Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 50 of 64
Found at i:7956085 original size:62 final size:61
Alignment explanation
Indices: 7955948--7956110 Score: 151
Period size: 62 Copynumber: 2.7 Consensus size: 61
7955938 TTGGTAAGAT
* *
7955948 AGTATTTTTGTAATTAT-GATA-AAAAAATATTATAATAATTTTGATCAATCATGGTAGTAAG
1 AGTAATTTTGTAATTATAG-TACAAAAGATATTATAATAATTTTGATCAATCATGGTAG-AAG
* * * *
7956009 AAT-ATTTCTATAATTATAGTACAAAAGATATTATAATAATTTT-AGCTAATTATAGGATA-AAG
1 AGTAATTT-TGTAATTATAGTACAAAAGATATTATAATAATTTTGATC-AATCAT-GG-TAGAAG
*
7956071 AGTAATTTTGTAATTATA--ACATAAAGGTATTATAATAATT
1 AGTAATTTTGTAATTATAGTACA-AAAGATATTATAATAATT
7956111 CATCGTTTAT
Statistics
Matches: 85, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
60 6 0.07
61 31 0.36
62 40 0.47
63 6 0.07
64 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (61 bp):
AGTAATTTTGTAATTATAGTACAAAAGATATTATAATAATTTTGATCAATCATGGTAGAAG
Found at i:7956094 original size:26 final size:28
Alignment explanation
Indices: 7956045--7956096 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
7956035 GATATTATAA
**
7956045 TAATTTTAGCTAATTATAGGATAAAGAG
1 TAATTTTAGCTAATTATAACATAAAGAG
7956073 TAATTTT-G-TAATTATAACATAAAG
1 TAATTTTAGCTAATTATAACATAAAG
7956097 GTATTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 1 0.05
28 7 0.32
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.38
Consensus pattern (28 bp):
TAATTTTAGCTAATTATAACATAAAGAG
Found at i:7959219 original size:24 final size:23
Alignment explanation
Indices: 7959190--7959259 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
7959180 AATTTAATTT
7959190 TTATTACTATTTTTTAGATTATTA
1 TTATTA-TATTTTTTAGATTATTA
* *
7959214 TTATTATTATTTTTAAGCATTTTTA
1 TTATTA-TATTTTTTAG-ATTATTA
*
7959239 ATA-TATA-TTTTTA-ATTATTA
1 TTATTATATTTTTTAGATTATTA
7959259 T
1 T
7959260 CTTACTTGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
20 6 0.16
22 5 0.13
23 2 0.05
24 17 0.45
25 8 0.21
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (23 bp):
TTATTATATTTTTTAGATTATTA
Found at i:7959384 original size:17 final size:18
Alignment explanation
Indices: 7959337--7959386 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
7959327 ATCATGCATA
7959337 AATATATAAAAAAAAACTT
1 AATATATAAAAAAAAAC-T
7959356 AA-A-ATAACAAAAATAA-T
1 AATATATAA-AAAAA-AACT
7959373 AATATATAAAAAAA
1 AATATATAAAAAAA
7959387 TTATAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
17 7 0.26
18 12 0.44
19 8 0.30
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (18 bp):
AATATATAAAAAAAAACT
Found at i:7959399 original size:17 final size:17
Alignment explanation
Indices: 7959346--7959403 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
7959336 AAATATATAA
*
7959346 AAAAAAACT-TAAAA-T
1 AAAAAAATTATAAAATT
* *
7959361 AACAAAAATAATAATATAT
1 AA-AAAAATTATAAAAT-T
7959380 AAAAAAATTATAAAATT
1 AAAAAAATTATAAAATT
7959397 AAAAAAA
1 AAAAAAA
7959404 AAATTACCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 2 0.06
16 5 0.15
17 12 0.35
18 12 0.35
19 3 0.09
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAAAAATTATAAAATT
Found at i:7960005 original size:15 final size:15
Alignment explanation
Indices: 7959977--7960016 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7959967 CTTTTTCTTT
*
7959977 GGTGC-AGGTGGCTC
1 GGTGCTAGGTTGCTC
7959991 GGTGCTAGGTTGCTC
1 GGTGCTAGGTTGCTC
*
7960006 GATGCTAGGTT
1 GGTGCTAGGTT
7960017 CCTCCCTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.10, C:0.17, G:0.42, T:0.30
Consensus pattern (15 bp):
GGTGCTAGGTTGCTC
Found at i:7960538 original size:12 final size:12
Alignment explanation
Indices: 7960497--7960529 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7960487 TAAATCGATG
*
7960497 TTATTATTAATA
1 TTATTATTAAAA
7960509 TTATTATTAAAA
1 TTATTATTAAAA
7960521 TTATTATTA
1 TTATTATTA
7960530 TTAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATTAAAA
Found at i:7961018 original size:36 final size:35
Alignment explanation
Indices: 7960930--7961063 Score: 96
Period size: 35 Copynumber: 3.8 Consensus size: 35
7960920 AATTTAAGAG
* * ** *
7960930 TAAAGAGATCGGGATTGAACTGCGAGTCAAAAAAA
1 TAAAAAGATCGGGATTAAACCACAAGTCAAAAAAA
*
7960965 TAAAAAGA-CTGGCATTAAACCACAAGTCAAAAAAA
1 TAAAAAGATC-GGGATTAAACCACAAGTCAAAAAAA
* * * *
7961000 -AAATGAAGATCGGGATTAAATCGCGAA-TC-AGAGAA
1 TAAA--AAGATCGGGATTAAACCAC-AAGTCAAAAAAA
* *
7961035 TAAAAAGATCAGGATTAAACCATAAGTCA
1 TAAAAAGATCGGGATTAAACCACAAGTCA
7961064 GAGAATAACG
Statistics
Matches: 76, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
33 2 0.03
34 21 0.28
35 31 0.41
36 19 0.25
37 3 0.04
ACGTcount: A:0.50, C:0.13, G:0.19, T:0.17
Consensus pattern (35 bp):
TAAAAAGATCGGGATTAAACCACAAGTCAAAAAAA
Found at i:7961140 original size:34 final size:34
Alignment explanation
Indices: 7960930--7961224 Score: 128
Period size: 34 Copynumber: 8.6 Consensus size: 34
7960920 AATTTAAGAG
* ** *
7960930 TAAAGAGATCGGGATTGAACTGCGAGTCAAAAAAA
1 TAAAGAGATCGGGATTAAACCACGAGTC-AGAAAA
* * * *
7960965 TAAAAAGA-CTGGCATTAAACCACAAGTCAAAAAA
1 TAAAGAGATC-GGGATTAAACCACGAGTCAGAAAA
* * * * *
7960999 AAAATGAAGATCGGGATTAAATCGCGAATCAGAGAA
1 TAAA-G-AGATCGGGATTAAACCACGAGTCAGAAAA
* * ** *
7961035 TAAAAAGATCAGGATTAAACCATAAGTCAGAGAA
1 TAAAGAGATCGGGATTAAACCACGAGTCAGAAAA
* ** * ** * * * * *
7961069 TAACGTTAACTTAGATTGAATCACAAGTTAAAAAA
1 TAAAGAGATC-GGGATTAAACCACGAGTCAGAAAA
*
7961104 TAAAGAGATCGGGATTAAACCACGAGTCAGAGAA
1 TAAAGAGATCGGGATTAAACCACGAGTCAGAAAA
* * * ** * * *
7961138 TAACA-ATAGTCGAGACTAAACCGTGATTTA-AAAG
1 TAA-AGAGA-TCGGGATTAAACCACGAGTCAGAAAA
** *
7961172 TAAAGAGATCGGGATTAAACTGCGAGTCAGAACA
1 TAAAGAGATCGGGATTAAACCACGAGTCAGAAAA
*
7961206 TAAAGAGATCGAGATTAAA
1 TAAAGAGATCGGGATTAAA
7961225 TCGTAAGTTA
Statistics
Matches: 184, Mismatches: 67, Indels: 19
0.68 0.25 0.07
Matches are distributed among these distances:
33 16 0.09
34 86 0.47
35 58 0.32
36 23 0.12
37 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (34 bp):
TAAAGAGATCGGGATTAAACCACGAGTCAGAAAA
Found at i:7961251 original size:36 final size:33
Alignment explanation
Indices: 7961208--7961308 Score: 100
Period size: 36 Copynumber: 2.9 Consensus size: 33
7961198 TCAGAACATA
7961208 AAGAGATCGAGATTAAATCGTAAGTTAGAGAAAT
1 AAGAGATC-AGATTAAATCGTAAGTTAGAGAAAT
*
7961242 ACTGAAGATCAAGATTAAATCACG-AA-TTAGAG-AAT
1 A-AG-AGATC-AGATTAAAT--CGTAAGTTAGAGAAAT
*
7961277 AAGAGATCAGGATTAAATCGTAAGTCAGAGAA
1 AAGAGATCA-GATTAAATCGTAAGTTAGAGAA
7961309 TAACAACAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
31 2 0.04
32 3 0.05
33 18 0.33
34 3 0.05
35 5 0.09
36 20 0.36
37 2 0.04
38 2 0.04
ACGTcount: A:0.48, C:0.09, G:0.22, T:0.22
Consensus pattern (33 bp):
AAGAGATCAGATTAAATCGTAAGTTAGAGAAAT
Found at i:7961276 original size:241 final size:240
Alignment explanation
Indices: 7960835--7961312 Score: 593
Period size: 241 Copynumber: 2.0 Consensus size: 240
7960825 ATCAAGATTG
* *
7960835 AACTTGGATTGAATCATAAGTAAAAAAATAAAGAGACCGAGACTAAACCACAAGTCAAAGAATAA
1 AACTTAGATTGAATCACAAGTAAAAAAATAAAGAGACCGAGACTAAACCACAAGTCAAAGAATAA
* * * * *
7960900 CAACAACGGGATTAAATCGTAATTTAAGAGTAAAGAGATCGGGATTGAACTGCGAGTCAAAAAAA
66 CAACAACGAGACTAAACCGTAATTTAAAAGTAAAGAGATCGGGATTAAACTGCGAGTCAAAAAAA
** *
7960965 TAAAAAGACTGGCATTAAACCACAAGTCAAAAAAAAAATGAAGATCGGGATTAAATCGCGAATCA
131 TAAAAAGACTGGCATTAAACCACAAGTCAAAAAAAAAATGAAGATCAAGATTAAATCACGAATCA
7961030 GAGAATAAAAAGATCAGGATTAAACCATAAGTCAGAGAATAACGTT
196 GAGAAT-AAAAGATCAGGATTAAACCATAAGTCAGAGAATAACGTT
* * * * * *
7961076 AACTTAGATTGAATCACAAGTTAAAAAATAAAGAGATCGGGATTAAACCACGAGTCAGAGAATAA
1 AACTTAGATTGAATCACAAGTAAAAAAATAAAGAGACCGAGACTAAACCACAAGTCAAAGAATAA
* * * * *
7961141 CAATAGTCGAGACTAAACCGTGATTTAAAAGTAAAGAGATCGGGATTAAACTGCGAGTC-AGAAC
66 CAACA-ACGAGACTAAACCGTAATTTAAAAGTAAAGAGATCGGGATTAAACTGCGAGTCAAAAAA
* * ** * * * * *
7961205 ATAAAGAGA-TCGAG-ATTAAATCGTAAGTTAGAGAAATACTGAAGATCAAGATTAAATCACGAA
130 ATAAAAAGACT-G-GCATTAAACCACAAGTCAAAAAAAAAATGAAGATCAAGATTAAATCACGAA
* * * *
7961268 TTAGAGAATAAGAGATCAGGATTAAATCGTAAGTCAGAGAATAAC
193 TCAGAGAATAAAAGATCAGGATTAAACCATAAGTCAGAGAATAAC
7961313 AACAGTCGAT
Statistics
Matches: 200, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
240 34 0.17
241 119 0.60
242 47 0.23
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (240 bp):
AACTTAGATTGAATCACAAGTAAAAAAATAAAGAGACCGAGACTAAACCACAAGTCAAAGAATAA
CAACAACGAGACTAAACCGTAATTTAAAAGTAAAGAGATCGGGATTAAACTGCGAGTCAAAAAAA
TAAAAAGACTGGCATTAAACCACAAGTCAAAAAAAAAATGAAGATCAAGATTAAATCACGAATCA
GAGAATAAAAGATCAGGATTAAACCATAAGTCAGAGAATAACGTT
Found at i:7961283 original size:171 final size:171
Alignment explanation
Indices: 7961006--7961433 Score: 461
Period size: 171 Copynumber: 2.5 Consensus size: 171
7960996 AAAAAAATGA
* * * * * * * * *
7961006 AGATCGGGATTAAATCGCGAATCAGAGAATAAAAAGATCAGGATTAAACCATAAGTCAGAG-AAT
1 AGATCGGGATTAAACCGCGAGTAAAAAAATAAAGAGACCAGAATTAAACCGTAAGTCAGAGAAAT
* * * * * * * *
7961070 AACGTTA-A-CTTAGATTGAATCAC-AAGTTAAAAAATAAAGAGATCGGGATTAAACCACGAGTC
66 AATG-AAGATC-AAGATTAAATCACGAA-TTAGAGAAT-AAGAGATCAGGATTAAACCACAAGTC
* *
7961132 AGAGAATAACAATAGTCGAGACTAAACCGTGATTTAAAAGTAAAG
127 AGAGAATAACAACAGTCGAGACTAAACCATGATTTAAAAGTAAAG
* * * * * * *
7961177 AGATCGGGATTAAACTGCGAGTCAGAACATAAAGAGATC-GAGATTAAATCGTAAGTTAGAGAAA
1 AGATCGGGATTAAACCGCGAGTAAAAAAATAAAGAGACCAGA-ATTAAACCGTAAGTCAGAGAAA
* * **
7961241 TACTGAAGATCAAGATTAAATCACGAATTAGAGAATAAGAGATCAGGATTAAATCGTAAGTCAGA
65 TAATGAAGATCAAGATTAAATCACGAATTAGAGAATAAGAGATCAGGATTAAACCACAAGTCAGA
* * *
7961306 GAATAACAACAGTCGATACTAAATCATGATTTAAGAGTAAAG
130 GAATAACAACAGTCGAGACTAAACCATGATTTAAAAGTAAAG
*
7961348 AGATCGGGATTGAACCGCGAGTAAAAAAATAAAGAGACCAGAATTAAACCGTAAGTCAGAGAAAT
1 AGATCGGGATTAAACCGCGAGTAAAAAAATAAAGAGACCAGAATTAAACCGTAAGTCAGAGAAAT
*
7961413 AATGAAGATCGAGATTAAATC
66 AATGAAGATCAAGATTAAATC
7961434 GTAAGTCAAA
Statistics
Matches: 214, Mismatches: 37, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
170 1 0.00
171 184 0.86
172 26 0.12
173 3 0.01
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (171 bp):
AGATCGGGATTAAACCGCGAGTAAAAAAATAAAGAGACCAGAATTAAACCGTAAGTCAGAGAAAT
AATGAAGATCAAGATTAAATCACGAATTAGAGAATAAGAGATCAGGATTAAACCACAAGTCAGAG
AATAACAACAGTCGAGACTAAACCATGATTTAAAAGTAAAG
Found at i:7973967 original size:14 final size:15
Alignment explanation
Indices: 7973934--7973972 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7973924 TGAGTATAGG
* *
7973934 TTTAGGATTTTGGAT
1 TTTAGGGTTTTAGAT
7973949 TTTAGGGTTTTAG-T
1 TTTAGGGTTTTAGAT
7973963 TTTAGGGTTT
1 TTTAGGGTTT
7973973 GAGGTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.56
Consensus pattern (15 bp):
TTTAGGGTTTTAGAT
Found at i:7974000 original size:14 final size:14
Alignment explanation
Indices: 7973941--7974000 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
7973931 AGGTTTAGGA
*
7973941 TTTTGGATTTTAGGG
1 TTTTGG-TTTTAAGG
* *
7973956 TTTTAGTTTTAGGG
1 TTTTGGTTTTAAGG
* *
7973970 TTTGAGGTTTGAA-G
1 TTT-TGGTTTTAAGG
7973984 TTTTGGTTTTAAGG
1 TTTTGGTTTTAAGG
7973998 TTT
1 TTT
7974001 AAAGGATTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
13 7 0.19
14 19 0.53
15 10 0.28
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.55
Consensus pattern (14 bp):
TTTTGGTTTTAAGG
Found at i:7974452 original size:22 final size:22
Alignment explanation
Indices: 7974426--7974467 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7974416 TTGTTATTAT
7974426 TAAAACAA-TTAAAAATTTATTC
1 TAAAA-AATTTAAAAATTTATTC
*
7974448 TAAAAAATTTTAAAATTTAT
1 TAAAAAATTTAAAAATTTAT
7974468 CATGCATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAATTTAAAAATTTATTC
Found at i:7975567 original size:12 final size:12
Alignment explanation
Indices: 7975550--7975579 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7975540 AATTAAATCG
7975550 ATATTATTATTA
1 ATATTATTATTA
7975562 ATATTATTATTA
1 ATATTATTATTA
7975574 ATATTA
1 ATATTA
7975580 AACTAGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:7979974 original size:6 final size:6
Alignment explanation
Indices: 7979963--7979989 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7979953 CCGAACCTTG
7979963 CCTTCA CCTTCA CCTTCA CCTTCA CCT
1 CCTTCA CCTTCA CCTTCA CCTTCA CCT
7979990 ACTCCCACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTTCA
Found at i:7980002 original size:6 final size:6
Alignment explanation
Indices: 7979993--7980028 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
7979983 TTCACCTACT
7979993 CCCACA CCCACA CCCACA CCCACA CCCACA CCCACA
1 CCCACA CCCACA CCCACA CCCACA CCCACA CCCACA
7980029 ATTGGAACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCACA
Found at i:7983209 original size:14 final size:13
Alignment explanation
Indices: 7983184--7983218 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
7983174 AAATTATAAC
7983184 ATATTA-ATTTTA
1 ATATTATATTTTA
7983196 ATATTATATATTTA
1 ATATTATAT-TTTA
7983210 ATATTATAT
1 ATATTATAT
7983219 GAATACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.29
13 2 0.10
14 13 0.62
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATTATATTTTA
Found at i:7983426 original size:74 final size:74
Alignment explanation
Indices: 7983344--7983490 Score: 215
Period size: 74 Copynumber: 2.0 Consensus size: 74
7983334 TAGAAATTTA
* ** * *
7983344 ATTATTATATTTTTTTCATTTAATAATCTTAAATTAATTATTAACTCCTTTAATTTTTT-TCGTT
1 ATTATTATATTCTTTTCATTTAATAATCTTAAACCAATAATTAACT-CTTTAATTTTTTCTCATT
7983408 AAAAATATTG
65 AAAAATATTG
* *
7983418 ATTATTATATTCTTTTCATTTAATAATTTTAAACCAATAATTAACTCTTTTATTTTTTCTCATTA
1 ATTATTATATTCTTTTCATTTAATAATCTTAAACCAATAATTAACTCTTTAATTTTTTCTCATTA
7983483 AAAATATT
66 AAAATATT
7983491 AATGTAATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 11 0.17
74 54 0.83
ACGTcount: A:0.35, C:0.10, G:0.01, T:0.54
Consensus pattern (74 bp):
ATTATTATATTCTTTTCATTTAATAATCTTAAACCAATAATTAACTCTTTAATTTTTTCTCATTA
AAAATATTG
Found at i:7983730 original size:16 final size:18
Alignment explanation
Indices: 7983698--7983732 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
7983688 TTGAATTTGA
7983698 TAATATTGATCCAATTAC
1 TAATATTGATCCAATTAC
7983716 TAAT-TTGAT-CAATTAC
1 TAATATTGATCCAATTAC
7983732 T
1 T
7983733 CAAAGTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 5 0.29
18 4 0.24
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (18 bp):
TAATATTGATCCAATTAC
Found at i:7984815 original size:24 final size:22
Alignment explanation
Indices: 7984756--7984815 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 22
7984746 TTAAAAAAAG
7984756 TTATTTTTTAAAAATTGAAACA
1 TTATTTTTTAAAAATTGAAACA
* *
7984778 TGATTTTTCATAAAAATTCAGAAATA
1 TTATTTTT--TAAAAATT--GAAACA
7984804 TTATTTTTTAAA
1 TTATTTTTTAAA
7984816 TTAAAATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 7 0.23
24 12 0.39
26 12 0.39
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (22 bp):
TTATTTTTTAAAAATTGAAACA
Found at i:7984856 original size:19 final size:20
Alignment explanation
Indices: 7984820--7984858 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7984810 TTTAAATTAA
7984820 AATATTTAAAATATAAAAAT
1 AATATTTAAAATATAAAAAT
*
7984840 AATATTTTAAA-ATAAAAAT
1 AATATTTAAAATATAAAAAT
7984859 TCAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AATATTTAAAATATAAAAAT
Found at i:7985025 original size:21 final size:21
Alignment explanation
Indices: 7985001--7985046 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7984991 GCTTAAAAAT
7985001 ATTTTTTTTGAAAATTTT-GAG
1 ATTTTTTTT-AAAATTTTAGAG
*
7985022 ATTTTTTTTTAAATTTTAGAG
1 ATTTTTTTTAAAATTTTAGAG
7985043 ATTT
1 ATTT
7985047 AAAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (21 bp):
ATTTTTTTTAAAATTTTAGAG
Found at i:7985028 original size:20 final size:21
Alignment explanation
Indices: 7985003--7985046 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7984993 TTAAAAATAT
7985003 TTTTTTTGAAAATTTT-GAGA
1 TTTTTTTGAAAATTTTAGAGA
**
7985023 TTTTTTTTTAAATTTTAGAGA
1 TTTTTTTGAAAATTTTAGAGA
7985044 TTT
1 TTT
7985047 AAAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.61
Consensus pattern (21 bp):
TTTTTTTGAAAATTTTAGAGA
Found at i:7986720 original size:25 final size:26
Alignment explanation
Indices: 7986692--7986747 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
7986682 ACAATCTTAG
*
7986692 TCAC-AAGCTAGGTAAAGGTCTTTTT
1 TCACTAAGCCAGGTAAAGGTCTTTTT
*
7986717 TCACTCAGCCAGGTAAAGGTCTTTTT
1 TCACTAAGCCAGGTAAAGGTCTTTTT
*
7986743 CCACT
1 TCACT
7986748 CACTAGCCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
TCACTAAGCCAGGTAAAGGTCTTTTT
Found at i:7997419 original size:15 final size:14
Alignment explanation
Indices: 7997389--7997435 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
7997379 TATAATTATT
* *
7997389 TTTAAAAAATATTA
1 TTTAAAAATTAATA
7997403 TTTAAAAATTTAATA
1 TTTAAAAA-TTAATA
7997418 TTTAAAAATTAATA
1 TTTAAAAATTAATA
7997432 TTTA
1 TTTA
7997436 TAATTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTAAAAATTAATA
Found at i:7999236 original size:26 final size:26
Alignment explanation
Indices: 7999208--7999256 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
7999198 TGTTTTTGTT
7999208 TTTTA-TTTTTATTTTATGAAATTAA
1 TTTTATTTTTTATTTTATGAAATTAA
*
7999233 TTTTATTTTTTATTTTTTGAAATT
1 TTTTATTTTTTATTTTATGAAATT
7999257 TAAAATTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (26 bp):
TTTTATTTTTTATTTTATGAAATTAA
Found at i:7999265 original size:27 final size:26
Alignment explanation
Indices: 7999213--7999265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7999203 TTGTTTTTTA
**
7999213 TTTTTATTTTATGAAATTAATTTTAT
1 TTTTTATTTTATGAAATTAAAATTAT
*
7999239 TTTTTATTTTTTGAAATTTAAAATTAT
1 TTTTTATTTTATGAAA-TTAAAATTAT
7999266 GTTTGATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (26 bp):
TTTTTATTTTATGAAATTAAAATTAT
Found at i:8002007 original size:2 final size:2
Alignment explanation
Indices: 8002000--8002025 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8001990 TAAATGAGAA
8002000 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8002026 CCTCCTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8002688 original size:16 final size:16
Alignment explanation
Indices: 8002667--8002701 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8002657 CTTCATGAAC
8002667 TAAATCAAGCCAATGA
1 TAAATCAAGCCAATGA
*
8002683 TAAATCAAGCGAATGA
1 TAAATCAAGCCAATGA
8002699 TAA
1 TAA
8002702 GATGGAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.20
Consensus pattern (16 bp):
TAAATCAAGCCAATGA
Found at i:8010263 original size:309 final size:309
Alignment explanation
Indices: 8009704--8010321 Score: 1236
Period size: 309 Copynumber: 2.0 Consensus size: 309
8009694 TTTTCAAACC
8009704 TATCATTTATTTTGCAGATGATGGGAAAGTCATGGTCTCTATTTATCAAGGAATACAATCAAAGG
1 TATCATTTATTTTGCAGATGATGGGAAAGTCATGGTCTCTATTTATCAAGGAATACAATCAAAGG
8009769 CTCTTGAATTGGTTGGTTGTCTTTTCCCTTGTCATGGTGGTGGTTGGCCGGTTTATCATAAAGTT
66 CTCTTGAATTGGTTGGTTGTCTTTTCCCTTGTCATGGTGGTGGTTGGCCGGTTTATCATAAAGTT
8009834 CATTTTGATTGAAATGGCTGCATGGATACTATTTATATTCTTGGAGACATATACGAGGATGTTTC
131 CATTTTGATTGAAATGGCTGCATGGATACTATTTATATTCTTGGAGACATATACGAGGATGTTTC
8009899 GGTCAGCAGAGTCTCTTTACTACAACCCTGTGTGGCATTTTGTTGTGGCCACTTGGGAAACTCTT
196 GGTCAGCAGAGTCTCTTTACTACAACCCTGTGTGGCATTTTGTTGTGGCCACTTGGGAAACTCTT
8009964 GTCTACAGTCCCATTCTTGATTTGGACAGGTAATATAGCACTTCTGAAA
261 GTCTACAGTCCCATTCTTGATTTGGACAGGTAATATAGCACTTCTGAAA
8010013 TATCATTTATTTTGCAGATGATGGGAAAGTCATGGTCTCTATTTATCAAGGAATACAATCAAAGG
1 TATCATTTATTTTGCAGATGATGGGAAAGTCATGGTCTCTATTTATCAAGGAATACAATCAAAGG
8010078 CTCTTGAATTGGTTGGTTGTCTTTTCCCTTGTCATGGTGGTGGTTGGCCGGTTTATCATAAAGTT
66 CTCTTGAATTGGTTGGTTGTCTTTTCCCTTGTCATGGTGGTGGTTGGCCGGTTTATCATAAAGTT
8010143 CATTTTGATTGAAATGGCTGCATGGATACTATTTATATTCTTGGAGACATATACGAGGATGTTTC
131 CATTTTGATTGAAATGGCTGCATGGATACTATTTATATTCTTGGAGACATATACGAGGATGTTTC
8010208 GGTCAGCAGAGTCTCTTTACTACAACCCTGTGTGGCATTTTGTTGTGGCCACTTGGGAAACTCTT
196 GGTCAGCAGAGTCTCTTTACTACAACCCTGTGTGGCATTTTGTTGTGGCCACTTGGGAAACTCTT
8010273 GTCTACAGTCCCATTCTTGATTTGGACAGGTAATATAGCACTTCTGAAA
261 GTCTACAGTCCCATTCTTGATTTGGACAGGTAATATAGCACTTCTGAAA
8010322 CAAACTTGCT
Statistics
Matches: 309, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
309 309 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.37
Consensus pattern (309 bp):
TATCATTTATTTTGCAGATGATGGGAAAGTCATGGTCTCTATTTATCAAGGAATACAATCAAAGG
CTCTTGAATTGGTTGGTTGTCTTTTCCCTTGTCATGGTGGTGGTTGGCCGGTTTATCATAAAGTT
CATTTTGATTGAAATGGCTGCATGGATACTATTTATATTCTTGGAGACATATACGAGGATGTTTC
GGTCAGCAGAGTCTCTTTACTACAACCCTGTGTGGCATTTTGTTGTGGCCACTTGGGAAACTCTT
GTCTACAGTCCCATTCTTGATTTGGACAGGTAATATAGCACTTCTGAAA
Found at i:8016196 original size:12 final size:12
Alignment explanation
Indices: 8016152--8016218 Score: 59
Period size: 12 Copynumber: 5.7 Consensus size: 12
8016142 TAAATTTTAG
*
8016152 TTTGAATTAAAA
1 TTTGATTTAAAA
*
8016164 TTTGATTCAAAA
1 TTTGATTTAAAA
8016176 TTTAAGATTTAAAA
1 TTT--GATTTAAAA
*
8016190 TTTGATTT-GAA
1 TTTGATTTAAAA
*
8016201 TTTGA-TCAAAA
1 TTTGATTTAAAA
8016212 TTT-ATTT
1 TTTGATTT
8016219 TATTTGAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
10 2 0.05
11 13 0.30
12 18 0.41
14 11 0.25
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (12 bp):
TTTGATTTAAAA
Found at i:8016213 original size:11 final size:12
Alignment explanation
Indices: 8016160--8016214 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 12
8016150 AGTTTGAATT
8016160 AAAATTTGATTC
1 AAAATTTGATTC
*
8016172 AAAATTTAAGATTT
1 AAAATTT--GATTC
8016186 AAAATTTGATT-
1 AAAATTTGATTC
**
8016197 TGAATTTGA-TC
1 AAAATTTGATTC
8016208 AAAATTT
1 AAAATTT
8016215 ATTTTATTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 12 0.34
12 11 0.31
14 11 0.31
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (12 bp):
AAAATTTGATTC
Found at i:8016218 original size:26 final size:27
Alignment explanation
Indices: 8016189--8016239 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
8016179 AAGATTTAAA
8016189 ATTTGATTTGAATTTGA-TCAAAATTT
1 ATTTGATTTGAATTTGATTCAAAATTT
*
8016215 ATTTTATTTGAATTTGATTCAAAAT
1 ATTTGATTTGAATTTGATTCAAAAT
8016240 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (27 bp):
ATTTGATTTGAATTTGATTCAAAATTT
Found at i:8020857 original size:27 final size:28
Alignment explanation
Indices: 8020805--8020871 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
8020795 TAATGAGATA
* *
8020805 TTTAAAATTATATCTAAATTTAAAAT-T
1 TTTAATATAATATCTAAATTTAAAATGT
*
8020832 TTTAATATAATATTTAAA-TTATAAATGT
1 TTTAATATAATATCTAAATTTA-AAATGT
*
8020860 ATTAAT-TAATAT
1 TTTAATATAATAT
8020872 AATGTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
27 25 0.74
28 6 0.18
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TTTAATATAATATCTAAATTTAAAATGT
Found at i:8020875 original size:17 final size:16
Alignment explanation
Indices: 8020833--8020878 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8020823 TTTAAAATTT
*
8020833 TTAATATAATATTTAAA
1 TTAATATAATGTTT-AA
8020850 TT-ATA-AATGTATTAA
1 TTAATATAATGT-TTAA
8020865 TTAATATAATGTTT
1 TTAATATAATGTTT
8020879 TAAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
15 8 0.32
16 10 0.40
17 7 0.28
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (16 bp):
TTAATATAATGTTTAA
Found at i:8020881 original size:17 final size:17
Alignment explanation
Indices: 8020833--8020881 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
8020823 TTTAAAATTT
* *
8020833 TTAATATAATATTTAAA
1 TTAATATAATGTTTTAA
*
8020850 TT-ATA-AATGTATTAA
1 TTAATATAATGTTTTAA
8020865 TTAATATAATGTTTTAA
1 TTAATATAATGTTTTAA
8020882 AAAATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 9 0.35
16 6 0.23
17 11 0.42
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (17 bp):
TTAATATAATGTTTTAA
Found at i:8020920 original size:21 final size:22
Alignment explanation
Indices: 8020886--8020926 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8020876 TTTTAAAAAA
* *
8020886 TTAATTATTTTATTATTTAAAG
1 TTAATTATTATATTAATTAAAG
8020908 TTAA-TATTATATTAATTAA
1 TTAATTATTATATTAATTAA
8020927 TTAATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATTATTATATTAATTAAAG
Found at i:8022066 original size:12 final size:12
Alignment explanation
Indices: 8022049--8022074 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8022039 GGAGTTTAGG
8022049 GACCGCGACCGT
1 GACCGCGACCGT
8022061 GACCGCGACCGT
1 GACCGCGACCGT
8022073 GA
1 GA
8022075 TGATCATCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.38, G:0.35, T:0.08
Consensus pattern (12 bp):
GACCGCGACCGT
Found at i:8041969 original size:23 final size:23
Alignment explanation
Indices: 8041910--8041969 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
8041900 TTATGGGAGA
* * *
8041910 AAAACTTAATAAAATTTTTTAGT
1 AAAATTTATTAAATTTTTTTAGT
* * * *
8041933 AAATTTTGTGAAATTTTTTTATT
1 AAAATTTATTAAATTTTTTTAGT
8041956 AAAATTTATTAAAT
1 AAAATTTATTAAAT
8041970 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (23 bp):
AAAATTTATTAAATTTTTTTAGT
Found at i:8041978 original size:20 final size:20
Alignment explanation
Indices: 8041953--8041993 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
8041943 AAATTTTTTT
8041953 ATTAAAATTTATTAAA-TAAA
1 ATTAAAATTTA-TAAATTAAA
8041973 ATTAAAATTTATAAATTAAA
1 ATTAAAATTTATAAATTAAA
8041993 A
1 A
8041994 AATTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTAAAATTTATAAATTAAA
Found at i:8042129 original size:19 final size:20
Alignment explanation
Indices: 8042094--8042134 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8042084 AAAAAATTTG
*
8042094 ATAAAATTTTTGCAA-TTAA
1 ATAAAATTTTTGAAATTTAA
8042113 ATAAATATTTTT-AAATTTAA
1 ATAAA-ATTTTTGAAATTTAA
8042133 AT
1 AT
8042135 TATAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
ATAAAATTTTTGAAATTTAA
Found at i:8043056 original size:15 final size:16
Alignment explanation
Indices: 8043022--8043085 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 16
8043012 ATTAATATGT
8043022 AAAAATAAGAAATTGA
1 AAAAATAAGAAATTGA
* *
8043038 AAAAGTAAGAAATTCA
1 AAAAATAAGAAATTGA
* * *
8043054 AAATAT-ATACATTGA
1 AAAAATAAGAAATTGA
*
8043069 AAAAGTAAGAAATTGA
1 AAAAATAAGAAATTGA
8043085 A
1 A
8043086 GTTAAGATTT
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
15 10 0.28
16 26 0.72
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.22
Consensus pattern (16 bp):
AAAAATAAGAAATTGA
Found at i:8044752 original size:27 final size:25
Alignment explanation
Indices: 8044705--8044765 Score: 61
Period size: 27 Copynumber: 2.4 Consensus size: 25
8044695 TAAAATATCT
* *
8044705 AAAAATTAAAAACTTCCAAAAGCTAAA
1 AAAAATTAAAAAATT-CAAAA-ATAAA
*
8044732 AAAAATTAAAAAATAT-AAAAATATA
1 AAAAATTAAAAAAT-TCAAAAATAAA
8044757 AAAAATTAA
1 AAAAATTAA
8044766 TTTTAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 12 0.40
26 4 0.13
27 13 0.43
28 1 0.03
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.21
Consensus pattern (25 bp):
AAAAATTAAAAAATTCAAAAATAAA
Found at i:8046533 original size:23 final size:23
Alignment explanation
Indices: 8046474--8046533 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
8046464 TTATGGGAGA
* * *
8046474 AAAACTTAATAAAATTTTTTAGT
1 AAAATTTATTAAATTTTTTTAGT
* * * *
8046497 AAATTTTGTGAAATTTTTTTATT
1 AAAATTTATTAAATTTTTTTAGT
8046520 AAAATTTATTAAAT
1 AAAATTTATTAAAT
8046534 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (23 bp):
AAAATTTATTAAATTTTTTTAGT
Found at i:8046542 original size:20 final size:20
Alignment explanation
Indices: 8046517--8046557 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
8046507 AAATTTTTTT
8046517 ATTAAAATTTATTAAA-TAAA
1 ATTAAAATTTA-TAAATTAAA
8046537 ATTAAAATTTATAAATTAAA
1 ATTAAAATTTATAAATTAAA
8046557 A
1 A
8046558 AATTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTAAAATTTATAAATTAAA
Found at i:8046693 original size:19 final size:20
Alignment explanation
Indices: 8046658--8046698 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8046648 AAAAAATTTG
*
8046658 ATAAAATTTTTGCAA-TTAA
1 ATAAAATTTTTGAAATTTAA
8046677 ATAAATATTTTT-AAATTTAA
1 ATAAA-ATTTTTGAAATTTAA
8046697 AT
1 AT
8046699 TATAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
ATAAAATTTTTGAAATTTAA
Found at i:8047624 original size:15 final size:16
Alignment explanation
Indices: 8047590--8047653 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 16
8047580 ATTAATATGT
8047590 AAAAATAAGAAATTGA
1 AAAAATAAGAAATTGA
* *
8047606 AAAAGTAAGAAATTCA
1 AAAAATAAGAAATTGA
* * *
8047622 AAATAT-ATACATTGA
1 AAAAATAAGAAATTGA
*
8047637 AAAAGTAAGAAATTGA
1 AAAAATAAGAAATTGA
8047653 A
1 A
8047654 GTTAAGATTT
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
15 10 0.28
16 26 0.72
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.22
Consensus pattern (16 bp):
AAAAATAAGAAATTGA
Found at i:8054001 original size:1 final size:1
Alignment explanation
Indices: 8053995--8054019 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
8053985 TTGAATCCAG
8053995 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
8054020 GGAACGTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8054395 original size:16 final size:16
Alignment explanation
Indices: 8054374--8054419 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
8054364 AGGTTTTTGG
8054374 ATATTTATTTTCACAA
1 ATATTTATTTTCACAA
**
8054390 ATATTTAAATTTTTTCAA
1 ATATTT--ATTTTCACAA
8054408 ATATTTATTTTC
1 ATATTTATTTTC
8054420 TAAAAAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 11 0.44
18 14 0.56
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57
Consensus pattern (16 bp):
ATATTTATTTTCACAA
Found at i:8055603 original size:24 final size:24
Alignment explanation
Indices: 8055571--8055616 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8055561 AGAAAATGAT
*
8055571 GGATTTTCAAAACGAACAGCTTTC
1 GGATTTTCAAAACAAACAGCTTTC
*
8055595 GGATTTTCAAATCAAACAGCTT
1 GGATTTTCAAAACAAACAGCTT
8055617 CCAATTCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (24 bp):
GGATTTTCAAAACAAACAGCTTTC
Found at i:8058098 original size:30 final size:30
Alignment explanation
Indices: 8058057--8058129 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
8058047 TGTCCAATTG
* * * *
8058057 AGGGTTTAATTGAGTGAAAATACATGTACA
1 AGGGTTCAATTGAATGAAAATAAATATACA
**
8058087 AGGGTTCAATTGAATGAAAATAAATATTTA
1 AGGGTTCAATTGAATGAAAATAAATATACA
8058117 AGGGTTCAATTGA
1 AGGGTTCAATTGA
8058130 TCCGAAATCG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (30 bp):
AGGGTTCAATTGAATGAAAATAAATATACA
Found at i:8061280 original size:1 final size:1
Alignment explanation
Indices: 8061274--8061303 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
8061264 CTTTACTTTT
8061274 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8061304 CCCTAGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8063639 original size:18 final size:18
Alignment explanation
Indices: 8063616--8063656 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8063606 TGTAATGAGC
8063616 ATATCACAAAACTTGGTA
1 ATATCACAAAACTTGGTA
* *
8063634 ATATCAGAAAGCTTGGTA
1 ATATCACAAAACTTGGTA
8063652 ATATC
1 ATATC
8063657 GTAGGATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (18 bp):
ATATCACAAAACTTGGTA
Found at i:8066893 original size:21 final size:21
Alignment explanation
Indices: 8066854--8066911 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
8066844 TCTTAACAAC
**
8066854 AAAACAAATTAAATTATTATT
1 AAAACAAATTAAAAGATTATT
*
8066875 AAAATAAATTAAAAGATTAAATT
1 AAAACAAATTAAAAGATT--ATT
8066898 AAACACAAAATTAA
1 AAA-AC-AAATTAA
8066912 GAATAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 15 0.52
23 6 0.21
24 1 0.03
25 7 0.24
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAACAAATTAAAAGATTATT
Found at i:8070036 original size:40 final size:40
Alignment explanation
Indices: 8069976--8070060 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
8069966 CTGAAAAGTG
* * *
8069976 CTATGACAATGCTGATAAATCGGGTTCAAAAGGTATGTTA
1 CTATGACAAGGCTGACAAATCAGGTTCAAAAGGTATGTTA
*
8070016 CTATGACAAGGCTGACAAATCAGGTTCAAGAGGTATGTTA
1 CTATGACAAGGCTGACAAATCAGGTTCAAAAGGTATGTTA
8070056 CTATG
1 CTATG
8070061 TGTAGGATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (40 bp):
CTATGACAAGGCTGACAAATCAGGTTCAAAAGGTATGTTA
Found at i:8074025 original size:19 final size:20
Alignment explanation
Indices: 8073990--8074030 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8073980 AAAAAATTTG
*
8073990 ATAAAATTTTTGCAA-TTAA
1 ATAAAATTTTTGAAATTTAA
8074009 ATAAATATTTTT-AAATTTAA
1 ATAAA-ATTTTTGAAATTTAA
8074029 AT
1 AT
8074031 TATAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
ATAAAATTTTTGAAATTTAA
Found at i:8077734 original size:19 final size:19
Alignment explanation
Indices: 8077710--8077746 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8077700 TTAATTTTAA
8077710 TTTATATTACTTTTATATT
1 TTTATATTACTTTTATATT
*
8077729 TTTATATTATTTTTATAT
1 TTTATATTACTTTTATAT
8077747 CATATCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTATATTACTTTTATATT
Found at i:8082635 original size:24 final size:24
Alignment explanation
Indices: 8082584--8082638 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
8082574 ACATCTCATT
* *
8082584 CTTTATTTTTTATTTTTTGTTCTTA
1 CTTT-TTTTTTATTTTCTGCTCTTA
8082609 CTTTTTTTTTATTTTCT-CTCTTCA
1 CTTTTTTTTTATTTTCTGCTCTT-A
8082633 CTTTTT
1 CTTTTT
8082639 AAAATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 4 0.15
24 19 0.70
25 4 0.15
ACGTcount: A:0.09, C:0.15, G:0.02, T:0.75
Consensus pattern (24 bp):
CTTTTTTTTTATTTTCTGCTCTTA
Found at i:8083987 original size:24 final size:24
Alignment explanation
Indices: 8083955--8084002 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8083945 AAGAAAATGA
8083955 TGGATTTTCAAAACGAACAGCTTC
1 TGGATTTTCAAAACGAACAGCTTC
8083979 TGGATTTTCAAAACGAACAGCTTC
1 TGGATTTTCAAAACGAACAGCTTC
8084003 CAATTCTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (24 bp):
TGGATTTTCAAAACGAACAGCTTC
Found at i:8086487 original size:30 final size:30
Alignment explanation
Indices: 8086446--8086518 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
8086436 TGTCCAATTG
* * *
8086446 AGGGTTTAATTGAGTGAAAATACATGTACA
1 AGGGTTCAATTGAATGAAAATAAATGTACA
**
8086476 AGGGTTCAATTGAATGAAAATAAATGTTTA
1 AGGGTTCAATTGAATGAAAATAAATGTACA
8086506 AGGGTTCAATTGA
1 AGGGTTCAATTGA
8086519 TCCGAAATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (30 bp):
AGGGTTCAATTGAATGAAAATAAATGTACA
Found at i:8088722 original size:16 final size:16
Alignment explanation
Indices: 8088703--8088737 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8088693 GGATTCTATC
* *
8088703 ATATTTTTAGTGTGAT
1 ATATTTTCAGTGCGAT
8088719 ATATTTTCAGTGCGAT
1 ATATTTTCAGTGCGAT
8088735 ATA
1 ATA
8088738 ATTGAATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.49
Consensus pattern (16 bp):
ATATTTTCAGTGCGAT
Found at i:8091930 original size:20 final size:21
Alignment explanation
Indices: 8091892--8091930 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8091882 ATTTGGAAAT
*
8091892 AAATTCAATTCCTTTTTTTTC
1 AAATTCAATTCCTTATTTTTC
*
8091913 AAATT-AATTGCTTATTTT
1 AAATTCAATTCCTTATTTT
8091931 AGCATCCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.28, C:0.13, G:0.03, T:0.56
Consensus pattern (21 bp):
AAATTCAATTCCTTATTTTTC
Found at i:8092160 original size:18 final size:18
Alignment explanation
Indices: 8092137--8092178 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8092127 TGTAATGAGC
8092137 ATATCACAAAACTTGGTA
1 ATATCACAAAACTTGGTA
* **
8092155 ATATCAGAAAGTTTGGTA
1 ATATCACAAAACTTGGTA
8092173 ATATCA
1 ATATCA
8092179 TAGGATAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (18 bp):
ATATCACAAAACTTGGTA
Found at i:8095433 original size:21 final size:21
Alignment explanation
Indices: 8095394--8095451 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
8095384 TCTTAACAAC
**
8095394 AAAACAAATTAAATTATTATT
1 AAAACAAATTAAAAGATTATT
*
8095415 AAAATAAATTAAAAGATTAAATT
1 AAAACAAATTAAAAGATT--ATT
8095438 AAACACAAAATTAA
1 AAA-AC-AAATTAA
8095452 GAATAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 15 0.52
23 6 0.21
24 1 0.03
25 7 0.24
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAACAAATTAAAAGATTATT
Found at i:8095766 original size:12 final size:13
Alignment explanation
Indices: 8095751--8095787 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
8095741 TTTAAAAAGT
8095751 ATTTTAT-TTATA
1 ATTTTATATTATA
8095763 ATTTT-TATTATA
1 ATTTTATATTATA
8095775 ATTTTATAATTAT
1 ATTTTAT-ATTAT
8095788 TAGAAATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.05
12 15 0.68
13 1 0.05
14 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATTTTATATTATA
Found at i:8098562 original size:40 final size:40
Alignment explanation
Indices: 8098502--8098586 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
8098492 CTGAAAAGTG
* * *
8098502 CTATGACAATGCTGATAAATCGGGTTCCAA-AGGTATGTTA
1 CTATGACAAGGCTGACAAATCAGGTT-CAAGAGGTATGTTA
8098542 CTATGACAAGGCTGACAAATCAGGTTCAAGAGGTATGTTA
1 CTATGACAAGGCTGACAAATCAGGTTCAAGAGGTATGTTA
8098582 CTATG
1 CTATG
8098587 TGTAGGATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.07
40 38 0.93
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (40 bp):
CTATGACAAGGCTGACAAATCAGGTTCAAGAGGTATGTTA
Found at i:8111289 original size:5 final size:5
Alignment explanation
Indices: 8111252--8111279 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8111242 TGACCCATAT
8111252 AAAGC AAAGC AAAGC AAAGC AAAGC AAA
1 AAAGC AAAGC AAAGC AAAGC AAAGC AAA
8111280 AGAAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.18, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGC
Found at i:8111290 original size:15 final size:16
Alignment explanation
Indices: 8111252--8111294 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
8111242 TGACCCATAT
*
8111252 AAAGCAAAGC-AAAGC
1 AAAGCAAAGCAAAAGA
8111267 AAAGCAAAGCAAAAGA
1 AAAGCAAAGCAAAAGA
8111283 AAAG-AAAG-AAAA
1 AAAGCAAAGCAAAA
8111295 CACCTAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 4 0.15
15 14 0.54
16 8 0.31
ACGTcount: A:0.70, C:0.12, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAGCAAAGCAAAAGA
Found at i:8113676 original size:3 final size:3
Alignment explanation
Indices: 8113662--8113695 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8113652 AAACCGAATC
*
8113662 ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8113696 AGGAATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:8120155 original size:7 final size:7
Alignment explanation
Indices: 8120134--8120176 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
8120124 CATTGTTTTG
8120134 TTTTGTT
1 TTTTGTT
*
8120141 TTGT-TT
1 TTTTGTT
8120147 TTTTGTT
1 TTTTGTT
8120154 TTTTGTT
1 TTTTGTT
*
8120161 TCTTGTT
1 TTTTGTT
8120168 TTTT-TT
1 TTTTGTT
8120174 TTT
1 TTT
8120177 CTCTTACTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 10 0.32
7 21 0.68
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (7 bp):
TTTTGTT
Found at i:8120159 original size:20 final size:21
Alignment explanation
Indices: 8120129--8120176 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
8120119 TCATGCATTG
*
8120129 TTTTGTTTTG-TT-TTGTTTT
1 TTTTTTTTTGTTTCTTGTTTT
8120148 TTTGTTTTTTGTTTCTTGTTTT
1 TTT-TTTTTTGTTTCTTGTTTT
8120170 TTTTTTT
1 TTTTTTT
8120177 CTCTTACTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 6 0.24
21 6 0.24
22 10 0.40
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTGTTTCTTGTTTT
Found at i:8120166 original size:14 final size:12
Alignment explanation
Indices: 8120129--8120176 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
8120119 TCATGCATTG
*
8120129 TTTTGTTTTGTT
1 TTTTTTTTTGTT
8120141 TTGTTTTTTTGTT
1 TT-TTTTTTTGTT
8120154 TTTTGTTTCTTGTT
1 TTTT-TTT-TTGTT
8120168 TTTTTTTTT
1 TTTTTTTTT
8120177 CTCTTACTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 6 0.19
13 17 0.53
14 9 0.28
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:8123560 original size:27 final size:26
Alignment explanation
Indices: 8123490--8123560 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 26
8123480 TATAGTAATG
*
8123490 AAATTAAAAATAATGAT-A-AAAATA
1 AAATTAATAATAATGATGATAAAATA
*
8123514 AAATTAAT--TATTGTAGTGATAAAATTA
1 AAATTAATAATAATG-A-TGATAAAA-TA
8123541 AAATTAATAATAATGATGAT
1 AAATTAATAATAATGATGAT
8123561 GAATTATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
22 4 0.11
23 1 0.03
24 8 0.22
25 1 0.03
26 4 0.11
27 14 0.38
28 1 0.03
29 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (26 bp):
AAATTAATAATAATGATGATAAAATA
Found at i:8124834 original size:16 final size:17
Alignment explanation
Indices: 8124801--8124835 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8124791 AAATTAAGAT
8124801 TTTATTTGAAATAAAAA
1 TTTATTTGAAATAAAAA
*
8124818 TTTATTT-AAATATAAA
1 TTTATTTGAAATAAAAA
8124834 TT
1 TT
8124836 AAAAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
TTTATTTGAAATAAAAA
Found at i:8124857 original size:31 final size:31
Alignment explanation
Indices: 8124809--8124875 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
8124799 ATTTTATTTG
* *
8124809 AAATAAAAATTTATTT-AAATATAAATTA-AA
1 AAATTAAAATTTATTTAAAAAAT-AATTATAA
8124839 AAATTAAAATTTATTTTAAAAAATAATTATAA
1 AAATTAAAATTTA-TTTAAAAAATAATTATAA
8124871 AAATT
1 AAATT
8124876 TATTAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 12 0.38
31 8 0.25
32 12 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATTAAAATTTATTTAAAAAATAATTATAA
Found at i:8125115 original size:93 final size:93
Alignment explanation
Indices: 8125007--8125195 Score: 238
Period size: 93 Copynumber: 2.0 Consensus size: 93
8124997 TAATTTATTA
* * * * * *
8125007 ATTTTTTTTGGTAAAATAAATTTAAAATAGATAGATTGTTCAGTATC-TCATGTCAAAATTAAAT
1 ATTTTTTTTGATAAAATAAATCTAAAATAAATAAATTGTTCAAT-TCTTCATGTCAAAATAAAAT
* *
8125071 ATA-CAGTATCTGACAGTTTAAGATATGTG
65 ATATC-GTATCTGACAGCTTAAGATAGGTG
* * **
8125100 ATTTTTTTTTATAAAATAAATCTGAAATAAATAAATTGTTCAATTCTTCATGTCAGGATAAAATA
1 ATTTTTTTTGATAAAATAAATCTAAAATAAATAAATTGTTCAATTCTTCATGTCAAAATAAAATA
8125165 TATCGTATCTGACAGCTTAAGATAGGTG
66 TATCGTATCTGACAGCTTAAGATAGGTG
8125193 ATT
1 ATT
8125196 ATAAATTATA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
92 2 0.02
93 79 0.96
94 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (93 bp):
ATTTTTTTTGATAAAATAAATCTAAAATAAATAAATTGTTCAATTCTTCATGTCAAAATAAAATA
TATCGTATCTGACAGCTTAAGATAGGTG
Found at i:8125781 original size:6 final size:6
Alignment explanation
Indices: 8125764--8125794 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8125754 TTTTGATAAG
8125764 AAGAAA AA-AAA AAGAAA AAGAAA AAGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AA
8125795 AACGAACGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:8125907 original size:3 final size:3
Alignment explanation
Indices: 8125899--8125924 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8125889 TTTGGTTTTG
8125899 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
8125925 TAAAGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8126986 original size:14 final size:13
Alignment explanation
Indices: 8126950--8126978 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8126940 AACATCATGC
8126950 ATTTAATA-ATAA
1 ATTTAATATATAA
8126962 ATTTAATATATAA
1 ATTTAATATATAA
8126975 ATTT
1 ATTT
8126979 TTATATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTAATATATAA
Found at i:8131888 original size:2 final size:2
Alignment explanation
Indices: 8131881--8131922 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8131871 AGAAAATTCA
8131881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8131923 TAAAAGAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8132176 original size:9 final size:9
Alignment explanation
Indices: 8132162--8132194 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
8132152 AATATTAAAT
8132162 AAAAATTTA
1 AAAAATTTA
8132171 AAAAA-TTA
1 AAAAATTTA
8132179 AAAAATTTA
1 AAAAATTTA
8132188 AAAAATT
1 AAAAATT
8132195 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAAATTTA
Found at i:8132184 original size:17 final size:17
Alignment explanation
Indices: 8132162--8132226 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
8132152 AATATTAAAT
8132162 AAAAATTTAAAAAATTA
1 AAAAATTTAAAAAATTA
8132179 AAAAATTTAAAAAATT-
1 AAAAATTTAAAAAATTA
****
8132195 ATTTTTTTAAAAAATCTA
1 AAAAATTTAAAAAAT-TA
8132213 AAAAATTATAAAAA
1 AAAAATT-TAAAAA
8132227 TAAAAATATG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
16 11 0.30
17 17 0.46
18 3 0.08
19 6 0.16
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATTTAAAAAATTA
Found at i:8132250 original size:42 final size:40
Alignment explanation
Indices: 8132161--8132268 Score: 94
Period size: 42 Copynumber: 2.6 Consensus size: 40
8132151 CAATATTAAA
* * * *
8132161 TAAAAATTTAAAAAATTAAAAAATTTAAAAAATTATTTTTT
1 TAAAAATATAAAAAATTAAAAAA-TTAAAAAATAAATATTT
*
8132202 TAAAAAATCTAAAAAATTATAAAAA-TAAAAATATGAAATATTT
1 T-AAAAATATAAAAAATTA-AAAAATTAAAAA-AT-AAATATTT
*
8132245 TAAAAA-ATATAAAAATTACAAAAT
1 TAAAAATATA-AAAAATTAAAAAAT
8132269 ATACGAAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
41 13 0.24
42 31 0.56
43 11 0.20
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (40 bp):
TAAAAATATAAAAAATTAAAAAATTAAAAAATAAATATTT
Found at i:8132283 original size:35 final size:34
Alignment explanation
Indices: 8132211--8132301 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 34
8132201 TTAAAAAATC
*
8132211 TAAAAAATTATAAAAATA-AAAATATGAAATATTT
1 TAAAAAA-TATAAAAATACAAAATATGAAATATCT
8132245 TAAAAAATATAAAAATTACAAAATATACGAAA-A-CT
1 TAAAAAATATAAAAA-TACAAAATAT--GAAATATCT
8132280 TAAAAAATA-AAAAACT-CAAAAT
1 TAAAAAATATAAAAA-TACAAAAT
8132302 TTTAATAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
33 14 0.27
34 15 0.29
35 17 0.33
36 1 0.02
37 4 0.08
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.25
Consensus pattern (34 bp):
TAAAAAATATAAAAATACAAAATATGAAATATCT
Found at i:8132286 original size:19 final size:16
Alignment explanation
Indices: 8132204--8132293 Score: 69
Period size: 16 Copynumber: 5.3 Consensus size: 16
8132194 TATTTTTTTA
8132204 AAAAATCTAAAAAATTAT
1 AAAAAT-TAAAAAA-TAT
8132222 AAAAA-T-AAAAATAT
1 AAAAATTAAAAAATAT
*
8132236 GAAATATTTTAAAAAATAT
1 -AAA-A-ATTAAAAAATAT
*
8132255 AAAAATTACAAAATAT
1 AAAAATTAAAAAATAT
8132271 ACGAAAACTTAAAAAATA-
1 A--AAAA-TTAAAAAATAT
8132289 AAAAA
1 AAAAA
8132294 CTCAAAATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
14 3 0.05
15 8 0.13
16 17 0.28
17 1 0.02
18 14 0.23
19 17 0.28
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (16 bp):
AAAAATTAAAAAATAT
Found at i:8132295 original size:16 final size:17
Alignment explanation
Indices: 8132244--8132300 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
8132234 ATGAAATATT
*
8132244 TTAAAAAATATAAAAA-
1 TTAAAAAATACAAAAAC
*
8132260 TTACAAAATATACGAAAAC
1 TTA-AAAA-ATACAAAAAC
8132279 TTAAAAAATA-AAAAAC
1 TTAAAAAATACAAAAAC
*
8132295 TCAAAA
1 TTAAAA
8132301 TTTTAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 13 0.38
17 7 0.21
18 11 0.32
19 3 0.09
ACGTcount: A:0.68, C:0.09, G:0.02, T:0.21
Consensus pattern (17 bp):
TTAAAAAATACAAAAAC
Found at i:8132326 original size:20 final size:20
Alignment explanation
Indices: 8132285--8132331 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
8132275 AAACTTAAAA
**
8132285 AATAAAAAACTCAAAATTTT
1 AATAAAAAACTCAAAAAATT
8132305 AATAAAAAA-TCCAAAAAATT
1 AATAAAAAACT-CAAAAAATT
8132325 AA-AAAAA
1 AATAAAAA
8132332 GTCTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (20 bp):
AATAAAAAACTCAAAAAATT
Found at i:8132329 original size:18 final size:18
Alignment explanation
Indices: 8132288--8132349 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
8132278 CTTAAAAAAT
* **
8132288 AAAAAACTCAAAATTTTA
1 AAAAAAGTCAAAAAATTA
*
8132306 ATAAAAAATCCAAAAAATTA
1 A-AAAAAGT-CAAAAAATTA
**
8132326 AAAAAAGTCTTAAAATTA
1 AAAAAAGTCAAAAAATTA
8132344 AAAAAA
1 AAAAAA
8132350 AAAGATTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 15 0.42
19 12 0.33
20 9 0.25
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAAGTCAAAAAATTA
Found at i:8132393 original size:25 final size:24
Alignment explanation
Indices: 8132357--8132403 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
8132347 AAAAAAGATT
*
8132357 AAAAAACTTAAAATTTTGAAAATG
1 AAAAAAATTAAAATTTTGAAAATG
*
8132381 AAAAAAATCTAAAATTTTTAAAA
1 AAAAAAAT-TAAAATTTTGAAAA
8132404 AAATCTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAAAAATTAAAATTTTGAAAATG
Found at i:8132405 original size:19 final size:19
Alignment explanation
Indices: 8132381--8132438 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
8132371 TTTGAAAATG
8132381 AAAAAAATCTAAAATTTTT
1 AAAAAAATCTAAAATTTTT
* **
8132400 AAAAAAATCTGGAAATTTAC
1 AAAAAAATCT-AAAATTTTT
*
8132420 AAAAAATTCTAAAATTTTT
1 AAAAAAATCTAAAATTTTT
8132439 TTTAAAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAAAAATCTAAAATTTTT
Found at i:8137348 original size:59 final size:60
Alignment explanation
Indices: 8137202--8137363 Score: 172
Period size: 60 Copynumber: 2.7 Consensus size: 60
8137192 TGCTTTTGTA
* * * *
8137202 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTAATAATTTTTATTTT
1 CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAATATTTTTCTTAATAATTTTTAATTT
* ** *
8137262 TAAGAAAAATTTCTA-CTTCCAATTTTTCCTCAAAAGGCT-TTTTTC-TAA-AA-TTTTAATTT
1 CAAGAAAAATTAATACCTT-CAACTTTTCCTCAAAA---TATTTTTCTTAATAATTTTTAATTT
8137321 CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAAATATTTTT
1 CAAGAAAAATTAATACCTTCAACTTTTCCTC-AAAATATTTTT
8137364 TTTATTATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
57 1 0.01
58 5 0.06
59 33 0.39
60 35 0.42
61 3 0.04
62 6 0.07
63 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (60 bp):
CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAATATTTTTCTTAATAATTTTTAATTT
Found at i:8137364 original size:59 final size:62
Alignment explanation
Indices: 8137202--8137364 Score: 176
Period size: 59 Copynumber: 2.7 Consensus size: 62
8137192 TGCTTTTGTA
* * * *
8137202 CAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAATA-TTTTTCTTAATAATTTTTATTTT
1 CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAAATATTTTTTCTTAATAATTTTTAATTT
* ** * ***
8137262 TAAGAAAAATTTCTA-CTTCCAATTTTTCCTCAAAAGGCTTTTTTC-TAA-AA-TTTTAATTT
1 CAAGAAAAATTAATACCTT-CAACTTTTCCTCAAAAATATTTTTTCTTAATAATTTTTAATTT
8137321 CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAAATATTTTTT
1 CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAAATATTTTTT
8137365 TTATTATTTT
Statistics
Matches: 82, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
59 43 0.52
60 27 0.33
61 6 0.07
62 6 0.07
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (62 bp):
CAAGAAAAATTAATACCTTCAACTTTTCCTCAAAAATATTTTTTCTTAATAATTTTTAATTT
Found at i:8137509 original size:11 final size:11
Alignment explanation
Indices: 8137493--8137546 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
8137483 AATTTAATCA
8137493 TAAAAAAAAAC
1 TAAAAAAAAAC
*
8137504 TAAAAAAATAC
1 TAAAAAAAAAC
*
8137515 TAAGAAAAATAC
1 TAA-AAAAAAAC
*
8137527 TAAATAAAATAAA
1 TAAA-AAAA-AAC
8137540 TAAAAAA
1 TAAAAAA
8137547 TATACCAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 14 0.38
12 18 0.49
13 5 0.14
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (11 bp):
TAAAAAAAAAC
Found at i:8137551 original size:25 final size:23
Alignment explanation
Indices: 8137492--8137570 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 23
8137482 AAATTTAATC
*
8137492 ATAAAAAAAAACTAAAAAAAT-A
1 ATAAAAAAATACTAAAAAAATAA
*
8137514 CTAAGAAAAATACTAAATAAAATAA
1 ATAA-AAAAATACTAAA-AAAATAA
* *
8137539 ATAAAAAATATACCAAAGAAAACAA
1 ATAAAAAA-ATACTAAA-AAAATAA
8137564 A-AAAAAA
1 ATAAAAAA
8137571 TGGCTCGACT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 3 0.06
23 11 0.23
24 15 0.32
25 18 0.38
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.14
Consensus pattern (23 bp):
ATAAAAAAATACTAAAAAAATAA
Found at i:8146263 original size:63 final size:63
Alignment explanation
Indices: 8146164--8146383 Score: 209
Period size: 63 Copynumber: 3.5 Consensus size: 63
8146154 ATGAACCTTT
** * *
8146164 TAAAAGGATTATTTAAGGTGTTTT-TGTATGAAAAATGCCTTAAATAATCCTTATATATTTAAA
1 TAAAAGGATTATTTAAGGCATTTTCTATA-CAAAAATGCCTTAAATAATCCTTATATATTTAAA
* **
8146227 TAAAAGGATTAATTAAGGCATTTTCTATACAAAAATGCCTTAAATAATCCTT-TCATATTTTTA
1 TAAAAGGATTATTTAAGGCATTTTCTATACAAAAATGCCTTAAATAATCCTTAT-ATATTTAAA
** * * * *
8146290 TAAAAAAATTATTTAAGGTAGTTCTGTATGA-AAAACAT--CTTAAATAATCTTTATATATTTAA
1 TAAAAGGATTATTTAAGGCA-TTTTCTAT-ACAAAA-ATGCCTTAAATAATCCTTATATATTTAA
8146352 A
63 A
* *
8146353 T-AAGGGTATTATTTAAGGCATTTTTTATACA
1 TAAAAGG-ATTATTTAAGGCATTTTCTATACA
8146384 GAAACTTATT
Statistics
Matches: 127, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
61 1 0.01
62 10 0.08
63 99 0.78
64 14 0.11
65 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (63 bp):
TAAAAGGATTATTTAAGGCATTTTCTATACAAAAATGCCTTAAATAATCCTTATATATTTAAA
Found at i:8147062 original size:8 final size:8
Alignment explanation
Indices: 8147040--8147087 Score: 53
Period size: 8 Copynumber: 5.8 Consensus size: 8
8147030 TATTTTTTAA
*
8147040 TTATTTAT
1 TTATATAT
8147048 TTATATAT
1 TTATATAT
8147056 ACTTATATAT
1 --TTATATAT
8147066 TTATATAAT
1 TTATAT-AT
8147075 TT-TATAT
1 TTATATAT
8147082 TTATAT
1 TTATAT
8147088 TAAAAATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
7 4 0.11
8 19 0.54
9 4 0.11
10 8 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATATAT
Found at i:8147072 original size:16 final size:16
Alignment explanation
Indices: 8147037--8147087 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
8147027 AATTATTTTT
*
8147037 TAATTATTTATTTATA
1 TAATTATATATTTATA
8147053 TATACTTATATATTTATA
1 TA-A-TTATATATTTATA
*
8147071 TAATTTTATATTTATA
1 TAATTATATATTTATA
8147087 T
1 T
8147088 TAAAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 15 0.48
17 2 0.06
18 14 0.45
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATTATATATTTATA
Found at i:8147100 original size:23 final size:24
Alignment explanation
Indices: 8147070--8147130 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
8147060 ATATATTTAT
8147070 ATAATTTTATATTTATATT-AAAA
1 ATAATTTTATATTTATATTAAAAA
* *
8147093 ATAATTTT-T-TATATCTTAAAAA
1 ATAATTTTATATTTATATTAAAAA
8147115 ATAATATTTTATATTT
1 AT-A-ATTTTATATTT
8147131 TTAAAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
21 6 0.20
22 7 0.23
23 9 0.30
24 5 0.17
25 1 0.03
26 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
ATAATTTTATATTTATATTAAAAA
Found at i:8147113 original size:21 final size:21
Alignment explanation
Indices: 8147087--8147147 Score: 86
Period size: 22 Copynumber: 2.9 Consensus size: 21
8147077 TATATTTATA
*
8147087 TTAAAAATAATTTTTTATATC
1 TTAAAAATAATATTTTATATC
*
8147108 TTAAAAAATAATATTTTATATT
1 TT-AAAAATAATATTTTATATC
*
8147130 TTTAAAATAATATTTTAT
1 TTAAAAATAATATTTTAT
8147148 TAATTTCAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 17 0.47
22 19 0.53
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TTAAAAATAATATTTTATATC
Found at i:8147117 original size:22 final size:21
Alignment explanation
Indices: 8147081--8147147 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
8147071 TAATTTTATA
*
8147081 TTTATA-TT-AAAAATAATTT
1 TTTATATTTAAAAAATAATAT
8147100 TTTATATCTTAAAAAATAATAT
1 TTTATAT-TTAAAAAATAATAT
**
8147122 TTTATATTTTTAAAATAATAT
1 TTTATATTTAAAAAATAATAT
8147143 TTTAT
1 TTTAT
8147148 TAATTTCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 6 0.14
21 19 0.45
22 17 0.40
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:8148627 original size:18 final size:17
Alignment explanation
Indices: 8148616--8148685 Score: 79
Period size: 18 Copynumber: 4.0 Consensus size: 17
8148606 ATTTGGATTG
*
8148616 TAATTTTGATTTTGATT
1 TAATTTTGATTTTAATT
*
8148633 TGAATTTTG-TTTTAATGG
1 T-AATTTTGATTTTAAT-T
*
8148651 TAATTTTAATTTTAATCT
1 TAATTTTGATTTTAAT-T
8148669 TAATTTTGATTTTAATT
1 TAATTTTGATTTTAATT
8148686 ACGATTTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.32
18 30 0.68
ACGTcount: A:0.27, C:0.01, G:0.10, T:0.61
Consensus pattern (17 bp):
TAATTTTGATTTTAATT
Found at i:8148660 original size:6 final size:6
Alignment explanation
Indices: 8148601--8148685 Score: 64
Period size: 6 Copynumber: 14.3 Consensus size: 6
8148591 AGCCCCAAAC
** * * * * *
8148601 TTTTAA TTTGGA TTGTAA TTTTGA TTTTGA TTTGAA TTTT-G TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
** * *
8148648 TGGTAA TTTTAA TTTTAA TCTTAA TTTTGA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TT
8148686 ACGATTTTAT
Statistics
Matches: 58, Mismatches: 20, Indels: 2
0.73 0.25 0.03
Matches are distributed among these distances:
5 4 0.07
6 54 0.93
ACGTcount: A:0.26, C:0.01, G:0.12, T:0.61
Consensus pattern (6 bp):
TTTTAA
Found at i:8150336 original size:23 final size:24
Alignment explanation
Indices: 8150257--8150349 Score: 81
Period size: 23 Copynumber: 4.0 Consensus size: 24
8150247 TGCATAGTAA
8150257 TTTAT-ATTT-TTGCATGATATTT
1 TTTATAATTTATTGCATGATATTT
*
8150279 TTGGTATGATTTATT--AT-ATATTT
1 TT--TATAATTTATTGCATGATATTT
** *
8150302 TGCATAATTTATTGCATGGTATTT
1 TTTATAATTTATTGCATGATATTT
*
8150326 TTTAT-ATTTATTGCTTGATATTT
1 TTTATAATTTATTGCATGATATTT
8150349 T
1 T
8150350 GGCATGATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
21 9 0.16
22 2 0.04
23 26 0.46
24 13 0.23
25 4 0.07
26 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTATAATTTATTGCATGATATTT
Found at i:8152252 original size:276 final size:275
Alignment explanation
Indices: 8151537--8152262 Score: 767
Period size: 276 Copynumber: 2.6 Consensus size: 275
8151527 AAGAGTATTT
* * * * *
8151537 TTTTTTCAGTTTTGCATATA-TTTTGAATATGAAATCTTGTTTTTTCTATGCATTGCATACATGT
1 TTTTTT-AGTTTTGTATATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATAT
* * *
8151601 ATTTGCATATACATTTTTTATCCATATAAACATTTTTATATGTATATTATTTCATTTGTTTGGGG
65 ATTTGCATATACATTTTTTATCCATGTAAACATTTTTGTATG--TACTATTTCATTTGTTTGGGG
* * * *
8151666 CAATCTTTGCCTTTGTAGTTTTGTACATAGTTTTGAATATGAATTCTTATTGTTGCTTTGCATTA
128 AAATCTTTGCCTTTTTAG-TTTGTACATAGTTTTGAATATGAATTATTATTGTTGCTATGCATTA
*
8151731 CAAACATGTATTTACAAATATATTTTTATCCATGTCAACATTTTTATATGTACATTACATTATTT
192 CAAACATGTATTTACAAATATATTTTTATCCATGTCAACATCTTTATATGTACATTACATTATTT
*
8151796 GTTTAGAGCAATTTTTGCC
257 GTTTAGAGCAATCTTTGCC
* * * * * * *
8151815 -TTTTCAATTTTGTATATAGTTTTGAATATAAATTCTTG-TTGTTACTATACATTACAAACATCT
1 TTTTTTAGTTTTGTATATAGTTTTGAATATGAATTCTTGTTTG-TACTATGCATTGCATACATAT
* * * *
8151878 ATTTGCATATACA-TTTTTATCTATGTAAACGTTTTTGTATGTACACTATTTCATTTATTTGGGA
65 ATTTGCATATACATTTTTTATCCATGTAAACATTTTTGTATGT--ACTATTTCATTTGTTTGGGG
* ** *
8151942 AAATCTTTACCTTTTTAGTGTTGTACATAGTTTTGAATATGAATTATTATT-TTTATCATGTATT
128 AAATCTTTGCCTTTTTAGT-TTGTACATAGTTTTGAATATGAATTATTATTGTTGCT-ATGCATT
* ** * * * *
8152006 GCATTCATGTATTTGC-ATTATATTTTTATCCATGT-AAGCATCTTTGTATGTACATTA-TTCTA
191 ACAAACATGTATTTACAAATATATTTTTATCCATGTCAA-CATCTTTATATGTACATTACAT-TA
*
8152068 TTTGTTT-G-GGATAGTCTTTGCC
254 TTTGTTTAGAGCA-A-TCTTTGCC
* * * *
8152090 TTTTTTAGTTTTGTACATAGTTTTGAATATGAATTTTTGTTTGTACCATGTATTGCATACATATA
1 TTTTTTAGTTTTGTATATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATATA
* * * *
8152155 TTTGCATATACATTTTCTTATCCATGCAGACATTTTTGTATGT-CTA-TT-ATTTGTATGGGGTA
66 TTTGCATATACATTTT-TTATCCATGTAAACATTTTTGTATGTACTATTTCATTTGTTTGGGGAA
** *
8152217 ATCTTTGGTTTTTTCAATTTGGGTACATAAGTTTTGAATATGAATT
130 ATCTTTGCCTTTTT-AGTTT--GTACAT-AGTTTTGAATATGAATT
8152263 CTTGTTTTGT
Statistics
Matches: 371, Mismatches: 59, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
273 25 0.07
274 10 0.03
275 64 0.17
276 194 0.52
277 56 0.15
278 22 0.06
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (275 bp):
TTTTTTAGTTTTGTATATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATATA
TTTGCATATACATTTTTTATCCATGTAAACATTTTTGTATGTACTATTTCATTTGTTTGGGGAAA
TCTTTGCCTTTTTAGTTTGTACATAGTTTTGAATATGAATTATTATTGTTGCTATGCATTACAAA
CATGTATTTACAAATATATTTTTATCCATGTCAACATCTTTATATGTACATTACATTATTTGTTT
AGAGCAATCTTTGCC
Found at i:8152268 original size:138 final size:134
Alignment explanation
Indices: 8151538--8152269 Score: 641
Period size: 138 Copynumber: 5.3 Consensus size: 134
8151528 AGAGTATTTT
* * * * *
8151538 TTTTTCAGTTTTGCATATA-TTTTGAATATGAAATCTTGTTTTTTCTATGCATTGCATACATGTA
1 TTTTT-AGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATGTA
* * *
8151602 TTTGCATATACATTTTTTATCCATATAAACATTTTTATATGTATATTATTTCATTTGTTTGGGGC
65 TTTGCATATACA-TTTTTATCCATGT-AACATTTTTGTATG--TACTATTT-ATTTGTTTGGGGC
8151667 AATCTTTGCC
125 AATCTTTGCC
* * * * * *
8151677 TTTGTAGTTTTGTACATAGTTTTGAATATGAATTCTT-ATTGTTGCTTTGCATTACAAACATGTA
1 TTTTTAGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTG-TACTATGCATTGCATACATGTA
* * * * * * *
8151741 TTTACAAATATATTTTTATCCATGTCAACATTTTTATATGTACATTACATTATTTGTTTAGAGCA
65 TTTGCATATACATTTTTATCCATGT-AACATTTTTGTATGTAC--TA-TTTATTTGTTTGGGGCA
*
8151806 ATTTTTGCC
126 ATCTTTGCC
* * * * * * * *
8151815 TTTTCAATTTTGTATATAGTTTTGAATATAAATTCTTG-TTGTTACTATACATTACAAACATCTA
1 TTTTTAGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTG-TACTATGCATTGCATACATGTA
* * * **
8151879 TTTGCATATACATTTTTATCTATGTAAACGTTTTTGTATGTACACTATTTCATTTATTTGGGAAA
65 TTTGCATATACATTTTTATCCATGT-AACATTTTTGTATGT--ACTATTT-ATTTGTTTGGGGCA
*
8151944 ATCTTTACC
126 ATCTTTGCC
* * * * * *
8151953 TTTTTAGTGTTGTACATAGTTTTGAATATGAATTATTATTTTTA-TCATGTATTGCATTCATGTA
1 TTTTTAGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTGTACT-ATGCATTGCATACATGTA
* * **
8152017 TTTGCAT-TATATTTTTATCCATGTAAGCATCTTTGTATGTACATTATTCTATTTGTTTGGGATA
65 TTTGCATATACATTTTTATCCATGTAA-CATTTTTGTATGTAC--TATT-TATTTGTTTGGGGCA
*
8152081 GTCTTTGCC
126 ATCTTTGCC
* * * *
8152090 TTTTTTAGTTTTGTACATAGTTTTGAATATGAATTTTTGTTTGTACCATGTATTGCATACATATA
1 -TTTTTAGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATGTA
* * *
8152155 TTTGCATATACATTTTCTTATCCATGCAGACATTTTTGTATGT-CTA-TTATTTGTATGGGGTAA
65 TTTGCATATACA-TTT-TTATCCATGTA-ACATTTTTGTATGTACTATTTATTTGTTTGGGGCAA
**
8152218 TCTTTGGT
127 TCTTTGCC
* *
8152226 TTTTTCAATTTGGGTACATAAGTTTTGAATATGAATTCTTGTTT
1 TTTTT-AGTTT-TGTACAT-AGTTTTGAATATGAATTCTTGTTT
8152270 TGTTGTTATG
Statistics
Matches: 485, Mismatches: 84, Indels: 49
0.78 0.14 0.08
Matches are distributed among these distances:
135 7 0.01
136 27 0.06
137 59 0.12
138 308 0.64
139 55 0.11
140 6 0.01
141 22 0.05
142 1 0.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (134 bp):
TTTTTAGTTTTGTACATAGTTTTGAATATGAATTCTTGTTTGTACTATGCATTGCATACATGTAT
TTGCATATACATTTTTATCCATGTAACATTTTTGTATGTACTATTTATTTGTTTGGGGCAATCTT
TGCC
Found at i:8154266 original size:36 final size:36
Alignment explanation
Indices: 8154172--8154295 Score: 101
Period size: 36 Copynumber: 3.4 Consensus size: 36
8154162 TCTTGGCTGC
** *
8154172 AAATCTTGAAACCCTTTGTGAATCTTAAGACCTTTGT
1 AAATCTTGAAA-CCTTTGCAAATCTTAAGACCTTTGA
* * * * *
8154209 GAATCTTGGAACC-TTGACAAATTTTAGGACTTTTGA
1 AAATCTTGAAACCTTTG-CAAATCTTAAGACCTTTGA
*
8154245 AAATCTTGAAACCTTTGCAAATCTTCAA-ACC-TTGC
1 AAATCTTGAAACCTTTGCAAATCTT-AAGACCTTTGA
* *
8154280 AAATCTTAAAAACTTT
1 AAATCTTGAAACCTTT
8154296 ATGAACCTTA
Statistics
Matches: 68, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
35 20 0.29
36 35 0.51
37 13 0.19
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (36 bp):
AAATCTTGAAACCTTTGCAAATCTTAAGACCTTTGA
Found at i:8154292 original size:18 final size:18
Alignment explanation
Indices: 8154169--8154295 Score: 78
Period size: 18 Copynumber: 7.1 Consensus size: 18
8154159 AAATCTTGGC
*
8154169 TGCAAATCTTGAAACCCTT
1 TGCAAATCTT-AAAACCTT
** *
8154188 TGTGAATCTTAAGACCTT
1 TGCAAATCTTAAAACCTT
** **
8154206 TGTGAATCTTGGAACC-T
1 TGCAAATCTTAAAACCTT
* ** *
8154223 TGACAAATTTTAGGACTTT
1 TG-CAAATCTTAAAACCTT
* *
8154242 TGAAAATCTTGAAACCTT
1 TGCAAATCTTAAAACCTT
*
8154260 TGCAAATCTTCAAACC-T
1 TGCAAATCTTAAAACCTT
*
8154277 TGCAAATCTTAAAAACTT
1 TGCAAATCTTAAAACCTT
8154295 T
1 T
8154296 ATGAACCTTA
Statistics
Matches: 82, Mismatches: 23, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
17 18 0.22
18 53 0.65
19 11 0.13
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (18 bp):
TGCAAATCTTAAAACCTT
Found at i:8154896 original size:74 final size:77
Alignment explanation
Indices: 8154759--8154920 Score: 206
Period size: 74 Copynumber: 2.1 Consensus size: 77
8154749 GATTTTATTT
* * ** ** *
8154759 AAAGTTGAAGCCTTGGTGGAGGAGTTTTGTTATTTTTCAAAAGTTGAAGCTTTAGTGGAGAAGTA
1 AAAGTTAAAGCCTTGGTGGAAGAGGATTGTTATTTTTCAAAAGTTGAAAATTCAGTGGAGAAGTA
8154824 CGTTATTTTTC-
66 CGTTATTTTTCA
*
8154835 AAAGTTAAAGCCTTGGTTGAAGAGGATT-TTATTTTTC-AAAG-TGAAAATCTCAGTGGAGAAGT
1 AAAGTTAAAGCCTTGGTGGAAGAGGATTGTTATTTTTCAAAAGTTGAAAAT-TCAGTGGAGAAGT
*
8154897 ACTTTATTTTTCA
65 ACGTTATTTTTCA
8154910 AAAGTTAAAGC
1 AAAGTTAAAGC
8154921 TTCAATGGGG
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
73 5 0.07
74 27 0.36
75 20 0.27
76 23 0.31
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (77 bp):
AAAGTTAAAGCCTTGGTGGAAGAGGATTGTTATTTTTCAAAAGTTGAAAATTCAGTGGAGAAGTA
CGTTATTTTTCA
Found at i:8154903 original size:37 final size:37
Alignment explanation
Indices: 8154812--8154911 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 37
8154802 TTGAAGCTTT
* * * *
8154812 AGTGGAGAAGTACGTTATTTTTCAAAGTTAAAGCCTT
1 AGTGGAGAAGTACTTTATTTTTCAAAGTGAAAACCTC
* * * * *
8154849 GGTTGA-AGAGGATTTTATTTTTCAAAGTGAAAATCTC
1 AGTGGAGA-AGTACTTTATTTTTCAAAGTGAAAACCTC
8154886 AGTGGAGAAGTACTTTATTTTTCAAA
1 AGTGGAGAAGTACTTTATTTTTCAAA
8154912 AGTTAAAGCT
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
36 1 0.02
37 46 0.96
38 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (37 bp):
AGTGGAGAAGTACTTTATTTTTCAAAGTGAAAACCTC
Found at i:8154941 original size:38 final size:38
Alignment explanation
Indices: 8154775--8155020 Score: 157
Period size: 38 Copynumber: 6.5 Consensus size: 38
8154765 GAAGCCTTGG
* * * *
8154775 TGGAGGAGTTTTGTTATTTTTCAAAAGTTGAAGCTTTAG
1 TGGAGGAGTATT-TTATTTTTCAAAAGTTAAAGCTTCAA
* ** **
8154814 TGGAGAAGTACGTTATTTTTC-AAAGTTAAAGCCTT-GG
1 TGGAGGAGTATTTTATTTTTCAAAAGTTAAAG-CTTCAA
* * * * * *
8154851 TTGAAGAGGATTTTATTTTTC-AAAGTGAAA-ATCTCAG
1 TGGAGGAGTATTTTATTTTTCAAAAGTTAAAGCT-TCAA
* *
8154888 TGGAGAAGTACTTTATTTTTCAAAAGTTAAAGCTTCAA
1 TGGAGGAGTATTTTATTTTTCAAAAGTTAAAGCTTCAA
* * *
8154926 TGGGGGAGTATTTTATTTTTTCAAAA-TTGAAGAC-TCGA
1 TGGAGGAGTATTTTA-TTTTTCAAAAGTTAAAG-CTTCAA
* * * *
8154964 CGGATGAGTACTTTATTGTTTAAAAAG-TAAAGCTTCGAA
1 TGGAGGAGTATTTTATT-TTTCAAAAGTTAAAGCTTC-AA
8155003 -GGAGGAGTATTTTATTTT
1 TGGAGGAGTATTTTATTTT
8155021 ATTTAAAGTT
Statistics
Matches: 159, Mismatches: 37, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 55 0.35
38 81 0.51
39 21 0.13
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (38 bp):
TGGAGGAGTATTTTATTTTTCAAAAGTTAAAGCTTCAA
Found at i:8155346 original size:12 final size:12
Alignment explanation
Indices: 8155325--8155387 Score: 85
Period size: 12 Copynumber: 5.4 Consensus size: 12
8155315 AAGTCCAAAA
8155325 ATTTTAATTTTG
1 ATTTTAATTTTG
*
8155337 ATTGTAATTTTG
1 ATTTTAATTTTG
*
8155349 ATTTTGATTTTG
1 ATTTTAATTTTG
*
8155361 ATTTTAATGTTG
1 ATTTTAATTTTG
8155373 ATTTT-ATTTT-
1 ATTTTAATTTTG
8155383 ATTTT
1 ATTTT
8155388 TGGTTTAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
10 5 0.11
11 4 0.09
12 36 0.80
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (12 bp):
ATTTTAATTTTG
Found at i:8155347 original size:18 final size:17
Alignment explanation
Indices: 8155324--8155400 Score: 82
Period size: 18 Copynumber: 4.4 Consensus size: 17
8155314 AAAGTCCAAA
8155324 AATTTTAATTTTGATTGT
1 AATTTTAATTTTGATT-T
*
8155342 AATTTTGATTTTGATTTT
1 AATTTTAATTTTGA-TTT
* *
8155360 GATTTTAATGTTGATTT
1 AATTTTAATTTTGATTT
* * *
8155377 TATTTTATTTTTGGTTT
1 AATTTTAATTTTGATTT
8155394 AATTTTA
1 AATTTTA
8155401 TTGGTCAAAG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
17 22 0.45
18 25 0.51
19 2 0.04
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (17 bp):
AATTTTAATTTTGATTT
Found at i:8155400 original size:6 final size:6
Alignment explanation
Indices: 8155325--8155387 Score: 67
Period size: 6 Copynumber: 10.8 Consensus size: 6
8155315 AAGTCCAAAA
* * * * *
8155325 ATTTTA ATTTTG ATTGTA ATTTTG ATTTTG ATTTTG ATTTTA ATGTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
8155373 ATTTT- ATTTT- ATTTT
1 ATTTTG ATTTTG ATTTT
8155388 TGGTTTAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
5 10 0.21
6 38 0.79
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (6 bp):
ATTTTG
Found at i:8156947 original size:19 final size:19
Alignment explanation
Indices: 8156923--8156973 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
8156913 TATGTGATTG
*
8156923 CATGATTATTAATTAATTA
1 CATGATTATTAATTAACTA
* *
8156942 CATGATTATTATTTGACTA
1 CATGATTATTAATTAACTA
*
8156961 TATGATTATTAAT
1 CATGATTATTAAT
8156974 ATATTTGCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.49
Consensus pattern (19 bp):
CATGATTATTAATTAACTA
Found at i:8158456 original size:20 final size:21
Alignment explanation
Indices: 8158420--8158460 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
8158410 ATAAATACAC
*
8158420 AAATTATATATATAAAATATA
1 AAATTATAGATATAAAATATA
8158441 AAATTATAGA-ATAAAATATA
1 AAATTATAGATATAAAATATA
8158461 CTTATACGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AAATTATAGATATAAAATATA
Found at i:8166646 original size:22 final size:22
Alignment explanation
Indices: 8166576--8166647 Score: 101
Period size: 22 Copynumber: 3.2 Consensus size: 22
8166566 TATCCCGATC
*
8166576 AATTTTGTAAGATCTC-CGTGCAT
1 AATTTT-TAAGATCTCTTG-GCAT
*
8166599 AATCTTTAAGATCTCTTGGCAT
1 AATTTTTAAGATCTCTTGGCAT
8166621 AATTTTTAAGATCTCTTGGCAT
1 AATTTTTAAGATCTCTTGGCAT
8166643 AATTT
1 AATTT
8166648 CGATTCGTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
22 39 0.87
23 6 0.13
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (22 bp):
AATTTTTAAGATCTCTTGGCAT
Found at i:8166877 original size:23 final size:23
Alignment explanation
Indices: 8166847--8166891 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8166837 GTCGATTCTA
8166847 TAAGACCT-CATGACATAATTTTT
1 TAAGACCTCCA-GACATAATTTTT
8166870 TAAGACCTCCAGACATAATTTT
1 TAAGACCTCCAGACATAATTTT
8166892 AATTCGTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (23 bp):
TAAGACCTCCAGACATAATTTTT
Found at i:8166988 original size:22 final size:21
Alignment explanation
Indices: 8166962--8167021 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
8166952 GTTCTATAAT
8166962 ACCTCAGGGCATTAATTCTAAG
1 ACCTCAGGGCA-TAATTCTAAG
* * *
8166984 ACCTCCGAGCATAATCTTTAAG
1 ACCTCAGGGCATAAT-TCTAAG
*
8167006 ACCTCTGGGCATAATT
1 ACCTCAGGGCATAATT
8167022 TTGATTTGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.16
22 27 0.84
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (21 bp):
ACCTCAGGGCATAATTCTAAG
Done.