Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 47 of 64
Found at i:7412562 original size:27 final size:28
Alignment explanation
Indices: 7412506--7412577 Score: 83
Period size: 27 Copynumber: 2.5 Consensus size: 28
7412496 AATGTTATGA
*
7412506 ATAATTTTTAAATTATAATAAAATATTTAAT
1 ATAATATTTAAA-T-TAA-AAAATATTTAAT
*
7412537 ATATTATTTAAATTAAAAAAT-TTTAAT
1 ATAATATTTAAATTAAAAAATATTTAAT
*
7412564 TTAATATTTAAATT
1 ATAATATTTAAATT
7412578 GTGATACTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 18 0.49
28 5 0.14
29 3 0.08
30 1 0.03
31 10 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
ATAATATTTAAATTAAAAAATATTTAAT
Found at i:7413443 original size:26 final size:24
Alignment explanation
Indices: 7413385--7413435 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7413375 CGTTTTTATC
*
7413385 TTAAAAATTTTATTTTTGTTATATT
1 TTAAAAA-ATTATTTTTGTTATATT
*
7413410 TTGAAAAATTATTTTT-TTCATATT
1 TTAAAAAATTATTTTTGTT-ATATT
7413434 TT
1 TT
7413436 TAACAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 2 0.09
24 15 0.65
25 6 0.26
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
TTAAAAAATTATTTTTGTTATATT
Found at i:7413452 original size:18 final size:18
Alignment explanation
Indices: 7413429--7413495 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
7413419 TATTTTTTTC
7413429 ATATTTTTAACAAAAAAT
1 ATATTTTTAACAAAAAAT
*
7413447 ATATTTTTATCTTAGAAAAAT
1 ATATTTTTAAC--A-AAAAAT
*
7413468 -TATCTTTTCAACAAAAATT
1 ATAT-TTTT-AACAAAAAAT
*
7413487 ATGTTTTTA
1 ATATTTTTA
7413496 TATTGAAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
18 11 0.28
19 9 0.23
20 7 0.18
21 10 0.26
22 2 0.05
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.46
Consensus pattern (18 bp):
ATATTTTTAACAAAAAAT
Found at i:7413484 original size:40 final size:40
Alignment explanation
Indices: 7413432--7413555 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
7413422 TTTTTTCATA
* *
7413432 TTTTTAACAAAAAATATATTTTTATCTTAGAAAAATTATC
1 TTTTCAACAAAAATTATATTTTTATCTTAGAAAAATTATC
* * *** *
7413472 TTTTCAACAAAAATTATGTTTTTATATT-GAAAGCGTAGTT
1 TTTTCAACAAAAATTATATTTTTATCTTAGAAAAATTA-TC
* *
7413512 TTTTCAACAAAAATTGTATTTTTAATCTTA-AAAATATCATC
1 TTTTCAACAAAAATTATATTTTT-ATCTTAGAAAA-ATTATC
7413553 TTT
1 TTT
7413556 GTAGAATTTT
Statistics
Matches: 64, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
39 6 0.09
40 46 0.72
41 11 0.17
42 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46
Consensus pattern (40 bp):
TTTTCAACAAAAATTATATTTTTATCTTAGAAAAATTATC
Found at i:7413506 original size:154 final size:150
Alignment explanation
Indices: 7413326--7413649 Score: 361
Period size: 154 Copynumber: 2.1 Consensus size: 150
7413316 TTTTTAAAAT
* * * * *
7413326 AAAAATAATGTTTTCATCTTAGAAGCGTCGTTTTTT-ATAAAAGAAATTACGTTTTT-ATCTTAA
1 AAAAATTATGTTTTTATATTAGAAGCGTAGTTTTTTCA-AAAA-AAATTACATTTTTAATCTTAA
* * * * * * *
7413389 AAATTTTATTTTTGTTA-TATTTTGAAAAATTATTTTTTTCATATTTTTAACAAAAAATATATTT
64 AAATATCATCTTTG-TAGAATTTTGAAAAA-TATATTTTTAATATTTTCAAC--AAAATATATTT
7413453 TTATCTTAGAAAAATTATCTTTTCAA
125 TTATCTTAGAAAAATTATCTTTTCAA
* **
7413479 CAAAAATTATGTTTTTATATT-GAAAGCGTAGTTTTTTCAACAAAAATTGTATTTTTAATCTTAA
1 -AAAAATTATGTTTTTATATTAG-AAGCGTAGTTTTTTCAAAAAAAATTACATTTTTAATCTTAA
* *
7413543 AAATATCATCTTTGTAGAATTTTGAAAAATATATTTTTAATATTTTCAACAAACTATGTTTTTAT
64 AAATATCATCTTTGTAGAATTTTGAAAAATATATTTTTAATATTTTCAACAAAATATATTTTTAT
* *
7413608 CTTAGAAACATTATTTTTTCAA
129 CTTAGAAAAATTATCTTTTCAA
7413630 AAAAACTTATGTTTTT-TATT
1 AAAAA-TTATGTTTTTATATT
7413650 TTTGAAAACA
Statistics
Matches: 146, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
150 9 0.06
151 43 0.29
153 31 0.21
154 62 0.42
155 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (150 bp):
AAAAATTATGTTTTTATATTAGAAGCGTAGTTTTTTCAAAAAAAATTACATTTTTAATCTTAAAA
ATATCATCTTTGTAGAATTTTGAAAAATATATTTTTAATATTTTCAACAAAATATATTTTTATCT
TAGAAAAATTATCTTTTCAA
Found at i:7413643 original size:40 final size:40
Alignment explanation
Indices: 7413585--7413663 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 40
7413575 ATTTTTAATA
*
7413585 TTTTCAACAAACTATG-TTTTTATCTTAG-AAACATTATT
1 TTTTCAAAAAACTATGTTTTTTATCTTAGAAAACATTATT
* *
7413623 TTTTCAAAAAAACTTATGTTTTTTATTTTTGAAAACATTAT
1 TTTTC-AAAAAAC-TATGTTTTTTATCTTAGAAAACATTAT
7413664 CTTTGTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 5 0.15
39 6 0.18
40 4 0.12
41 10 0.29
42 9 0.26
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.49
Consensus pattern (40 bp):
TTTTCAAAAAACTATGTTTTTTATCTTAGAAAACATTATT
Found at i:7413663 original size:24 final size:24
Alignment explanation
Indices: 7413631--7413682 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
7413621 TTTTTTCAAA
* * *
7413631 AAAACTTATGTTT-TTTATTTTTG
1 AAAACTTATCTTTGTTAAATTTTG
7413654 AAAACATTATCTTTGTTAAATTTTG
1 AAAAC-TTATCTTTGTTAAATTTTG
7413679 AAAA
1 AAAA
7413683 ATAAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 7 0.29
25 12 0.50
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.50
Consensus pattern (24 bp):
AAAACTTATCTTTGTTAAATTTTG
Found at i:7413913 original size:30 final size:27
Alignment explanation
Indices: 7413858--7413913 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
7413848 TTTTTAAAAA
*
7413858 AATATATTAAAAAAATTTTATTTTTAT
1 AATATATTAAAAAAATTTTAATTTTAT
*
7413885 AATATTTTATAAAAAATTATTACATTTTA
1 AATATATTA-AAAAAATT-TTA-ATTTTA
7413914 AAGATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 8 0.33
29 3 0.12
30 5 0.21
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (27 bp):
AATATATTAAAAAAATTTTAATTTTAT
Found at i:7418619 original size:2 final size:2
Alignment explanation
Indices: 7418614--7418645 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7418604 GATAAATGTG
*
7418614 CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7418646 ATGAAACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:7420138 original size:3 final size:3
Alignment explanation
Indices: 7420130--7420154 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7420120 TATAAAAATC
7420130 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
7420155 AAATTTTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7422185 original size:25 final size:23
Alignment explanation
Indices: 7422139--7422185 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
7422129 TACTGATATG
* *
7422139 ATAATTTTAAATATAATATAAAA
1 ATAATTTTAAAAATAAAATAAAA
7422162 ATAATTTTTAAAAAATAAAATAAA
1 ATAA-TTTT-AAAAATAAAATAAA
7422186 GTTACATGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 4 0.20
25 12 0.60
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAATTTTAAAAATAAAATAAAA
Found at i:7424116 original size:30 final size:30
Alignment explanation
Indices: 7424068--7424126 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
7424058 TTTGTTCAAG
* * *
7424068 TAATTAGTCACTTGGGTTCATAAAAAAAAT
1 TAATTAATCACCTAGGTTCATAAAAAAAAT
7424098 TAATTAATCACCTAGGTTCATAAAAAAAA
1 TAATTAATCACCTAGGTTCATAAAAAAAA
7424127 AATTAGTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (30 bp):
TAATTAATCACCTAGGTTCATAAAAAAAAT
Found at i:7424669 original size:20 final size:19
Alignment explanation
Indices: 7424636--7424674 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
7424626 GTAATCATGA
*
7424636 TTAAAATTTAAAATTTCTGG
1 TTAAAATCTAAAA-TTCTGG
*
7424656 TTAAAATCTCAAATTCTGG
1 TTAAAATCTAAAATTCTGG
7424675 CTAGTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
TTAAAATCTAAAATTCTGG
Found at i:7426462 original size:20 final size:18
Alignment explanation
Indices: 7426437--7426477 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
7426427 ATTTTACTTA
7426437 TTTTTTCTATTTATTTCTTT
1 TTTTTTCTATTT-TTT-TTT
*
7426457 TTTTTTCTCTTTTTTTTT
1 TTTTTTCTATTTTTTTTT
7426475 TTT
1 TTT
7426478 GGCAGTGGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTCTATTTTTTTTT
Found at i:7427456 original size:18 final size:21
Alignment explanation
Indices: 7427419--7427457 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
7427409 AAAATTTTTT
7427419 TTTTGAAATATTTATATATTA
1 TTTTGAAATATTTATATATTA
7427440 TTTT-AAAT-TTTAT-TATTA
1 TTTTGAAATATTTATATATTA
7427458 ATATTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 4 0.22
21 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTGAAATATTTATATATTA
Found at i:7429563 original size:15 final size:14
Alignment explanation
Indices: 7429543--7429572 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7429533 TTATTTTTAT
7429543 TCAAAAAATCAAAAA
1 TCAAAAAAT-AAAAA
7429558 TCAAAAAATAAAAA
1 TCAAAAAATAAAAA
7429572 T
1 T
7429573 TTTAATGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (14 bp):
TCAAAAAATAAAAA
Found at i:7432515 original size:19 final size:19
Alignment explanation
Indices: 7432493--7432536 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7432483 AGCAAAAGTG
7432493 GAAGCAAAAACAAA-AGAAA
1 GAAG-AAAAACAAAGAGAAA
*
7432512 GAAGAAAGACAAAGAGAAA
1 GAAGAAAAACAAAGAGAAA
*
7432531 AAAGAA
1 GAAGAA
7432537 TAAGATGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (19 bp):
GAAGAAAAACAAAGAGAAA
Found at i:7433804 original size:35 final size:35
Alignment explanation
Indices: 7433756--7433853 Score: 103
Period size: 34 Copynumber: 2.9 Consensus size: 35
7433746 TATGCATTAG
* * *
7433756 TTTTTTTGA-AAAAGACATTTACATTTCATGTGTA
1 TTTTTTTAAGAAAAGACATTTACATTTCATGAGCA
* *
7433790 TTTTTTTAAGAAAAGACATTTGCATCTCATGAGCA
1 TTTTTTTAAGAAAAGACATTTACATTTCATGAGCA
**
7433825 -TCATTTAAGAAAAGACATTTGA-ATTTCAT
1 TTTTTTTAAGAAAAGACATTT-ACATTTCAT
7433854 TTGCATCATA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 32 0.60
35 21 0.40
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (35 bp):
TTTTTTTAAGAAAAGACATTTACATTTCATGAGCA
Found at i:7433860 original size:34 final size:34
Alignment explanation
Indices: 7433794--7433862 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
7433784 TGTGTATTTT
*
7433794 TTTAAGAAAAGACATTTGCATCTCATGAGCATCA
1 TTTAAGAAAAGACATTTGAATCTCATGAGCATCA
* **
7433828 TTTAAGAAAAGACATTTGAATTTCATTTGCATCA
1 TTTAAGAAAAGACATTTGAATCTCATGAGCATCA
7433862 T
1 T
7433863 AATAGTGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (34 bp):
TTTAAGAAAAGACATTTGAATCTCATGAGCATCA
Found at i:7434411 original size:140 final size:141
Alignment explanation
Indices: 7434205--7434478 Score: 374
Period size: 140 Copynumber: 2.0 Consensus size: 141
7434195 CTTGGTAGTG
* * * * *
7434205 ATATCTGAGTGTTGAAGCTTGAATTACATTTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGG
1 ATATCAGAGTGTTAAAGCTTCAATTACATTGTTCTCGATGGTGATATTCGAGTTTCTTTCAGTGG
* * *
7434270 TGATATCTGAAGTCATTTGCATATTCTCGATGGTGATAT-TCAAGTGTTAAAGTTTGATTTGTAT
66 TGATATCCGAAGTCATTTGCATATTCTCAATGGTGATATCT-AAGTGATAAAGTTTGATTTGTAT
7434334 TTTTTTATGATA
130 TTTTTTATGATA
* * *
7434346 ATATCAGAGTGTTAAAGCTTCAATTATA-TGTTCTCGATGTTGATATTCGAGTTTCTTT-TGATG
1 ATATCAGAGTGTTAAAGCTTCAATTACATTGTTCTCGATGGTGATATTCGAGTTTCTTTCAG-TG
* * * *
7434409 GTGATATCCGAAGTTATTTGTATATTCTCAATGGTGATATCTGAGTGATAAGGTTTGATTTGTAT
65 GTGATATCCGAAGTCATTTGCATATTCTCAATGGTGATATCTAAGTGATAAAGTTTGATTTGTAT
7434474 TTTTT
130 TTTTT
7434479 CGATAGTGAT
Statistics
Matches: 116, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
139 1 0.01
140 90 0.78
141 25 0.22
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.46
Consensus pattern (141 bp):
ATATCAGAGTGTTAAAGCTTCAATTACATTGTTCTCGATGGTGATATTCGAGTTTCTTTCAGTGG
TGATATCCGAAGTCATTTGCATATTCTCAATGGTGATATCTAAGTGATAAAGTTTGATTTGTATT
TTTTTATGATA
Found at i:7434482 original size:99 final size:98
Alignment explanation
Indices: 7434379--7434694 Score: 309
Period size: 99 Copynumber: 3.2 Consensus size: 98
7434369 TTATATGTTC
* * * *
7434379 TCGATGTTGATATTCGAGTTTCTTTTGATGGTGATATCCGAAGTTATTTGTATATTCTCAATGGT
1 TCGATGGTGATATTCGAGTTTC-TTTGATGGTGATATTCGAAGTCATTTGCATATTCTCAATGGT
* **
7434444 GATATCTGAGTGATAAGGTTTGATTTGTATTTTT
65 GATATCCGAGTGATAAGGTTTGATTTACATTTTT
* * *
7434478 TCGATAGTGATATTCGAGTTTCGTTCA--GTGACATTATTCGAAGTCATTTGCATA-TCTTCAAT
1 TCGATGGTGATATTCGAGTTTCTTTGATGGTG--A-TATTCGAAGTCATTTGCATATTC-TCAAT
* * * *
7434540 GGTGACATCCGAGT-ATTAAGGCTTAAATTACATTTTT
62 GGTGATATCCGAGTGA-TAAGGTTTGATTTACATTTTT
* * * * * * **
7434577 TGGATGGTGATATTCAAGTTTCCTTCGGTGATGATATTTGAAGTCATTTGCATATTCTCGGTGGT
1 TCGATGGTGATATTCGAGTTT-CTTTGATGGTGATATTCGAAGTCATTTGCATATTCTCAATGGT
*
7434642 GATATCCGAGTGTTAAGGTTTGATTTACATTTTCT
65 GATATCCGAGTGATAAGGTTTGATTTACATTTT-T
*
7434677 T-GATGGTGATATCCGAGT
1 TCGATGGTGATATTCGAGT
7434695 GTTAAAACTT
Statistics
Matches: 174, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
96 3 0.02
98 7 0.04
99 155 0.89
100 7 0.04
102 2 0.01
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.43
Consensus pattern (98 bp):
TCGATGGTGATATTCGAGTTTCTTTGATGGTGATATTCGAAGTCATTTGCATATTCTCAATGGTG
ATATCCGAGTGATAAGGTTTGATTTACATTTTT
Found at i:7434697 original size:42 final size:42
Alignment explanation
Indices: 7434622--7434736 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
7434612 ATTTGAAGTC
* * ** *
7434622 ATTTGCATATTCTCGGTGGTGATATCCGAGTGTT-AAGGTTTG
1 ATTT-CATGTTCTCGATGGTGATATCCGAGTGTTAAAACTTTA
* *
7434664 ATTTACATTTTCTTGATGGTGATATCCGAGTGTTAAAACTTTA
1 ATTT-CATGTTCTCGATGGTGATATCCGAGTGTTAAAACTTTA
*
7434707 ATTTCATGTTCTCGATGGTGATATTCGAGT
1 ATTTCATGTTCTCGATGGTGATATCCGAGT
7434737 TTCTTTCGGT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 53 0.85
43 9 0.15
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.43
Consensus pattern (42 bp):
ATTTCATGTTCTCGATGGTGATATCCGAGTGTTAAAACTTTA
Found at i:7434745 original size:141 final size:141
Alignment explanation
Indices: 7434538--7434835 Score: 425
Period size: 141 Copynumber: 2.1 Consensus size: 141
7434528 CATATCTTCA
* ** * * *
7434538 ATGGTGACATCCGAGTATTAAGGCTTAAATTACATTTTTTGGATGGTGATATTCAAGTTTCCTTC
1 ATGGTGATATCCGAGTATTAAAACTTAAATTACATGTTCTCGATGGTGATATTCAAGTTTCCTTC
** * *
7434603 GGTGATGATATTTGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTT
66 GGTGATGATATCCGAAGTCATTTGCATATTATCGGTGGTGATATCCGAGTGATAAGGTTTGATTT
*
7434668 ACATTTTCTTG
131 ACATTTTCTCG
* * * * *
7434679 ATGGTGATATCCGAGTGTTAAAACTTTAATTTCATGTTCTCGATGGTGATATTCGAGTTTCTTTC
1 ATGGTGATATCCGAGTATTAAAACTTAAATTACATGTTCTCGATGGTGATATTCAAGTTTCCTTC
* *
7434744 GGTGGTGATATCCGAAGTCATTTGCATATTATTGGTGGTGATATCCGAGTGATAAGGTTTGATTT
66 GGTGATGATATCCGAAGTCATTTGCATATTATCGGTGGTGATATCCGAGTGATAAGGTTTGATTT
7434809 ACATTTTCTCG
131 ACATTTTCTCG
*
7434820 ATGGTGATATTCGAGT
1 ATGGTGATATCCGAGT
7434836 TTCTTTCGGT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
141 138 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.41
Consensus pattern (141 bp):
ATGGTGATATCCGAGTATTAAAACTTAAATTACATGTTCTCGATGGTGATATTCAAGTTTCCTTC
GGTGATGATATCCGAAGTCATTTGCATATTATCGGTGGTGATATCCGAGTGATAAGGTTTGATTT
ACATTTTCTCG
Found at i:7434762 original size:240 final size:238
Alignment explanation
Indices: 7434478--7435421 Score: 821
Period size: 240 Copynumber: 3.9 Consensus size: 238
7434468 TTGTATTTTT
* ** * *
7434478 TCGATAGTGATATTCGAGTTTCGTTCAGT-GACATTATTCGAAGTCATTTGCATA-TCTTCAATG
1 TCGATAGTGATATTCGAGTTTC-TTCGGTGGTGA-TATCCGAAGTCATTTGCATATTC-TCGATG
* * * * *
7434541 GTGACATCCGAGTATTAAGGCTTAAATTACATTTTTTGGATGGTGATATTCAAGTTTCCTTCGGT
63 GTGATATCCGAGTATTAAGGCTTGAATTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGT
** *
7434606 GATGATATTTGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTACA
128 GATGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTAATTTACA
* *
7434671 TTTTCTTGATGGTGATATCCGAGTGTTAAAACTTTAATTTCATGTTC
193 TTTTCTTGATAGTGATATCCGAGTGTTAAAACTTTAATTGCAT-TTC
* * * *
7434718 TCGATGGTGATATTCGAGTTTCTTTCGGTGGTGATATCCGAAGTCATTTGCATATTATTGGTGGT
1 TCGATAGTGATATTCGAGTTTC-TTCGGTGGTGATATCCGAAGTCATTTGCATATTCTCGATGGT
* * *
7434783 GATATCCGAGTGA-TAAGGTTTGATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTCGGTG
65 GATATCCGAGT-ATTAAGGCTTGAATTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTG
* * * * ** *
7434847 ATGATATTCGAAGTCATTTGCATA-TCTTCGAG-GGTGATATCCAAGTATTAAGGCTTAAAGTAT
129 ATGATATCCGAAGTCATTTGCATATTC-TCG-GTGGTGATATCCGAGTGTTAAGGTTTAATTTAC
* * * *
7434910 ATTTT-TTCGATAGTGATATTCGAGT-TT----CTTTCAGTGGCGATATC
192 ATTTTCTT-GATAGTGATATCCGAGTGTTAAAACTTT-AATTGC-ATTTC
* * * *
7434954 -CGA-AGTCAT-TT-GCA-TATTC-TCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTT
1 TCGATAGTGATATTCG-AGT-TTCTTCGGTGGTGATATCCGA-AG-TCA--TTTG---CATA--T
* ** * * * * *
7435013 TCTCGACGGTGATATCTAAGTGTTAAAGCTTCAATTGCATTTTCTCGATAGTGATATTCGAGTTT
55 TCTCGATGGTGATATCCGAGTATTAAGGCTTGAATTACATTTTCTCGATGGTGATATTCGAGTTT
* * * ** *
7435078 CCTTCGGTGGTGATATCCGAAGTCATTTGCATATTCTTGATAATGATATCCGAGTGTTAAGCTTT
120 CCTTCGGTGATGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTT
* * * * *
7435143 AATTTGCATTTTCTCGGTAGTGATATCCGAGAGTTAAAGCTTTAATTGCATTTTC
185 AATTTACATTTTCTTGATAGTGATATCCGAGTGTTAAAACTTTAATTGCA-TTTC
* * * * * *
7435198 TTGATGGTGATATTCGAGTTTCCTTCGATGGTGATATCTGAAGTCATTTACATATTCTCGGTGGT
1 TCGATAGTGATATTCGAGTTT-CTTCGGTGGTGATATCCGAAGTCATTTGCATATTCTCGATGGT
* * * * * * *
7435263 GATATCCGAGTGTTAAAGG-TTGATTTGCATATCCTTCGATGGTGATATTCGAGTTTCTTTCAGT
65 GATATCCGAGTATT-AAGGCTTGAATTACATTTTC-TCGATGGTGATATTCGAGTTTCCTTCGGT
** * * *
7435327 GGCGATATCCAAAGTCA-TTGCATATTCT-GGATGGTGATATCTGAGTGTTAAGGTTTGATTTAC
128 GATGATATCCGAAGTCATTTGCATATTCTCGG-TGGTGATATCCGAGTGTTAAGGTTTAATTTAC
* *
7435390 ATTTTCTTGATAGTGATATTCGAATGTTAAAA
192 ATTTTCTTGATAGTGATATCCGAGTGTTAAAA
7435422 GATCATTTAC
Statistics
Matches: 557, Mismatches: 108, Indels: 78
0.75 0.15 0.10
Matches are distributed among these distances:
231 17 0.03
232 3 0.01
233 8 0.01
234 4 0.01
235 11 0.02
236 5 0.01
237 2 0.00
238 3 0.01
239 7 0.01
240 393 0.71
241 54 0.10
242 3 0.01
243 1 0.00
244 7 0.01
245 9 0.02
246 4 0.01
247 7 0.01
248 4 0.01
249 15 0.03
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (238 bp):
TCGATAGTGATATTCGAGTTTCTTCGGTGGTGATATCCGAAGTCATTTGCATATTCTCGATGGTG
ATATCCGAGTATTAAGGCTTGAATTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGAT
GATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTAATTTACATTT
TCTTGATAGTGATATCCGAGTGTTAAAACTTTAATTGCATTTC
Found at i:7434819 original size:99 final size:98
Alignment explanation
Indices: 7434680--7435027 Score: 432
Period size: 99 Copynumber: 3.5 Consensus size: 98
7434670 ATTTTCTTGA
* ** *
7434680 TGGTGATATCCGAGTGTTAAAACTTTAATTT-CATGTTCTCGATGGTGATATTCGAGTTTCTTTC
1 TGGTGATATCCGAGTGAT-AAGGTTTAATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTC
*
7434744 GGTGGTGATATCCGAAGTCATTTGCATATTATTGG
65 GGTGGTGATATCCGAAGTCATTTGCATATT-TCGG
*
7434779 TGGTGATATCCGAGTGATAAGGTTTGATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTCG
1 TGGTGATATCCGAGTGATAAGGTTTAATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTCG
* *
7434844 GTGATGATATTCGAAGTCATTTGCATATCTTCGAG
66 GTGGTGATATCCGAAGTCATTTGCATAT-TTCG-G
* * ** * * *
7434879 -GGTGATATCCAAGT-ATTAAGGCTTAAAGTATATTTTTTCGATAGTGATATTCGAGTTTCTTTC
1 TGGTGATATCCGAGTGA-TAAGGTTTAATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTC
* *
7434942 AGTGGCGATATCCGAAGTCATTTGCATATTCTCGG
65 GGTGGTGATATCCGAAGTCATTTGCATATT-TCGG
* * * *
7434977 TGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTCGACGGTGATAT
1 TGGTGATATCCGAGTGATAAGGTTTAATTTACATTTTCTCGATGGTGATAT
7435028 CTAAGTGTTA
Statistics
Matches: 213, Mismatches: 29, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
98 12 0.06
99 199 0.93
100 2 0.01
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (98 bp):
TGGTGATATCCGAGTGATAAGGTTTAATTTACATTTTCTCGATGGTGATATTCGAGTTTCTTTCG
GTGGTGATATCCGAAGTCATTTGCATATTTCGG
Found at i:7434857 original size:339 final size:339
Alignment explanation
Indices: 7434221--7435173 Score: 1320
Period size: 339 Copynumber: 2.8 Consensus size: 339
7434211 GAGTGTTGAA
*
7434221 GCTTGAATTACATTTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGGTGATATCTGAAGTCAT
1 GCTTAAATTACA-TTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGGTGATATCTGAAGTCAT
* * * * * * * *
7434286 TTGCATATTCTCGATGGTGATATTCAAGTGTTAAAGTTTGATTTGTATTTT-TTTATGATAATAT
65 TTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTTGATGGTGATAT
* * *
7434350 CAGAGTGTTAAAGCTTCAATTAT-ATGTTCTCGATGTTGATATTCGAGTTTCTTTTGATGGTGAT
130 CAGAGTGTTAAAGCTTCAATT-TCATGTTCTCGATGGTGATATTCGAGTTTCTTTCGGTGGTGAT
* * ** * * *
7434414 ATCCGAAGTTATTTGTATATTCTCAATGGTGATATCTGAGTGATAAGGTTTGATTTGTATTTTTT
194 ATCCGAAGTCATTTGCATATTCTTGATGGTGATATCCGAGTGATAAGGTTTGATTTGCATTTTCT
*
7434479 CGATAGTGATATTCGAGTTTCGTTCAGTGACATTATTCGAAGTCATTTGCATATCTTCAATGGTG
259 CGATAGTGATATTCGAGTTTCGTTCAGTGACATTATTCGAAGTCATTTGCATATCTTCAAGGGTG
*
7434544 ACATCCGAGTATTAAG
324 ACATCCAAGTATTAAG
* * * * * *
7434560 GCTTAAATTACATTTTTTGGATGGTGATATTCAAGTTTCCTTCGGTGATGATATTTGAAGTCATT
1 GCTTAAATTACATTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGGTGATATCTGAAGTCATT
*
7434625 TGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTTGATGGTGATATC
66 TGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTTGATGGTGATATC
* * *
7434690 CGAGTGTTAAAACTTTAATTTCATGTTCTCGATGGTGATATTCGAGTTTCTTTCGGTGGTGATAT
131 AGAGTGTTAAAGCTTCAATTTCATGTTCTCGATGGTGATATTCGAGTTTCTTTCGGTGGTGATAT
* * *
7434755 CCGAAGTCATTTGCATATTATTGGTGGTGATATCCGAGTGATAAGGTTTGATTTACATTTTCTCG
196 CCGAAGTCATTTGCATATTCTTGATGGTGATATCCGAGTGATAAGGTTTGATTTGCATTTTCTCG
* * * * *
7434820 ATGGTGATATTCGAGTTTCTTTCGGTGATGA-TATTCGAAGTCATTTGCATATCTTCGAGGGTGA
261 ATAGTGATATTCGAGTTTCGTTCAGTGA-CATTATTCGAAGTCATTTGCATATCTTCAAGGGTGA
*
7434884 TATCCAAGTATTAAG
325 CATCCAAGTATTAAG
* * * * *
7434899 GCTTAAAGTATATTTTTTCGATAGTGATATTCGAGTTTCTTTCAGTGGCGATATCCGAAGTCATT
1 GCTTAAATTACATTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGGTGATATCTGAAGTCATT
* *
7434964 TGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTCGACGGTGATATC
66 TGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTTGATGGTGATATC
* * * *
7435029 TA-AGTGTTAAAGCTTCAATTGCATTTTCTCGATAGTGATATTCGAGTTTCCTTCGGTGGTGATA
131 -AGAGTGTTAAAGCTTCAATTTCATGTTCTCGATGGTGATATTCGAGTTTCTTTCGGTGGTGATA
** * * *
7435093 TCCGAAGTCATTTGCATATTCTTGATAATGATATCCGAGTGTTAAGCTTTAATTTGCATTTTCTC
195 TCCGAAGTCATTTGCATATTCTTGATGGTGATATCCGAGTGATAAGGTTTGATTTGCATTTTCTC
* *
7435158 GGTAGTGATATCCGAG
260 GATAGTGATATTCGAG
7435174 AGTTAAAGCT
Statistics
Matches: 538, Mismatches: 72, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
338 92 0.17
339 445 0.83
340 1 0.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (339 bp):
GCTTAAATTACATTTTTTCGATGGTGATATTCGAGTTTCTTTCAGTGGTGATATCTGAAGTCATT
TGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGATTTATATTTTCTTGATGGTGATATC
AGAGTGTTAAAGCTTCAATTTCATGTTCTCGATGGTGATATTCGAGTTTCTTTCGGTGGTGATAT
CCGAAGTCATTTGCATATTCTTGATGGTGATATCCGAGTGATAAGGTTTGATTTGCATTTTCTCG
ATAGTGATATTCGAGTTTCGTTCAGTGACATTATTCGAAGTCATTTGCATATCTTCAAGGGTGAC
ATCCAAGTATTAAG
Found at i:7435066 original size:141 final size:140
Alignment explanation
Indices: 7434874--7435288 Score: 526
Period size: 141 Copynumber: 2.9 Consensus size: 140
7434864 TTGCATATCT
* * * * ** * *
7434874 TCGAGGGTGATATCCAAGTATTAAGGCTTAAAGTATATTTTTTCGATAGTGATATTCGAGTTTCT
1 TCGACGGTGATATCCAAGTGTTAAAGCTTAAATTGCATTTTCTCGATAGTGATATTCGAGTTTCC
*
7434939 TTCAGTGGCGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGA
66 TTC-GTGGTGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGA
*
7435004 TTTATATTTTC
130 TTTACATTTTC
* *
7435015 TCGACGGTGATATCTAAGTGTTAAAGCTTCAATTGCATTTTCTCGATAGTGATATTCGAGTTTCC
1 TCGACGGTGATATCCAAGTGTTAAAGCTTAAATTGCATTTTCTCGATAGTGATATTCGAGTTTCC
* * ** * *
7435080 TTCGGTGGTGATATCCGAAGTCATTTGCATATTCTTGATAATGATATCCGAGTGTTAAGCTTTAA
66 TTC-GTGGTGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGA
*
7435145 TTTGCATTTTC
130 TTTACATTTTC
*** * * * * *
7435156 TCGGTAGTGATATCCGAGAGTTAAAGCTTTAATTGCATTTTCTTGATGGTGATATTCGAGTTTCC
1 TCGACGGTGATATCCAAGTGTTAAAGCTTAAATTGCATTTTCTCGATAGTGATATTCGAGTTTCC
* *
7435221 TTCGATGGTGATATCTGAAGTCATTTACATATTCTCGGTGGTGATATCCGAGTGTTAAAGG-TTG
66 TTCG-TGGTGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTT-AAGGTTTG
7435285 ATTT
129 ATTT
7435289 GCATATCCTT
Statistics
Matches: 235, Mismatches: 37, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
140 1 0.00
141 231 0.98
142 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (140 bp):
TCGACGGTGATATCCAAGTGTTAAAGCTTAAATTGCATTTTCTCGATAGTGATATTCGAGTTTCC
TTCGTGGTGATATCCGAAGTCATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAGGTTTGAT
TTACATTTTC
Found at i:7435148 original size:42 final size:43
Alignment explanation
Indices: 7435102--7435216 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
7435092 ATCCGAAGTC
* *
7435102 ATTTGCATATTCTTGATAATGATATCCGAGTGTT-AAGCTTTA
1 ATTTGCATTTTCTTGATAGTGATATCCGAGTGTTAAAGCTTTA
* * *
7435144 ATTTGCATTTTCTCGGTAGTGATATCCGAGAGTTAAAGCTTTA
1 ATTTGCATTTTCTTGATAGTGATATCCGAGTGTTAAAGCTTTA
* *
7435187 A-TTGCATTTTCTTGATGGTGATATTCGAGT
1 ATTTGCATTTTCTTGATAGTGATATCCGAGT
7435217 TTCCTTCGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 53 0.85
43 9 0.15
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (43 bp):
ATTTGCATTTTCTTGATAGTGATATCCGAGTGTTAAAGCTTTA
Found at i:7435256 original size:99 final size:99
Alignment explanation
Indices: 7435144--7435412 Score: 330
Period size: 99 Copynumber: 2.7 Consensus size: 99
7435134 TTAAGCTTTA
* * * * *
7435144 ATTTGCATTTTCTCGGTAGTGATATCCGAGAGTTAAAGCTTTAATTGCATTTTCTTGATGGTGAT
1 ATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAAGGTTTATTTGCATTTTCTTGATGGTGAT
* **
7435209 ATTCGAGTTTCCTTC-GATGGTGATATCTGAAGTC
66 ATTCGAGTTTCCTTCAG-TGGCGATATCCAAAGTC
* * * *
7435243 ATTTACATATTCTCGGTGGTGATATCCGAGTGTTAAAGGTTGATTTGCATATCCTTCGATGGTGA
1 ATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAAGGTTTATTTGCATTTTCTT-GATGGTGA
*
7435308 TATTCGAGTTTCTTTCAGTGGCGATATCCAAAGTC
65 TATTCGAGTTTCCTTCAGTGGCGATATCCAAAGTC
* * *
7435343 A-TTGCATATTCT-GGATGGTGATATCTGAGTGTT-AAGGTTTGATTTACATTTTCTTGATAGTG
1 ATTTGCATATTCTCGG-TGGTGATATCCGAGTGTTAAAGGTTT-ATTTGCATTTTCTTGATGGTG
7435405 ATATTCGA
64 ATATTCGA
7435413 ATGTTAAAAG
Statistics
Matches: 146, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
98 22 0.15
99 85 0.58
100 38 0.26
101 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (99 bp):
ATTTGCATATTCTCGGTGGTGATATCCGAGTGTTAAAGGTTTATTTGCATTTTCTTGATGGTGAT
ATTCGAGTTTCCTTCAGTGGCGATATCCAAAGTC
Found at i:7435718 original size:49 final size:48
Alignment explanation
Indices: 7435568--7436081 Score: 462
Period size: 48 Copynumber: 10.7 Consensus size: 48
7435558 CTAGGATAGG
** * **
7435568 TTTTTCAAGAT-ATGATTTTAAAGTTGTTGAGTATATG-TTGAGATAAGC-
1 TTTTTCAAGATGA--ATTTTAAAGTTGTTGAGCCTCTGCTT-AGAGGAGCT
* * * *
7435616 TTTTTCAAGATAAGAATTTTTAAAGTTGTTAAGCTTATG-TTGAGCGGAGCT
1 TTTTTCAAGAT--GAA-TTTTAAAGTTGTTGAGCCTCTGCTT-AGAGGAGCT
* * * * * *
7435667 TTTTTCAAGATAGAATTTTAAAGTTGTTAAACCTCTACTTAAATGAAC-
1 TTTTTCAAGAT-GAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
* ** * *
7435715 TTTTTCAAAATGAGATTTTAAAGTTGTAAAGCCTCTGCTGAGAAGAG-T
1 TTTTTCAAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
* * * * *
7435763 CTCTTT-AA-AT---TTTCAAAAGTCGTTGAGCCTCTGCTTAAAGAAG-T
1 -TTTTTCAAGATGAATTT-TAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
*
7435807 TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCC
1 TTTTTCAAGATGAA-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
* * *
7435856 TTTTCCAAGATGAATTTTAAAGTTGTTGAGCCTCTGTTTAGAGGGGCT
1 TTTTTCAAGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
* *
7435904 TTTTTCAAGATGAATTTTTAAAATTGTTGAGCCTCTACTTAGAGGAGC-
1 TTTTTCAAGATGAA-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
* * * *
7435952 TTTTTCAAGATAAATTTTTAAAGTT-TTGGGCCTTTACTTAGAGGAGCT
1 TTTTTCAAGATGAA-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
*
7436000 TTTTTCAAGATGAATTTTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCT
1 TTTTTCAAGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
*
7436048 TTTTTCAAGATGAATTTTTAAAGTTGTTAAGCCT
1 TTTTTCAAGATGAA-TTTTAAAGTTGTTGAGCCT
7436082 TTGATTGGAG
Statistics
Matches: 389, Mismatches: 56, Indels: 41
0.80 0.12 0.08
Matches are distributed among these distances:
43 7 0.02
44 24 0.06
45 2 0.01
47 34 0.09
48 187 0.48
49 90 0.23
50 33 0.08
51 12 0.03
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.40
Consensus pattern (48 bp):
TTTTTCAAGATGAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
Found at i:7435924 original size:97 final size:97
Alignment explanation
Indices: 7435616--7436081 Score: 470
Period size: 97 Copynumber: 4.8 Consensus size: 97
7435606 TGAGATAAGC
* * * * *
7435616 TTTTTCAAGATAAGAATTTTTAAAGTTGTTAAGCTTATG-TTGAGCGGAGCTTTTTTCAAGATAG
1 TTTTTCAAGAT--GAATTTTTAAAGTTGTTGAGCCTCTGCTT-AGAGGAGCCTTTTTCAAGAT-G
* * * *
7435680 AATTTTAAAGTTGTTAAACCTCTACTTAAATGAAC-
62 AATTTTAAAGTTGTTGAGCCTCTACTTAAAGGAGCT
* ** * * * *
7435715 TTTTTCAAAATGAGA-TTTTAAAGTTGTAAAGCCTCTGCTGAGAAGAGTCTCTTT-AA-AT---T
1 TTTTTCAAGATGA-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGAAT
* * * *
7435774 TTCAAAAGTCGTTGAGCCTCTGCTTAAAGAAG-T
65 TT-TAAAGTTGTTGAGCCTCTACTTAAAGGAGCT
*
7435807 TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTCCAAGATGAATT
1 TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGAATT
** * *
7435872 TTAAAGTTGTTGAGCCTCTGTTTAGAGGGGCT
66 TTAAAGTTGTTGAGCCTCTACTTAAAGGAGCT
* * *
7435904 TTTTTCAAGATGAATTTTTAAAATTGTTGAGCCTCTACTTAGAGGAG-CTTTTTCAAGATAAATT
1 TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGAA-T
* * *
7435968 TTTAAAGTT-TTGGGCCTTTACTTAGAGGAGCT
65 TTTAAAGTTGTTGAGCCTCTACTTAAAGGAGCT
* *
7436000 TTTTTCAAGATGAA-TTTTAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTTTTCAAGATGAATT
1 TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGAA-T
*
7436064 TTTAAAGTTGTTAAGCCT
65 TTTAAAGTTGTTGAGCCT
7436082 TTGATTGGAG
Statistics
Matches: 305, Mismatches: 48, Indels: 30
0.80 0.13 0.08
Matches are distributed among these distances:
91 4 0.01
92 65 0.21
93 2 0.01
94 2 0.01
95 31 0.10
96 94 0.31
97 95 0.31
98 2 0.01
99 10 0.03
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (97 bp):
TTTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTTCAAGATGAATT
TTAAAGTTGTTGAGCCTCTACTTAAAGGAGCT
Found at i:7436119 original size:144 final size:144
Alignment explanation
Indices: 7435826--7436122 Score: 373
Period size: 144 Copynumber: 2.1 Consensus size: 144
7435816 ATGAATTTTT
*
7435826 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTCCAAGATGAATTTTAAAGTTGTTGAGCCTCT
1 AAAGTT-TTGAGCCTCTACTTAGAGGAGCCTTTTCCAAGATGAATTTTAAAGTTGTTGAGCCTCT
* * * **
7435891 GTTTAGAGGGGCTTTTTTCAAGATGAATTTTTAAAATTGTTGAGCCTCTACTTAGAGGAGCTTTT
65 GTTTAGAGGAGCTTTTTTCAAGATGAATTTTTAAAATTGTTAAGCCTCTACTTAGAGAAGCTTCC
*****
7435956 TCAAGATAAATTTTT
130 TCAAGATAAAAAAAA
* * * *
7435971 AAAGTTTTGGGCCTTTACTTAGAGGAGCTTTTTTCAAGATGAATTTTAAAGTTGTTGAGCCTCTG
1 AAAGTTTTGAGCCTCTACTTAGAGGAGCCTTTTCCAAGATGAATTTTAAAGTTGTTGAGCCTCTG
* * *
7436036 TTTAGAGGAGCTTTTTTCAAGATGAATTTTTAAAGTTGTTAAGCCTTTGA-TTGGAGAAGCTTCC
66 TTTAGAGGAGCTTTTTTCAAGATGAATTTTTAAAATTGTTAAGCCTCT-ACTTAGAGAAGCTTCC
**
7436100 T-AATTTGAAAAAAAA
130 TCAAGAT-AAAAAAAA
7436115 AAAGTTTT
1 AAAGTTTT
7436123 ATGCTCAATG
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
143 3 0.02
144 120 0.92
145 7 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.39
Consensus pattern (144 bp):
AAAGTTTTGAGCCTCTACTTAGAGGAGCCTTTTCCAAGATGAATTTTAAAGTTGTTGAGCCTCTG
TTTAGAGGAGCTTTTTTCAAGATGAATTTTTAAAATTGTTAAGCCTCTACTTAGAGAAGCTTCCT
CAAGATAAAAAAAA
Found at i:7436253 original size:11 final size:10
Alignment explanation
Indices: 7436237--7436263 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7436227 TATTTATTTA
7436237 TTTTTTTTTC
1 TTTTTTTTTC
7436247 TTTTTTTTTC
1 TTTTTTTTTC
7436257 TTTTTTT
1 TTTTTTT
7436264 GGCAGCGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:7439231 original size:9 final size:9
Alignment explanation
Indices: 7439194--7439248 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
7439184 ACCACCTCTT
*
7439194 CTTCATCTC
1 CTTCTTCTC
7439203 CTTC-TCTC
1 CTTCTTCTC
7439211 CTTCTCCTTCTC
1 C-T-T-CTTCTC
*
7439223 CTACTTCTC
1 CTTCTTCTC
7439232 CTTCTTCTC
1 CTTCTTCTC
7439241 CTTCTTCT
1 CTTCTTCT
7439249 GTTTCCTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 5 0.12
9 27 0.68
10 1 0.03
11 2 0.05
12 5 0.12
ACGTcount: A:0.04, C:0.45, G:0.00, T:0.51
Consensus pattern (9 bp):
CTTCTTCTC
Found at i:7439244 original size:15 final size:15
Alignment explanation
Indices: 7439199--7439245 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
7439189 CTCTTCTTCA
7439199 TCTCCTTC-TCTCCT
1 TCTCCTTCTTCTCCT
* *
7439213 TCTCCTTCTCCTACT
1 TCTCCTTCTTCTCCT
7439228 TCTCCTTCTTCTCCT
1 TCTCCTTCTTCTCCT
7439243 TCT
1 TCT
7439246 TCTGTTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 8 0.29
15 20 0.71
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (15 bp):
TCTCCTTCTTCTCCT
Found at i:7450807 original size:2 final size:2
Alignment explanation
Indices: 7450800--7450829 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7450790 ATGGAGACAT
*
7450800 GA GA GA GA GA AA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7450830 ATCGTGGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7451341 original size:25 final size:25
Alignment explanation
Indices: 7451311--7451363 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
7451301 GAGAATAAAC
7451311 AAAAACAATAGGTAAAATA-AAT-GCT
1 AAAAACAAT--GTAAAATATAATAGCT
*
7451336 AAAAACGATGTAAAATATAATAGCT
1 AAAAACAATGTAAAATATAATAGCT
7451361 AAA
1 AAA
7451364 CTAAAGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 8 0.32
24 3 0.12
25 14 0.56
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAAACAATGTAAAATATAATAGCT
Found at i:7452722 original size:24 final size:25
Alignment explanation
Indices: 7452686--7452733 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
7452676 TTGGCAAGTA
*
7452686 AGAAAATACAGGAAA-AAGAAATGC
1 AGAAAATACAGGAAACAAAAAATGC
7452710 AGAAAATTA-AGGAAACAAAAAATG
1 AGAAAA-TACAGGAAACAAAAAATG
7452734 TAAATCCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.65, C:0.06, G:0.19, T:0.10
Consensus pattern (25 bp):
AGAAAATACAGGAAACAAAAAATGC
Found at i:7454797 original size:14 final size:14
Alignment explanation
Indices: 7454778--7454811 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
7454768 TCCAAAATAT
7454778 ATTAATTTTTTAAA
1 ATTAATTTTTTAAA
7454792 ATTAATTTTTTAAA
1 ATTAATTTTTTAAA
7454806 ATTAAT
1 ATTAAT
7454812 AAGATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTAATTTTTTAAA
Found at i:7455061 original size:59 final size:58
Alignment explanation
Indices: 7454907--7455194 Score: 162
Period size: 59 Copynumber: 4.9 Consensus size: 58
7454897 TTTGGCTTTG
* * * * * * *
7454907 TTTTAAAAATTCTTTTCAAAACTTCTAACC-TTCAATAGA-TAGTTAAG--ATTTTAT
1 TTTTCAAAATTCTTTTCAAAATTTCAAACCTTTCAATATATTGGTAAAGTTTTTTTAT
*** * *
7454961 TTTTCCAAAA-AAATTTCTAAATTTCAAACC-TTCTAACATATTGGTAAAGTTTTTTTAT
1 TTTT-CAAAATTCTTTTCAAAATTTCAAACCTTTC-AATATATTGGTAAAGTTTTTTTAT
*
7455019 TTTTGCAAAATTCTTTTCAAAATTTCAAACCTTTCAATATATTGGTAAGGTTTTATTTTTAT
1 TTTT-CAAAATTCTTTTCAAAATTTCAAACCTTTCAATATATTGGTAAAG--TT-TTTTTAT
* *** * * * *
7455081 TTTTCAAAAATTATTTTTTTTTAATTTCAAAACCCTCCAATATGTT-ATAAAG-TTTTTTAT
1 TTTTC-AAAA-T-TCTTTTCAAAATTTC-AAACCTTTCAATATATTGGTAAAGTTTTTTTAT
* * * * * *
7455141 TTTTCAAATGTTGTTTT-AAAATTATCATACCTTTCAATATGTTAGTAAAATTTT
1 TTTTCAAA-ATTCTTTTCAAAATT-TCAAACCTTTCAATATATTGGTAAAGTTTT
7455195 ATTTTTTATC
Statistics
Matches: 179, Mismatches: 37, Indels: 31
0.72 0.15 0.13
Matches are distributed among these distances:
54 21 0.12
55 8 0.04
56 6 0.03
57 18 0.10
58 26 0.15
59 36 0.20
60 15 0.08
61 4 0.02
62 15 0.08
63 1 0.01
64 15 0.08
65 14 0.08
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (58 bp):
TTTTCAAAATTCTTTTCAAAATTTCAAACCTTTCAATATATTGGTAAAGTTTTTTTAT
Found at i:7455233 original size:16 final size:17
Alignment explanation
Indices: 7455198--7455236 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
7455188 AAATTTTATT
*
7455198 TTTTATCTTCAAAAATTA
1 TTTT-TCTTCAAAAAATA
7455216 TTTTTCTT-AAAAAATA
1 TTTTTCTTCAAAAAATA
7455232 TTTTT
1 TTTTT
7455237 ATTTTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 4 0.20
18 4 0.20
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTCTTCAAAAAATA
Found at i:7455954 original size:15 final size:16
Alignment explanation
Indices: 7455934--7455966 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7455924 TTTAGTTTCA
7455934 AAAACAAA-TAAAAAT
1 AAAACAAAGTAAAAAT
*
7455949 AAAACAAAGTAAAGAT
1 AAAACAAAGTAAAAAT
7455965 AA
1 AA
7455967 TTAAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAACAAAGTAAAAAT
Found at i:7455996 original size:21 final size:21
Alignment explanation
Indices: 7455949--7456000 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
7455939 AAATAAAAAT
*
7455949 AAAACAAAGTAAAGATAATTAA
1 AAAATAAA-TAAAGATAATTAA
7455971 AAAATAAATAAAGAT-ATATAA
1 AAAATAAATAAAGATAAT-TAA
*
7455992 GAAATAAAT
1 AAAATAAAT
7456001 CACTAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 18 0.67
22 7 0.26
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (21 bp):
AAAATAAATAAAGATAATTAA
Found at i:7457563 original size:33 final size:33
Alignment explanation
Indices: 7457526--7457612 Score: 165
Period size: 33 Copynumber: 2.6 Consensus size: 33
7457516 TGCAAGGTAT
*
7457526 GCAATTTACAGGAAATGCAAGTTTGTGTGACGG
1 GCAATTTACCGGAAATGCAAGTTTGTGTGACGG
7457559 GCAATTTACCGGAAATGCAAGTTTGTGTGACGG
1 GCAATTTACCGGAAATGCAAGTTTGTGTGACGG
7457592 GCAATTTACCGGAAATGCAAG
1 GCAATTTACCGGAAATGCAAG
7457613 CGCACGTGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (33 bp):
GCAATTTACCGGAAATGCAAGTTTGTGTGACGG
Found at i:7458557 original size:2 final size:2
Alignment explanation
Indices: 7458550--7458581 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7458540 ACGTATGAGC
7458550 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7458582 GTATGTACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7461234 original size:27 final size:27
Alignment explanation
Indices: 7461193--7461255 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
7461183 GCGAGAGGAA
*
7461193 GAGAA-AGGATAGGGAAGAAGGGGGAG
1 GAGAAGAGGATAGGGAAGAAGGCGGAG
* * *
7461219 GAGGAGAGGATGGGGAAGGAGGCGGAG
1 GAGAAGAGGATAGGGAAGAAGGCGGAG
7461246 GAGAAGAGGA
1 GAGAAGAGGA
7461256 ATTGAGTGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.38, C:0.02, G:0.57, T:0.03
Consensus pattern (27 bp):
GAGAAGAGGATAGGGAAGAAGGCGGAG
Found at i:7468562 original size:25 final size:27
Alignment explanation
Indices: 7468534--7468587 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
7468524 TCTTGAGTTA
*
7468534 TTTTTT-GT-AAATAGATCTTTATATT
1 TTTTTTAGTCAAATAAATCTTTATATT
* *
7468559 TTTTTTATTCAAATAAATTTTTATATT
1 TTTTTTAGTCAAATAAATCTTTATATT
7468586 TT
1 TT
7468588 AATTTGTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 17 0.71
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (27 bp):
TTTTTTAGTCAAATAAATCTTTATATT
Found at i:7468604 original size:30 final size:27
Alignment explanation
Indices: 7468542--7468612 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 27
7468532 TATTTTTTGT
* * *
7468542 AAATAGATCTTTATATTTTTTTTATTC
1 AAATAAATTTTTATATTTTTTTTATCC
7468569 AAATAAATTTTTATATTTTAATTTGTATCC
1 AAATAAATTTTTATATTTT--TTT-TATCC
7468599 AAATAAATTTTTAT
1 AAATAAATTTTTAT
7468613 TTAAATGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 17 0.45
29 3 0.08
30 18 0.47
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (27 bp):
AAATAAATTTTTATATTTTTTTTATCC
Found at i:7474700 original size:1 final size:1
Alignment explanation
Indices: 7474694--7474726 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
7474684 TGGATATCAT
*
7474694 AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7474727 CGAGATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:7476148 original size:21 final size:21
Alignment explanation
Indices: 7476109--7476147 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7476099 TCCTACTTGA
7476109 AATTTTATTTCTAATTTTTAT
1 AATTTTATTTCTAATTTTTAT
*
7476130 AATTTT-TTTGTAATTTTT
1 AATTTTATTTCTAATTTTT
7476148 TTATTACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (21 bp):
AATTTTATTTCTAATTTTTAT
Found at i:7477827 original size:13 final size:13
Alignment explanation
Indices: 7477809--7477834 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7477799 TAATACTAAA
7477809 TTAAATTTAAATT
1 TTAAATTTAAATT
7477822 TTAAATTTAAATT
1 TTAAATTTAAATT
7477835 CAATAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAAATTTAAATT
Found at i:7482144 original size:34 final size:34
Alignment explanation
Indices: 7482076--7482145 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
7482066 TTTTAATTAA
* **
7482076 TTATTTAATTTTATATTAATATATATTAATATAT
1 TTATTTAATTTTATATTAACATATAAAAATATAT
*
7482110 TTATTTAATTTTATATTTACATA-AAAAATAATAT
1 TTATTTAATTTTATATTAACATATAAAAAT-ATAT
7482144 TT
1 TT
7482146 TATATTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 4 0.13
34 27 0.87
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (34 bp):
TTATTTAATTTTATATTAACATATAAAAATATAT
Found at i:7482169 original size:25 final size:26
Alignment explanation
Indices: 7482111--7482169 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
7482101 TTAATATATT
*
7482111 TATTTAATTTTATATTTACATAAAAA
1 TATTTTATTTTATATTTACATAAAAA
**
7482137 -ATAATATTTTATATTTA-A-AAATAA
1 TATTTTATTTTATATTTACATAAA-AA
7482161 TATTTTATT
1 TATTTTATT
7482170 AATTTATAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.12
24 3 0.12
25 20 0.77
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TATTTTATTTTATATTTACATAAAAA
Found at i:7483641 original size:17 final size:18
Alignment explanation
Indices: 7483619--7483660 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
7483609 AAAAATGCTT
*
7483619 TTTTATTATTTATTTA-A
1 TTTTATTATTTATATATA
7483636 TTTTA-TATTTATATATA
1 TTTTATTATTTATATATA
7483653 TTTTATTA
1 TTTTATTA
7483661 ATAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 9 0.41
17 11 0.50
18 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTATTATTTATATATA
Found at i:7485929 original size:2 final size:2
Alignment explanation
Indices: 7485922--7485956 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7485912 TAAACATCTC
*
7485922 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7485957 GTAACACTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7488709 original size:65 final size:65
Alignment explanation
Indices: 7488640--7488765 Score: 189
Period size: 65 Copynumber: 1.9 Consensus size: 65
7488630 TCCAAACGCC
* * **
7488640 TTTAATATTCCCAACGATAAATTTTAATTGTCGAATTATTGAAGGTGGCTGTATCCAAAAATGCA
1 TTTAATATTCCCAAAGATAAATTTTAATTGTCGAATTATTGAAGGCGGCCATATCCAAAAATGCA
* * *
7488705 TTTAATATTTCCAAAGATAAATTTTAATTGTCGGATTATTGGAGGCGGCCATATCCAAAAA
1 TTTAATATTCCCAAAGATAAATTTTAATTGTCGAATTATTGAAGGCGGCCATATCCAAAAA
7488766 CGCCTTCATA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (65 bp):
TTTAATATTCCCAAAGATAAATTTTAATTGTCGAATTATTGAAGGCGGCCATATCCAAAAATGCA
Found at i:7489116 original size:35 final size:36
Alignment explanation
Indices: 7489049--7489116 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
7489039 ATATGTGAAG
*
7489049 TCAGTTGTAGGTTTATGCCCAAAAAAATATTTGCTA
1 TCAGTTGTAGATTTATGCCCAAAAAAATATTTGCTA
*
7489085 TCAGTTGTATATTTATGCCC-AAAAAATATTTG
1 TCAGTTGTAGATTTATGCCCAAAAAAATATTTG
7489117 GTTTATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 12 0.40
36 18 0.60
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (36 bp):
TCAGTTGTAGATTTATGCCCAAAAAAATATTTGCTA
Found at i:7493977 original size:13 final size:12
Alignment explanation
Indices: 7493945--7493983 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
7493935 GGAGCATGCC
7493945 AAAAAAAA-AAA
1 AAAAAAAAGAAA
7493956 AAAAAAAAGCAAA
1 AAAAAAAAG-AAA
7493969 AAAAAAAAGAGAA
1 AAAAAAAAGA-AA
7493982 AA
1 AA
7493984 CATTTTATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.32
12 1 0.04
13 16 0.64
ACGTcount: A:0.90, C:0.03, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:7494479 original size:21 final size:22
Alignment explanation
Indices: 7494439--7494479 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7494429 TGAATTTGCT
* *
7494439 TAAAGAAATGGAAAAGATAAAG
1 TAAAAAAATGGAAAAAATAAAG
7494461 TAAAAAAAT-GAAAAAATAA
1 TAAAAAAATGGAAAAAATAA
7494480 GGAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (22 bp):
TAAAAAAATGGAAAAAATAAAG
Found at i:7494508 original size:24 final size:25
Alignment explanation
Indices: 7494472--7494527 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7494462 AAAAAAATGA
7494472 AAAAATAAG-GAAAAT-AAAATAAAG
1 AAAAA-AAGAGAAAATGAAAATAAAG
* *
7494496 AAGAAAAGAGAAAATGAAAATAATG
1 AAAAAAAGAGAAAATGAAAATAAAG
7494521 AAAAAAA
1 AAAAAAA
7494528 AAAAGAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.11
24 10 0.37
25 14 0.52
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (25 bp):
AAAAAAAGAGAAAATGAAAATAAAG
Found at i:7494517 original size:25 final size:24
Alignment explanation
Indices: 7494450--7494527 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 24
7494440 AAAGAAATGG
* *
7494450 AAAAGATAAAGTAAAA-AAATGAAA
1 AAAAGAGAAAATAAAATAAA-GAAA
*
7494474 AAATA-AGGAAAATAAAATAAAGAAG
1 AAA-AGA-GAAAATAAAATAAAGAAA
*
7494499 AAAAGAGAAAATGAAAATAATGAAA
1 AAAAGAGAAAAT-AAAATAAAGAAA
7494524 AAAA
1 AAAA
7494528 AAAAGAAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
24 11 0.25
25 30 0.68
26 3 0.07
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (24 bp):
AAAAGAGAAAATAAAATAAAGAAA
Found at i:7496289 original size:34 final size:36
Alignment explanation
Indices: 7496211--7496302 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 36
7496201 TGCTACTTAT
*
7496211 TTGTTAATATTTGAAATTTACAAATCTTTAACCTATC
1 TTGTGAATATTTGAAATTTACAAATCTTTAACC-ATC
*
7496248 TTGTGAATATTTGAAATTTACAAATCTTTTA-C-TC
1 TTGTGAATATTTGAAATTTACAAATCTTTAACCATC
7496282 TTGTGAAT-TTGTGAAATTTAC
1 TTGTGAATATT-TGAAATTTAC
7496303 GAACCATTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
33 2 0.04
34 20 0.38
36 1 0.02
37 29 0.56
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.47
Consensus pattern (36 bp):
TTGTGAATATTTGAAATTTACAAATCTTTAACCATC
Found at i:7496419 original size:41 final size:41
Alignment explanation
Indices: 7496303--7496421 Score: 141
Period size: 41 Copynumber: 2.9 Consensus size: 41
7496293 TGAAATTTAC
* * *
7496303 GAACCATTTA-TTCTGTTGTGAATCTAGAGTCTTTAAACTGT
1 GAACCATTTACTT-TATTGTGAATCCAGAGTCTTTCAACTGT
* ** * * *
7496344 GAATCATTCCCTCTATTGTGAATTCAAAGTCTTTCAACTGT
1 GAACCATTTACTTTATTGTGAATCCAGAGTCTTTCAACTGT
7496385 GAACCATTTACTTTATTGTGAATCCAGAGTCTTTCAA
1 GAACCATTTACTTTATTGTGAATCCAGAGTCTTTCAA
7496422 TTGTAAATTG
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 61 0.98
42 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (41 bp):
GAACCATTTACTTTATTGTGAATCCAGAGTCTTTCAACTGT
Found at i:7496436 original size:41 final size:41
Alignment explanation
Indices: 7496304--7496453 Score: 138
Period size: 41 Copynumber: 3.7 Consensus size: 41
7496294 GAAATTTACG
* * * * *
7496304 AACCATTTATTCTGTTGTGAATCTAGAGTCTTTAAACTGTG
1 AACCATTTACTCTATTGTGAATCCAGAGTCTTTCAACTGTA
* ** * * *
7496345 AATCATTCCCTCTATTGTGAATTCAAAGTCTTTCAACTGTG
1 AACCATTTACTCTATTGTGAATCCAGAGTCTTTCAACTGTA
* *
7496386 AACCATTTACTTTATTGTGAATCCAGAGTCTTTCAATTGTA
1 AACCATTTACTCTATTGTGAATCCAGAGTCTTTCAACTGTA
*** * *
7496427 AATTGTTTACTCTGTTGTAAATCCAGA
1 AACCATTTACTCTATTGTGAATCCAGA
7496454 ATCCCTCTAA
Statistics
Matches: 86, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (41 bp):
AACCATTTACTCTATTGTGAATCCAGAGTCTTTCAACTGTA
Found at i:7497662 original size:21 final size:21
Alignment explanation
Indices: 7497636--7497787 Score: 103
Period size: 21 Copynumber: 6.9 Consensus size: 21
7497626 TTTATTTACC
*
7497636 TAATATATTTGTTTGCATGAT
1 TAATATATTTATTTGCATGAT
**
7497657 TAATATATTTATTTGTGTGAT
1 TAATATATTTATTTGCATGAT
* *
7497678 TTAT-TAATATATTTGCATGATTAT
1 TAATAT-ATTTATTTGCATG---AT
**
7497702 TAATATATTTATTTATATGAT
1 TAATATATTTATTTGCATGAT
*
7497723 TATATTTAATTTGA-TTGCATGATTAT
1 TA-ATAT-ATTT-ATTTGCATG---AT
*
7497749 TAATATATTTATTTGCATAAT
1 TAATATATTTATTTGCATGAT
*
7497770 T-ATATATTTAATTGCATG
1 TAATATATTTATTTGCATG
7497788 TTTATTTGCA
Statistics
Matches: 101, Mismatches: 18, Indels: 25
0.70 0.12 0.17
Matches are distributed among these distances:
20 16 0.16
21 38 0.38
22 3 0.03
23 10 0.10
24 26 0.26
25 4 0.04
26 4 0.04
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (21 bp):
TAATATATTTATTTGCATGAT
Found at i:7497772 original size:47 final size:47
Alignment explanation
Indices: 7497636--7497774 Score: 167
Period size: 47 Copynumber: 3.0 Consensus size: 47
7497626 TTTATTTACC
** * *
7497636 TAATATATTTGTTTGCATGATTAATATATTTATTTGTGTGATT-TA-T
1 TAATATATTTGCATG-ATTATTAATATATTTATTTGTATGATTATATT
*
7497682 TAATATATTTGCATGATTATTAATATATTTATTTATATGATTATATT
1 TAATATATTTGCATGATTATTAATATATTTATTTGTATGATTATATT
* * *
7497729 TAATTTGA-TTGCATGATTATTAATATATTTATTTGCATAATTATAT
1 TAATAT-ATTTGCATGATTATTAATATATTTATTTGTATGATTATAT
7497775 ATTTAATTGC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
45 24 0.30
46 15 0.19
47 41 0.51
48 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.55
Consensus pattern (47 bp):
TAATATATTTGCATGATTATTAATATATTTATTTGTATGATTATATT
Found at i:7497792 original size:32 final size:32
Alignment explanation
Indices: 7497756--7497818 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
7497746 TATTAATATA
7497756 TTTATTTGCATAATTATATATTTAATTGCATG
1 TTTATTTGCATAATTATATATTTAATTGCATG
*
7497788 TTTATTTGCATTATTATATATTTAATTGCAT
1 TTTATTTGCATAATTATATATTTAATTGCAT
7497819 ATTTTGCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.06, G:0.08, T:0.56
Consensus pattern (32 bp):
TTTATTTGCATAATTATATATTTAATTGCATG
Found at i:7497865 original size:31 final size:31
Alignment explanation
Indices: 7497822--7497885 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
7497812 ATTGCATATT
*
7497822 TTGCATGGTTTATATATTATTATTTACATGA
1 TTGCATGATTTATATATTATTATTTACATGA
*
7497853 TTGCATGATTTATATATTATTATTTGCATGA
1 TTGCATGATTTATATATTATTATTTACATGA
7497884 TT
1 TT
7497886 ATATGTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (31 bp):
TTGCATGATTTATATATTATTATTTACATGA
Found at i:7497896 original size:115 final size:118
Alignment explanation
Indices: 7497713--7498157 Score: 356
Period size: 115 Copynumber: 3.8 Consensus size: 118
7497703 AATATATTTA
7497713 TTTATATGATTA-TATTTA-ATTTGATTGCATGATTATTAATATATTTATTTGCATAATTATATA
1 TTTATAT-ATTATTATTTACA--TGATTGCATGATTATTAATATATTTATTTGCATAATTATATA
* *
7497776 TTTAATTGCATGTTTATTTGCATTATTATATATTTAATTGCATA-T-TTTGCATGG
63 TTTAATTACATGTTTATTTGCATGATTATATATTTAATTGCATATTGTTTGCATGG
* *
7497830 TTTATATATTATTATTTACATGATTGCATGA-T-TT-ATATATTATTATTTGCATGATTATATGT
1 TTTATATATTATTATTTACATGATTGCATGATTATTAATATA-T-TTATTTGCATAATTATATAT
*
7497892 TTAATTACATGTTTATTTGCATGATTATATATTTAATTGCATATTTGTTTTCATGG
64 TTAATTACATGTTTATTTGCATGATTATATATTTAATTGCATA-TTGTTTGCATGG
* * * *
7497948 TTTATATATTTTTATTTGCATGATT--AT-A-TATTTAATTGCATGTTTATTTGCATGATTAT-T
1 TTTATATATTATTATTTACATGATTGCATGATTA-TTAA-T--ATATTTATTTGCATAATTATAT
* * * **
7498008 A-AT-ATT--A---TTATTTGCATGATTATATATTTAATTACATGTCTAATTGCAT-G
62 ATTTAATTACATGTTTATTTGCATGATTATATATTTAATTGCATAT-TGTTTGCATGG
* ***
7498058 ATTAT-TAATTTATTTATTTGTGTGATTGCATGATTATATATTTAATTATATATTTATTTGCATG
1 TTTATAT-A-TTA-TTATTTACATGATTGCATG---AT-TA-TT-A--ATATATTTATTTGCAT-
* *
7498122 ATTTATATATTTAATTGCATGTTTATTTGCATGATT
54 AATTATATATTTAATTACATGTTTATTTGCATGATT
7498158 TACATTGTTA
Statistics
Matches: 268, Mismatches: 23, Indels: 62
0.76 0.07 0.18
Matches are distributed among these distances:
109 1 0.00
110 7 0.03
111 37 0.14
112 12 0.04
113 5 0.02
114 6 0.02
115 62 0.23
116 20 0.07
117 17 0.06
118 35 0.13
119 17 0.06
120 19 0.07
121 7 0.03
122 3 0.01
123 2 0.01
124 3 0.01
126 1 0.00
129 14 0.05
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (118 bp):
TTTATATATTATTATTTACATGATTGCATGATTATTAATATATTTATTTGCATAATTATATATTT
AATTACATGTTTATTTGCATGATTATATATTTAATTGCATATTGTTTGCATGG
Found at i:7497918 original size:20 final size:20
Alignment explanation
Indices: 7497895--7497933 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7497885 TATATGTTTA
* *
7497895 ATTACATGTTTATTTGCATG
1 ATTACATATTTAATTGCATG
*
7497915 ATTATATATTTAATTGCAT
1 ATTACATATTTAATTGCAT
7497934 ATTTGTTTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (20 bp):
ATTACATATTTAATTGCATG
Found at i:7497962 original size:55 final size:56
Alignment explanation
Indices: 7497903--7498124 Score: 241
Period size: 56 Copynumber: 3.8 Consensus size: 56
7497893 TAATTACATG
* * *
7497903 TTTATTTGCATGATTATATATTTAATTGCATATTTGTTTTCATG-GT-TTATATATT
1 TTTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATTATTA-ATATT
*
7497958 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATTATTAATATT
1 TTTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATTATTAATATT
* * * * *
7498014 ATTATTTGCATGATTATATATTTAATTACATGTCTAATTGCATGATTATTAATTTATTTAT
1 TTTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATTATTAA--TA--T-T
* **
7498075 TTGTGTGATTGCATGATTATATATTTAATTATATATTTATTTGCATGATT
1 TT-TAT--TTGCATGATTATATATTTAATTGCATATTTATTTGCATGATT
7498125 TATATATTTA
Statistics
Matches: 143, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
55 41 0.29
56 54 0.38
57 3 0.02
58 2 0.01
60 1 0.01
61 2 0.01
62 2 0.01
64 38 0.27
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (56 bp):
TTTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATTATTAATATT
Found at i:7498006 original size:12 final size:12
Alignment explanation
Indices: 7497959--7498030 Score: 53
Period size: 12 Copynumber: 6.3 Consensus size: 12
7497949 TTATATATTT
7497959 TTATTTGCATGA
1 TTATTTGCATGA
*
7497971 TTATAT--AT--
1 TTATTTGCATGA
* *
7497979 TTAATTGCATGT
1 TTATTTGCATGA
7497991 TTATTTGCATGA
1 TTATTTGCATGA
*** *
7498003 TTATTAATATTA
1 TTATTTGCATGA
7498015 TTATTTGCATGA
1 TTATTTGCATGA
7498027 TTAT
1 TTAT
7498031 ATATTTAATT
Statistics
Matches: 43, Mismatches: 13, Indels: 8
0.67 0.20 0.12
Matches are distributed among these distances:
8 4 0.09
10 4 0.09
12 35 0.81
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (12 bp):
TTATTTGCATGA
Found at i:7498057 original size:32 final size:32
Alignment explanation
Indices: 7498019--7498175 Score: 156
Period size: 32 Copynumber: 4.8 Consensus size: 32
7498009 ATATTATTAT
*
7498019 TTGCATGATTATATATTTAATTACATGTCTAA
1 TTGCATGATTATATATTTAATTACATGTTTAA
* ** * *
7498051 TTGCATGATTAT-TAATTTATTTATTTGTGTGA
1 TTGCATGATTATAT-ATTTAATTACATGTTTAA
* * *
7498083 TTGCATGATTATATATTTAATTATATATTTAT
1 TTGCATGATTATATATTTAATTACATGTTTAA
* *
7498115 TTGCATGATTTATATATTTAATTGCATGTTTAT
1 TTGCATGA-TTATATATTTAATTACATGTTTAA
*
7498148 TTGCATGATT-TACATTGTTAATTACATG
1 TTGCATGATTATATA-T-TTAATTACATG
7498176 ATTATATATT
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.04
32 60 0.58
33 40 0.38
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.52
Consensus pattern (32 bp):
TTGCATGATTATATATTTAATTACATGTTTAA
Found at i:7498127 original size:21 final size:20
Alignment explanation
Indices: 7498103--7498147 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
7498093 ATATATTTAA
*
7498103 TTATATATTTATTTGCATGAT
1 TTATATATTTAATTGCATG-T
7498124 TTATATATTTAATTGCATGT
1 TTATATATTTAATTGCATGT
7498144 TTAT
1 TTAT
7498148 TTGCATGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.58
Consensus pattern (20 bp):
TTATATATTTAATTGCATGT
Found at i:7498290 original size:19 final size:22
Alignment explanation
Indices: 7498268--7498330 Score: 78
Period size: 19 Copynumber: 3.0 Consensus size: 22
7498258 TATTTATTTA
*
7498268 TTATTGCATGATT-TTA-TAT-
1 TTATTGCATGATTGATATTATG
7498287 TTATTGCATGATATGATATTATG
1 TTATTGCATGAT-TGATATTATG
*
7498310 TTATTGCATGATTAATATTAT
1 TTATTGCATGATTGATATTAT
7498331 ATTTGAATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
19 12 0.32
20 1 0.03
21 2 0.05
22 11 0.29
23 12 0.32
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (22 bp):
TTATTGCATGATTGATATTATG
Found at i:7498434 original size:20 final size:19
Alignment explanation
Indices: 7498375--7498434 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
7498365 TATTGTGTGC
7498375 ATAATTGCATGA-ATATAT
1 ATAATTGCATGATATATAT
* * *
7498393 TTAATTACATAAT-TATTAAT
1 ATAATTGCATGATATA-T-AT
7498413 ATAATTGCATGATATGATAT
1 ATAATTGCATGATAT-ATAT
7498433 AT
1 AT
7498435 TTATATATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
18 11 0.35
19 1 0.03
20 16 0.52
21 2 0.06
22 1 0.03
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (19 bp):
ATAATTGCATGATATATAT
Found at i:7499206 original size:43 final size:43
Alignment explanation
Indices: 7499075--7499210 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 43
7499065 ATCCAAAAAT
* * * *
7499075 ATTTGCATTCACT-TATGGTGATATTCGAGTACCCATG-TCTAA
1 ATTTGCATTCACTCGATGGTGATATCCGAGAACCTA-GATCTAA
* * * * * *
7499117 ATTTGCATTCACTCGGTGGTGATATCC-ATATATCTATATTTGA
1 ATTTGCATTCACTCGATGGTGATATCCGAGA-ACCTAGATCTAA
*
7499160 ATTTGCATTCACTCGATGATGATATCCGAGAACCTAGATCTAA
1 ATTTGCATTCACTCGATGGTGATATCCGAGAACCTAGATCTAA
7499203 ATTTGCAT
1 ATTTGCAT
7499211 CATTCTTTGG
Statistics
Matches: 73, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
42 14 0.19
43 57 0.78
44 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (43 bp):
ATTTGCATTCACTCGATGGTGATATCCGAGAACCTAGATCTAA
Found at i:7499467 original size:46 final size:45
Alignment explanation
Indices: 7499384--7499488 Score: 165
Period size: 46 Copynumber: 2.3 Consensus size: 45
7499374 CAAGTTTTCA
*
7499384 TTTAAATTTCTTTTCAAAATTGTTAAACCTTTACCTAAAGAAGCT
1 TTTAAATTTATTTTCAAAATTGTTAAACCTTTACCTAAAGAAGCT
* * *
7499429 TTTAAATTTATTTTCAAAACTTGTTAAGCCTTTACCTAAAGGAGTT
1 TTTAAATTTATTTTCAAAA-TTGTTAAACCTTTACCTAAAGAAGCT
7499475 TTTAAATTTATTTT
1 TTTAAATTTATTTT
7499489 TTATAAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
45 18 0.33
46 37 0.67
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (45 bp):
TTTAAATTTATTTTCAAAATTGTTAAACCTTTACCTAAAGAAGCT
Found at i:7499573 original size:11 final size:11
Alignment explanation
Indices: 7499534--7499576 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7499524 TAAAAATTAA
7499534 AACAAAAAAAG
1 AACAAAAAAAG
7499545 TAACAAAAAAA-
1 -AACAAAAAAAG
*
7499556 ACCCAAAAAAAG
1 A-ACAAAAAAAG
7499568 AACAAAAAA
1 AACAAAAAA
7499577 CAAAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.04
11 15 0.56
12 11 0.41
ACGTcount: A:0.79, C:0.14, G:0.05, T:0.02
Consensus pattern (11 bp):
AACAAAAAAAG
Found at i:7514867 original size:31 final size:31
Alignment explanation
Indices: 7514831--7514889 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
7514821 AAGTTTAAAA
*
7514831 TTTGCAAAATCAAATAGAGTCCTTAAAAATC
1 TTTGCAAAATCAAATAGAGGCCTTAAAAATC
* *
7514862 TTTGCAAATTCAGATAGAGGCCTTAAAA
1 TTTGCAAAATCAAATAGAGGCCTTAAAA
7514890 GCTTCTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (31 bp):
TTTGCAAAATCAAATAGAGGCCTTAAAAATC
Found at i:7518752 original size:44 final size:44
Alignment explanation
Indices: 7518716--7518812 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
7518706 AATGAGATTA
*
7518716 AAAAATTGATAAAT-ATTTTATTTTTTAATTTTTAAATATTTCAT
1 AAAAATT-ATAAATCATTTTATTTTTTAATTTTTAAATAATTCAT
**
7518760 AAAAATTATGCATCATTTTATTTTTTAATTTTTAAAT-ATATCAT
1 AAAAATTATAAATCATTTTATTTTTTAATTTTTAAATAAT-TCAT
7518804 AAAAATTAT
1 AAAAATTAT
7518813 GAGTTCAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
43 5 0.10
44 43 0.90
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (44 bp):
AAAAATTATAAATCATTTTATTTTTTAATTTTTAAATAATTCAT
Found at i:7518813 original size:44 final size:44
Alignment explanation
Indices: 7518730--7518813 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
7518720 ATTGATAAAT
*
7518730 ATTTTATTTTTTAATTTTTAAATATTTCATAAAAATTATGCATC
1 ATTTTATTTTTTAATTTTTAAATATATCATAAAAATTATGCATC
7518774 ATTTTATTTTTTAATTTTTAAATATATCATAAAAATTATG
1 ATTTTATTTTTTAATTTTTAAATATATCATAAAAATTATG
7518814 AGTTCAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (44 bp):
ATTTTATTTTTTAATTTTTAAATATATCATAAAAATTATGCATC
Found at i:7519864 original size:21 final size:21
Alignment explanation
Indices: 7519840--7519880 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7519830 GCAGTGAGGA
7519840 GTGAGAACGAAGGTGATAAAG
1 GTGAGAACGAAGGTGATAAAG
** *
7519861 GTGAGAGTGGAGGTGATAAA
1 GTGAGAACGAAGGTGATAAA
7519881 ACTGAAGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.02, G:0.41, T:0.17
Consensus pattern (21 bp):
GTGAGAACGAAGGTGATAAAG
Found at i:7527986 original size:19 final size:21
Alignment explanation
Indices: 7527954--7527992 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7527944 AAAGAGTATT
7527954 AAAAATATGCAAA-GAAAATA
1 AAAAATATGCAAAGGAAAATA
*
7527974 AAAAATGTG-AAAGGAAAAT
1 AAAAATATGCAAAGGAAAAT
7527993 TACCCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.67, C:0.03, G:0.15, T:0.15
Consensus pattern (21 bp):
AAAAATATGCAAAGGAAAATA
Found at i:7532470 original size:10 final size:10
Alignment explanation
Indices: 7532457--7532500 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
7532447 TTGAACAGAA
7532457 TTATATATTT
1 TTATATATTT
7532467 TTAT-TAGTTT
1 TTATATA-TTT
7532477 TTATATATTT
1 TTATATATTT
*
7532487 TT-TAAATTT
1 TTATATATTT
7532496 TTATA
1 TTATA
7532501 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
9 10 0.33
10 18 0.60
11 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:7536697 original size:2 final size:2
Alignment explanation
Indices: 7536690--7536728 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7536680 CTCTTGTGCT
7536690 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7536729 TGATTCTTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7539501 original size:25 final size:24
Alignment explanation
Indices: 7539440--7539508 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
7539430 ATGTTTTACT
*
7539440 TTTATTACATTTATTTGTATATATA
1 TTTATTA-ATTTATTTTTATATATA
* * *
7539465 TTTATCTTATTTATTTTTATTTATTC
1 TTTAT-TAATTTATTTTTATATA-TA
*
7539491 TTTATTAATTTAATTTTA
1 TTTATTAATTTATTTTTA
7539509 ATTGTTATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 29 0.81
26 7 0.19
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (24 bp):
TTTATTAATTTATTTTTATATATA
Found at i:7540878 original size:56 final size:55
Alignment explanation
Indices: 7540605--7541051 Score: 348
Period size: 56 Copynumber: 8.1 Consensus size: 55
7540595 CTTAAAAAAA
* *
7540605 TTAATATAAAAAGTAATTTCATGAAAATTTGAGAAAAAAGTTGAAA-TATTAA-TTTTTC
1 TTAA-ATAAAAA-TAATTTCA--AAATTTTGAGGAAAAAGTT-AAAGTATTAATTTTTTC
7540663 TTAAA-AAAAATAATTTCAAAATTTGTGAGGAAAAAGTTAAAGTATTAA-TTTTTC
1 TTAAATAAAAATAATTTCAAAATTT-TGAGGAAAAAGTTAAAGTATTAATTTTTTC
* *** * * * *
7540717 TTAAA-AAAAATGATTTCAAAAAAATGAGGAAAATGTTAAAATTTTAATTTTTCC
1 TTAAATAAAAATAATTTCAAAATTTTGAGGAAAAAGTTAAAGTATTAATTTTTTC
* * *
7540771 TCGAAATAAAAATAATTTCAAAA-TTTGAGCAAAAAGTTGAAA-TATCAATTTTTTC
1 T-TAAATAAAAATAATTTCAAAATTTTGAGGAAAAAGTT-AAAGTATTAATTTTTTC
*
7540826 TTAAATGAAAAATAATTTCAAAATTTTG-GGAAAAGAGTCAAAGTATTAATTTTTTTC
1 TTAAAT-AAAAATAATTTCAAAATTTTGAGGAAAA-AGTTAAAGTATTAA-TTTTTTC
* * * * * *
7540883 TTAAATAAAAATAATTTCAAATTTTTTAGGAAAAAAATTGAAGTATCAATTTTCTCC
1 TTAAATAAAAATAATTTCAAAATTTTGAGG-AAAAAGTTAAAGTATTAATTTT-TTC
* * ** * * *
7540940 TAAAATAAAAATGATTTCAAAAAGTAGAAGAAAGAA-TTGAAA-TATTAATATTTTC
1 TTAAATAAAAATAATTTCAAAATTTTGAGGAAA-AAGTT-AAAGTATTAATTTTTTC
* ** * *
7540995 TT---TAAAAA-AAATTCAGTATTTT-AGGAAAAAAAGTTGAAGTATCAATTTTTTC
1 TTAAATAAAAATAATTTCAAAATTTTGAGG--AAAAAGTTAAAGTATTAATTTTTTC
7541047 TTAAA
1 TTAAA
7541052 ATTAAAATTT
Statistics
Matches: 312, Mismatches: 54, Indels: 49
0.75 0.13 0.12
Matches are distributed among these distances:
50 2 0.01
51 11 0.04
52 24 0.08
53 28 0.09
54 54 0.17
55 60 0.19
56 71 0.23
57 54 0.17
58 8 0.03
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (55 bp):
TTAAATAAAAATAATTTCAAAATTTTGAGGAAAAAGTTAAAGTATTAATTTTTTC
Found at i:7546001 original size:23 final size:23
Alignment explanation
Indices: 7545969--7546021 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
7545959 TTACAGACTT
* * *
7545969 ATAAACAAATATGTTTATGAATA
1 ATAAATAAATATGTTCATAAATA
7545992 ATAAATAAATATGTTCATAAATA
1 ATAAATAAATATGTTCATAAATA
7546015 ATAAATA
1 ATAAATA
7546022 TATTATAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
ATAAATAAATATGTTCATAAATA
Found at i:7549475 original size:21 final size:21
Alignment explanation
Indices: 7549449--7549503 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
7549439 CAAATAAAAT
* *
7549449 TTGAATTTGATTTAATTTTTA
1 TTGAATTTGATTTAAATTTGA
**
7549470 TTGAATTAAATTTAAATTTGA
1 TTGAATTTGATTTAAATTTGA
*
7549491 AT-AATTTGATTTA
1 TTGAATTTGATTTA
7549504 TCGATCGAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (21 bp):
TTGAATTTGATTTAAATTTGA
Found at i:7560317 original size:21 final size:22
Alignment explanation
Indices: 7560293--7560334 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7560283 TAATTTCCAG
*
7560293 ATTTCCTTTT-TTTTCTTTTCA
1 ATTTACTTTTATTTTCTTTTCA
*
7560314 ATTTACTTTTATTTTTTTTTC
1 ATTTACTTTTATTTTCTTTTC
7560335 TAGTTTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTACTTTTATTTTCTTTTCA
Found at i:7561725 original size:27 final size:28
Alignment explanation
Indices: 7561694--7561766 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 28
7561684 AAAAAATATT
7561694 ATATTATAATTTATATTAA-TATGTTAA
1 ATATTATAATTTATATTAATTATGTTAA
* * *
7561721 ATATTA-AATAATATTTTAATTTTGTTAA
1 ATATTATAAT-TTATATTAATTATGTTAA
*
7561749 ATTTATATAATTT-TATTA
1 ATAT-TATAATTTATATTA
7561767 TAATTTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
26 3 0.08
27 13 0.36
28 14 0.39
29 3 0.08
30 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
ATATTATAATTTATATTAATTATGTTAA
Found at i:7562061 original size:2 final size:2
Alignment explanation
Indices: 7562054--7562082 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7562044 CTTAAGCAAA
7562054 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7562083 CACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7562333 original size:30 final size:30
Alignment explanation
Indices: 7562278--7562383 Score: 115
Period size: 30 Copynumber: 3.5 Consensus size: 30
7562268 TTATTACATC
* *
7562278 CAAATAAATTTTTAATTTTTTAATTTATATT
1 CAAATAAATTCTTAA-TATTTAATTTATATT
* * *
7562309 CAAATAAATTCTTAATAATTAATTTGTATC
1 CAAATAAATTCTTAATATTTAATTTATATT
* *
7562339 CAAATAAATTTTTAACATTTAATTTATACTT
1 CAAATAAATTCTTAATATTTAATTTATA-TT
*
7562370 C-AATAAACTCTTAA
1 CAAATAAATTCTTAA
7562384 CAAAAATCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
30 46 0.74
31 16 0.26
ACGTcount: A:0.42, C:0.09, G:0.01, T:0.47
Consensus pattern (30 bp):
CAAATAAATTCTTAATATTTAATTTATATT
Found at i:7568585 original size:42 final size:43
Alignment explanation
Indices: 7568511--7568603 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
7568501 AAACTTCTGT
7568511 ATAATTATGATATTTATAAATAATAATCTATTTATATTC-AA-
1 ATAATTATGATATTTATAAATAATAATCTATTTATATTCAAAC
* * *
7568552 ATAATTATGGTAATTTATTATATGATAAT-TATTTATATTCAAAC
1 ATAATTATGAT-ATTTA-TAAATAATAATCTATTTATATTCAAAC
7568596 ATAATTAT
1 ATAATTAT
7568604 TTAAAATATA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
41 10 0.22
42 16 0.36
43 11 0.24
44 8 0.18
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (43 bp):
ATAATTATGATATTTATAAATAATAATCTATTTATATTCAAAC
Found at i:7572961 original size:22 final size:25
Alignment explanation
Indices: 7572910--7572963 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
7572900 TTAGAAAAAA
*
7572910 TAAATAATAAAAAATAATTTTGATTT
1 TAAAGAATAAAAAATAATTTT-ATTT
7572936 TAAAGAATAAAAAAT-A-TTT-TTT
1 TAAAGAATAAAAAATAATTTTATTT
7572958 TAAAGA
1 TAAAGA
7572964 TAATTATAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 9 0.33
24 3 0.11
25 1 0.04
26 14 0.52
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
TAAAGAATAAAAAATAATTTTATTT
Found at i:7573120 original size:16 final size:17
Alignment explanation
Indices: 7573088--7573123 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7573078 TGGTTATGAT
*
7573088 TTTTTATATAATCATAA
1 TTTTTATATAATAATAA
7573105 TTTTTATA-AATAATAA
1 TTTTTATATAATAATAA
7573121 TTT
1 TTT
7573124 ATTTATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTATATAATAATAA
Found at i:7579506 original size:26 final size:26
Alignment explanation
Indices: 7579477--7579529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7579467 CAAGAGAAGA
*
7579477 TTGACCGGGAAGATTCTCAATTTAGC
1 TTGACCAGGAAGATTCTCAATTTAGC
7579503 TTGACCAGGAAGATTCTCAATTTAGC
1 TTGACCAGGAAGATTCTCAATTTAGC
7579529 T
1 T
7579530 AATGCAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
TTGACCAGGAAGATTCTCAATTTAGC
Found at i:7583725 original size:28 final size:27
Alignment explanation
Indices: 7583678--7583736 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
7583668 TCATCCCTGC
*
7583678 CTTCCCCTTCCCCTTCTCTCTCCTCTCT
1 CTTCCCCTTCCCCCTCTCTC-CCTCTCT
*
7583706 CTTCCCCTTCCCACCT-TCTCCTTCTCT
1 CTTCCCCTTCCC-CCTCTCTCCCTCTCT
7583733 CTTC
1 CTTC
7583737 TTAATCGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 10 0.36
28 16 0.57
29 2 0.07
ACGTcount: A:0.02, C:0.56, G:0.00, T:0.42
Consensus pattern (27 bp):
CTTCCCCTTCCCCCTCTCTCCCTCTCT
Found at i:7583918 original size:35 final size:35
Alignment explanation
Indices: 7583872--7583943 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
7583862 GTGATATAAT
*
7583872 TTTATTAAGTATCATGCAACGTAAGTTACTTATCC
1 TTTATCAAGTATCATGCAACGTAAGTTACTTATCC
* *
7583907 TTTATCAAGTATCATGCCACGTAAGTTAGTTATCC
1 TTTATCAAGTATCATGCAACGTAAGTTACTTATCC
7583942 TT
1 TT
7583944 ACGATGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (35 bp):
TTTATCAAGTATCATGCAACGTAAGTTACTTATCC
Found at i:7588579 original size:18 final size:17
Alignment explanation
Indices: 7588544--7588578 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7588534 TTAAATTATT
7588544 AGAAAAAAATAAATAAA
1 AGAAAAAAATAAATAAA
7588561 AGAAGAAAAAT-AATAAA
1 AGAA-AAAAATAAATAAA
7588578 A
1 A
7588579 AAATGTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (17 bp):
AGAAAAAAATAAATAAA
Found at i:7598526 original size:14 final size:13
Alignment explanation
Indices: 7598493--7598527 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7598483 AATGTTACAT
7598493 TTACTTTATTAAA
1 TTACTTTATTAAA
*
7598506 ATACTTTATTAAA
1 TTACTTTATTAAA
7598519 GTTACTTTA
1 -TTACTTTA
7598528 AGTCAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (13 bp):
TTACTTTATTAAA
Found at i:7598542 original size:19 final size:19
Alignment explanation
Indices: 7598518--7598554 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7598508 ACTTTATTAA
7598518 AGTTACTTTAAGTCAAGTT
1 AGTTACTTTAAGTCAAGTT
7598537 AGTTACTTTAAGTCAAGT
1 AGTTACTTTAAGTCAAGT
7598555 CATGGACCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (19 bp):
AGTTACTTTAAGTCAAGTT
Found at i:7600427 original size:25 final size:27
Alignment explanation
Indices: 7600376--7600426 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7600366 ATATTTTAAT
*
7600376 AAAACATCCAAAAAATAAAAATTTTTA
1 AAAACATCAAAAAAATAAAAATTTTTA
*
7600403 AAAAC-TCAAAAAAATGAAAATTTT
1 AAAACATCAAAAAAATAAAAATTTT
7600427 AGTAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAACATCAAAAAAATAAAAATTTTTA
Found at i:7600433 original size:18 final size:17
Alignment explanation
Indices: 7600412--7600456 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7600402 AAAAACTCAA
*
7600412 AAAAATGAAAATTTTAGT
1 AAAAAT-AAAATATTAGT
7600430 AAAAATAAAATATTAGT
1 AAAAATAAAATATTAGT
*
7600447 AAAATTAAAA
1 AAAAATAAAA
7600457 AAATTCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (17 bp):
AAAAATAAAATATTAGT
Found at i:7600433 original size:27 final size:27
Alignment explanation
Indices: 7600368--7600433 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
7600358 AAATCTCAAT
*
7600368 ATTTTAATAAAACATCCAAAAAATAAAA
1 ATTTT-ATAAAACATCAAAAAAATAAAA
*
7600396 ATTTT-TAAAA-ACTCAAAAAAATGAAA
1 ATTTTATAAAACA-TCAAAAAAATAAAA
7600422 ATTTTAGTAAAA
1 ATTTTA-TAAAA
7600434 ATAAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 22 0.67
28 10 0.30
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (27 bp):
ATTTTATAAAACATCAAAAAAATAAAA
Found at i:7600492 original size:17 final size:18
Alignment explanation
Indices: 7600472--7600509 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
7600462 CACAAAACTT
*
7600472 AAAAACCTGAAA-TTTAA
1 AAAAACCTAAAATTTTAA
*
7600489 AAAAATCTAAAATTTTAA
1 AAAAACCTAAAATTTTAA
7600507 AAA
1 AAA
7600510 TTAAAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAACCTAAAATTTTAA
Found at i:7600509 original size:9 final size:9
Alignment explanation
Indices: 7600497--7600556 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
7600487 AAAAAAATCT
7600497 AAAATTTTA
1 AAAATTTTA
7600506 AAAA--TTA
1 AAAATTTTA
*
7600513 AAAAATTTA
1 AAAATTTTA
* *
7600522 AAAATGTGA
1 AAAATTTTA
*
7600531 AATATTTTA
1 AAAATTTTA
*
7600540 AAAATTGTA
1 AAAATTTTA
*
7600549 AAGATTTT
1 AAAATTTT
7600557 TGAAAAAAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
7 7 0.18
9 32 0.82
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (9 bp):
AAAATTTTA
Found at i:7600517 original size:17 final size:17
Alignment explanation
Indices: 7600497--7600545 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7600487 AAAAAAATCT
7600497 AAAATTTTAAAAATTAA
1 AAAATTTTAAAAATTAA
*
7600514 AAAA-TTTAAAAATGTGA
1 AAAATTTTAAAAAT-TAA
*
7600531 AATATTTTAAAAATT
1 AAAATTTTAAAAATT
7600546 GTAAAGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.32
17 10 0.36
18 9 0.32
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATTTTAAAAATTAA
Found at i:7600555 original size:18 final size:16
Alignment explanation
Indices: 7600489--7600556 Score: 66
Period size: 16 Copynumber: 4.0 Consensus size: 16
7600479 TGAAATTTAA
*
7600489 AAAAATCTAAAATTTT
1 AAAAATGTAAAATTTT
*
7600505 AAAAAT-TAAAAAATTT
1 AAAAATGT-AAAATTTT
7600521 AAAAATGTGAAATATTTT
1 AAAAATGT-AAA-ATTTT
7600539 AAAAATTGTAAAGATTTT
1 AAAAA-TGTAAA-ATTTT
7600557 TGAAAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
15 1 0.02
16 19 0.43
17 4 0.09
18 17 0.39
19 3 0.07
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.37
Consensus pattern (16 bp):
AAAAATGTAAAATTTT
Found at i:7600557 original size:19 final size:18
Alignment explanation
Indices: 7600500--7600563 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 18
7600490 AAAATCTAAA
7600500 ATTTTAAAAAT-TAAAA-
1 ATTTTAAAAATGTAAAAT
* *
7600516 AATTTAAAAATGTGAAAT
1 ATTTTAAAAATGTAAAAT
7600534 ATTTTAAAAATTGTAAAGAT
1 ATTTTAAAAA-TGTAAA-AT
7600554 -TTTTGAAAAA
1 ATTTT-AAAAA
7600564 AAATAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
16 10 0.26
17 4 0.10
18 9 0.23
19 9 0.23
20 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.38
Consensus pattern (18 bp):
ATTTTAAAAATGTAAAAT
Found at i:7600926 original size:18 final size:18
Alignment explanation
Indices: 7600905--7600978 Score: 52
Period size: 17 Copynumber: 4.4 Consensus size: 18
7600895 TTTGGGTAAT
7600905 TTTTTAATTTTTAAAATA
1 TTTTTAATTTTTAAAATA
* *
7600923 -TTTTAGTTTCT--AA-A
1 TTTTTAATTTTTAAAATA
*
7600937 TTTATAA-TTTTAAAAT-
1 TTTTTAATTTTTAAAATA
* *
7600953 TTTTTATTTTTTTAAAATT
1 TTTTTA-ATTTTTAAAATA
7600972 TTTTTAA
1 TTTTTAA
7600979 ATGCTGACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
14 4 0.10
15 6 0.15
16 7 0.17
17 9 0.22
18 9 0.22
19 6 0.15
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTTTAATTTTTAAAATA
Found at i:7602142 original size:19 final size:20
Alignment explanation
Indices: 7602111--7602160 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
7602101 CATATCATTA
*
7602111 AAAAATAAAAATAATCACAA-
1 AAAAAT-AAAATAATCAAAAC
*
7602131 ATAAATAAAATAATCAAAAC
1 AAAAATAAAATAATCAAAAC
7602151 AAAAATAAAA
1 AAAAATAAAA
7602161 GAAAGAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAATAAAATAATCAAAAC
Found at i:7612300 original size:18 final size:17
Alignment explanation
Indices: 7612279--7612323 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7612269 AAAAACTCAA
*
7612279 AAAAATGAAAATTTTAGT
1 AAAAAT-AAAATATTAGT
7612297 AAAAATAAAATATTAGT
1 AAAAATAAAATATTAGT
*
7612314 AAAATTAAAA
1 AAAAATAAAA
7612324 AAATTCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (17 bp):
AAAAATAAAATATTAGT
Found at i:7612306 original size:26 final size:26
Alignment explanation
Indices: 7612242--7612293 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
7612232 AATATTTTAA
*
7612242 TAAAAAATCCAAAAAATAAAAATTTT
1 TAAAAAATCAAAAAAATAAAAATTTT
* *
7612268 TAAAAACTCAAAAAAATGAAAATTTT
1 TAAAAAATCAAAAAAATAAAAATTTT
7612294 AGTAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (26 bp):
TAAAAAATCAAAAAAATAAAAATTTT
Found at i:7612361 original size:18 final size:19
Alignment explanation
Indices: 7612340--7612381 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7612330 ACAAAAACTT
7612340 AAAAATCTGAAAA-ATTTAA
1 AAAAATCT-AAAATATTTAA
*
7612359 AAAAATCTAAAATTTTTAA
1 AAAAATCTAAAATATTTAA
7612378 AAAA
1 AAAA
7612382 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATCTAAAATATTTAA
Found at i:7612379 original size:17 final size:18
Alignment explanation
Indices: 7612338--7612380 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7612328 TCACAAAAAC
7612338 TTAAAAATCTGAAAAATTT
1 TTAAAAATCT-AAAAATTT
**
7612357 AAAAAAATCT-AAAATTT
1 TTAAAAATCTAAAAATTT
7612374 TTAAAAA
1 TTAAAAA
7612381 ATTTTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 12 0.60
19 8 0.40
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (18 bp):
TTAAAAATCTAAAAATTT
Found at i:7612390 original size:9 final size:9
Alignment explanation
Indices: 7612338--7612421 Score: 60
Period size: 9 Copynumber: 9.2 Consensus size: 9
7612328 TCACAAAAAC
*
7612338 TTAAAAATC
1 TTAAAAATT
*
7612347 TGAAAAATT
1 TTAAAAATT
* *
7612356 TAAAAAAAT
1 TTAAAAATT
* *
7612365 CTAAAATTT
1 TTAAAAATT
7612374 TTAAAAAATT
1 TT-AAAAATT
*
7612384 TTAAAAATG
1 TTAAAAATT
* *
7612393 TGAAACATT
1 TTAAAAATT
7612402 TTAAAAATT
1 TTAAAAATT
* *
7612411 GTAAAGATT
1 TTAAAAATT
7612420 TT
1 TT
7612422 TTGAATAAAA
Statistics
Matches: 55, Mismatches: 19, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
9 47 0.85
10 8 0.15
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (9 bp):
TTAAAAATT
Found at i:7612594 original size:20 final size:19
Alignment explanation
Indices: 7612553--7612593 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7612543 AGAACTTTTT
** *
7612553 AAATTTTTATTTTTTTTCA
1 AAATTTTTAGATTCTTTCA
7612572 AAATTTTTAGATTCTTTCA
1 AAATTTTTAGATTCTTTCA
7612591 AAA
1 AAA
7612594 AAAAATAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (19 bp):
AAATTTTTAGATTCTTTCA
Found at i:7614822 original size:19 final size:17
Alignment explanation
Indices: 7614800--7614867 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 17
7614790 CCAATTTAGT
7614800 TTTTTATTGTGTATTTTTA
1 TTTTTATT-T-TATTTTTA
*
7614819 TTTTTATTTTATTTTTTTC
1 TTTTTATTTTA--TTTTTA
7614838 TTTTGTATTTTATGTATTTA
1 TTTT-TATTTTAT-T-TTTA
7614858 TTATTTATTT
1 TT-TTTATTT
7614868 ATTATTACTA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 2 0.05
19 18 0.44
20 17 0.41
21 2 0.05
ACGTcount: A:0.16, C:0.01, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTTATTTTATTTTTA
Done.