTGCATCTTATCAAT
7350994 GGTGATATTT
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
140 1 0.01
141 16 0.16
142 83 0.83
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (141 bp):
AAGTCATTTGCATCTTCTTGATAGTGATATCCAAATGTTAAAGCTTGAATTGCATTTTCTTCAAT
GGTGATATTCAATTTCCTTCGACGATGATATCCGAAGTCATTTGCATCTTATCAATAACGATATC
CGAGTGATTAA
Found at i:7351337 original size:338 final size:337
Alignment explanation
Indices: 7350983--7351630 Score: 732
Period size: 339 Copynumber: 1.9 Consensus size: 337
7350973 AGTCATTTGC
** * ** * *
7350983 ATCTTATCAATGGTGATATTTGAATGTTAAAGCTTGAATTACATTTTTTTTATTGTG-GTTCGAG
1 ATCTTATCAATGGTGATATCCGAATGTTAAAACTTGAATTACATTTTTTCAATGGTGAATTCGAG
* * * * * * * * * *
7351047 TTTCTTT-TATTGGCGATATCTGAAGTCATTTGTATCTTTTC-GATTGTGATATCCGAGTGTTAA
66 TTT-TTTCGATT-GCAACATCCGAAGTCAGTTGCATCTTCTCAG-TGGTGAAATCCGAATGTTAA
* * * ** *
7351110 AGCTCAAATTACATTTTTTTTATAGTGATATTCAAGTTTTCTTTGGTGGCAATATCCGAAGTCAT
128 AGCTCAAATTACATTTTTTTGATAATGATATTCAAGTTTTCTTTGATAACAATATCCAAAGTCA-
* * ** *
7351175 TTGCATATTTTCAGTGATGATATCCGAA-TGTTAAGGCTTGAATTACATTTTTT-TATGGTGATA
192 TTGCATACTCTCAGTGATGATAT-CGAAGTGTTAAACCTTGAATTACATTTTTTCGATGGTGATA
* * **
7351238 TTCGAGTTTT-TTTCTGTGGTGATATCCCAAGTCATTTGCATCTTCTTGATGGTGATATCCGAGT
256 TTCGAGTTTTCTTT-AGTGGTAATAT-AAAAGTCATTTGCATCTTCTTGATGGTGATATCCGAGT
7351302 GATTAAAAGTCATTTATAT
319 GATTAAAAGTCATTTATAT
* * * *
7351321 ATCTTTTCAGTGGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTTGA
1 ATCTTATCAATGGTGATATCCGAATGTTAAAACTTGAATTACATTTTTTCAATGGTGA-ATTCGA
* *
7351386 GTTTTTTCGATTGTAACATCCGAAGTCAGTTGCATCTTCTCAGTGGTGAAATCTGAATGTTAAAG
65 GTTTTTTCGATTGCAACATCCGAAGTCAGTTGCATCTTCTCAGTGGTGAAATCCGAATGTTAAAG
** * * ** *
7351451 CTTGAATTGCATTTTTTTGATAATGATATTCGAGTTTTCTTTGATAATTATATCTAAAGTCATTG
130 CTCAAATTACATTTTTTTGATAATGATATTCAAGTTTTCTTTGATAACAATATCCAAAGTCATTG
* * * *
7351516 CATCCTCTCGGTGATGATATCTAAGTGTTAAACCTTGAATTATATTTTTTCGATGGTGATATTCG
195 CATACTCTCAGTGATGATATCGAAGTGTTAAACCTTGAATTACATTTTTTCGATGGTGATATTCG
*
7351581 AGTTTTCTTTAGTGGTAATATAAAAGTCATTTGCATCTTCTTGGTGGTGA
260 AGTTTTCTTTAGTGGTAATATAAAAGTCATTTGCATCTTCTTGATGGTGA
7351631 AATCTGAATG
Statistics
Matches: 253, Mismatches: 50, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
337 3 0.01
338 115 0.45
339 120 0.47
340 15 0.06
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (337 bp):
ATCTTATCAATGGTGATATCCGAATGTTAAAACTTGAATTACATTTTTTCAATGGTGAATTCGAG
TTTTTTCGATTGCAACATCCGAAGTCAGTTGCATCTTCTCAGTGGTGAAATCCGAATGTTAAAGC
TCAAATTACATTTTTTTGATAATGATATTCAAGTTTTCTTTGATAACAATATCCAAAGTCATTGC
ATACTCTCAGTGATGATATCGAAGTGTTAAACCTTGAATTACATTTTTTCGATGGTGATATTCGA
GTTTTCTTTAGTGGTAATATAAAAGTCATTTGCATCTTCTTGATGGTGATATCCGAGTGATTAAA
AGTCATTTATAT
Found at i:7351339 original size:437 final size:436
Alignment explanation
Indices: 7350631--7351722 Score: 1220
Period size: 437 Copynumber: 2.5 Consensus size: 436
7350621 CGAGTGATTA
* * * *
7350631 AAAGTCATTTGCATCTTCTCGATGGTGATATCCAAGTGTTAAAGTTTGAATTGTATTTTCTCAAT
1 AAAGTCATTTGCATCTTCTCGATTGTGATATCCAAGTGTTAAAGCTTGAATTATATTTTTTCAAT
* * *
7350696 AATGATATTCGAGTTTTCTTTAGTGGTGATATCCGAAGTCATTTGCATCTTTTTGATGGTGATAT
66 AGTGATATTCGAGTTTTCTTTAGTGGTAATATCCGAAGTCATTTGCATCTTTTAG-TGGTGATAT
* * * *
7350761 CCAAATGTTAAAGCTTGAATTGTATTTTTTTCAGTTGTGATATTC-AATTTTCTTTGACGGTGAT
130 CCGAATGTTAAAGCTTGAATTGTATTTTTTT-A-TAGTGATATTCGAGTTTTCTTTGATGGTGAT
* * * *
7350825 ATCTGAAGTCATTTGCAT-TTTTTCAGTAACGATATCCGAGTGATTAAAAGTCAATTTGCATCTT
193 ATCTAAAGTCATTTGCATCTTCTTGAGTAACGATATCCGAGTGATTAAAAGTCAATTTACATCTT
* ** ** *
7350889 CTTGATAGTGATATTTGAGTGTTAAAGTTTGAATTGCATTTTCTT-AATGGTGATATTAGAGTTT
258 CTTCATAGTGATATCCGAGTGTTAAAACTTGAATTACATTTT-TTCAATGGTGATATTAGAGTTT
* * * * *
7350953 CCTTCGA-TGATGATATCCGAAGTCATTTGCATCTTATCAATGGTGATATTTGAATGTTAAAGCT
322 -CTTCGATTG-TAACATCCGAAGTCAGTTGCATCTTATCAATGGTGAAATCTGAATGTTAAAGCT
* * * **
7351017 TGAATTACATTTTTTT-TATTG-TGGTTCGAG-TTTCTTTTATTGGCGATATCT
385 TGAATTACATTTTTTTATAATGAT-ATTCGAGTTTTCTTTGA-TAACGATATCT
* * * * ** * **
7351068 GAAGTCATTTGTATCTTTTCGATTGTGATATCCGAGTGTTAAAGCTCAAATTACATTTTTTTTAT
1 AAAGTCATTTGCATCTTCTCGATTGTGATATCCAAGTGTTAAAGCTTGAATTATATTTTTTCAAT
* * * * *
7351133 AGTGATATTCAAGTTTTCTTTGGTGGCAATATCCGAAGTCATTTGCATATTTTCAGTGATGATAT
66 AGTGATATTCGAGTTTTCTTTAGTGGTAATATCCGAAGTCATTTGCATCTTTT-AGTGGTGATAT
* ** * *
7351198 CCGAATGTTAAGGCTTGAATTACATTTTTTTATGGTGATATTCGAGTTTTTTTCTG-TGGTGATA
130 CCGAATGTTAAAGCTTGAATTGTATTTTTTTATAGTGATATTCGAGTTTTCTT-TGATGGTGATA
** *** * *
7351262 TCCCAAGTCATTTGCATCTTCTTGA-TGGTGATATCCGAGTGATTAAAAGTCATTTATATATCTT
194 TCTAAAGTCATTTGCATCTTCTTGAGTAACGATATCCGAGTGATTAAAAGTCAATT-TACATCTT
* *
7351326 -TTCAGTGGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTTGAGTTT
258 CTTCA-TAGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTAGAGTTT
* * *
7351390 TTTCGATTGTAACATCCGAAGTCAGTTGCATCTTCTCAGTGGTGAAATCTGAATGTTAAAGCTTG
322 CTTCGATTGTAACATCCGAAGTCAGTTGCATCTTATCAATGGTGAAATCTGAATGTTAAAGCTTG
* **
7351455 AATTGCATTTTTTTGATAATGATATTCGAGTTTTCTTTGATAATTATATCT
387 AATTACATTTTTTT-ATAATGATATTCGAGTTTTCTTTGATAACGATATCT
* * * * *
7351506 AAAGTCA-TTGCATCCTCTCG-GTGATGATATCTAAGTGTTAAACCTTGAATTATATTTTTTCGA
1 AAAGTCATTTGCATCTTCTCGATTG-TGATATCCAAGTGTTAAAGCTTGAATTATATTTTTTCAA
* ** * *
7351569 TGGTGATATTCGAGTTTTCTTTAGTGGTAATAT-AAAAGTCATTTGCATCTTCTTGGTGGTGAAA
65 TAGTGATATTCGAGTTTTCTTTAGTGGTAATATCCGAAGTCATTTGCATCTT-TTAGTGGTGATA
* * * **
7351633 TCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTTGATAATGAT
129 TCCGAATGTTAAAGCTTGAATTGTATTTTTT-TATAGTGATATTCGAGTTTTCTTTGATGGTGAT
*
7351698 ATCTAAAGTCATTTGCATCCTCTTG
193 ATCTAAAGTCATTTGCATCTTCTTG
7351723 GTAGTGAAAT
Statistics
Matches: 540, Mismatches: 99, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
435 10 0.02
436 181 0.34
437 316 0.59
438 24 0.04
439 9 0.02
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (436 bp):
AAAGTCATTTGCATCTTCTCGATTGTGATATCCAAGTGTTAAAGCTTGAATTATATTTTTTCAAT
AGTGATATTCGAGTTTTCTTTAGTGGTAATATCCGAAGTCATTTGCATCTTTTAGTGGTGATATC
CGAATGTTAAAGCTTGAATTGTATTTTTTTATAGTGATATTCGAGTTTTCTTTGATGGTGATATC
TAAAGTCATTTGCATCTTCTTGAGTAACGATATCCGAGTGATTAAAAGTCAATTTACATCTTCTT
CATAGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTAGAGTTTCTTC
GATTGTAACATCCGAAGTCAGTTGCATCTTATCAATGGTGAAATCTGAATGTTAAAGCTTGAATT
ACATTTTTTTATAATGATATTCGAGTTTTCTTTGATAACGATATCT
Found at i:7351513 original size:241 final size:240
Alignment explanation
Indices: 7351079--7351519 Score: 555
Period size: 241 Copynumber: 1.8 Consensus size: 240
7351069 AAGTCATTTG
* * **
7351079 TATCTTTTCGATTGTGATATCCGAGTGTTAAAGCTCAAATTACATTTTTTTTATAGTGATATTCA
1 TATCTTTTCGATGGTGATATCCGAGTGTTAAAACTCAAATTACATTTTTTCAATAGTGATATTCA
* * * * * *
7351144 AGTTTTCTTTGGTGGCAATATCCGAAGTCATTTGCATATTTTCAGTGATGATATCCGAATGTTAA
66 AGTTTTCTTCGATGGCAACATCCGAAGTCAGTTGCATATTCTCAGTGATGAAATCCGAATGTTAA
* ** * ** *
7351209 GGCTTGAATTACATTTTTTTATGGTGATATTCGAGTTTTTTTCTGTGGTGATATCCCAAGTCATT
131 AGCTTGAATTACATTTTTTTATAATGATATTCGAGTTTTCTTCTGTAATGATATCCAAAGTCA-T
7351274 TGCATCTTCTTGATGGTGATATCCGAGTGATTAAAAGTCATTTATA
195 TGCATCTTCTTGATGGTGATATCCGAGTGATTAAAAGTCATTTATA
** * *
7351320 TATCTTTTC-AGTGGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTT
1 TATCTTTTCGA-TGGTGATATCCGAGTGTTAAAACTCAAATTACATTTTTTCAATAGTGATATTC
* * * * * *
7351384 GAGTTTT-TTCGATTGTAACATCCGAAGTCAGTTGCATCTTCTCAGTGGTGAAATCTGAATGTTA
65 AAGTTTTCTTCGATGGCAACATCCGAAGTCAGTTGCATATTCTCAGTGATGAAATCCGAATGTTA
* * *
7351448 AAGCTTGAATTGCATTTTTTTGATAATGATATTCGAGTTTTCTT-TGATAATTATATCTAAAGTC
130 AAGCTTGAATTACATTTTTTT-ATAATGATATTCGAGTTTTCTTCTG-TAATGATATCCAAAGTC
7351512 ATTGCATC
193 ATTGCATC
7351520 CTCTCGGTGA
Statistics
Matches: 167, Mismatches: 30, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
240 75 0.45
241 92 0.55
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (240 bp):
TATCTTTTCGATGGTGATATCCGAGTGTTAAAACTCAAATTACATTTTTTCAATAGTGATATTCA
AGTTTTCTTCGATGGCAACATCCGAAGTCAGTTGCATATTCTCAGTGATGAAATCCGAATGTTAA
AGCTTGAATTACATTTTTTTATAATGATATTCGAGTTTTCTTCTGTAATGATATCCAAAGTCATT
GCATCTTCTTGATGGTGATATCCGAGTGATTAAAAGTCATTTATA
Found at i:7351736 original size:99 final size:99
Alignment explanation
Indices: 7351330--7352308 Score: 829
Period size: 98 Copynumber: 10.0 Consensus size: 99
7351320 TATCTTTTCA
* * * * ** * ** * *
7351330 GTGGTGATATCCGAGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTTGAGTTTT-TTC
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
* * * ** * **
7351394 GATTGTAACATCCGAAGTCAGTTGCATCTTCTCA
66 GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* *
7351428 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGCATTTTTTTGATAATGATATTCGAGTTTTCTTT
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
** * * *
7351493 GATAATTATATCTAAAGTCA-TTGCATCCTCTCG
66 GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* * * * **
7351526 GTGATGATATCT-AAGTGTTAAACCTTGAATTATATTTTTTCGATGGTGATATTCGAGTTTTCTT
1 GTGGTGAAATCTGAA-TGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTT
* *
7351590 T-AGTGGTAATAT-AAAAGTCATTTGCATCTTCTTG
65 TGA-TGGTGATATCTAAAGTCATTTGCATCTTCTTG
7351624 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
** *
7351689 GATAATGATATCTAAAGTCATTTGCATCCTCTTG
66 GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* *
7351723 GTAGTGAAATCTGAATGTTAAAGCTTGAATTGCATTTTTTCGATAATGATATTCGAGTTTTCTTT
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
** * *
7351788 GATAATGATATCTAAAGTCATTTGCATCCTCTCG
66 GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* * ** * *
7351822 ATGGT-AATATCT-AAGTGTTAAAGCTTGAATTATATTTTTTCGATGGTGATATTCAAGTTTCCT
1 GTGGTGAA-ATCTGAA-TGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCT
* * *
7351885 TTGGTGGTAATAT-AAAAGTCATTTGCATCTTCTTG
64 TTGATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* * * * ** * * * * *
7351920 GTAGTGATAT-TCGAGTGTTAAAGCTTAAATTACATTTTCTCAACAATGATATTTGAGTTTCCTT
1 GTGGTGAAATCT-GAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTT
* * * *
7351984 CGACGGTGATAT-TCAAGTCATTTACATCTTC-TG
65 TGATGGTGATATCTAAAGTCATTTGCATCTTCTTG
** * * ** ** *
7352017 ACGGTGAAATCTGATTGTTAAAGCTTGAATTGCATTTTTTTAATGGTGATATTCGAG--TTCCTT
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
* * * * * * * *
7352080 CAGTGGCGATATTTGAAGTTATTTGTATCTTTTTA
66 GA-TGGTGATATCTAAAGTCATTTGCATCTTCTTG
* * * *
7352115 GTGGTGATATC-CAAGTGTT-AAGCTTGAATTGTATTTTCTCGATAGTGATATTCGAGTTTTCTT
1 GTGGTGAAATCTGAA-TGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTT
* ** * *
7352178 TCGGTGGCAATATCTAAAGTCATTGGTATCTTCTTG
65 T-GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
* * * * * * *
7352214 GTGATGATATCTAAATGTTAAAGCTTGACTTGTATTTTTTTGATGATGATATTCAAG-TTTCTTT
1 GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
* ** *
7352278 CAGTGGTGATATCCGAAGTCATTTGTATCTT
66 GA-TGGTGATATCTAAAGTCATTTGCATCTT
7352309 GGTGATATCT
Statistics
Matches: 716, Mismatches: 142, Indels: 45
0.79 0.16 0.05
Matches are distributed among these distances:
95 4 0.01
96 7 0.01
97 102 0.14
98 301 0.42
99 269 0.38
100 33 0.05
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (99 bp):
GTGGTGAAATCTGAATGTTAAAGCTTGAATTGTATTTTTTCGATAATGATATTCGAGTTTTCTTT
GATGGTGATATCTAAAGTCATTTGCATCTTCTTG
Found at i:7351905 original size:197 final size:198
Alignment explanation
Indices: 7351333--7352274 Score: 878
Period size: 197 Copynumber: 4.8 Consensus size: 198
7351323 CTTTTCAGTG
* * * * * *
7351333 GTGATATCCG-AGTGTTAAAACTTGAATTACATTTTTTCAATGGTGATATTTGAGTTTT-TTCGA
1 GTGATATCTGAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTTGA
* * ** *
7351396 TTGTAACATCCGAAGTCAGTTGCATCTTCTC-AGTGGTGAAATCTGAATGTTAAAGCTTGAATTG
66 TGGTAATATCTAAAGTCATTTGCATCTTCTCGA-TGGTGAAATCT-AATGTTAAAGCTTGAATTG
* * * *
7351460 CATTTTTTTGATAATGATATTCGAGTTTTCTTTGATAATTATATCTAAAGTCA-TTGCATCCTCT
129 TATTTTTTTGATGATGATATTCGAGTTTCCTTTGATAATGATATCTAAAGTCATTTGCATCCTCT
*
7351524 CGGT-
194 TGGTA
* * *
7351528 GATGATATCT-AAGTGTTAAACCTTGAATTATATTTTTTCGATGGTGATATTCGAGTTTTCTTT-
1 G-TGATATCTGAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTTG
* * *
7351591 AGTGGTAATAT-AAAAGTCATTTGCATCTTCTTGGTGGTGAAATCTGAATGTTAAAGCTTGAATT
65 A-TGGTAATATCTAAAGTCATTTGCATCTTCTCGATGGTGAAATCT-AATGTTAAAGCTTGAATT
* * *
7351655 GTATTTTTTCGATAATGATATTCGAGTTTTCTTTGATAATGATATCTAAAGTCATTTGCATCCTC
128 GTATTTTTTTGATGATGATATTCGAGTTTCCTTTGATAATGATATCTAAAGTCATTTGCATCCTC
7351720 TTGGTA
193 TTGGTA
* * *
7351726 GTGAAATCTGAA-TGTTAAAGCTTGAATTGCATTTTTTCGATAATGATATTCGAGTTTTCTTTGA
1 GTGATATCTGAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTTGA
** * * *
7351790 TAATGATATCTAAAGTCATTTGCATCCTCTCGATGGT-AATATCTAAGTGTTAAAGCTTGAATTA
66 TGGTAATATCTAAAGTCATTTGCATCTTCTCGATGGTGAA-ATCTAA-TGTTAAAGCTTGAATTG
* * * * ** * * *
7351854 TATTTTTTCGATGGTGATATTCAAGTTTCCTTTGGTGGTAATAT-AAAAGTCATTTGCATCTTCT
129 TATTTTTTTGATGATGATATTCGAGTTTCCTTTGATAATGATATCTAAAGTCATTTGCATCCTCT
7351918 TGGTA
194 TGGTA
* * * * * * * *
7351923 GTGATAT-TCG-AGTGTTAAAGCTTAAATTACATTTTCTCAACAATGATATTTGAGTTTCCTTCG
1 GTGATATCT-GAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTTG
* * * * * *
7351986 ACGGTGATAT-TCAAGTCATTTACATCTTCT-GACGGTGAAATCTGATTGTTAAAGCTTGAATTG
65 ATGGTAATATCTAAAGTCATTTGCATCTTCTCGATGGTGAAATCT-AATGTTAAAGCTTGAATTG
* * * * *** * * * * * *
7352049 CATTTTTTTAATGGTGATATTCGAG-TTCC-TTCAGTGGCGATATTTGAAGTTATTTGTATCTTT
129 TATTTTTTTGATGATGATATTCGAGTTTCCTTTGA-TAATGATATCTAAAGTCATTTGCATCCTC
* *
7352112 TTAGTG
193 TTGGTA
* ** *
7352118 GTGATATC-CAAGTGTT-AAGCTTGAATTGTATTTTCTCGATAGTGATATTCGAGTTTTCTTTCG
1 GTGATATCTGAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTT-G
* * * * * * * * *
7352181 GTGGCAATATCTAAAGTCATTGGTATCTTCTTGGTGATGATATCTAAATGTTAAAGCTTGACTTG
65 ATGGTAATATCTAAAGTCATTTGCATCTTCTCGATGGTGAAATCT-AATGTTAAAGCTTGAATTG
*
7352246 TATTTTTTTGATGATGATATTCAAGTTTC
129 TATTTTTTTGATGATGATATTCGAGTTTC
7352275 TTTCAGTGGT
Statistics
Matches: 620, Mismatches: 103, Indels: 45
0.81 0.13 0.06
Matches are distributed among these distances:
193 2 0.00
194 47 0.08
195 85 0.14
196 188 0.30
197 212 0.34
198 86 0.14
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (198 bp):
GTGATATCTGAAGTGTTAAAGCTTGAATTACATTTTTTCGATAGTGATATTCGAGTTTTCTTTGA
TGGTAATATCTAAAGTCATTTGCATCTTCTCGATGGTGAAATCTAATGTTAAAGCTTGAATTGTA
TTTTTTTGATGATGATATTCGAGTTTCCTTTGATAATGATATCTAAAGTCATTTGCATCCTCTTG
GTA
Found at i:7359867 original size:33 final size:33
Alignment explanation
Indices: 7359757--7359960 Score: 173
Period size: 33 Copynumber: 6.2 Consensus size: 33
7359747 AGGCTCTTTA
* *
7359757 TAAGCT-AGGCTTAAAA-TTTATTGAGGGCCAGC
1 TAAGCTGA-GCTTAAAATTTTACTAAGGGCCAGC
** * * *
7359789 TAATTTGAGCTTAAAATTTTA-TCAAAGGCTAGT
1 TAAGCTGAGCTTAAAATTTTACT-AAGGGCCAGC
*
7359822 TAAGTTGAGCTTAAAATTTTACTAAGGGCCAGC
1 TAAGCTGAGCTTAAAATTTTACTAAGGGCCAGC
* * * *
7359855 TAAACTGGGCTTAAAACTTTACTAAGGGTCAGC
1 TAAGCTGAGCTTAAAATTTTACTAAGGGCCAGC
* * *
7359888 TAAGCT-AGGCTTAAAATTTTACCAAAGGCCAAC
1 TAAGCTGA-GCTTAAAATTTTACTAAGGGCCAGC
** * * *
7359921 TAAGCTGAATTTAAAATTTTACTGAGTGCTAGC
1 TAAGCTGAGCTTAAAATTTTACTAAGGGCCAGC
7359954 TAAGCTG
1 TAAGCTG
7359961 TAAAGCCAAG
Statistics
Matches: 136, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
32 13 0.10
33 121 0.89
34 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (33 bp):
TAAGCTGAGCTTAAAATTTTACTAAGGGCCAGC
Found at i:7360621 original size:33 final size:33
Alignment explanation
Indices: 7360551--7360626 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
7360541 TAAGATATTT
* * * **
7360551 TGGGCTTAAAATTTTACCAAGGGCTAGCCAATT
1 TGGGCTTAAAATTTAACCAAGGACCAGCCAAGC
*
7360584 TGGGCTTAAAATTTAACCAAGGACCAGCTAAGC
1 TGGGCTTAAAATTTAACCAAGGACCAGCCAAGC
7360617 TGGGCTTAAA
1 TGGGCTTAAA
7360627 TTTGATCTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (33 bp):
TGGGCTTAAAATTTAACCAAGGACCAGCCAAGC
Found at i:7361051 original size:24 final size:25
Alignment explanation
Indices: 7361019--7361080 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 25
7361009 CAAATACCAG
* *
7361019 GATGAAAATGCAAATGTCTTATAT-
1 GATGCAAATGCAAACGTCTTATATA
*
7361043 GATGCAAATGCAAGCGTCTTATATA
1 GATGCAAATGCAAACGTCTTATATA
*
7361068 AATGCAAATGCAA
1 GATGCAAATGCAA
7361081 GTGATGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (25 bp):
GATGCAAATGCAAACGTCTTATATA
Found at i:7361128 original size:41 final size:43
Alignment explanation
Indices: 7361069--7361156 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 43
7361059 TCTTATATAA
* *
7361069 ATGCAAATGCAAGTGATGCAAATACGAATG-TCTTTC-TTATG
1 ATGCAAATGCAAGCGATGCAAATACAAATGCTCTTTCTTTATG
* *
7361110 ATGCATATGCAAGCGATGCAAATGCAAATGTCTCTTTCTTTATG
1 ATGCAAATGCAAGCGATGCAAATACAAATG-CTCTTTCTTTATG
7361154 ATG
1 ATG
7361157 TAGATGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 26 0.65
43 6 0.15
44 8 0.20
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (43 bp):
ATGCAAATGCAAGCGATGCAAATACAAATGCTCTTTCTTTATG
Found at i:7361294 original size:88 final size:88
Alignment explanation
Indices: 7361116--7361323 Score: 238
Period size: 88 Copynumber: 2.4 Consensus size: 88
7361106 TATGATGCAT
* * * * * *
7361116 ATGCAAGCGATGCAAATGCAAATGTCTCTTTCTTTATGATGTAGATGTGAATGTAAATGTCTTTC
1 ATGCAAGAGATGCAAATGCGAATGTCTTTTTCTTTATGATGCAGATGTGAAAGCAAATGTCTTTC
* *
7361181 TCATGATGCATATGCAAGTATGA
66 TCATGATGCACATGCAAGTACGA
* * * *
7361204 ATGCGAGTGATGCAAATGCGAATGTCTTTTTTTTTGTGATGCAGA-GTTGAAAGCAAATGTCTTT
1 ATGCAAGAGATGCAAATGCGAATGTCTTTTTCTTTATGATGCAGATG-TGAAAGCAAATGTCTTT
* *
7361268 TTCATGATGCACATGCAAGTGCGA
65 CTCATGATGCACATGCAAGTACGA
* ** *
7361292 ATGTAAGAGATATAAATGCGAATGTCATTTTC
1 ATGCAAGAGATGCAAATGCGAATGTCTTTTTC
7361324 ATTTTTTTAT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
87 1 0.01
88 98 0.99
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (88 bp):
ATGCAAGAGATGCAAATGCGAATGTCTTTTTCTTTATGATGCAGATGTGAAAGCAAATGTCTTTC
TCATGATGCACATGCAAGTACGA
Found at i:7361569 original size:38 final size:37
Alignment explanation
Indices: 7361461--7361570 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 37
7361451 GCAAATGTGA
* *
7361461 ATGCAAATGTC-CTTTTTTTTTATGTAGATGCAAGTG
1 ATGCAAATGTCTCTTTTTTTTGATGTAGATGTAAGTG
* * *
7361497 ATGCAAATGTGAATGACTTTTTATTGATGCAGATGTAAGTG
1 ATGCAAATGT--CT--CTTTTTTTTGATGTAGATGTAAGTG
7361538 ATGCAAATGTCTCTTTTTTTATGATGTAGATGT
1 ATGCAAATGTCTCTTTTTTT-TGATGTAGATGT
7361571 GAATGCAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
36 10 0.17
37 7 0.12
38 11 0.18
39 1 0.02
41 31 0.52
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (37 bp):
ATGCAAATGTCTCTTTTTTTTGATGTAGATGTAAGTG
Found at i:7361751 original size:87 final size:89
Alignment explanation
Indices: 7361551--7361759 Score: 235
Period size: 87 Copynumber: 2.3 Consensus size: 89
7361541 CAAATGTCTC
* *
7361551 TTTTTTTATGATGTAGATGTGAATGCAAATGTCTTTCTCATGATGTACATGCAAATGATACAAAT
1 TTTTTTTATGATGTAGA-GTGAAAGCAAATGTCTTTCTCATGATGCACATGCAAATGATACAAAT
** * * *
7361616 GCAGGTGATGCAAATGCGAATGTCC
65 AAAAGTGATGCAAATACGAATGTCA
* * * * * *
7361641 CTTTTTTGTGATGTAGAGTTGAAAGTAAATGTCTTTCTCATTATGCACATGC-AA-G-TGCGAAT
1 TTTTTTTATGATGTAGAG-TGAAAGCAAATGTCTTTCTCATGATGCACATGCAAATGATACAAAT
*
7361703 AAAAGTGATGCAAATATGAATGTCA
65 AAAAGTGATGCAAATACGAATGTCA
*
7361728 TTTTTTTATGATGCAGAGCTGAAAGCAAATGT
1 TTTTTTTATGATGTAGAG-TGAAAGCAAATGT
7361760 GAATATCTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
87 51 0.52
88 1 0.01
89 3 0.03
90 44 0.44
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (89 bp):
TTTTTTTATGATGTAGAGTGAAAGCAAATGTCTTTCTCATGATGCACATGCAAATGATACAAATA
AAAGTGATGCAAATACGAATGTCA
Found at i:7363154 original size:12 final size:12
Alignment explanation
Indices: 7363133--7363162 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7363123 CATTCATTTG
*
7363133 TTTTTGTTTTCT
1 TTTTTTTTTTCT
7363145 TTTTTTTTTTCT
1 TTTTTTTTTTCT
7363157 TTTTTT
1 TTTTTT
7363163 CACTGAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (12 bp):
TTTTTTTTTTCT
Found at i:7365822 original size:15 final size:15
Alignment explanation
Indices: 7365804--7365838 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7365794 GAAAATGATG
7365804 AAATAATAAATAAAA
1 AAATAATAAATAAAA
* *
7365819 AAATAATGAATAAAG
1 AAATAATAAATAAAA
7365834 AAATA
1 AAATA
7365839 TTTAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (15 bp):
AAATAATAAATAAAA
Found at i:7366247 original size:3 final size:3
Alignment explanation
Indices: 7366187--7366237 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
7366177 AGAATACGAA
7366187 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7366235 AAT
1 AAT
7366238 TTCATAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7366260 original size:18 final size:17
Alignment explanation
Indices: 7366224--7366267 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7366214 AATAATAATA
*
7366224 ATAATAATAATAATTTC
1 ATAATAAAAATAATTTC
*
7366241 ATAATAAAAATATTTTTC
1 ATAATAAAAATA-ATTTC
7366259 ATAAATAAA
1 AT-AATAAA
7366268 TTTTAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.48
18 6 0.26
19 6 0.26
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATAAAAATAATTTC
Found at i:7366747 original size:29 final size:31
Alignment explanation
Indices: 7366714--7366785 Score: 85
Period size: 32 Copynumber: 2.4 Consensus size: 31
7366704 TAAAATATTA
**
7366714 AATATAATATTTAAATT-TAAA-AATTTTTT
1 AATATAATATTTAAATTATAAATAATTAATT
* *
7366743 AATATCATATTTGAATTATAAATTAATTAATT
1 AATATAATATTTAAATTATAAA-TAATTAATT
7366775 AATATAATATT
1 AATATAATATT
7366786 ATTTTTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 15 0.43
30 4 0.11
32 16 0.46
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (31 bp):
AATATAATATTTAAATTATAAATAATTAATT
Found at i:7368077 original size:2 final size:2
Alignment explanation
Indices: 7368070--7368102 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7368060 AGTAACAAGA
*
7368070 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7368103 GACGCACACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7371374 original size:34 final size:33
Alignment explanation
Indices: 7371331--7371433 Score: 98
Period size: 34 Copynumber: 3.0 Consensus size: 33
7371321 TCTTCGTAAA
7371331 TTTTGAAAATAAATATTTGAGAGTTATATTATAT
1 TTTTGAAAATAAAT-TTTGAGAGTTATATTATAT
* * * * * *
7371365 TTTTAAAAATTCATTTTTGAGAATTTTATTACAT
1 TTTTGAAAA-TAAATTTTGAGAGTTATATTATAT
* * *
7371399 TTTCGAAAATAAATTTCTGAGAGTCATATTGTAT
1 TTTTGAAAATAAATTT-TGAGAGTTATATTATAT
7371433 T
1 T
7371434 CATTAAAATT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
33 5 0.10
34 44 0.85
35 3 0.06
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.48
Consensus pattern (33 bp):
TTTTGAAAATAAATTTTGAGAGTTATATTATAT
Found at i:7373041 original size:19 final size:19
Alignment explanation
Indices: 7373019--7373057 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7373009 AATAATGAAA
7373019 TAAAAAATTA-AAAATAAAT
1 TAAAAAATTAGAAAA-AAAT
*
7373038 TAAAAACTTAGAAAAAAAT
1 TAAAAAATTAGAAAAAAAT
7373057 T
1 T
7373058 CCATCCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (19 bp):
TAAAAAATTAGAAAAAAAT
Found at i:7373722 original size:20 final size:21
Alignment explanation
Indices: 7373688--7373728 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7373678 ATAAAGAGGG
7373688 GAGAGAAAAATGAGGA-AGAA
1 GAGAGAAAAATGAGGAGAGAA
7373708 GAGAGAAAAGA-GAGGAGAGAA
1 GAGAGAAAA-ATGAGGAGAGAA
7373729 AGAAATAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02
Consensus pattern (21 bp):
GAGAGAAAAATGAGGAGAGAA
Found at i:7373999 original size:34 final size:34
Alignment explanation
Indices: 7373928--7373992 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
7373918 AAAATTGAGT
*
7373928 TTTTCAAAAGTAAATATTCAAAAAATTTTAAAAA
1 TTTTCAAAAATAAATATTCAAAAAATTTTAAAAA
7373962 TTTTCAAAAATAAATATAT-AAAAAATTTTAA
1 TTTTCAAAAATAAATAT-TCAAAAAATTTTAA
7373993 GGATTTTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (34 bp):
TTTTCAAAAATAAATATTCAAAAAATTTTAAAAA
Found at i:7374449 original size:73 final size:72
Alignment explanation
Indices: 7374361--7374499 Score: 192
Period size: 73 Copynumber: 1.9 Consensus size: 72
7374351 TCAAATACCT
* *
7374361 TTTTTATCTTAAAAATATG-ATTTTTGTTAAAACTT-TAAAATTTTCAAAAATAAAGTTTCAAAA
1 TTTTTATCTTAAAAATATGCA-CTTTGTTAAAA-TTCCAAAATTTT-AAAAATAAAGTTTCAAAA
7374424 TCCATTCCGG
63 TCCATTCCGG
* * *
7374434 TTTTTATCTTTAAAATGTGCACTTTGTTAAAATTCCAAAATTTTAAAAATAAAGTTTCAATATCC
1 TTTTTATCTTAAAAATATGCACTTTGTTAAAATTCCAAAATTTTAAAAATAAAGTTTCAAAATCC
7374499 A
66 A
7374500 CTATATTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
72 23 0.39
73 35 0.59
74 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (72 bp):
TTTTTATCTTAAAAATATGCACTTTGTTAAAATTCCAAAATTTTAAAAATAAAGTTTCAAAATCC
ATTCCGG
Found at i:7374522 original size:72 final size:73
Alignment explanation
Indices: 7374361--7374519 Score: 175
Period size: 73 Copynumber: 2.2 Consensus size: 73
7374351 TCAAATACCT
* * * *
7374361 TTTTTATCTTAAAAATATG-ATTTTTGTTAAAACTTTAAAATTTTCAAAAATAAAGTTTCAAAAT
1 TTTTTATCTTTAAAATGTGCA-CTTTGTTAAAACTTCAAAATTTTCAAAAATAAAGTTTCAAAAT
* * *
7374425 CCATTCCGG
65 CCACTCAGA
*
7374434 TTTTTATCTTTAAAATGTGCACTTTGTTAAAA-TTCCAAAATTTT-AAAAATAAAGTTTCAATAT
1 TTTTTATCTTTAAAATGTGCACTTTGTTAAAACTT-CAAAATTTTCAAAAATAAAGTTTCAAAAT
*
7374497 CCACT-ATA
65 CCACTCAGA
7374505 TTTTT-TCTATTAAAA
1 TTTTTATCT-TTAAAA
7374520 ATGCAATATT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
70 3 0.04
71 11 0.15
72 24 0.32
73 35 0.47
74 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (73 bp):
TTTTTATCTTTAAAATGTGCACTTTGTTAAAACTTCAAAATTTTCAAAAATAAAGTTTCAAAATC
CACTCAGA
Found at i:7374532 original size:72 final size:71
Alignment explanation
Indices: 7374383--7374588 Score: 179
Period size: 72 Copynumber: 2.9 Consensus size: 71
7374373 AAATATGATT
* **
7374383 TTTGTTAAAACTTTAAAATTTTCAAAAATAAAGTTTCAAAATCCATTCCGGTTTTTATCT-TTAA
1 TTTGTTAAAA-TTTAAAATTTTCAAAAATAAAGTTTCAAAATCCACT-ATGTTTTT-TCTATTAA
* *
7374447 AATGTGCAC
63 AATATGCAA
* * *
7374456 TTTGTTAAAATTCCAAAATTTT-AAAAATAAAGTTTCAATATCCACTATATTTTTTCTATTAAAA
1 TTTGTTAAAATT-TAAAATTTTCAAAAATAAAGTTTCAAAATCCACTATGTTTTTTCTATTAAAA
7374520 -ATGCAATA
65 TATGC-A-A
* * * * * *
7374528 TTTGTTGAAATTTTAGAATTTTGAAAAA-ATAA-TTTTAACATCCACAATGTTTTTTCTATTA
1 TTTGTT-AAAATTTAAAATTTTCAAAAATA-AAGTTTCAAAATCCACTATGTTTTTTCTATTA
7374589 TTATTTTAAA
Statistics
Matches: 111, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
70 6 0.05
71 12 0.11
72 63 0.57
73 30 0.27
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (71 bp):
TTTGTTAAAATTTAAAATTTTCAAAAATAAAGTTTCAAAATCCACTATGTTTTTTCTATTAAAAT
ATGCAA
Found at i:7375222 original size:19 final size:19
Alignment explanation
Indices: 7375198--7375259 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
7375188 GTAAAAGTTT
7375198 AAATTATTTAAAATTTATA
1 AAATTATTTAAAATTTATA
* * *
7375217 AAATTATACT-AAATTAAGA
1 AAATTAT-TTAAAATTTATA
* *
7375236 AAATTATTTTATAATTTTTA
1 AAATTA-TTTAAAATTTATA
7375256 AAAT
1 AAAT
7375260 AAAAATAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
19 21 0.66
20 11 0.34
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
AAATTATTTAAAATTTATA
Found at i:7375269 original size:9 final size:9
Alignment explanation
Indices: 7375257--7375330 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
7375247 TAATTTTTAA
7375257 AATAAAAAT
1 AATAAAAAT
*
7375266 AATAAAATAA
1 AATAAAA-AT
7375276 AATAAAAA-
1 AATAAAAAT
7375284 AGAGGTAAAAA-
1 A-A--TAAAAAT
7375295 AACTAAAAAT
1 AA-TAAAAAT
7375305 -ATAAAAAT
1 AATAAAAAT
7375313 -A-AAAAAT
1 AATAAAAAT
*
7375320 AATAAGAAT
1 AATAAAAAT
7375329 AA
1 AA
7375331 AAACAAAAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
7 6 0.11
8 10 0.18
9 23 0.42
10 9 0.16
11 7 0.13
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (9 bp):
AATAAAAAT
Found at i:7375318 original size:16 final size:16
Alignment explanation
Indices: 7375257--7375333 Score: 56
Period size: 16 Copynumber: 4.9 Consensus size: 16
7375247 TAATTTTTAA
7375257 AATAAAAATAATAAAAT
1 AATAAAAATAA-AAAAT
**
7375274 AA-AATAAA-AAAGAGGT
1 AATAA-AAATAAA-AAAT
7375290 AA-AAAAACT-AAAAAT
1 AATAAAAA-TAAAAAAT
7375305 -ATAAAAATAAAAAAT
1 AATAAAAATAAAAAAT
*
7375320 AATAAGAATAAAAA
1 AATAAAAATAAAAA
7375334 CAAAAACAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
14 2 0.04
15 17 0.35
16 24 0.50
17 5 0.10
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (16 bp):
AATAAAAATAAAAAAT
Found at i:7375569 original size:4 final size:4
Alignment explanation
Indices: 7375560--7375614 Score: 61
Period size: 4 Copynumber: 15.5 Consensus size: 4
7375550 CTTTTAAATT
7375560 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTA -TTA -TTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
7375603 -TTA -TTA TTTA TT
1 TTTA TTTA TTTA TT
7375615 ATTATTATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 21 0.42
4 29 0.58
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:7375575 original size:12 final size:11
Alignment explanation
Indices: 7375560--7375620 Score: 69
Period size: 12 Copynumber: 5.8 Consensus size: 11
7375550 CTTTTAAATT
7375560 TTTATTTATTTA
1 TTTA-TTATTTA
7375572 TTTATTTATTTA
1 TTTA-TTATTTA
7375584 TTTATTA-TTA
1 TTTATTATTTA
7375594 -TTATTA-TTA
1 TTTATTATTTA
7375603 -TTATTATTTA
1 TTTATTATTTA
7375613 -TTATTATT
1 TTTATTATT
7375621 ATCTTTTTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.31
10 14 0.29
11 3 0.06
12 16 0.33
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:7375593 original size:3 final size:3
Alignment explanation
Indices: 7375585--7375622 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
7375575 ATTTATTTAT
7375585 TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T
7375623 CTTTTTCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7379157 original size:21 final size:23
Alignment explanation
Indices: 7379124--7379175 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
7379114 TTTCTTATAC
**
7379124 TTTTAAACTTATT-TAT-TTGAT
1 TTTTAAAAATATTATATATTGAT
*
7379145 TTTTAAAAATATTATATATTTAT
1 TTTTAAAAATATTATATATTGAT
7379168 TTTGTAAA
1 TTT-TAAA
7379176 CTATTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 11 0.44
22 3 0.12
23 7 0.28
24 4 0.16
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTAAAAATATTATATATTGAT
Found at i:7383029 original size:22 final size:22
Alignment explanation
Indices: 7383003--7383077 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 22
7382993 AAAAAAGTAC
* **
7383003 CTAACGGCCGTTGACAAGCCGG
1 CTAACGGCCGTTGGCAAGTGGG
7383025 CTAACGGCCGTTGGCAAGTGGG
1 CTAACGGCCGTTGGCAAGTGGG
*
7383047 CTAACGGCCGTTGGCAATTGGG
1 CTAACGGCCGTTGGCAAGTGGG
7383069 CTAACGGCC
1 CTAACGGCC
7383078 TGATTTCTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.20, C:0.28, G:0.35, T:0.17
Consensus pattern (22 bp):
CTAACGGCCGTTGGCAAGTGGG
Found at i:7387354 original size:14 final size:15
Alignment explanation
Indices: 7387290--7387354 Score: 62
Period size: 14 Copynumber: 4.3 Consensus size: 15
7387280 ATATATAATC
7387290 ATATATTTATAAATG
1 ATATATTTATAAATG
*
7387305 ATAAATTATAATTAAATG
1 ATATATT-T-A-TAAATG
* *
7387323 ATA-ATTTATACATA
1 ATATATTTATAAATG
7387337 ATATA-TTATAAATG
1 ATATATTTATAAATG
7387351 ATAT
1 ATAT
7387355 TATTCATCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 18 0.44
15 8 0.20
16 2 0.05
17 4 0.10
18 9 0.22
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (15 bp):
ATATATTTATAAATG
Found at i:7387424 original size:19 final size:20
Alignment explanation
Indices: 7387397--7387436 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7387387 ATTTTCAAGA
* *
7387397 ATTATAAAAATCTTTTTTTC
1 ATTATAAAAATATTTTCTTC
7387417 ATTA-AAAAATATTTTCTTC
1 ATTATAAAAATATTTTCTTC
7387436 A
1 A
7387437 ATTTATTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATAAAAATATTTTCTTC
Found at i:7387505 original size:24 final size:24
Alignment explanation
Indices: 7387478--7387527 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7387468 CTACGTTTTT
7387478 TCTTGTTTGATAAAAAATCAAGAA
1 TCTTGTTTGATAAAAAATCAAGAA
7387502 TCTTGTTTGATAAAAAATCAAGAA
1 TCTTGTTTGATAAAAAATCAAGAA
7387526 TC
1 TC
7387528 AATATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (24 bp):
TCTTGTTTGATAAAAAATCAAGAA
Found at i:7388367 original size:18 final size:18
Alignment explanation
Indices: 7388346--7388411 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
7388336 TTATCTAAAC
7388346 CTATTAAATTTAAATAAT
1 CTATTAAATTTAAATAAT
** *
7388364 CTATTAAATAATTATCTAAAA
1 CTATTAAAT--TTAAAT-AAT
*
7388385 ATATTAAATTTAAATAAT
1 CTATTAAATTTAAATAAT
*
7388403 TTATTAAAT
1 CTATTAAAT
7388412 AAAATTATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 19 0.51
19 4 0.11
20 4 0.11
21 10 0.27
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (18 bp):
CTATTAAATTTAAATAAT
Found at i:7388390 original size:39 final size:39
Alignment explanation
Indices: 7388336--7388413 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
7388326 ATTCATTAAC
**
7388336 TTATCTAAACCTATTAAATTTAAATAATCTATTAAATAA
1 TTATCTAAAAATATTAAATTTAAATAATCTATTAAATAA
*
7388375 TTATCTAAAAATATTAAATTTAAATAATTTATTAAATAA
1 TTATCTAAAAATATTAAATTTAAATAATCTATTAAATAA
7388414 AATTATTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.42
Consensus pattern (39 bp):
TTATCTAAAAATATTAAATTTAAATAATCTATTAAATAA
Found at i:7388411 original size:12 final size:12
Alignment explanation
Indices: 7388355--7388413 Score: 50
Period size: 12 Copynumber: 4.7 Consensus size: 12
7388345 CCTATTAAAT
*
7388355 TTAAATAATCTA
1 TTAAATAATTTA
7388367 TTAAATAA-TTA
1 TTAAATAATTTA
7388378 TCTAAA-AATATTAAA
1 T-TAAATAAT-TT--A
7388393 TTTAAATAATTTA
1 -TTAAATAATTTA
7388406 TTAAATAA
1 TTAAATAA
7388414 AATTATTTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
11 5 0.13
12 20 0.51
13 3 0.08
15 7 0.18
16 4 0.10
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAAATAATTTA
Found at i:7393328 original size:63 final size:63
Alignment explanation
Indices: 7393149--7393465 Score: 209
Period size: 63 Copynumber: 5.0 Consensus size: 63
7393139 TGTTTTAGAG
* * * ***
7393149 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTATAATGATCAATTACTGGGTTATAAAA
1 CCTATAAATGTAGTAATTGATTATTTTAAAACAATTACAATTATCAATTACTACATTATAAAA
* * * *
7393212 --TA-AAGTAT-TACAGTAATTGATCT-TTTGAAAAAAAAATAAAATTATCAATTACTACATT-T
1 CCTATAA--ATGT--AGTAATTGAT-TATTT-TAAAACAATTACAATTATCAATTACTACATTAT
7393271 CAAAA
60 -AAAA
* *
7393276 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATAATCAATTACTACATTATAAAA
1 CCTATAAATGTAGTAATTGATTATTTTAAAACAATTACAATTATCAATTACTACATTATAAAA
** ** * * * * *** * *
7393339 CAAAGCAATGTAGTAATTGATCATTTGAAAA-AATTGACAATTATTAACTA-TTGTTTTTCAAAG
1 CCTATAAATGTAGTAATTGATTATTTTAAAACAATT-ACAATTATCAATTACTACATTAT-AAAA
* * * ** * *
7393402 CTTATAAATGCAGTAATTGATTATTTTAAAATAATTACAACGATTAATTATTACATTATAAAA
1 CCTATAAATGTAGTAATTGATTATTTTAAAACAATTACAATTATCAATTACTACATTATAAAA
7393465 C
1 C
7393466 AAAATAACAC
Statistics
Matches: 194, Mismatches: 43, Indels: 34
0.72 0.16 0.13
Matches are distributed among these distances:
60 2 0.01
61 3 0.02
62 10 0.05
63 122 0.63
64 50 0.26
65 2 0.01
66 3 0.02
67 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (63 bp):
CCTATAAATGTAGTAATTGATTATTTTAAAACAATTACAATTATCAATTACTACATTATAAAA
Found at i:7393356 original size:127 final size:127
Alignment explanation
Indices: 7393149--7393516 Score: 434
Period size: 126 Copynumber: 2.9 Consensus size: 127
7393139 TGTTTTAGAG
* *** *
7393149 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTATAATGATCAATTACTGGGTTATAAAATA
1 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATGATCAATTACTACATTATAAAACA
*
7393214 AAGTATTACAGTAATTGATCTTTTGAAAAAAAAATAAAATTATCAATTACTACATTTCAAAA
66 AAGTAATACAGTAATTGATCTTTTGAAAAAAAAATAAAATTATCAATTACTACATTTCAAAA
*
7393276 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATAATCAATTACTACATTATAAAACA
1 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATGATCAATTACTACATTATAAAACA
* ** * * * * * * *** *
7393341 AAGCAATGTAGTAATTGATCATTTG--AAAAAATTGACAATTATTAACTATTGTTTTTCAAAG
66 AAGTAATACAGTAATTGATCTTTTGAAAAAAAAAT-AAAATTATCAATTACTACATTTCAAAA
* * * * * * *
7393402 CTTATAAATGCAGTAATTGATTATTTTAAAATAATTACAACGATTAATTATTACATTATAAAACA
1 CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATGATCAATTACTACATTATAAAACA
* * *
7393467 AAATAACACAGTAATTGATCTTTTGAAAAAAAAATTAGAATTATCAATTA
66 AAGTAATACAGTAATTGATCTTTTGAAAAAAAAA-TAAAATTATCAATTA
7393517 TTATGTTTCA
Statistics
Matches: 199, Mismatches: 38, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
125 7 0.04
126 95 0.48
127 79 0.40
128 17 0.09
129 1 0.01
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (127 bp):
CCTATAAATGTAGTAATTGATTGTTTTAAAACAATTACAATGATCAATTACTACATTATAAAACA
AAGTAATACAGTAATTGATCTTTTGAAAAAAAAATAAAATTATCAATTACTACATTTCAAAA
Found at i:7399582 original size:59 final size:58
Alignment explanation
Indices: 7399425--7399939 Score: 605
Period size: 59 Copynumber: 8.7 Consensus size: 58
7399415 TAATTTCAAG
* *
7399425 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AATTTTC
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * *
7399483 AAAAAAAAAAAAAGATTATTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 ------AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTTC
* * *
7399548 AAAAAAATATTTTTG-GGAAAAAGTTGAAAATATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
*
7399606 AAAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAA-TTTTC
* * *
7399667 -AAAAAATATTTATGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* * * *
7399723 TAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAAATTTTC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-AA--AATAAATTTTC
*
7399784 -AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTT-CTTTAAAAGTAAATTTTC
1 AAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-TAAATTTTC
* * * *
7399841 AAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
*
7399900 AAAAAAA-AGTTTTTGAAGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7399940 TCCTGCACAA
Statistics
Matches: 397, Mismatches: 35, Indels: 44
0.83 0.07 0.09
Matches are distributed among these distances:
56 2 0.01
57 52 0.13
58 60 0.15
59 163 0.41
60 63 0.16
61 5 0.01
63 40 0.10
64 6 0.02
65 6 0.02
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
Found at i:7399822 original size:117 final size:116
Alignment explanation
Indices: 7399425--7399939 Score: 660
Period size: 117 Copynumber: 4.3 Consensus size: 116
7399415 TAATTTCAAG
* *
7399425 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AATTTTCAAAAAA
1 AAAAAATAT-TTTTGGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-----AA
* * * * *
7399489 AAAAAAAGATTATTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
59 AAAAAAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTTC
* *
7399548 AAAAAAATATTTTTGG-GAAAAAGTTGAAAATATCAATTTTCTTTAAAAATAAATTTTCAAAAAA
1 -AAAAAATATTTTTGGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-AAAAAA
* * * *
7399612 AAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
63 AAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCG-AAATTAAAATTTTC
* * * *
7399667 AAAAAATATTTATGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-TAAAAAAG
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAAAAAAAAA
7399731 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAAATTTTC
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATT--AAAATTTTC
* * *
7399784 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCTTTAAAAGTAAATTTTCAAAAAATA
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-AAAAAAAA
7399849 AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAA-TTTC
65 AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTTC
* *
7399900 AAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATA-TTTTTGGAGAAAAGTTGAAAGTATCAATTTT
7399940 TCCTGCACAA
Statistics
Matches: 352, Mismatches: 30, Indels: 25
0.86 0.07 0.06
Matches are distributed among these distances:
115 4 0.01
116 52 0.15
117 94 0.27
118 86 0.24
119 66 0.19
121 1 0.00
122 29 0.08
123 11 0.03
124 9 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (116 bp):
AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAAAAAAAAA
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTTC
Found at i:7411850 original size:5 final size:5
Alignment explanation
Indices: 7411820--7411860 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
7411810 ATATGAATAA
7411820 TAATT T-ATT TAATT T-ATT T-ATAT TAATT TAATT TAATT TAA
1 TAATT TAATT TAATT TAATT TAAT-T TAATT TAATT TAATT TAA
7411861 CTCATTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 10 0.30
5 21 0.64
6 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TAATT
Found at i:7411855 original size:10 final size:9
Alignment explanation
Indices: 7411820--7411860 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
7411810 ATATGAATAA
7411820 TAATTTATT
1 TAATTTATT
7411829 TAATTTATT
1 TAATTTATT
*
7411838 TATATTAATT
1 TA-ATTTATT
7411848 TAATTTAATT
1 TAATTT-ATT
7411858 TAA
1 TAA
7411861 CTCATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 14 0.50
10 14 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TAATTTATT
Found at i:7411867 original size:19 final size:19
Alignment explanation
Indices: 7411826--7411869 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7411816 ATAATAATTT
*
7411826 ATTTAATTTATTTATATTA
1 ATTTAATTTATTTATACTA
*
7411845 ATTTAATTTAATTTA-ACTC
1 ATTTAATTT-ATTTATACTA
7411864 ATTTAA
1 ATTTAA
7411870 AATTAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAATTTATTTATACTA
Found at i:7411900 original size:24 final size:26
Alignment explanation
Indices: 7411815--7411900 Score: 72
Period size: 29 Copynumber: 3.3 Consensus size: 26
7411805 ATTGAATATG
* *
7411815 AATAATAATTTATTTAATTTATTTAT
1 AATAATAATTTAATTAACTTATTTAT
* *
7411841 ATTAATTTAATTTAATTTAACTCATTTA-
1 AATAA--TAATTTAA-TTAACTTATTTAT
*
7411869 AA-ATTAA-TTAATTAA-TTATTTAT
1 AATAATAATTTAATTAACTTATTTAT
7411892 AATAATAAT
1 AATAATAAT
7411901 AAAATTATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 13
0.69 0.12 0.19
Matches are distributed among these distances:
22 6 0.13
23 6 0.13
24 8 0.17
25 3 0.07
26 4 0.09
27 1 0.02
28 8 0.17
29 10 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
AATAATAATTTAATTAACTTATTTAT
Found at i:7411920 original size:6 final size:6
Alignment explanation
Indices: 7411911--7411939 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
7411901 AAAATTATTT
7411911 TTTTAA TTTTAA TTTTAA TTTT-A TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
7411940 AATTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:7412050 original size:25 final size:23
Alignment explanation
Indices: 7411995--7412051 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
7411985 CTTGATTATA
7411995 ATTTATTTATTATTTATAAATAT
1 ATTTATTTATTATTTATAAATAT
* * *
7412018 ATTAATTTATTATTTTTGTGAATAT
1 ATTTATTTATTA--TTTATAAATAT
7412043 ATTTATTTA
1 ATTTATTTA
7412052 ATTTTTACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 11 0.39
25 17 0.61
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (23 bp):
ATTTATTTATTATTTATAAATAT
Found at i:7412055 original size:23 final size:23
Alignment explanation
Indices: 7411995--7412058 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
7411985 CTTGATTATA
7411995 ATTTATTT-ATTATTTATAAATAT
1 ATTTATTTAATT-TTTATAAATAT
* * *
7412018 ATTAATTTATTATTTTTGTGAATAT
1 ATTTATTTA--ATTTTTATAAATAT
7412043 ATTTATTTAATTTTTA
1 ATTTATTTAATTTTTA
7412059 CAAACGAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
23 13 0.39
25 17 0.52
26 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (23 bp):
ATTTATTTAATTTTTATAAATAT
Done.