Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 55 of 64
Found at i:8789020 original size:22 final size:22
Alignment explanation
Indices: 8788995--8789039 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8788985 ATTCATAAAT
* *
8788995 TTATTTATTTGTTATTCATTTA
1 TTATTCATTTGATATTCATTTA
*
8789017 TTATTCATTTGATATTTATTTA
1 TTATTCATTTGATATTCATTTA
8789039 T
1 T
8789040 AATAATACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTCATTTGATATTCATTTA
Found at i:8789144 original size:15 final size:16
Alignment explanation
Indices: 8789116--8789170 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
8789106 GTCTTGGTTT
*
8789116 ATTTATATTCGTTTAAA
1 ATTTAT-TTAGTTTAAA
8789133 ATTTATTT-GTTT-AA
1 ATTTATTTAGTTTAAA
*
8789147 ATTTATTTAG-TTATA
1 ATTTATTTAGTTTAAA
8789162 ATTTATTTA
1 ATTTATTTA
8789171 TTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 12 0.34
15 15 0.43
16 2 0.06
17 6 0.17
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (16 bp):
ATTTATTTAGTTTAAA
Found at i:8789207 original size:26 final size:26
Alignment explanation
Indices: 8789162--8789223 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
8789152 TTTAGTTATA
*
8789162 ATTTATTTATTATTCATAAACATATTT
1 ATTTATATA-TATTCATAAACATATTT
8789189 ATTTATATATATTCATAAACATATTT
1 ATTTATATATATTCATAAACATATTT
*
8789215 GTTTA-ATAT
1 ATTTATATAT
8789224 CCACAAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 4 0.12
26 21 0.64
27 8 0.24
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (26 bp):
ATTTATATATATTCATAAACATATTT
Found at i:8789827 original size:69 final size:71
Alignment explanation
Indices: 8789714--8789852 Score: 205
Period size: 69 Copynumber: 2.0 Consensus size: 71
8789704 CTCAGTTTGT
* * *
8789714 AATTTAATATTTGGATATTTTCTCAATTAAAATATTATCTTTAATTTT-AGTTTAATATAGAACT
1 AATTTAATATTTGGATATTTTCTCAATTAAAATATCATCTTTAATTTTGA-TTTAAGATAAAACT
8789778 AAACATC
65 AAACATC
8789785 AATTTAATATTTGGAT-TTTT-T-AATTTAAAATATCATCTTTAATTTTGATTTAAGATAAAACT
1 AATTTAATATTTGGATATTTTCTCAA-TTAAAATATCATCTTTAATTTTGATTTAAGATAAAACT
8789847 AAACAT
65 AAACAT
8789853 TTTTGAATTA
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
68 2 0.03
69 40 0.63
70 5 0.08
71 16 0.25
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.47
Consensus pattern (71 bp):
AATTTAATATTTGGATATTTTCTCAATTAAAATATCATCTTTAATTTTGATTTAAGATAAAACTA
AACATC
Found at i:8795977 original size:18 final size:18
Alignment explanation
Indices: 8795966--8796006 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
8795956 AAAGTTTATG
8795966 ATTATACAAAAGGTCATA
1 ATTATACAAAAGGTCATA
8795984 ATTATACAAAAGGTCATA
1 ATTATACAAAAGGTCATA
8796002 ATTAT
1 ATTAT
8796007 TTGAATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (18 bp):
ATTATACAAAAGGTCATA
Found at i:8806754 original size:2 final size:2
Alignment explanation
Indices: 8806747--8806774 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8806737 AAAATTTTCA
8806747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8806775 TGTTTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8806761 original size:88 final size:88
Alignment explanation
Indices: 8806579--8806759 Score: 321
Period size: 86 Copynumber: 2.1 Consensus size: 88
8806569 TCTGAACCAA
* *
8806579 ATATGTAAGGAAGAAGTTTTATCGAACTTTTTTTTTCTTTTATAACTTCACTGTCCAACAATGCA
1 ATATATAAGGAAGAAGTTTTATCGAACTTTTTTTTTCTTTTATAACTTCACTGTCCAACAACGCA
*
8806644 AATTTTGAAAATTTTCAATATAT
66 AATTTGGAAAATTTTCAATATAT
8806667 ATATATAAGGAAGAAGTTTTATC-AA-TTTTTTTTTCTTTTATAACTTCACTGTCCAACAACGCA
1 ATATATAAGGAAGAAGTTTTATCGAACTTTTTTTTTCTTTTATAACTTCACTGTCCAACAACGCA
8806730 AATTTGGAAAATTTTCAATATAT
66 AATTTGGAAAATTTTCAATATAT
8806753 ATATATA
1 ATATATA
8806760 TATATATATA
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
86 66 0.73
87 2 0.02
88 22 0.24
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (88 bp):
ATATATAAGGAAGAAGTTTTATCGAACTTTTTTTTTCTTTTATAACTTCACTGTCCAACAACGCA
AATTTGGAAAATTTTCAATATAT
Found at i:8806961 original size:52 final size:53
Alignment explanation
Indices: 8806896--8807017 Score: 131
Period size: 52 Copynumber: 2.3 Consensus size: 53
8806886 GAATTTTAAG
* * * * *
8806896 AGAAAGAAAATTCTTAATTA-GTAAGTATGACTTGCAAGAGAAGAATTTTAAAA
1 AGAAAG-AGATTCTTAATTAGGCAAGTATAACTTACAAGAGAAGAATTATAAAA
* * * *
8806949 AGAAAGGGATTCTTAA-TAGGCAAGTTTAATTTACAAGAGAAGAATTATAAGA
1 AGAAAGAGATTCTTAATTAGGCAAGTATAACTTACAAGAGAAGAATTATAAAA
*
8807001 AGAGAGAGATTCTTAAT
1 AGAAAGAGATTCTTAAT
8807018 GGGTAAGTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
51 2 0.04
52 48 0.86
53 6 0.11
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.28
Consensus pattern (53 bp):
AGAAAGAGATTCTTAATTAGGCAAGTATAACTTACAAGAGAAGAATTATAAAA
Found at i:8807661 original size:25 final size:25
Alignment explanation
Indices: 8807633--8807681 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
8807623 CGAGACAATA
8807633 AAGAGCTAAAAGTTCAAGATGTGAG
1 AAGAGCTAAAAGTTCAAGATGTGAG
* * *
8807658 AAGAGTTAAAGGTTTAAGATGTGA
1 AAGAGCTAAAAGTTCAAGATGTGA
8807682 AAAGTGCATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.04, G:0.29, T:0.24
Consensus pattern (25 bp):
AAGAGCTAAAAGTTCAAGATGTGAG
Found at i:8807946 original size:11 final size:11
Alignment explanation
Indices: 8807928--8807959 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8807918 AATCTCATAA
8807928 GAGATTTGTTT
1 GAGATTTGTTT
*
8807939 GGGATTTGTTT
1 GAGATTTGTTT
8807950 GAGATTTGTT
1 GAGATTTGTT
8807960 AGATATTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:8808063 original size:52 final size:52
Alignment explanation
Indices: 8807983--8808139 Score: 176
Period size: 52 Copynumber: 3.0 Consensus size: 52
8807973 TGGATAAAAA
* *
8807983 GACTTGCAAAAGAAGAATTTTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
* * * *
8808035 GACTTGCAAGAGAAAAATTCTAAAAGAAA-ATGAATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGAAAGA-GGATTCTTAATAGGTAAGTTT
* * * *
8808087 AACTTACACGAGAAGAATTCTAAGAG-GAGAGAGATTCTTAAT-GGATAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGAAAGAG-GATTCTTAATAGG-TAAGTTT
8808139 G
1 G
8808140 TATGGTTATA
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
51 5 0.06
52 81 0.94
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
Found at i:8811695 original size:25 final size:24
Alignment explanation
Indices: 8811666--8811725 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
8811656 TTAATATAAC
8811666 TATTAAAATATTAAAAAATATTTAT
1 TATTAAAATATT-AAAAATATTTAT
* *
8811691 TATTAAATTATATTGAAATTATTTAT
1 TATTAAA--ATATTAAAAATATTTAT
8811717 TATTAAAAT
1 TATTAAAAT
8811726 TGTTAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 2 0.06
25 7 0.23
26 17 0.55
27 5 0.16
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
TATTAAAATATTAAAAATATTTAT
Found at i:8811929 original size:17 final size:16
Alignment explanation
Indices: 8811898--8811940 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
8811888 TTAAAATAGT
8811898 AATATTTAT-TATTAA
1 AATATTTATATATTAA
8811913 AATATTTATACTATTAA
1 AATATTTATA-TATTAA
*
8811930 AATGTTTATAT
1 AATATTTATAT
8811941 TTTATATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 9 0.36
16 1 0.04
17 15 0.60
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
AATATTTATATATTAA
Found at i:8811994 original size:12 final size:12
Alignment explanation
Indices: 8811977--8812016 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
8811967 TCATAACAAA
8811977 AAATTTTTTATT
1 AAATTTTTTATT
8811989 AAATTTTTTATTT
1 AAATTTTTTA-TT
* *
8812002 ATATTTATTATT
1 AAATTTTTTATT
8812014 AAA
1 AAA
8812017 ATAGTAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AAATTTTTTATT
Found at i:8812007 original size:13 final size:13
Alignment explanation
Indices: 8811977--8812018 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
8811967 TCATAACAAA
8811977 AAATTTTTTA-TT
1 AAATTTTTTATTT
8811989 AAATTTTTTATTT
1 AAATTTTTTATTT
* * *
8812002 ATATTTATTATTA
1 AAATTTTTTATTT
8812015 AAAT
1 AAAT
8812019 AGTAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AAATTTTTTATTT
Found at i:8812346 original size:24 final size:23
Alignment explanation
Indices: 8812300--8812346 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8812290 TAAATATTTT
*
8812300 AATTTTTTAATTAAAATTAAATA
1 AATTTTTTAATTAAAATAAAATA
* *
8812323 AATTTTTTTATTAATATAATAATA
1 AATTTTTTAATTAAAATAA-AATA
8812347 TTTTAAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTTTTTAATTAAAATAAAATA
Found at i:8814439 original size:14 final size:13
Alignment explanation
Indices: 8814404--8814431 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8814394 ATTTATTAAA
8814404 TTTAATAATATTT
1 TTTAATAATATTT
8814417 TTTAATAATATTT
1 TTTAATAATATTT
8814430 TT
1 TT
8814432 ACATTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATAATATTT
Found at i:8814662 original size:25 final size:25
Alignment explanation
Indices: 8814634--8814688 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
8814624 TTTTAGTTCG
8814634 TTTATATTAATTTATGATT-T-ATTTA
1 TTTATATTAA-TT-TGATTATAATTTA
* *
8814659 TTTAAATTTATTTGATTATAATTTA
1 TTTATATTAATTTGATTATAATTTA
8814684 TTTAT
1 TTTAT
8814689 TATTCATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 5 0.20
24 3 0.12
25 17 0.68
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTATATTAATTTGATTATAATTTA
Found at i:8814669 original size:14 final size:15
Alignment explanation
Indices: 8814638--8814689 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
8814628 AGTTCGTTTA
* *
8814638 TATTAATTTATGATT
1 TATTTATTTATAATT
8814653 TATTTATTTA-AATT
1 TATTTATTTATAATT
8814667 TATTTGA-TTATAATT
1 TATTT-ATTTATAATT
8814682 TATTTATT
1 TATTTATT
8814690 ATTCATAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 12 0.38
15 20 0.62
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (15 bp):
TATTTATTTATAATT
Found at i:8814690 original size:14 final size:14
Alignment explanation
Indices: 8814645--8814691 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
8814635 TTATATTAAT
*
8814645 TTATGATTTATTTA
1 TTATAATTTATTTA
8814659 TT-TAAATTTATTTGA
1 TTAT-AATTTATTT-A
8814674 TTATAATTTATTTA
1 TTATAATTTATTTA
8814688 TTAT
1 TTAT
8814692 TCATAAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 1 0.03
14 15 0.52
15 12 0.41
16 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (14 bp):
TTATAATTTATTTA
Found at i:8815690 original size:21 final size:21
Alignment explanation
Indices: 8815665--8815711 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
8815655 GAGGTTGGGT
8815665 TTTCAAGATAAGTTTTGGTGG
1 TTTCAAGATAAGTTTTGGTGG
8815686 TTTCAAGATAAGTTTTGGTGG
1 TTTCAAGATAAGTTTTGGTGG
8815707 TTTCA
1 TTTCA
8815712 GCAAAACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (21 bp):
TTTCAAGATAAGTTTTGGTGG
Found at i:8817825 original size:37 final size:37
Alignment explanation
Indices: 8817770--8817840 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
8817760 GTAATTGCTG
* * *
8817770 GTAAGAAGATTGATTGAATAAGATAAACATATTACTA
1 GTAAAAAGATTGACTGAATAAGATAAACACATTACTA
8817807 GTAAAAAGATTGACTGAATAAGATAAACACATTA
1 GTAAAAAGATTGACTGAATAAGATAAACACATTA
8817841 ACAATTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.27
Consensus pattern (37 bp):
GTAAAAAGATTGACTGAATAAGATAAACACATTACTA
Found at i:8825265 original size:16 final size:16
Alignment explanation
Indices: 8825244--8825274 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8825234 TTAGAGTTTT
8825244 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8825260 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8825275 GTTTTGGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8825284 original size:14 final size:15
Alignment explanation
Indices: 8825262--8825295 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8825252 AGTTTGGAGA
*
8825262 TTTTAGGGTTT-GGG
1 TTTTGGGGTTTGGGG
8825276 TTTTGGGGTTTGGGG
1 TTTTGGGGTTTGGGG
8825291 TTTTG
1 TTTTG
8825296 ATTTAAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.03, C:0.00, G:0.44, T:0.53
Consensus pattern (15 bp):
TTTTGGGGTTTGGGG
Found at i:8825325 original size:51 final size:51
Alignment explanation
Indices: 8825230--8825339 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
8825220 AGGATATAGA
* * * *
8825230 AGGTTTAGAGTTTTGATTTTAGAGTTTGGAGATTTTAGGGTTTGGGTTTTG
1 AGGTTTGGGGTTTTGATTTAAGAGTTTGGAGATTTTAGGGTTTGGATTTTG
* * *
8825281 GGGTTTGGGGTTTTGATTTAAG-GTTTTG-GATTTTAGGGATTTTGGATTTTT
1 AGGTTTGGGGTTTTGATTTAAGAGTTTGGAGATTTTAGGG--TTTGGATTTTG
8825332 AGGTTTGG
1 AGGTTTGG
8825340 ATTTTAGGGG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
49 10 0.20
50 5 0.10
51 34 0.69
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (51 bp):
AGGTTTGGGGTTTTGATTTAAGAGTTTGGAGATTTTAGGGTTTGGATTTTG
Found at i:8825333 original size:17 final size:16
Alignment explanation
Indices: 8825304--8825461 Score: 155
Period size: 16 Copynumber: 9.9 Consensus size: 16
8825294 TGATTTAAGG
8825304 TTTTGGATTTTAGGGA
1 TTTTGGATTTTAGGGA
8825320 TTTTGGATTTTTA-GG-
1 TTTTGGA-TTTTAGGGA
*
8825335 -TTTGGATTTTAGGGG
1 TTTTGGATTTTAGGGA
*
8825350 TTTTGAATTTTATGGG-
1 TTTTGGATTTTA-GGGA
*
8825366 GTTTGGATTTTAGTGGA
1 TTTTGGATTTTAG-GGA
* *
8825383 TTTCGGATTTTAGGGG
1 TTTTGGATTTTAGGGA
* * *
8825399 GTTTGGATTTAAAGGA
1 TTTTGGATTTTAGGGA
8825415 TTTTGGATTTTTAGGGA
1 TTTTGGA-TTTTAGGGA
* *
8825432 TTTTGAATTTTA-AGA
1 TTTTGGATTTTAGGGA
8825447 TTTTGGATTTTAGGG
1 TTTTGGATTTTAGGG
8825462 GTCTTAGAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.04
14 8 0.07
15 14 0.12
16 56 0.49
17 32 0.28
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.50
Consensus pattern (16 bp):
TTTTGGATTTTAGGGA
Found at i:8825653 original size:26 final size:27
Alignment explanation
Indices: 8825603--8825653 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
8825593 TGAAAATTAA
* * *
8825603 TTAAAAATTTCTTATATATTTATTTTT
1 TTAAAAATTTATTATATAATAATTTTT
8825630 TTAAAAATTTATTA-ATAATAATTT
1 TTAAAAATTTATTATATAATAATTT
8825654 CGTAACATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
TTAAAAATTTATTATATAATAATTTTT
Found at i:8827377 original size:88 final size:88
Alignment explanation
Indices: 8827228--8827571 Score: 395
Period size: 88 Copynumber: 3.9 Consensus size: 88
8827218 ACATAAAACT
* * * * * * * * *
8827228 ATTGGGATGATACCGTAAGTGAAAAAATAATGAATCGATTGAGATAATATCACGAATCAAATTTA
1 ATTGGGATAACACCATAAGTCAAAAAATAAAGAATCGATCGGGATAACACCACGAATCAAATTTA
*
8827293 TGCCCGGAGGTCTTACAGGATCG
66 TGCCCGGAGGTCTTACAGAATCG
* * * *
8827316 ATTGGGATAATATCGTAAGTTAAAAAATAGAA-AATCGATCGGGATAACA-CAGCGAATCAAATT
1 ATTGGGATAACACCATAAGTCAAAAAATA-AAGAATCGATCGGGATAACACCA-CGAATCAAATT
*
8827379 TATGCCCGGAGGTCTTACAGAATCA
64 TATGCCCGGAGGTCTTACAGAATCG
*** * * * * **
8827404 ATTAAAATAACACCACAAGTCAAGAGATAAAGAATCGATCAGGATAACACCGTGAATCAAATTTA
1 ATTGGGATAACACCATAAGTCAAAAAATAAAGAATCGATCGGGATAACACCACGAATCAAATTTA
8827469 TGCCCGGAGGTCTTACAGAATCG
66 TGCCCGGAGGTCTTACAGAATCG
* * * * *
8827492 ATTGGGATAACACCAAAAGTCAAGAGATAAAGAATCAATCGGGATAACACCATGAATCAAATTTA
1 ATTGGGATAACACCATAAGTCAAAAAATAAAGAATCGATCGGGATAACACCACGAATCAAATTTA
8827557 TGCCCGGAGGTCTTA
66 TGCCCGGAGGTCTTA
8827572 GAAATCATAC
Statistics
Matches: 222, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
87 4 0.02
88 216 0.97
89 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.23
Consensus pattern (88 bp):
ATTGGGATAACACCATAAGTCAAAAAATAAAGAATCGATCGGGATAACACCACGAATCAAATTTA
TGCCCGGAGGTCTTACAGAATCG
Found at i:8827612 original size:23 final size:22
Alignment explanation
Indices: 8827556--8827623 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
8827546 AATCAAATTT
*
8827556 ATGCCCGGAGGTCTTA-GAAATC
1 ATGCCC-GAGGTCTTACAAAATC
* *
8827578 ATACTCGAAGGTCTTACAAAATC
1 ATGCCCG-AGGTCTTACAAAATC
*
8827601 ATGCCCAGAGGTCTTACAGAATC
1 ATGCCC-GAGGTCTTACAAAATC
8827624 GATTGGGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 12 0.32
23 23 0.62
24 1 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (22 bp):
ATGCCCGAGGTCTTACAAAATC
Found at i:8827749 original size:133 final size:133
Alignment explanation
Indices: 8827468--8827728 Score: 405
Period size: 133 Copynumber: 2.0 Consensus size: 133
8827458 AATCAAATTT
* * *
8827468 ATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCAAAAGTCAAGAGATAAAGAATCAATCG
1 ATGCCCAGAGGTCTTACAGAATCGATTGGGATAACAACAAAAGTCAAAAGATAAAGAATCAATCG
* * *
8827533 GGATAACACCATGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATACTCGAAGGTCTTACAAA
66 AGATAACACCATGAATCAAATTTATGCCCGGAGGACTTAGAAATCATACCCGAAGGTCTTACAAA
8827598 ATC
131 ATC
* *
8827601 ATGCCCAGAGGTCTTACAGAATCGATTGGGATAACAACATAAGTCAAAAGATAAAGAATCGATCG
1 ATGCCCAGAGGTCTTACAGAATCGATTGGGATAACAACAAAAGTCAAAAGATAAAGAATCAATCG
* * * * *
8827666 AGATAACATCGTGAATCGAATTTATGCCCGGAGGACTTAGAAATCATGCCCGGAGGTCTTACA
66 AGATAACACCATGAATCAAATTTATGCCCGGAGGACTTAGAAATCATACCCGAAGGTCTTACA
8827729 GAATTGTGTT
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 115 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (133 bp):
ATGCCCAGAGGTCTTACAGAATCGATTGGGATAACAACAAAAGTCAAAAGATAAAGAATCAATCG
AGATAACACCATGAATCAAATTTATGCCCGGAGGACTTAGAAATCATACCCGAAGGTCTTACAAA
ATC
Found at i:8827897 original size:154 final size:156
Alignment explanation
Indices: 8827556--8827905 Score: 458
Period size: 154 Copynumber: 2.3 Consensus size: 156
8827546 AATCAAATTT
* * *
8827556 ATGCCCGGAGGTCTTAGA-AATCATACTC-GAAGGTCTTACAAAATCATGCCCAGAGGTCTTACA
1 ATGCCCGGAGGTCTTACAGAATCGTACTCAG-AGGTCTTACAAAATCATGCCCAGAAGTCTTACA
* * * * *
8827619 GAATCGATTGGGATAACAACATAAGTCAAAAGATAAAGAATCGATCGAGATAACATCGTGAATCG
65 GAATCGACTAGGATAACAACATAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGTGAATCA
* *
8827684 AATTTATGCCCGGAGGACTTAGAAATC
130 AATTTATGCCCGAAGAACTTAGAAATC
* ** *
8827711 ATGCCCGGAGGTCTTACAGAATTGTGTTCAGAGGTCTTA-AAAATCATGCTC-GAAAGTCTTACA
1 ATGCCCGGAGGTCTTACAGAATCGTACTCAGAGGTCTTACAAAATCATGCCCAG-AAGTCTTACA
* * * * *
8827774 GAATTGACTAGGATAACACCGTAAGTCAGAA-ATAAAAAATCGATCGGGATAACACCGTGAATCA
65 GAATCGACTAGGATAACAACATAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGTGAATCA
8827838 AATTTATGCCCGAAGAACTTAGAAATC
130 AATTTATGCCCGAAGAACTTAGAAATC
* *
8827865 ATGCCCGGAGGTCTTACAGAATCGTACCCAGAGGTTTTACA
1 ATGCCCGGAGGTCTTACAGAATCGTACTCAGAGGTCTTACA
8827906 GAATTGACTA
Statistics
Matches: 167, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
154 89 0.53
155 63 0.38
156 14 0.08
157 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (156 bp):
ATGCCCGGAGGTCTTACAGAATCGTACTCAGAGGTCTTACAAAATCATGCCCAGAAGTCTTACAG
AATCGACTAGGATAACAACATAAGTCAAAAGATAAAAAATCGATCGAGATAACACCGTGAATCAA
ATTTATGCCCGAAGAACTTAGAAATC
Found at i:8827932 original size:132 final size:132
Alignment explanation
Indices: 8827769--8828031 Score: 402
Period size: 132 Copynumber: 2.0 Consensus size: 132
8827759 CTCGAAAGTC
* * **
8827769 TTACAGAATTGACTAGGATAACACCGTAAGTCAGAAATAAAAAATCGATCGGGATAACACCGTGA
1 TTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGGGATAACACCACGA
*
8827834 ATCAAATTTATGCCC-GAAGAACTTAGAAATCATGCCCGGAGGTCTTACAGAATCGTACCCAGAG
66 ATCAAATTTATGCCCAG-AGAACTTAGAAATCATACCCGGAGGTCTTACAGAATCGTACCCAGAG
8827898 GTT
130 GTT
* * *
8827901 TTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAGAATCGATTGGGATAACATCACGA
1 TTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGGGATAACACCACGA
* * * *
8827966 ATCGAATTTATGCCCAGAGATCTTAGAAATCATACCCGGAGGTCTTACAGAATCGTGCCCGGAGG
66 ATCAAATTTATGCCCAGAGAACTTAGAAATCATACCCGGAGGTCTTACAGAATCGTACCCAGAGG
8828031 T
131 T
8828032 CTTAAAAATT
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 117 0.99
133 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (132 bp):
TTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAAAATCGATCGGGATAACACCACGA
ATCAAATTTATGCCCAGAGAACTTAGAAATCATACCCGGAGGTCTTACAGAATCGTACCCAGAGG
TT
Found at i:8828026 original size:23 final size:23
Alignment explanation
Indices: 8827975--8828063 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 23
8827965 AATCGAATTT
* * *
8827975 ATGCCCAGAGATCTTAGA-AATC
1 ATGCCCGGAGGTCTTACAGAATC
*
8827997 ATACCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
* * *
8828020 GTGCCCGGAGGTCTTA-AAAATT
1 ATGCCCGGAGGTCTTACAGAATC
8828042 ATGCCCGGAGGTCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
8828064 TGACTGGGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
22 33 0.60
23 22 0.40
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAGAATC
Found at i:8828049 original size:45 final size:45
Alignment explanation
Indices: 8827976--8828063 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
8827966 ATCGAATTTA
*
8827976 TGCCCAGAGATCTTAGAAATCATACCCGGAGGTCTTACAGAATCG
1 TGCCCAGAGATCTTAAAAATCATACCCGGAGGTCTTACAGAATCG
* * * *
8828021 TGCCCGGAGGTCTTAAAAATTATGCCCGGAGGTCTTACAGAAT
1 TGCCCAGAGATCTTAAAAATCATACCCGGAGGTCTTACAGAAT
8828064 TGACTGGGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (45 bp):
TGCCCAGAGATCTTAAAAATCATACCCGGAGGTCTTACAGAATCG
Found at i:8828096 original size:287 final size:285
Alignment explanation
Indices: 8827466--8828322 Score: 1101
Period size: 287 Copynumber: 3.0 Consensus size: 285
8827456 TGAATCAAAT
* * * * *
8827466 TTATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCAAAAGTCAAGAGATAAAGAATCAAT
1 TTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCAAAAGTCAAGAAATAAAAAATCGAT
* * * * * *
8827531 CGGGATAACACCATGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATACTCGAAGGTCTTACA
66 CGGGATAACACCGTGAATCAAATTTATGCCC-GAAGACTTAGAAATCATGCCCGGAGGTCTTACA
* * * * * **
8827596 AAATCATGCCCAGAGGTCTTACAGAATCGATTGGGATAACAACATAAGTCAAAAGATAAAGAATC
130 GAATCGTGCCCAGAGGTCTTACAGAATTGACT-GGATAACACCGCAAGTCAAAA-ATAAAGAATC
* * * *
8827661 GATCGAGATAACATCGTGAATCGAATTTATGCCCGGAGGA-CTTAGAAATCATGCCCGGAGGTCT
193 GATTGGGATAACATCATGAATCGAATTTATGCCCAGA-GATCTTAGAAATCATGCCCGGAGGTCT
* **
8827725 TACAGAATTGTGTTCAGAGGTCTTAAAAA
257 TACAGAATCGTGCCCAGAGGTCTTAAAAA
* * * * * **
8827754 TCATGCTCGAAAGTCTTACAGAATTGACTAGGATAACACCGTAAGTC-AGAAATAAAAAATCGAT
1 TTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCAAAAGTCAAGAAATAAAAAATCGAT
8827818 CGGGATAACACCGTGAATCAAATTTATGCCCGAAGAACTTAGAAATCATGCCCGGAGGTCTTACA
66 CGGGATAACACCGTGAATCAAATTTATGCCCGAAG-ACTTAGAAATCATGCCCGGAGGTCTTACA
* *
8827883 GAATCGTACCCAGAGGTTTTACAGAATTGACTAGGATAACACCGCAAGTCAAAAATAAAGAATCG
130 GAATCGTGCCCAGAGGTCTTACAGAATTGACT-GGATAACACCGCAAGTCAAAAATAAAGAATCG
* *
8827948 ATTGGGATAACATCACGAATCGAATTTATGCCCAGAGATCTTAGAAATCATACCCGGAGGTCTTA
194 ATTGGGATAACATCATGAATCGAATTTATGCCCAGAGATCTTAGAAATCATGCCCGGAGGTCTTA
*
8828013 CAGAATCGTGCCCGGAGGTCTTAAAAA
259 CAGAATCGTGCCCAGAGGTCTTAAAAA
* * *
8828040 TTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACAACACAAGTCAAAAAATAAAAAATCGAT
1 TTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCAAAAGTCAAGAAATAAAAAATCGAT
* * *
8828105 CGGGATAACACCGTAAATCAAATTTATGCCCGGACGCCTTAGAAATCATGCCCGGAGGTCTTACA
66 CGGGATAACACCGTGAATCAAATTTATGCCC-GAAGACTTAGAAATCATGCCCGGAGGTCTTACA
* * * *
8828170 GAATCGTGTCCGGAGGTCTTACAGAATTGACTGAGATGACACCGCAAGTCAAAAATAAAGAATCT
130 GAATCGTGCCCAGAGGTCTTACAGAATTGACTG-GATAACACCGCAAGTCAAAAATAAAGAATCG
* * * * * *
8828235 ATTAGGATAACA-CAGTGAATCAAATTTGTGCCTAGA-AGTCTTAGAAATCATGTCCGAAGGTCT
194 ATTGGGATAACATCA-TGAATCGAATTTATGCCCAGAGA-TCTTAGAAATCATGCCCGGAGGTCT
* *
8828298 TACAGAATCGTGCTCAAAGGTCTTA
257 TACAGAATCGTGCCCAGAGGTCTTA
8828323 CAGAATTGAC
Statistics
Matches: 495, Mismatches: 67, Indels: 15
0.86 0.12 0.03
Matches are distributed among these distances:
285 2 0.00
286 136 0.27
287 316 0.64
288 41 0.08
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (285 bp):
TTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCAAAAGTCAAGAAATAAAAAATCGAT
CGGGATAACACCGTGAATCAAATTTATGCCCGAAGACTTAGAAATCATGCCCGGAGGTCTTACAG
AATCGTGCCCAGAGGTCTTACAGAATTGACTGGATAACACCGCAAGTCAAAAATAAAGAATCGAT
TGGGATAACATCATGAATCGAATTTATGCCCAGAGATCTTAGAAATCATGCCCGGAGGTCTTACA
GAATCGTGCCCAGAGGTCTTAAAAA
Found at i:8828148 original size:155 final size:155
Alignment explanation
Indices: 8827861--8828192 Score: 447
Period size: 155 Copynumber: 2.1 Consensus size: 155
8827851 AGAACTTAGA
* * * * *
8827861 AATCATGCCCGGAGGTCTTACAGAATCGTACCCAGAGGTTTTACAGAATTGACTAGGATAACACC
1 AATCGTGCCCGGAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATTGACTAGGATAACAAC
* * * * *
8827926 GCAAGTCAAAAATAAAGAATCGATTGGGATAACATCACGAATCGAATTTATGCCCAGAGATCTTA
66 ACAAGTCAAAAATAAAAAATCGATCGGGATAACATCACGAATCAAATTTATGCCCAGAGACCTTA
8827991 GAAATCATACCCGGAGGTCTTACAG
131 GAAATCATACCCGGAGGTCTTACAG
* * * *
8828016 AATCGTGCCCGGAGGTCTTA-AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACAAC
1 AATCGTGCCCGGAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATTGACTAGGATAACAAC
*
8828080 ACAAGTCAAAAAATAAAAAATCGATCGGGATAACA-C-CGTAAATCAAATTTATGCCCGGACG-C
66 ACAAGTC-AAAAATAAAAAATCGATCGGGATAACATCACG--AATCAAATTTATGCCCAGA-GAC
*
8828142 CTTAGAAATCATGCCCGGAGGTCTTACAG
127 CTTAGAAATCATACCCGGAGGTCTTACAG
*
8828171 AATCGTGTCCGGAGGTCTTACA
1 AATCGTGCCCGGAGGTCTTACA
8828193 GAATTGACTG
Statistics
Matches: 155, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
153 2 0.01
154 43 0.28
155 108 0.70
156 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (155 bp):
AATCGTGCCCGGAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATTGACTAGGATAACAAC
ACAAGTCAAAAATAAAAAATCGATCGGGATAACATCACGAATCAAATTTATGCCCAGAGACCTTA
GAAATCATACCCGGAGGTCTTACAG
Found at i:8828167 original size:22 final size:23
Alignment explanation
Indices: 8828130--8828196 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
8828120 AATCAAATTT
* * *
8828130 ATGCCCGGACGCCTTAGA-AATC
1 ATGCCCGGAGGTCTTACAGAATC
8828152 ATGCCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
* *
8828175 GTGTCCGGAGGTCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
8828197 TGACTGAGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 15 0.38
23 24 0.62
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAGAATC
Found at i:8828259 original size:132 final size:131
Alignment explanation
Indices: 8828016--8828401 Score: 477
Period size: 132 Copynumber: 2.9 Consensus size: 131
8828006 GGTCTTACAG
* * ** *
8828016 AATCGTGCCCGGAGGTCTTA-AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACAAC
1 AATCATGCCCGGAGGTCTTACAGAATCGTG-CCGGAGGTCTTACAGAATTGACTGGGATAACACC
*
8828080 ACAAGTCAAAAAATAAAAAATCGATCGGGATAACACCGTAAATCAAATTTATGCCCGGACGCCTT
65 ACAAGTC-AAAAATAAAAAATCGATCGGGATAACACCGTAAATCAAATTTATGCCCGGAAGCCTT
8828145 AGA
129 AGA
* *
8828148 AATCATGCCCGGAGGTCTTACAGAATCGTGTCCGGAGGTCTTACAGAATTGACTGAGATGACACC
1 AATCATGCCCGGAGGTCTTACAGAATCGTG-CCGGAGGTCTTACAGAATTGACTGGGATAACACC
* * * ** * * * ** *
8828213 GCAAGTCAAAAATAAAGAATCTATTAGGATAACACAGTGAATCAAATTTGTGCCTAGAAGTCTTA
65 ACAAGTCAAAAATAAAAAATCGATCGGGATAACACCGTAAATCAAATTTATGCCCGGAAGCCTTA
8828278 GA
130 GA
* * **
8828280 AATCATGTCCGAAGGTCTTACAGAATCGTGCTCAAAGGTCTTACAGAATTGACTGGGATAACACC
1 AATCATGCCCGGAGGTCTTACAGAATCGTGC-CGGAGGTCTTACAGAATTGACTGGGATAACACC
* * * *
8828345 ACAAGTTGAAAGATAAAAAATCGATCGGGATAACACCGTAAATCGAATCTATGCCCG
65 ACAAG-TCAAAAATAAAAAATCGATCGGGATAACACCGTAAATCAAATTTATGCCCG
8828402 AAGGTCTTGA
Statistics
Matches: 211, Mismatches: 40, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
131 1 0.00
132 129 0.61
133 81 0.38
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (131 bp):
AATCATGCCCGGAGGTCTTACAGAATCGTGCCGGAGGTCTTACAGAATTGACTGGGATAACACCA
CAAGTCAAAAATAAAAAATCGATCGGGATAACACCGTAAATCAAATTTATGCCCGGAAGCCTTAG
A
Found at i:8828627 original size:123 final size:123
Alignment explanation
Indices: 8828420--8828650 Score: 419
Period size: 123 Copynumber: 1.9 Consensus size: 123
8828410 GAAAGTTATA
*
8828420 CGCAGAGGCTTTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCA
1 CGCAAAGGCTTTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCA
8828485 TAATCAGAGGCAATGAAACTTTAAAATTTTGAA-AATCTTTTAATCTTTGAAAGTCTTG
66 TAATCAGAGGCAATGAAACTTTAAAATTTT-AAGAATCTTTTAATCTTTGAAAGTCTTG
* *
8828543 CGCAAAGGCTTTTGGAGATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCA
1 CGCAAAGGCTTTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCA
8828608 TAATCAGAGGCAATGAAACTTTAAAATTTTAAGAATCTTTTAA
66 TAATCAGAGGCAATGAAACTTTAAAATTTTAAGAATCTTTTAA
8828651 AACATAGCTT
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
122 2 0.02
123 102 0.98
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (123 bp):
CGCAAAGGCTTTTAGAGATTATGCCCAGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCA
TAATCAGAGGCAATGAAACTTTAAAATTTTAAGAATCTTTTAATCTTTGAAAGTCTTG
Found at i:8828762 original size:41 final size:41
Alignment explanation
Indices: 8828717--8828894 Score: 277
Period size: 41 Copynumber: 4.3 Consensus size: 41
8828707 AAGTTCCTTC
8828717 TAAACAGAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
1 TAAACAGAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
*
8828758 TAAACAAAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
1 TAAACAGAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
* *
8828799 TAAACAGAGGCTTTAAAATCTTGATTGAAATTGGTTCCTCT
1 TAAACAGAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
* * *
8828840 TAAACAGAGGTTTTGAAATCTTGATTGAGAA-CGGTTCTTCT
1 TAAACAGAGGCTTTGAAATCTTGATTGA-AATTGGTTCATCT
*
8828881 TAAACAGAGACTTT
1 TAAACAGAGGCTTT
8828895 AAAACTTTAA
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
41 124 0.98
42 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (41 bp):
TAAACAGAGGCTTTGAAATCTTGATTGAAATTGGTTCATCT
Found at i:8830203 original size:9 final size:10
Alignment explanation
Indices: 8830178--8830202 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8830168 AAGGGACATA
8830178 TTTTTTCTTT
1 TTTTTTCTTT
8830188 TTTTTTCTTT
1 TTTTTTCTTT
8830198 TTTTT
1 TTTTT
8830203 CAAATTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:8830612 original size:1 final size:1
Alignment explanation
Indices: 8830601--8830646 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
8830591 AATATGTCCC
* * * *
8830601 TTTTATTTTTTTTCTTTTTTTTTTTTTTTTTTTTATTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8830647 GATGCCCCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.04, C:0.02, G:0.02, T:0.91
Consensus pattern (1 bp):
T
Found at i:8830625 original size:21 final size:21
Alignment explanation
Indices: 8830601--8830646 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8830591 AATATGTCCC
* *
8830601 TTTTATTTTTTTTCTTTTTTT
1 TTTTATTTTTTTTATTTTTTG
*
8830622 TTTTTTTTTTTTTATTTTTTG
1 TTTTATTTTTTTTATTTTTTG
8830643 TTTT
1 TTTT
8830647 GATGCCCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.02, G:0.02, T:0.91
Consensus pattern (21 bp):
TTTTATTTTTTTTATTTTTTG
Found at i:8835810 original size:14 final size:15
Alignment explanation
Indices: 8835788--8835821 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8835778 AGTTTGAAGA
*
8835788 TTTTAGGGTTT-GGG
1 TTTTGGGGTTTGGGG
8835802 TTTTGGGGTTTGGGG
1 TTTTGGGGTTTGGGG
8835817 TTTTG
1 TTTTG
8835822 ATTTAAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.03, C:0.00, G:0.44, T:0.53
Consensus pattern (15 bp):
TTTTGGGGTTTGGGG
Found at i:8835851 original size:16 final size:16
Alignment explanation
Indices: 8835830--8835969 Score: 135
Period size: 16 Copynumber: 8.9 Consensus size: 16
8835820 TGATTTAAGG
*
8835830 TTTTGGATTTTAGGGA
1 TTTTGAATTTTAGGGA
* *
8835846 TTTTGGATTTTTGGG-
1 TTTTGAATTTTAGGGA
* *
8835861 -TTTGGATTTTAGGGG
1 TTTTGAATTTTAGGGA
* *
8835876 TTTCGAATTTTAGGGG
1 TTTTGAATTTTAGGGA
* *
8835892 GTTTGAATTTAAGGGA
1 TTTTGAATTTTAGGGA
*
8835908 TTTCGAATTTTTAGGGA
1 TTTTGAA-TTTTAGGGA
* *
8835925 TTTCGAGTTTTA-GGA
1 TTTTGAATTTTAGGGA
8835940 TTTTGAATTTTA-GGA
1 TTTTGAATTTTAGGGA
8835955 TTTTGAATTTTAGGG
1 TTTTGAATTTTAGGG
8835970 GTCTTAGAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
14 13 0.12
15 28 0.26
16 51 0.48
17 14 0.13
ACGTcount: A:0.20, C:0.02, G:0.29, T:0.49
Consensus pattern (16 bp):
TTTTGAATTTTAGGGA
Found at i:8835894 original size:17 final size:16
Alignment explanation
Indices: 8835836--8835969 Score: 125
Period size: 15 Copynumber: 8.6 Consensus size: 16
8835826 AAGGTTTTGG
* *
8835836 ATTTTAGGGATTTTGG
1 ATTTTAGGGATTTCGA
* *
8835852 ATTTTTGGG-TTT-GG
1 ATTTTAGGGATTTCGA
*
8835866 ATTTTAGGGGTTTCGA
1 ATTTTAGGGATTTCGA
*
8835882 ATTTTAGGGGGTTT-GA
1 ATTTTA-GGGATTTCGA
*
8835898 ATTTAAGGGATTTCGA
1 ATTTTAGGGATTTCGA
8835914 ATTTTTAGGGATTTCGA
1 A-TTTTAGGGATTTCGA
* *
8835931 GTTTTA-GGATTTTGA
1 ATTTTAGGGATTTCGA
*
8835946 ATTTTA-GGATTTTGA
1 ATTTTAGGGATTTCGA
8835961 ATTTTAGGG
1 ATTTTAGGG
8835970 GTCTTAGAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.10
15 40 0.39
16 32 0.31
17 21 0.20
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.48
Consensus pattern (16 bp):
ATTTTAGGGATTTCGA
Found at i:8837498 original size:27 final size:28
Alignment explanation
Indices: 8837468--8837546 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 28
8837458 TTTTTATTTT
8837468 TTTTATTTT-TTTGTTTATT-AATAATTA
1 TTTTATTTTATTT-TTTATTAAATAATTA
*
8837495 TTTTATTTTATTTTTTATTAAATTATTA
1 TTTTATTTTATTTTTTATTAAATAATTA
8837523 TTATTATTATTATTATTATTATTA
1 TT-TTATT-TTATT-TT-TTATTA
8837547 TTATAGTGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
27 15 0.33
28 12 0.27
29 5 0.11
30 5 0.11
31 2 0.04
32 6 0.13
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (28 bp):
TTTTATTTTATTTTTTATTAAATAATTA
Found at i:8837524 original size:3 final size:3
Alignment explanation
Indices: 8837491--8837550 Score: 76
Period size: 3 Copynumber: 21.7 Consensus size: 3
8837481 TTTATTAATA
*
8837491 ATT ATT -TT ATT -TT ATT -TT -TT ATT A-A ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8837534 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
8837551 AGTGAAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
2 9 0.18
3 42 0.82
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:8847931 original size:34 final size:34
Alignment explanation
Indices: 8847888--8847956 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
8847878 TAATAAGTCA
8847888 AAAACATGGACAACCATTATTTGAAATTTAGACT
1 AAAACATGGACAACCATTATTTGAAATTTAGACT
8847922 AAAACATGGACAACCATTATTTGAAATTTAGACT
1 AAAACATGGACAACCATTATTTGAAATTTAGACT
8847956 A
1 A
8847957 TCTGATCAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (34 bp):
AAAACATGGACAACCATTATTTGAAATTTAGACT
Found at i:8849467 original size:2 final size:2
Alignment explanation
Indices: 8849460--8849495 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8849450 TTATACTTTC
8849460 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8849496 CATGCGATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8853695 original size:202 final size:201
Alignment explanation
Indices: 8853376--8853742 Score: 497
Period size: 202 Copynumber: 1.8 Consensus size: 201
8853366 ACGATTTACG
* *
8853376 ATTTCTAATATATCAGTATGGTAGGATAGGATTACTGAGCGCACAATAGAAATGCATCATAAATT
1 ATTTCTAATATATCAGTATGGGAGGATAGGACTACTGAGCGCACAATAGAAATGCATCATAAATT
* * ** *
8853441 TTCACCATACAGCTGAAGATTCCAGAACTGATTTACCAAATGAAGAAAAAAATTATCTCCACGTT
66 TTCACCAGACAGCTAAAGATTCCAGAACCAATTTACCAAATGAAGAAAAAAATGATCTCCAC-TT
* *
8853506 -ATTGATAAGGACAAGATGGATTATATACCTCTCAAGTCTCGACAATCCATCCATCTGGATATAT
130 CATTGATAAGGACAAGATGGAGTACATACCTCTCAAGTCTCGACAATCCATCCATCTGGATATAT
8853570 TAATACA
195 TAATACA
* * * **
8853577 ATTTCTAATATATCAGTATGGGGAGGTTAGGACTATTGAGCGTATGATA-AACATGCATCATAAA
1 ATTTCTAATATATCAGTAT-GGGAGGATAGGACTACTGAGCGCACAATAGAA-ATGCATCATAAA
** **
8853641 TTTTCACTGGACAGCTAAAGATTCGGGAACCAATTTAACCAAATGAAG-AAAAAATGATCTCCAC
64 TTTTCACCAGACAGCTAAAGATTCCAGAACCAATTT-ACCAAATGAAGAAAAAAATGATCTCCAC
* *
8853705 TTCATTGATGAGGACAAGATGGAGTACATAGCTCTCAA
128 TTCATTGATAAGGACAAGATGGAGTACATACCTCTCAA
8853743 CTATCCCTCT
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
201 23 0.16
202 108 0.76
203 11 0.08
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (201 bp):
ATTTCTAATATATCAGTATGGGAGGATAGGACTACTGAGCGCACAATAGAAATGCATCATAAATT
TTCACCAGACAGCTAAAGATTCCAGAACCAATTTACCAAATGAAGAAAAAAATGATCTCCACTTC
ATTGATAAGGACAAGATGGAGTACATACCTCTCAAGTCTCGACAATCCATCCATCTGGATATATT
AATACA
Found at i:8857823 original size:13 final size:14
Alignment explanation
Indices: 8857795--8857827 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8857785 TCGATTCGAT
8857795 TTAATTTTTTAAAA
1 TTAATTTTTTAAAA
*
8857809 TTAATTTTTT-TAA
1 TTAATTTTTTAAAA
8857822 TTAATT
1 TTAATT
8857828 ATTAAATCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTAATTTTTTAAAA
Found at i:8857949 original size:11 final size:11
Alignment explanation
Indices: 8857933--8857966 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
8857923 AATTTAATTT
8857933 TTTAATTTTTA
1 TTTAATTTTTA
8857944 TTTAATTTTATA
1 TTTAATTTT-TA
8857956 TTT-ATTTTTA
1 TTTAATTTTTA
8857966 T
1 T
8857967 ATATTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 14 0.64
12 5 0.23
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTAATTTTTA
Found at i:8857959 original size:12 final size:12
Alignment explanation
Indices: 8857933--8857985 Score: 63
Period size: 12 Copynumber: 4.3 Consensus size: 12
8857923 AATTTAATTT
8857933 TTTAATTTT-TA
1 TTTAATTTTATA
8857944 TTTAATTTTATA
1 TTTAATTTTATA
*
8857956 TTTATTTTTATATA
1 TTTA-ATTT-TATA
*
8857970 TTTGATTTTATA
1 TTTAATTTTATA
8857982 TTTA
1 TTTA
8857986 TATTAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 9 0.26
12 13 0.37
13 6 0.17
14 7 0.20
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (12 bp):
TTTAATTTTATA
Found at i:8858049 original size:22 final size:22
Alignment explanation
Indices: 8858007--8858049 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8857997 AATATTTAAT
*
8858007 TAATTTTAAATCAAATTAAATA
1 TAATTTTAAATCAAATCAAATA
*
8858029 TAATTTTATAT-AATATCAAAT
1 TAATTTTAAATCAA-ATCAAAT
8858050 CAAATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATTTTAAATCAAATCAAATA
Found at i:8858738 original size:27 final size:28
Alignment explanation
Indices: 8858688--8858740 Score: 83
Period size: 27 Copynumber: 1.9 Consensus size: 28
8858678 TTTCATAAAG
8858688 TCATAAATCAATGTCAAAATATGTTACT
1 TCATAAATCAATGTCAAAATATGTTACT
8858716 TCATAAATC-AT-TACAAAATATGTTA
1 TCATAAATCAATGT-CAAAATATGTTA
8858741 TCATTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.04
27 14 0.58
28 9 0.38
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (28 bp):
TCATAAATCAATGTCAAAATATGTTACT
Found at i:8858826 original size:16 final size:16
Alignment explanation
Indices: 8858788--8858827 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8858778 ATCATTAAAA
*
8858788 ATCATCGTAAATCATC
1 ATCATCATAAATCATC
*
8858804 GTCATCATAAATCATC
1 ATCATCATAAATCATC
*
8858820 ATTATCAT
1 ATCATCAT
8858828 TGGTTTATCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (16 bp):
ATCATCATAAATCATC
Found at i:8861947 original size:26 final size:27
Alignment explanation
Indices: 8861894--8861973 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
8861884 ATAAAATCAT
* * *
8861894 CACTTATAAGATTTCAACCAATCTTTTA
1 CACTTGTAAGAATTCAA-CAATCATTTA
*
8861922 CCCTTGTAA-AATTCAACAATCATTTA
1 CACTTGTAAGAATTCAACAATCATTTA
* *
8861948 CATTTGTAAGATTTCAAACAATCATT
1 CACTTGTAAGAATTC-AACAATCATT
8861974 CTTAACCAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 16 0.37
27 10 0.23
28 17 0.40
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (27 bp):
CACTTGTAAGAATTCAACAATCATTTA
Found at i:8870558 original size:40 final size:40
Alignment explanation
Indices: 8870502--8870582 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
8870492 AATCTCACAT
* *
8870502 TGGAAGAATGTGTGGATAAGGATTGATATATATATATATA
1 TGGAAGAATGTATGGATAAAGATTGATATATATATATATA
8870542 TGGAAGAATGTATGGATAAAGATTGATATATATATATATA
1 TGGAAGAATGTATGGATAAAGATTGATATATATATATATA
8870582 T
1 T
8870583 ATATTTAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (40 bp):
TGGAAGAATGTATGGATAAAGATTGATATATATATATATA
Found at i:8872096 original size:21 final size:21
Alignment explanation
Indices: 8872067--8872159 Score: 64
Period size: 21 Copynumber: 4.4 Consensus size: 21
8872057 TTTATAAATT
8872067 ATTTAAATTTAATTAAATTAA
1 ATTTAAATTTAATTAAATTAA
* *
8872088 ATTTGAATTTAATTTAATT-A
1 ATTTAAATTTAATTAAATTAA
* * * *
8872108 TTATTAAATTAAATTCAAGT-A
1 AT-TTAAATTTAATTAAATTAA
* *
8872129 ATTTAATTTATCAATAAAATTAA
1 ATTTAAATT-T-AATTAAATTAA
*
8872152 ATTCAAAT
1 ATTTAAAT
8872160 ATTTTTATAT
Statistics
Matches: 53, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
20 8 0.15
21 32 0.60
22 6 0.11
23 7 0.13
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (21 bp):
ATTTAAATTTAATTAAATTAA
Found at i:8872149 original size:32 final size:30
Alignment explanation
Indices: 8872097--8872157 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 30
8872087 AATTTGAATT
* *
8872097 TAATTTAATTATTATTAAATTAAATTCAAG
1 TAATTTAATTATAATAAAATTAAATTCAAG
8872127 TAATTTAATTTATCAATAAAATTAAATTCAA
1 TAATTTAA-TTAT-AATAAAATTAAATTCAA
8872158 ATATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 8 0.30
31 4 0.15
32 15 0.56
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (30 bp):
TAATTTAATTATAATAAAATTAAATTCAAG
Found at i:8886033 original size:30 final size:30
Alignment explanation
Indices: 8885952--8886042 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
8885942 TTTTTTTGTA
*
8885952 AAATATTTATTTTCATCTAATTGAATCTTT
1 AAATATTTATTTTCATCTAATTAAATCTTT
* *
8885982 AAACATATTT-TTGT-ACCTAATTAAATCTTT
1 -AA-ATATTTATTTTCATCTAATTAAATCTTT
*
8886012 AAATATTTATTTTCATTTAATTAAAT-TTT
1 AAATATTTATTTTCATCTAATTAAATCTTT
8886041 AA
1 AA
8886043 TTTAATGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
28 6 0.12
29 10 0.20
30 24 0.47
31 5 0.10
32 6 0.12
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (30 bp):
AAATATTTATTTTCATCTAATTAAATCTTT
Found at i:8887168 original size:30 final size:30
Alignment explanation
Indices: 8887132--8887193 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
8887122 CTTAATTTTC
* *
8887132 TTTTTTTAACATACATACGACAAATAATTA
1 TTTTTTTAACATACATACAACAAATAAGTA
* *
8887162 TTTTTTTAACATAGATATAACAAATAAGTA
1 TTTTTTTAACATACATACAACAAATAAGTA
8887192 TT
1 TT
8887194 AATAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.42
Consensus pattern (30 bp):
TTTTTTTAACATACATACAACAAATAAGTA
Found at i:8887526 original size:30 final size:29
Alignment explanation
Indices: 8887491--8887585 Score: 100
Period size: 30 Copynumber: 3.1 Consensus size: 29
8887481 TATTGCAATC
*
8887491 AATTGAAATCTTAAATATTTATTTTCATCT
1 AATTG-AATCTTAAATATTTATTTTTATCT
* * * *
8887521 AATTGAACCTTTACATATATATTTTTTACCT
1 AATTGAATC-TTAAATATTTA-TTTTTATCT
*
8887552 AATTGAATGCTTAAACATTTATTTTTATCT
1 AATTGAAT-CTTAAATATTTATTTTTATCT
8887582 AATT
1 AATT
8887586 AGCTTTTGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
29 3 0.06
30 26 0.50
31 22 0.42
32 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.49
Consensus pattern (29 bp):
AATTGAATCTTAAATATTTATTTTTATCT
Found at i:8891198 original size:57 final size:57
Alignment explanation
Indices: 8891137--8891252 Score: 164
Period size: 57 Copynumber: 2.0 Consensus size: 57
8891127 TTGGGGAGGT
* *
8891137 AAACTCCATCTCGTTTAGG-TTGGGTTGCCATGGAAA-AGGGTTTTCAATTTTTACGTG
1 AAACTCCACCTCGTTT-GGTTTGGGTCGCCAT-GAAAGAGGGTTTTCAATTTTTACGTG
* *
8891194 AAACTTCACCTCGTTTGGTTTGGGTCGCCATGAAAGAGGGTTTTTAATTTTTACGTG
1 AAACTCCACCTCGTTTGGTTTGGGTCGCCATGAAAGAGGGTTTTCAATTTTTACGTG
8891251 AA
1 AA
8891253 GACCAGAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
56 6 0.11
57 47 0.89
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (57 bp):
AAACTCCACCTCGTTTGGTTTGGGTCGCCATGAAAGAGGGTTTTCAATTTTTACGTG
Found at i:8895959 original size:18 final size:19
Alignment explanation
Indices: 8895929--8895970 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
8895919 GTTTTTATTT
8895929 TATAAAAATTTAAAAAATA
1 TATAAAAATTTAAAAAATA
8895948 TATAAAAA-TTAAAAAATA
1 TATAAAAATTTAAAAAATA
8895966 TATAA
1 TATAA
8895971 TTCAATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TATAAAAATTTAAAAAATA
Found at i:8896049 original size:18 final size:17
Alignment explanation
Indices: 8896006--8896050 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
8895996 ATTTTTTATT
8896006 TTTTAATTTAAAATTTA
1 TTTTAATTTAAAATTTA
* *
8896023 TTCTAAATTTAATATTTA
1 TT-TTAATTTAAAATTTA
8896041 TATTTAATTT
1 T-TTTAATTT
8896051 GAATTAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 2 0.09
18 20 0.87
19 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAATTTAAAATTTA
Found at i:8897513 original size:17 final size:16
Alignment explanation
Indices: 8897491--8897523 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8897481 ATATTTTGAT
8897491 AAAAAAATTTAAATAA
1 AAAAAAATTTAAATAA
*
8897507 AAAAAAATTTTAATAA
1 AAAAAAATTTAAATAA
8897523 A
1 A
8897524 TTCAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAAAATTTAAATAA
Found at i:8899287 original size:12 final size:12
Alignment explanation
Indices: 8899270--8899294 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8899260 ATATTATCTA
8899270 GAAAAAAAAAGT
1 GAAAAAAAAAGT
8899282 GAAAAAAAAAGT
1 GAAAAAAAAAGT
8899294 G
1 G
8899295 GGCTTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (12 bp):
GAAAAAAAAAGT
Found at i:8904717 original size:2 final size:2
Alignment explanation
Indices: 8904710--8904743 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8904700 TCCTTGAGGT
8904710 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8904744 ACACACACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8904748 original size:2 final size:2
Alignment explanation
Indices: 8904743--8904774 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8904733 CTCTCTCTCT
8904743 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8904775 AGCACCCCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8908659 original size:24 final size:24
Alignment explanation
Indices: 8908632--8908687 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
8908622 TGTATGACAG
*
8908632 TTATTTAAATTTAGT-GTCGTAATT
1 TTATTTAAATTTAGTACT-GTAATT
*
8908656 TTATTTAAGTTTAGTACTGTAATT
1 TTATTTAAATTTAGTACTGTAATT
*
8908680 TGATTTAA
1 TTATTTAA
8908688 TTTTGACTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 27 0.96
25 1 0.04
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (24 bp):
TTATTTAAATTTAGTACTGTAATT
Found at i:8908905 original size:4 final size:4
Alignment explanation
Indices: 8908891--8908924 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8908881 GCAGCAAAAC
* *
8908891 CTCT TTCT CTCT CTCT CTCT CTCT CTCT CGCT CT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CT
8908925 GCCTACAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (4 bp):
CTCT
Found at i:8908905 original size:6 final size:6
Alignment explanation
Indices: 8908891--8908924 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8908881 GCAGCAAAAC
* *
8908891 CTCTTT CTCTCT CTCTCT CTCTCT CTCTCG CTCT
1 CTCTCT CTCTCT CTCTCT CTCTCT CTCTCT CTCT
8908925 GCCTACAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (6 bp):
CTCTCT
Found at i:8912410 original size:13 final size:13
Alignment explanation
Indices: 8912392--8912416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8912382 TCTTTTTCTT
8912392 CCCTTCTTGATTG
1 CCCTTCTTGATTG
8912405 CCCTTCTTGATT
1 CCCTTCTTGATT
8912417 ATCTTTGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.12, T:0.48
Consensus pattern (13 bp):
CCCTTCTTGATTG
Found at i:8913968 original size:26 final size:26
Alignment explanation
Indices: 8913939--8913991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8913929 AAATGGCATG
8913939 GCATTCAACTTTCTCTTTATTGAAAT
1 GCATTCAACTTTCTCTTTATTGAAAT
8913965 GCATTCAACTTTCTCTTTATTGAAAT
1 GCATTCAACTTTCTCTTTATTGAAAT
8913991 G
1 G
8913992 AATTTGATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.45
Consensus pattern (26 bp):
GCATTCAACTTTCTCTTTATTGAAAT
Found at i:8915639 original size:3 final size:3
Alignment explanation
Indices: 8915631--8915659 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8915621 AGCAGTCTCG
8915631 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
8915660 CTCACACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:8922317 original size:76 final size:77
Alignment explanation
Indices: 8922185--8922341 Score: 214
Period size: 76 Copynumber: 2.1 Consensus size: 77
8922175 AAATATTTAT
* * *
8922185 TTATAGAATATGATTATTAAATATTATTATCTTATTATATTTTTAATGTTGCAATAGTACTAAAT
1 TTATAGAATATGATTATTAAATATTATTATCTTATTATATTTTTAATGTTGCAATAGCACCAAAA
*
8922250 TTCATTCTTGAA
66 TTCATTCTTAAA
*
8922262 TTAT-GAATATGATTATTAACTATATTATATAT-TTA-T-TATTTTTAATGTTGTAATAGCACCA
1 TTATAGAATATGATTATTAA--ATATTAT-TATCTTATTATATTTTTAATGTTGCAATAGCACCA
8922323 AAATTCATTCTTAAA
63 AAATTCATTCTTAAA
8922338 TTAT
1 TTAT
8922342 CAATTATATA
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
76 54 0.75
77 5 0.07
78 10 0.14
79 3 0.04
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (77 bp):
TTATAGAATATGATTATTAAATATTATTATCTTATTATATTTTTAATGTTGCAATAGCACCAAAA
TTCATTCTTAAA
Found at i:8922906 original size:24 final size:26
Alignment explanation
Indices: 8922863--8922915 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 26
8922853 ACAACGAGAT
8922863 TAAAAAATAAATAATAATAAA-ATTAA
1 TAAAAAATAAATAATAATAAATA-TAA
*
8922889 TAAAAAATATA-AAT-ATAAATATAA
1 TAAAAAATAAATAATAATAAATATAA
8922913 TAA
1 TAA
8922916 TGATAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 11 0.44
25 4 0.16
26 10 0.40
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (26 bp):
TAAAAAATAAATAATAATAAATATAA
Found at i:8922950 original size:19 final size:18
Alignment explanation
Indices: 8922915--8922951 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8922905 AAATATAATA
8922915 ATGATAATAAATTTTTTT
1 ATGATAATAAATTTTTTT
*
8922933 ATGATAATTAATTTTTTT
1 ATGATAATAAATTTTTTT
8922951 A
1 A
8922952 AATAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
ATGATAATAAATTTTTTT
Found at i:8923061 original size:27 final size:27
Alignment explanation
Indices: 8923009--8923062 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
8922999 TTTAAAATTA
* * *
8923009 TATTAATTGAATTATATTATTTATTTT
1 TATTAATCGAATTAAATTATTAATTTT
8923036 TATTAATCGAATTAAATT-TATAATTTT
1 TATTAATCGAATTAAATTAT-TAATTTT
8923063 AAAAATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (27 bp):
TATTAATCGAATTAAATTATTAATTTT
Found at i:8923402 original size:22 final size:21
Alignment explanation
Indices: 8923362--8923420 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
8923352 AAAAATTTTT
* * *
8923362 TAAAATTATTTTTATTAATTGA
1 TAAAATTA-ATTTAATAATTAA
8923384 TCAAAATTAATTTAATAATTAA
1 T-AAAATTAATTTAATAATTAA
*
8923406 TAAAATTAAATTAAT
1 TAAAATTAATTTAAT
8923421 TCAATCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 13 0.41
22 12 0.38
23 7 0.22
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAATTAATTTAATAATTAA
Found at i:8924035 original size:16 final size:16
Alignment explanation
Indices: 8924014--8924061 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
8924004 ATATAATACA
8924014 ATAATATAATATAAAT
1 ATAATATAATATAAAT
*
8924030 ATAATAAAATATAAAAT
1 ATAATATAATAT-AAAT
*
8924047 ATAAAAATAATATAA
1 AT-AATATAATATAA
8924062 TTTAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 8 0.30
18 8 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATATAATATAAAT
Found at i:8924051 original size:23 final size:23
Alignment explanation
Indices: 8924002--8924074 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
8923992 TAATAATTTA
* *
8924002 AAATATAATACAATAATATAATAT
1 AAATATAATAAAAT-ATAAAATAT
8924026 AAATATAATAAAATATAAAATAT
1 AAATATAATAAAATATAAAATAT
* * *
8924049 AAAAATAATATAATTTAAAATTAT
1 AAATATAATAAAATATAAAA-TAT
8924073 AA
1 AA
8924075 TAATTATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 25 0.58
24 18 0.42
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATATAATAAAATATAAAATAT
Found at i:8924209 original size:43 final size:38
Alignment explanation
Indices: 8924124--8924197 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
8924114 TAATAATTTT
8924124 ATATAGATATAAATTATAAAATATAATTTTTATATAAA
1 ATATAGATATAAATTATAAAATATAATTTTTATATAAA
* *
8924162 ATATA-ATATAAATATATGAATTATAATATTTTATAT
1 ATATAGATATAAAT-TATAAAATATAAT-TTTTATAT
8924198 GACATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 8 0.25
38 16 0.50
39 8 0.25
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (38 bp):
ATATAGATATAAATTATAAAATATAATTTTTATATAAA
Found at i:8929612 original size:23 final size:23
Alignment explanation
Indices: 8929586--8929630 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
8929576 ACCTCAGTGA
8929586 CCCTTTTATTATGTTCGATGTGG
1 CCCTTTTATTATGTTCGATGTGG
8929609 CCCTTTTATTATGTTCGATGTG
1 CCCTTTTATTATGTTCGATGTG
8929631 AGATTCAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.20, T:0.49
Consensus pattern (23 bp):
CCCTTTTATTATGTTCGATGTGG
Found at i:8933439 original size:16 final size:16
Alignment explanation
Indices: 8933406--8933440 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8933396 AAAATACAAT
*
8933406 AAAATAATATGATATA
1 AAAATAATATAATATA
*
8933422 AAAATAATATAATTTA
1 AAAATAATATAATATA
8933438 AAA
1 AAA
8933441 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AAAATAATATAATATA
Found at i:8933560 original size:30 final size:30
Alignment explanation
Indices: 8933495--8933588 Score: 104
Period size: 30 Copynumber: 3.1 Consensus size: 30
8933485 TATTTTATAT
*
8933495 TTTTATAT-TAATATAAATTATAATATATAAT-
1 TTTTATATAAAATAT-AA-TATAA-ATATAATA
8933526 TTTTATATAAAATATAATATAAATATAATA
1 TTTTATATAAAATATAATATAAATATAATA
* * *
8933556 TTTTATATAACATAAAATATAAAT-TATTA
1 TTTTATATAAAATATAATATAAATATAATA
8933585 TTTT
1 TTTT
8933589 TTGTTTAAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
29 15 0.26
30 27 0.47
31 10 0.18
32 5 0.09
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (30 bp):
TTTTATATAAAATATAATATAAATATAATA
Found at i:8933575 original size:12 final size:12
Alignment explanation
Indices: 8933503--8933577 Score: 62
Period size: 12 Copynumber: 6.2 Consensus size: 12
8933493 ATTTTTATAT
*
8933503 TAATATAAATTA
1 TAATATAAAATA
* *
8933515 TAATATATAATTT
1 TAATATA-AAATA
*
8933528 TTATATAAAATA
1 TAATATAAAATA
8933540 TAATAT-AAATA
1 TAATATAAAATA
***
8933551 TAATATTTTATA
1 TAATATAAAATA
*
8933563 TAACATAAAATA
1 TAATATAAAATA
8933575 TAA
1 TAA
8933578 ATTATTATTT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
11 11 0.22
12 29 0.58
13 10 0.20
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (12 bp):
TAATATAAAATA
Found at i:8940451 original size:21 final size:21
Alignment explanation
Indices: 8940399--8940451 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
8940389 TAAAACTCAA
8940399 TTTTTTATTTTTATTATACTC
1 TTTTTTATTTTTATTATACTC
8940420 TTTATTT-TTTTTATTCATACT-
1 TTT-TTTATTTTTATT-ATACTC
8940441 TTTTTTATTTT
1 TTTTTTATTTT
8940452 CTGAAATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.10
21 18 0.62
22 8 0.28
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTATTTTTATTATACTC
Found at i:8940928 original size:18 final size:19
Alignment explanation
Indices: 8940896--8940931 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8940886 TAGGTAAAAT
*
8940896 TTTATTTTCTATAAAATAC
1 TTTATTTCCTATAAAATAC
8940915 TTTATTTCCT-TAAAATA
1 TTTATTTCCTATAAAATA
8940932 ATGTCTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTATTTCCTATAAAATAC
Found at i:8941239 original size:17 final size:18
Alignment explanation
Indices: 8941199--8941239 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8941189 ATAATAAAAT
* *
8941199 AATTTATTTATTAGTTAA
1 AATTTATTTATTACTCAA
8941217 AA-TTATTT-TTACTCAA
1 AATTTATTTATTACTCAA
8941233 AATTTAT
1 AATTTAT
8941240 ATAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 8 0.40
17 10 0.50
18 2 0.10
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (18 bp):
AATTTATTTATTACTCAA
Found at i:8942498 original size:34 final size:34
Alignment explanation
Indices: 8942426--8942509 Score: 91
Period size: 34 Copynumber: 2.5 Consensus size: 34
8942416 ACAATGAAGT
* *
8942426 CTTT-GAAAATAAATTTTTGATATATTAAAAAGG
1 CTTTCGAAAATAAATTTTTGAAATATGAAAAAGG
* * *
8942459 TTTTCGAAAATGAATTTTTGAAATATCGCAAAA-G
1 CTTTCGAAAATAAATTTTTGAAATAT-GAAAAAGG
*
8942493 CTTTCGATAATAAATTT
1 CTTTCGAAAATAAATTT
8942510 ATGGTAACTT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
33 3 0.07
34 34 0.83
35 4 0.10
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (34 bp):
CTTTCGAAAATAAATTTTTGAAATATGAAAAAGG
Found at i:8947354 original size:74 final size:74
Alignment explanation
Indices: 8947265--8947411 Score: 215
Period size: 74 Copynumber: 2.0 Consensus size: 74
8947255 AATGACAGAA
** **
8947265 AAGGAAATAAAATCAACGAACATGCTGTTCACATTCAAATCTAAAGATAATGTATATGATAGACG
1 AAGGAAATAAAATCAACGAACATGCCATTCACATTCAAATCTAAAGATAACATATATGATAGA-G
8947330 -CTCAAATAT
65 ACTCAAATAT
* * *
8947339 AAGGAAATAAAATCAATGAACTTGCCATTCACATTCAAATCTAAAGATGACATATATGATAGAGA
1 AAGGAAATAAAATCAACGAACATGCCATTCACATTCAAATCTAAAGATAACATATATGATAGAGA
8947404 CTCAAATA
66 CTCAAATA
8947412 GAGTGCATGC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 1 0.02
74 64 0.98
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (74 bp):
AAGGAAATAAAATCAACGAACATGCCATTCACATTCAAATCTAAAGATAACATATATGATAGAGA
CTCAAATAT
Found at i:8947931 original size:6 final size:6
Alignment explanation
Indices: 8947910--8947951 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
8947900 TAATATGCAA
* *
8947910 TTGAAT ATGCAT TTGAAT TTGAAT TTGAAT TTGAAT TTGAAT
1 TTGAAT TTGAAT TTGAAT TTGAAT TTGAAT TTGAAT TTGAAT
8947952 ACAAAAACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (6 bp):
TTGAAT
Found at i:8950419 original size:24 final size:24
Alignment explanation
Indices: 8950374--8950419 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
8950364 AAATTCAATC
* **
8950374 TAAATTTAATATATATTTAATATT
1 TAAATTTAATATAAATCAAATATT
*
8950398 TAAATTTAATTTAAATCAAATA
1 TAAATTTAATATAAATCAAATA
8950420 AAAAAAATTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAATTTAATATAAATCAAATATT
Found at i:8950689 original size:31 final size:31
Alignment explanation
Indices: 8950654--8950717 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
8950644 AAGCCTTTTG
*
8950654 AAGTCAAATGATTAAAAATATTTGAGAAGAT
1 AAGTCAAATGATTAAAAATATTTGAAAAGAT
* *
8950685 AAGTCTAATGATTGAAAATATTTGAAAAGAT
1 AAGTCAAATGATTAAAAATATTTGAAAAGAT
8950716 AA
1 AA
8950718 AAGATTTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.30
Consensus pattern (31 bp):
AAGTCAAATGATTAAAAATATTTGAAAAGAT
Found at i:8961955 original size:15 final size:16
Alignment explanation
Indices: 8961926--8961957 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
8961916 GTGAAATTAA
8961926 ATTAAAATAATTTTTT
1 ATTAAAATAATTTTTT
8961942 ATTAAAAT-ATTTTTT
1 ATTAAAATAATTTTTT
8961957 A
1 A
8961958 ATTATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTAAAATAATTTTTT
Found at i:8961961 original size:16 final size:17
Alignment explanation
Indices: 8961925--8961961 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
8961915 AGTGAAATTA
8961925 AATTAAAATAATTTTTT
1 AATTAAAATAATTTTTT
8961942 -ATTAAAAT-ATTTTTT
1 AATTAAAATAATTTTTT
8961957 AATTA
1 AATTA
8961962 TAATTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATTAAAATAATTTTTT
Found at i:8961967 original size:22 final size:23
Alignment explanation
Indices: 8961942--8962003 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 23
8961932 ATAATTTTTT
* *
8961942 ATTAAAAT-ATTTTTTAATTATA
1 ATTATAATAATTTTTTAATTACA
8961964 ATTATAATAATTTTTTTAATTACA
1 ATTATAATAA-TTTTTTAATTACA
8961988 ATTATAATAATTTTTT
1 ATTATAATAATTTTTT
8962004 TTTAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 7 0.19
23 7 0.19
24 22 0.61
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTATAATAATTTTTTAATTACA
Found at i:8961983 original size:24 final size:24
Alignment explanation
Indices: 8961951--8962004 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
8961941 TATTAAAATA
*
8961951 TTTTTTAATTATAATTATAATAAT
1 TTTTTTAATTACAATTATAATAAT
8961975 TTTTTTAATTACAATTATAATAAT
1 TTTTTTAATTACAATTATAATAAT
8961999 TTTTTT
1 TTTTTT
8962005 TTAATTTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTTTAATTACAATTATAATAAT
Found at i:8963861 original size:13 final size:13
Alignment explanation
Indices: 8963845--8963880 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
8963835 AAATATTAAT
8963845 TTTATTAAAATTA
1 TTTATTAAAATTA
*
8963858 TTTAATATAAATTA
1 TTTATTA-AAATTA
8963872 TTTATTAAA
1 TTTATTAAA
8963881 TTTTTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTATTAAAATTA
Found at i:8963880 original size:27 final size:27
Alignment explanation
Indices: 8963845--8963899 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
8963835 AAATATTAAT
8963845 TTTATTAAAATTATTTAAT-ATAAATTA
1 TTTATTAAAATTATTTAATCAT-AATTA
* *
8963872 TTTATTAAATTTTTTTAATCATAATTA
1 TTTATTAAAATTATTTAATCATAATTA
8963899 T
1 T
8963900 AATAATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (27 bp):
TTTATTAAAATTATTTAATCATAATTA
Found at i:8963911 original size:22 final size:22
Alignment explanation
Indices: 8963883--8963932 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
8963873 TTATTAAATT
* *
8963883 TTTTTAATCATAATTATAATAA
1 TTTTTAATCACAATTACAATAA
*
8963905 TTTTTAATTACAATTACAATAA
1 TTTTTAATCACAATTACAATAA
*
8963927 ATTTTA
1 TTTTTA
8963933 TTATCATTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTTTAATCACAATTACAATAA
Found at i:8964424 original size:23 final size:23
Alignment explanation
Indices: 8964388--8964447 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
8964378 AGATTAAAAA
* * *
8964388 TAATAATAATATTTATTATAATTT
1 TAATAA-AAAATTTACTATAATTG
* *
8964412 TGATTAAAAATTTACTATAATTG
1 TAATAAAAAATTTACTATAATTG
8964435 TAATAAAAAATTT
1 TAATAAAAAATTT
8964448 TGTATTGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (23 bp):
TAATAAAAAATTTACTATAATTG
Found at i:8969012 original size:20 final size:21
Alignment explanation
Indices: 8968986--8969087 Score: 104
Period size: 20 Copynumber: 4.8 Consensus size: 21
8968976 ATCTATTTAT
*
8968986 TAATTTAATTTATATAATAAA
1 TAATTTAATATATATAATAAA
* *
8969007 -AATTTAAAATATAT-ATAAT
1 TAATTTAATATATATAATAAA
8969026 TAAATTTAAT-TATAT-ATAAA
1 T-AATTTAATATATATAATAAA
8969046 TTAATTTACATATATATAAATAAA
1 -TAATTTA-ATATATAT-AATAAA
8969070 TAATTTATATATATATAA
1 TAATTTA-ATATATATAA
8969088 ATTCGAATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
19 4 0.06
20 27 0.40
21 10 0.15
22 7 0.10
23 15 0.22
24 5 0.07
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTTAATATATATAATAAA
Found at i:8969032 original size:36 final size:39
Alignment explanation
Indices: 8968961--8969089 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 39
8968951 TAAATTAAAA
* *
8968961 ATAAATAAATTTTAAATCTAT-TTATT-AATTTAATTTATAT
1 ATAAAT-AA-TTTAAATATATATAATTAAATTTAA-TTATAT
8969001 AATAAA-AATTTAAAATATATATAATTAAATTTAATTATAT
1 -ATAAATAATTT-AAATATATATAATTAAATTTAATTATAT
* * *
8969041 ATAAATTAATTTACATATATATAAATAAATAATTTATATATAT
1 ATAAA-TAATTTAAATATATATAATTAAAT--TTAAT-TATAT
8969084 ATAAAT
1 ATAAAT
8969090 TCGAATCAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
38 3 0.04
39 14 0.19
40 26 0.35
41 17 0.23
42 5 0.07
43 10 0.13
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (39 bp):
ATAAATAATTTAAATATATATAATTAAATTTAATTATAT
Found at i:8969039 original size:40 final size:40
Alignment explanation
Indices: 8968987--8969087 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 40
8968977 TCTATTTATT
*
8968987 AATTTAATTTATATAATAAA-AATTTAAAATATATATAATTA
1 AATTTAATTTATAT-ATAAATAATTT-AAATATATATAAATA
*
8969028 AATTTAA-TTATATATAAATTAATTTACATATATATAAATA
1 AATTTAATTTATATATAAA-TAATTTAAATATATATAAATA
*
8969068 AA--TAATTTATATATATATAA
1 AATTTAATTTATATATAAATAA
8969088 ATTCGAATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
38 6 0.11
39 15 0.28
40 21 0.39
41 12 0.22
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (40 bp):
AATTTAATTTATATATAAATAATTTAAATATATATAAATA
Found at i:8971603 original size:16 final size:16
Alignment explanation
Indices: 8971578--8971611 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8971568 GGAAAAATAA
8971578 TTTTTCTTTTTAGAAT
1 TTTTTCTTTTTAGAAT
* *
8971594 TTTTTTTTTTTATAAT
1 TTTTTCTTTTTAGAAT
8971610 TT
1 TT
8971612 GAATCTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTCTTTTTAGAAT
Found at i:8972574 original size:34 final size:33
Alignment explanation
Indices: 8972502--8972574 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
8972492 TGAAGTTTAT
* *
8972502 ATTAAATATATAATTTATAATTTATATTAATAC
1 ATTAAATATAAAATTTATAATTTATATTAAAAC
* * *
8972535 ATTAAATATAAAATTTTTTTATTTTTATTAAAAC
1 ATTAAATATAAAA-TTTATAATTTATATTAAAAC
*
8972569 TTTAAA
1 ATTAAA
8972575 AATCGAGTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (33 bp):
ATTAAATATAAAATTTATAATTTATATTAAAAC
Found at i:8972929 original size:21 final size:22
Alignment explanation
Indices: 8972904--8972971 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 22
8972894 AAATTTAATA
8972904 AAATTATATTTAAT-TATATAT
1 AAATTATATTTAATATATATAT
8972925 AAATTA-ATTT-ATATATATAT
1 AAATTATATTTAATATATATAT
*
8972945 AAA--ATATTATATTATATATAT
1 AAATTATATT-TAATATATATAT
8972966 AAATTA
1 AAATTA
8972972 AAATCGAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
18 1 0.03
19 5 0.12
20 15 0.38
21 18 0.45
23 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAATTATATTTAATATATATAT
Found at i:8974678 original size:18 final size:19
Alignment explanation
Indices: 8974646--8974690 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
8974636 TTTGTAAGAT
8974646 AAAAAATGTAGTATTTGTTA
1 AAAAAATGTAGTATTT-TTA
8974666 AAAAAATG-A-TATTTTTA
1 AAAAAATGTAGTATTTTTA
8974683 AAATAAAT
1 AAA-AAAT
8974691 ATGTTCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.25
18 9 0.38
19 1 0.04
20 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (19 bp):
AAAAAATGTAGTATTTTTA
Found at i:8974742 original size:20 final size:20
Alignment explanation
Indices: 8974705--8974742 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8974695 TCAAAATTCA
*
8974705 ATAAAAATGATATTTTTAAG
1 ATAAAAATGATATATTTAAG
8974725 ATAAAAATG-TAATATTTA
1 ATAAAAATGAT-ATATTTA
8974743 TTAAAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (20 bp):
ATAAAAATGATATATTTAAG
Found at i:8974814 original size:20 final size:21
Alignment explanation
Indices: 8974789--8974842 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
8974779 AAGATAACGT
*
8974789 TTTTTAAGATAAAAATGT-AA
1 TTTTTAAGATAAAAATATGAA
* *
8974809 TTTTT-A-TTAAAAATATGAC
1 TTTTTAAGATAAAAATATGAA
8974828 TTTTTAAGATAAAAA
1 TTTTTAAGATAAAAA
8974843 AATATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 8 0.30
19 7 0.26
20 6 0.22
21 6 0.22
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (21 bp):
TTTTTAAGATAAAAATATGAA
Found at i:8976212 original size:17 final size:17
Alignment explanation
Indices: 8976186--8976221 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8976176 TGACTTTTTT
* *
8976186 ATTTTTTAATTAAATAA
1 ATTTTATAATAAAATAA
8976203 ATTTTATAATAAAATAA
1 ATTTTATAATAAAATAA
8976220 AT
1 AT
8976222 CTATTGATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTTATAATAAAATAA
Found at i:8976471 original size:13 final size:13
Alignment explanation
Indices: 8976426--8976486 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
8976416 TAAAATTTTT
8976426 TTAATTT-ATATA
1 TTAATTTAATATA
*
8976438 TT-ATTATATTA-A
1 TTAATT-TAATATA
*
8976450 TTAAATTAATATA
1 TTAATTTAATATA
* *
8976463 TTAATTTAAGAGA
1 TTAATTTAATATA
8976476 TTAATTTAATA
1 TTAATTTAATA
8976487 AAAGTATTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
11 3 0.08
12 10 0.26
13 25 0.66
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TTAATTTAATATA
Found at i:8978916 original size:16 final size:16
Alignment explanation
Indices: 8978897--8978947 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
8978887 ACTATTAACA
8978897 AATTTAATTATTCATG
1 AATTTAATTATTCATG
* *
8978913 AATTTCA-TATTTCATC
1 AATTTAATTA-TTCATG
* *
8978929 AATTTAATTGTTAATG
1 AATTTAATTATTCATG
8978945 AAT
1 AAT
8978948 ATACTTAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
15 2 0.07
16 24 0.89
17 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (16 bp):
AATTTAATTATTCATG
Found at i:8982958 original size:2 final size:2
Alignment explanation
Indices: 8982951--8982992 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8982941 TTGTCTCCTT
8982951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8982993 GAGAGAGAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8982997 original size:2 final size:2
Alignment explanation
Indices: 8982992--8983034 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8982982 ATATATATAT
8982992 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8983034 A
1 A
8983035 AATAATCCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8983870 original size:29 final size:29
Alignment explanation
Indices: 8983838--8983894 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8983828 TAACAGATTC
*
8983838 AAAATTTAAATATCACT-TTAAAAATTTTT
1 AAAATTTAAAGATCA-TATTAAAAATTTTT
*
8983867 AAAATTTAAAGATCATATTAAATATTTT
1 AAAATTTAAAGATCATATTAAAAATTTT
8983895 ATTATAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (29 bp):
AAAATTTAAAGATCATATTAAAAATTTTT
Done.