Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 52 of 64
Found at i:8290061 original size:126 final size:127
Alignment explanation
Indices: 8289829--8290174 Score: 446
Period size: 126 Copynumber: 2.7 Consensus size: 127
8289819 GATTGTTAAA
* * * * *
8289829 GAGCAATTTATTTTTCCAAAAGTTCTATTGCCTATATTTAGAGGAGCCATTTATTTTTCCAAAGT
1 GAGCCATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTAGAAGAGCTATTTA-TTTTCTAAAGT
* *
8289894 TCTATTACCTCTATTTAAAGGAGCCATTTATTTTTCCAAAAGTTCCATTACCTCTATTTAGAG
65 TCTGTTGCCTCTATTTAAAGGAGCCATTTATTTTTCCAAAAGTTCCATTACCTCTATTTAGAG
* * * *
8289957 GA-CCATTTATTTTTCCAAAAATTCCATTGCCTCTATTTAGATGAGCTATTTACTTTCTAAAGTT
1 GAGCCATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTAGAAGAGCTATTTATTTTCTAAAGTT
* *** * *
8290021 CTGTTGCCTCTATTTAAAGGAGCCATTTATTTTTTCAAAAGTTTTGTTGCCTCTATTTAGTG
66 CTGTTGCCTCTATTTAAAGGAGCCATTTATTTTTCCAAAAGTTCCATTACCTCTATTTAGAG
** * *
8290083 GAGTGATTTATTTTTTC-AAAGTTCTATTGCCTCTATTTAGAAGAGCTATTTATTTTTTCAAAGT
1 GAGCCATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTAGAAGAGCTATTTATTTTCT-AAAGT
* *
8290147 TCTGTTGCCTCTGTTTAGAGGAG-CATTT
65 TCTGTTGCCTCTATTTAAAGGAGCCATTT
8290175 TACTTTCCAA
Statistics
Matches: 190, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
126 107 0.56
127 81 0.43
128 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (127 bp):
GAGCCATTTATTTTTCCAAAAGTTCTATTGCCTCTATTTAGAAGAGCTATTTATTTTCTAAAGTT
CTGTTGCCTCTATTTAAAGGAGCCATTTATTTTTCCAAAAGTTCCATTACCTCTATTTAGAG
Found at i:8290763 original size:11 final size:12
Alignment explanation
Indices: 8290745--8290776 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8290735 TTTTCTTGAA
8290745 AAATTTTTTTGG
1 AAATTTTTTTGG
8290757 AAATTTTTTTGG
1 AAATTTTTTTGG
8290769 AAATTTTT
1 AAATTTTT
8290777 AGATTTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (12 bp):
AAATTTTTTTGG
Found at i:8290764 original size:13 final size:13
Alignment explanation
Indices: 8290732--8290776 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
8290722 AAAAATTTTG
* *
8290732 AATTTTTCTTGAA
1 AATTTTTTTTGGA
*
8290745 AAATTTTTTTGGA
1 AATTTTTTTTGGA
8290758 AA-TTTTTTTGGA
1 AATTTTTTTTGGA
8290770 AATTTTT
1 AATTTTT
8290777 AGATTTCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.29, C:0.02, G:0.11, T:0.58
Consensus pattern (13 bp):
AATTTTTTTTGGA
Found at i:8290814 original size:19 final size:19
Alignment explanation
Indices: 8290792--8290837 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
8290782 TCTATGAAAG
*
8290792 TTTTT-GACGTTAATTAAA
1 TTTTTCGACGTCAATTAAA
* *
8290810 TTTTTCGATGTCGATTAAA
1 TTTTTCGACGTCAATTAAA
8290829 TTTTTCGAC
1 TTTTTCGAC
8290838 AGGATTCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTTTCGACGTCAATTAAA
Found at i:8291306 original size:13 final size:13
Alignment explanation
Indices: 8291278--8291318 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8291268 TTCTTTGGTA
8291278 TTTATTTA-TTTAT
1 TTTATTTAGTTT-T
8291291 TTTATTTAGTTTT
1 TTTATTTAGTTTT
*
8291304 TTT-CTTAGTTTT
1 TTTATTTAGTTTT
8291316 TTT
1 TTT
8291319 TTCCTTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 11 0.42
13 12 0.46
14 3 0.12
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (13 bp):
TTTATTTAGTTTT
Found at i:8291586 original size:8 final size:8
Alignment explanation
Indices: 8291557--8291586 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8291547 AAAAAAATTA
8291557 AAAAATAT
1 AAAAATAT
*
8291565 AAAAACAT
1 AAAAATAT
8291573 AAAAATAT
1 AAAAATAT
8291581 AAAAAT
1 AAAAAT
8291587 CCTTGGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAATAT
Found at i:8292872 original size:202 final size:203
Alignment explanation
Indices: 8292519--8292887 Score: 501
Period size: 202 Copynumber: 1.8 Consensus size: 203
8292509 ATTGTTAGTG
* * * *
8292519 ATTATAAGATAATGTCTACCATGATAATAAAATCAAACATCATCTTCTGTTTTAATTTTTGTGAC
1 ATTATAAGATAATGTCAAACATGATAATAAAATAAAACATCATCTTATGTTTTAATTTTTGTGAC
* ** * **
8292584 GTTAGTTTTTGTCAGTTATTTATGAACAAAAACTTCATTAAAGGCTATAATTGTCACAAAATAAA
66 ATTAGTTTTAATAAACTATTTATGAACAAAAAC-TCATTAAAGGCTATAATTGTCACAAAATAAA
* *
8292649 TGATAAAATTTGATATATTAGTAATGAAAGGTAAATCATTACAGTATTTGTGACATTATTATCGT
130 TGATAAAATCTAATATATTAGTAATGAAAGGTAAATCATTACAGTATTTGTGACATTATTATCGT
8292714 CAAAAAATA
195 CAAAAAATA
* *
8292723 ATTATAAGATAGTGTCAAACATGATAATAAAATAAAACATCA-CATTATGCTTTTATTTTTTGTG
1 ATTATAAGATAATGTCAAACATGATAATAAAATAAAACATCATC-TTATG-TTTTAATTTTTGTG
* * * * *
8292787 ACATTAGTTTTAATAAACTATTTTTGAA-AAATA-TCATTGAAGGTTATAATTGTTACAAAATAA
64 ACATTAGTTTTAATAAACTATTTATGAACAAAAACTCATTAAAGGCTATAATTGTCACAAAATAA
* *
8292850 ATGATTAAATCTAATATATTAGTGATGAAAGGTAAATC
129 ATGATAAAATCTAATATATTAGTAATGAAAGGTAAATC
8292888 GTCATGGTAT
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
202 61 0.43
203 1 0.01
204 46 0.32
205 34 0.24
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (203 bp):
ATTATAAGATAATGTCAAACATGATAATAAAATAAAACATCATCTTATGTTTTAATTTTTGTGAC
ATTAGTTTTAATAAACTATTTATGAACAAAAACTCATTAAAGGCTATAATTGTCACAAAATAAAT
GATAAAATCTAATATATTAGTAATGAAAGGTAAATCATTACAGTATTTGTGACATTATTATCGTC
AAAAAATA
Found at i:8294568 original size:39 final size:39
Alignment explanation
Indices: 8294515--8294606 Score: 130
Period size: 39 Copynumber: 2.3 Consensus size: 39
8294505 AACGATTGCC
* *
8294515 AAATAGGCATACATAACAAAAGATTTCCTAAAACTTCCAA
1 AAATATGCA-ACATAACAAAAGACTTCCTAAAACTTCCAA
* * *
8294555 AAATATGCAACATAACAGAAGACTTCCTAAAACTTCTAG
1 AAATATGCAACATAACAAAAGACTTCCTAAAACTTCCAA
8294594 AAATATGCAACAT
1 AAATATGCAACAT
8294607 TTGCTCAGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 39 0.83
40 8 0.17
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.23
Consensus pattern (39 bp):
AAATATGCAACATAACAAAAGACTTCCTAAAACTTCCAA
Found at i:8296533 original size:236 final size:233
Alignment explanation
Indices: 8295970--8296603 Score: 768
Period size: 234 Copynumber: 2.7 Consensus size: 233
8295960 TAACATCATT
* * * * *
8295970 TAAAAGTTTGTAACATTTATGTTAGCATCATATAACATTATACATTAAAGTAACAAAATTGCAAT
1 TAAAAGTTTGTAACATTTATGTTATCATCATATAATATCATATATTAAAGTGACAAAATTGCAAT
* * * ** * * *
8296035 ATTATTAATAGTTAATTAAAGTGTTTAATTTGTGATAAAAATTTATAATGTTACTTTAAATCTAT
66 GTCATTAATAGTTAATTAAAGTGTTTAATTTGTGACAAAAATTTATAA-CATACCTAAAATTTAT
** * *
8296100 CAAAAAAAATTTGTCATAGATAAAATTTTAAATTAGTGACAAAATGATAACATCACCTAAAATAA
130 CAAAAAAAATTAATCATAGATAAAATTTTAAATTAGTAACAAAATGATAACATAACCTAAAATAA
* *
8296165 AAAAATCACAAAAAATTTTCCACTAAATAAATTTGGTGG
195 AAAAATCACAAAAAATTTCCCACTAAATAAATTTGGTAG
* * * * * *
8296204 TAAAAGTTTGTAACATTTATATTATCATCATATAATACCATGTATTGATGTGACAAAATTGCAAC
1 TAAAAGTTTGTAACATTTATGTTATCATCATATAATATCATATATTAAAGTGACAAAATTGCAAT
* * *
8296269 GTCATTGATAGTTAAGTAAAGTGTTTAATTTGTGACAAAAATTAATAACACTACCTAAAATTTAT
66 GTCATTAATAGTTAATTAAAGTGTTTAATTTGTGACAAAAATTTATAACA-TACCTAAAATTTAT
* * * * *
8296334 CCAAAAAAATTCAAT-ATAGTTAAAATTTTAAATTAGTAACAAAATTATAACGTAACTTAAAATA
130 CAAAAAAAATT-AATCATAGATAAAATTTTAAATTAGTAACAAAATGATAACATAACCTAAAATA
* * *
8296398 AAAAATGTTACAAAAAAATTTCCCATCT-AATAAATTTGTTAG
194 AAAAA-ATCAC-AAAAAATTTCCCA-CTAAATAAATTTGGTAG
* * * *
8296440 TAAAAGTTTGTGACATTTATGTTATCATCATATAATATCATATATTAACGTGACGAAATTGTAAT
1 TAAAAGTTTGTAACATTTATGTTATCATCATATAATATCATATATTAAAGTGACAAAATTGCAAT
*
8296505 GTCATTAATAGTTAATTAAAATGTTTAATTTGTGACAAAAATTTATAACATCACCTAAAATTTAT
66 GTCATTAATAGTTAATTAAAGTGTTTAATTTGTGACAAAAATTTATAACAT-ACCTAAAATTTAT
* * ** * *
8296570 TAGAAAAAATCCATCACAAATAAAATTTTAAATT
130 CAAAAAAAATTAATCATAGATAAAATTTTAAATT
8296604 GGTGAGAACA
Statistics
Matches: 336, Mismatches: 57, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
234 165 0.49
235 7 0.02
236 162 0.48
237 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.36
Consensus pattern (233 bp):
TAAAAGTTTGTAACATTTATGTTATCATCATATAATATCATATATTAAAGTGACAAAATTGCAAT
GTCATTAATAGTTAATTAAAGTGTTTAATTTGTGACAAAAATTTATAACATACCTAAAATTTATC
AAAAAAAATTAATCATAGATAAAATTTTAAATTAGTAACAAAATGATAACATAACCTAAAATAAA
AAAATCACAAAAAATTTCCCACTAAATAAATTTGGTAG
Found at i:8296800 original size:203 final size:203
Alignment explanation
Indices: 8296429--8296809 Score: 448
Period size: 203 Copynumber: 1.9 Consensus size: 203
8296419 CCCATCTAAT
** * * *
8296429 AAATTTGTTAGTAAAAGTTTGTGACATTTATGTTATCATCATATAATATCATATATTAACGTGAC
1 AAATTTGACAGTAAAAGTTTGTGACATTTATGTTATCATCATATAATACCATATATTAACATAAC
* * * * * *
8296494 GAAATTGTAATGTCATTAATAGTTAATTAAAATGTTTAATTTGTGACAAAAATTTATAACATCAC
66 AAAATTGTAATATCATTAATAATTAACT-AAACGTTCAATTTGTGACAAAAATTTATAACATCAC
* * * *
8296559 CTAAAATTTATTAGAAAAAATCCATCACAAATAAAATTTTAAATTGGTGAGAACAAAATAGTTTT
130 CTAAAATCTATCAGAAAAAATCCATCAAAAATAAAATTTTAAACTGGTGAGAACAAAATAGTTTT
8296624 TCACCAAAC
195 TCACCAAAC
* * *
8296633 AAATTTGACAGTAAAAGTTTGTGATATTTATGTTATCATTATATAA-ACCATATATTGACATAAC
1 AAATTTGACAGTAAAAGTTTGTGACATTTATGTTATCATCATATAATACCATATATTAACATAAC
* * *
8296697 AAAATTGTAATATTATTAATAATTAACT-AACGCTTCATTTTGTGACAAAAA-TTA-ACCATGTC
66 AAAATTGTAATATCATTAATAATTAACTAAACG-TTCAATTTGTGACAAAAATTTATAACA--TC
** **
8296759 ACCTAAAATCTATCA-AAAATTTTTTTATCAAAAATAAAATTTTAAACTGGT
128 ACCTAAAATCTATCAGAAAA--AATCCATCAAAAATAAAATTTTAAACTGGT
8296810 AATAAAATTA
Statistics
Matches: 147, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
200 3 0.02
201 10 0.07
202 31 0.21
203 61 0.41
204 42 0.29
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (203 bp):
AAATTTGACAGTAAAAGTTTGTGACATTTATGTTATCATCATATAATACCATATATTAACATAAC
AAAATTGTAATATCATTAATAATTAACTAAACGTTCAATTTGTGACAAAAATTTATAACATCACC
TAAAATCTATCAGAAAAAATCCATCAAAAATAAAATTTTAAACTGGTGAGAACAAAATAGTTTTT
CACCAAAC
Found at i:8300885 original size:25 final size:22
Alignment explanation
Indices: 8300866--8300965 Score: 96
Period size: 22 Copynumber: 4.5 Consensus size: 22
8300856 AATAATTGTC
8300866 AATAATTTAATAGTAAATAAGT
1 AATAATTTAATAGTAAATAAGT
*
8300888 GATAATTTAATAGTAAATGAA-T
1 AATAATTTAATAGTAAAT-AAGT
* * * *
8300910 GATAATTTAGTAATAAATAATT
1 AATAATTTAATAGTAAATAAGT
* *
8300932 AATAACTTT-TTAGTAAATTAGT
1 AATAA-TTTAATAGTAAATAAGT
*
8300954 AATAATATAATA
1 AATAATTTAATA
8300966 ATATATGATA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
21 4 0.06
22 55 0.86
23 5 0.08
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.39
Consensus pattern (22 bp):
AATAATTTAATAGTAAATAAGT
Found at i:8300893 original size:22 final size:21
Alignment explanation
Indices: 8300867--8301144 Score: 94
Period size: 22 Copynumber: 12.8 Consensus size: 21
8300857 ATAATTGTCA
8300867 ATAATTTAATAGTAAATAAGTG
1 ATAATTTAATAGTAAATAA-TG
8300889 ATAATTTAATAGTAAATGAATG
1 ATAATTTAATAGTAAAT-AATG
* * *
8300911 ATAATTTAGTAATAAATAATTA
1 ATAATTTAATAGTAAATAA-TG
* * *
8300933 ATAACTTT-TTAGTAAATTAGTA
1 ATAA-TTTAATAGTAAA-TAATG
* * * * *
8300955 ATAATATAATAATATATGATA
1 ATAATTTAATAGTAAATAATG
** * *
8300976 ATACCTTAATGGTAAATCAATT
1 ATAATTTAATAGTAAAT-AATG
* * * *
8300998 ATAATATAGTTGTAAAT-GT-
1 ATAATTTAATAGTAAATAATG
** * *
8301017 ATAATAAAAATACTAAATCAAAG
1 ATAAT-TTAATAGTAAAT-AATG
* * **
8301040 ATAACTTAACAAAAAATAAGTG
1 ATAATTTAATAGTAAATAA-TG
* * *
8301062 ATAATTTAGTAGTTAATTATTG
1 ATAATTTAATAG-TAAATAATG
* * * *
8301084 ATAACTTAGTAATAAATTAATT
1 ATAATTTAATAGTAAA-TAATG
* * *
8301106 ATAACTTAATAGTAAATTAGTA
1 ATAATTTAATAGTAAA-TAATG
8301128 ATAATTTAATAGTAAAT
1 ATAATTTAATAGTAAAT
8301145 CAATTTCAGT
Statistics
Matches: 187, Mismatches: 56, Indels: 27
0.69 0.21 0.10
Matches are distributed among these distances:
19 5 0.03
20 9 0.05
21 24 0.13
22 134 0.72
23 15 0.08
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (21 bp):
ATAATTTAATAGTAAATAATG
Found at i:8300915 original size:44 final size:44
Alignment explanation
Indices: 8300867--8301144 Score: 136
Period size: 44 Copynumber: 6.4 Consensus size: 44
8300857 ATAATTGTCA
* * *
8300867 ATAATTTAATAGTAAATAAGTGATAATTTAATAGTAAATGAATG
1 ATAATTTAATAATAAATAAGTAATAATTTAATAGTAAATTAATG
* * * * *
8300911 ATAATTTAGTAATAAATAATTAATAACTTT-TTAGTAAATTAGTA
1 ATAATTTAATAATAAATAAGTAATAA-TTTAATAGTAAATTAATG
* * * ** * * *
8300955 ATAATATAATAATATATGA-TAATACCTTAATGGTAAATCAATT
1 ATAATTTAATAATAAATAAGTAATAATTTAATAGTAAATTAATG
* * ** ** * * *
8300998 ATAATATAGTTGTAAAT--GT-ATAATAAAAATACTAAATCAAAG
1 ATAATTTAATAATAAATAAGTAATAAT-TTAATAGTAAATTAATG
* * * * * * *
8301040 ATAACTTAACAAAAAATAAGTGATAATTTAGTAGTTAATTATTG
1 ATAATTTAATAATAAATAAGTAATAATTTAATAGTAAATTAATG
* * * * * *
8301084 ATAACTTAGTAATAAATTAA-TTATAACTTAATAGTAAATTAGTA
1 ATAATTTAATAATAAA-TAAGTAATAATTTAATAGTAAATTAATG
*
8301128 ATAATTTAATAGTAAAT
1 ATAATTTAATAATAAAT
8301145 CAATTTCAGT
Statistics
Matches: 168, Mismatches: 58, Indels: 17
0.69 0.24 0.07
Matches are distributed among these distances:
41 3 0.02
42 24 0.14
43 28 0.17
44 102 0.61
45 11 0.07
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (44 bp):
ATAATTTAATAATAAATAAGTAATAATTTAATAGTAAATTAATG
Found at i:8301219 original size:22 final size:22
Alignment explanation
Indices: 8301174--8301245 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
8301164 ATTAATTTAA
* *
8301174 AGTAGTAAATC-ATAAATTACTT
1 AGTAGTAAATCAAT-AATAAATT
8301196 AGTAGTAAATCAATAATAAATT
1 AGTAGTAAATCAATAATAAATT
* * *
8301218 AGCAGTAAAT-AATTGATAATTT
1 AGTAGTAAATCAA-TAATAAATT
8301240 AGTAGT
1 AGTAGT
8301246 TAATTATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
21 2 0.05
22 38 0.90
23 2 0.05
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (22 bp):
AGTAGTAAATCAATAATAAATT
Found at i:8301254 original size:22 final size:22
Alignment explanation
Indices: 8301194--8301255 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
8301184 CATAAATTAC
* *
8301194 TTAGTAGTAAATCAA-TAATAAA
1 TTAGCAGTAAAT-AATTGATAAA
*
8301216 TTAGCAGTAAATAATTGATAAT
1 TTAGCAGTAAATAATTGATAAA
* * *
8301238 TTAGTAGTTAATTATTGA
1 TTAGCAGTAAATAATTGA
8301256 AAACTTAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 2 0.06
22 31 0.94
ACGTcount: A:0.45, C:0.03, G:0.13, T:0.39
Consensus pattern (22 bp):
TTAGCAGTAAATAATTGATAAA
Found at i:8301474 original size:22 final size:20
Alignment explanation
Indices: 8301449--8301523 Score: 69
Period size: 22 Copynumber: 3.5 Consensus size: 20
8301439 ATAACTTAAC
8301449 AGTAAATTACTAATAATGTTAT
1 AGTAAATTA-TAATAAT-TTAT
*
8301471 AGTAAATTATGAATAACTTAAT
1 AGTAAATTAT-AATAA-TTTAT
*
8301493 TGTAAATTAATAATAATTTAGT
1 AGTAAATT-ATAATAATTTA-T
*
8301515 AATAAATTA
1 AGTAAATTA
8301524 GTTAATCATT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
21 5 0.11
22 36 0.82
23 3 0.07
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (20 bp):
AGTAAATTATAATAATTTAT
Found at i:8301498 original size:44 final size:44
Alignment explanation
Indices: 8301438--8301523 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
8301428 ATAGCAAATT
* *
8301438 AATAACTTAACAGTAAATTACTAATAATGTTA-TAGTAAATTATG
1 AATAACTTAACAGTAAATTAATAATAAT-TTAGTAATAAATTATG
**
8301482 AATAACTTAATTGTAAATTAATAATAATTTAGTAATAAATTA
1 AATAACTTAACAGTAAATTAATAATAATTTAGTAATAAATTA
8301524 GTTAATCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (44 bp):
AATAACTTAACAGTAAATTAATAATAATTTAGTAATAAATTATG
Found at i:8301586 original size:44 final size:44
Alignment explanation
Indices: 8301535--8301619 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
8301525 TTAATCATTG
* * * *
8301535 ATAACTTTTTAGTGAATCATCGATAAATTACTAGTAAATTAATT
1 ATAACTTTATAATAAATCATCAATAAATTACTAGTAAATTAATT
* *
8301579 ATAACTTTATAATAAATCATCAATAACTTAGTAGTAAATTA
1 ATAACTTTATAATAAATCATCAATAAATTACTAGTAAATTA
8301620 TCAAAATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (44 bp):
ATAACTTTATAATAAATCATCAATAAATTACTAGTAAATTAATT
Found at i:8301604 original size:22 final size:22
Alignment explanation
Indices: 8301579--8301635 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
8301569 TAAATTAATT
8301579 ATAACTTTATAATAAATCATCA
1 ATAACTTTATAATAAATCATCA
* *
8301601 ATAAC-TTAGTAGTAAATTATCA
1 ATAACTTTA-TAATAAATCATCA
8301623 A-AA-TTT-TAATAAA
1 ATAACTTTATAATAAA
8301636 AATAATTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
19 6 0.20
21 7 0.23
22 17 0.57
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.37
Consensus pattern (22 bp):
ATAACTTTATAATAAATCATCA
Found at i:8301663 original size:22 final size:22
Alignment explanation
Indices: 8301635--8301696 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
8301625 ATTTTAATAA
* *
8301635 AAATAATTTATAACTTAATGAT
1 AAATAATTCATAACTTAATGAC
*
8301657 AAATAATTCATAATTTAATGAC
1 AAATAATTCATAACTTAATGAC
* *
8301679 AAATCATTCATAAGTTAA
1 AAATAATTCATAACTTAA
8301697 AAAAAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (22 bp):
AAATAATTCATAACTTAATGAC
Found at i:8302188 original size:21 final size:23
Alignment explanation
Indices: 8302156--8302216 Score: 83
Period size: 21 Copynumber: 2.8 Consensus size: 23
8302146 TAAATTGATA
8302156 AATTTAGTAGTAAATTATA-AAT
1 AATTTAGTAGTAAATTATATAAT
*
8302178 AATTT-GTAGTAAATTA-ATGAT
1 AATTTAGTAGTAAATTATATAAT
*
8302199 AATTTAGTAGTTAATTAT
1 AATTTAGTAGTAAATTAT
8302217 TGAAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 15 0.44
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (23 bp):
AATTTAGTAGTAAATTATATAAT
Found at i:8302219 original size:66 final size:66
Alignment explanation
Indices: 8302061--8302221 Score: 168
Period size: 66 Copynumber: 2.4 Consensus size: 66
8302051 TCGATTAATA
*
8302061 AATGATAATTTAGTTA-TTAATTATTGAAAACTTAATAATAAATTAATAATAACTTAATCGTAAA
1 AATGATAATTTAG-TAGTTAATTATTGAAAACTTAATAATAAATTAATAATAACTTAATAGTAAA
8302125 TT
65 TT
** * * * * * **
8302127 AATTTTAGTTTAGTAG-TAATAAATTGATAAATTTAGTAGTAAATT-ATAAATAA-TTTGTAGTA
1 AATGATAATTTAGTAGTTAAT-TATTGA-AAACTTAATAATAAATTAAT-AATAACTTAATAGTA
8302189 AATT
63 AATT
8302193 AATGATAATTTAGTAGTTAATTATTGAAA
1 AATGATAATTTAGTAGTTAATTATTGAAA
8302222 TATAAAAGTA
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
65 8 0.11
66 45 0.59
67 23 0.30
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42
Consensus pattern (66 bp):
AATGATAATTTAGTAGTTAATTATTGAAAACTTAATAATAAATTAATAATAACTTAATAGTAAAT
T
Found at i:8302294 original size:15 final size:16
Alignment explanation
Indices: 8302263--8302296 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8302253 ATTGATCATT
*
8302263 AATAACTTAGTAGTTA
1 AATAACTTAATAGTTA
8302279 AATAACTTAATA-TTA
1 AATAACTTAATAGTTA
8302294 AAT
1 AAT
8302297 TATGGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (16 bp):
AATAACTTAATAGTTA
Found at i:8302485 original size:44 final size:44
Alignment explanation
Indices: 8302431--8302515 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
8302421 TTAATGCATA
* *
8302431 ATAACATAATAGTAAATCATTGATATTTTA-TATGTAAATTATTG
1 ATAACATAATAGTAAATCAATGATAATTTAGTA-GTAAATTATTG
* *
8302475 ATAACTTAATAGTATATCAATGATAATTTAGTAGTAAATTA
1 ATAACATAATAGTAAATCAATGATAATTTAGTAGTAAATTA
8302516 GTTAATCATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (44 bp):
ATAACATAATAGTAAATCAATGATAATTTAGTAGTAAATTATTG
Found at i:8302663 original size:22 final size:22
Alignment explanation
Indices: 8302638--8302683 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8302628 AAATTAATGC
*
8302638 TAATTTAGTAGTAAACCATTGA
1 TAATTTAGTAATAAACCATTGA
* *
8302660 TAATTTAGTAATATATCATTGA
1 TAATTTAGTAATAAACCATTGA
8302682 TA
1 TA
8302684 GTTAAATAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (22 bp):
TAATTTAGTAATAAACCATTGA
Found at i:8303114 original size:21 final size:21
Alignment explanation
Indices: 8303090--8303136 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8303080 AATGAGTATC
8303090 AAAATTGAATCAAAAGTTAAT
1 AAAATTGAATCAAAAGTTAAT
** *
8303111 AAAATTTTATCAAAAGTTATT
1 AAAATTGAATCAAAAGTTAAT
8303132 AAAAT
1 AAAAT
8303137 CAAAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (21 bp):
AAAATTGAATCAAAAGTTAAT
Found at i:8303141 original size:27 final size:27
Alignment explanation
Indices: 8303111--8303163 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8303101 AAAAGTTAAT
* *
8303111 AAAATTTTATCAAAAGTTATTAAAATC
1 AAAATTATATCAAAAGTTATCAAAATC
*
8303138 AAAATTATATCAAAATTTATCAAAAT
1 AAAATTATATCAAAAGTTATCAAAAT
8303164 TTACTTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (27 bp):
AAAATTATATCAAAAGTTATCAAAATC
Found at i:8303160 original size:10 final size:10
Alignment explanation
Indices: 8303135--8303166 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
8303125 AGTTATTAAA
8303135 ATCAAAATTAT
1 ATCAAAATT-T
8303146 ATCAAAATTT
1 ATCAAAATTT
8303156 ATCAAAATTT
1 ATCAAAATTT
8303166 A
1 A
8303167 CTTATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (10 bp):
ATCAAAATTT
Found at i:8311730 original size:27 final size:27
Alignment explanation
Indices: 8311700--8311755 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
8311690 TCGGTAGACC
*
8311700 TCATTAGCCTTCTACTTAATATTTTTT
1 TCATTAGCCTTCTACTTAATATTTCTT
8311727 TCATTAGCCTTCTACTTAATATTTCTT
1 TCATTAGCCTTCTACTTAATATTTCTT
8311754 TC
1 TC
8311756 TCTTTCACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.04, T:0.54
Consensus pattern (27 bp):
TCATTAGCCTTCTACTTAATATTTCTT
Found at i:8314573 original size:16 final size:16
Alignment explanation
Indices: 8314552--8314582 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8314542 TTAGGGTTTT
8314552 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8314568 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8314583 GTTTTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8314597 original size:20 final size:20
Alignment explanation
Indices: 8314568--8314607 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8314558 AGAGTTTGGA
* *
8314568 GATTTTAGGGTTTGGGTTTT
1 GATTTAAGGGTTTGGATTTT
8314588 GATTTAAGGGTTTGGATTTT
1 GATTTAAGGGTTTGGATTTT
8314608 AGGGATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.53
Consensus pattern (20 bp):
GATTTAAGGGTTTGGATTTT
Found at i:8314618 original size:36 final size:36
Alignment explanation
Indices: 8314539--8314611 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
8314529 GGATATGGAA
*
8314539 GGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAG
1 GGTTT-GGGTTTTGATTTAAGAGTTTGGAGATTTTAG
*
8314576 GGTTTGGGTTTTGATTTAAGGGTTT-G-GATTTTAG
1 GGTTTGGGTTTTGATTTAAGAGTTTGGAGATTTTAG
8314610 GG
1 GG
8314612 ATTTTGGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 10 0.29
35 1 0.03
36 18 0.53
37 5 0.15
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (36 bp):
GGTTTGGGTTTTGATTTAAGAGTTTGGAGATTTTAG
Found at i:8314619 original size:16 final size:15
Alignment explanation
Indices: 8314581--8314688 Score: 130
Period size: 16 Copynumber: 7.1 Consensus size: 15
8314571 TTTAGGGTTT
*
8314581 GGGTTTT-GATTTAA
1 GGGTTTTGGATTTTA
8314595 GGG-TTTGGATTTTA
1 GGGTTTTGGATTTTA
8314609 GGGATTTTGGATTTTA
1 GGG-TTTTGGATTTTA
8314625 GGGTTTTGGATTTTA
1 GGGTTTTGGATTTTA
8314640 GAGGTTTTGGATTTTA
1 G-GGTTTTGGATTTTA
*
8314656 GGGATTGTGGATTTTAA
1 GGG-TTTTGGATTTT-A
**
8314673 GGGTTTCAGATTTTA
1 GGGTTTTGGATTTTA
8314688 G
1 G
8314689 AATTTGGATT
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
13 3 0.04
14 12 0.14
15 17 0.20
16 47 0.57
17 4 0.05
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (15 bp):
GGGTTTTGGATTTTA
Found at i:8314636 original size:31 final size:30
Alignment explanation
Indices: 8314581--8314688 Score: 130
Period size: 31 Copynumber: 3.5 Consensus size: 30
8314571 TTTAGGGTTT
*
8314581 GGGTTTT-GATTTAAGGG-TTTGGATTTTA
1 GGGTTTTGGATTTTAGGGTTTTGGATTTTA
8314609 GGGATTTTGGATTTTAGGGTTTTGGATTTTA
1 GGG-TTTTGGATTTTAGGGTTTTGGATTTTA
*
8314640 GAGGTTTTGGATTTTAGGGATTGTGGATTTTAA
1 G-GGTTTTGGATTTTAGGG-TTTTGGATTTT-A
**
8314673 GGGTTTCAGATTTTAG
1 GGGTTTTGGATTTTAG
8314689 AATTTGGATT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
28 3 0.04
29 4 0.06
30 9 0.13
31 27 0.39
32 25 0.36
33 2 0.03
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (30 bp):
GGGTTTTGGATTTTAGGGTTTTGGATTTTA
Found at i:8314659 original size:47 final size:47
Alignment explanation
Indices: 8314581--8314689 Score: 152
Period size: 47 Copynumber: 2.3 Consensus size: 47
8314571 TTTAGGGTTT
*
8314581 GGGTTTTGA-TTTA-AGGGTTTGGATTTTAGGGATTTTGGATTTT-A
1 GGGTTTTGATTTTAGAGGGTTTGGATTTTAGGGATTGTGGATTTTAA
*
8314625 GGGTTTTGGATTTTAGAGGTTTTGGATTTTAGGGATTGTGGATTTTAA
1 GGGTTTT-GATTTTAGAGGGTTTGGATTTTAGGGATTGTGGATTTTAA
*
8314673 GGGTTTCAGATTTTAGA
1 GGGTTT-TGATTTTAGA
8314690 ATTTGGATTT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
44 7 0.12
45 2 0.04
46 4 0.07
47 28 0.49
48 16 0.28
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (47 bp):
GGGTTTTGATTTTAGAGGGTTTGGATTTTAGGGATTGTGGATTTTAA
Found at i:8315987 original size:10 final size:10
Alignment explanation
Indices: 8315972--8316000 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8315962 AAAAATTCCA
8315972 AGGTGGCTGT
1 AGGTGGCTGT
8315982 AGGTGGCTGT
1 AGGTGGCTGT
8315992 AGGTGGCTG
1 AGGTGGCTG
8316001 CAGGCTGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.10, G:0.52, T:0.28
Consensus pattern (10 bp):
AGGTGGCTGT
Found at i:8316181 original size:12 final size:12
Alignment explanation
Indices: 8316166--8316196 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8316156 ATTTTTTTAA
8316166 ATTATTATGGTT
1 ATTATTATGGTT
*
8316178 ATTATTATTGTT
1 ATTATTATGGTT
8316190 ATTATTA
1 ATTATTA
8316197 AAATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (12 bp):
ATTATTATGGTT
Found at i:8316439 original size:23 final size:23
Alignment explanation
Indices: 8316413--8316470 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
8316403 TATCCGGAGA
8316413 TCTTATAGAATCACACCCGAAAG
1 TCTTATAGAATCACACCCGAAAG
* * * *
8316436 TCTTACAGAATCATACCCGGAGG
1 TCTTATAGAATCACACCCGAAAG
*
8316459 TCTTATAAAATC
1 TCTTATAGAATC
8316471 GACCAAGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (23 bp):
TCTTATAGAATCACACCCGAAAG
Found at i:8316600 original size:88 final size:88
Alignment explanation
Indices: 8316488--8316723 Score: 364
Period size: 88 Copynumber: 2.7 Consensus size: 88
8316478 ATAACACCAT
* * * * *
8316488 AAGTCAAAAGATAAAGAATTGATCGGGATAACACCGCAAATCAAAATTATACCCGGAGGTCACAC
1 AAGTCGAAAGATAAGGAATCGATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCACAC
*
8316553 AGAATCGACTGGGATAACATCTC
66 AAAATCGACTGGGATAACATCTC
* * * *
8316576 AAGTCGAAAGATAAGGAATCGATCGGGATAACATCGCGAATCGAAATTATGCCCGAAGGTCATAC
1 AAGTCGAAAGATAAGGAATCGATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCACAC
8316641 AAAATCGACTGGGATAACATCTC
66 AAAATCGACTGGGATAACATCTC
* *
8316664 AAGTCGAAAGATAAGGAATCGATCGGGATAACACCGCGAATCAAAATTATGCCTGAAGGT
1 AAGTCGAAAGATAAGGAATCGATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGT
8316724 TTTAGAAATC
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 135 1.00
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (88 bp):
AAGTCGAAAGATAAGGAATCGATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCACAC
AAAATCGACTGGGATAACATCTC
Found at i:8316770 original size:20 final size:21
Alignment explanation
Indices: 8316737--8316777 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
8316727 AGAAATCATG
8316737 TCCGGAGATCTTACAGAATTA
1 TCCGGAGATCTTACAGAATTA
8316758 TCCGGAG-TCTTACAGAATTA
1 TCCGGAGATCTTACAGAATTA
8316778 CCCAGGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (21 bp):
TCCGGAGATCTTACAGAATTA
Found at i:8316982 original size:22 final size:23
Alignment explanation
Indices: 8316957--8317006 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
8316947 ATTTATGCTT
8316957 GGAGGACATA-AAAATCATGCCC
1 GGAGGACATACAAAATCATGCCC
* * *
8316979 GGAGGTCTTACAAAATTATGCCC
1 GGAGGACATACAAAATCATGCCC
8317002 GGAGG
1 GGAGG
8317007 TCTTACAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.18
Consensus pattern (23 bp):
GGAGGACATACAAAATCATGCCC
Found at i:8316987 original size:110 final size:109
Alignment explanation
Indices: 8316782--8316988 Score: 261
Period size: 110 Copynumber: 1.9 Consensus size: 109
8316772 GAATTACCCA
* * **
8316782 GGATAACACCATAAGTCAAAAATAAATAATTGATCGGGACAACACCGCGAATCAAAATTATACCT
1 GGATAACACCACAAGTCAAAAATAAAGAATCAATCGGGACAACACCGCGAATCAAAATTATACCT
* * *
8316847 GGAAGTCTTAGAAATCATGCCCGGAGGTCTTATAGAATTGACTG
66 GGAAGACATAAAAATCATGCCCGGAGGTCTTATAGAATTGACTG
* * * * * * * *
8316891 GGATAACACCACAAGTCGAAAGATAAAGAATCAATTGGGATAACACCGTGAATTAAATTTATGCT
1 GGATAACACCACAAGTC-AAAAATAAAGAATCAATCGGGACAACACCGCGAATCAAAATTATACC
*
8316956 TGGAGGACATAAAAATCATGCCCGGAGGTCTTA
65 TGGAAGACATAAAAATCATGCCCGGAGGTCTTA
8316989 CAAAATTATG
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
109 16 0.20
110 65 0.80
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (109 bp):
GGATAACACCACAAGTCAAAAATAAAGAATCAATCGGGACAACACCGCGAATCAAAATTATACCT
GGAAGACATAAAAATCATGCCCGGAGGTCTTATAGAATTGACTG
Found at i:8316993 original size:23 final size:23
Alignment explanation
Indices: 8316967--8317018 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
8316957 GGAGGACATA
8316967 AAAATCATGCCCGGAGGTCTTAC
1 AAAATCATGCCCGGAGGTCTTAC
*
8316990 AAAATTATGCCCGGAGGTCTTAC
1 AAAATCATGCCCGGAGGTCTTAC
*
8317013 AGAATC
1 AAAATC
8317019 GATTGGGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (23 bp):
AAAATCATGCCCGGAGGTCTTAC
Found at i:8317105 original size:133 final size:133
Alignment explanation
Indices: 8316858--8317266 Score: 507
Period size: 133 Copynumber: 3.1 Consensus size: 133
8316848 GAAGTCTTAG
* *
8316858 AAATCATGCCCGGAGGTCTTATAGAATTGACTGGGATAACACCACAAGTCGAAAGATAAAGAATC
1 AAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCACAAGTCGAAAGATAAAGAATC
* * * * * * * *
8316923 AATTGGGATAACACCGTGAATTAAATTTATGCTTGGAGGACATAAAAATCATGCCCGGAGGTCTT
66 GATCGAGATAACACCGTGAATCAAATTTATGCCTGGAGGTCTTAAAAATCATGCCCGAAGGTCTT
8316988 ACA
131 ACA
* * *
8316991 AAATTATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGTC-AAGAGATAAAGAAT
1 AAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCACAAGTCGAA-AGATAAAGAAT
* * *
8317055 CGATCGAGATAACACCGCGAATCAAATTTATGCCCGGAGGTCTTACAAATCATGCCCGAAGGTCT
65 CGATCGAGATAACACCGTGAATCAAATTTATGCCTGGAGGTCTTAAAAATCATGCCCGAAGGTCT
8317120 TACA
130 TACA
* *** *
8317124 GAATCATTTTCGGAGGTCTTACAGAATTGACTT-GGATAACACCACCAGTCGAAAGATAAAGAAT
1 AAATCATGCCCGGAGGTCTTACAGAATTGA-TTGGGATAACACCACAAGTCGAAAGATAAAGAAT
* * * * * * * * *
8317188 TGATCGAGATAATATCGTGAATCAAAATTATGCCTGAAAGTCTTAGAAATCATGCCCAAAAGTCT
65 CGATCGAGATAACACCGTGAATCAAATTTATGCCTGGAGGTCTTAAAAATCATGCCCGAAGGTCT
8317253 TACA
130 TACA
*
8317257 GAATCATGCC
1 AAATCATGCC
8317267 TAAAAAATCG
Statistics
Matches: 235, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
132 2 0.01
133 229 0.97
134 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (133 bp):
AAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAACACCACAAGTCGAAAGATAAAGAATC
GATCGAGATAACACCGTGAATCAAATTTATGCCTGGAGGTCTTAAAAATCATGCCCGAAGGTCTT
ACA
Found at i:8317140 original size:23 final size:23
Alignment explanation
Indices: 8317084--8317150 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
8317074 AATCAAATTT
8317084 ATGCCCGGAGGTCTTACA-AATC
1 ATGCCCGGAGGTCTTACAGAATC
*
8317106 ATGCCCGAAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
***
8317129 ATTTTCGGAGGTCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
8317151 TGACTTGGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 17 0.44
23 22 0.56
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAGAATC
Found at i:8317242 original size:22 final size:22
Alignment explanation
Indices: 8317212--8317271 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
8317202 TCGTGAATCA
* * *
8317212 AAATTATGCCTGAAAGTCTTAG
1 AAATCATGCCTAAAAGTCTTAC
*
8317234 AAATCATGCCCAAAAGTCTTAC
1 AAATCATGCCTAAAAGTCTTAC
8317256 AGAATCATGCCTAAAA
1 A-AATCATGCCTAAAA
8317272 AATCGATCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 19 0.59
23 13 0.41
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (22 bp):
AAATCATGCCTAAAAGTCTTAC
Found at i:8317265 original size:23 final size:22
Alignment explanation
Indices: 8317224--8317271 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
8317214 ATTATGCCTG
*
8317224 AAAGTCTTAGAAATCATGCCCA
1 AAAGTCTTACAAATCATGCCCA
*
8317246 AAAGTCTTACAGAATCATGCCTA
1 AAAGTCTTACA-AATCATGCCCA
8317269 AAA
1 AAA
8317272 AATCGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (22 bp):
AAAGTCTTACAAATCATGCCCA
Found at i:8317329 original size:22 final size:23
Alignment explanation
Indices: 8317297--8317353 Score: 89
Period size: 22 Copynumber: 2.5 Consensus size: 23
8317287 CACTGCGAAT
*
8317297 CGAAATTATGCCCGAAGGTCTTA
1 CGAAATCATGCCCGAAGGTCTTA
8317320 -GAAATCATGCCCGAAGGTCTTA
1 CGAAATCATGCCCGAAGGTCTTA
*
8317342 CAAAATCATGCC
1 CGAAATCATGCC
8317354 TAAAGAATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 21 0.68
23 10 0.32
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (23 bp):
CGAAATCATGCCCGAAGGTCTTA
Found at i:8317340 original size:87 final size:87
Alignment explanation
Indices: 8317206--8317406 Score: 303
Period size: 87 Copynumber: 2.3 Consensus size: 87
8317196 ATAATATCGT
* * *
8317206 GAATCAAAATTATGCCTGAAAGTCTTAGAAATCATGCCCAAAAGTCTTACAGAATCATGCCTAAA
1 GAATCAAAATTATGCCCGAAGGTCTTAGAAATCATGCCCAAAAGTCTTACAAAATCATGCCTAAA
*
8317271 AAATCGATCGGGATAACACTGC
66 AAATCGATCGGGATAACACCGC
* * *
8317293 GAATCGAAATTATGCCCGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACAAAATCATGCCTAAA
1 GAATCAAAATTATGCCCGAAGGTCTTAGAAATCATGCCCAAAAGTCTTACAAAATCATGCCTAAA
*
8317358 GAATCGATCGGGATAACACCGC
66 AAATCGATCGGGATAACACCGC
* * *
8317380 GAATTAAAATTATGCTCGGAGGTCTTA
1 GAATCAAAATTATGCCCGAAGGTCTTA
8317407 CAGAATCGAC
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 102 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (87 bp):
GAATCAAAATTATGCCCGAAGGTCTTAGAAATCATGCCCAAAAGTCTTACAAAATCATGCCTAAA
AAATCGATCGGGATAACACCGC
Found at i:8317587 original size:110 final size:110
Alignment explanation
Indices: 8317385--8317633 Score: 306
Period size: 110 Copynumber: 2.3 Consensus size: 110
8317375 ACCGCGAATT
* ** *
8317385 AAAATTATGCTCGGAGGTCTTACAGAATCGACTGGGATAACACCGTAAGTTAAAAAATAAGAAAT
1 AAAATCATGCTCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAGTCAAAAAATAAGAAAT
* * *
8317450 CGATTAAGATAACATCGTAAATTGAATTTATGCCC-AGAGGTCTTA
66 CGATCAAGATAACATCGCAAATCGAATTTATGCCCGA-AGGTCTTA
* * *
8317495 AAAATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAGAGATAA-ACAA
1 AAAATCATGCTCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAGTCAAAAAATAAGA-AA
** * *
8317559 TCGATCGGGATAATATCGCGAATCGAATTTATGCCCGAAGGTCTTA
65 TCGATCAAGATAACATCGCAAATCGAATTTATGCCCGAAGGTCTTA
* *
8317605 GAAATCATG-TCCGAAGGTCTTACAGAATC
1 AAAATCATGCT-CGGAGGTCTTACAGAATC
8317634 ATGCTCGAAG
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
109 2 0.02
110 117 0.98
111 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (110 bp):
AAAATCATGCTCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAGTCAAAAAATAAGAAAT
CGATCAAGATAACATCGCAAATCGAATTTATGCCCGAAGGTCTTA
Found at i:8317642 original size:23 final size:22
Alignment explanation
Indices: 8317589--8317653 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 22
8317579 AATCGAATTT
* *
8317589 ATGCCCGAAGGTCTTAGAAATC
1 ATGCTCGAAGGTCTTACAAATC
8317611 ATG-TCCGAAGGTCTTACAGAATC
1 ATGCT-CGAAGGTCTTACA-AATC
8317634 ATGCTCGAAGGTCTTACAAA
1 ATGCTCGAAGGTCTTACAAA
8317654 ATCGATTGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 17 0.45
23 20 0.53
24 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (22 bp):
ATGCTCGAAGGTCTTACAAATC
Found at i:8317706 original size:243 final size:243
Alignment explanation
Indices: 8317391--8317847 Score: 625
Period size: 243 Copynumber: 1.9 Consensus size: 243
8317381 AATTAAAATT
* * ** *
8317391 ATGCTCGGAGGTCTTACAGAATCGACTGGGATAACACCGTAAGTTAAAAAATAAGAAATCGATTA
1 ATGCTCGAAGGTCTTACAAAATCGACTGGGATAACACCACAAGTTAAAAAATAAGAAATCGATCA
** * * * *
8317456 AGATAACATCGTAAATTGAATTTATGCCCAG-AGGTCTTAAAAATCATGCTCGGAGGTCTTACAG
66 AGATAACATCACAAATCGAATTTATG-CCAGAAGGTCTTAAAAATCATGCCCGAAGGTCTTACAA
* * * * *
8317520 AATCGATTGGGATAACACCACAAGTCAAGAGATAAACAATCGATCGGGATAATATCGCGAATCGA
130 AATCGATTGGGATAACACCACAAGTCAAAAGATAAACAATCGATCGAGATAACATCACGAATCAA
8317585 ATTTATGCCC-GAAGGTCTTAGAAATCATGTCCGAAGGTCTTACAGAATC
195 ATTTATGCCCAG-AGGTCTTAGAAATCATGTCCGAAGGTCTTACAGAATC
* *
8317634 ATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAA-TTCAAAAGATAA-AGAATCGAT
1 ATGCTCGAAGGTCTTACAAAATCGACTGGGATAACACCACAAGTT-AAAAAATAAGA-AATCGAT
* * * * * *
8317697 CAGGATAACATCACAAATCGAATTTATGCCTGAAGGTTTTAGAAATCATGCCCGAAGTTCTTATA
64 CAAGATAACATCACAAATCGAATTTATGCCAGAAGGTCTTAAAAATCATGCCCGAAGGTCTTACA
*
8317762 AAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACATCACGAATCA
129 AAATCGATTGGGATAACACCACAAGTCAAAAGATAAACAATCGATCGAGATAACATCACGAATCA
8317827 AATTTATGCCCAGAGGTCTTA
194 AATTTATGCCCAGAGGTCTTA
8317848 CAGAATCAAC
Statistics
Matches: 185, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
242 6 0.03
243 178 0.96
244 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (243 bp):
ATGCTCGAAGGTCTTACAAAATCGACTGGGATAACACCACAAGTTAAAAAATAAGAAATCGATCA
AGATAACATCACAAATCGAATTTATGCCAGAAGGTCTTAAAAATCATGCCCGAAGGTCTTACAAA
ATCGATTGGGATAACACCACAAGTCAAAAGATAAACAATCGATCGAGATAACATCACGAATCAAA
TTTATGCCCAGAGGTCTTAGAAATCATGTCCGAAGGTCTTACAGAATC
Found at i:8317739 original size:133 final size:132
Alignment explanation
Indices: 8317479--8317766 Score: 416
Period size: 133 Copynumber: 2.2 Consensus size: 132
8317469 AATTGAATTT
* *
8317479 ATGCCC-AGAGGTCTTAAAAATCATGCTCGGAGGTCTTACAGAATCGATTGGGATAACACCACAA
1 ATGCCCGA-AGGTCTTAAAAATCATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAA
* * * * *
8317543 GTCAAGAGATAAACAATCGATCGGGATAATATCGCGAATCGAATTTATGCCCGAAGGTCTTAGAA
65 GTCAAAAGATAAACAATCGATCAGGATAACATCACAAATCGAATTTATGCCCGAAGGTCTTAGAA
8317608 ATC
130 ATC
* *
8317611 ATGTCCGAAGGTCTTACAGAATCATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAA
1 ATGCCCGAAGGTCTTA-AAAATCATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAA
* * * *
8317676 TTCAAAAGATAAAGAATCGATCAGGATAACATCACAAATCGAATTTATGCCTGAAGGTTTTAGAA
65 GTCAAAAGATAAACAATCGATCAGGATAACATCACAAATCGAATTTATGCCCGAAGGTCTTAGAA
8317741 ATC
130 ATC
*
8317744 ATGCCCGAAGTTCTTATAAAATC
1 ATGCCCGAAGGTCTTA-AAAATC
8317767 GATTGGGATA
Statistics
Matches: 137, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 13 0.09
133 124 0.91
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (132 bp):
ATGCCCGAAGGTCTTAAAAATCATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAAG
TCAAAAGATAAACAATCGATCAGGATAACATCACAAATCGAATTTATGCCCGAAGGTCTTAGAAA
TC
Found at i:8317772 original size:110 final size:110
Alignment explanation
Indices: 8317630--8317836 Score: 344
Period size: 110 Copynumber: 1.9 Consensus size: 110
8317620 GGTCTTACAG
* *
8317630 AATCATGCTCGAAGGTCTTACAAAATCGATTGGGATAACACCACAATTCAAAAGATAAAGAATCG
1 AATCATGCCCGAAGGTCTTACAAAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
*
8317695 ATC-AGGATAACATCACAAATCGAATTTATGCCTGAAGGTTTTAGA
66 ATCGA-GATAACATCACAAATCAAATTTATGCCTGAAGGTTTTAGA
* *
8317740 AATCATGCCCGAAGTTCTTATAAAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
1 AATCATGCCCGAAGGTCTTACAAAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
*
8317805 ATCGAGATAACATCACGAATCAAATTTATGCC
66 ATCGAGATAACATCACAAATCAAATTTATGCC
8317837 CAGAGGTCTT
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
110 89 0.99
111 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (110 bp):
AATCATGCCCGAAGGTCTTACAAAATCGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCG
ATCGAGATAACATCACAAATCAAATTTATGCCTGAAGGTTTTAGA
Found at i:8317862 original size:88 final size:87
Alignment explanation
Indices: 8317770--8318029 Score: 394
Period size: 88 Copynumber: 3.0 Consensus size: 87
8317760 TAAAATCGAT
*
8317770 TGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGAGATAACATCACGAATCAAATTTATG
1 TGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCAAATTTATG
8317835 CCCAGAGGTCTTACAGAATCAAC
66 CCCAGAGGTCTTACA-AATCAAC
* * * *
8317858 TGGGATAACACCACAAGTCAAAAGATAAAGAATCAATCGGGATAACACCGCGAATCGAATTTATG
1 TGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCAAATTTATG
* * *
8317923 CTCGGAGGTCTTACAAAATCGAC
66 CCCAGAGGTCTTAC-AAATCAAC
* * * *
8317946 TGAGATAACACCACAAGTTAAAAGATAAAGAATTGATCGGGATAACATCACAAATCAAATTTATG
1 TGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCAAATTTATG
8318011 CCCAGAGGTCTTACAAATC
66 CCCAGAGGTCTTACAAATC
8318030 TCAAAATCTT
Statistics
Matches: 153, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
87 5 0.03
88 147 0.96
89 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (87 bp):
TGGGATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCAAATTTATG
CCCAGAGGTCTTACAAATCAAC
Found at i:8318164 original size:122 final size:122
Alignment explanation
Indices: 8318006--8318339 Score: 517
Period size: 122 Copynumber: 2.7 Consensus size: 122
8317996 CAAATCAAAT
8318006 TTATGCCC-AGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAA
1 TTATGCCCGA-AGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAA
* * *
8318070 ACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTGTGTAGAGGCTTTTAGAAA
65 ACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTGCGCAGAGACTTTTAGAAA
** * * *
8318128 TTATGCTTGAAGGTCTTACAAATCTCAAAATCTTTGAATGCTCATCATAATCAGAGGTAATAAAA
1 TTATGCCCGAAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAAA
* * *
8318193 CTTTAAAAATTTGAAAATCTTTTAATCTTGAAAGTCTTGCGCAGAGACTTTTAGAGA
66 CTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTGCGCAGAGACTTTTAGAAA
* * *
8318250 TTATGCCCGGAGGTCTTACAAATTTTAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAAA
1 TTATGCCCGAAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAAA
*
8318315 CTTTAAAAATTTTAAAATCTTTTAA
66 CTTTAAAAATTTAAAAATCTTTTAA
8318340 AATATGGCTT
Statistics
Matches: 191, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
122 190 0.99
123 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (122 bp):
TTATGCCCGAAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAAA
CTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTGCGCAGAGACTTTTAGAAA
Found at i:8318441 original size:41 final size:41
Alignment explanation
Indices: 8318388--8318495 Score: 159
Period size: 41 Copynumber: 2.6 Consensus size: 41
8318378 AAGATCTTTT
8318388 TTGATGAA-GGTTCC-CTCTAAACAGAGGCTTTGAAATCTTGA
1 TTGA-GAATGGTTCCTCT-TAAACAGAGGCTTTGAAATCTTGA
*
8318429 TTGA-AATTGGTTCCTCTTAAATAGAGGCTTTGAAATCTTGA
1 TTGAGAA-TGGTTCCTCTTAAACAGAGGCTTTGAAATCTTGA
8318470 TTGAGAATGGTTCCTCTTAAACAGAG
1 TTGAGAATGGTTCCTCTTAAACAGAG
8318496 AATTTAAAAC
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
39 2 0.03
41 55 0.90
42 4 0.07
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (41 bp):
TTGAGAATGGTTCCTCTTAAACAGAGGCTTTGAAATCTTGA
Found at i:8320230 original size:7 final size:7
Alignment explanation
Indices: 8320211--8320247 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
8320201 ATATGTCCAA
8320211 TTTTGTT
1 TTTTGTT
8320218 TTTT-TT
1 TTTTGTT
*
8320224 TTAT-TT
1 TTTTGTT
8320230 TTTTGTT
1 TTTTGTT
8320237 TTTTGTT
1 TTTTGTT
8320244 TTTT
1 TTTT
8320248 TTTATGCCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 10 0.37
7 17 0.63
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (7 bp):
TTTTGTT
Found at i:8320235 original size:19 final size:19
Alignment explanation
Indices: 8320211--8320250 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
8320201 ATATGTCCAA
8320211 TTTTGTTTTTT-TTTTATTT
1 TTTTGTTTTTTGTTTT-TTT
8320230 TTTTGTTTTTTGTTTTTTT
1 TTTTGTTTTTTGTTTTTTT
8320249 TT
1 TT
8320251 ATGCCTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (19 bp):
TTTTGTTTTTTGTTTTTTT
Found at i:8320845 original size:18 final size:18
Alignment explanation
Indices: 8320811--8320844 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8320801 CAAAGATAAC
*
8320811 TTTTTTTCTCTTTTTTTA
1 TTTTTTTATCTTTTTTTA
8320829 TTTTTTTAT-TTTTTTT
1 TTTTTTTATCTTTTTTT
8320845 TGAAAGTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTTTTTATCTTTTTTTA
Found at i:8326834 original size:16 final size:16
Alignment explanation
Indices: 8326815--8326845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8326805 TTAGGGTTTT
8326815 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8326831 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8326846 GTTTTAAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8326856 original size:14 final size:15
Alignment explanation
Indices: 8326833--8326865 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8326823 AGTTTGGAGA
*
8326833 TTTTAGGGTTT-GGG
1 TTTTAAGGTTTGGGG
8326847 TTTTAAGGTTTGGGG
1 TTTTAAGGTTTGGGG
8326862 TTTT
1 TTTT
8326866 GATTTAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.09, C:0.00, G:0.36, T:0.55
Consensus pattern (15 bp):
TTTTAAGGTTTGGGG
Found at i:8326885 original size:20 final size:20
Alignment explanation
Indices: 8326848--8326885 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8326838 GGGTTTGGGT
*
8326848 TTTAAGGTTTGGGGTTTTGA
1 TTTAAGGTTTGGGATTTTGA
8326868 TTTAAGGGTTT-GGATTTT
1 TTTAA-GGTTTGGGATTTT
8326886 AGGGATTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.53
Consensus pattern (20 bp):
TTTAAGGTTTGGGATTTTGA
Found at i:8326916 original size:16 final size:15
Alignment explanation
Indices: 8326859--8326973 Score: 117
Period size: 16 Copynumber: 7.5 Consensus size: 15
8326849 TTAAGGTTTG
*
8326859 GGGTTTT-GATTTAA
1 GGGTTTTGGATTTTA
8326873 GGG-TTTGGATTTTA
1 GGGTTTTGGATTTTA
**
8326887 GGGATTTTGTTTTTTA
1 GGG-TTTTGGATTTTA
8326903 GGGTTTTGGATTTTAA
1 GGGTTTTGGATTTT-A
*
8326919 AGGTTTTGGATTTTA
1 GGGTTTTGGATTTTA
* *
8326934 GAGGGTTTGGATTTAA
1 G-GGTTTTGGATTTTA
8326950 GGGATTTTGGATTTTA
1 GGG-TTTTGGATTTTA
8326966 GGGGTTTT
1 -GGGTTTT
8326974 AGAAACTTAG
Statistics
Matches: 83, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
13 3 0.04
14 12 0.14
15 12 0.14
16 53 0.64
17 3 0.04
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.50
Consensus pattern (15 bp):
GGGTTTTGGATTTTA
Found at i:8327420 original size:12 final size:12
Alignment explanation
Indices: 8327382--8327420 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
8327372 AAGTATACTT
8327382 AAAATAATAAAA
1 AAAATAATAAAA
* *
8327394 ATAATAATATAA
1 AAAATAATAAAA
8327406 AAAATAA-AAAA
1 AAAATAATAAAA
8327417 AAAA
1 AAAA
8327421 CATTTTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
11 7 0.30
12 16 0.70
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATAATAAAA
Found at i:8328081 original size:19 final size:20
Alignment explanation
Indices: 8328057--8328094 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8328047 AAGACTATGT
8328057 TGTTTTTG-GTTTTTGTTTC
1 TGTTTTTGCGTTTTTGTTTC
8328076 TGTTTTTGCGTTTTTGTTT
1 TGTTTTTGCGTTTTTGTTT
8328095 TGGGTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.00, C:0.05, G:0.21, T:0.74
Consensus pattern (20 bp):
TGTTTTTGCGTTTTTGTTTC
Found at i:8328410 original size:9 final size:8
Alignment explanation
Indices: 8328356--8328413 Score: 55
Period size: 8 Copynumber: 7.0 Consensus size: 8
8328346 TACTTTCTGT
8328356 TTTTTTTA
1 TTTTTTTA
8328364 -TTTTTTA
1 TTTTTTTA
8328371 TTTTTTTA
1 TTTTTTTA
***
8328379 TTTATAGAA
1 TTT-TTTTA
8328388 TTAATTTTTA
1 TT--TTTTTA
8328398 TTTTTTTA
1 TTTTTTTA
8328406 TTTTTTTA
1 TTTTTTTA
8328414 ATTATTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
7 7 0.17
8 24 0.60
9 4 0.10
10 4 0.10
11 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.78
Consensus pattern (8 bp):
TTTTTTTA
Found at i:8333439 original size:30 final size:31
Alignment explanation
Indices: 8333393--8333459 Score: 86
Period size: 29 Copynumber: 2.2 Consensus size: 31
8333383 GGACAACCAA
8333393 CCAAAACCCAAACAAGTTATCCA-ACAAAAAAT
1 CCAAAACCCAAACAAGTTAT-CAGA-AAAAAAT
*
8333425 CCAAAA-CC-AACAAGTTATCAGAAAAAAGT
1 CCAAAACCCAAACAAGTTATCAGAAAAAAAT
8333454 CCAAAA
1 CCAAAA
8333460 GCAATAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
29 14 0.42
30 11 0.33
31 2 0.06
32 6 0.18
ACGTcount: A:0.57, C:0.25, G:0.06, T:0.12
Consensus pattern (31 bp):
CCAAAACCCAAACAAGTTATCAGAAAAAAAT
Found at i:8334625 original size:19 final size:19
Alignment explanation
Indices: 8334580--8334628 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
8334570 CCTTTAAATA
8334580 TAAAAATATTTTAAATTTT
1 TAAAAATATTTTAAATTTT
* **
8334599 TAACAAATTTTTTAGTTTTT
1 TAA-AAATATTTTAAATTTT
8334619 TAAAAATATT
1 TAAAAATATT
8334629 AAATTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TAAAAATATTTTAAATTTT
Found at i:8334757 original size:34 final size:34
Alignment explanation
Indices: 8334718--8334793 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
8334708 TAATTTTATT
* *
8334718 ATTTTTAATTTTTATAAAATTTTTATAGTATTTA
1 ATTTTTAATTTTTAGAAAATTTTTATAATATTTA
* * *
8334752 ATTTTTTATTTTTAGAACATTTTTATAATATTTT
1 ATTTTTAATTTTTAGAAAATTTTTATAATATTTA
8334786 ATATTTTA
1 AT-TTTTA
8334794 GAAAGAGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (34 bp):
ATTTTTAATTTTTAGAAAATTTTTATAATATTTA
Found at i:8336123 original size:9 final size:9
Alignment explanation
Indices: 8336109--8336138 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8336099 GATATTTTAT
8336109 TAATTAAAA
1 TAATTAAAA
8336118 TAATTAAAA
1 TAATTAAAA
8336127 TATATTAAAA
1 TA-ATTAAAA
8336137 TA
1 TA
8336139 TAAAAGCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:8336135 original size:10 final size:10
Alignment explanation
Indices: 8336111--8336140 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8336101 TATTTTATTA
8336111 ATTAAAATA-
1 ATTAAAATAT
8336120 ATTAAAATAT
1 ATTAAAATAT
8336130 ATTAAAATAT
1 ATTAAAATAT
8336140 A
1 A
8336141 AAAGCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:8336930 original size:2 final size:2
Alignment explanation
Indices: 8336925--8336949 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8336915 ATTATGTTCG
8336925 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8336950 CTTCATGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8342214 original size:56 final size:57
Alignment explanation
Indices: 8342111--8342393 Score: 272
Period size: 59 Copynumber: 4.9 Consensus size: 57
8342101 TTGTGCAGGA
* * * *
8342111 AAAATTGATACTTTCAACTTTTTCTC-AAACATTTTTTAGAAATTTTAATCTCGAGG
1 AAAATTGATACTTTCAACTTTTTCCCAAAATATTTTTTAGAAACTTTAATTTCGAGG
* *
8342167 AAAATTGATACTTTCAACTTTTTCCCAAAATATCTTTT-GAAACTTTAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTTCCCAAAATATTTTTTAGAAACTTTAATTTCGAGG
* * * * **
8342223 AAAATTGATACTTTCAA-TTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCC-C-AAAA-TATTTTTTAGAAACTTTAATTTCGAGG
* * *
8342282 AAAATTGATACTTTCAA-TTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAG
1 AAAATTGATACTTTCAACTTTTTC-CC-AAAATA-TTTTTTAGAAACTTTAATTTCGAGG
* * * * *
8342341 AAAATTAATACTTACAAC-TTTTCCTCAAAA-ACTTTTTTTGAAAATTTACTTTC
1 AAAATTGATACTTTCAACTTTTTCC-CAAAATA-TTTTTTAGAAACTTTAATTTC
8342394 AATTTTTCTC
Statistics
Matches: 192, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
55 7 0.04
56 58 0.30
57 31 0.16
58 12 0.06
59 83 0.43
60 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTTCCCAAAATATTTTTTAGAAACTTTAATTTCGAGG
Found at i:8342365 original size:118 final size:113
Alignment explanation
Indices: 8342111--8342388 Score: 335
Period size: 118 Copynumber: 2.4 Consensus size: 113
8342101 TTGTGCAGGA
* * * * * * * * **
8342111 AAAATTGATACTTTCAACTTTTTCTCAAACA-TTTTTTAGAAATTTTAATCTCGAGGAAAATTGA
1 AAAATTAATACTTACAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
* * *
8342175 TACTTTCAACTTTTTCCCAAAATATCTTTTGAAACTTTAATTTTGAGG
66 TACTTTCAACTTTTTCCCAAAATATCTTTTGAAACCTTAATTTCGAAG
* * *
8342223 AAAATTGATACTTTCAATTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATT
1 AAAATTAATACTTACAACTTTTCCTCAAAAAC--TTTTTTTGAAAATTTATTTTTAAGGAAAATT
*
8342288 GATACTTTCAA-TTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAG
64 GATACTTTCAACTTTTTC-CC-AAAATA-TCTTTT-GAAACCTTAATTTCGAAG
8342341 AAAATTAATACTTACAACTTTTCCTCAAAAACTTTTTTTGAAAATTTA
1 AAAATTAATACTTACAACTTTTCCTCAAAAACTTTTTTTGAAAATTTA
8342389 CTTTCAATTT
Statistics
Matches: 143, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
112 28 0.20
114 6 0.04
115 38 0.27
116 22 0.15
117 5 0.03
118 44 0.31
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (113 bp):
AAAATTAATACTTACAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTTCCCAAAATATCTTTTGAAACCTTAATTTCGAAG
Found at i:8342396 original size:97 final size:98
Alignment explanation
Indices: 8342281--8342468 Score: 351
Period size: 97 Copynumber: 1.9 Consensus size: 98
8342271 TATTTTTAAG
8342281 GAAAATTGATACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAGAAAAT
1 GAAAATT-ATACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAGAAAAT
8342346 TAATACTTACAACTTTTCCTCAAAAACTTTTTTT
65 TAATACTTACAACTTTTCCTCAAAAACTTTTTTT
*
8342380 GAAAATT-TACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAATT
1 GAAAATTATACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAGAAAATT
8342444 AATACTTACAACTTTTCCTCAAAAA
66 AATACTTACAACTTTTCCTCAAAAA
8342469 TCGTTTTAAA
Statistics
Matches: 88, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
97 81 0.92
99 7 0.08
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.41
Consensus pattern (98 bp):
GAAAATTATACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAAGAAAATT
AATACTTACAACTTTTCCTCAAAAACTTTTTTT
Found at i:8342401 original size:38 final size:40
Alignment explanation
Indices: 8342340--8342419 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 40
8342330 TAATTTCGAA
*
8342340 GAAAATTAATACTTACAACTTTTC-CTCAAAAA-CTTTTTTT
1 GAAAATT-ATACTTACAACTTTTCTC-CAAAAATATTTTTTT
* *
8342380 GAAAATT-TACTTTCAATTTTTCTCCAAAAATATTTTTTT
1 GAAAATTATACTTACAACTTTTCTCCAAAAATATTTTTTT
8342419 G
1 G
8342420 GAAACCTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
38 19 0.54
39 9 0.26
40 7 0.20
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (40 bp):
GAAAATTATACTTACAACTTTTCTCCAAAAATATTTTTTT
Found at i:8342566 original size:57 final size:57
Alignment explanation
Indices: 8342438--8342765 Score: 353
Period size: 57 Copynumber: 5.7 Consensus size: 57
8342428 AATTTCGAGG
* * ****
8342438 AAAATTAATACTTACAACTTTTCCTCAAAAATCGTTTTAAAAAAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-C-TTTTTTTGAAAA-TTTATTTTTAAGA
*
8342498 AAAATTCATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGA
8342555 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TCTTTTTTGAAAATTTATTTTTAA-A
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAAGA
* * ** * * ** *
8342611 GAAAATTGATACTTTCAACTTTT-TTCCAAAAA-TATTTTTTGGGAACCTCAATTTCGAGG
1 -AAAATTGATACTTTCAACTTTTCCT-CAAAAACT-TTTTTT-GAAAATTTATTTTTAAGA
* *
8342670 AAAATTGATCCTTTTAACTTTTCCTCAAAAAC-TTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGA
* *
8342726 AAAATTTATACTTTCAACTTTTCC-CAAAAATATTTTTTTG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTG
8342766 GATTTTATTT
Statistics
Matches: 227, Mismatches: 32, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
55 6 0.03
56 34 0.15
57 113 0.50
58 43 0.19
59 2 0.01
60 29 0.13
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGA
Found at i:8342641 original size:114 final size:114
Alignment explanation
Indices: 8342381--8342767 Score: 480
Period size: 114 Copynumber: 3.4 Consensus size: 114
8342371 ACTTTTTTTG
* *
8342381 AAAATT-TACTTTCAATTTTTCTCCAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAATTA
1 AAAATTATACTTTCAACTTTTC-CCAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAATTG
* ***
8342445 ATACTTACAACTTTTCCTCAAAAATCGTTTTAAAAAAAATTTTATTTTTAAGA
65 ATACTTTCAACTTTTCCTCAAAAATC-TTTT-TTGAAAA-TTTATTTTTAAGA
* ** * ** *
8342498 AAAATTCATACTTTCAACTTTTCCTCAAAAA-CTTTTTTT-GAAAATTTATTTTTAAGAAAAATT
1 AAAATT-ATACTTTCAACTTTTCC-CAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAATT
8342561 GATACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAATTTATTTTTAA-A
64 GATACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAATTTATTTTTAAGA
* * *
8342611 GAAAATTGATACTTTCAACTTTTTTCCAAAAATA-TTTTTTGGGAACCTCAATTTCGAGGAAAAT
1 -AAAATT-ATACTTTCAAC-TTTTCCCAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAAT
* *
8342675 TGATCCTTTTAACTTTTCCTCAAAAA-CTTTTTTGAAAATTTATTTTTAAGA
63 TGATACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAATTTATTTTTAAGA
8342726 AAAATTTATACTTTCAACTTTTCCCAAAAATATTTTTTTGGA
1 AAAA-TTATACTTTCAACTTTTCCCAAAAATATTTTTTTGGA
8342768 TTTTATTTAA
Statistics
Matches: 232, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
113 14 0.06
114 86 0.37
115 51 0.22
116 4 0.02
117 49 0.21
118 8 0.03
119 20 0.09
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (114 bp):
AAAATTATACTTTCAACTTTTCCCAAAAATATTTTTTTGGAAACCTTAATTTCGAGGAAAATTGA
TACTTTCAACTTTTCCTCAAAAATCTTTTTTGAAAATTTATTTTTAAGA
Found at i:8342839 original size:26 final size:25
Alignment explanation
Indices: 8342780--8342869 Score: 85
Period size: 26 Copynumber: 3.6 Consensus size: 25
8342770 TTATTTAAAG
* *
8342780 AAAATAAAATAATAAAAC-AAAATA
1 AAAATAAAAAAAGAAAACAAAAATA
* * * *
8342804 AAAGTGAAAATA-AAAATAAACAATA
1 AAAATAAAAAAAGAAAACAAA-AATA
8342829 AAAATAAAAAAAGTAAAACAAAAATA
1 AAAATAAAAAAAG-AAAACAAAAATA
8342855 AAAATAAAATAAAGA
1 AAAATAAAA-AAAGA
8342870 TAAAAATATA
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 13 0.25
26 14 0.27
27 11 0.21
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.14
Consensus pattern (25 bp):
AAAATAAAAAAAGAAAACAAAAATA
Found at i:8342846 original size:7 final size:6
Alignment explanation
Indices: 8342780--8342877 Score: 85
Period size: 6 Copynumber: 16.0 Consensus size: 6
8342770 TTATTTAAAG
* *
8342780 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAATA AAAATA AACAATA
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA AA-AATA
* * *
8342829 AAAATA AAAAAA GTAAAACA AAAATA AAAAT- AAAATA AAGATA AAAATA
1 AAAATA AAAATA --AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
8342878 TATTAAATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
5 10 0.13
6 50 0.66
7 11 0.14
8 5 0.07
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:8342862 original size:17 final size:17
Alignment explanation
Indices: 8342780--8342877 Score: 85
Period size: 17 Copynumber: 5.7 Consensus size: 17
8342770 TTATTTAAAG
8342780 AAAATAAAATAATAAAAC-
1 AAAAT-AAA-AATAAAACA
* *
8342798 AAAATAAAAGTGAAAATA
1 AAAATAAAAAT-AAAACA
8342816 AAAATAAACAATAAAA-A
1 AAAATAAA-AATAAAACA
* *
8342833 TAAA-AAAAGTAAAACA
1 AAAATAAAAATAAAACA
*
8342849 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAACA
*
8342866 AAGATAAAAATA
1 AAAATAAAAATA
8342878 TATTAAATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.09
16 9 0.14
17 32 0.48
18 17 0.26
19 2 0.03
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (17 bp):
AAAATAAAAATAAAACA
Found at i:8342864 original size:50 final size:48
Alignment explanation
Indices: 8342780--8342877 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 48
8342770 TTATTTAAAG
* *
8342780 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAAAAATAAACAATA
1 AAAATAAAAAAATAAAACAAAATAAAAATGAAAATAAAAATAAA-AATA
*
8342829 AAAATAAAAAAAGTAAAACAAAAATAAAAAT-AAAATAAAGATAAAAATA
1 AAAATAAAAAAA-TAAAAC-AAAATAAAAATGAAAATAAAAATAAAAATA
8342878 TATTAAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 15 0.34
50 19 0.43
51 10 0.23
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (48 bp):
AAAATAAAAAAATAAAACAAAATAAAAATGAAAATAAAAATAAAAATA
Found at i:8342923 original size:21 final size:22
Alignment explanation
Indices: 8342891--8342932 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8342881 TAAATAAACC
*
8342891 TAATCTAATAA-TAATAAAAAT
1 TAATCTAATAATTAAAAAAAAT
8342912 TAAT-TAATTAATTAAAAAAAA
1 TAATCTAA-TAATTAAAAAAAA
8342933 ACCTGGAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 3 0.17
21 7 0.39
22 8 0.44
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
TAATCTAATAATTAAAAAAAAT
Found at i:8343774 original size:22 final size:20
Alignment explanation
Indices: 8343758--8343809 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
8343748 GAAAATAAAT
8343758 CAGATAAATCAAAAAAATTAA
1 CAGATAAATCAAAAAAA-TAA
*
8343779 CAGATAAATTAAAATTAAATAA
1 CAGATAAATCAAAA--AAATAA
8343801 CAGATAAAT
1 CAGATAAAT
8343810 TATAACATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 13 0.46
22 12 0.43
23 3 0.11
ACGTcount: A:0.63, C:0.08, G:0.06, T:0.23
Consensus pattern (20 bp):
CAGATAAATCAAAAAAATAA
Found at i:8343789 original size:12 final size:12
Alignment explanation
Indices: 8343772--8343811 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
8343762 TAAATCAAAA
8343772 AAATTAACAGAT
1 AAATTAACAGAT
8343784 AAATTAA-A-ATT
1 AAATTAACAGA-T
8343795 AAA-TAACAGAT
1 AAATTAACAGAT
8343806 AAATTA
1 AAATTA
8343812 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:8343810 original size:22 final size:21
Alignment explanation
Indices: 8343749--8343811 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
8343739 AATATTAATG
* *
8343749 AAAATAAATCAGATAAATCAAA
1 AAAATTAA-CAGATAAATTAAA
8343771 AAAATTAACAGATAAATTAAA
1 AAAATTAACAGATAAATTAAA
8343792 ATTAAA-TAACAGATAAATTA
1 A--AAATTAACAGATAAATTA
8343812 TAACATATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.35
22 21 0.57
23 3 0.08
ACGTcount: A:0.65, C:0.06, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAATTAACAGATAAATTAAA
Found at i:8343943 original size:11 final size:10
Alignment explanation
Indices: 8343927--8344015 Score: 61
Period size: 11 Copynumber: 8.0 Consensus size: 10
8343917 AAATAAATAC
8343927 ATAAAAGAAAA
1 ATAAAA-AAAA
8343938 ATAAAAGAAAA
1 ATAAAA-AAAA
*
8343949 ATATATATAAAA
1 ATA-A-AAAAAA
* *
8343961 ACAATAATAATA
1 ATAA-AA-AAAA
8343973 ATAGAAATAAAA
1 ATA-AAA-AAAA
*
8343985 ATAAAATAAA
1 ATAAAAAAAA
8343995 ATACAAAAAAA
1 ATA-AAAAAAA
8344006 ATAAAAAAAA
1 ATAAAAAAAA
8344016 TAGACTTACC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
10 13 0.20
11 29 0.45
12 21 0.32
13 2 0.03
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (10 bp):
ATAAAAAAAA
Found at i:8344006 original size:16 final size:16
Alignment explanation
Indices: 8343935--8344015 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 16
8343925 ACATAAAAGA
*
8343935 AAAATAAAAGAAAAAT
1 AAAATAAAATAAAAAT
*
8343951 ATATATAAAA-ACAATAAT
1 A-AAATAAAATA-AA-AAT
8343969 AATAATAGAAATAAAAAT
1 AA-AATA-AAATAAAAAT
8343987 AAAATAAAATACAAAA-
1 AAAATAAAATA-AAAAT
8344003 AAAATAAAA-AAAA
1 AAAATAAAATAAAA
8344016 TAGACTTACC
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
14 3 0.05
15 1 0.02
16 16 0.29
17 18 0.32
18 12 0.21
19 5 0.09
20 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:8344017 original size:36 final size:37
Alignment explanation
Indices: 8343915--8344017 Score: 97
Period size: 36 Copynumber: 2.9 Consensus size: 37
8343905 ATAGTAATGA
* * *
8343915 ATAAAT-AAATACATAAAAGAA-AAATAAAAGAAAAAT
1 ATAAATAAAATACA-AAAAAAATAAAAAAAATAAAAAT
* * * * *
8343951 ATATATAAAA-ACAATAATAATAATAGAAATAAAAAT
1 ATAAATAAAATACAAAAAAAATAAAAAAAATAAAAAT
8343987 A-AAATAAAATACAAAAAAAATAAAAAAAATA
1 ATAAATAAAATACAAAAAAAATAAAAAAAATA
8344018 GACTTACCTA
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
35 12 0.23
36 37 0.71
37 3 0.06
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (37 bp):
ATAAATAAAATACAAAAAAAATAAAAAAAATAAAAAT
Found at i:8344018 original size:42 final size:41
Alignment explanation
Indices: 8343936--8344019 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 41
8343926 CATAAAAGAA
* * * * *
8343936 AAATAAAAGAAAAATATATATAAAAACAATAATAATAATAG
1 AAATAAAAGAAAAATAAATACAAAAAAAATAAAAAAAATAG
8343977 AAATAAAA-ATAAAATAAAATACAAAAAAAATAAAAAAAATAG
1 AAATAAAAGA-AAAAT-AAATACAAAAAAAATAAAAAAAATAG
8344019 A
1 A
8344020 CTTACCTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
40 1 0.03
41 13 0.36
42 22 0.61
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (41 bp):
AAATAAAAGAAAAATAAATACAAAAAAAATAAAAAAAATAG
Found at i:8344364 original size:41 final size:42
Alignment explanation
Indices: 8344192--8344363 Score: 229
Period size: 42 Copynumber: 4.1 Consensus size: 42
8344182 TTGATCAAAA
* *
8344192 CTCCTCGAAGCAGAGGCTCAACGACTTTGGAAAAATAAATGG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATGG
* *
8344234 CTCCTCTAATCAGAGGCTCAAAGACTTTGAAAAAATAAATGG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATGG
* *
8344276 CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAACAAATTG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATGG
* * * * * *
8344318 CTCCTTTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATGG
8344359 CTCCT
1 CTCCT
8344364 TGACAATCAT
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
41 16 0.14
42 100 0.86
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
CTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATGG
Found at i:8345392 original size:9 final size:9
Alignment explanation
Indices: 8345380--8345421 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
8345370 TTTTTCCTCT
8345380 TTTTTTTCA
1 TTTTTTTCA
8345389 TTTTTTT-A
1 TTTTTTTCA
8345397 TTTTTTT-A
1 TTTTTTTCA
*
8345405 -ATTTTTCA
1 TTTTTTTCA
8345413 TTTTTTTCA
1 TTTTTTTCA
8345422 AGCATAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 5 0.17
8 10 0.34
9 14 0.48
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:8356032 original size:58 final size:57
Alignment explanation
Indices: 8355798--8356297 Score: 481
Period size: 58 Copynumber: 8.7 Consensus size: 57
8355788 TTTTGTGCAG
* * * * *
8355798 GAAAAATTGATACTTTCAA-TTTTTCTCCAAAATATTTTTTAGAAATTTTAATCTCGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-GAAAATTTAATTTCAA
* * * * * *
8355855 GGAAAATTTATACTTTCAATTTTTTCC-C-AAAATATCTTTTGAAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAA-CTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCAA
* * * * *
8355911 G-AAAATTGATACTTTCAACTTTTTCTCAAAAACTTTTTTTTTCAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAAATTTAATTTCAA
* ** *
8355969 -AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACCTTAATTTCGA
1 GA-AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTT-GAAAATTTAATTTCAA
* *** * * *
8356028 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATCGTTTTAAAAAAAATTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTGAAAATTTAATTTCAA
* * * * *
8356086 GAAAAATTGATACTTTCAAGTTTTCCTCAAAAATCTTTTTTGAATATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCAA
* * * ** *
8356143 GAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTGGGAACCTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-GAAAATTTAATTTCAA
* * * * *
8356201 GGAAAATTGATACTTTCAACTTTTTCTCAAAAA-CTTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCAA
*
8356257 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
8356298 TTGGATTTTA
Statistics
Matches: 363, Mismatches: 66, Indels: 28
0.79 0.14 0.06
Matches are distributed among these distances:
54 5 0.01
55 17 0.05
56 59 0.16
57 95 0.26
58 107 0.29
59 79 0.22
60 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (57 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCAA
Found at i:8356300 original size:173 final size:173
Alignment explanation
Indices: 8355798--8356318 Score: 646
Period size: 173 Copynumber: 3.0 Consensus size: 173
8355788 TTTTGTGCAG
* * ** *
8355798 GAAAAATTGATACTTTCAA-TTTTTCTCCAAAATATTTTTTAGAAATTTTAATCTCGAGGAAAAT
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACCTTAATTTCGAGGAAAAT
* * * * * * **
8355862 TTATACTTTCAATTTTTTCCCAAAATA-TCTTTTGAAACTTTAATTTCGAG-AAAATTGATACTT
66 TGATACTTTCAACTTTTTCTCAAAA-ACTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTT
* * *
8355925 TCAACTTTTTCTCAAAAACT-TTTTTTTTCAAAATTTATTTTTAA
130 TCAACTTTTCCTCAAAAA-TATTTTTTTTGAATATTTATTTTTAA
* * *
8355969 -AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACCTTAATTTCGAGAAAA
1 GA-AAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTGGAAACCTTAATTTCGAGGAAA
* *** *
8356033 ATTGATACTTTCAACTTTTCCTCAAAAATCGTTTTAAAAAAAATTATTTTTAAGAAAAATTGATA
64 ATTGATACTTTCAACTTTTTCTCAAAAA-C-TTTTTTGAAAATTTATTTTTAAGAAAAATTGATA
* *
8356098 CTTTCAAGTTTTCCTC-AAAA-ATCTTTTTTGAATATTTATTTTTAA
127 CTTTCAACTTTTCCTCAAAAATATTTTTTTTGAATATTTATTTTTAA
* *
8356143 GAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTGGGAACCTTAATTTCGAGGAAAAT
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACCTTAATTTCGAGGAAAAT
8356208 TGATACTTTCAACTTTTTCTCAAAAACTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTTT
66 TGATACTTTCAACTTTTTCTCAAAAACTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTTT
* * *
8356273 CAACTTTTCCCCAAAAATATTTTTTTTGGAT-TTTA-TTTAAA
131 CAACTTTTCCTCAAAAATATTTTTTTTGAATATTTATTTTTAA
8356314 GAAAA
1 GAAAA
8356319 TAAAATAATA
Statistics
Matches: 298, Mismatches: 41, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
170 1 0.00
171 71 0.24
172 22 0.07
173 110 0.37
174 51 0.17
175 19 0.06
176 24 0.08
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.44
Consensus pattern (173 bp):
GAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACCTTAATTTCGAGGAAAAT
TGATACTTTCAACTTTTTCTCAAAAACTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTTT
CAACTTTTCCTCAAAAATATTTTTTTTGAATATTTATTTTTAA
Found at i:8356323 original size:5 final size:5
Alignment explanation
Indices: 8356315--8356416 Score: 56
Period size: 5 Copynumber: 20.2 Consensus size: 5
8356305 TTATTTAAAG
*
8356315 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AATAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AA-AAT
* *
8356359 AAAAT -AAA- AAAAT AAAGA- AAAGT AAAACA AAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAA-AT AAAAT AAAA-T AAAAT -AAAAT AAAAT
8356404 AAAGATT AAAAT A
1 AAA-A-T AAAAT A
8356417 TATTAAATAA
Statistics
Matches: 77, Mismatches: 6, Indels: 28
0.69 0.05 0.25
Matches are distributed among these distances:
3 3 0.04
4 10 0.13
5 42 0.55
6 14 0.18
7 8 0.10
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8356330 original size:8 final size:7
Alignment explanation
Indices: 8356315--8356374 Score: 52
Period size: 7 Copynumber: 8.1 Consensus size: 7
8356305 TTATTTAAAG
8356315 AAAATAA
1 AAAATAA
8356322 AATAATAA
1 AA-AATAA
8356330 AACAA-AA
1 AA-AATAA
*
8356337 TAAAAGT-G
1 -AAAA-TAA
8356345 AAAATAA
1 AAAATAA
8356352 AAAATAA
1 AAAATAA
8356359 AAAATAAA
1 AAAAT-AA
8356367 AAAATAA
1 AAAATAA
8356374 A
1 A
8356375 GAAAAGTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
6 1 0.02
7 25 0.57
8 18 0.41
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:8356360 original size:12 final size:12
Alignment explanation
Indices: 8356315--8356416 Score: 65
Period size: 11 Copynumber: 8.9 Consensus size: 12
8356305 TTATTTAAAG
8356315 AAAATAAAATAA
1 AAAATAAAATAA
*
8356327 TAAAACAAAAT-A
1 -AAAATAAAATAA
*
8356339 AAAGTGAAAATAA
1 AAAAT-AAAATAA
8356352 AAAATAAAA-AA
1 AAAATAAAATAA
*
8356363 TAAA-AAAAT-A
1 AAAATAAAATAA
* *
8356373 AAGA-AAAGTAA
1 AAAATAAAATAA
*
8356384 AACA-AAAAT-A
1 AAAATAAAATAA
8356394 AAAATAAAATAA
1 AAAATAAAATAA
* *
8356406 AGATTAAAATA
1 AAAATAAAATA
8356417 TATTAAATAA
Statistics
Matches: 70, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
10 15 0.21
11 21 0.30
12 20 0.29
13 14 0.20
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:8356385 original size:32 final size:31
Alignment explanation
Indices: 8356315--8356408 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 31
8356305 TTATTTAAAG
8356315 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAA
1 AAAATAAAA-AAT-AAA-AAAAT-AAA--GAAAATAA
8356352 AAAATAAAAAATAAAAAAATAAAGAAAAGTAA
1 AAAATAAAAAATAAAAAAATAAAGAAAA-TAA
*
8356384 AACAA-AAATAAA-AATAAAATAAAGA
1 AA-AATAAA-AAATAAAAAAATAAAGA
8356409 TTAAAATATA
Statistics
Matches: 53, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
31 5 0.09
32 20 0.38
33 8 0.15
34 5 0.09
35 3 0.06
36 3 0.06
37 9 0.17
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (31 bp):
AAAATAAAAAATAAAAAAATAAAGAAAATAA
Found at i:8356385 original size:44 final size:42
Alignment explanation
Indices: 8356315--8356402 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 42
8356305 TTATTTAAAG
* **
8356315 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAAAAAATAA
1 AAAATAAAAAAATAAAACAAAATAAAA-CAAAAAT-AAAAATAA
*
8356359 AAAATAAAAAAATAAAGA-AAAGTAAAACAAAAATAAAAATAA
1 AAAATAAAAAAATAAA-ACAAAATAAAACAAAAATAAAAATAA
8356401 AA
1 AA
8356403 TAAAGATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 10 0.26
43 5 0.13
44 23 0.59
45 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (42 bp):
AAAATAAAAAAATAAAACAAAATAAAACAAAAATAAAAATAA
Found at i:8356391 original size:36 final size:37
Alignment explanation
Indices: 8356315--8356402 Score: 103
Period size: 37 Copynumber: 2.4 Consensus size: 37
8356305 TTATTTAAAG
* *
8356315 AAAATAAAATAAT-AAAACAAAATAAAAGTGAAAATAA
1 AAAATAAAA-AATAAAAAAAAAAGAAAAGTGAAAATAA
*
8356352 AAAATAAAAAATAAAAAAATAAAGAAAAGT-AAAA-CA
1 AAAATAAAAAATAAAAAAA-AAAGAAAAGTGAAAATAA
8356388 AAAAT-AAAAATAAAA
1 AAAATAAAAAATAAAA
8356403 TAAAGATTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 10 0.22
36 9 0.20
37 18 0.39
38 9 0.20
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (37 bp):
AAAATAAAAAATAAAAAAAAAAGAAAAGTGAAAATAA
Found at i:8358140 original size:41 final size:41
Alignment explanation
Indices: 8358095--8358176 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
8358085 CAAAACTCGA
*
8358095 AACAGATTATGTCAGACAAAAAGAGGTCTAATTAAGTTGGT
1 AACAGATTATGTCAGACAAAAAGAAGTCTAATTAAGTTGGT
8358136 AACAGATTATGTCAGACAAAAAGAAGTCTAATTAAGTTGGT
1 AACAGATTATGTCAGACAAAAAGAAGTCTAATTAAGTTGGT
8358177 TTAACTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.27
Consensus pattern (41 bp):
AACAGATTATGTCAGACAAAAAGAAGTCTAATTAAGTTGGT
Found at i:8358717 original size:28 final size:28
Alignment explanation
Indices: 8358679--8358739 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
8358669 ATTATTGTGA
8358679 TTTAAAAATTTTGTTAC-AATTTTTTTAT
1 TTTAAAAA-TTTGTTACAAATTTTTTTAT
8358707 TTTAAAAATTTGTTACAAATTTTTTTAT
1 TTTAAAAATTTGTTACAAATTTTTTTAT
8358735 TTTAA
1 TTTAA
8358740 TGATTTGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (28 bp):
TTTAAAAATTTGTTACAAATTTTTTTAT
Found at i:8358754 original size:28 final size:28
Alignment explanation
Indices: 8358679--8358755 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
8358669 ATTATTGTGA
*
8358679 TTTAAAAATTTTGTTAC-AATTTTTTTAT
1 TTTAAAAA-TTTGTAACAAATTTTTTTAT
*
8358707 TTTAAAAATTTGTTACAAATTTTTTTAT
1 TTTAAAAATTTGTAACAAATTTTTTTAT
** *
8358735 TTTAATGATTTGTAATAAATT
1 TTTAAAAATTTGTAACAAATT
8358756 GTGATTGGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.18
28 36 0.82
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (28 bp):
TTTAAAAATTTGTAACAAATTTTTTTAT
Found at i:8364898 original size:20 final size:20
Alignment explanation
Indices: 8364873--8364914 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8364863 TTTTTATAAC
8364873 TTATTGAT-AAAAAAATTTAA
1 TTATTGATGAAAAAAA-TTAA
*
8364893 TTATTGATGAATAAAATTAA
1 TTATTGATGAAAAAAATTAA
8364913 TT
1 TT
8364915 TTTATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TTATTGATGAAAAAAATTAA
Found at i:8366191 original size:7 final size:7
Alignment explanation
Indices: 8366179--8366246 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
8366169 CTTCATTCTC
8366179 TATTTTT
1 TATTTTT
8366186 TATTTTT
1 TATTTTT
*
8366193 T-TATTT
1 TATTTTT
8366199 TATTTTT
1 TATTTTT
8366206 TATTTAATT
1 TATTT--TT
*
8366215 TATCTTT
1 TATTTTT
*
8366222 TATCTTT
1 TATTTTT
*
8366229 TGTTTTT
1 TATTTTT
*
8366236 TGTTTTT
1 TATTTTT
8366243 TATT
1 TATT
8366247 AATTTTAGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
6 5 0.10
7 41 0.79
9 6 0.12
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (7 bp):
TATTTTT
Found at i:8366201 original size:13 final size:13
Alignment explanation
Indices: 8366183--8366215 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8366173 ATTCTCTATT
8366183 TTTTATTTTTTTA
1 TTTTATTTTTTTA
8366196 TTTTA-TTTTTTA
1 TTTTATTTTTTTA
*
8366208 TTTAATTT
1 TTTTATTT
8366216 ATCTTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:8366988 original size:15 final size:16
Alignment explanation
Indices: 8366968--8367006 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
8366958 TTAAAATAGT
*
8366968 AATATTTGT-TATTAA
1 AATATTTGTAAATTAA
8366983 AATATTTGTACAATTAA
1 AATATTTGTA-AATTAA
8367000 AATATTT
1 AATATTT
8367007 ATATTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (16 bp):
AATATTTGTAAATTAA
Found at i:8367219 original size:42 final size:43
Alignment explanation
Indices: 8367170--8367272 Score: 124
Period size: 42 Copynumber: 2.4 Consensus size: 43
8367160 TATTAAGAAA
8367170 ATAATATTATTATATTATTTAACATTAATTATTTAAATAATAA-
1 ATAATATTATTATATTATTTAACATTAATTA-TTAAATAATAAT
** **
8367213 A-AATATTATTATA-TATTTTATTATTTGTTATTAAATAATAAT
1 ATAATATTATTATATTA-TTTAACATTAATTATTAAATAATAAT
8367255 ATAATATTATT-TATTATT
1 ATAATATTATTATATTATT
8367273 GAAATATTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
41 13 0.25
42 27 0.52
43 12 0.23
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (43 bp):
ATAATATTATTATATTATTTAACATTAATTATTAAATAATAAT
Found at i:8367397 original size:18 final size:20
Alignment explanation
Indices: 8367376--8367412 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8367366 TTTTATAAAA
8367376 ATTAA-ATAA-AATATTTTT
1 ATTAAGATAATAATATTTTT
8367394 ATTAAGATAATAATATTTT
1 ATTAAGATAATAATATTTT
8367413 AAGTCAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
ATTAAGATAATAATATTTTT
Found at i:8371871 original size:19 final size:20
Alignment explanation
Indices: 8371835--8371872 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8371825 GCTCGAATGT
* *
8371835 AATTTAAATTATTTATTTTA
1 AATTTAAATTAGTAATTTTA
8371855 AATTT-AATTAGTAATTTT
1 AATTTAAATTAGTAATTTT
8371873 TTTTGGTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
AATTTAAATTAGTAATTTTA
Found at i:8373710 original size:22 final size:22
Alignment explanation
Indices: 8373685--8373911 Score: 158
Period size: 22 Copynumber: 10.4 Consensus size: 22
8373675 ATATTATGTC
**
8373685 ATCAATGATTTACTACTAAGCT
1 ATCAATGATTTACTACTAAATT
*
8373707 ATCAATGATATACTACTAAATT
1 ATCAATGATTTACTACTAAATT
* **
8373729 ATTAGCGATTTACTACTAAATT
1 ATCAATGATTTACTACTAAATT
* * * * *
8373751 AGCATTAATTTATTACT-ATTT
1 ATCAATGATTTACTACTAAATT
* * *
8373772 ATGAATGACTTACTCCTAAATT
1 ATCAATGATTTACTACTAAATT
* *
8373794 ATGAATGATTTACTTCTAAATT
1 ATCAATGATTTACTACTAAATT
** * **
8373816 ATTGATGATTTACTATTATGTT
1 ATCAATGATTTACTACTAAATT
* *
8373838 A-CTGATGATTTATTA-TAAAGTT
1 ATC-AATGATTTACTACTAAA-TT
* *
8373860 AT-AATTGATTTACTATTAATTT
1 ATCAA-TGATTTACTACTAAATT
8373882 ATCAATGATTTACTAC-AAAGTT
1 ATCAATGATTTACTACTAAA-TT
8373904 ATCAATGA
1 ATCAATGA
8373912 ATAACTATTT
Statistics
Matches: 158, Mismatches: 39, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
21 18 0.11
22 135 0.85
23 5 0.03
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (22 bp):
ATCAATGATTTACTACTAAATT
Found at i:8373945 original size:22 final size:22
Alignment explanation
Indices: 8373920--8374014 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 22
8373910 GAATAACTAT
* *
8373920 TTTACTACTAAATTATTATTGA
1 TTTACTACTAAATTATTAATAA
8373942 TTTA-TAACTAAATTATTAATAA
1 TTTACT-ACTAAATTATTAATAA
* *
8373964 TTTACTACTAAACTATCAATAA
1 TTTACTACTAAATTATTAATAA
* * * *
8373986 TTTGC-ATCTAAACTATCAATGA
1 TTTACTA-CTAAATTATTAATAA
8374008 TTTACTA
1 TTTACTA
8374015 TTATGTTATT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.03
22 58 0.94
23 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43
Consensus pattern (22 bp):
TTTACTACTAAATTATTAATAA
Found at i:8374343 original size:22 final size:22
Alignment explanation
Indices: 8374318--8374369 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
8374308 GTTATCACTA
*
8374318 ATTTACTATTAAAATATCATTG
1 ATTTACTATTAAAATATCAATG
**
8374340 ATTT-CTTATTAAGTTATCAATG
1 ATTTAC-TATTAAAATATCAATG
*
8374362 ATTAACTA
1 ATTTACTA
8374370 CCAAGTTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (22 bp):
ATTTACTATTAAAATATCAATG
Found at i:8374813 original size:22 final size:22
Alignment explanation
Indices: 8374770--8374813 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8374760 TTATGAATGC
* *
8374770 TTTCCATTAAATTATTGGTGAT
1 TTTCCACTAAATTATTGATGAT
* *
8374792 TTTCCACTAAGTTGTTGATGAT
1 TTTCCACTAAATTATTGATGAT
8374814 AATTATAAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.48
Consensus pattern (22 bp):
TTTCCACTAAATTATTGATGAT
Found at i:8374943 original size:22 final size:22
Alignment explanation
Indices: 8374918--8375294 Score: 145
Period size: 22 Copynumber: 17.4 Consensus size: 22
8374908 TATATAACTA
**
8374918 ATTTACTATTACGTTATTAATG
1 ATTTACTATTAAATTATTAATG
*
8374940 ATTTATTATTAAATTATT-A--
1 ATTTACTATTAAATTATTAATG
* *
8374959 ATTTATTATTAAATTATCAATG
1 ATTTACTATTAAATTATTAATG
* *
8374981 ATTTACTATGATATT-TGTATAT-
1 ATTTACTATTAAATTAT-TA-ATG
* * *
8375003 ATTTACTATTATATTATCATTG
1 ATTTACTATTAAATTATTAATG
** *
8375025 ATTTACTACTT-AATT-TTCTTTT
1 ATTTACTA-TTAAATTATT-AATG
** *
8375047 ATTTACTACAAAATTATTACTG
1 ATTTACTATTAAATTATTAATG
* *
8375069 ATTTA-TGACTAAATTATCT-ATA
1 ATTTACT-ATTAAATTAT-TAATG
* *
8375091 ATTTATTATTAAGTTATT-ATAG
1 ATTTACTATTAAATTATTAAT-G
8375113 ATTTA-TATTAAATTA-TACATG
1 ATTTACTATTAAATTATTA-ATG
* * ** *
8375134 ATTTATTAATAAATTAGCACTG
1 ATTTACTATTAAATTATTAATG
* **
8375156 ATTAACTATTATGTTATTGAAT-
1 ATTTACTATTAAATTATT-AATG
* **
8375178 ATTTACTAATAAATTA-TGCTG
1 ATTTACTATTAAATTATTAATG
* *
8375199 ATTTACTTTTAAATT-TTCAATT
1 ATTTACTATTAAATTATT-AATG
* * *
8375221 ATTAACTATTAAATTATCAATT
1 ATTTACTATTAAATTATTAATG
* ** * ** * *
8375243 ATGTGTTACTAAGCTATCATTG
1 ATTTACTATTAAATTATTAATG
* *
8375265 ATTTACTACTAAATTATTTATG
1 ATTTACTATTAAATTATTAATG
8375287 ATTTACTA
1 ATTTACTA
8375295 CTATCAATTA
Statistics
Matches: 262, Mismatches: 69, Indels: 48
0.69 0.18 0.13
Matches are distributed among these distances:
19 17 0.06
20 3 0.01
21 38 0.15
22 191 0.73
23 13 0.05
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (22 bp):
ATTTACTATTAAATTATTAATG
Found at i:8374955 original size:19 final size:19
Alignment explanation
Indices: 8374933--8374974 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
8374923 CTATTACGTT
*
8374933 ATTAATGATTTATTATTAA
1 ATTAATAATTTATTATTAA
*
8374952 ATTATTAATTTATTATTAA
1 ATTAATAATTTATTATTAA
8374971 ATTA
1 ATTA
8374975 TCAATGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTAATAATTTATTATTAA
Found at i:8375476 original size:22 final size:22
Alignment explanation
Indices: 8375451--8375523 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
8375441 TAATACTATG
8375451 TTATTATGCATTTATAATTATA
1 TTATTATGCATTTATAATTATA
* * **
8375473 TTATAATGAATTTACCATTA-A
1 TTATTATGCATTTATAATTATA
* * *
8375494 GGTATTATGCATATATTATTATA
1 -TTATTATGCATTTATAATTATA
*
8375517 TTTTTAT
1 TTATTAT
8375524 TAATTTACTA
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (22 bp):
TTATTATGCATTTATAATTATA
Found at i:8375554 original size:22 final size:22
Alignment explanation
Indices: 8375526--8375612 Score: 97
Period size: 22 Copynumber: 4.0 Consensus size: 22
8375516 ATTTTTATTA
*
8375526 ATTTACTA-AAAAGTTATCAATT
1 ATTTACTATTAAA-TTATCAATT
8375548 ATTTACTATTAAATTATC-ATT
1 ATTTACTATTAAATTATCAATT
* *
8375569 CATTTACTATTAAATTATCACTA
1 -ATTTACTATTAAATTATCAATT
* *
8375592 ATTTACTACTAAGTTATCAAT
1 ATTTACTATTAAATTATCAAT
8375613 GATTACCACT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.05
22 49 0.88
23 4 0.07
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTTACTATTAAATTATCAATT
Found at i:8375558 original size:44 final size:44
Alignment explanation
Indices: 8375522--8375610 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
8375512 TTATATTTTT
*
8375522 ATTAATTTACTA-AAAAGTTATCAATTATTTACTATTAAATTATC
1 ATTAATTTACTATAAAA-TTATCAATAATTTACTATTAAATTATC
* * * * *
8375566 ATTCATTTACTATTAAATTATCACTAATTTACTACTAAGTTATC
1 ATTAATTTACTATAAAATTATCAATAATTTACTATTAAATTATC
8375610 A
1 A
8375611 ATGATTACCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 35 0.92
45 3 0.08
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (44 bp):
ATTAATTTACTATAAAATTATCAATAATTTACTATTAAATTATC
Done.