Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 49 of 64
Found at i:7844916 original size:20 final size:20
Alignment explanation
Indices: 7844891--7844929 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7844881 AGGAACAGAT
7844891 AAAAAACATACAA-AAAATAA
1 AAAAAACATA-AAGAAAATAA
*
7844911 AAAAAATATAAAGAAAATA
1 AAAAAACATAAAGAAAATA
7844930 GAGGTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (20 bp):
AAAAAACATAAAGAAAATAA
Found at i:7845588 original size:25 final size:26
Alignment explanation
Indices: 7845560--7845610 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7845550 TTAATTATCC
7845560 AATGATAAA-ATTTATAAAAATTTTA
1 AATGATAAATATTTATAAAAATTTTA
* * *
7845585 AATGGTAAATTTTTATAAAATTTTTA
1 AATGATAAATATTTATAAAAATTTTA
7845611 GGTGAGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (26 bp):
AATGATAAATATTTATAAAAATTTTA
Found at i:7845709 original size:7 final size:7
Alignment explanation
Indices: 7845694--7845736 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
7845684 ATTTATTTTC
*
7845694 AAAACAA
1 AAAATAA
7845701 AAAATAA
1 AAAATAA
7845708 AAAATATA
1 AAAATA-A
7845716 AAATATAA
1 AAA-ATAA
7845724 AAAATATA
1 AAAATA-A
7845732 AAAAT
1 AAAAT
7845737 TTTAGAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
7 15 0.47
8 14 0.44
9 3 0.09
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (7 bp):
AAAATAA
Found at i:7845716 original size:9 final size:9
Alignment explanation
Indices: 7845699--7845735 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7845689 TTTTCAAAAC
7845699 AAAAA-ATA
1 AAAAATATA
7845707 AAAAATAT-
1 AAAAATATA
7845715 -AAAATATA
1 AAAAATATA
7845723 AAAAATATA
1 AAAAATATA
7845732 AAAA
1 AAAA
7845736 TTTTAGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.27
8 5 0.19
9 14 0.54
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATATA
Found at i:7845723 original size:16 final size:16
Alignment explanation
Indices: 7845699--7845735 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7845689 TTTTCAAAAC
7845699 AAAAAATAAAAAATAT
1 AAAAAATAAAAAATAT
*
7845715 AAAATATAAAAAATAT
1 AAAAAATAAAAAATAT
7845731 AAAAA
1 AAAAA
7845736 TTTTAGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAATAAAAAATAT
Found at i:7847886 original size:15 final size:15
Alignment explanation
Indices: 7847855--7847889 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7847845 AGGAATTTGA
*
7847855 ATTTTAAGGTTTTGG
1 ATTTTAAGGTTTGGG
*
7847870 ATTTTAGGGTTTGGG
1 ATTTTAAGGTTTGGG
7847885 ATTTT
1 ATTTT
7847890 GGATTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (15 bp):
ATTTTAAGGTTTGGG
Found at i:7847986 original size:16 final size:15
Alignment explanation
Indices: 7847936--7847991 Score: 69
Period size: 14 Copynumber: 3.7 Consensus size: 15
7847926 GGGCTTTGAT
7847936 TTTAGGGTTTAGAGG
1 TTTAGGGTTTAGAGG
* * *
7847951 TTTAAGGTTTTGA-T
1 TTTAGGGTTTAGAGG
7847965 TTTAGGGTTTAGAGG
1 TTTAGGGTTTAGAGG
7847980 ATTTAGGGTTTA
1 -TTTAGGGTTTA
7847992 ATTTATATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.33
15 11 0.33
16 11 0.33
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (15 bp):
TTTAGGGTTTAGAGG
Found at i:7847995 original size:29 final size:28
Alignment explanation
Indices: 7847898--7847995 Score: 115
Period size: 29 Copynumber: 3.4 Consensus size: 28
7847888 TTGGATTTTT
* * *
7847898 GGGTTTAATTTTAAGGTTTGGAGGTTTG
1 GGGTTTAATTTTAGGGTTTAGAGGTTTA
*
7847926 GGGCTTTGATTTTAGGGTTTAGAGGTTTAA
1 GGG-TTTAATTTTAGGGTTTAGAGGTTT-A
* *
7847956 GGTTTTGATTTTAGGGTTTAGAGGATTTA
1 GGGTTTAATTTTAGGGTTTAGAGG-TTTA
7847985 GGGTTTAATTT
1 GGGTTTAATTT
7847996 ATATTATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.05
29 52 0.87
30 5 0.08
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (28 bp):
GGGTTTAATTTTAGGGTTTAGAGGTTTA
Found at i:7849140 original size:3 final size:3
Alignment explanation
Indices: 7849134--7849236 Score: 76
Period size: 3 Copynumber: 36.0 Consensus size: 3
7849124 AAAAAAAAAC
*
7849134 TTA TTA TTA TTA TTA TTA -TA TT- TT- TTA TT- TTA TTA -TA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
7849177 GTT- TTAA TTA -AA CCA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
7849222 ACA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
7849237 ATAGTACTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
2 13 0.16
3 64 0.79
4 4 0.05
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7849166 original size:17 final size:18
Alignment explanation
Indices: 7849140--7849175 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
7849130 AAACTTATTA
7849140 TTATTATTATTATATTTT
1 TTATTATTATTATATTTT
7849158 TTATT-TTATTATATTTT
1 TTATTATTATTATATTTT
7849175 T
1 T
7849176 AGTTTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTATTATTATATTTT
Found at i:7849927 original size:208 final size:208
Alignment explanation
Indices: 7849533--7849931 Score: 489
Period size: 208 Copynumber: 1.9 Consensus size: 208
7849523 AGATTGTACC
* * *
7849533 GCAAGTTAAAAAATAAAGACAACATGGATTAAACTGCGAGTCAGGAAAATAGAAACGATTGAGAT
1 GCAAGTCAAAAAATAAAGACAACATGGATTAAACCGCGAGTCAAGAAAATAGAAACGATTGAGAT
** * *
7849598 TAAACCATAAGTCATAGATTAACGATGACTAGGATTGAGCTGCAAGTCAGAGGAATAAATATGAC
66 TAAACCATAAGTCATAGATTAACGATGACTAGGATTGAGCCACAAATCAGAGGAATAAAGATGAC
* ** * ***
7849663 TAGGATTGAACCGTGAGTCAAGAATTAACGACAAATGGGATTGAACCGTGAGTTAAAAAAAATGA
131 TAGGATTAAACCGCAAGTCAAGAATTAACGACAAATGGAATTGAACCACAAGTTAAAAAAAATGA
7849728 CTGGGATTAAACT
196 CTGGGATTAAACT
* * * * *
7849741 GCAAGTCAGAAAAATAAAGAGACCA-GGCTTAAACCGCGAGTCAAGAAAATAGAAATGATTGTGA
1 GCAAGTCA-AAAAATAAAGACAACATGGATTAAACCGCGAGTCAAGAAAATAGAAACGATTGAGA
* * * *
7849805 TTAAATCGTAAGTCATAGATTAATGATGACT-GAGATTGAGCCATAAATCAGA-GATATAAAGAT
65 TTAAACCATAAGTCATAGATTAACGATGACTAG-GATTGAGCCACAAATCAGAGGA-ATAAAGAT
* * * * * *
7849868 GACTAGGATTAAACTGCAAGTCAGGAATTAATGGCGATTGGAATTGAACCACAAGTTAAAAAAA
128 GACTAGGATTAAACCGCAAGTCAAGAATTAACGACAAATGGAATTGAACCACAAGTTAAAAAAA
7849932 TAAAAGTGAC
Statistics
Matches: 159, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
207 3 0.02
208 142 0.89
209 14 0.09
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (208 bp):
GCAAGTCAAAAAATAAAGACAACATGGATTAAACCGCGAGTCAAGAAAATAGAAACGATTGAGAT
TAAACCATAAGTCATAGATTAACGATGACTAGGATTGAGCCACAAATCAGAGGAATAAAGATGAC
TAGGATTAAACCGCAAGTCAAGAATTAACGACAAATGGAATTGAACCACAAGTTAAAAAAAATGA
CTGGGATTAAACT
Found at i:7849968 original size:36 final size:35
Alignment explanation
Indices: 7849926--7850163 Score: 123
Period size: 36 Copynumber: 6.8 Consensus size: 35
7849916 CCACAAGTTA
* *
7849926 AAAAAATAAAAGTGACTAGGATTAAACCATGAGTC
1 AAAAAATAAAAGTGACTCGGATTAAACCGTGAGTC
*
7849961 AAGAAAATAGAAA-TGAC-CGGAATTAAATCGTGAGTC
1 AA-AAAATA-AAAGTGACTCGG-ATTAAACCGTGAGTC
* * * * *
7849997 -AAAGATTAACGATGA-TCGAGATTGAACCGTAAGTC
1 AAAAAATAAAAG-TGACTCG-GATTAAACCGTGAGTC
* * * * *
7850032 AAAAAATAAAAGTGACTGGGCTTAAATCGCGAGTT
1 AAAAAATAAAAGTGACTCGGATTAAACCGTGAGTC
* ****
7850067 AAGAAAATAAAAATGACT-GGAATTAAATTACGAGTC
1 AA-AAAATAAAAGTGACTCGG-ATTAAACCGTGAGTC
* * * * * *
7850103 -AAAGATTAATGACGAC-CGGGATTGAACCGTAAGTC
1 AAAAAATAAAAG-TGACTC-GGATTAAACCGTGAGTC
7850138 AAAAAATAAAAGTGACT-GGATTAAAC
1 AAAAAATAAAAGTGACTCGGATTAAAC
7850164 TACAAATTAG
Statistics
Matches: 147, Mismatches: 40, Indels: 33
0.67 0.18 0.15
Matches are distributed among these distances:
33 2 0.01
34 18 0.12
35 55 0.37
36 69 0.47
37 3 0.02
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (35 bp):
AAAAAATAAAAGTGACTCGGATTAAACCGTGAGTC
Found at i:7850081 original size:106 final size:105
Alignment explanation
Indices: 7849910--7850399 Score: 441
Period size: 106 Copynumber: 4.6 Consensus size: 105
7849900 GGCGATTGGA
* * * *
7849910 ATTGAACCACAAGTTAAAAAAATAAAAGTGACTAGGATTAAA-C-CATGAGTCAAGAAAATAGAA
1 ATTGAACCGCAAG-TCAAAAAATAAAAGTGACT-GGATTAAATCGCA--AATCAAGAAAATAAAA
* * *
7849973 ATGACCGGAATTAAATCGTGAGTCAAAGATTAACGATGATCGAG
62 ATGACCGGAATTAAATCGCGAGTCAAAGATTAATGACGATCGAG
* * * * *
7850017 ATTGAACCGTAAGTCAAAAAATAAAAGTGACTGGGCTTAAATCGCGAGTTAAGAAAATAAAAATG
1 ATTGAACCGCAAGTCAAAAAATAAAAGTGACT-GGATTAAATCGCAAATCAAGAAAATAAAAATG
* ** * *
7850082 ACTGGAATTAAATTACGAGTCAAAGATTAATGACGACCGGG
65 ACCGGAATTAAATCGCGAGTCAAAGATTAATGACGATCGAG
* * * *
7850123 ATTGAACCGTAAGTCAAAAAATAAAAGTGACTGGATTAAA-CTACAAATTAGGAAAATAAAAATG
1 ATTGAACCGCAAGTCAAAAAATAAAAGTGACTGGATTAAATC-GCAAATCAAGAAAATAAAAATG
* * * * *
7850187 ACTGGGATTAAATCGCGAGTTAGAGATTAATGACGA-CTGGG
65 ACCGGAATTAAATCGCGAGTCAAAGATTAATGACGATC-GAG
* * * * * *
7850228 ATTGAGCCACAAGTTAGAAAATAAAAGTGA-TGGATTAAATTGCAAATCAAAAAAATAAAAATGA
1 ATTGAACCGCAAGTCAAAAAATAAAAGTGACTGGATTAAATCGCAAATCAAGAAAATAAAAATGA
* * * ** * *
7850292 TCGGGATTAAACCGTAAATCAGAGATTAATGACGATCGAG
66 CCGGAATTAAATCGCGAGTCAAAGATTAATGACGATCGAG
* * * * * * *
7850332 ATTGAATCGCGAGTTAGAAAAAATAAAAGTGATTGGGATTAAATCGTAAATCAAAAAAATAGAAA
1 ATTGAACCGCAAG-T-CAAAAAATAAAAGTGACT-GGATTAAATCGCAAATCAAGAAAATAAAAA
7850397 TGA
63 TGA
7850400 TTGAGATTAA
Statistics
Matches: 320, Mismatches: 53, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
104 69 0.22
105 86 0.27
106 121 0.38
107 13 0.04
108 31 0.10
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (105 bp):
ATTGAACCGCAAGTCAAAAAATAAAAGTGACTGGATTAAATCGCAAATCAAGAAAATAAAAATGA
CCGGAATTAAATCGCGAGTCAAAGATTAATGACGATCGAG
Found at i:7850311 original size:36 final size:36
Alignment explanation
Indices: 7850245--7850410 Score: 113
Period size: 36 Copynumber: 4.7 Consensus size: 36
7850235 CACAAGTTAG
* * *
7850245 AAAATAAAAGTGAT--GGATTAAATTGCAAATCAAA
1 AAAATAAAAATGATCGGGATTAAATCGTAAATCAAA
* *
7850279 AAAATAAAAATGATCGGGATTAAACCGTAAATC-AG
1 AAAATAAAAATGATCGGGATTAAATCGTAAATCAAA
* * ** * * * ** * *
7850314 AGATTAATGACGATCGAGATTGAATCGCGAGTTAGAA
1 AAAATAAAAATGATCGGGATTAAATCGTAAATCA-AA
* *
7850351 AAAATAAAAGTGATTGGGATTAAATCGTAAATCAAA
1 AAAATAAAAATGATCGGGATTAAATCGTAAATCAAA
* * *
7850387 AAAATAGAAATGATTGAGATTAAA
1 AAAATAAAAATGATCGGGATTAAA
7850411 CCGTGAGTTA
Statistics
Matches: 94, Mismatches: 34, Indels: 6
0.70 0.25 0.04
Matches are distributed among these distances:
34 13 0.14
35 22 0.23
36 37 0.39
37 22 0.23
ACGTcount: A:0.51, C:0.07, G:0.19, T:0.23
Consensus pattern (36 bp):
AAAATAAAAATGATCGGGATTAAATCGTAAATCAAA
Found at i:7850316 original size:104 final size:105
Alignment explanation
Indices: 7849894--7850453 Score: 396
Period size: 106 Copynumber: 5.3 Consensus size: 105
7849884 CAAGTCAGGA
* * * * * *
7849894 ATTAATGGCGATTGGAATTGAACCACAAGTTAAAAAAATAAAAGTGACTAGGATTAAA--CCATG
1 ATTAATGACGACTGGGATTGAACCGCAAGTT-AGAAAATAAAAGTGACT-GGATTAAATTGCA--
* * * * * * * *
7849957 AGTCAAGAAAATAGAAATGACCGGAATTAAATCGTGAGTCAAAG
62 AATCAAAAAAATAAAAATGATCGGGATTAAACCGTGAGTTAGAG
* * * * * * * * * *
7850001 ATTAACGATGA-TCGAGATTGAACCGTAAGTCAAAAAATAAAAGTGACTGGGCTTAAATCGCGAG
1 ATTAATGACGACT-GGGATTGAACCGCAAGTTAGAAAATAAAAGTGACT-GGATTAAATTGCAAA
* * * **** * *
7850065 TTAAGAAAATAAAAATGA-CTGGAATTAAATTACGAGTCAAAG
64 TCAAAAAAATAAAAATGATC-GGGATTAAACCGTGAGTTAGAG
* * * * * * *
7850107 ATTAATGACGACCGGGATTGAACCGTAAGTCAAAAAATAAAAGTGACTGGATTAAACTACAAATT
1 ATTAATGACGACTGGGATTGAACCGCAAGTTAGAAAATAAAAGTGACTGGATTAAATTGCAAATC
** * *
7850172 AGGAAAATAAAAATGA-CTGGGATTAAATCGCGAGTTAGAG
66 AAAAAAATAAAAATGATC-GGGATTAAACCGTGAGTTAGAG
* *
7850212 ATTAATGACGACTGGGATTGAGCCACAAGTTAGAAAATAAAAGTGA-TGGATTAAATTGCAAATC
1 ATTAATGACGACTGGGATTGAACCGCAAGTTAGAAAATAAAAGTGACTGGATTAAATTGCAAATC
* * *
7850276 AAAAAAATAAAAATGATCGGGATTAAACCGTAAATCAGAG
66 AAAAAAATAAAAATGATCGGGATTAAACCGTGAGTTAGAG
* * * * * *
7850316 ATTAATGACGA-TCGAGATTGAATCGCGAGTTAGAAAAAATAAAAGTGATTGGGATTAAATCGTA
1 ATTAATGACGACT-GGGATTGAACCGCAAGTTAG--AAAATAAAAGTGACT-GGATTAAATTGCA
* * * *
7850380 AATCAAAAAAATAGAAATGATTGAGATTAAACCGTGAGTTAGAT
62 AATCAAAAAAATAAAAATGATCGGGATTAAACCGTGAGTTAGAG
* * * *
7850424 ATTAACGACAACTAGGATTGAGCCGCAAGT
1 ATTAATGACGACTGGGATTGAACCGCAAGT
7850454 CAGAGTAATA
Statistics
Matches: 371, Mismatches: 70, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
103 1 0.00
104 72 0.19
105 87 0.23
106 118 0.32
107 22 0.06
108 70 0.19
109 1 0.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (105 bp):
ATTAATGACGACTGGGATTGAACCGCAAGTTAGAAAATAAAAGTGACTGGATTAAATTGCAAATC
AAAAAAATAAAAATGATCGGGATTAAACCGTGAGTTAGAG
Found at i:7850513 original size:35 final size:35
Alignment explanation
Indices: 7850424--7850527 Score: 93
Period size: 35 Copynumber: 2.9 Consensus size: 35
7850414 TGAGTTAGAT
* * *
7850424 ATTAACGACAACTAGGATTGAGCCGCAAGTCAGAGTA
1 ATTAACGACGACTAGGATTAAACCGCAAGTCA-AG-A
* * *
7850461 A-TAAAGACGACTGGGATTAAACCGCGAGTCAAGA
1 ATTAACGACGACTAGGATTAAACCGCAAGTCAAGA
* * * *
7850495 ATTAACGACGATTTGGATTGAACTGCAAGTCAA
1 ATTAACGACGACTAGGATTAAACCGCAAGTCAA
7850528 AAAAATAAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
34 2 0.04
35 27 0.50
36 24 0.44
37 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.20
Consensus pattern (35 bp):
ATTAACGACGACTAGGATTAAACCGCAAGTCAAGA
Found at i:7850535 original size:71 final size:70
Alignment explanation
Indices: 7850382--7850537 Score: 161
Period size: 71 Copynumber: 2.2 Consensus size: 70
7850372 AAATCGTAAA
* * * * *
7850382 TCAAAAAAATAGAAATGATTGAGATTAAACCGTGAGTTAGATATTAACGACAACTAGGATTGAGC
1 TCAAAAAAATA-AAACGACTGAGATTAAACCGCGAGTAAGATATTAACGACAACTAGGATTGAAC
7850447 CGCAAG
65 CGCAAG
* ** * * * *
7850453 TCAGAGTAATAAAGACGACTGGGATTAAACCGCGAGTCAAGA-ATTAACGACGATTTGGATTGAA
1 TCAAAAAAATAAA-ACGACTGAGATTAAACCGCGAGT-AAGATATTAACGACAACTAGGATTGAA
*
7850517 CTGCAAG
64 CCGCAAG
7850524 TCAAAAAAATAAAA
1 TCAAAAAAATAAAA
7850538 GTAACCGGGA
Statistics
Matches: 67, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
70 3 0.04
71 61 0.91
72 3 0.04
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.21
Consensus pattern (70 bp):
TCAAAAAAATAAAACGACTGAGATTAAACCGCGAGTAAGATATTAACGACAACTAGGATTGAACC
GCAAG
Found at i:7850584 original size:36 final size:36
Alignment explanation
Indices: 7850469--7850740 Score: 153
Period size: 36 Copynumber: 7.6 Consensus size: 36
7850459 TAATAAAGAC
* * * *
7850469 GACTGGGATTAAACCGCGAGTC-AAGAATTA-ACGAC
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGA-AAT
* * * * *
7850504 GATTTGGATTGAACTGCAAGTCAAAAAAATA-AAAGT
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGAAA-T
* * **
7850540 AACCGGGATTAAACCATGAGTCAAAAAAATAGAAAT
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGAAAT
** ** *
7850576 GGTTGGGATTAAATTGCGAGTCAAGAATTAAT-G--AT
1 GACTGGGATTAAACCGCGAGTCAA-AA-AAATAGAAAT
* * * * * * *
7850611 GGCTGAGATTGAACCACAAATCAGAAAAATA-AAAGT
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGAAA-T
* *
7850647 GACTGGGATTAAACCGCGAGTTAAGAAAATAGAAAT
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGAAAT
* * *
7850683 GACTGGGATTAAACCGTGAGTCAGAAAAATAGATAAC
1 GACTGGGATTAAACCGCGAGTCAAAAAAATAGA-AAT
* *
7850720 GACTGAGATTAAATCGCGAGT
1 GACTGGGATTAAACCGCGAGT
7850741 AAGAGATTAA
Statistics
Matches: 172, Mismatches: 54, Indels: 20
0.70 0.22 0.08
Matches are distributed among these distances:
33 3 0.02
34 2 0.01
35 36 0.21
36 99 0.58
37 29 0.17
38 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.21
Consensus pattern (36 bp):
GACTGGGATTAAACCGCGAGTCAAAAAAATAGAAAT
Found at i:7850624 original size:107 final size:107
Alignment explanation
Indices: 7850469--7850705 Score: 287
Period size: 107 Copynumber: 2.2 Consensus size: 107
7850459 TAATAAAGAC
** ** *
7850469 GACTGGGATTAAACCGCGAGTCAAGAATTAACGACGATTTGGATTGAACTGCAAGTCAAAAAAAT
1 GACTGGGATTAAACCGCGAGTCAAGAATTAACGACGAGCTGGATTGAACCACAAATCAAAAAAAT
*
7850534 AAAAGTAACCGGGATTAAACCATGAGTCAAAAAAATAGAAAT
66 AAAAGTAACCGGGATTAAACCACGAGTCAAAAAAATAGAAAT
** ** * * *
7850576 GGTTGGGATTAAATTGCGAGTCAAGAATTAATGATG-GCTGAGATTGAACCACAAATCAGAAAAA
1 GACTGGGATTAAACCGCGAGTCAAGAATTAACGACGAGCTG-GATTGAACCACAAATCAAAAAAA
* * * * *
7850640 TAAAAGTGACTGGGATTAAACCGCGAGTTAAGAAAATAGAAAT
65 TAAAAGTAACCGGGATTAAACCACGAGTCAAAAAAATAGAAAT
*
7850683 GACTGGGATTAAACCGTGAGTCA
1 GACTGGGATTAAACCGCGAGTCA
7850706 GAAAAATAGA
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
106 2 0.02
107 104 0.98
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (107 bp):
GACTGGGATTAAACCGCGAGTCAAGAATTAACGACGAGCTGGATTGAACCACAAATCAAAAAAAT
AAAAGTAACCGGGATTAAACCACGAGTCAAAAAAATAGAAAT
Found at i:7850762 original size:72 final size:70
Alignment explanation
Indices: 7850544--7850770 Score: 208
Period size: 71 Copynumber: 3.2 Consensus size: 70
7850534 AAAAGTAACC
* ** *
7850544 GGGATTAAACCATGAGTCAAAAAAATAGAAATGGTTGGGATTAAATTGCGAGTCAAGAATTAATG
1 GGGATTAAACCATGAGTCAGAAAAATAGAAATGACTGGGATTAAATCGCGAGT-AAGAATTAATG
* *
7850609 ATGGCT
65 AAGACT
* * ** * *
7850615 GAGATTGAACCACAAATCAGAAAAATA-AAAGTGACTGGGATTAAACCGCGAGTTAAGAA--AAT
1 GGGATTAAACCATGAGTCAGAAAAATAGAAA-TGACTGGGATTAAATCGCGAG-TAAGAATTAAT
7850677 AGAAATGACT
64 -G-AA-GACT
* * *
7850687 GGGATTAAACCGTGAGTCAGAAAAATAGATAACGACTGAGATTAAATCGCGAGTAAGAGATTAAT
1 GGGATTAAACCATGAGTCAGAAAAATAGA-AATGACTGGGATTAAATCGCGAGTAAGA-ATTAAT
*
7850752 GAAGATT
64 GAAGACT
*
7850759 GGGATTGAACCA
1 GGGATTAAACCA
7850771 CAAGTTAGAA
Statistics
Matches: 122, Mismatches: 24, Indels: 19
0.74 0.15 0.12
Matches are distributed among these distances:
69 3 0.02
70 4 0.03
71 44 0.36
72 43 0.35
73 22 0.18
74 3 0.02
75 3 0.02
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.22
Consensus pattern (70 bp):
GGGATTAAACCATGAGTCAGAAAAATAGAAATGACTGGGATTAAATCGCGAGTAAGAATTAATGA
AGACT
Found at i:7850781 original size:72 final size:70
Alignment explanation
Indices: 7850582--7850788 Score: 181
Period size: 72 Copynumber: 2.9 Consensus size: 70
7850572 AAATGGTTGG
* * * * * *
7850582 GATTAAATTGCGAGTCAAGAATTAATGATGGCTGAGATTGAACCACAAATCAGAAAAATAAAAGT
1 GATTAAATCGCGAGT-AAGAATTAATGAAGACTGGGATTGAACCACAAGTCAGAAAAATAAAAGC
*
7850647 GACTGG
65 GACTGA
* * ***
7850653 GATTAAACCGCGAGTTAAGAA--AATAGAAATGACTGGGATTAAACCGTGAGTCAGAAAAATAGA
1 GATTAAATCGCGAG-TAAGAATTAAT-G-AA-GACTGGGATTGAACCACAAGTCAGAAAAATA-A
7850716 TAA-CGACTGA
61 -AAGCGACTGA
* *
7850726 GATTAAATCGCGAGTAAGAGATTAATGAAGATTGGGATTGAACCACAAGTTAG--AAATAAAAGC
1 GATTAAATCGCGAGTAAGA-ATTAATGAAGACTGGGATTGAACCACAAGTCAGAAAAATAAAAGC
7850789 AAATGGGCTT
Statistics
Matches: 107, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
68 2 0.02
69 5 0.05
70 6 0.06
71 18 0.17
72 48 0.45
73 22 0.21
74 3 0.03
75 3 0.03
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.21
Consensus pattern (70 bp):
GATTAAATCGCGAGTAAGAATTAATGAAGACTGGGATTGAACCACAAGTCAGAAAAATAAAAGCG
ACTGA
Found at i:7861577 original size:4 final size:4
Alignment explanation
Indices: 7861557--7861597 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
7861547 GTCAATAGTG
* *
7861557 TAAA TAAAA TAAT TAAA TAAA TAAG TAAA TAAA TAAA TAAA
1 TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
7861598 CAAGTATAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 28 0.88
5 4 0.12
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:7863277 original size:15 final size:15
Alignment explanation
Indices: 7863259--7863290 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7863249 TTTTTAGGAA
7863259 TTTGAATTTTAAGGT
1 TTTGAATTTTAAGGT
*
7863274 TTTGAATTTTAGGGT
1 TTTGAATTTTAAGGT
7863289 TT
1 TT
7863291 GGGATTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (15 bp):
TTTGAATTTTAAGGT
Found at i:7863304 original size:22 final size:22
Alignment explanation
Indices: 7863273--7863320 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
7863263 AATTTTAAGG
7863273 TTTTGAATTTTAGGGTTTGGGA
1 TTTTGAATTTTAGGGTTTGGGA
* * *
7863295 TTTTGGATTTTTGGGTTTTGGA
1 TTTTGAATTTTAGGGTTTGGGA
7863317 TTTT
1 TTTT
7863321 TTGGTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.29, T:0.58
Consensus pattern (22 bp):
TTTTGAATTTTAGGGTTTGGGA
Found at i:7863313 original size:15 final size:15
Alignment explanation
Indices: 7863288--7863327 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
7863278 AATTTTAGGG
7863288 TTTGGGATTTTGGATT
1 TTTGGG-TTTTGGATT
7863304 TTTGGGTTTTGGATT
1 TTTGGGTTTTGGATT
*
7863319 TTTTGGTTT
1 TTTGGGTTT
7863328 AATTTTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.07, C:0.00, G:0.30, T:0.62
Consensus pattern (15 bp):
TTTGGGTTTTGGATT
Found at i:7863369 original size:7 final size:7
Alignment explanation
Indices: 7863344--7863401 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
7863334 AAGGTTTGAA
*
7863344 GGTTTGG
1 GGTTTAG
7863351 GGTTTAG
1 GGTTTAG
7863358 AGGTTTAG
1 -GGTTTAG
*
7863366 GGTTTTG
1 GGTTTAG
**
7863373 ATTTTAG
1 GGTTTAG
7863380 GGTTTAGAG
1 GGTTT--AG
7863389 GGTTTAG
1 GGTTTAG
7863396 GGTTTA
1 GGTTTA
7863402 ATTTATTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 27 0.66
8 7 0.17
9 7 0.17
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:7863405 original size:29 final size:29
Alignment explanation
Indices: 7863350--7863405 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
7863340 TGAAGGTTTG
*
7863350 GGGTTTAGAGGTTTAGGGTTTTGATTTTA
1 GGGTTTAGAGGTTTAGGGTTTTAATTTTA
7863379 GGGTTTAGAGGGTTTAGGG-TTTAATTT
1 GGGTTTAGA-GGTTTAGGGTTTTAATTT
7863406 ATTATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (29 bp):
GGGTTTAGAGGTTTAGGGTTTTAATTTTA
Found at i:7863426 original size:14 final size:14
Alignment explanation
Indices: 7863407--7863433 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7863397 GTTTAATTTA
7863407 TTATTATTATTTTG
1 TTATTATTATTTTG
7863421 TTATTATTATTTT
1 TTATTATTATTTT
7863434 TTAAAAGCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (14 bp):
TTATTATTATTTTG
Found at i:7863426 original size:17 final size:16
Alignment explanation
Indices: 7863404--7863435 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7863394 AGGGTTTAAT
7863404 TTATTATTATTATTTTG
1 TTATTATTATT-TTTTG
7863421 TTATTATTATTTTTT
1 TTATTATTATTTTTT
7863436 AAAAGCGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
TTATTATTATTTTTTG
Found at i:7863622 original size:21 final size:21
Alignment explanation
Indices: 7863598--7863637 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7863588 GACGATTTAG
*
7863598 TCAATGATTCGATTCGGTCGA
1 TCAACGATTCGATTCGGTCGA
* *
7863619 TCAACGGTTTGATTCGGTC
1 TCAACGATTCGATTCGGTC
7863638 TGATTGAGCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (21 bp):
TCAACGATTCGATTCGGTCGA
Found at i:7865811 original size:14 final size:14
Alignment explanation
Indices: 7865778--7865818 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
7865768 GCAAATTGGC
*
7865778 TTAATTTTTTA-TT
1 TTAATTATTTACTT
7865791 TTAATTATTTACTT
1 TTAATTATTTACTT
*
7865805 TTTATTA-TTACTT
1 TTAATTATTTACTT
7865818 T
1 T
7865819 AAAAGATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 17 0.68
14 8 0.32
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (14 bp):
TTAATTATTTACTT
Found at i:7867713 original size:21 final size:21
Alignment explanation
Indices: 7867645--7867727 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
7867635 ATGAATCCTC
*
7867645 AAATGATAACCTTTGAGTCTT
1 AAATGAAAACCTTTGAGTCTT
* ** *
7867666 AATTGAAAATTTTTAAGATGTTTTT
1 AAATGAAAACCTTT--GA-G-TCTT
7867691 AAATGAAAACCTTTGAGTCTT
1 AAATGAAAACCTTTGAGTCTT
* *
7867712 AAATGAGAATCTTTGA
1 AAATGAAAACCTTTGA
7867728 AAATTTTTGA
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
21 27 0.57
22 1 0.02
23 4 0.09
24 1 0.02
25 14 0.30
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.40
Consensus pattern (21 bp):
AAATGAAAACCTTTGAGTCTT
Found at i:7867769 original size:53 final size:54
Alignment explanation
Indices: 7867668--7867779 Score: 124
Period size: 53 Copynumber: 2.1 Consensus size: 54
7867658 TGAGTCTTAA
* * *
7867668 TTGAAAATTTTTAAGATGTTTTTAAATGAAAACCTTTGAGTCTTAAATGAGAATCT
1 TTGAAAATTTTT-AGATGTTTTCAAATGAAAACCTTTGAATCTTAAATGA-AACCT
*
7867724 TTGAAAATTTTT-GA-GTTTTCAAATGAGAATCC-TTGAAT-TTCAAATGAAACCT
1 TTGAAAATTTTTAGATGTTTTCAAATGA-AAACCTTTGAATCTT-AAATGAAACCT
7867776 TTGA
1 TTGA
7867780 GGTGTGAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
52 10 0.20
53 22 0.44
54 6 0.12
56 12 0.24
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (54 bp):
TTGAAAATTTTTAGATGTTTTCAAATGAAAACCTTTGAATCTTAAATGAAACCT
Found at i:7867993 original size:16 final size:16
Alignment explanation
Indices: 7867971--7868018 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
7867961 TGAAATTTTA
7867971 CAAATCTGAATTCTTG
1 CAAATCTGAATTCTTG
*
7867987 CATATCTGTAATT-TTG
1 CAAATCTG-AATTCTTG
* *
7868003 TAAATTTGAATTCTTG
1 CAAATCTGAATTCTTG
7868019 TGAAATTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.15
16 18 0.69
17 4 0.15
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (16 bp):
CAAATCTGAATTCTTG
Found at i:7868236 original size:41 final size:41
Alignment explanation
Indices: 7868176--7868931 Score: 627
Period size: 41 Copynumber: 18.0 Consensus size: 41
7868166 AATTATCGAT
* * *
7868176 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTTTGTTTAGAT
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * *
7868217 AAACTTTTTATTTTTCAAAGTTGTTGTACCTCTGTTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
7868258 GAGCATTTTACTTTTT-AAAGTTATGGTGCCTCTGTTTAGAG
1 GAGCATTTTA-TTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* ** ** *
7868299 AAGCATTTTATTATTTCAAAAGTTGTTAAGCCTCTACTTAGAT
1 GAGCATTTTATT-TTTC-AAAGTTGTTGTGCCTCTGTTTAGAG
* * * * * * * *
7868342 GAGCCTTCTATTTTCCAAAATTATGGTGCCTTTGTTTAAAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * * *
7868383 AAGCATTTTATTTTTTAAAAGTTATTGTGCCTTTGTTTAGAT
1 GAGCATTTTA-TTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
7868425 GAGCCTTTTATTTTTCAAAGTTGTCGTGCAGTTGTTGTGCCTTTGTTTAGAG
1 GAGCATTTTATTTTTC-AA----------AGTTGTTGTGCCTCTGTTTAGAG
* * * *
7868477 GAACTTTTTATTTTTTAAAGTTGTTGTACCTCTGTTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * *
7868518 GAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* ** ** *
7868559 AAGCATTTTATTTTTTCAAAAGTTGTTAAGCCTCTACTTAGAA
1 GAGCATTTTA-TTTTTC-AAAGTTGTTGTGCCTCTGTTTAGAG
* * * * * *
7868602 GAGCCTTTTATTTTTAAAAGTTATGGTGCATTTGTTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * *
7868643 AAGCATTTTATTTTTTAAAAGTTGTTGAGCCTCTGTTTAGAG
1 GAGCATTTTA-TTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
7868685 GAGCATTTATTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAG
1 GAGCATTT-TATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * *
7868727 GAGCCTTTTATTTTTCAAAGTTTGTTGTGCATCTATTTAAAG
1 GAGCATTTTATTTTTCAAAG-TTGTTGTGCCTCTGTTTAGAG
* ** * * *
7868769 GAACCCTTTATTTTTCAAAGTTGTTATGTCTCTATTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* ** *
7868810 GAGCCTTTTATTTTTCAAAGTCATTGTGCCGC-GATTTAGAG
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTG-TTTAGAG
* * * *
7868851 GAGC-TATTTATTTTTTAAAGTTGTGGTGCATTTGTTTAGAG
1 GAGCAT-TTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
7868892 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGA
1 GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGA
7868932 AGGGCTTTGT
Statistics
Matches: 568, Mismatches: 122, Indels: 50
0.77 0.16 0.07
Matches are distributed among these distances:
40 3 0.01
41 316 0.56
42 157 0.28
43 56 0.10
51 2 0.00
52 34 0.06
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (41 bp):
GAGCATTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
Found at i:7868366 original size:84 final size:82
Alignment explanation
Indices: 7868176--7868931 Score: 560
Period size: 84 Copynumber: 9.0 Consensus size: 82
7868166 AATTATCGAT
* * * * *
7868176 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTTTGTTTAGATAAACTTTTTATTTTTC-AAAGTTG
1 GAGCCTTTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTTG
*
7868240 TTGTA-CCTCTGTTTAGAG
65 TT-AAGCCTCTGTTTAGAG
* * *
7868258 GAGCATTTTACTTTTTAAAGTTATGGTGCCTCTGTTTAGAGAAGCATTTTATTATTTCAAAAGTT
1 GAGCCTTTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATT-TTTCAAAAGTT
** *
7868323 GTTAAGCCTCTACTTAGAT
64 GTTAAGCCTCTGTTTAGAG
* * * * *
7868342 GAGCCTTCTATTTTCCAAAATTATGGTGCCTTTGTTTAAAGAAGCATTTTATTTTTTAAAAGTTA
1 GAGCCTTTTATTTT-CAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTTG
** * *
7868407 TTGTGCCTTTGTTTAGAT
65 TTAAGCCTCTGTTTAGAG
*
7868425 GAGCCTTTTATTTTTCAAAGTTGTCGTGCAGTTGTTGTGCCTTTGTTTAGAGGAA-CTTTTTATT
1 GAGCCTTTTA-TTTTCAAA---GT--T--A--TG--GTGCCTTTGTTTAGA-GAAGCATTTTATT
* *
7868489 TTT-TAAAGTTGTTGTA-CCTCTGTTTAGAG
53 TTTCAAAAGTTGTT-AAGCCTCTGTTTAGAG
* * * *
7868518 GAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTTATTTTTTCAAAAGTT
1 GAGCCTTTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTA-TTTTTCAAAAGTT
** *
7868583 GTTAAGCCTCTACTTAGAA
64 GTTAAGCCTCTGTTTAGAG
* * *
7868602 GAGCCTTTTATTTTTAAAAGTTATGGTGCATTTGTTTAGAGAAGCATTTTATTTTTTAAAAGTTG
1 GAGCCTTTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTTG
*
7868667 TTGAGCCTCTGTTTAGAG
65 TTAAGCCTCTGTTTAGAG
* * * * * *
7868685 GAGCATTTATTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTC-AAAGTT
1 GAGC-CTT-TTATTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAG-T
** * * *
7868749 TGTTGTGCATCTATTTAAAG
63 TGTTAAGCCTCTGTTTAGAG
* * * ** * * * * * **
7868769 GAACCCTTTATTTTTCAAAGTTGTTATGTCTCTATTTAGAGGAGCCTTTTATTTTTC-AAAGTCA
1 GAGCCTTTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTTG
** *
7868833 TTGTGCCGC-GATTTAGAG
65 TTAAGCCTCTG-TTTAGAG
* * * * *
7868851 GAG-CTATTTATTTTTTAAAGTTGTGGTGCATTTGTTTAGAGGAGCAATTTATTTTTC-AAAGTT
1 GAGCCT-TTTA-TTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTT
***
7868914 GTGGTGCCTCTGTTTAGA
64 GTTAAGCCTCTGTTTAGA
7868932 AGGGCTTTGT
Statistics
Matches: 544, Mismatches: 101, Indels: 58
0.77 0.14 0.08
Matches are distributed among these distances:
81 4 0.01
82 141 0.26
83 134 0.25
84 191 0.35
85 2 0.00
86 1 0.00
88 2 0.00
90 3 0.01
92 2 0.00
93 36 0.07
94 25 0.05
95 3 0.01
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (82 bp):
GAGCCTTTTATTTTCAAAGTTATGGTGCCTTTGTTTAGAGAAGCATTTTATTTTTCAAAAGTTGT
TAAGCCTCTGTTTAGAG
Found at i:7868469 original size:52 final size:52
Alignment explanation
Indices: 7868402--7868500 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
7868392 ATTTTTTAAA
* *
7868402 AGTTATTGTGCCTTTGTTTAGATGAGCCTTTTATTTTTCAAAGTTGTCGTGC
1 AGTTATTGTGCCTTTGTTTAGAGGAACCTTTTATTTTTCAAAGTTGTCGTGC
* * *
7868454 AGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTTAAAGTTGT
1 AGTTATTGTGCCTTTGTTTAGAGGAACCTTTTATTTTTCAAAGTTGT
7868501 TGTACCTCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.18, C:0.10, G:0.21, T:0.51
Consensus pattern (52 bp):
AGTTATTGTGCCTTTGTTTAGAGGAACCTTTTATTTTTCAAAGTTGTCGTGC
Found at i:7868533 original size:93 final size:94
Alignment explanation
Indices: 7868367--7868546 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 94
7868357 CAAAATTATG
* * * *
7868367 GTGCCTTTGTTTAAAGAAGCATTTTATTTTTTAAAAGTTATTGTGCCTTTGTTTAGATGAGCCTT
1 GTGCCTTTGTTTAAAGAAGCATTTTATTTTTTAAAAGTTATTGTACCTCTGTTTAGAGGAGCATT
*
7868432 TTATTTTTCAAAGTTGTCGTGCAGTTGTT
66 TTACTTTTCAAAGTTGTCGTGCAGTTGTT
* * *
7868461 GTGCCTTTGTTTAGAGGAA-CTTTTTATTTTTT-AAAGTTGTTGTACCTCTGTTTAGAGGAGCAT
1 GTGCCTTTGTTTA-AAGAAGCATTTTATTTTTTAAAAGTTATTGTACCTCTGTTTAGAGGAGCAT
*
7868524 TTTACTTTTCAAAGTTGTGGTGC
65 TTTACTTTTCAAAGTTGTCGTGC
7868547 CTCTATTTAG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
93 47 0.62
94 25 0.33
95 4 0.05
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.48
Consensus pattern (94 bp):
GTGCCTTTGTTTAAAGAAGCATTTTATTTTTTAAAAGTTATTGTACCTCTGTTTAGAGGAGCATT
TTACTTTTCAAAGTTGTCGTGCAGTTGTT
Found at i:7868655 original size:260 final size:250
Alignment explanation
Indices: 7868186--7868931 Score: 908
Period size: 260 Copynumber: 3.0 Consensus size: 250
7868176 GAGCCTTTTA
**
7868186 TTTTTCAAAGTTGTTGTGCCTTTGTTTAGATAAACTTTTTATTTTTCAAAGTTGTTGTACCTCTG
1 TTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTCAAAGTTGTTGTACCTCTG
* * * *
7868251 TTTAGAGGAGCATTTTACTTTTTAAAGTTATGGTGCCTCTGTTTAGAGAAGCATTTTATTATTTC
66 TTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTTATTTTTTC
* * * *
7868316 AAAAGTTGTTAAGCCTCTACTTAGATGAGCCTTCTATTTTCCAAAA-TTATGGTGCCTTTGTTTA
131 AAAAGTTGTTAAGCCTCTACTTAGAAGAGCCTTTTATTTT-TAAAAGTTATGGTGCATTTGTTTA
* * * * *
7868380 AAGAAGCATTTTATTTTTTAAAAGTTATTGTGCCTTTGTTTAGATGAGCCTTTTATTT
195 GAGAAGCATTTTATTTTTTAAAAGTTGTTGTGCCTCTGTTTAGAGGAG-CATTTA-TT
** *
7868438 TTCAAAGTTGTCGTGCAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTTAAAGTTGTTG
1 TT-----TT-TC--AAAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTCAAAGTTGTTG
7868503 TACCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTT
58 TACCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTT
7868568 ATTTTTTCAAAAGTTGTTAAGCCTCTACTTAGAAGAGCCTTTTATTTTTAAAAGTTATGGTGCAT
123 ATTTTTTCAAAAGTTGTTAAGCCTCTACTTAGAAGAGCCTTTTATTTTTAAAAGTTATGGTGCAT
*
7868633 TTGTTTAGAGAAGCATTTTATTTTTTAAAAGTTGTTGAGCCTCTGTTTAGAGGAGCATTTATT
188 TTGTTTAGAGAAGCATTTTATTTTTTAAAAGTTGTTGTGCCTCTGTTTAGAGGAGCATTTATT
* * * *
7868696 TTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTTGTTGTGCATCT
1 TTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTCAAAG-TTGTTGTACCTCT
* * * ** * ** * * *
7868761 ATTTAAAGGAACCCTTTATTTTTCAAAGTTGTTATGTCTCTATTTAGAGGAGCCTTTTA-TTTTT
65 GTTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTTATTTTTT
** ** * * * * * *
7868825 C-AAAGTCATTGTGCCGCGATTTAGAGGAG-CTATTTATTTTTTAAAGTTGTGGTGCATTTGTTT
130 CAAAAGTTGTTAAGCCTCTACTTAGAAGAGCCT-TTTATTTTTAAAAGTTATGGTGCATTTGTTT
* * * *
7868888 AGAGGAGCAATTTA-TTTTTCAAAGTTGTGGTGCCTCTGTTTAGA
194 AGAGAAGCATTTTATTTTTTAAAAGTTGTTGTGCCTCTGTTTAGA
7868932 AGGGCTTTGT
Statistics
Matches: 431, Mismatches: 52, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
248 29 0.07
249 61 0.14
250 46 0.11
251 59 0.14
252 4 0.01
253 2 0.00
257 2 0.00
258 6 0.01
259 9 0.02
260 213 0.49
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (250 bp):
TTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTTTTCAAAGTTGTTGTACCTCTG
TTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCATTTTATTTTTTC
AAAAGTTGTTAAGCCTCTACTTAGAAGAGCCTTTTATTTTTAAAAGTTATGGTGCATTTGTTTAG
AGAAGCATTTTATTTTTTAAAAGTTGTTGTGCCTCTGTTTAGAGGAGCATTTATT
Found at i:7868725 original size:125 final size:123
Alignment explanation
Indices: 7868176--7868931 Score: 550
Period size: 125 Copynumber: 6.0 Consensus size: 123
7868166 AATTATCGAT
* * ** * * *
7868176 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTTTGTTTAGATAAACTTTTTATTTTTCAAAGTTGT
1 GAGCATTTTTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTTAAAGTTGT
* * * * * * *
7868241 TGTACCTCTGTTTAGAGGAGCATTTTACTTTTT-AAAGTTATGGTGCCTCTGTTTAGAG
66 GGTGCATCTGTTTAGAGAAGCATTTTA-TTTTTCAAAGTTGTGGAGCCTCTATTTAGAG
* * ** * ** * * ** *
7868299 AAGCATTTTATTATTTCAAAAGTTGTTAAGCCTCTACTTAGATGAGCCTTCTATTTTCCAAAATT
1 GAGCATTTT-TTTTTTC-AAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTTAAAGTT
* * * * * * * * * * *
7868364 ATGGTGCCTTTGTTTAAAGAAGCATTTTATTTTTTAAAAGTTATTGTGCCTTTGTTTAGAT
64 GTGGTGCATCTGTTTAGAGAAGCATTTTA-TTTTTCAAAGTTGTGGAGCCTCTATTTAGAG
* * * *
7868425 GAGCCTTTTATTTTTCAAAGTTGTCGTGCAGTTGTTGTGCCTTTGTTTAGAGGAACTTTTTATTT
1 GAGCATTTTTTTTTTC-AA----------AGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTT
* * * * * *
7868490 TTTAAAGTTGTTGTACCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTT
55 TTTAAAGTTGTGGTGCATCTGTTTAGAGAAGCATTTTATTTTTCAAAGTTGTGGAGCCTCTATTT
7868555 AGAG
120 AGAG
* ** * ** * *
7868559 AAGCATTTTATTTTTTCAAAAGTTGTTAAGCCTCTACTTAGAAGAGCCTTTTATTTTTAAAAGTT
1 GAGCATTTT-TTTTTTC-AAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTTAAAGTT
* * * * *
7868624 ATGGTGCATTTGTTTAGAGAAGCATTTTATTTTTTAAAAGTTGTTGAGCCTCTGTTTAGAG
64 GTGGTGCATCTGTTTAGAGAAGCATTTTA-TTTTTCAAAGTTGTGGAGCCTCTATTTAGAG
*
7868685 GAGCATTTATTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTT
1 GAGCATTT-TTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTTAAAG-TT
* * * ** * *
7868750 GTTGTGCATCTATTTAAAGGAA-CCCTTTATTTTTCAAAGTTGT-TATGTCTCTATTTAGAG
64 GTGGTGCATCTGTTTAGA-GAAGCATTTTATTTTTCAAAGTTGTGGA-GCCTCTATTTAGAG
* * ** **
7868810 GAGCCTTTTATTTTTCAAAGTCATTGTGCC-GCGATTTAGAGGAG-CTATTTATTTTTTAAAGTT
1 GAGCATTTTTTTTTTCAAAGTTGTTGTGCCTTTG-TTTAGAGGAGCCT-TTTATTTTTTAAAGTT
* * * * *
7868873 GTGGTGCATTTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGA
64 GTGGTGCATCTGTTTAGAGAAGCATTTTATTTTTCAAAGTTGTGGAGCCTCTATTTAGA
7868932 AGGGCTTTGT
Statistics
Matches: 496, Mismatches: 114, Indels: 46
0.76 0.17 0.07
Matches are distributed among these distances:
122 2 0.00
123 56 0.11
124 48 0.10
125 201 0.41
126 89 0.18
127 4 0.01
134 31 0.06
135 65 0.13
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (123 bp):
GAGCATTTTTTTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCCTTTTATTTTTTAAAGTTGT
GGTGCATCTGTTTAGAGAAGCATTTTATTTTTCAAAGTTGTGGAGCCTCTATTTAGAG
Found at i:7870138 original size:17 final size:17
Alignment explanation
Indices: 7870116--7870153 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
7870106 TTTGCAAAAC
7870116 AAAAAATATAAAATATA
1 AAAAAATATAAAATATA
7870133 AAAAAATATAAAATATA
1 AAAAAATATAAAATATA
7870150 AAAA
1 AAAA
7870154 TTTTAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATATAAAATATA
Found at i:7871428 original size:8 final size:8
Alignment explanation
Indices: 7871415--7871471 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
7871405 GTAAAAAAAA
7871415 TTTTATTT
1 TTTTATTT
7871423 TTTTA-TT
1 TTTTATTT
**
7871430 TTGAATTT
1 TTTTATTT
7871438 TTTTATTT
1 TTTTATTT
*
7871446 TTTTATAT
1 TTTTATTT
*
7871454 TATTATCTT
1 TTTTAT-TT
*
7871463 TGTTATTT
1 TTTTATTT
7871471 T
1 T
7871472 AAATATATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
7 5 0.13
8 28 0.72
9 6 0.15
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.77
Consensus pattern (8 bp):
TTTTATTT
Found at i:7871880 original size:24 final size:23
Alignment explanation
Indices: 7871840--7871887 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
7871830 ACCTTAAACA
* *
7871840 CTAATTTTTTAATTTTCAAAATC
1 CTAATTTTTAAAATTTCAAAATC
7871863 CTAAGTTTTTAAAATTTCAAAATC
1 CTAA-TTTTTAAAATTTCAAAATC
7871887 C
1 C
7871888 CTGAAATCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.46
Consensus pattern (23 bp):
CTAATTTTTAAAATTTCAAAATC
Found at i:7878317 original size:1 final size:1
Alignment explanation
Indices: 7878313--7878374 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
7878303 GATGGGGCAT
* * * * * * * *
7878313 AAAAAATAAATAAAAAATAAATAAAAACAAAAAAAAAAACAAAAAAAGAAGAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7878375 GGGACATATT
Statistics
Matches: 45, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.87, C:0.03, G:0.03, T:0.06
Consensus pattern (1 bp):
A
Found at i:7878327 original size:11 final size:11
Alignment explanation
Indices: 7878311--7878339 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7878301 AGGATGGGGC
7878311 ATAAAAAATAA
1 ATAAAAAATAA
7878322 ATAAAAAATAA
1 ATAAAAAATAA
7878333 ATAAAAA
1 ATAAAAA
7878340 CAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
ATAAAAAATAA
Found at i:7878339 original size:22 final size:21
Alignment explanation
Indices: 7878311--7878374 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
7878301 AGGATGGGGC
* *
7878311 ATAAAAAATAAATAAAAAATAA
1 ATAAAAAA-AAAAAAAAAACAA
7878333 ATAAAAACAAAAAAAAAAACAA
1 ATAAAAA-AAAAAAAAAAACAA
*
7878355 AAAAAGAAGAAAAAAAAAAA
1 ATAAA-AA-AAAAAAAAAAA
7878375 GGGACATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.08
Consensus pattern (21 bp):
ATAAAAAAAAAAAAAAAACAA
Found at i:7878350 original size:23 final size:23
Alignment explanation
Indices: 7878324--7878374 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
7878314 AAAAATAAAT
* *
7878324 AAAAAATAAATAAA-AACAAAAA
1 AAAAAACAAAAAAAGAACAAAAA
*
7878346 AAAAAACAAAAAAAGAAGAAAAA
1 AAAAAACAAAAAAAGAACAAAAA
7878369 AAAAAA
1 AAAAAA
7878375 GGGACATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.88, C:0.04, G:0.04, T:0.04
Consensus pattern (23 bp):
AAAAAACAAAAAAAGAACAAAAA
Found at i:7880425 original size:23 final size:23
Alignment explanation
Indices: 7880395--7880449 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
7880385 CCGGGTAATC
7880395 TGTAAGACCTCCGGACATGATTT
1 TGTAAGACCTCCGGACATGATTT
*
7880418 TGTAAGACCTCCGGGCATGATTT
1 TGTAAGACCTCCGGACATGATTT
7880441 T-TAAGACCT
1 TGTAAGACCT
7880450 TCGAGCATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (23 bp):
TGTAAGACCTCCGGACATGATTT
Found at i:7880448 original size:22 final size:22
Alignment explanation
Indices: 7880371--7880463 Score: 91
Period size: 22 Copynumber: 4.3 Consensus size: 22
7880361 AAGATTTTGA
*
7880371 GATTTGTAAGACCTCCGGG--T
1 GATTTTTAAGACCTCCGGGCAT
* * * *
7880391 AATCTGTAAGACCTCCGGACAT
1 GATTTTTAAGACCTCCGGGCAT
7880413 GATTTTGTAAGACCTCCGGGCAT
1 GATTTT-TAAGACCTCCGGGCAT
* *
7880436 GATTTTTAAGACCTTCGAGCAT
1 GATTTTTAAGACCTCCGGGCAT
*
7880458 AATTTT
1 GATTTT
7880464 GATTCGTGGT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 16 0.27
22 23 0.38
23 21 0.35
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (22 bp):
GATTTTTAAGACCTCCGGGCAT
Found at i:7880683 original size:23 final size:23
Alignment explanation
Indices: 7880653--7880722 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 23
7880643 TATCCCAGTC
*
7880653 AATTCTGTAAGACCTCCGGGCAT
1 AATTCTGTAAGACCTCCGAGCAT
* *
7880676 AATTCTGTAAGAACTCCAAGCAT
1 AATTCTGTAAGACCTCCGAGCAT
* * *
7880699 GATT-TTTAAGACCTCCGAACAT
1 AATTCTGTAAGACCTCCGAGCAT
7880721 AA
1 AA
7880723 ATTCGATTCG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 15 0.39
23 23 0.61
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (23 bp):
AATTCTGTAAGACCTCCGAGCAT
Found at i:7880739 original size:132 final size:132
Alignment explanation
Indices: 7880393--7880799 Score: 566
Period size: 132 Copynumber: 3.1 Consensus size: 132
7880383 CTCCGGGTAA
* * * * * *
7880393 TCTGTAAGACCTCCGGACATGATTTTGTAAGACCTCCGGGCATGATTTTTAAGACCTTCGAGCAT
1 TCTGTAAGACCTCCGGGCATAATTCTGTAAGAACTCCGAGCATGATTTTTAAGACCTCCGAGCAT
* * * * *
7880458 AATTTTGATTCGTGGTATTGTCCCGATCGATTCTTTATTTTTGACTTACGGTGTTATCCCAGTCA
66 AATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTTTGACTTACGGTGTTATCCCAGTCA
7880523 AT
131 AT
* * * * *
7880525 TCTGTAAAACCTCC-AGCATAATTCTGTAA-AACCTTCGAGCATGATTTTTAAGACCTCCGGGTA
1 TCTGTAAGACCTCCGGGCATAATTCTGTAAGAA-CTCCGAGCATGATTTTTAAGACCTCCGAGCA
** * *
7880588 TAATTTCGATTCGCGATGTTGTTTCGATCTATTTTTTATTTTTGACTTACGGTGTTATCCCAGTC
65 TAATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTTTGACTTACGGTGTTATCCCAGTC
7880653 AAT
130 AAT
* *
7880656 TCTGTAAGACCTCCGGGCATAATTCTGTAAGAACTCCAAGCATGATTTTTAAGACCTCCGAACAT
1 TCTGTAAGACCTCCGGGCATAATTCTGTAAGAACTCCGAGCATGATTTTTAAGACCTCCGAGCAT
* * *
7880721 AAATTCGATTCGCGATGTTGTCCCAATCAATTCTTTATTTTTGACTTGCGGTGTTATCCCAGTCA
66 AATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTTTGACTTACGGTGTTATCCCAGTCA
7880786 AT
131 AT
7880788 TCTGTAAGACCT
1 TCTGTAAGACCT
7880800 TCGGACATGA
Statistics
Matches: 239, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.00
131 110 0.46
132 126 0.53
133 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (132 bp):
TCTGTAAGACCTCCGGGCATAATTCTGTAAGAACTCCGAGCATGATTTTTAAGACCTCCGAGCAT
AATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTTTGACTTACGGTGTTATCCCAGTCA
AT
Found at i:7880931 original size:23 final size:22
Alignment explanation
Indices: 7880905--7880976 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
7880895 ATTCTGTAAA
*
7880905 ACCTCCGGGCATGATTTTGTAAG
1 ACCTCCGGGCATGA-TTTCTAAG
** *
7880928 ACCTCCGAACATAATTTCTAAG
1 ACCTCCGGGCATGATTTCTAAG
*
7880950 ATCTCCGAGG-ATGATTTCTAAG
1 ACCTCCG-GGCATGATTTCTAAG
7880972 ACCTC
1 ACCTC
7880977 TGGGTATAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
22 28 0.72
23 11 0.28
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (22 bp):
ACCTCCGGGCATGATTTCTAAG
Found at i:7880944 original size:109 final size:109
Alignment explanation
Indices: 7880676--7880941 Score: 372
Period size: 109 Copynumber: 2.4 Consensus size: 109
7880666 CTCCGGGCAT
** *
7880676 AATTCTGTAAGAA-CTCCAAGCATGATTTTTAAGACCTCCGAACATAAATTCGATTCGCGATGTT
1 AATTCTGTAA-AACCTCCGGGCATGATTTTTAAGACCTCCGAACATAAATTTGATTCGCGATGTT
* *
7880740 GTCCCAATCAATTCTTTATTTTTGACTTGCGGTGTTATCCCAGTC
65 ATCCCAATCAATTCTTTATTTATGACTTGCGGTGTTATCCCAGTC
* * * ** * *
7880785 AATTCTGTAAGACCTTCGGACATGATTTTTAAGACCTCCGGGCATAAATTTGATTCGTGGTGTTA
1 AATTCTGTAAAACCTCCGGGCATGATTTTTAAGACCTCCGAACATAAATTTGATTCGCGATGTTA
* * *
7880850 TCCCAATCGATTTTTTATTTATGACTTGTGGTGTTATCCCAGTC
66 TCCCAATCAATTCTTTATTTATGACTTGCGGTGTTATCCCAGTC
7880894 AATTCTGTAAAACCTCCGGGCATGATTTTGTAAGACCTCCGAACATAA
1 AATTCTGTAAAACCTCCGGGCATGATTTT-TAAGACCTCCGAACATAA
7880942 TTTCTAAGAT
Statistics
Matches: 135, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
108 1 0.01
109 118 0.87
110 16 0.12
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (109 bp):
AATTCTGTAAAACCTCCGGGCATGATTTTTAAGACCTCCGAACATAAATTTGATTCGCGATGTTA
TCCCAATCAATTCTTTATTTATGACTTGCGGTGTTATCCCAGTC
Found at i:7881078 original size:22 final size:22
Alignment explanation
Indices: 7881050--7881167 Score: 152
Period size: 22 Copynumber: 5.4 Consensus size: 22
7881040 GTTAATTCTG
7881050 TAAGACCTCCGAGCATGATTTT
1 TAAGACCTCCGAGCATGATTTT
*
7881072 TAAGACCTTC-AG-ATGATTTT
1 TAAGACCTCCGAGCATGATTTT
* *
7881092 GTAAGACCTCCGAGCATAATTTC
1 -TAAGACCTCCGAGCATGATTTT
7881115 TAAGACCTCC-AGGCATGATTTT
1 TAAGACCTCCGA-GCATGATTTT
* *
7881137 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGAGCATGATTTT
7881159 TAAGACCTC
1 TAAGACCTC
7881168 TAGGCATAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
20 8 0.10
21 12 0.14
22 57 0.69
23 6 0.07
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCGAGCATGATTTT
Found at i:7881158 original size:44 final size:45
Alignment explanation
Indices: 7881048--7881174 Score: 188
Period size: 44 Copynumber: 2.9 Consensus size: 45
7881038 CAGTTAATTC
* *
7881048 TGTAAGACCTCCGAGCATGATTTTTAAGACCTTCA-G-ATGATTT
1 TGTAAGACCTCCGAGCATGATTTCTAAGACCTCCAGGCATGATTT
*
7881091 TGTAAGACCTCCGAGCATAATTTCTAAGACCTCCAGGCATGATTT
1 TGTAAGACCTCCGAGCATGATTTCTAAGACCTCCAGGCATGATTT
* *
7881136 T-TAAGACCTCCGGGCATGATTTCTAAGACCTCTAGGCAT
1 TGTAAGACCTCCGAGCATGATTTCTAAGACCTCCAGGCAT
7881175 AAATTTGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
43 32 0.42
44 36 0.47
45 8 0.11
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
TGTAAGACCTCCGAGCATGATTTCTAAGACCTCCAGGCATGATTT
Found at i:7881274 original size:22 final size:23
Alignment explanation
Indices: 7881239--7881412 Score: 118
Period size: 23 Copynumber: 7.9 Consensus size: 23
7881229 CAATCAATTT
*
7881239 TGTAA-ACCTCCGGACATGATT-
1 TGTAAGACCTTCGGACATGATTC
* * *
7881260 TTTAAGACTTTCGG--ATAATTC
1 TGTAAGACCTTCGGACATGATTC
** *
7881281 TGTAAGA-CTTCCAAGCATGATTA
1 TGTAAGACCTTCGGA-CATGATTC
*
7881304 TGTAAGACCTTCGGGCATGACTT-
1 TGTAAGACCTTCGGACATGA-TTC
*
7881327 T-TAAAACCTTCGGACATGATT-
1 TGTAAGACCTTCGGACATGATTC
* *
7881348 TTTAAGACCTTCGG--ATAATTC
1 TGTAAGACCTTCGGACATGATTC
*
7881369 TGTAAGACCTTCGGGCATGATTC
1 TGTAAGACCTTCGGACATGATTC
* *
7881392 TATAAGA-CTTCTGGGCATGAT
1 TGTAAGACCTTC-GGACATGAT
7881413 GTCTAAAACC
Statistics
Matches: 121, Mismatches: 20, Indels: 22
0.74 0.12 0.13
Matches are distributed among these distances:
20 13 0.11
21 26 0.21
22 37 0.31
23 39 0.32
24 6 0.05
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (23 bp):
TGTAAGACCTTCGGACATGATTC
Found at i:7881312 original size:191 final size:190
Alignment explanation
Indices: 7880894--7881357 Score: 558
Period size: 191 Copynumber: 2.4 Consensus size: 190
7880884 TATCCCAGTC
* * * * * *
7880894 AATTCTGTAAAACCTCCGGGCATGATTTTGTAAGACCTCCGAACATAATTTCTAAGATCTCCGAG
1 AATTCTGTAAGACCTCCGAGCATGA-TTTGTAAGACCTCCG-GCATGATTTTTAAGACCTCCG-G
* * *
7880959 G-ATGATTTCTAAGACCTCTGGGTATAAATTTGATTCGCGGTGTTATCCAAATCAATTCTATGAT
63 GCATGATTTCTAAGACCTCTAGGCATAAATTTGATTCGCGGTGTTATCCAAACCAATTCTATGAT
* * *
7881023 TTTAACTTGTTATCTCAGTTAATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTCAGAT
128 TTTAACTTGTTATCCCAATCAATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTCAGAT
* * * *
7881086 GATTTTGTAAGACCTCCGAGCATAATTTCTAAGACCTCCAGGCATGATTTTTAAGACCTCCGGGC
1 AATTCTGTAAGACCTCCGAGCATGATTTGTAAGACCTCC-GGCATGATTTTTAAGACCTCCGGGC
** *
7881151 ATGATTTCTAAGACCTCTAGGCATAAATTTGATT-GACGGTGTTATCCCGACCAATTTTATGATT
65 ATGATTTCTAAGACCTCTAGGCATAAATTTGATTCG-CGGTGTTATCCAAACCAATTCTATGATT
* * *
7881215 TTAACTTGTTATCCCAATCAATTTTGTAA-ACCTCCG-GACATGATTTTTAAGACTTTCGGAT
129 TTAACTTGTTATCCCAATCAATTCTGTAAGACCTCCGAG-CATGATTTTTAAGACCTTCAGAT
* * * * * * *
7881276 AATTCTGTAAGACTTCCAAGCATGATTATGTAAGACCTTCGGGCATGACTTTTAAAACCTTCGGA
1 AATTCTGTAAGACCTCCGAGCATGATT-TGTAAGACC-TCCGGCATGATTTTTAAGACCTCCGGG
*
7881341 CATGATTTTTAAGACCT
64 CATGATTTCTAAGACCT
7881358 TCGGATAATT
Statistics
Matches: 232, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
189 1 0.00
190 53 0.23
191 155 0.67
192 23 0.10
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (190 bp):
AATTCTGTAAGACCTCCGAGCATGATTTGTAAGACCTCCGGCATGATTTTTAAGACCTCCGGGCA
TGATTTCTAAGACCTCTAGGCATAAATTTGATTCGCGGTGTTATCCAAACCAATTCTATGATTTT
AACTTGTTATCCCAATCAATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTCAGAT
Found at i:7881321 original size:23 final size:22
Alignment explanation
Indices: 7881237--7881439 Score: 136
Period size: 22 Copynumber: 9.3 Consensus size: 22
7881227 CCCAATCAAT
* *
7881237 TTTGTAA-ACCTCCGGACATGA
1 TTTGTAAGACCTTCGGGCATGA
* * *
7881258 TTTTTAAGACTTTC-GG-ATAA
1 TTTGTAAGACCTTCGGGCATGA
**
7881278 TTCTGTAAGA-CTTCCAAGCATGA
1 TT-TGTAAGACCTT-CGGGCATGA
7881301 TTATGTAAGACCTTCGGGCATGA
1 TT-TGTAAGACCTTCGGGCATGA
* *
7881324 CTTT-TAAAACCTTCGGACATGA
1 -TTTGTAAGACCTTCGGGCATGA
* *
7881346 TTTTTAAGACCTTC-GG-ATAA
1 TTTGTAAGACCTTCGGGCATGA
7881366 TTCTGTAAGACCTTCGGGCATGA
1 TT-TGTAAGACCTTCGGGCATGA
*
7881389 TTCTATAAGA-CTTCTGGGCATGA
1 TT-TGTAAGACCTTC-GGGCATGA
* * * *
7881412 TGTCTAAAACCTTCGAGCATGA
1 TTTGTAAGACCTTCGGGCATGA
7881434 -TTGTAA
1 TTTGTAA
7881440 CTTCCAATTC
Statistics
Matches: 143, Mismatches: 26, Indels: 26
0.73 0.13 0.13
Matches are distributed among these distances:
20 12 0.08
21 33 0.23
22 48 0.34
23 45 0.31
24 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (22 bp):
TTTGTAAGACCTTCGGGCATGA
Found at i:7881361 original size:88 final size:88
Alignment explanation
Indices: 7881242--7881435 Score: 261
Period size: 88 Copynumber: 2.2 Consensus size: 88
7881232 TCAATTTTGT
* * *
7881242 AAACCTCCGGACATGATTTTTAAGACTTTCGGATAATTCTGTAAGA-CTTCCAAGCATGATTATG
1 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTT-CAAGCATGATTATA
*
7881306 TAAGACCTTC-GGGCATGACT-TTTA
65 TAAGA-CTTCTGGGCATGA-TGTCTA
** *
7881330 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCGGGCATGATTCTAT
1 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCAAGCATGATTATAT
7881395 AAGACTTCTGGGCATGATGTCTA
66 AAGACTTCTGGGCATGATGTCTA
7881418 AAACCTTC-GAGCATGATT
1 AAACCTTCGGA-CATGATT
7881436 GTAACTTCCA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
87 7 0.07
88 85 0.89
89 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (88 bp):
AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCAAGCATGATTATAT
AAGACTTCTGGGCATGATGTCTA
Found at i:7881561 original size:22 final size:22
Alignment explanation
Indices: 7881534--7881575 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
7881524 TTCAATCGAT
7881534 TTTGTAAGACCTCCGAGCATGA
1 TTTGTAAGACCTCCGAGCATGA
7881556 TTTGTAAGACCTCCGAGCAT
1 TTTGTAAGACCTCCGAGCAT
7881576 AAAATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (22 bp):
TTTGTAAGACCTCCGAGCATGA
Found at i:7881717 original size:47 final size:47
Alignment explanation
Indices: 7881643--7882475 Score: 887
Period size: 47 Copynumber: 17.0 Consensus size: 47
7881633 AATTTGAAAA
* *
7881643 AGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTC
1 AGATGA-AA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7881692 AGATGATATTTTAAAGTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* * *
7881744 AAGAAGAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCC
1 -AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7881792 AAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTC
1 -AGATG-AAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7881841 AGATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* * * * *
7881893 AAGATAAGAATTTTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTTTA
1 -AGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTC
* * *
7881943 AGAAGAAATTTTAAAGTTATTGAGCCTCTGCTGAGATGAGC-TTTTC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7881989 GAAGATGAGAATTTTAAAGTTGTGGAGCCTCTACTGAGAGGAGCTTTTTC
1 --AGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
7882039 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* *
7882091 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
1 -AGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7882140 AAAAAGAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCC
1 -AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * * *
7882188 AGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGAAGCTTTTCC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7882235 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTCC
1 -AGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7882284 AGATGAGATTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAACTTTTTTA
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTC
* * *
7882332 AGATGAGAATTTTAAAGTTG-TGAAGCCTATGTTGAGAGGAGCTTTTCC
1 AGATGA-AATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7882380 AAATGAGATTTTTAAAATTGTTGAGCCTCTGTTGAGAGGAGCTTTTTC
1 AGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7882428 AAATGATATTTTAAAGTTGTTGAGCCTCAGCTGAGAGGAGCCTTTTC
1 AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
7882475 A
1 A
7882476 AAAAAAAATA
Statistics
Matches: 671, Mismatches: 81, Indels: 66
0.82 0.10 0.08
Matches are distributed among these distances:
46 4 0.01
47 178 0.27
48 174 0.26
49 173 0.26
50 17 0.03
51 7 0.01
52 35 0.05
53 39 0.06
54 44 0.07
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (47 bp):
AGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:7881877 original size:96 final size:96
Alignment explanation
Indices: 7881643--7882474 Score: 910
Period size: 96 Copynumber: 8.5 Consensus size: 96
7881633 AATTTGAAAA
* * * *
7881643 AGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTC-AGATG-ATATTTTAA
1 AGATGAG-A-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAA
*
7881706 AGTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTC
64 AGTTGTGGAGCCTCTGTT--GAG-AG-A-AGCTTTTTC
* * *
7881744 AAGAAGAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAA
1 -AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAA
*
7881809 GTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTC
65 GTTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
* *
7881841 AGATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGAT-AAGAATT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTCCAAGATGAA-AATT
* * *
7881905 TTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTTTA
60 TTAAAGTTGTGGAGCCTCTGTTGAGAGAAGC-TTTTTC
* * * * * *
7881943 AGAAGAAATTTTAAAGTTATTGAGCCTCTGCTGAGATGAGCTTTTCGAAGATGAGAATTTTAAAG
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAG
** *
7882008 TTGTGGAGCCTCTACTGAGAGGAGCTTTTTC
66 TTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
* *
7882039 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATGAGAATTT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTCCAAGATGAAAATTT
*
7882104 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
61 TAAAGTTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
* * * * *
7882140 AAAAAGAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCC-AGATG-AGATTTTAAA
1 -AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAA
*
7882203 GTTGTGGAGCCTCTGTTGAGAGAAGCTTTTCC
65 GTTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
* *
7882235 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTCC-AGATG-AGATTTTAA
1 -AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAA
* * * *
7882298 AGTTGTTGAGCTTCTGCTGAGAGGAA-CTTTTTTA
64 AGTTGTGGAGCCTCTGTTGAGA-GAAGC-TTTTTC
* * * *
7882332 AGATGAGAATTTTAAAGTTG-TGAAGCCTATGTTGAGAGGAGCTTTTCCAA-ATGAGATTTTTAA
1 AGATGAG-ATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAA
* * *
7882395 AATTGTTGAGCCTCTGTTGAGAGGAGCTTTTTC
64 AGTTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
* * *
7882428 AAATGATATTTTAAAGTTGTTGAGCCTCAGCTGAGAGGAGCCTTTTC
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTC
7882475 AAAAAAAAAT
Statistics
Matches: 634, Mismatches: 71, Indels: 56
0.83 0.09 0.07
Matches are distributed among these distances:
95 71 0.11
96 205 0.32
97 97 0.15
98 8 0.01
99 8 0.01
100 46 0.07
101 107 0.17
102 92 0.15
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (96 bp):
AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAG
TTGTGGAGCCTCTGTTGAGAGAAGCTTTTTC
Found at i:7881952 original size:149 final size:148
Alignment explanation
Indices: 7881642--7882464 Score: 1005
Period size: 149 Copynumber: 5.6 Consensus size: 148
7881632 AAATTTGAAA
* *
7881642 AAGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTCAGATGATATTTTAAA
1 AAGATGAGAA-TTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAA
* * *
7881707 GTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTCAAGAAGA-AATTTTAAAGTTGTTGAGCC
65 GTTGTTGAGCCTCTGCTGAGAG-AG-AGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCC
**
7881771 TCTACTGAGAGGAGCTTTTCC
128 TCTGTTGAGAGGAGCTTTTCC
* * *
7881792 AAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTCAGATGAGATTTTAAAG
1 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
* *
7881857 TTATTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATAAGAATTTTAAAGTTGTGGAGCCT
66 TTGTTGAGCCTCTGCTGAGAG-AGA-GAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCT
* **
7881922 TTGTTGAGAGGAGCTTTTTT
129 CTGTTGAGAGGAGCTTTTCC
* * * *
7881942 AAGAAGA-AATTTTAAAGTTATTGAGCCTCTGCTGAGATGAGC-TTTTCGAAGATGAGAATTTTA
1 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTC--AGATGAG-ATTTTA
* * *
7882005 AAGTTGTGGAGCCTCTACT--GAGAG-GAGCTTTTTC-AGATGAG-ATTTTAAAGTTGTTGAGCC
63 AAGTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCC
* *
7882065 TCTGCTGAGAGCAGATGAGCTTTTTC
128 TCTG-T-TGAG-AG--GAGCTTTTCC
* * * * *
7882091 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAAAAGAAATTTTAAA
1 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAGATTTTAAA
* *
7882156 GTTGTTGAGCCTCTG-T-TGAGAG-GAGC-TTTTCCAGATGAG-ATTTTAAAGTTGTGGAGCCTC
65 GTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTC
*
7882216 TGTTGAGAGAAGCTTTTCC
130 TGTTGAGAGGAGCTTTTCC
*
7882235 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTCCAGATGAGATTTTAAAG
1 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
* * * *
7882300 TTGTTGAGCTTCTGCTGAGAG-GA-A-CTTTTTTAAGATGAGAATTTTAAAGTTGTGAAGCCTAT
66 TTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCT
7882362 GTTGAGAGGAGCTTTTCC
131 GTTGAGAGGAGCTTTTCC
* * * * * *
7882380 AA-ATGAGATTTTTAAAATTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAAATGATATTTTAAAG
1 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
*
7882444 TTGTTGAGCCTCAGCTGAGAG
66 TTGTTGAGCCTCTGCTGAGAG
7882465 GAGCCTTTTC
Statistics
Matches: 590, Mismatches: 64, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
143 27 0.05
144 163 0.28
145 49 0.08
146 15 0.03
147 5 0.01
148 15 0.03
149 196 0.33
150 93 0.16
151 27 0.05
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (148 bp):
AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
TTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCT
GTTGAGAGGAGCTTTTCC
Found at i:7881986 original size:198 final size:196
Alignment explanation
Indices: 7881643--7882464 Score: 1069
Period size: 198 Copynumber: 4.2 Consensus size: 196
7881633 AATTTGAAAA
* *
7881643 AGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCT--GAGA-AGAGCTTTTTC-AGATGA-TATTT
1 AGATGAG-A-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTT
*
7881703 TAAAGTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTCAAGAAGAAATTTTAAAGTTGTTGA
64 TAAAGTTGTGGAGCCTCTGTT--GAG-AG--GAGCTTTTTCAAGAAGAAATTTTAAAGTTGTTGA
*
7881768 GCCTCTACTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAA
124 GCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAA
7881833 GCTTTTTC
189 GCTTTTTC
* *
7881841 AGATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATAAGAATTT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAG-AGA-GAGCTTTTTCAAGATGAGAATTT
* * *
7881906 TAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTTTAAGAAGAAATTTTAAAGTTATTGAGCCTC
64 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAATTTTAAAGTTGTTGAGCCTC
* * * * *
7881971 TGCTGAGATGAGCTTTTCGAAGATGAGAATTTTAAAGTTGTGGAGCCTCTACTGAGAGGAGCTTT
129 TGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTT
7882036 TTC
194 TTC
7882039 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATGAGAATTT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAG-AGA-GAGCTTTTTCAAGATGAGAATTT
*
7882104 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAAAAGAAATTTTAAAGTTGTTGAGCCTC
64 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAATTTTAAAGTTGTTGAGCCTC
* * *
7882169 TGTTGAGAGGAGCTTTTCC-AGATG-AGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGAAGCTTT
129 TGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTT
*
7882232 TCC
194 TTC
* *
7882235 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCT--GAGAG-GAGC-TTTTCCAGATGAG-ATTT
1 -AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTT
* * * * * *
7882295 TAAAGTTGTTGAGCTTCTGCTGAGAGGAACTTTTTTAAGATGAGAATTTTAAAGTTG-TGAAGCC
64 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAGA-AATTTTAAAGTTGTTG-AGCC
* * * * * * * *
7882359 TATGTTGAGAGGAGCTTTTCCAA-ATGAGATTTTTAAAATTGTTGAGCCTCTGTTGAGAGGAGCT
127 TCTGCTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCT
7882423 TTTTC
192 TTTTC
* * *
7882428 AAATGATATTTTAAAGTTGTTGAGCCTCAGCTGAGAG
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAG
7882465 GAGCCTTTTC
Statistics
Matches: 559, Mismatches: 50, Indels: 35
0.87 0.08 0.05
Matches are distributed among these distances:
191 65 0.12
192 57 0.10
193 43 0.08
195 2 0.00
196 61 0.11
197 13 0.02
198 273 0.49
199 1 0.00
200 3 0.01
201 13 0.02
202 5 0.01
203 23 0.04
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (196 bp):
AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTA
AAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAGAAATTTTAAAGTTGTTGAGCCTCTG
CTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTTTT
C
Found at i:7882662 original size:11 final size:11
Alignment explanation
Indices: 7882646--7882680 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7882636 AATATTTAAT
7882646 AAAACAAACAA
1 AAAACAAACAA
7882657 AAAACAAA-AA
1 AAAACAAACAA
7882667 ATAAACAAACAA
1 A-AAACAAACAA
7882679 AA
1 AA
7882681 GAAACAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.14
11 16 0.73
12 3 0.14
ACGTcount: A:0.83, C:0.14, G:0.00, T:0.03
Consensus pattern (11 bp):
AAAACAAACAA
Found at i:7882674 original size:22 final size:24
Alignment explanation
Indices: 7882647--7882690 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7882637 ATATTTAATA
7882647 AAACAAAC-AAA-AAACAAAAAAT
1 AAACAAACAAAAGAAACAAAAAAT
7882669 AAACAAACAAAAGAAACAAAAA
1 AAACAAACAAAAGAAACAAAAA
7882691 TAAGACAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.82, C:0.14, G:0.02, T:0.02
Consensus pattern (24 bp):
AAACAAACAAAAGAAACAAAAAAT
Found at i:7883382 original size:2 final size:2
Alignment explanation
Indices: 7883377--7883406 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7883367 CCCCCCAAAG
7883377 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7883407 TTTTGAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7885607 original size:22 final size:20
Alignment explanation
Indices: 7885561--7885600 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7885551 ACGATAGAGC
*
7885561 CTCTTCAAAAAATTAAATGT
1 CTCTTCAAAAAATCAAATGT
7885581 CTCTTCAAAAAATCAAATGT
1 CTCTTCAAAAAATCAAATGT
7885601 GATTCTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
CTCTTCAAAAAATCAAATGT
Found at i:7886081 original size:59 final size:61
Alignment explanation
Indices: 7885986--7886123 Score: 160
Period size: 59 Copynumber: 2.3 Consensus size: 61
7885976 TATGTTATGA
* *
7885986 ATTATTCAAGGCGTTTTCTAACCAAAAACACCTTGAATAATC-CATTGTCTTTTTTTA-A-G
1 ATTATTCAAGGTGTTTTCTAACCAAAAACACCTTGAATAATCTC-TTGTATTTTTTTATAGG
* *
7886045 ATTATTCAAGGTGTTTT-TGACCAAAAAC-CGCTTTGAATAATCTCTTTTATTTTTTTATTAGG
1 ATTATTCAAGGTGTTTTCTAACCAAAAACAC-C-TTGAATAATCTCTTGTATTTTTTTA-TAGG
*
7886107 ATTATTCAAAGTGTTTT
1 ATTATTCAAGGTGTTTT
7886124 GGCAGAAAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
57 1 0.01
58 11 0.16
59 37 0.54
60 1 0.01
61 1 0.01
62 17 0.25
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (61 bp):
ATTATTCAAGGTGTTTTCTAACCAAAAACACCTTGAATAATCTCTTGTATTTTTTTATAGG
Found at i:7886159 original size:60 final size:61
Alignment explanation
Indices: 7886035--7886159 Score: 141
Period size: 60 Copynumber: 2.1 Consensus size: 61
7886025 ATCCATTGTC
* * *
7886035 TTTTTTTAAGATTATTCAAGGTGTTTTTGACCAAAAACCGCTTTGAATAATCTCTTTTATT
1 TTTTTTTAAGATTATTCAAAGTGTTTTTGACCAAAAACCGCTTTGAATAATCTCTTCTAAT
* * *
7886096 TTTTTATTAGGATTATTCAAAGTG-TTTTG-GCAGAAAACAC-C-TTGAATAATTTCTTCTAAT
1 TTTTT-TTAAGATTATTCAAAGTGTTTTTGACCA-AAAAC-CGCTTTGAATAATCTCTTCTAAT
7886156 TTTT
1 TTTT
7886160 ATTGAGAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
60 22 0.40
61 16 0.29
62 17 0.31
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (61 bp):
TTTTTTTAAGATTATTCAAAGTGTTTTTGACCAAAAACCGCTTTGAATAATCTCTTCTAAT
Found at i:7886574 original size:2 final size:2
Alignment explanation
Indices: 7886569--7886601 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7886559 CCTCTCTCTC
7886569 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7886602 TCCCTTTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7892149 original size:16 final size:16
Alignment explanation
Indices: 7892130--7892182 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
7892120 AGGATAGGGC
7892130 ATAAAAAATAAAAAAA
1 ATAAAAAATAAAAAAA
7892146 ATAAAAAATAAAAAACA
1 ATAAAAAATAAAAAA-A
*
7892163 A-AAAAGA-AAAAAAA
1 ATAAAAAATAAAAAAA
*
7892177 ACAAAA
1 ATAAAA
7892183 GGGACATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
14 2 0.06
15 10 0.29
16 20 0.59
17 2 0.06
ACGTcount: A:0.87, C:0.04, G:0.02, T:0.08
Consensus pattern (16 bp):
ATAAAAAATAAAAAAA
Found at i:7892156 original size:23 final size:24
Alignment explanation
Indices: 7892130--7892182 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
7892120 AGGATAGGGC
* *
7892130 ATAAAAAATAAAAAA-AATAAAAA
1 ATAAAAAACAAAAAAGAAAAAAAA
7892153 ATAAAAAACAAAAAAGAAAAAAAA
1 ATAAAAAACAAAAAAGAAAAAAAA
*
7892177 ACAAAA
1 ATAAAA
7892183 GGGACATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.87, C:0.04, G:0.02, T:0.08
Consensus pattern (24 bp):
ATAAAAAACAAAAAAGAAAAAAAA
Found at i:7892182 original size:7 final size:7
Alignment explanation
Indices: 7892130--7892174 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
7892120 AGGATAGGGC
7892130 ATAAAAA
1 ATAAAAA
7892137 ATAAAAAAA
1 AT--AAAAA
7892146 ATAAAAA
1 ATAAAAA
7892153 ATAAAAA
1 ATAAAAA
*
7892160 ACAAAAA
1 ATAAAAA
*
7892167 AGAAAAA
1 ATAAAAA
7892174 A
1 A
7892175 AAACAAAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 27 0.79
9 7 0.21
ACGTcount: A:0.87, C:0.02, G:0.02, T:0.09
Consensus pattern (7 bp):
ATAAAAA
Found at i:7893948 original size:41 final size:41
Alignment explanation
Indices: 7893885--7893989 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
7893875 TTAAAGTTTT
* * *
7893885 AAAGTCTCTGTTTTAGAA-GAACC-GTTCTCGATCAAGATTTC
1 AAAGCCTCTG-TTTAGAAGGAACCAATT-TCAATCAAGATTTC
*
7893926 AAAGCCTCTGTTTAAAAGGAACCAATTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAGAAGGAACCAATTTCAATCAAGATTTC
*
7893967 AAAGCCTCTGTTTAGAGGGAACC
1 AAAGCCTCTGTTTAGAAGGAACC
7893990 TTCCTCAGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 6 0.11
41 48 0.86
42 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (41 bp):
AAAGCCTCTGTTTAGAAGGAACCAATTTCAATCAAGATTTC
Found at i:7894279 original size:121 final size:123
Alignment explanation
Indices: 7894047--7894395 Score: 542
Period size: 121 Copynumber: 2.8 Consensus size: 123
7894037 AAGCCATGTG
7894047 TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
* *
7894112 AGATTTTTAAGACCTCCGGGCATGATCTCTAAAAACCTCTACGCACGACTTTCAAG-A
66 AGATTTGTAAGACCTCCAGGCATGATCTCTAAAAACCTCTACGCACGACTTTCAAGTA
* * *
7894169 TTAAAAGATTTTCAAAT-TTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTTAAAGATTTTG
1 TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
* * * ** *
7894233 AGATTTGTAAGACCTCTAGGCATGATCTCTAAAAGCCTTTGTGCACGACTTTCAAGTT
66 AGATTTGTAAGACCTCCAGGCATGATCTCTAAAAACCTCTACGCACGACTTTCAAGTA
7894291 TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
*
7894356 AGATTCTGTAAGACCTCC-GAGCATGATTCTGTAAAAACCT
66 AGATT-TGTAAGACCTCCAG-GCATGA-TCTCTAAAAACCT
7894396 TCGGGGTATG
Statistics
Matches: 205, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
121 94 0.46
122 32 0.16
123 51 0.25
124 17 0.08
125 11 0.05
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (123 bp):
TTAAAAGATTTTTAAATCTTTAAAGTTTCATTGCCACTGATTATGAGGAGCATTCAAAGATTTTG
AGATTTGTAAGACCTCCAGGCATGATCTCTAAAAACCTCTACGCACGACTTTCAAGTA
Found at i:7894523 original size:22 final size:22
Alignment explanation
Indices: 7894498--7894573 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
7894488 GTCATTTTTG
7894498 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
*
7894520 TAAGACCTCCGGGCA--ATTCTG
1 TAAGACCTCCGGGCATGATT-TC
* *
7894541 TAAGACCTTCGGACATGATTTC
1 TAAGACCTCCGGGCATGATTTC
7894563 TAAGACCTCCG
1 TAAGACCTCCG
7894574 AACATAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
20 3 0.07
21 14 0.30
22 26 0.57
23 3 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:7894837 original size:22 final size:22
Alignment explanation
Indices: 7894809--7894868 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
7894799 TATTAATTGA
*
7894809 TAAGACCTCCAGGCATGATTTT
1 TAAGACCTCCAGGCATGATTTC
*
7894831 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCAGGCATGATTTC
*
7894853 TAAGACCTCTAGGCAT
1 TAAGACCTCCAGGCAT
7894869 AAATTTGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (22 bp):
TAAGACCTCCAGGCATGATTTC
Found at i:7894955 original size:22 final size:22
Alignment explanation
Indices: 7894929--7895162 Score: 144
Period size: 22 Copynumber: 10.6 Consensus size: 22
7894919 ATCCCAATCA
*
7894929 ATTTTGTAA-ACCTCCGGACATG
1 ATTTT-TAAGACCTTCGGACATG
* *
7894951 ATTTTTAAGACTTTCGG--ATA
1 ATTTTTAAGACCTTCGGACATG
* *
7894971 ATTCTGTAAGA-CTTCCGAGCATG
1 ATT-TTTAAGACCTTCGGA-CATG
* *
7894994 ATTATGTAAGACCTTCGGGCATG
1 ATT-TTTAAGACCTTCGGACATG
* *
7895017 ACTTTTAAAACCTTCGGACATG
1 ATTTTTAAGACCTTCGGACATG
*
7895039 ATTTTTAAGACCTTCGG--ATA
1 ATTTTTAAGACCTTCGGACATG
* *
7895059 ATTCTGTAAGACCTTCGGGCATG
1 ATT-TTTAAGACCTTCGGACATG
* *
7895082 ATTCTATAAGA-CTTCTGGGCATG
1 ATT-TTTAAGACCTTC-GGACATG
* * *
7895105 ATGTCTAAAACCTTC-GAGCATG
1 ATTTTTAAGACCTTCGGA-CATG
*
7895127 ATTCTGTAAGACCTTC-GAGCATG
1 ATT-TTTAAGACCTTCGGA-CATG
*
7895150 ATTTCTAAGACCT
1 ATTTTTAAGACCT
7895163 CTGGGCATAA
Statistics
Matches: 171, Mismatches: 28, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
20 14 0.08
21 23 0.13
22 66 0.39
23 63 0.37
24 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (22 bp):
ATTTTTAAGACCTTCGGACATG
Found at i:7895055 original size:88 final size:88
Alignment explanation
Indices: 7894936--7895143 Score: 280
Period size: 88 Copynumber: 2.4 Consensus size: 88
7894926 TCAATTTTGT
* * *
7894936 AAACCTCCGGACATGATTTTTAAGACTTTCGGATAATTCTGTAAGA-CTTCCGAGCATGATTATG
1 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTT-CGAGCATGATTATA
*
7895000 TAAGACCTTC-GGGCATGACT-TTTA
65 TAAGA-CTTCTGGGCATGA-TGTCTA
* *
7895024 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCGGGCATGATTCTAT
1 AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCGAGCATGATTATAT
7895089 AAGACTTCTGGGCATGATGTCTA
66 AAGACTTCTGGGCATGATGTCTA
*
7895112 AAACCTTC-GAGCATGATTCTGTAAGACCTTCG
1 AAACCTTCGGA-CATGATT-TTTAAGACCTTCG
7895144 AGCATGATTT
Statistics
Matches: 108, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
87 7 0.06
88 86 0.80
89 15 0.14
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (88 bp):
AAACCTTCGGACATGATTTTTAAGACCTTCGGATAATTCTGTAAGACCTTCGAGCATGATTATAT
AAGACTTCTGGGCATGATGTCTA
Found at i:7895120 original size:45 final size:44
Alignment explanation
Indices: 7894989--7895170 Score: 176
Period size: 45 Copynumber: 4.1 Consensus size: 44
7894979 AGACTTCCGA
* *
7894989 GCATGATTATGTAAGACCTTCGGGCATGACTTTTAAAACCTTCGG
1 GCATGATTCTGTAAGACCTTCGGGCATGA-TTCTAAAACCTTCGG
* * * *
7895034 ACATGATT-TTTAAGACCTTC-GG-ATAATTCTGTAAGACCTTCGG
1 GCATGATTCTGTAAGACCTTCGGGCATGATTC--TAAAACCTTCGG
* *
7895077 GCATGATTCTATAAGA-CTTCTGGGCATGATGTCTAAAACCTTCGA
1 GCATGATTCTGTAAGACCTTC-GGGCATGAT-TCTAAAACCTTCGG
* *
7895122 GCATGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACC-TCTGG
1 GCATGATTCTGTAAGACCTTCGGGCATGA-TTCTAAAACCTTC-GG
7895167 GCAT
1 GCAT
7895171 AAATTTGATT
Statistics
Matches: 113, Mismatches: 14, Indels: 20
0.77 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 24 0.21
44 19 0.17
45 54 0.48
46 9 0.08
47 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (44 bp):
GCATGATTCTGTAAGACCTTCGGGCATGATTCTAAAACCTTCGG
Found at i:7895170 original size:22 final size:23
Alignment explanation
Indices: 7894933--7895170 Score: 182
Period size: 23 Copynumber: 10.8 Consensus size: 23
7894923 CAATCAATTT
* *
7894933 TGTAA-ACCTCCGGACATGATT-
1 TGTAAGACCTTCGGGCATGATTC
* * *
7894954 TTTAAGACTTTC-GG-ATAATTC
1 TGTAAGACCTTCGGGCATGATTC
* *
7894975 TGTAAGA-CTTCCGAGCATGATTA
1 TGTAAGACCTT-CGGGCATGATTC
7894998 TGTAAGACCTTCGGGCATGACTT-
1 TGTAAGACCTTCGGGCATGA-TTC
* *
7895021 T-TAAAACCTTCGGACATGATT-
1 TGTAAGACCTTCGGGCATGATTC
* *
7895042 TTTAAGACCTTC-GG-ATAATTC
1 TGTAAGACCTTCGGGCATGATTC
7895063 TGTAAGACCTTCGGGCATGATTC
1 TGTAAGACCTTCGGGCATGATTC
*
7895086 TATAAGA-CTTCTGGGCATGATGTC
1 TGTAAGACCTTC-GGGCATGAT-TC
* *
7895110 --TAAAACCTTCGAGCATGATTC
1 TGTAAGACCTTCGGGCATGATTC
*
7895131 TGTAAGACCTTCGAGCATGATT-
1 TGTAAGACCTTCGGGCATGATTC
*
7895153 TCTAAGACC-TCTGGGCAT
1 TGTAAGACCTTC-GGGCAT
7895171 AAATTTGATT
Statistics
Matches: 176, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
20 12 0.07
21 31 0.18
22 61 0.35
23 65 0.37
24 7 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (23 bp):
TGTAAGACCTTCGGGCATGATTC
Found at i:7895266 original size:22 final size:22
Alignment explanation
Indices: 7895239--7895280 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
7895229 TTCAATCGAT
7895239 TTTGTAAGACCTCCGAGCATGA
1 TTTGTAAGACCTCCGAGCATGA
7895261 TTTGTAAGACCTCCGAGCAT
1 TTTGTAAGACCTCCGAGCAT
7895281 AAAATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (22 bp):
TTTGTAAGACCTCCGAGCATGA
Found at i:7895324 original size:110 final size:110
Alignment explanation
Indices: 7895126--7895328 Score: 307
Period size: 110 Copynumber: 1.8 Consensus size: 110
7895116 CTTCGAGCAT
* * * *
7895126 GATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTCTGGGCATAAATTTGATTCGCGATGTTA
1 GATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAAATTGATTCGCGATGTTA
**
7895191 TCCCGATCAATTTTTTATCTTTTGACTTGTGGTGTTATTTCAATC
66 TCCCGATCAATTCATTATCTTTTGACTTGTGGTGTTATTTCAATC
* *
7895236 GATTTTGTAAGACCTCCGAGCATGATTTGTAAGACCTCCGAGCATAAAATTGATTCGCGATGTTA
1 GATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAAATTGATTCGCGATGTTA
* * *
7895301 TCTCGATCGATTCATTATTTTTTGACTT
66 TCCCGATCAATTCATTATCTTTTGACTT
7895329 ACGGCGTCAA
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
110 82 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (110 bp):
GATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAAATTGATTCGCGATGTTA
TCCCGATCAATTCATTATCTTTTGACTTGTGGTGTTATTTCAATC
Found at i:7895527 original size:49 final size:48
Alignment explanation
Indices: 7895347--7896181 Score: 943
Period size: 49 Copynumber: 17.0 Consensus size: 48
7895337 AAATTTGAAA
* *
7895347 AAGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTC
1 AAGATGA-AA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7895397 -AGATGATATTTTAAAGTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* * *
7895449 AAGAAGAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7895497 AAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTC
1 AAGATG-AAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
7895546 -AGATGAGATTTTAAAGTT-TTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* * * * *
7895597 AAGATAAGAATTTTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTTT
1 AAGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7895646 AAGAAGAAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGC-TTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
7895693 GAAGATGAGAATTTTAAAGTTGTGGAGCCTCTACTGAGAGGAGCTTTTTC
1 -AAGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
7895743 -AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGCTTTTTC
* *
7895795 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
1 AAGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
7895844 AAAAAGAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGC-TTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * * * *
7895891 CAGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGAAGCTTTTCC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
*
7895939 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGC-TTTTC
1 AAGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * * *
7895987 CAGATGAGATTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAACTTTTTT
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
7896035 AAGATGAGAATTTTAAAGTTG-TGAAGCCTATGTTGAGAGGAGCTTTTCC
1 AAGATGA-AATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTTTC
* * *
7896084 AA-ATGAGATTTTTAAAATTGTTGAGCCTTCTGTTGAGAGGAGCTTTTTC
1 AAGATGA-AATTTTAAAGTTGTTGAGCC-TCTGCTGAGAGGAGCTTTTTC
* * *
7896133 AA-ATGATATTTTAAAGTTGTTGAGCCTCAGCTGAGAGGAGCCTTTTC
1 AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
7896180 AA
1 AA
7896182 AAAAAAATAA
Statistics
Matches: 673, Mismatches: 80, Indels: 67
0.82 0.10 0.08
Matches are distributed among these distances:
46 12 0.02
47 153 0.23
48 169 0.25
49 204 0.30
50 10 0.01
51 16 0.02
52 31 0.05
53 45 0.07
54 33 0.05
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (48 bp):
AAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:7895634 original size:149 final size:148
Alignment explanation
Indices: 7895347--7896169 Score: 980
Period size: 149 Copynumber: 5.6 Consensus size: 148
7895337 AAATTTGAAA
* * *
7895347 AAGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTCAGATGATATTTTAAA
1 AAGATGA-AAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAA
* * *
7895412 GTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTCAAGAAGA-AATTTTAAAGTTGTTGAGCC
65 GTTGTTGAGCCTCTGCTGAGAG-AG-AGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCC
**
7895476 TCTACTGAGAGGAGCTTTTCC
128 TCTGTTGAGAGGAGCTTTTCC
* *
7895497 AAGATGAAAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTCAGATGAGATTTTAAAG
1 AAGATGAAAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
*
7895562 TT-TTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATAAGAATTTTAAAGTTGTGGAGCCT
66 TTGTTGAGCCTCTGCTGAGAG-AGA-GAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCT
* **
7895626 TTGTTGAGAGGAGCTTTTTT
129 CTGTTGAGAGGAGCTTTTCC
* * *
7895646 AAGAAG-AAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGC-TTTTCGAAGATGAGAATTTTA
1 AAGATGAAAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTC--AGATGAG-ATTTTA
* * *
7895709 AAGTTGTGGAGCCTCTACT--GAGAG-GAGCTTTTTC-AGATGAG-ATTTTAAAGTTGTTGAGCC
63 AAGTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCC
* *
7895769 TCTGCTGAGAGCAGATGAGCTTTTTC
128 TCTG-T-TGAG-AG--GAGCTTTTCC
* * * * * *
7895795 AAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAAAAGAAATTTTAAA
1 AAGATGAAAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAGATTTTAAA
* *
7895860 GTTGTTGAGCCTCTG-T-TGAGAG-GAGC-TTTTCCAGATGAG-ATTTTAAAGTTGTGGAGCCTC
65 GTTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTC
*
7895920 TGTTGAGAGAAGCTTTTCC
130 TGTTGAGAGGAGCTTTTCC
* *
7895939 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTCCAGATGAGATTTTAAAG
1 AAGATGAAAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
* * * *
7896004 TTGTTGAGCTTCTGCTGAGAG-GA-A-CTTTTTTAAGATGAGAATTTTAAAGTTGTGAAGCCTAT
66 TTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCT
7896066 GTTGAGAGGAGCTTTTCC
131 GTTGAGAGGAGCTTTTCC
* * * * * * *
7896084 AA-ATGAGATTTTTAAAATTGTTGAGCCTTCTGTTGAGAGGAGCTTTTTCAAATGATATTTTAAA
1 AAGATGAAAATTTTAAAGTTGTAGAGCC-TCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAA
*
7896148 GTTGTTGAGCCTCAGCTGAGAG
65 GTTGTTGAGCCTCTGCTGAGAG
7896170 GAGCCTTTTC
Statistics
Matches: 591, Mismatches: 61, Indels: 47
0.85 0.09 0.07
Matches are distributed among these distances:
143 27 0.05
144 111 0.19
145 101 0.17
146 15 0.03
147 11 0.02
148 77 0.13
149 178 0.30
150 55 0.09
151 16 0.03
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (148 bp):
AAGATGAAAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
TTGTTGAGCCTCTGCTGAGAGAGAGAGCTTTTTCAAGATGAGAATTTTAAAGTTGTGGAGCCTCT
GTTGAGAGGAGCTTTTCC
Found at i:7895777 original size:96 final size:95
Alignment explanation
Indices: 7895348--7896181 Score: 962
Period size: 96 Copynumber: 8.5 Consensus size: 95
7895338 AATTTGAAAA
* * *
7895348 AGATGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAAGAGCTTTTTC-AGATGA-TATTTTAA
1 AGATGAG-A-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTCAAGATGAGAATTTTAA
*
7895411 AGTTGTTGAGCCTCTGTTGAGAGCAGAAGAGCTTTTTC
63 AGTTGTGGAGCCTCTGTT--GAG-AG--GAGCTTTTTC
* * * *
7895449 AAGAAGAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATGAAAATTTTAAA
1 -AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTT-CAAGATGAGAATTTTAAA
* *
7895514 GTTGTGGAGCCTCTGCTGAGAGAAGCTTTTTC
64 GTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
*
7895546 AGATGAGATTTTAAAGTT-TTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATAAGAATTT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGC-TTTTCAAGATGAGAATTT
* *
7895610 TAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTTTA
60 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGC-TTTTTC
* * *
7895647 AGAAGAAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTTTTCGAAGATGAGAATTTTAAAG
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTC-AAGATGAGAATTTTAAAG
**
7895712 TTGTGGAGCCTCTACTGAGAGGAGCTTTTTC
65 TTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
7895743 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGCAGATGAGCTTTTTCAAGATGAGAATTT
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCT--GAG-AG--GAGC-TTTTCAAGATGAGAATTT
7895808 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
60 TAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
* * * * *
7895844 AAAAAGAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAGATGAG-ATTTTAAAG
1 -AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAAG
* *
7895908 TTGTGGAGCCTCTGTTGAGAGAAGCTTTTCC
65 TTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
* *
7895939 AAGATGAGAATTTTAAAGTTGTAGAGCCTCTGCTGAGAGGAGCTTTTCCAGATGAG-ATTTTAAA
1 -AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAA
* * * * *
7896003 GTTGTTGAGCTTCTGCTGAGAGGAACTTTTTTA
64 GTTGTGGAGCCTCTGTTGAGAGGAGC-TTTTTC
* * *
7896036 AGATGAGAATTTTAAAGTTG-TGAAGCCTATGTTGAGAGGAGCTTTTCCAA-ATGAGATTTTTAA
1 AGATGAG-ATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCTTTT-CAAGATGAGAATTTTAA
* *
7896099 AATTGTTGAGCCTTCTGTTGAGAGGAGCTTTTTC
63 AGTTGTGGAGCC-TCTGTTGAGAGGAGCTTTTTC
* * *
7896133 AAATGATATTTTAAAGTTGTTGAGCCTCAGCTGAGAGGAGCCTTTTCAA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCAA
7896182 AAAAAAATAA
Statistics
Matches: 641, Mismatches: 64, Indels: 60
0.84 0.08 0.08
Matches are distributed among these distances:
95 56 0.09
96 217 0.34
97 98 0.15
98 18 0.03
99 12 0.02
100 83 0.13
101 83 0.13
102 74 0.12
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (95 bp):
AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCAAGATGAGAATTTTAAAGT
TGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
Found at i:7896366 original size:11 final size:11
Alignment explanation
Indices: 7896350--7896384 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7896340 AATATTTAAT
7896350 AAAACAAACAA
1 AAAACAAACAA
7896361 AAAACAAA-AA
1 AAAACAAACAA
7896371 ATAAACAAACAA
1 A-AAACAAACAA
7896383 AA
1 AA
7896385 GAAACAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.14
11 16 0.73
12 3 0.14
ACGTcount: A:0.83, C:0.14, G:0.00, T:0.03
Consensus pattern (11 bp):
AAAACAAACAA
Found at i:7896378 original size:22 final size:24
Alignment explanation
Indices: 7896351--7896394 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7896341 ATATTTAATA
7896351 AAACAAAC-AAA-AAACAAAAAAT
1 AAACAAACAAAAGAAACAAAAAAT
7896373 AAACAAACAAAAGAAACAAAAA
1 AAACAAACAAAAGAAACAAAAA
7896395 TAAGACAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.82, C:0.14, G:0.02, T:0.02
Consensus pattern (24 bp):
AAACAAACAAAAGAAACAAAAAAT
Found at i:7897087 original size:2 final size:2
Alignment explanation
Indices: 7897082--7897107 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7897072 CCCCCCAAAG
7897082 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
7897108 TTTTGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7899310 original size:22 final size:20
Alignment explanation
Indices: 7899264--7899303 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7899254 ACGATAGAGC
*
7899264 CTCTTCAAAAAATTAAATGT
1 CTCTTCAAAAAATCAAATGT
7899284 CTCTTCAAAAAATCAAATGT
1 CTCTTCAAAAAATCAAATGT
7899304 GATTCTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
CTCTTCAAAAAATCAAATGT
Found at i:7899804 original size:59 final size:61
Alignment explanation
Indices: 7899692--7899873 Score: 178
Period size: 62 Copynumber: 3.0 Consensus size: 61
7899682 ATGTTATGAC
* * * *
7899692 ATTATTCAAGGCGTTTTCTAACCAAAAACACCTTGAATAATC-CATTGT-CTTTTT-TTA-AG
1 ATTATTCAAGGTGTTTT-TGACCAAAAACACCTTGAATAATCTC-TTCTAATTTTTATTAGAG
* * * * *
7899751 ATTATTCAAGGTGTTTTTGACCAAAAACGCTTTGAATAATCTCTTTTATTTTTTTATTAGGG
1 ATTATTCAAGGTGTTTTTGACCAAAAACACCTTGAATAATCTCTTCTA-ATTTTTATTAGAG
* * *
7899813 ATTATTCAAAGTGTTTTTG-GCAGAAAACACCTTGAATAATTTCTTCTAATTTTTATT-GAG
1 ATTATTCAAGGTGTTTTTGACCA-AAAACACCTTGAATAATCTCTTCTAATTTTTATTAGAG
7899873 A
1 A
7899874 ATTGCAAACA
Statistics
Matches: 102, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
58 24 0.24
59 17 0.17
60 8 0.08
61 13 0.13
62 40 0.39
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (61 bp):
ATTATTCAAGGTGTTTTTGACCAAAAACACCTTGAATAATCTCTTCTAATTTTTATTAGAG
Found at i:7900258 original size:2 final size:2
Alignment explanation
Indices: 7900251--7900279 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7900241 ACTAAATATT
7900251 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7900280 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7900284 original size:2 final size:2
Alignment explanation
Indices: 7900279--7900313 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7900269 TCTCTCTCTC
7900279 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7900314 TCCCTTTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7905175 original size:1 final size:1
Alignment explanation
Indices: 7905169--7905195 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
7905159 AGAGCCTTAG
7905169 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
7905196 GGCAACACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7909772 original size:20 final size:20
Alignment explanation
Indices: 7909744--7909786 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
7909734 ATATAAAAAA
*
7909744 TTATTTTTTAATTAAT-TAT
1 TTATTTTTTTATTAATATAT
*
7909763 TTATTTTTTTATTTATATAT
1 TTATTTTTTTATTAATATAT
7909783 TTAT
1 TTAT
7909787 ATAATAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
TTATTTTTTTATTAATATAT
Found at i:7909868 original size:26 final size:26
Alignment explanation
Indices: 7909839--7909893 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
7909829 ATATTTTAAA
*
7909839 AAATAATATTTTAT-TAAT-TTCAAATC
1 AAAT-ATAATTTATATAATATT-AAATC
7909865 AAATATAATTTATATAATATTAAATC
1 AAATATAATTTATATAATATTAAATC
7909891 AAA
1 AAA
7909894 ATCAGATTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
26 16 0.62
27 2 0.08
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (26 bp):
AAATATAATTTATATAATATTAAATC
Found at i:7911310 original size:16 final size:14
Alignment explanation
Indices: 7911274--7911303 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7911264 TTCATTCAAT
7911274 ATAAATTTTTTATA
1 ATAAATTTTTTATA
*
7911288 ATAAATTTTTTTTA
1 ATAAATTTTTTATA
7911302 AT
1 AT
7911304 TATAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATAAATTTTTTATA
Found at i:7912261 original size:18 final size:18
Alignment explanation
Indices: 7912240--7912290 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
7912230 ATATCTTTAA
7912240 AAATTATATTAATAATTT
1 AAATTATATTAATAATTT
7912258 AAATTATATTAATAATTT
1 AAATTATATTAATAATTT
*
7912276 AAATTATATAAATAA
1 AAATTATATTAATAA
7912291 AAATTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATTATATTAATAATTT
Found at i:7912264 original size:33 final size:34
Alignment explanation
Indices: 7912201--7912266 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
7912191 TTATTTTTAA
* *
7912201 TTTATAAAATTAAATTTATATATTTTATTATATC
1 TTTATAAAATTAAATTAATATATTTAATTATATC
*
7912235 TTTA-AAAATTATATTAATA-ATTTAAATTATAT
1 TTTATAAAATTAAATTAATATATTT-AATTATAT
7912267 TAATAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 4 0.14
33 20 0.71
34 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (34 bp):
TTTATAAAATTAAATTAATATATTTAATTATATC
Found at i:7914122 original size:3 final size:3
Alignment explanation
Indices: 7914114--7914139 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7914104 TGTTTTCAAT
7914114 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7914140 TTTGCTGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7922351 original size:3 final size:3
Alignment explanation
Indices: 7922343--7922378 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
7922333 AATTCGAAAT
*
7922343 TAA TAA TAA TAA TAA TAA TAA GAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7922379 AAGGGTGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:7924335 original size:16 final size:16
Alignment explanation
Indices: 7924301--7924343 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7924291 GTAAGACTAG
* * *
7924301 AATAAATAAAATTATA
1 AATAAATAGATTTAAA
7924317 AATAAATAGATTTAAA
1 AATAAATAGATTTAAA
*
7924333 AATAATTAGAT
1 AATAAATAGAT
7924344 GTAGTCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (16 bp):
AATAAATAGATTTAAA
Found at i:7937934 original size:17 final size:18
Alignment explanation
Indices: 7937891--7937935 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
7937881 ATTAACCAAC
7937891 AATTAAAATTTAATTCAAA
1 AATTAAAA-TTAATTCAAA
*
7937910 AA-TCAAATTAATT-AAA
1 AATTAAAATTAATTCAAA
7937926 AATTAAAATT
1 AATTAAAATT
7937936 TTTTAAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 5 0.22
17 12 0.52
18 4 0.17
19 2 0.09
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTAAAATTAATTCAAA
Found at i:7938902 original size:13 final size:14
Alignment explanation
Indices: 7938884--7938924 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7938874 AAATTTCGTT
7938884 AATATTT-TCTAAA
1 AATATTTATCTAAA
*
7938897 AATATTTATTTAAA
1 AATATTTATCTAAA
*
7938911 AATATATATC-AAA
1 AATATTTATCTAAA
7938924 A
1 A
7938925 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATTTATCTAAA
Found at i:7939007 original size:19 final size:19
Alignment explanation
Indices: 7938985--7939029 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
7938975 TTTTTATATA
7938985 TTAATTTTGATTT-TAAATT
1 TTAATTTT-ATTTATAAATT
*
7939004 TTAATTTTATTTAATCAATT
1 TTAATTTTATTT-ATAAATT
7939024 TTAATT
1 TTAATT
7939030 GAAAATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 8 0.35
20 11 0.48
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTAATTTTATTTATAAATT
Found at i:7942093 original size:12 final size:12
Alignment explanation
Indices: 7942076--7942104 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7942066 CTGGGCGTTT
7942076 CTTGTCCTTATC
1 CTTGTCCTTATC
7942088 CTTGTCCTTATC
1 CTTGTCCTTATC
7942100 CTTGT
1 CTTGT
7942105 TAGCTGCGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.31, G:0.10, T:0.52
Consensus pattern (12 bp):
CTTGTCCTTATC
Found at i:7947607 original size:23 final size:22
Alignment explanation
Indices: 7947581--7947628 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
7947571 TCGAATTTTC
*
7947581 TTTTTATTCTTAATCTTTAAAAA
1 TTTTTATT-TGAATCTTTAAAAA
* *
7947604 TTTTTATTTGGATCTTTAATAA
1 TTTTTATTTGAATCTTTAAAAA
7947626 TTT
1 TTT
7947629 AAAATTATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (22 bp):
TTTTTATTTGAATCTTTAAAAA
Found at i:7948537 original size:22 final size:21
Alignment explanation
Indices: 7948489--7948547 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
7948479 ATTTTGAATC
*
7948489 TATTTT-TATAAAA-AAAATT
1 TATTTTATATAAAATGAAATT
7948508 TATATTTATATAAAATGAAATAT
1 TAT-TTTATATAAAATGAAAT-T
* *
7948531 TATTTTAAATAATATGA
1 TATTTTATATAAAATGA
7948548 TTTCTTGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 7 0.21
22 16 0.48
23 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
TATTTTATATAAAATGAAATT
Found at i:7948625 original size:16 final size:18
Alignment explanation
Indices: 7948604--7948636 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
7948594 TTTATTTTTG
7948604 ATTTTT-ATAAA-AATAA
1 ATTTTTAATAAAGAATAA
7948620 ATTTTTAATAAAGAATA
1 ATTTTTAATAAAGAATA
7948637 TATTCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTTTTAATAAAGAATAA
Found at i:7948771 original size:29 final size:29
Alignment explanation
Indices: 7948716--7948772 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
7948706 ATTCTTACTC
* * *
7948716 AATATTTTAAAATGAAATAGAATTTTTTT
1 AATATTTTAAAACGAAATAAAAATTTTTT
* *
7948745 AATATTTTAAACCGATATAAAAATTTTT
1 AATATTTTAAAACGAAATAAAAATTTTT
7948773 ACATAATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (29 bp):
AATATTTTAAAACGAAATAAAAATTTTTT
Found at i:7950266 original size:18 final size:19
Alignment explanation
Indices: 7950243--7950289 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
7950233 TATATGAATT
*
7950243 AATTAAATTTA-AA-TTTA
1 AATTAAATTTAGAACTTAA
*
7950260 AATTTAATTTAGAACTTAA
1 AATTAAATTTAGAACTTAA
*
7950279 AATTAACTTTA
1 AATTAAATTTA
7950290 TCACGAGACA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.42
18 2 0.08
19 12 0.50
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
AATTAAATTTAGAACTTAA
Found at i:7950733 original size:17 final size:16
Alignment explanation
Indices: 7950665--7950734 Score: 61
Period size: 17 Copynumber: 4.1 Consensus size: 16
7950655 ATAATCAATT
*
7950665 AATTAT-AAATAAAAA
1 AATTATAAAATATAAA
7950680 AATATAATCAAAATATATAA
1 AAT-T-AT-AAAATATA-AA
7950700 AATTATAAAATATTAAA
1 AATTATAAAATA-TAAA
*
7950717 AATTTATTAAATATAAA
1 AA-TTATAAAATATAAA
7950734 A
1 A
7950735 TAAATCACTT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
15 3 0.07
16 1 0.02
17 17 0.37
18 13 0.28
19 7 0.15
20 5 0.11
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (16 bp):
AATTATAAAATATAAA
Found at i:7952083 original size:24 final size:24
Alignment explanation
Indices: 7952038--7952093 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
7952028 AATCTAAAAT
*
7952038 TTTAATAAAAAATATATTTTAT-A
1 TTTAATAAAAAATATATATTATAA
7952061 TTTAATAAATAAATATGA-ATTATAA
1 TTTAATAAA-AAATAT-ATATTATAA
*
7952086 TATAATAA
1 TTTAATAA
7952094 TTTTAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 9 0.32
24 10 0.36
25 9 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TTTAATAAAAAATATATATTATAA
Found at i:7952522 original size:20 final size:21
Alignment explanation
Indices: 7952497--7952535 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7952487 GTATTCAATA
*
7952497 AAATTTAA-TTATTTTATTTT
1 AAATTTAAGATATTTTATTTT
7952517 AAATTTAAGATATTTTATT
1 AAATTTAAGATATTTTATT
7952536 AATTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
AAATTTAAGATATTTTATTTT
Found at i:7953758 original size:27 final size:26
Alignment explanation
Indices: 7953701--7953758 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
7953691 AGAATATATC
*
7953701 ATAAATTTTAATAAAAATATTAAATTT
1 ATAAATTTTAATAAAAATATT-AATTA
*
7953728 ATAAATTATTTATAAAAATAATT-ATTA
1 ATAAATT-TTAATAAAAAT-ATTAATTA
7953755 ATAA
1 ATAA
7953759 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 14 0.52
28 10 0.37
29 3 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATAAATTTTAATAAAAATATTAATTA
Found at i:7953866 original size:7 final size:7
Alignment explanation
Indices: 7953856--7953880 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7953846 CAAAGATCAT
7953856 ATTTAAA
1 ATTTAAA
7953863 ATTTAAA
1 ATTTAAA
7953870 ATTTAAA
1 ATTTAAA
7953877 ATTT
1 ATTT
7953881 CATGAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAA
Found at i:7954489 original size:19 final size:19
Alignment explanation
Indices: 7954455--7954494 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7954445 TTAATAATTT
* * *
7954455 ATTAAATTTAATAAATTAA
1 ATTAAATTAAAAAAATAAA
7954474 ATTAAATTAAAAAAATAAA
1 ATTAAATTAAAAAAATAAA
7954493 AT
1 AT
7954495 CCTTTACAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAAATTAAAAAAATAAA
Found at i:7954670 original size:34 final size:33
Alignment explanation
Indices: 7954598--7954671 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 33
7954588 AACTTTTTAT
* **
7954598 ATTTTTTTAATTTAATAATAAATTTTAATTTTA
1 ATTTTTTTAATTTAATAATAAATTTAAAAGTTA
*
7954631 ATTTTTTAAAATTTAATAATAAA-TTAAAAGTTA
1 ATTTTTT-TAATTTAATAATAAATTTAAAAGTTA
7954664 ATTTTTTT
1 ATTTTTTT
7954672 GTATTTTGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
33 21 0.60
34 14 0.40
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
ATTTTTTTAATTTAATAATAAATTTAAAAGTTA
Found at i:7955902 original size:132 final size:134
Alignment explanation
Indices: 7955660--7955903 Score: 303
Period size: 132 Copynumber: 1.8 Consensus size: 134
7955650 ACTAATTTAA
* * *
7955660 TATTATGTTAAATTTTAATACATATAATTTAATAAGAGTAGTATAGTAATTTTTAAATAAAATTT
1 TATTATGTTAAAATTTAATACATATAATTAAATAAGAGTAGTATAGTAATTTTTAAATAAAATAT
* * * * *
7955725 TAGATGTAAAATTTTTAGGAAACAATGACAAGGATATATTAATAATTTAATATATGATTAATTTT
66 TACATATAAAATTCTTAGGAAACAATCACAAGGACATATTAATAATTTAATATATGATTAATTTT
7955790 GTAT
131 GTAT
* * *
7955794 TATTATGTTAAAATTTAATACATA-AATTAAATGAGA-TATTGTAGTAATTTTTAAATAAAATAT
1 TATTATGTTAAAATTTAATACATATAATTAAATAAGAGTAGTATAGTAATTTTTAAATAAAATAT
* * * * * * * *
7955857 TACATATCAACTTCTTATGAAATAATCATAAGTACATTTTTATAATT
66 TACATATAAAATTCTTAGGAAACAATCACAAGGACATATTAATAATT
7955904 ATTATAAGGA
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
132 58 0.64
133 10 0.11
134 23 0.25
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (134 bp):
TATTATGTTAAAATTTAATACATATAATTAAATAAGAGTAGTATAGTAATTTTTAAATAAAATAT
TACATATAAAATTCTTAGGAAACAATCACAAGGACATATTAATAATTTAATATATGATTAATTTT
GTAT
Done.