Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 63 of 64
Found at i:10905420 original size:28 final size:28
Alignment explanation
Indices: 10905380--10905434 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
10905370 AAGGCCAGCT
10905380 GTAATGTTACCAATAAAAAAGAGAAGCC
1 GTAATGTTACCAATAAAAAAGAGAAGCC
10905408 GTAATGTTACCAATAAAAAAGAGAAGC
1 GTAATGTTACCAATAAAAAAGAGAAGC
10905435 TTTCTGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.18
Consensus pattern (28 bp):
GTAATGTTACCAATAAAAAAGAGAAGCC
Found at i:10911780 original size:63 final size:61
Alignment explanation
Indices: 10911690--10911859 Score: 173
Period size: 63 Copynumber: 2.7 Consensus size: 61
10911680 TTATTTTTTG
* * **
10911690 AAATTATTTAAGATATTTTTTGTCAAAAAACACTTTAAATAATCTCCTTCAATTTTTTGT-AAA
1 AAATTATTTAAGA-AGTTTTTGCCAAAAAA-ACTTTAAATAATCTCAATCAATTTTTT-TAAAA
* ** *
10911753 AAATTATTTAAGAGGTTTTTGACCAAAAAAGGTCTTAAATAATGTCAATCAATTTTTTTAAAA
1 AAATTATTTAAGAAGTTTTTG-CCAAAAAAACT-TTAAATAATCTCAATCAATTTTTTTAAAA
*
10911816 AAATTATTTAA-AACGTTTTTGGCCAAAAAATATTTTAAATAATC
1 AAATTATTTAAGAA-GTTTTT-GCCAAAAAA-ACTTTAAATAATC
10911860 CCAAAAAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
62 9 0.10
63 78 0.88
64 2 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (61 bp):
AAATTATTTAAGAAGTTTTTGCCAAAAAAACTTTAAATAATCTCAATCAATTTTTTTAAAA
Found at i:10922532 original size:24 final size:24
Alignment explanation
Indices: 10922496--10922555 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
10922486 ATTTTTAATT
* * *
10922496 TTTTTAAAATTTTAAATCATGTTA
1 TTTTTATATTTTTAAATCATATTA
* * *
10922520 TTTTTATATTTTTTATTTATATTA
1 TTTTTATATTTTTAAATCATATTA
*
10922544 TATTTATATTTT
1 TTTTTATATTTT
10922556 ATTATCATGT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTTATATTTTTAAATCATATTA
Found at i:10922546 original size:18 final size:16
Alignment explanation
Indices: 10922523--10922574 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 16
10922513 CATGTTATTT
*
10922523 TTATATTTTTTATTTATA
1 TTATA-TTTATATTT-TA
10922541 TTATATTTATATTTTA
1 TTATATTTATATTTTA
*
10922557 TTATCATGTCATATTTTA
1 TTAT-AT-TTATATTTTA
10922575 AATTATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 6 0.20
17 10 0.33
18 14 0.47
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATATTTATATTTTA
Found at i:10922570 original size:24 final size:23
Alignment explanation
Indices: 10922511--10922572 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
10922501 AAAATTTTAA
*
10922511 ATCATGTTATTTTTATATTTTTT
1 ATCATGTTATATTTATATTTTTT
* *
10922534 ATTTATATTATATTTATATTTTATT
1 A-TCATGTTATATTTATATTTT-TT
*
10922559 ATCATGTCATATTT
1 ATCATGTTATATTT
10922573 TAAATTATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.03
24 27 0.87
25 3 0.10
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (23 bp):
ATCATGTTATATTTATATTTTTT
Found at i:10931804 original size:19 final size:16
Alignment explanation
Indices: 10931769--10931807 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 16
10931759 TTTGATTTAC
10931769 TAATTTTTAATTTTTT
1 TAATTTTTAATTTTTT
10931785 TAATTTTTATATATTCTTT
1 TAATTTTTA-AT-TT-TTT
10931804 TAAT
1 TAAT
10931808 ATAAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 2 0.10
18 2 0.10
19 7 0.35
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTTTTAATTTTTT
Found at i:10936980 original size:6 final size:6
Alignment explanation
Indices: 10936971--10937010 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
10936961 GAGGGTTTAA
*
10936971 GGGGGT GGGGTT GGGGTT GGGGTT GGGGTT GGGGTT GGGG
1 GGGGTT GGGGTT GGGGTT GGGGTT GGGGTT GGGGTT GGGG
10937011 AAGGAGTGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.72, T:0.28
Consensus pattern (6 bp):
GGGGTT
Found at i:10947625 original size:15 final size:15
Alignment explanation
Indices: 10947588--10947628 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
10947578 TTGTGTTTAT
* *
10947588 TTAT-ATTTATTTGT
1 TTATGATTTGTTTGG
10947602 TTA-GATTTGTTTGG
1 TTATGATTTGTTTGG
10947616 TTATGATTTGTTT
1 TTATGATTTGTTT
10947629 ATTGTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (15 bp):
TTATGATTTGTTTGG
Found at i:10956805 original size:14 final size:13
Alignment explanation
Indices: 10956780--10956818 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
10956770 TGTAGAATTT
10956780 AAAATTACAAAATA
1 AAAATTA-AAAATA
*
10956794 GAAATTTAAAAATA
1 -AAAATTAAAAATA
10956808 AAAATTAAAAA
1 AAAATTAAAAA
10956819 GTTTTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 10 0.45
14 6 0.27
15 6 0.27
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAATTAAAAATA
Found at i:10957373 original size:3 final size:3
Alignment explanation
Indices: 10957365--10957392 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10957355 TTATTGTTTG
10957365 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10957393 CAAAACTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:10957503 original size:15 final size:14
Alignment explanation
Indices: 10957485--10957514 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
10957475 CTAAGTGTTT
10957485 TAATTTATTTGATTA
1 TAATTTATTT-ATTA
10957500 TAATTTATTTATTA
1 TAATTTATTTATTA
10957514 T
1 T
10957515 TTATGAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (14 bp):
TAATTTATTTATTA
Found at i:10957545 original size:24 final size:24
Alignment explanation
Indices: 10957502--10957562 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
10957492 TTTGATTATA
10957502 ATTTATTTAT-TATTTATGAACAT
1 ATTTATTTATATATTTATGAACAT
* * *
10957525 ATTTTTTTATATATTTGTGAACTT
1 ATTTATTTATATATTTATGAACAT
*
10957549 ATTTGTTTA-ATATT
1 ATTTATTTATATATT
10957563 CACAAACAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 14 0.42
24 19 0.58
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.61
Consensus pattern (24 bp):
ATTTATTTATATATTTATGAACAT
Found at i:10957601 original size:22 final size:23
Alignment explanation
Indices: 10957549--10957604 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 23
10957539 TTGTGAACTT
10957549 ATTTGTTTAATATTCACAAACAA
1 ATTTGTTTAATATTCACAAACAA
* *
10957572 GTTTGTTTAATATTCA-AAATAA
1 ATTTGTTTAATATTCACAAACAA
10957594 ATTTGTTTAAT
1 ATTTGTTTAAT
10957605 TTAATCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (23 bp):
ATTTGTTTAATATTCACAAACAA
Found at i:10958716 original size:14 final size:14
Alignment explanation
Indices: 10958697--10958740 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
10958687 TAAAATATAC
10958697 AAATAATTTAAAAT
1 AAATAATTTAAAAT
*
10958711 AAATAATTATAAATT
1 AAATAATT-TAAAAT
*
10958726 ATAT-ATTTAAAAT
1 AAATAATTTAAAAT
10958739 AA
1 AA
10958741 TTTTAATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
13 6 0.24
14 11 0.44
15 8 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATAATTTAAAAT
Found at i:10960993 original size:15 final size:16
Alignment explanation
Indices: 10960968--10960998 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10960958 GTTGTTGTTG
10960968 TTGTCTTTTTTTTCTT
1 TTGTCTTTTTTTTCTT
10960984 TTGT-TTTTTTTTCTT
1 TTGTCTTTTTTTTCTT
10960999 GTGCCAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (16 bp):
TTGTCTTTTTTTTCTT
Found at i:10962756 original size:3 final size:3
Alignment explanation
Indices: 10962750--10962824 Score: 77
Period size: 3 Copynumber: 25.7 Consensus size: 3
10962740 ATTATTAAAC
* **
10962750 AAT AAT AAT AAT AA- AAT TA- AAT GTT AAT AA- AA- AACT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT -AAT
10962793 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10962825 AATTTTATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
2 7 0.11
3 49 0.80
4 5 0.08
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10962985 original size:30 final size:29
Alignment explanation
Indices: 10962944--10963107 Score: 147
Period size: 30 Copynumber: 5.5 Consensus size: 29
10962934 TTCCAAAACT
* *
10962944 AAAACCATAAACCCTTTAAATCCTAATATC
1 AAAACCCTAAACCCTTTAAA-CCTAAAATC
* *
10962974 AAAACCCTAAA--CTTCAAACTCTAAAATT
1 AAAACCCTAAACCCTTTAAAC-CTAAAATC
* *
10963002 AAAACCCTAAAGCCTTTAAACCCTAAAAAC
1 AAAACCCTAAACCCTTTAAA-CCTAAAATC
*
10963032 TAAAA-CCTCAAATCCTTTAAACCCTAAAA-C
1 -AAAACCCT-AAACCCTTTAAA-CCTAAAATC
*
10963062 TAAAACCCTAAACCTTTTAAACTCTAAAATC
1 -AAAACCCTAAACCCTTTAAAC-CTAAAATC
*
10963093 AAAACTCTAAACCCT
1 AAAACCCTAAACCCT
10963108 AAACTCTAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.01
28 23 0.20
29 1 0.01
30 60 0.53
31 28 0.25
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.24
Consensus pattern (29 bp):
AAAACCCTAAACCCTTTAAACCTAAAATC
Found at i:10962992 original size:14 final size:14
Alignment explanation
Indices: 10962974--10963074 Score: 64
Period size: 14 Copynumber: 6.9 Consensus size: 14
10962964 TCCTAATATC
10962974 AAAACCCTAAACTT
1 AAAACCCTAAACTT
* * *
10962988 CAAACTCTAAAATT
1 AAAACCCTAAACTT
10963002 AAAACCCTAAAGCCTT
1 AAAACCCTAAA--CTT
*
10963018 TAAACCCTAAAAAC-T
1 AAAACCCT--AAACTT
10963033 AAAA-CCTCAAATCCTT
1 AAAACCCT-AAA--CTT
*
10963049 TAAACCCTAAAAC-T
1 AAAACCCT-AAACTT
10963063 AAAACCCTAAAC
1 AAAACCCTAAAC
10963075 CTTTTAAACT
Statistics
Matches: 67, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
13 7 0.10
14 31 0.46
15 6 0.09
16 14 0.21
17 6 0.09
18 3 0.04
ACGTcount: A:0.50, C:0.29, G:0.01, T:0.21
Consensus pattern (14 bp):
AAAACCCTAAACTT
Found at i:10963099 original size:14 final size:14
Alignment explanation
Indices: 10963080--10963122 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
10963070 TAAACCTTTT
*
10963080 AAACTCTAAAATCA
1 AAACTCTAAAACCA
* *
10963094 AAACTCTAAACCCT
1 AAACTCTAAAACCA
10963108 AAACTCT-AAACCA
1 AAACTCTAAAACCA
10963121 AA
1 AA
10963123 TCCTAAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACTCTAAAACCA
Found at i:10963222 original size:15 final size:15
Alignment explanation
Indices: 10963204--10963258 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
10963194 AAAAATCTTA
10963204 AAATCTTAAACCCTC
1 AAATCTTAAACCCTC
* * *
10963219 AAAT-TGAAATCCTA
1 AAATCTTAAACCCTC
*
10963233 AAACCTTAAACCCTC
1 AAATCTTAAACCCTC
*
10963248 AAATTTTAAAC
1 AAATCTTAAAC
10963259 TTTTAAACCC
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (15 bp):
AAATCTTAAACCCTC
Found at i:10963234 original size:29 final size:29
Alignment explanation
Indices: 10963196--10963252 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
10963186 TAAAAACCAA
* *
10963196 AAATCTTAAAATCTTAAACCCTCAAATTG
1 AAATCCTAAAACCTTAAACCCTCAAATTG
10963225 AAATCCTAAAACCTTAAACCCTCAAATT
1 AAATCCTAAAACCTTAAACCCTCAAATT
10963253 TTAAACTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.28
Consensus pattern (29 bp):
AAATCCTAAAACCTTAAACCCTCAAATTG
Found at i:10966964 original size:20 final size:20
Alignment explanation
Indices: 10966923--10966965 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10966913 TCAAATAGAG
*
10966923 ATAAAAATAAATATTATATT
1 ATAAAAATAAATATAATATT
* *
10966943 ATAAAAATTAATATAATTTT
1 ATAAAAATAAATATAATATT
10966963 ATA
1 ATA
10966966 TTTTTTTGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAAAAATAAATATAATATT
Found at i:10967333 original size:18 final size:19
Alignment explanation
Indices: 10967312--10967361 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
10967302 TACCTATTTC
10967312 ATATAAATATAAAAA-TAA
1 ATATAAATATAAAAATTAA
10967330 ATAT-AATATAAAAATTAA
1 ATATAAATATAAAAATTAA
*
10967348 ATA-AAAAATAAAAA
1 ATATAAATATAAAAA
10967362 ATATTTTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
ATATAAATATAAAAATTAA
Found at i:10969563 original size:21 final size:21
Alignment explanation
Indices: 10969529--10969574 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
10969519 TAACATCCAT
* * *
10969529 AAATACTAATAATAAAATTTA
1 AAATAATAAAAATAAAATTAA
*
10969550 AAATAATAAAAATAATATTAA
1 AAATAATAAAAATAAAATTAA
10969571 AAAT
1 AAAT
10969575 TTTTTAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATAATAAAAATAAAATTAA
Found at i:10970154 original size:25 final size:26
Alignment explanation
Indices: 10970126--10970182 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
10970116 TTTTTTTTTT
10970126 TTTTTGTA-GTGTTT-GATTCTTTCTC
1 TTTTTGTAGGT-TTTGGATTCTTTCTC
* * *
10970151 TTTTTTTAGGTTTTGGTTTCTTTTTC
1 TTTTTGTAGGTTTTGGATTCTTTCTC
10970177 TTTTTG
1 TTTTTG
10970183 GACAAAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.05, C:0.09, G:0.16, T:0.70
Consensus pattern (26 bp):
TTTTTGTAGGTTTTGGATTCTTTCTC
Found at i:10970484 original size:6 final size:6
Alignment explanation
Indices: 10970475--10970508 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
10970465 AAAAGAAGAA
*
10970475 AAAAAT AAAAATT AATAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAA-T AAAAAT AAAAAT AAAAAT AAA
10970509 GAAATGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:10970494 original size:13 final size:12
Alignment explanation
Indices: 10970475--10970508 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
10970465 AAAAGAAGAA
10970475 AAAAATAAAAATT
1 AAAAATAAAAA-T
*
10970488 AATAATAAAAAT
1 AAAAATAAAAAT
10970500 AAAAATAAA
1 AAAAATAAA
10970509 GAAATGGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:10980712 original size:25 final size:24
Alignment explanation
Indices: 10980675--10980741 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
10980665 TTAATGAGAT
10980675 CAATTAAACATAATTTTTTTCAATCA
1 CAATTAAA-ATAATTTTTTT-AATCA
* *
10980701 CAATTACAATAATTTTTTTAATGA
1 CAATTAAAATAATTTTTTTAATCA
* * *
10980725 TAATTATAGTAATTTTT
1 CAATTAAAATAATTTTT
10980742 ATTTATATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 18 0.50
25 11 0.31
26 7 0.19
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (24 bp):
CAATTAAAATAATTTTTTTAATCA
Found at i:10984175 original size:3 final size:3
Alignment explanation
Indices: 10984167--10984192 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10984157 TCATTATTTA
10984167 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
10984193 GTAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10986730 original size:2 final size:2
Alignment explanation
Indices: 10986725--10986755 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10986715 CACTTATCTA
10986725 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10986756 TACAACATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:10987091 original size:27 final size:27
Alignment explanation
Indices: 10987053--10987106 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
10987043 TTTTGTCAAA
10987053 TAATTTTATT-AATAAATTATTTAAATT
1 TAATTTTATTAAAT-AATTATTTAAATT
10987080 TAATATTT-TTAAATAATTATTTAAATT
1 TAAT-TTTATTAAATAATTATTTAAATT
10987107 AAAATCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TAATTTTATTAAATAATTATTTAAATT
Found at i:10987482 original size:27 final size:26
Alignment explanation
Indices: 10987433--10987491 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
10987423 TTTTTTTGTT
* * * * *
10987433 TTATTCATTTTTTAATATTTTTATTC
1 TTATTAATTTATTAACATATTTACTC
10987459 TCTATTAATTTATTAACATATTTACTC
1 T-TATTAATTTATTAACATATTTACTC
10987486 TTATTA
1 TTATTA
10987492 TTATATATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (26 bp):
TTATTAATTTATTAACATATTTACTC
Found at i:10991990 original size:2 final size:2
Alignment explanation
Indices: 10991985--10992019 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10991975 CTTCTTGGTA
10991985 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10992020 TTTTGTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:11000714 original size:22 final size:22
Alignment explanation
Indices: 11000671--11000716 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
11000661 ACTTATTATA
*
11000671 AAAATCCAAATTCAATTCAATC
1 AAAATCCAAATTCAATTAAATC
*
11000693 AAAATTCAACATTCAA-TAAATC
1 AAAATCCAA-ATTCAATTAAATC
11000715 AA
1 AA
11000717 GGTATGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAATCCAAATTCAATTAAATC
Found at i:11001505 original size:3 final size:3
Alignment explanation
Indices: 11001497--11001540 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
11001487 TCCAACGTAG
11001497 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
11001541 TTTATAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:11004127 original size:2 final size:2
Alignment explanation
Indices: 11004120--11004149 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
11004110 GTAAAGTGAA
*
11004120 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11004150 GAGAGGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11006383 original size:2 final size:2
Alignment explanation
Indices: 11006376--11006420 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11006366 CCTTTAAATT
11006376 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
11006418 TC T
1 TC T
11006421 TTACTTCCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:11007124 original size:2 final size:2
Alignment explanation
Indices: 11007119--11007143 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11007109 CTTTTTTTCT
11007119 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11007144 CTAATCTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11013004 original size:19 final size:19
Alignment explanation
Indices: 11012980--11013019 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
11012970 GATTTTTTTT
11012980 ATTT-AAAATAAATATAATA
1 ATTTAAAAAT-AATATAATA
11012999 ATTTAAAAATAATATAATA
1 ATTTAAAAATAATATAATA
11013018 AT
1 AT
11013020 ATGACATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTAAAAATAATATAATA
Found at i:11013070 original size:24 final size:24
Alignment explanation
Indices: 11012987--11013061 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 24
11012977 TTTATTTAAA
* *
11012987 ATAAATATAATAATTTAAAAATAAT
1 ATAAATA-AAAAATATAAAAATAAT
** * *
11013012 AT-AATAATATGACATAAAATTAAT
1 ATAAATAA-AAAATATAAAAATAAT
11013036 ATAAATAAAAAATATAAAAATAAT
1 ATAAATAAAAAATATAAAAATAAT
11013060 AT
1 AT
11013062 GATTTAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
23 1 0.03
24 32 0.80
25 7 0.17
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (24 bp):
ATAAATAAAAAATATAAAAATAAT
Found at i:11019022 original size:12 final size:12
Alignment explanation
Indices: 11019007--11019037 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11018997 TTAAATTTGC
*
11019007 TTTCTTTTCTTT
1 TTTCTTTTCCTT
11019019 TTTCTTTTCCTT
1 TTTCTTTTCCTT
11019031 TTTCTTT
1 TTTCTTT
11019038 AGTTTGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTCTTTTCCTT
Found at i:11031404 original size:26 final size:26
Alignment explanation
Indices: 11031366--11031415 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11031356 TATTGGAATC
*
11031366 TGTCAAGAACATGTACTCAAGCAATT
1 TGTCAAGAACATGAACTCAAGCAATT
*
11031392 TGTCAAGAGCATGAACTCAAGCAA
1 TGTCAAGAACATGAACTCAAGCAA
11031416 ACACAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (26 bp):
TGTCAAGAACATGAACTCAAGCAATT
Found at i:11041890 original size:2 final size:2
Alignment explanation
Indices: 11041883--11041913 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
11041873 ATCATGTGTT
*
11041883 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11041914 GTAACAGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11043099 original size:33 final size:30
Alignment explanation
Indices: 11043035--11043101 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 30
11043025 CCTCTCCTTG
*
11043035 TCCCTGTTTCTTTCTCTATCACGATCACGA
1 TCCCTGTTTCTTTCACTATCACGATCACGA
* *
11043065 TCCCTGTTTCTATCTCGACTATCACGGTCCCGA
1 TCCCTGTTTCT-T-TC-ACTATCACGATCACGA
11043098 TCCC
1 TCCC
11043102 GATCCCGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 11 0.35
31 1 0.03
32 2 0.06
33 17 0.55
ACGTcount: A:0.15, C:0.37, G:0.12, T:0.36
Consensus pattern (30 bp):
TCCCTGTTTCTTTCACTATCACGATCACGA
Found at i:11043157 original size:6 final size:6
Alignment explanation
Indices: 11043149--11043225 Score: 136
Period size: 6 Copynumber: 12.8 Consensus size: 6
11043139 GCCCCTCTCC
* *
11043149 CTTTCC CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTCTCT CTTTCT
1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT
11043197 CTTTCT CTTTCT CTTTCT CTTTCT CTTTC
1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTC
11043226 CTTGTCAGAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (6 bp):
CTTTCT
Found at i:11045480 original size:52 final size:52
Alignment explanation
Indices: 11045418--11045521 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
11045408 CAAATATCAA
*
11045418 ACATTACTAATAGCCAGATATAATACAAAGTAAAAAACCTAATGCCGTGTTT
1 ACATTACTAATAGCCAGATATAATACAAAGTAAAAAACCCAATGCCGTGTTT
* *
11045470 ACATTACTAATAGCCAGATATAATGCAAAGTAAAAAACCCAATGCTGTGTTT
1 ACATTACTAATAGCCAGATATAATACAAAGTAAAAAACCCAATGCCGTGTTT
11045522 TGGAACATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.27
Consensus pattern (52 bp):
ACATTACTAATAGCCAGATATAATACAAAGTAAAAAACCCAATGCCGTGTTT
Found at i:11056580 original size:2 final size:2
Alignment explanation
Indices: 11056575--11056609 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
11056565 GTCAGGTTGA
*
11056575 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11056610 AGTTTCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:11057476 original size:3 final size:3
Alignment explanation
Indices: 11057468--11057502 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
11057458 CATTTTTGTG
11057468 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11057503 TAATAGATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11057740 original size:26 final size:26
Alignment explanation
Indices: 11057682--11057740 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
11057672 TGACAATTTC
*
11057682 TAATGATTTTTAATAAAAAAACATTA
1 TAATAATTTTTAATAAAAAAACATTA
* * *
11057708 TATTAATTTTTTATATAAAAA-ATTA
1 TAATAATTTTTAATAAAAAAACATTA
11057733 TAAATAAT
1 T-AATAAT
11057741 AAAATCTCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATAATTTTTAATAAAAAAACATTA
Found at i:11061021 original size:29 final size:29
Alignment explanation
Indices: 11060954--11061023 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
11060944 TTTTATTTAT
* * *
11060954 TTAAAAATTTAATTACATTAAATAAGATA
1 TTAAAATTTTAATTACATTAAATAAAAGA
* * *
11060983 TTTAAGTTTTAATT-GATTATAATAAAAGA
1 TTAAAATTTTAATTACATTA-AATAAAAGA
11061012 TTAAAATTTTAA
1 TTAAAATTTTAA
11061024 ATGAACATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.50, C:0.01, G:0.06, T:0.43
Consensus pattern (29 bp):
TTAAAATTTTAATTACATTAAATAAAAGA
Found at i:11061774 original size:336 final size:340
Alignment explanation
Indices: 11061156--11061836 Score: 1136
Period size: 336 Copynumber: 2.0 Consensus size: 340
11061146 TCTAATATAT
*
11061156 CTTTCCCAATTACATTGAAGTTTGTGGCACTGATTTAATTGTTAAAATTTGTCATAATCTAAATC
1 CTTTCCCAATTACATTGAAGTTTGTGGCACTGATTTAATTGTTAAAATTTGTCATAAACTAAATC
*
11061221 TATTGAAGACTTAAAAAAAAAATAATAATAATAAACGGACAGAAAATCCACCACGGAATGTAATT
66 TATTGAAGACTT-AAAAAAAAATAATAATAATAAACGGAAAGAAAATCCACCACGGAATGTAATT
* **
11061286 TCCGTGATCCCACGTGATGAACGCCAATAAGGGGCCTTAAATAAGGGGTTTGTCCAAAGAAAGAA
130 TCCGTGATCCCACGTGATAAACGCCAATAAGGGGCCTTAAATAAGGGGGCTGTCCAAAGAAAGAA
11061351 CAAGAAAAAAGAAGAAAATGGAAGAGGCATTGCTAGGTGGAAAAGAGGAAGAAAAATGGAAGTTA
195 CAAGAAAAAAGAAGAAAATGGAAGAGGCATTGCTAGGTGGAAAAGAGGAAGAAAAATGGAAGTTA
**
11061416 ACATGGAATGGGTTTGGAGAGGAGCTGAAGAAGGTGAGCTACATGGCGTTGCGGATGGTGGCTGT
260 ACATGGAATGGGTTTGGAGAGGAGCTGAAGAAGGTGAGCTACATGGCGTTGCCAATGGTGGCTGT
* *
11061481 ATCTGTGTCGCGGTAC
325 ATCTGTGTCACAGTAC
*
11061497 CTTTCCCAATTACATTGAAGTTTGTGGCACTGATTTAATTGTTAAAATTTGTCATAAACTAAATT
1 CTTTCCCAATTACATTGAAGTTTGTGGCACTGATTTAATTGTTAAAATTTGTCATAAACTAAATC
* ** * * *
11061562 TATTGGAGACTT-TGAAAAAA-AA-AAT-ATAAATGGAAAGAAAATCCGCCACGGATTGTAATTT
66 TATTGAAGACTTAAAAAAAAATAATAATAATAAACGGAAAGAAAATCCACCACGGAATGTAATTT
*
11061623 CCGTGGTCCCACGTGATAAACGCCAATAAGGGGCCTTAAATAAGGGGGCTGTCCAAAGAAAGAAC
131 CCGTGATCCCACGTGATAAACGCCAATAAGGGGCCTTAAATAAGGGGGCTGTCCAAAGAAAGAAC
* * *
11061688 GAGAAAGAGGAAGAAAATGGAAGAGGCATTGCTAGGTGGAAAAGAGGAAGAAAAATGGAAGTTAA
196 AAGAAAAAAGAAGAAAATGGAAGAGGCATTGCTAGGTGGAAAAGAGGAAGAAAAATGGAAGTTAA
*
11061753 CATGGAATGGGTTTGGAGAGGAGCTGAAGAAGGTGAGCTACATGGCGTTGCCAATGGTGGCTGTG
261 CATGGAATGGGTTTGGAGAGGAGCTGAAGAAGGTGAGCTACATGGCGTTGCCAATGGTGGCTGTA
11061818 TCTGTGTCACAGTAC
326 TCTGTGTCACAGTAC
11061833 CTTT
1 CTTT
11061837 TGCAGGTCAT
Statistics
Matches: 319, Mismatches: 21, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
336 234 0.73
337 3 0.01
338 2 0.01
339 6 0.02
341 74 0.23
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (340 bp):
CTTTCCCAATTACATTGAAGTTTGTGGCACTGATTTAATTGTTAAAATTTGTCATAAACTAAATC
TATTGAAGACTTAAAAAAAAATAATAATAATAAACGGAAAGAAAATCCACCACGGAATGTAATTT
CCGTGATCCCACGTGATAAACGCCAATAAGGGGCCTTAAATAAGGGGGCTGTCCAAAGAAAGAAC
AAGAAAAAAGAAGAAAATGGAAGAGGCATTGCTAGGTGGAAAAGAGGAAGAAAAATGGAAGTTAA
CATGGAATGGGTTTGGAGAGGAGCTGAAGAAGGTGAGCTACATGGCGTTGCCAATGGTGGCTGTA
TCTGTGTCACAGTAC
Found at i:11063664 original size:14 final size:13
Alignment explanation
Indices: 11063639--11063687 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
11063629 TAAGATATAA
11063639 TATTTTTTATTTT
1 TATTTTTTATTTT
11063652 TATTTTTTAATTTT
1 TATTTTTT-ATTTT
* * *
11063666 TATATTATATTTA
1 TATTTTTTATTTT
11063679 T-TTTTTTAT
1 TATTTTTTAT
11063688 CTATACTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 6 0.20
13 13 0.43
14 11 0.37
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:11063850 original size:18 final size:18
Alignment explanation
Indices: 11063827--11063861 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11063817 ATTTAGATAA
* *
11063827 TTTTTTATTAACATATAC
1 TTTTTTAATAAAATATAC
11063845 TTTTTTAATAAAATATA
1 TTTTTTAATAAAATATA
11063862 TTAATTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTTTAATAAAATATAC
Found at i:11063897 original size:23 final size:23
Alignment explanation
Indices: 11063853--11063915 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 23
11063843 ACTTTTTTAA
11063853 TAAAATATATTAATTT-TAATTAATT
1 TAAAATA-A-TAATTTATAATT-ATT
11063878 TAAAATAATAATTTAT-ATTATT
1 TAAAATAATAATTTATAATTATT
*
11063900 TAATAA-AAAAATTTAT
1 TAA-AATAATAATTTAT
11063916 TTATTAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
22 15 0.43
23 11 0.31
24 2 0.06
25 7 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAAATAATAATTTATAATTATT
Found at i:11067862 original size:33 final size:33
Alignment explanation
Indices: 11067825--11067937 Score: 163
Period size: 33 Copynumber: 3.4 Consensus size: 33
11067815 CAGAACGTGG
* *
11067825 TGGTGGTGGCGGTGGTGGTGCACCATAAAAGTT
1 TGGTGGTGGTGGTGGCGGTGCACCATAAAAGTT
*
11067858 TGGTGGTGGTGGTGGCGGTGCACCATGAAAGTT
1 TGGTGGTGGTGGTGGCGGTGCACCATAAAAGTT
* * *
11067891 AGGTGGTGGTGGCGGCGGTGCACCATACAAGTT
1 TGGTGGTGGTGGTGGCGGTGCACCATAAAAGTT
*
11067924 CGGTGGTGGTGGTG
1 TGGTGGTGGTGGTG
11067938 CAAAAGGGTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.15, C:0.13, G:0.46, T:0.26
Consensus pattern (33 bp):
TGGTGGTGGTGGTGGCGGTGCACCATAAAAGTT
Found at i:11073076 original size:80 final size:80
Alignment explanation
Indices: 11072988--11073213 Score: 251
Period size: 80 Copynumber: 2.8 Consensus size: 80
11072978 AATCATTCAG
* *
11072988 CATATGATTTAGCCCCCCAATATCATACAAAACTATTCAGCAAAACAATATCAAACAACAAGGTT
1 CATATGATTTAGCCCCCCAATATCATACAATACCATTCAGCAAAACAATATCAAACAACAAGGTT
* *
11073053 CAACAAATTATTTAG-
66 CAACAAA-CAATTAGA
* * ** * *
11073068 TATATGATTCAGCCCTTCAATATCATACAATACCATTC-GACAATACAATATCAAACAATAAGGT
1 CATATGATTTAGCCCCCCAATATCATACAATACCATTCAG-CAAAACAATATCAAACAACAAGGT
* *
11073132 ACAACAAACAATTCGA
65 TCAACAAACAATTAGA
* * * * * *
11073148 CATACGATTTAGTCCCCCAATATCGTACAATACCATTCAACAAAA-AATATTAGACAACAAGGTT
1 CATATGATTTAGCCCCCCAATATCATACAATACCATTCAGCAAAACAATATCAAACAACAAGGTT
11073212 CA
66 CA
11073214 GTAAATTACA
Statistics
Matches: 118, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
79 22 0.19
80 96 0.81
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.25
Consensus pattern (80 bp):
CATATGATTTAGCCCCCCAATATCATACAATACCATTCAGCAAAACAATATCAAACAACAAGGTT
CAACAAACAATTAGA
Found at i:11083077 original size:135 final size:134
Alignment explanation
Indices: 11082891--11083233 Score: 361
Period size: 135 Copynumber: 2.6 Consensus size: 134
11082881 GACATTTTTA
* * * *
11082891 TACAAACACCACCAAAGTAACGAC-ATTTTTCTCATAAAAAT-ACTACTAAATTAGTGGCATCTC
1 TACAAACGCCACCAAAGCAACGACGA-TTTTCTCATAAAAATGTC-ACTAAATTAGCGGCATCTC
* * * * *
11082954 AAAGATACAAACACCGCTAATATAGAGGTATATTCATATACAAATACCTCTAAAGTAATGGCTTT
64 AAAGATAAAAACACCACTAATATAGAGGTATATTCAAATACAAATACCTATAAAGTAATGGCGTT
11083019 TTCAGT
129 TTCAGT
* * * * * * *
11083025 TACAAACGCCACTAACGCAATGACGCATTTTCTCATAAAAATGTCACTAAATTAACAGTATTTCA
1 TACAAACGCCACCAAAGCAACGACG-ATTTTCTCATAAAAATGTCACTAAATTAGCGGCATCTCA
* ** * * * *
11083090 AAGAAAAAAATGCCACTAATATAGATGTATTTTCAAATACAAATGCCTATAAAGTAGTGGCGTTT
65 AAGATAAAAACACCACTAATATAGAGGTATATTCAAATACAAATACCTATAAAGTAATGGCGTTT
11083155 TCAGT
130 TCAGT
* ** * *
11083160 TACAAACGTCACCAAAGCAACGTTGTTTTTCTCATAAAAACGTCACT-AATATAGCGGCATCT-A
1 TACAAACGCCACCAAAGCAACGACGATTTTCTCATAAAAATGTCACTAAAT-TAGCGGCATCTCA
*
11083223 AAGATAGAAAC
65 AAGATAAAAAC
11083234 GTTGCTAAAA
Statistics
Matches: 167, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
133 12 0.07
134 46 0.28
135 107 0.64
136 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (134 bp):
TACAAACGCCACCAAAGCAACGACGATTTTCTCATAAAAATGTCACTAAATTAGCGGCATCTCAA
AGATAAAAACACCACTAATATAGAGGTATATTCAAATACAAATACCTATAAAGTAATGGCGTTTT
CAGT
Found at i:11085627 original size:2 final size:2
Alignment explanation
Indices: 11085622--11085646 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11085612 ACACACACAC
11085622 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
11085647 AAGTGGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11086818 original size:11 final size:12
Alignment explanation
Indices: 11086800--11086828 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
11086790 TTATCCTGTA
11086800 TATTTTTTTTTG
1 TATTTTTTTTTG
11086812 T-TTTTTTTTTG
1 TATTTTTTTTTG
11086823 TATTTT
1 TATTTT
11086829 ATGTATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (12 bp):
TATTTTTTTTTG
Found at i:11086844 original size:3 final size:3
Alignment explanation
Indices: 11086823--11086948 Score: 54
Period size: 3 Copynumber: 41.3 Consensus size: 3
11086813 TTTTTTTTTG
*
11086823 TAT T-T TAT GTAT T-T TAT TAT TAT TAT TAT GTAT TAA TA- TAT ATATT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TA-T
* *
11086869 TATT TAT T-T T-T TAT TAT TA- GAT TA- GAT T-T ATAT GTAT ATAGT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT -TA-T
*
11086911 TAT ATATT TAT TAT TAT TA- TAT TAG TAT TAT TAT TAT T
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
11086949 TTTTTTTTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 32
0.71 0.06 0.23
Matches are distributed among these distances:
2 15 0.15
3 54 0.55
4 26 0.27
5 3 0.03
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:11087950 original size:5 final size:5
Alignment explanation
Indices: 11087933--11088010 Score: 87
Period size: 5 Copynumber: 16.4 Consensus size: 5
11087923 TTAATATTCT
*
11087933 TTTTA TCTTTA TTTTA TTTTA -TTT- TTTTA CTTTT- CTTTA -TTT- TTTTA
1 TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
11087980 TTTTA TTTTA TTTTA TTTTA TTTT- TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
11088011 ATTCTATTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 16
0.79 0.01 0.20
Matches are distributed among these distances:
4 19 0.30
5 36 0.56
6 9 0.14
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:11088108 original size:58 final size:58
Alignment explanation
Indices: 11088038--11088433 Score: 499
Period size: 58 Copynumber: 6.8 Consensus size: 58
11088028 TAAAAATAAA
* *
11088038 AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
1 AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
11088096 AAATTTCCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
11088154 AAATTTTCAAAAAAAAAAAAAAGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAA-TTTC----CAAAAAAATA-TTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
11088218 CAAAGTTTCAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAAT
1 -AAA-TTTCCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
11088278 AAAATTT-C---AAAATTTTTTTAGGG-AAAGTTAAAAGTATCAATTTTCCTTAGAAAT
1 -AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
11088332 AAATTTCC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
11088389 AAATTT-C-AAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
11088434 TCCTATACAA
Statistics
Matches: 302, Mismatches: 23, Indels: 29
0.85 0.06 0.08
Matches are distributed among these distances:
53 6 0.02
54 29 0.10
55 41 0.14
56 23 0.08
57 35 0.12
58 57 0.19
59 7 0.02
60 42 0.14
61 9 0.03
63 9 0.03
64 37 0.12
65 7 0.02
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (58 bp):
AAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:11088374 original size:111 final size:114
Alignment explanation
Indices: 11088170--11088433 Score: 385
Period size: 111 Copynumber: 2.3 Consensus size: 114
11088160 TCAAAAAAAA
* *
11088170 AAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAAA
1 AAAAAA-TTTTTTAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAAA
11088235 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAATAAAATTTC
65 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAAT-AAATTTC
* * *
11088286 -AAAATTTTTTTAGGGAAAGTTAAAAGTATCAATTTTCCTT-AGAAAT-AAA-TTTC-CAAAAAA
1 AAAAAATTTTTTAGGGAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAAGTTTCAAAAAAAA
* *
11088346 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
65 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAATAAATTTC
*
11088396 AAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATTTTTTAGGG-AAAGTTGAAAGTATCAATTTT
11088434 TCCTATACAA
Statistics
Matches: 135, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
110 7 0.05
111 60 0.44
112 24 0.18
113 4 0.03
114 36 0.27
115 4 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (114 bp):
AAAAAATTTTTTAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAAAT
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAATAAATTTC
Found at i:11088424 original size:55 final size:56
Alignment explanation
Indices: 11088184--11088433 Score: 337
Period size: 55 Copynumber: 4.4 Consensus size: 56
11088174 AAGTTTTTGA
* * *
11088184 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAAATATTTTTG
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC--AAAAAATATTTTAG
* * *
11088243 AGGAAAAGTTGAAAGTATCAATTTTCCTGAAAAATAAAATTTC-AAAATTTTTTTAG
1 -GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAATATTTTAG
* * *
11088299 GG-AAAGTTAAAAGTATCAATTTTCCTTAGAAAT-AAATTTCCAAAAAATATTTTTGG
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-CAAAAAATA-TTTTAG
11088355 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCAAAAAATATTTTAG
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAATATTTTAG
11088410 GGAAAAGTTGAAAGTATCAATTTT
1 GGAAAAGTTGAAAGTATCAATTTT
11088434 TCCTATACAA
Statistics
Matches: 171, Mismatches: 15, Indels: 13
0.86 0.08 0.07
Matches are distributed among these distances:
53 6 0.04
54 29 0.17
55 36 0.21
56 26 0.15
57 35 0.20
59 7 0.04
60 32 0.19
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (56 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAATATTTTAG
Found at i:11093690 original size:11 final size:10
Alignment explanation
Indices: 11093670--11093747 Score: 52
Period size: 11 Copynumber: 7.6 Consensus size: 10
11093660 TTTTTAGTAT
11093670 TATTATTATTA
1 TATTA-TATTA
11093681 TATTACTATTA
1 TATTA-TATTA
*
11093692 TAGTATA-T-
1 TATTATATTA
*
11093700 TATTATAATA
1 TATTATATTA
* **
11093710 TAGTATAGCA
1 TATTATATTA
11093720 TATTATATTTA
1 TATTATA-TTA
*
11093731 TATTATACTA
1 TATTATATTA
11093741 TTATTAT
1 -TATTAT
11093748 GATATAGTAG
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
8 6 0.11
9 2 0.04
10 17 0.32
11 28 0.53
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (10 bp):
TATTATATTA
Found at i:11093727 original size:5 final size:5
Alignment explanation
Indices: 11093670--11093747 Score: 52
Period size: 5 Copynumber: 15.2 Consensus size: 5
11093660 TTTTTAGTAT
* * * **
11093670 TATTA TTATTA TATTA CTATTA TAGTA TA-T- TATTA TAATA TAGTA TAGCA
1 TATTA -TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA
*
11093720 TATTA TATTTA TATTA TACTA TTATTA T
1 TATTA TA-TTA TATTA TATTA -TATTA T
11093748 GATATAGTAG
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
3 2 0.03
4 2 0.03
5 36 0.61
6 19 0.32
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (5 bp):
TATTA
Found at i:11093781 original size:18 final size:18
Alignment explanation
Indices: 11093687--11093818 Score: 63
Period size: 18 Copynumber: 7.0 Consensus size: 18
11093677 ATTATATTAC
*
11093687 TATTATAGTATATTATTA
1 TATTATAGTATATTATTT
* * *
11093705 TAATATAGTATAGCATATTA
1 TATTATAGTATA--TTATTT
* *
11093725 TATTTATATTATACTATTAT
1 TA-TTATAGTATATTATT-T
***
11093745 TATGATATAGTAGGGTATTT
1 TAT--TATAGTATATTATTT
11093765 TATTATAGTATATTATTT
1 TATTATAGTATATTATTT
*
11093783 T-TT-TTGCTATTATTATTAT
1 TATTATAG-TA-TATTATT-T
*
11093802 TATTATTGT-TATTATTT
1 TATTATAGTATATTATTT
11093819 ATTTTATTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 23
0.71 0.11 0.18
Matches are distributed among these distances:
16 2 0.02
17 5 0.06
18 38 0.43
19 7 0.08
20 16 0.18
21 21 0.24
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (18 bp):
TATTATAGTATATTATTT
Found at i:11093796 original size:3 final size:3
Alignment explanation
Indices: 11093790--11093836 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
11093780 TTTTTTTTGC
*
11093790 TAT TAT TAT TAT TAT TAT TGT TAT TATT TAT T-T TAT T-T TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
11093833 TAT T
1 TAT T
11093837 TTTTTCTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 6 0.16
3 29 0.76
4 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (3 bp):
TAT
Found at i:11094184 original size:24 final size:21
Alignment explanation
Indices: 11094157--11094200 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
11094147 TTGGGCAGTA
11094157 GGGAATTTCTGGGACTTTGATTTT
1 GGGAATTT-T-GGA-TTTGATTTT
11094181 GGGAATTTTGGATTTGATTT
1 GGGAATTTTGGATTTGATTT
11094201 AAAGTTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 3 0.15
23 1 0.05
24 8 0.40
ACGTcount: A:0.18, C:0.05, G:0.30, T:0.48
Consensus pattern (21 bp):
GGGAATTTTGGATTTGATTTT
Found at i:11094221 original size:20 final size:20
Alignment explanation
Indices: 11094196--11094240 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
11094186 TTTTGGATTT
11094196 GATTTAAAGTTTCTAGGTTA
1 GATTTAAAGTTTCTAGGTTA
*
11094216 GATTT-AGGTTTCTAGGTTA
1 GATTTAAAGTTTCTAGGTTA
11094235 GATTTA
1 GATTTA
11094241 GTTTTCTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (20 bp):
GATTTAAAGTTTCTAGGTTA
Found at i:11094228 original size:19 final size:19
Alignment explanation
Indices: 11094204--11094249 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
11094194 TTGATTTAAA
11094204 GTTTCTAGGTTAGATTTAG
1 GTTTCTAGGTTAGATTTAG
11094223 GTTTCTAGGTTAGATTTAG
1 GTTTCTAGGTTAGATTTAG
*
11094242 TTTTCTAG
1 GTTTCTAG
11094250 TGTTTTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.50
Consensus pattern (19 bp):
GTTTCTAGGTTAGATTTAG
Found at i:11094742 original size:18 final size:16
Alignment explanation
Indices: 11094721--11094806 Score: 70
Period size: 17 Copynumber: 5.2 Consensus size: 16
11094711 CAAGTTTTCT
11094721 TTTTTTATTTTAATTTCA
1 TTTTTTATTTT-ATTT-A
*
11094739 TTTTCTAATTTTATTT-
1 TTTT-TTATTTTATTTA
*
11094755 TTTATTA-TTTATTTA
1 TTTTTTATTTTATTTA
*
11094770 TTTTATATTTTGATTT-
1 TTTTTTATTTT-ATTTA
11094786 TATTTTTAGTTTTATTTA
1 T-TTTTTA-TTTTATTTA
11094804 TTT
1 TTT
11094807 CATTTTACTG
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
14 7 0.13
15 7 0.13
16 7 0.13
17 15 0.27
18 13 0.24
19 6 0.11
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTTATTTTATTTA
Found at i:11094756 original size:31 final size:31
Alignment explanation
Indices: 11094721--11094786 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
11094711 CAAGTTTTCT
*
11094721 TTTTTTATT-TTAATTTCATTTTCTAATTTT-A
1 TTTTTTATTATTAATTT-ATTTTAT-ATTTTGA
*
11094752 TTTTTTATTATTTATTTATTTTATATTTTGA
1 TTTTTTATTATTAATTTATTTTATATTTTGA
11094783 TTTT
1 TTTT
11094787 ATTTTTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 5 0.16
31 20 0.65
32 6 0.19
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (31 bp):
TTTTTTATTATTAATTTATTTTATATTTTGA
Found at i:11094785 original size:13 final size:12
Alignment explanation
Indices: 11094723--11094802 Score: 51
Period size: 13 Copynumber: 6.7 Consensus size: 12
11094713 AGTTTTCTTT
*
11094723 TTTTA-TTTTAA
1 TTTTATTTTTGA
* *
11094734 TTTCATTTTCTAA
1 TTTTATTTT-TGA
11094747 TTTTATTTTT--
1 TTTTATTTTTGA
* *
11094757 TATTATTTATTTA
1 TTTTATTT-TTGA
11094770 TTTTATATTTTGA
1 TTTTAT-TTTTGA
11094783 TTTTATTTTT-A
1 TTTTATTTTTGA
11094794 GTTTTATTT
1 -TTTTATTT
11094803 ATTTCATTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
10 7 0.12
11 7 0.12
12 16 0.28
13 25 0.44
14 2 0.04
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTTTTGA
Found at i:11094798 original size:7 final size:6
Alignment explanation
Indices: 11094722--11094802 Score: 53
Period size: 6 Copynumber: 13.5 Consensus size: 6
11094712 AAGTTTTCTT
* * *
11094722 TTTTTA -TTTTA ATTTCA TTTTCTA ATTTTA TTTTTTA TTATTTA --TTTA
1 TTTTTA TTTTTA TTTTTA TTTT-TA TTTTTA -TTTTTA TT-TTTA TTTTTA
* *
11094770 TTTTATA TTTTGA -TTTTA TTTTTA GTTTTA TTT
1 TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TTT
11094803 ATTTCATTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
4 4 0.07
5 9 0.16
6 26 0.45
7 19 0.33
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:11094840 original size:41 final size:38
Alignment explanation
Indices: 11094750--11094841 Score: 89
Period size: 41 Copynumber: 2.3 Consensus size: 38
11094740 TTTCTAATTT
*
11094750 TATTT-TTTATTATTTATTTATTTTATATTTTGATTTTA
1 TATTTATTT-TTATTTATTTATTTTATATTTTGATTTAA
* * *
11094788 TTTTTAGTTTTATTTATTTCATTTTACTGATTTTTA-TTAA
1 TATTTATTTTTATTTATTT-ATTTTA-T-ATTTTGATTTAA
11094828 GTATTTATTTTTAT
1 -TATTTATTTTTAT
11094842 GGAGTGATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
38 14 0.33
39 8 0.19
40 4 0.09
41 17 0.40
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (38 bp):
TATTTATTTTTATTTATTTATTTTATATTTTGATTTAA
Found at i:11100016 original size:84 final size:81
Alignment explanation
Indices: 11099853--11100088 Score: 240
Period size: 83 Copynumber: 2.8 Consensus size: 81
11099843 TTCAAAGCCT
* * * *
11099853 TGAA-AGCATTTTATTTTTCAAAGTTTCAACGCCTCAATTGTGGCGAGCATTTTATTTTTCAAAA
1 TGAAGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGG-GAGAATTTTATTTTTCAAAA
*
11099917 GTTTCAAAATCTCAGTCG
65 G-TTCAAAAGCTCAGTCG
* * * * *
11099935 TGAAGAGCATTTTATTTTTCAAAGCTCCAAGGCTTCAGTTATAAGGGAGTATTTTATTTTTCAAA
1 TGAAGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTAT--GGGAGAATTTTATTTTTCAAA
* *
11100000 AGTTCTAAAGCTTCAGTTG
64 AGTTCAAAAGC-TCAGTCG
** ** *
11100019 TGGGGAGTTTTTTTATTTTTTAAAAGTTTCAAAGCCTCAGTTATGGGAGAAATTTTATTTTTCAA
1 TGAAGAG-CATTTTA-TTTTTCAAAGTTTCAAAGCCTCAGTTATGGGAG-AATTTTATTTTTCAA
11100084 AAGTT
63 AAGTT
11100089 TTAGGGCCTT
Statistics
Matches: 127, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
82 4 0.03
83 38 0.30
84 36 0.28
85 26 0.20
86 23 0.18
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (81 bp):
TGAAGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGAGAATTTTATTTTTCAAAAG
TTCAAAAGCTCAGTCG
Found at i:11100086 original size:42 final size:41
Alignment explanation
Indices: 11099857--11100089 Score: 211
Period size: 42 Copynumber: 5.6 Consensus size: 41
11099847 AAGCCTTGAA
* *
11099857 AGCATTTTATTTTTC-AAAGTTTCAACGCCTCAATTGTGGCG
1 AGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG-G
** * *
11099898 AGCATTTTATTTTTCAAAAGTTTCAAAATCTCAGTCGTGAAG
1 AGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTG-GG
* * * * *
11099940 AGCATTTTATTTTTC-AAAGCTCCAAGGCTTCAGTTATAAGGG
1 AGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGT--GGG
* *
11099982 AGTATTTTATTTTTCAAAAG-TTCTAAAGCTTCAGTTGTGGGG
1 AGCATTTTATTTTTCAAAAGTTTC-AAAGCCTCAGTTGT-GGG
** * *
11100024 AGTTTTTTTATTTTTTAAAAGTTTCAAAGCCTCAGTTATGGG
1 AG-CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGG
*
11100066 AGAAATTTTATTTTTCAAAAGTTT
1 AG-CATTTTATTTTTCAAAAGTTT
11100090 TAGGGCCTTA
Statistics
Matches: 156, Mismatches: 28, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
41 29 0.19
42 79 0.51
43 45 0.29
44 3 0.02
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.42
Consensus pattern (41 bp):
AGCATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGG
Found at i:11100433 original size:20 final size:20
Alignment explanation
Indices: 11100387--11100429 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
11100377 TAAGCCCTAA
11100387 TTTTTA-TTTATATTTTAAT
1 TTTTTAGTTTATATTTTAAT
*
11100406 TTTTTAGTTTA-ATTTTTAT
1 TTTTTAGTTTATATTTTAAT
11100425 TTTTT
1 TTTTT
11100430 TAGTCAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTAGTTTATATTTTAAT
Found at i:11100478 original size:19 final size:19
Alignment explanation
Indices: 11100454--11100491 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
11100444 AGAGTCAATT
11100454 GGTAAAAA-AAATAAAAAAG
1 GGTAAAAATAAA-AAAAAAG
11100473 GGTAAAAATAAAAAAAAAG
1 GGTAAAAATAAAAAAAAAG
11100492 AAAAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (19 bp):
GGTAAAAATAAAAAAAAAG
Found at i:11101120 original size:115 final size:115
Alignment explanation
Indices: 11100882--11101112 Score: 408
Period size: 115 Copynumber: 2.0 Consensus size: 115
11100872 AAGGAAGACT
* * *
11100882 AAGATTTATAATAAGAAACATCAAATTTTGAAAGTTGAAAAATTGGCTTCAACATTGAGGTGTAT
1 AAGATTTATAATAAGAAACATCAAATTTTGAAAGGTGAAAAATTGACTTCAACAATGAGGTGTAT
*
11100947 GCTACTCATGAGGTAGTTCTTCATGCATGATTACTCTTTTTTATTGTCCA
66 GCTACTCATGAGGTAGTTCTTCATGCACGATTACTCTTTTTTATTGTCCA
* *
11100997 AAGATTTATAATAAGAAGCATCAATTTTTGAAAGGTGAAAAATTGACTTCAACAATGAGGTGTAT
1 AAGATTTATAATAAGAAACATCAAATTTTGAAAGGTGAAAAATTGACTTCAACAATGAGGTGTAT
11101062 GCTACTCATGAGGTAGTTCTTCATGCACGATTACTCTTTTTTATTGTCCA
66 GCTACTCATGAGGTAGTTCTTCATGCACGATTACTCTTTTTTATTGTCCA
11101112 A
1 A
11101113 TTCTTTATTA
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 110 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.36
Consensus pattern (115 bp):
AAGATTTATAATAAGAAACATCAAATTTTGAAAGGTGAAAAATTGACTTCAACAATGAGGTGTAT
GCTACTCATGAGGTAGTTCTTCATGCACGATTACTCTTTTTTATTGTCCA
Found at i:11101679 original size:16 final size:16
Alignment explanation
Indices: 11101660--11101692 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11101650 TTAATTTTAT
11101660 ATTGCTATTATTTAGA
1 ATTGCTATTATTTAGA
*
11101676 ATTGTTATTATTTAGA
1 ATTGCTATTATTTAGA
11101692 A
1 A
11101693 GAAGCTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (16 bp):
ATTGCTATTATTTAGA
Found at i:11104151 original size:15 final size:14
Alignment explanation
Indices: 11104131--11104164 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
11104121 AATTCAAGTG
11104131 TCAAATTCCAAAGAC
1 TCAAATT-CAAAGAC
*
11104146 TCAAATTTAAAGAC
1 TCAAATTCAAAGAC
11104160 TCAAA
1 TCAAA
11104165 ATAATTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.50, C:0.21, G:0.06, T:0.24
Consensus pattern (14 bp):
TCAAATTCAAAGAC
Found at i:11112092 original size:79 final size:79
Alignment explanation
Indices: 11111961--11112260 Score: 537
Period size: 79 Copynumber: 3.8 Consensus size: 79
11111951 TAGGGCAGCT
*
11111961 TATTTTATATAGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
1 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
11112026 TCCTATTATTTTGA
66 TCCTATTATTTTGA
* *
11112040 TATTTTATATGGTATAATATCTCAATTTATTGATTGATCCCAATTTATGCAGGATTCTATTTTTA
1 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
11112105 TCCTATTATTTTGA
66 TCCTATTATTTTGA
11112119 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
1 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
*
11112184 TCCTATTGTTTTGA
66 TCCTATTATTTTGA
* * *
11112198 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAGTGCATGCAGGATTGTATTTT
1 TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTT
11112261 GATTTCTTGC
Statistics
Matches: 212, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 212 1.00
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (79 bp):
TATTTTATATGGTATAATATCTCAATTTATTGGTTGATCCCAATGTATGCAGGATTCTATTTTTA
TCCTATTATTTTGA
Found at i:11112902 original size:2 final size:2
Alignment explanation
Indices: 11112895--11112923 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11112885 ATCTCCCTAT
11112895 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
11112924 TCAGCCTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:11114656 original size:2 final size:2
Alignment explanation
Indices: 11114649--11114694 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
11114639 GAAAAATGTG
**
11114649 TA TA TA TA TA TA TA TA TA TA TA TA TA GG TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11114691 TA TA
1 TA TA
11114695 GGTAAGCTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:11114811 original size:2 final size:2
Alignment explanation
Indices: 11114806--11114832 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11114796 TATATATATA
11114806 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
11114833 AGTGGTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:11115527 original size:2 final size:2
Alignment explanation
Indices: 11115520--11115544 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11115510 TTAATTTACT
11115520 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11115545 CAACTTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11119272 original size:22 final size:21
Alignment explanation
Indices: 11119234--11119281 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
11119224 AAATTATTTT
**
11119234 TTATTTTTAATTAATTTTTAA
1 TTATTTTTAATTAATTTAAAA
*
11119255 TTATTTTATATTTAATTTAAAA
1 TTATTTT-TAATTAATTTAAAA
11119277 TTATT
1 TTATT
11119282 AAATATTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATTTTTAATTAATTTAAAA
Found at i:11119287 original size:22 final size:22
Alignment explanation
Indices: 11119244--11119288 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
11119234 TTATTTTTAA
** **
11119244 TTAATTTTTAATTATTTTATAT
1 TTAATTTAAAATTATTAAATAT
11119266 TTAATTTAAAATTATTAAATAT
1 TTAATTTAAAATTATTAAATAT
11119288 T
1 T
11119289 CACTATAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTAATTTAAAATTATTAAATAT
Found at i:11120503 original size:20 final size:21
Alignment explanation
Indices: 11120478--11120516 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
11120468 ATATATATCA
11120478 TTTTTTCTTTTC-TTTTTTTT
1 TTTTTTCTTTTCATTTTTTTT
*
11120498 TTTTTTTTTTTCATTTTTT
1 TTTTTTCTTTTCATTTTTT
11120517 AAGATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.90
Consensus pattern (21 bp):
TTTTTTCTTTTCATTTTTTTT
Found at i:11128563 original size:4 final size:4
Alignment explanation
Indices: 11128554--11128578 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
11128544 ATCTTACATC
11128554 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
11128579 GTGATTGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:11137084 original size:14 final size:14
Alignment explanation
Indices: 11137065--11137099 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
11137055 AAAGCTAAAA
11137065 TTCTTTTCTATTAT
1 TTCTTTTCTATTAT
*
11137079 TTCTTTTCTCTTAT
1 TTCTTTTCTATTAT
*
11137093 TTATTTT
1 TTCTTTT
11137100 TTTCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTTTCTATTAT
Found at i:11138861 original size:64 final size:65
Alignment explanation
Indices: 11138742--11138894 Score: 170
Period size: 64 Copynumber: 2.4 Consensus size: 65
11138732 ATTATTTGTA
* * ** *
11138742 AGAGATTATTCAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATTTAAAAATTTTTGGAG
1 AGAGAATATTAAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATAGAAAAAATTTTGGAG
* *
11138807 AGAGAATATTAAAGGCATTTTC-GAG-AAAAAATGCCTTCAATAATCTATAGAAAAAATTTTGGA
1 AGAGAATATTAAAGGCATTTTCTG-GTAAAAAACGCCTTCAATAATCCATAGAAAAAATTTTGGA
11138870 -
65 G
* * * *
11138870 ATAGATTCTTGAAGGCATTTT-TGGT
1 AGAGAATATTAAAGGCATTTTCTGGT
11138895 CGAAAGTATA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.24
64 34 0.46
65 21 0.28
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (65 bp):
AGAGAATATTAAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATAGAAAAAATTTTGGAG
Found at i:11138862 original size:65 final size:65
Alignment explanation
Indices: 11138742--11138866 Score: 164
Period size: 65 Copynumber: 1.9 Consensus size: 65
11138732 ATTATTTGTA
* * **
11138742 AGAGATTATTCAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATTTAAAAATTTTTGGAG
1 AGAGAATATTAAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATGAAAAAATTTTTGGAG
* *
11138807 AGAGAATATTAAAGGCATTTTC-GAG-AAAAAATGCCTTCAATAATCTATAGAAAAAATTTT
1 AGAGAATATTAAAGGCATTTTCTG-GTAAAAAACGCCTTCAATAATCCAT-GAAAAAATTTT
11138867 GGAATAGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 22 0.42
65 30 0.58
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (65 bp):
AGAGAATATTAAAGGCATTTTCTGGTAAAAAACGCCTTCAATAATCCATGAAAAAATTTTTGGAG
Found at i:11139011 original size:125 final size:127
Alignment explanation
Indices: 11138834--11139083 Score: 315
Period size: 125 Copynumber: 2.0 Consensus size: 127
11138824 TTTTCGAGAA
* * * * * * * *
11138834 AAAATGCCTTCAATAATCTATAGAAAAAATTTTGGAATAGATTCTTGAAGGCATTTTTGGTCGAA
1 AAAACGCCTTCAATAATCCATACAAAAAATTTTAGAATAGATTCTTAAAGGCATTTTAGGCCAAA
* * * * * *
11138899 AGTATATCCAATAATCCACTCAATAAATTTTTATGAGGGATTATTGAAGGTAG-TTTGGTGG
66 AATACATCAAATAATCAACTCAATAAATTTTTATAAGGGATTATTAAAGGTAGATTTGGTGG
11138960 AAAACGCCTTCAATAATCCATACAAAAAA-TTTAGAATAGATTCTTAAAGGCATTTTAGGCCAAA
1 AAAACGCCTTCAATAATCCATACAAAAAATTTTAGAATAGATTCTTAAAGGCATTTTAGGCCAAA
* * * * *
11139024 AATGCCTTAAATAATCAATTTAATAAATTTTTATAAGGGATTATTAAAGGTAGATTTGGT
66 AATACATCAAATAATCAACTCAATAAATTTTTATAAGGGATTATTAAAGGTAGATTTGGT
11139084 CAAAAATACC
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
125 72 0.69
126 32 0.31
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (127 bp):
AAAACGCCTTCAATAATCCATACAAAAAATTTTAGAATAGATTCTTAAAGGCATTTTAGGCCAAA
AATACATCAAATAATCAACTCAATAAATTTTTATAAGGGATTATTAAAGGTAGATTTGGTGG
Found at i:11139101 original size:64 final size:63
Alignment explanation
Indices: 11138919--11139101 Score: 163
Period size: 64 Copynumber: 2.9 Consensus size: 63
11138909 ATAATCCACT
* * ** * * *
11138919 CAATAAATTTTTATGAGGGATTATTGAAGGTAGTTTGGTGGAAAACGCCTTCAATAATCCATA
1 CAATAAATTTTTATAAGGGATTATTAAAGGTAGTTTGGTCAAAAATGCCTTAAATAATCAATA
* * ** * * * * *
11138982 CAA-AAA-ATTTAGAATAGATTCTTAAAGGCATTTTAGGCCAAAAATGCCTTAAATAATCAATT
1 CAATAAATTTTTATAAGGGATTATTAAAGGTAGTTT-GGTCAAAAATGCCTTAAATAATCAATA
* * *
11139044 TAATAAATTTTTATAAGGGATTATTAAAGGTAGATTTGGTCAAAAATACCTTTAATAA
1 CAATAAATTTTTATAAGGGATTATTAAAGGTAG-TTTGGTCAAAAATGCCTTAAATAA
11139102 CATTTGTTAG
Statistics
Matches: 89, Mismatches: 27, Indels: 7
0.72 0.22 0.06
Matches are distributed among these distances:
61 19 0.21
62 25 0.28
63 6 0.07
64 36 0.40
65 3 0.03
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (63 bp):
CAATAAATTTTTATAAGGGATTATTAAAGGTAGTTTGGTCAAAAATGCCTTAAATAATCAATA
Found at i:11140747 original size:27 final size:27
Alignment explanation
Indices: 11140696--11140747 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
11140686 CCTCCTACAA
*
11140696 CATATAATGAAATATAAGTATTAAAAT
1 CATATAATGAAATATAAGTAATAAAAT
11140723 CATATCAAT-AAATATAA-TAAATAAA
1 CATAT-AATGAAATATAAGT-AATAAA
11140748 TAAATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 1 0.05
27 18 0.82
28 3 0.14
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.31
Consensus pattern (27 bp):
CATATAATGAAATATAAGTAATAAAAT
Found at i:11142398 original size:13 final size:13
Alignment explanation
Indices: 11142364--11142423 Score: 79
Period size: 12 Copynumber: 4.8 Consensus size: 13
11142354 ATGTGTTCAA
11142364 AAACACCATTTAG
1 AAACACCATTTAG
*
11142377 CAA-ACCATTTAG
1 AAACACCATTTAG
*
11142389 AAACACCATTCAG
1 AAACACCATTTAG
*
11142402 GAA-ACCATTTAG
1 AAACACCATTTAG
11142414 AAACACCATT
1 AAACACCATT
11142424 CAACAAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
12 21 0.54
13 18 0.46
ACGTcount: A:0.45, C:0.25, G:0.08, T:0.22
Consensus pattern (13 bp):
AAACACCATTTAG
Found at i:11142437 original size:25 final size:25
Alignment explanation
Indices: 11142364--11142430 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
11142354 ATGTGTTCAA
*
11142364 AAACACCATTTAGCAAACCATTTAG
1 AAACACCATTCAGCAAACCATTTAG
*
11142389 AAACACCATTCAGGAAACCATTTAG
1 AAACACCATTCAGCAAACCATTTAG
*
11142414 AAACACCATTCAACAAA
1 AAACACCATTCAGCAAA
11142431 TTATTTAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.48, C:0.25, G:0.07, T:0.19
Consensus pattern (25 bp):
AAACACCATTCAGCAAACCATTTAG
Found at i:11153396 original size:12 final size:11
Alignment explanation
Indices: 11153340--11153432 Score: 53
Period size: 12 Copynumber: 8.0 Consensus size: 11
11153330 GATATTTATT
11153340 TTTATTCATTTA
1 TTTATT-ATTTA
* *
11153352 TTAATAATTTA
1 TTTATTATTTA
**
11153363 TTTCATTATAGAA
1 TTT-ATTAT-TTA
11153376 TTTATTATTTA
1 TTTATTATTTA
11153387 TTTATGTATTTA
1 TTTAT-TATTTA
* *
11153399 TTCAGTT-TCTA
1 TTTA-TTATTTA
*
11153410 GTTATTTATTTA
1 TTTA-TTATTTA
*
11153422 TTAATTATTTA
1 TTTATTATTTA
11153433 ACTCTATAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 11
0.69 0.18 0.13
Matches are distributed among these distances:
11 27 0.45
12 28 0.47
13 5 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:11156076 original size:62 final size:62
Alignment explanation
Indices: 11155947--11156170 Score: 181
Period size: 62 Copynumber: 3.6 Consensus size: 62
11155937 TTTATATTCT
* * * * * ****
11155947 TATAAATAGATTATTT-AAGATATTTTTGTATAAAAAATATCTTAAATAATTCTTTTATATTTT
1 TATAAAAAAATTATTTAAAG-TATTTTTGTATACAAAAT-TATTAAATAATTCATTTATAAAAA
*
11156010 TATAAAAAAATTATTTAAAGTA-TTTTCTATACAAAATGTATTAAATAATTCATTTATAAAAA
1 TATAAAAAAATTATTTAAAGTATTTTTGTATACAAAAT-TATTAAATAATTCATTTATAAAAA
* * * * *
11156072 TAT-AAAAAATTATTTAAGGTATTTTTTGTATAGAAACACTTA--AAAAAAATCTATTTATAACA
1 TATAAAAAAATTATTTAAAGTA-TTTTTGTATACAAA-A-TTATTAAATAATTC-ATTTATAAAA
11156134 A
62 A
* * *
11156135 TATAAAAAGATTATTTAAAGCATTTTT-TGTACAAAA
1 TATAAAAAAATTATTTAAAGTATTTTTGTATACAAAA
11156171 AAGCTTTATA
Statistics
Matches: 132, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
61 18 0.14
62 47 0.36
63 45 0.34
64 21 0.16
65 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (62 bp):
TATAAAAAAATTATTTAAAGTATTTTTGTATACAAAATTATTAAATAATTCATTTATAAAAA
Found at i:11156192 original size:63 final size:64
Alignment explanation
Indices: 11155947--11156200 Score: 209
Period size: 63 Copynumber: 4.0 Consensus size: 64
11155937 TTTATATTCT
* * ** * ****
11155947 TATAAATAGATTATTT-AAG-ATATTTTTGTATAAAAAATATCTTAAATAATTCTTTTATATTTT
1 TATAAAAAGATTATTTAAAGTAT-TTTTTGTACAAAAAAGCTATTAAATAATTCTTTTATAAAAA
* * * * *
11156010 TATAAAAAAATTATTTAAAGTATTTTCTATAC-AAAATG-TATTAAATAATTCATTTATAAAAA
1 TATAAAAAGATTATTTAAAGTATTTTTTGTACAAAAAAGCTATTAAATAATTCTTTTATAAAAA
* * * * * * *
11156072 TATAAAAA-ATTATTTAAGGTATTTTTTGTATAGAAACA-CT-TAAAAAAAATCTATTTATAACA
1 TATAAAAAGATTATTTAAAGTATTTTTTGTACA-AAAAAGCTATTAAATAATTCT-TTTATAAAA
11156134 A
64 A
* * *
11156135 TATAAAAAGATTATTTAAAGCATTTTTTGTACAAAAAAGCT-TTATATAATCCTTTTATAAAAA
1 TATAAAAAGATTATTTAAAGTATTTTTTGTACAAAAAAGCTATTAAATAATTCTTTTATAAAAA
11156198 TAT
1 TAT
11156201 TAACCCTAAA
Statistics
Matches: 149, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
61 19 0.13
62 34 0.23
63 55 0.37
64 39 0.26
65 2 0.01
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.43
Consensus pattern (64 bp):
TATAAAAAGATTATTTAAAGTATTTTTTGTACAAAAAAGCTATTAAATAATTCTTTTATAAAAA
Found at i:11156247 original size:148 final size:145
Alignment explanation
Indices: 11156068--11156348 Score: 354
Period size: 148 Copynumber: 1.9 Consensus size: 145
11156058 TTCATTTATA
* * *
11156068 AAAATATAAAAAATTATTTAAGGTATTTTTTGTATAGAAA-CACTTAAAAAAAATCTATTTATAA
1 AAAATATAAAAAATTATTTAAGGCATATTTTGTATAAAAAGC-CTT--AAAAAATC-ATTTATAA
* * *
11156132 CAATATAAAAAGATTATTTAAAGCA-TTTTTTGTACAAAAAAG-CTTTATATAATCCT-TTTATA
62 AAATATAAAAAGATTATTTAAAGCATTTTTTTGTA-AAAAAAGACCTTAAATAAT-CTATTTATA
11156194 AAAATATTAACCCTAAAACCT
125 AAAATATTAACCCTAAAACCT
* * *
11156215 AAAATATAAAAGGATTATTTAAGGCATATTTTGTATAAAAATGCCTTAAATATTCATTTATAAAA
1 AAAATATAAAA-AATTATTTAAGGCATATTTTGTATAAAAA-GCCTTAAAAAATCATTTATAAAA
* *
11156280 ATATAAAAAGATTATTTAAGGTATTTTTTTTGTAAAAAAAGACCTTAAATAATCTATTTATAAAA
64 ATATAAAAAGATTATTTAAAGCA-TTTTTTTGTAAAAAAAGACCTTAAATAATCTATTTATAAAA
11156345 ATAT
128 ATAT
11156349 AAAATGATTA
Statistics
Matches: 116, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
146 30 0.26
147 26 0.22
148 56 0.48
149 3 0.03
150 1 0.01
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (145 bp):
AAAATATAAAAAATTATTTAAGGCATATTTTGTATAAAAAGCCTTAAAAAATCATTTATAAAAAT
ATAAAAAGATTATTTAAAGCATTTTTTTGTAAAAAAAGACCTTAAATAATCTATTTATAAAAATA
TTAACCCTAAAACCT
Found at i:11156358 original size:65 final size:62
Alignment explanation
Indices: 11156215--11156410 Score: 268
Period size: 63 Copynumber: 3.1 Consensus size: 62
11156205 CCTAAAACCT
* * * *
11156215 AAAATATAAAAGGATTATTTAAGGCATATTTTGTATAAAAATGCCTTAAATATTCATTTATA
1 AAAATATAAAAAGATTATTTAAGGCATTTTTTGTACAAAAATGCCTTAAATAATCATTTATA
* *
11156277 AAAATATAAAAAGATTATTTAAGGTATTTTTTTTGTA-AAAAAAGACCTTAAATAATCTATTTAT
1 AAAATATAAAAAGATTATTTAAGGCA--TTTTTTGTACAAAAATG-CCTTAAATAATC-ATTTAT
11156341 A
62 A
* *
11156342 AAAATATAAAATGATTATTTAAGGCATTTTTTATACAAAAATGCCTTAAATAATCATTTTATA
1 AAAATATAAAAAGATTATTTAAGGCATTTTTTGTACAAAAATGCCTTAAATAATCA-TTTATA
11156405 AAAATA
1 AAAATA
11156411 ATAATCCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
62 25 0.21
63 38 0.32
64 25 0.21
65 31 0.26
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (62 bp):
AAAATATAAAAAGATTATTTAAGGCATTTTTTGTACAAAAATGCCTTAAATAATCATTTATA
Found at i:11156372 original size:211 final size:210
Alignment explanation
Indices: 11156010--11156512 Score: 680
Period size: 211 Copynumber: 2.4 Consensus size: 210
11156000 TTTATATTTT
** * **
11156010 TATAAAAAAATTATTTAA-AGTATTTTCTATACAAAATGTATTAAATAATTCATTTATAAAAATA
1 TATAAAAGGATTATTTAAGACTATTTTCTATACAAAATGCCTTAAATAATTCATTTATAAAAATA
* * *
11156074 TAAAAA-ATTATTTAAGGTATTTTTTGTATAGAAACACTTAAAAAAAATCTATTTATAACAATAT
66 TAAAAAGATTATTTAAGGTATTTTTTGTAAAAAAACACTT-AAAAAAATCTATTTATAAAAATAT
* * * * *
11156138 AAAAAGATTATTTAAAGCATTTTTTGTACAAAAAAGCTTTATATAATCCTTTTATAAAAATATTA
130 AAAAAGATTATTTAAAGCATTTTTTATACAAAAAAGCCTTAAATAATCATTTTATAAAAATAATA
11156203 ACCCTAAAACC-TAAAA
195 ACCC-AAAACCTTAAAA
* *
11156219 TATAAAAGGATTATTTAAGGCATATTTTGTATA-AAAATGCCTTAAAT-ATTCATTTATAAAAAT
1 TATAAAAGGATTATTTAAGAC-TATTTTCTATACAAAATGCCTTAAATAATTCATTTATAAAAAT
* *
11156282 ATAAAAAGATTATTTAAGGTATTTTTTTTGTAAAAAAAGACCTT-AAATAATCTATTTATAAAAA
65 ATAAAAAGATTATTTAAGGTA--TTTTTTGTAAAAAAACA-CTTAAAAAAATCTATTTATAAAAA
* * *
11156346 TATAAAATGATTATTTAAGGCATTTTTTATACAAAAATGCCTTAAATAATCATTTTATAAAAATA
127 TATAAAAAGATTATTTAAAGCATTTTTTATACAAAAAAGCCTTAAATAATCATTTTATAAAAATA
*
11156411 ATAATCCAAAACCTTAAAA
192 ATAACCCAAAACCTTAAAA
*
11156430 TATAAAAGGATTATTTAAGACT-TTTTCTATACAGAAAGGCCTTAAATAATTCATTTATAAAAAT
1 TATAAAAGGATTATTTAAGACTATTTTCTATACA-AAATGCCTTAAATAATTCATTTATAAAAAT
11156494 A-AAAAATGATTATTTAAGG
65 ATAAAAA-GATTATTTAAGG
11156513 CAATTCTTCA
Statistics
Matches: 259, Mismatches: 24, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
209 47 0.18
210 33 0.13
211 133 0.51
212 43 0.17
213 3 0.01
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.38
Consensus pattern (210 bp):
TATAAAAGGATTATTTAAGACTATTTTCTATACAAAATGCCTTAAATAATTCATTTATAAAAATA
TAAAAAGATTATTTAAGGTATTTTTTGTAAAAAAACACTTAAAAAAATCTATTTATAAAAATATA
AAAAGATTATTTAAAGCATTTTTTATACAAAAAAGCCTTAAATAATCATTTTATAAAAATAATAA
CCCAAAACCTTAAAA
Found at i:11156436 original size:84 final size:84
Alignment explanation
Indices: 11156342--11156495 Score: 240
Period size: 84 Copynumber: 1.8 Consensus size: 84
11156332 TCTATTTATA
* * *
11156342 AAAATATAAAATGATTATTTAAGGCATTTTT-TATACAAAAATGCCTTAAATAA-TCATTTTATA
1 AAAATATAAAAGGATTATTTAAGAC-TTTTTCTATACAAAAAGGCCTTAAATAATTCA-TTTATA
11156405 AAAATAATAATCCAAAACCTT
64 AAAATAATAATCCAAAACCTT
*
11156426 AAAATATAAAAGGATTATTTAAGACTTTTTCTATACAGAAAGGCCTTAAATAATTCATTTATAAA
1 AAAATATAAAAGGATTATTTAAGACTTTTTCTATACAAAAAGGCCTTAAATAATTCATTTATAAA
11156491 AATAA
66 AATAA
11156496 AAAATGATTA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
83 5 0.08
84 56 0.88
85 3 0.05
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.35
Consensus pattern (84 bp):
AAAATATAAAAGGATTATTTAAGACTTTTTCTATACAAAAAGGCCTTAAATAATTCATTTATAAA
AATAATAATCCAAAACCTT
Found at i:11157748 original size:15 final size:17
Alignment explanation
Indices: 11157730--11157763 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
11157720 ACGTAATTTA
11157730 TATTTAA-AAAT-TATT
1 TATTTAATAAATATATT
11157745 TATTTAATAAATATATT
1 TATTTAATAAATATATT
11157762 TA
1 TA
11157764 ATAAGTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 4 0.24
17 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTAATAAATATATT
Found at i:11162357 original size:18 final size:18
Alignment explanation
Indices: 11162334--11162370 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
11162324 ATATCATTTA
11162334 TAATTATTGTA-TTATAAT
1 TAATTATT-TATTTATAAT
11162352 TAATTATTTATTTATAAT
1 TAATTATTTATTTATAAT
11162370 T
1 T
11162371 TAAAATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TAATTATTTATTTATAAT
Found at i:11162379 original size:21 final size:20
Alignment explanation
Indices: 11162329--11162379 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 20
11162319 GGCACATATC
11162329 ATTTATAATTATTGTATTATA
1 ATTTA-AATTATTGTATTATA
11162350 A-TT-AATTATT-TATTTATA
1 ATTTAAATTATTGTA-TTATA
11162368 ATTTAAAATTAT
1 ATTT-AAATTAT
11162380 GAAAGATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.08
18 13 0.50
19 2 0.08
20 2 0.08
21 7 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTAAATTATTGTATTATA
Found at i:11165384 original size:2 final size:2
Alignment explanation
Indices: 11165377--11165403 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11165367 TAATTTGAAT
11165377 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11165404 TTGTGAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11169202 original size:3 final size:3
Alignment explanation
Indices: 11169196--11169228 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
11169186 TTATTTTTTC
11169196 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11169229 GATTAGAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11169341 original size:59 final size:58
Alignment explanation
Indices: 11169277--11169398 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
11169267 TTTTAAATCA
* * * *
11169277 TTTTCTT-TAAATAAAATTCCAAAAAAAGATATTTTTGAGTAAAATTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTCC-AAAAAA-ATATTTTCGAGGAAAAGTTGAAAGTATCAAT
** * *
11169336 TTTTCTTGAAAATAAGTTTTCTAAAAAATATTTTCGAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTCCAAAAAAATATTTTCGAGGAAAAGTTGAAAGTATCAAT
11169394 TTTTC
1 TTTTC
11169399 CTTATACAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 33 0.61
59 12 0.22
60 9 0.17
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (58 bp):
TTTTCTTGAAAATAAAATTCCAAAAAAATATTTTCGAGGAAAAGTTGAAAGTATCAAT
Found at i:11170593 original size:349 final size:350
Alignment explanation
Indices: 11170057--11174105 Score: 1291
Period size: 357 Copynumber: 11.4 Consensus size: 350
11170047 TATGACTATT
* * * * * * * *
11170057 TGAATAATTATCTATTTAAAATAAATATAACTTTTTGTTTTATCATAAAATAATTGTTTCAGTTT
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAATTC
* * * * * * * * * * *
11170122 ATAAAAGCTTATTT-GAAATACAATGATATTACTTTATTGATACTTCAAAAAATGATATGTTAGA
66 ATTAAAGCTTATTTCGAAATAAAATTATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGA
* *** * * * * * *
11170186 GATTTAAAAAATAAGTAAATTTATCAAATTGGTTCAAAAAATTATGGCCATTTAAACAATTATCT
131 GATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAAACAATTATCT
* * * *
11170251 ATTTCAAATTGTTGCAAACTTTTGTTTTTTCATAAAACAATTGTTTTCATCATACAAGCCTATTC
196 ATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCATCATACAAGCTTATTC
* * *
11170316 GGAAGAAAATAATACTAATTTATTAATATTTCAAAAATTAATATGTAGGAGATTTAAAAAATAAA
261 GGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AA
* * *
11170381 TCTGTTTATTAAACCAATTCTT-ATT-
325 TATGTTTATCAAATCAATT-TTAATTA
* * *
11170406 TGAACAATTATCTATTTTAAATCATTATAACCTTTTGTTCTGTTATAAAATAATTGTTTCAATTC
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAATTC
* * *
11170471 ATTTAAGCTTATTTCG-AATAAAATTATACTAATTTAATAATATTTCAAAAATTAATAACTAAGA
66 ATTAAAGCTTATTTCGAAATAAAATTATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGA
** * * * *
11170535 GATTTAAAAAATAAATCTGTTTGTCAAAGC-AGTTCAAACAATTAAGACTATATAAACAATTATT
131 GATTTAAAAAATAAATCTGTTTACCAAA-CTAGTTCAAATAATTATGACTATTTAAACAATTATC
* * *** * * * *
11170599 TCTTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATAGATGGTTA
195 TATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCA--TCATACAAGCTTA
* * * * * *
11170663 TTTGAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTAAGTGATTTAAAAAGT
258 TTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAT
* *
11170728 GAATATGTTTATCGAATCAGTTTAAATAATTA
323 -AATATGTTTATCAAATCAATTT---TAATTA
** ** * ** * * * *
11170760 TGGCCACGT-CCTATTTCAAATTGTTATTACCTTTTGTTTTGTCATATAACAATTGTATTTGAA-
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTG--TTTCAAT
* * *
11170823 -CATTTAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATCTTTCAAAAATT-A-AA--AA
64 TCATTAAAGCTTATTTCGAAATAAAATTATACTAATTTATTAATATTTCAAAAATTAATAAGTAA
* * *
11170882 GAGATTTAAAAAATAAATTTGTTTACCAAACTAGTTCAAATAGTTATGACTATTTGAAC-ATGTA
129 GAGATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAAACAAT-TA
* * * ** *
11170946 --AACCTT-AAATCGTTGCAACCTTTTTGTTTTATCATAAAACAATTATTTTTGTTTATACAAGC
193 TCTA-TTTCAAATCGTTGCAACC-TTTTGTTTTATCATAAAACAATT-GTTTTCATCATACAAGC
* * * *
11171008 TTATTCGGAATAAAATAATACT-ATTCTAATAATATTCCAAAAATTAATAACTAAGAGAATTAAA
255 TTATTCGGAATAAAATAATACTAATT-TATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAA
* * *
11171072 AAATAATTTATTTAATGAACTAGTTCAAGTATTTAAGTTTATA
319 AAATAATATGTTT-ATCAA--A--TCAA-T-TTTAA---T-TA
* * *
11171115 TGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAATAAGTTTTTTTGAAT
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAA--TTGTTTCAAT
* * * *
11171180 TCA-TAATAGCTTATTTTG-AATAGAA-TAAAATGAATTTATTAATATTTCAAAAATTAATAAGT
64 TCATTAA-AGCTTATTTCGAAATAAAATTATACT-AATTTATTAATATTTCAAAAATTAATAAGT
* * *
11171242 AAGAGATTTAAAAAATAATTCTGTTTACCTAACTAGTTCAAATAATTATGAC-ATTTTGAACAAT
127 AAGAGATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTA-TTTAAACAAT
* ** ** * * * * * ** ** *
11171306 TATCTATTTCAAATCATTGTGACGATTTGTTTTGTTATAAAAGAAATATTTTGTTCATGTAAGTT
191 TATCTATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCATCATACAAGCT
* ** * *
11171371 TGTTC-G----AAATAA-AGC-AACCTATTAATATTTC---AAGTATTAA-TAAGAGATTTAAAA
256 TATTCGGAATAAAATAATA-CTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAA
* * * *
11171425 AATAAATCTATTTATCAAACTAGTTCAAATAGTTATGACTA
320 AAT-AATATGTTTATC-AA--A--TC-AAT--TT-TAATTA
* * * ** * * * * *
11171466 TTTAAGTAATTATTTATTTCAAATTGTTATAACTTTTTGTTTTGTTATAAAACAATTTTTTCTAT
1 -TGAA-CAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAAT
** * * * * * **
11171531 TCATGCATGCTTA--TCAGGATTAAAATAATACTAATTTATTAATATTTTAGCAATTAATAAGTA
64 TCATTAAAGCTTATTTC-GAAATAAAATTATACTAATTTATTAATATTTCAAAAATTAATAAGTA
* * * * * * * ** * * * *
11171594 A-ACAATTTAAAAAATAACTATGTTTATCGAATTAGATCAAATAAACATGATTTTTTGAATAATT
128 AGA-GATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAAACAATT
*** * * * *
11171658 ATCTATTTCAAATCGTTATGACCTTTTATTTTGTCATAAAAGAATTG-TTTCAGTTCATATAAGC
192 ATCTATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCA--TCATACAAGC
* ** * * * * * *
11171722 TTAATCAAAATAAAATAATGCTAA-TTATTTAGTAATCCAAAAATTAATAA-TAAAAATATTTAA
255 TTATTCGGAATAAAATAATACTAATTTA-TTAATATTTCAAAAATTAATAAGT-AAGAGATTT-A
* * **
11171785 AAAAATTATTTTGTTTATTGAA-CAAGTTTAAATAATTATGA
317 AAAAA-TAATATGTTTATCAAATCAA-TTT---TAA-T-T-A
** ** * * * *
11171826 TTGTTTGAACAATTATCTATTAAAAATCGCTATAACTTTTTTGTTGTGTCATAAAAGAATTTTTT
1 -----TGAACAATTATCTATTTCAAATCATTATAAC-CTTTTGTTTTGTCATAAAATAATTGTTT
* * * * *
11171891 CTATTCA-TACAAACTTATTTC-AAATAATATAATACAAATTTAATTAATA-TT-AAGACAATTA
60 CAATTCATTA-AAGCTTATTTCGAAATAAAATTATACTAATTT-ATTAATATTTCAA-A-AATTA
* * * * * * * * * * * *
11171952 ATAGGTAAAATATTTAAAAAATAAATTTATTTACCGAACAAGTTCAAATAGTCAAGACTATCTGA
121 ATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAA
* * *** * * * * * **
11172017 ATAATTATCTATTTCAAATCATTATGACATTTTCTTTTGTAAT-AAATAATTGTTTTGGTTC-TA
186 ACAATTATCTATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTT-CATCAT-
* * * * * *
11172080 ATAAGTTTATT-TGAAGTAAAATAATGCTAATTTATTAATA-TTCTAAAAATTAATGAGCAAGAG
249 ACAAGCTTATTCGGAA-TAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAG
** * * * * *
11172143 AACT-AAAAATGGAATCTATTTACCTAATAAGTTCAAATAATTATGACTATC
312 ATTTAAAAAAT--AATATGTTTA--TCA-AA--TC-AAT--TT-T-AAT-TA
* * * * * **
11172194 TGAACAATTATCTATTTCAAAACATTATGACCTTTTGTTTTGCCACAAAACAATTGATTT-TGTT
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTG-TTTCAATT
** * * * *
11172258 CATGCAAGCTTA-TT--AATTAAAATAAT-TTAAATTTATT-ATA-TTCTAAAATT--TAA-T--
65 CATTAAAGCTTATTTCGAAATAAAATTATACT-AATTTATTAATATTTCAAAAATTAATAAGTAA
* * * * * * *
11172312 ---A---AAAAAAT---T-TATTTTCTAAGC-ACGTTTAAATAGTTATGACTATTTGAACAATTA
129 GAGATTTAAAAAATAAATCTGTTTACCAAACTA-GTTCAAATAATTATGACTATTTAAACAATTA
* * ** * * * * *
11172366 TCTATTTTAAATTGTAATG--ATTTTTTCTTTTGTCAT-----TATT-TCTGTC--CATAAAAGC
193 TCTATTTCAAATCGT--TGCAACCTTTTGTTTTATCATAAAACAATTGT-TTTCATCATACAAGC
** * * * *
11172421 TTATTCAAAATAAAAATAATACTAATTTATCAA-AATTCTAAAAATTAATAAGTAAAAGAATTAA
255 TTATTCGGAAT-AAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAA
* * * *
11172485 AAAATAAATCTATTTAACGAGTGAGTTCAAATAGTTATGACTATT-
318 AAAAT-AATATGTTTATC-A---A-ATC-AAT--TT-T-A--ATTA
* * ** *
11172530 TGAACAATTATGTATTTCAAATCATTATGATATTTTGTTTTGTCATAAAATAATTGTTTCTATTC
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAATTC
* * * *
11172595 A-TACAAG--TATATCCGAAATAAAATAATATTAATTTATTAATA-TTCTAAAAATTAATAAGTT
66 ATTA-AAGCTTAT-TTCGAAATAAAATTATACTAATTTATTAATATTTC-AAAAATTAATAAGTA
* * * * * * * * * * *
11172656 AGAGACTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTCATGTCCATTTGAACTATTA
128 AGAGATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAAACAATTA
* * ** * * * * **
11172721 TTTATTTCAAATCATTATAACATTTTGTTTTGTTC-TAAAACGATTGTTTTTATTCATACAAAAT
193 TCTATTTCAAATCGTTGCAACCTTTTGTTTT-ATCATAAAACAATTGTTTTCA-TCATACAAGCT
** * * *
11172785 TATTCAAAATAAAATAATACTAATTTATTAATATTTTAAAAA-T--TAA-TAAGCGATTTAAATA
256 TATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * *
11172846 CTAAATCTATTTACCAAACCGGTTTAAATAGTTATGACTATT-
321 AT-AATATGTTTATCAAA------TCAAT--TT-T-A--ATTA
* * * *** ***
11172888 TCAACAATTATCTATCTCAAATCAGTATGGTC-TTTGTTTTGTCATAAAATAATTGTTTTTGTTC
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAATTC
* * * * * ** ** *
11172952 A-TATAAGCTTTTTTTGGAGTAAAA-TATTGCTAAACTAACAATA-TTCTAAAATT--TAA-TAA
66 ATTA-AAGCTTATTTCGAAATAAAATTA-TACTAATTTATTAATATTTCAAAAATTAATAAGTAA
* ** * ** * * * **
11173011 GAGATTTAAAAAATAAATATGTTTACTGAACCAGTT-ATAATGGTTAAGACTA-TTGAGCAGCTA
129 GAGATTTAAAAAATAAATCTGTTTACCAAACTAGTTCA-AATAATTATGACTATTTAAACAATTA
* * * * * * * *
11173074 TCTATTTCAAATCATT-CTGACCTTTTATTTTGTTAT-AAA-AATCTTTTTTAAGTTCATACAAA
193 TCTATTTCAAATCGTTGC-AACCTTTTGTTTTATCATAAAACAAT-TGTTTTCA--TCATACAAG
* * * * ** * *
11173136 CTAATTTGAAACAAAATAATAC-AATTTTATTAGCA-TTCAAAAAATTAATAAGCAAGAAATTTT
254 CTTATTCGGAATAAAATAATACTAA-TTTATTAATATTTC-AAAAATTAATAAGTAAGAGA-TTT
* *
11173199 AAAAAATAAATATGTTTACCAAA-CGAGTTTAAATAGTTATGACTA
316 AAAAAAT-AATATGTTTATCAAATC-AATTT---TA---AT---TA
* * * * * * *
11173244 TTTAAACAATTATCTATTTAAAATTATTATGACCTTTTGTTTTATTATAAAATAATTGTTTCAGT
1 --TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAAT
* ** * * * **
11173309 TC-GTAAGAGCTTA-CCCAAAAAAAAATAATA-TTCTTTATTAATATTTCAAAAATTGAA-AAGT
64 TCATTAA-AGCTTATTTCGAAATAAAATTATACTAATTTATTAATATTTCAAAAATT-AATAAGT
** * * * * * * * * *
11173370 TGGAGATTTAAAAAATAAATCAGTTTATCAAA-TCAATTCATATAATTATGGCCATTTGAATAGT
127 AAGAGATTTAAAAAATAAATCTGTTTACCAAACT-AGTTCAAATAATTATGACTATTTAAACAAT
* * * * *
11173434 TATCTATTTCAAATTGTTATG-AA-CTTTTGTTTTGTTATAAAATAATTTTTTTCATCATACAAG
191 TATCTATTTCAAATCG-T-TGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCATCATACAAG
* * * *
11173497 CCTATTCAGAATAAAATAACACTAATTTATTAATATTTCAAAAATTAAT-AG---GAGAATTAAA
254 CTTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAA
* * * * *
11173558 AAATAAATATGCTTACTGAACCATTTTAAATAGTTATTACTGTT
319 AAAT-AATATGTTTA-TCAA--A---T-CA-A-TT-TTAAT-TA
* * ** * * *
11173602 TGAATAATTATATATTTCAAATTGTTATAACATTTTGTTTTGTCATAAAATAATTATTT-ATGTT
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCA-ATT
* * * * * * *
11173666 CA-TACAAGCTTATTT-GTAATAAAATAATACTAATATAATAATATTAT-GAAAACTAATAACTA
65 CATTA-AAGCTTATTTCGAAATAAAATTATACTAATTTATTAATATT-TCAAAAATTAATAAGTA
* * * * * * * * * *
11173728 AGATATTTAAAAAATAAATTTGTTTGCCGAACCAAG-TCAAATAGTTGA-GGCTATATGAATAAT
128 AGAGATTTAAAAAATAAATCTGTTTACC-AAACTAGTTCAAATAATT-ATGACTATTTAAACAAT
* * *** * * * ** * *
11173791 GATCTATTTCAAATTGTTATGA-CTTTATGTTTTTTCGTAAAACAAATGTTTTGTTCATATAAGT
191 TATCTATTTCAAATCGTTGCAACCTTT-TGTTTTATCATAAAACAATTGTTTTCATCATACAAGC
** * *
11173855 TTATTTTGAATAAAATAATATTAATTTATTAATATTTTAAAAA-T--TAA-TAAGAGATTTAAAA
255 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAA
* *
11173916 AATAAATTTTTTTATCAAACCAATTCAAATGGTTATAACAATT-
320 AAT-AATATGTTTATC--A--AA-TC-AAT--TT-T---AATTA
* * * * * *
11173959 TGAACAATTATTTATTTCAAATCATTATGACCATTTGTTTTGTC-TAAAAACAATTATTTCTATT
1 TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCAT-AAAATAATTGTTTCAATT
* * * * * * * * *
11174023 -AATATAGTCTGATTT-GGAATAAAGTAATGCTAATTTATTGATA-TTCTAAAAATTAATAAGCA
65 CATTAAAG-CTTATTTCGAAATAAAATTATACTAATTTATTAATATTTC-AAAAATTAATAAGTA
* *
11174085 ATG-GATTTGAAAAATGAATCT
128 A-GAGATTTAAAAAATAAATCT
11174106 ATTAGCTTGA
Statistics
Matches: 2803, Mismatches: 630, Indels: 526
0.71 0.16 0.13
Matches are distributed among these distances:
334 2 0.00
335 16 0.01
336 126 0.04
337 9 0.00
338 25 0.01
339 8 0.00
340 6 0.00
341 1 0.00
342 63 0.02
343 2 0.00
344 1 0.00
346 7 0.00
347 20 0.01
348 96 0.03
349 245 0.09
350 93 0.03
351 154 0.05
352 67 0.02
353 228 0.08
354 59 0.02
355 82 0.03
356 173 0.06
357 360 0.13
358 213 0.08
359 54 0.02
360 30 0.01
361 93 0.03
362 182 0.06
363 133 0.05
364 129 0.05
365 108 0.04
366 6 0.00
369 7 0.00
370 3 0.00
371 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (350 bp):
TGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCAATTC
ATTAAAGCTTATTTCGAAATAAAATTATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGA
GATTTAAAAAATAAATCTGTTTACCAAACTAGTTCAAATAATTATGACTATTTAAACAATTATCT
ATTTCAAATCGTTGCAACCTTTTGTTTTATCATAAAACAATTGTTTTCATCATACAAGCTTATTC
GGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAT
ATGTTTATCAAATCAATTTTAATTA
Found at i:11170722 original size:181 final size:180
Alignment explanation
Indices: 11169908--11174210 Score: 2532
Period size: 181 Copynumber: 24.2 Consensus size: 180
11169898 TTATGATAGT
* * * * *
11169908 TTTTGTTTAGTCATAAAATAATAT-TTTCAATTCATACATGCTT-TTTCAAAGTAAAATAATACT
1 TTTTGTTTTGTCATAAAACAAT-TGTTTCAGTTCATACAAGCTTATTTGAAA-TAAAATAATACT
* ** * * * *
11169971 AATTTATTAACATTCAAAAAATTAATAAAG-AACAAAATTT-AAAAATAAATTTGTTTACCGAAC
64 AATTTATTAATATTTTAAAAATTAAT-AAGTAA-GAGATTTAAAAAATAAATCTGTTTATCGAAC
* * * * * * *
11170034 AAGTTTAAATAGTTATGACTATTTGAATAATTATCTATTTAAAATAAATATAACT
127 -AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * * *
11170089 TTTTGTTTTATCATAAAATAATTGTTTCAGTTTATAAAAGCTTATTTGAAATACAATGATATTAC
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAA
* * * * * * * * *** * **
11170154 TTTATTGATACTTCAAAAAATGATATGTTAGAGATTTAAAAAATAAGTAAATTTATCAAATTGGT
66 TTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CAGT
* * * * * ** *** *
11170219 TCAAAAAATTATGGCCATTTAAACAATTATCTATTTCAAATTGTTGCAAAC
130 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * *
11170270 TTTTGTTTTTTCATAAAACAATTGTTTTCA--TCATACAAGCCTATTCGGAAGAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTA
* * * *
11170333 ATTTATTAATATTTCAAAAATTAATATGTAGGAGATTTAAAAAATAAATCTGTTTAT-TAA-A--
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAACAGT
* * * *
11170394 -C-CA-A-TTCT---TATTTGAACAATTATCTATTTTAAATCATTATAACC
130 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * ** *
11170438 TTTTGTTCTGTTATAAAATAATTGTTTCAATTCATTTAAGCTTATTTCG-AATAAAATTATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTT-GAAATAAAATAATACTA
* * * * *
11170502 ATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTGTCAAAGCAG
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CAG
* * * * * * *
11170567 TTCAAACAATTAAGACTATATAAACAATTATTTCTTTCAAATCATTATGACC
129 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * *
11170619 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAGATGGTTATTTGAAATAAAATAATATTAA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAA
* * * *
11170684 TTTATTAATATTTTAAAAATTAATAAGTAAGTGATTTAAAAAGTGAATATGTTTATCGAATCAGT
66 TTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CAGT
* ** ** * ** *
11170749 TTAAATA---AT---TA--TGGCCACGT-CCTATTTCAAATTGTTATTACC
130 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * ** ** *
11170791 TTTTGTTTTGTCATATAACAATTGTATT-TGAACATTTAAGCTTATTCGAAATAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGT-TTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTA
* * * * *
11170855 ATTTATTAATCTTTCAAAAATT-A-AA--AAGAGATTTAAAAAATAAATTTGTTTACCAAACTAG
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC-AG
* * * ***
11170916 TTCAAATAGTTATGACTATTTGAAC-ATGTA--AACCTT-AAATCGTTGCAACC
129 TTCAAATAGTTATGACTATTTGAACAAT-TATCTA-TTTCAAATCATTATGACC
* * ** * * *
11170966 TTTTTGTTTTATCATAAAACAATTATTTTTGTTTATACAAGCTTATTCGGAATAAAATAATACT-
1 -TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTA
* ** * * * *
11171030 ATTCTAATAATATTCCAAAAATTAATAACTAAGAGAATTAAAAAAT-AATTTATTTAAT-GAACT
65 ATT-TATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTT-ATCGAAC-
* * * ** *
11171093 AGTTCAAGTATTTAAGTTTATATGAACAATTATCTATTTCAAATCATTATGACC
127 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * *
11171147 TTTTGTTTTGTCATAAAATAAGTTTTTTTGAATTCATA-ATAGCTTATTTTG-AATAGAATAA-A
1 TTTTGTTTTGTCATAAAACAA--TTGTTTCAGTTCATACA-AGCTTA-TTTGAAATAAAATAATA
* * * * *
11171209 ATGAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAATTCTGTTTACCTAA
62 CT-AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * *
11171274 CTAGTTCAAATAATTATGAC-ATTTTGAACAATTATCTATTTCAAATCATTGTGACG
126 C-AGTTCAAATAGTTATGACTA-TTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * ** * * * *
11171330 ATTTGTTTTGTTATAAAAGAAATATTT-TGTTCATGTAAGTTTGTTCGAAAT---A-AA-GC-AA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAA
** * * * * *
11171388 CCTATTAATA-TTT--CAAGTATTAA-TAAGAGATTTAAAAAATAAATCTATTTATCAAACTAGT
66 TTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC-AGT
* * ** * *
11171449 TCAAATAGTTATGACTATTT-AAGTAATTATTTATTTCAAATTGTTATAACT
130 TCAAATAGTTATGACTATTTGAA-CAATTATCTATTTCAAATCATTATGACC
* * * * ** * *
11171500 TTTTGTTTTGTTATAAAACAATTTTTTCTA-TTCATGCATGCTTATCAGGATTAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAAGCTTATTTGAAATAAAATAATACTA
** * * * *
11171564 ATTTATTAATATTTTAGCAATTAATAAGTAA-ACAATTTAAAAAATAACTATGTTTATCGAATTA
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGA-GATTTAAAAAATAAATCTGTTTATCGAA-CA
* *** * * * *
11171628 GATCAAATAAACATGATTTTTTGAATAATTATCTATTTCAAATCGTTATGACC
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * ** *
11171681 TTTTATTTTGTCATAAAAGAATTGTTTCAGTTCATATAAGCTTAATCAAAATAAAATAATGCTAA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAA
* * ** * * * * * *
11171746 -TTATTTAGTAATCCAAAAATTAATAA-TAAAAATATTTAAAAAAATTATTTTGTTTATTGAACA
66 TTTA-TTAATATTTTAAAAATTAATAAGT-AAGAGATTT-AAAAAATAAATCTGTTTATCGAAC-
* * * * ** ** * *
11171809 AGTTTAAATAATTATGATTGTTTGAACAATTATCTATTAAAAATCGCTATAACTT
127 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC-C
* * * * * * *
11171864 TTTTGTTGTGTCATAAAAGAATTTTTTCTA-TTCATACAAACTTATTTCAAATAATATAATACAA
1 TTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAAGCTTATTTGAAATAAAATAATACTA
* * * * * *
11171928 ATTTAATTAATA--TTAAGACAATTAATAGGTAAAATATTTAAAAAATAAATTTATTTACCGAAC
65 ATTT-ATTAATATTTTAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC
* * * * *
11171991 AAGTTCAAATAGTCAAGACTATCTGAATAATTATCTATTTCAAATCATTATGACA
127 -AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * ** * * * *
11172046 TTTTCTTTTGTAAT-AAATAATTGTTTTGGTTC-TAATAAGTTTATTTGAAGTAAAATAATGCTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCAT-ACAAGCTTATTTGAAATAAAATAATACTA
* * * ** * * * * *
11172109 ATTTATTAATATTCTAAAAATTAATGAGCAAGAGAACT-AAAAATGGAATCTATTTACCTAATAA
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAATCTGTTTATCGAA-CA
* * *
11172173 GTTCAAATAATTATGACTATCTGAACAATTATCTATTTCAAAACATTATGACC
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * *
11172226 TTTTGTTTTGCCACAAAACAATTGATTT-TGTTCATGCAAGCTTA-TT-AATTAAAATAAT-TTA
1 TTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACT-
* * * * * *
11172287 AATTTATT-ATATTCTAAAATTTAATAA--AA-AAATTT-----AT---T-T-TCTA-AGCAC-G
64 AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAACAG
* * ** * **
11172336 TTTAAATAGTTATGACTATTTGAACAATTATCTATTTTAAATTGTAATGATT
129 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * **
11172388 TTTTCTTTTG---T----C-ATTATTTCTGTCCATAAAAGCTTATTCAAAATAAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAAT-AAAATAATACTA
* * * * * * * **
11172445 ATTTATCAAAATTCTAAAAATTAATAAGTAAAAGAATTAAAAAATAAATCTATTTAACGAGTGAG
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGA-ACAG
* **
11172510 TTCAAATAGTTATGACTATTTGAACAATTATGTATTTCAAATCATTATGATA
129 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* ** *
11172562 TTTTGTTTTGTCATAAAATAATTGTTTCTA-TTCATACAAG-TATATCCGAAATAAAATAATATT
1 TTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAAGCT-TATTTGAAATAAAATAATACT
* * * *
11172625 AATTTATTAATATTCTAAAAATTAATAAGTTAGAGACTTAAAAAATAAATCTATTTATCGAACAA
64 AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC-A
* * * * * * *
11172690 GTTCAAATAGTCATGTCCATTTGAACTATTATTTATTTCAAATCATTATAACA
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * ** **
11172743 TTTTGTTTTGTTC-TAAAACGATTGTTTTTA-TTCATACAAAATTATTCAAAATAAAATAATACT
1 TTTTGTTTTG-TCATAAAACAATTG-TTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACT
* * * * * * *
11172806 AATTTATTAATATTTTAAAAA-T--TAA-TAAGCGATTTAAATACTAAATCTATTTACCAAACCG
64 AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CA
* * * * **
11172867 GTTTAAATAGTTATGACTATTTCAACAATTATCTATCTCAAATCAGTATGGTC
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* ** * * * * * *
11172920 -TTTGTTTTGTCATAAAATAATTGTTTTTGTTCATATAAGCTTTTTTTGGAGTAAAATATTGCTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGC-TTATTTGAAATAAAATAATACTA
** ** * *
11172984 AACTAACAATATTCT-AAAATT--TAA-TAAGAGATTTAAAAAATAAATATGTTTA-CTGAACCA
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATC-GAA-CA
* * * ** *
11173044 GTT-ATAATGGTTAAGACTA-TTGAGCAGCTATCTATTTCAAATCATTCTGACC
128 GTTCA-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * * *
11173096 TTTTATTTTGTTATAAAA-ATCTTTTTTAAGTTCATACAAACTAATTTGAAACAAAATAATAC-A
1 TTTTGTTTTGTCATAAAACA-ATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTA
** ** * * * * *
11173159 ATTTTATTAGCATTCAAAAAATTAATAAGCAAGAAATTTTAAAAAATAAATATGTTTACCAAACG
65 A-TTTATTAATATTTTAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATCTGTTTATCGAAC-
* * * *
11173224 AGTTTAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATTATTATGACC
127 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * **** * *
11173278 TTTTGTTTTATTATAAAATAATTGTTTCAGTTCGTA-AGAGCTTACCCAAAAAAAAATAATA-TT
1 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACA-AGCTTATTTGAAATAAAATAATACTA
* * ** * *
11173341 CTTTATTAATATTTCAAAAATTGAA-AAGTTGGAGATTTAAAAAATAAATCAGTTTATCAAATCA
65 ATTTATTAATATTTTAAAAATT-AATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CA
* * * * * * * ** *
11173405 ATTCATATAATTATGGCCATTTGAATAGTTATCTATTTCAAATTGTTATGAAC
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * *
11173458 TTTTGTTTTGTTATAAAATAATTTTTTTCA--TCATACAAGCCTA-TTCAGAATAAAATAACACT
1 TTTTGTTTTGTCATAAAACAA-TTGTTTCAGTTCATACAAGCTTATTTGA-AATAAAATAATACT
* * * *
11173520 AATTTATTAATATTTCAAAAATTAAT-AG---GAGAATTAAAAAATAAATATGCTTA-CTGAACC
64 AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATC-GAA-C
* * * * * * ** * *
11173580 ATTTTAAATAGTTATTACTGTTTGAATAATTATATATTTCAAATTGTTATAACA
127 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * *
11173634 TTTTGTTTTGTCATAAAATAATTATTT-ATGTTCATACAAGCTTATTTGTAATAAAATAATACTA
1 TTTTGTTTTGTCATAAAACAATTGTTTCA-GTTCATACAAGCTTATTTGAAATAAAATAATACTA
* * * * * * * * **
11173698 ATATAATAATATTATGAAAACTAATAACTAAGATATTTAAAAAATAAATTTGTTTGCCGAACCAA
65 ATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-C-A
* * * * **
11173763 G-TCAAATAGTTGA-GGCTATATGAATAATGATCTATTTCAAATTGTTATGA-C
128 GTTCAAATAGTT-ATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * *
11173814 TTTATGTTTTTTCGTAAAACAAATGTTT-TGTTCATATAAGTTTATTTTG-AATAAAATAATATT
1 TTT-TGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTA-TTTGAAATAAAATAATACT
* * *
11173877 AATTTATTAATATTTTAAAAA-T--TAA-TAAGAGATTTAAAAAATAAATTTTTTTATCAAACCA
64 AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA-CA
* * * * *
11173938 ATTCAAATGGTTATAACAATTTGAACAATTATTTATTTCAAATCATTATGACC
128 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * * *
11173991 ATTTGTTTTGTC-TAAAAACAATTATTTCTA-TTAATA-TAGTCTGATTTGGAATAAAGTAATGC
1 TTTTGTTTTGTCAT-AAAACAATTGTTTC-AGTTCATACAAG-CTTATTTGAAATAAAATAATAC
* * * * * * *
11174053 TAATTTATTGATATTCTAAAAATTAATAAGCAATG-GATTTGAAAAATGAATCT-ATTAGCTTGA
63 TAATTTATTAATATTTTAAAAATTAATAAGTAA-GAGATTTAAAAAATAAATCTGTTTA--TCGA
* * * * * *
11174116 CCAGTAT-AAATAGTTATAATTGTTTAAACAATTATCTATTTCAAAGCATTATGACC
125 ACAGT-TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
*
11174172 TTTTGTTTTG-CTACAAAACAATTGTTTCTA-TTCATACAA
1 TTTTGTTTTGTC-ATAAAACAATTGTTTC-AGTTCATACAA
11174211 ACTAACTAGG
Statistics
Matches: 3195, Mismatches: 731, Indels: 391
0.74 0.17 0.09
Matches are distributed among these distances:
153 3 0.00
154 16 0.01
155 2 0.00
156 3 0.00
157 15 0.00
158 18 0.01
160 2 0.00
161 4 0.00
162 52 0.02
164 1 0.00
165 3 0.00
166 3 0.00
167 7 0.00
168 83 0.03
169 80 0.03
170 101 0.03
171 33 0.01
172 90 0.03
173 9 0.00
174 70 0.02
175 41 0.01
176 334 0.10
177 276 0.09
178 35 0.01
179 92 0.03
180 406 0.13
181 925 0.29
182 272 0.09
183 192 0.06
184 25 0.01
185 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (180 bp):
TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATACTAA
TTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAACAGTT
CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
Found at i:11172977 original size:177 final size:177
Alignment explanation
Indices: 11172339--11180634 Score: 3090
Period size: 181 Copynumber: 46.4 Consensus size: 177
11172329 AAGCACGTTT
* ** * ** *
11172339 AAATAGTTATGACTATTTGAACAATTATCTATTTTAAATTGTAATGATTTTTTCTTTTGTCAT--
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * ** * *
11172402 --T-A---TTTCTGTCCATAAAAGCTTATTCAAAATAAAAATAATACTAATTTATCAAAATTCTA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAAT-AAAATAATACTAATTTATTAATATTCTA
* * * ***
11172461 AAAATTAATAAGTAAAAGAATTAAAAAATAAATCTATTTAACGAGTGAGTTC
130 AAAATTAATAAG----AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
*
11172513 AAATAGTTATGACTATTTGAACAATTATGTATTTCAAATCATTATGATA-TTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-ACTTTTGTTTTGTCATA
* * ** *
11172577 AAATAATTGTTTCTATTCATACAAG-TATATCCGAAATAAAATAATATTAATTTATTAATATTCT
65 AAATAATTGTTTTTGTTCATACAAGCT-TATTTGAAATAAAATAATACTAATTTATTAATATTCT
* * * *
11172641 AAAAATTAATAAGTTAGAGACTTAAAAAATAAATCTATTTATCGAACAAGTTC
129 AAAAATTAAT-A---AGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * *
11172694 AAATAGTCATGTCCATTTGAACTATTATTTATTTCAAATCATTAT-AACATTTTGTTTTGTTC-T
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTG-TCAT
** * ** ** *
11172757 AAAACGATTGTTTTTATTCATACAAAATTATTCAAAATAAAATAATACTAATTTATTAATATTTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT
* * * * *
11172822 AAAAATTAATAAGCGATTTAAATACTAAATCTATTTACCAAACCGGTTT
129 AAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * **
11172871 AAATAGTTATGACTATTTCAACAATTATCTATCTCAAATCAGTATGGTC-TTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * * * * ** **
11172935 AATAATTGTTTTTGTTCATATAAGCTTTTTTTGGAGTAAAATATTGCTAAACTAACAATATTCTA
66 AATAATTGTTTTTGTTCATACAAGC-TTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * * **
11173000 AAATTTAATAAGAGATTTAAAAAATAAATATGTTTACTGAACCAGTT-
130 AAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * ** * * * *
11173047 ATAATGGTTAAGACTA-TTGAGCAGCTATCTATTTCAAATCATTCTGACCTTTTATTTTGTTAT-
1 A-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATA
* * * **
11173110 AAA-AATCT-TTTTTAAGTTCATACAAACTAATTTGAAACAAAATAATAC-AATTTTATTAGCAT
65 AAATAAT-TGTTTTT--GTTCATACAAGCTTATTTGAAATAAAATAATACTAA-TTTATTAATAT
* * * * *
11173172 TCAAAAAATTAATAAGCAAGAAATTTTAAAAAATAAATATGTTTACCAAACGAGTTT
126 TCTAAAAATTAATAAG--AG--A-TTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * *
11173229 AAATAGTTATGACTATTTAAACAATTATCTATTTAAAATTATTATGACCTTTTGTTTTATTATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
** * **** * **
11173294 AATAATTGTTTCAGTTCGTA-AGAGCTTACCCAAAAAAAAATAATA-TTCTTTATTAATATT-TC
66 AATAATTGTTTTTGTTCATACA-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * *
11173356 AAAAATTGAA-AAGTTGGAGATTTAAAAAATAAATC-AGTTTATCAAATCAATTC
129 AAAAATT-AATAA----GAGATTTAAAAAATAAATCTA-TTTACCAAACCAGTTC
* * * * * * ** *
11173409 ATATAATTATGGCCATTTGAATAGTTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTTATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
** * * *
11173474 AATAATT-TTTTTCATCATACAAGCCTA-TTCAGAATAAAATAACACTAATTTATTAATATT-TC
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTCT-
* * * ** ** * *
11173536 AAAAATTAATAGGAGAATTAAAAAATAAATATGCTTACTGAACCATTTT
129 AAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * **
11173585 AAATAGTTATTACTGTTTGAATAATTATATATTTCAAATTGTTAT-AACATTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
* * * * * *
11173649 AAATAATTATTTATGTTCATACAAGCTTATTTGTAATAAAATAATACTAATATAATAATATTATG
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * * *
11173714 AAAACTAATAACTAAGATATTTAAAAAATAAATTTGTTTGCCGAACCAAG-TC
129 AAAA--ATTAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACC-AGTTC
* * * * ** * *
11173766 AAATAGTTGA-GGCTATATGAATAATGATCTATTTCAAATTGTTATG-ACTTTATGTTTTTTCGT
1 AAATAGTT-ATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTT-TGTTTTGTCAT
* * * * * *
11173829 AAAACAAATG-TTTTGTTCATATAAGTTTATTTTG-AATAAAATAATATTAATTTATTAATATTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTA-TTTGAAATAAAATAATACTAATTTATTAATATTC
* * * *
11173892 TAAAAATTAATAAGAGATTTAAAAAATAAATTTTTTTATCAAACCAATTC
128 TAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * *
11173942 AAATGGTTATAACAATTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTTTTGTC-TAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT-A
* * * * * * * * * * *
11174006 AAACAATTATTTCTATTAATA-TAGTCTGATTTGGAATAAAGTAATGCTAATTTATTGATATTCT
65 AAATAATTGTTTTTGTTCATACAAG-CTTATTTGAAATAAAATAATACTAATTTATTAATATTCT
* * ***
11174070 AAAAATTAATAAGCAATGGATTTGAAAAATGAATCTA-TTAGCTTGACCAGTAT-
129 AAAAATTAATAAG--A--GATTTAAAAAATAAATCTATTTA-CCAAACCAGT-TC
* * * * * * *
11174123 AAATAGTTATAATTGTTTAAACAATTATCTATTTCAAAGCATTATGACCTTTTGTTTTG-CTACA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTC-ATA
* * * * * * * * * * * ** *
11174187 AAACAATTGTTTCTATTCATACAAACTAACTAGGAAT-GATTAGTAAGAGATTTA--AA-AAT-T
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTA-ATTTATTAATATTCT
** * * * * * * * *
11174247 AAATTGGTTTATCGAACA-AGTTAAAATAGT-TATGACTATTTGAACAATTATCTATTTC
129 AAA--AATTAAT--AAGAGATTTAAAA-AATAAAT--CTATTT-ACCAA--A-CCAGTTC
* * * * * * *
11174305 AAATCA-CTATAACCTATTGTTTTGTCATAAAATATAT-TTTTTCTATTCA-TA-CAAGCTTATT
1 AAAT-AGTTATGA-CTA----TTTG--A-ACAAT-TATCTATTTCAAATCATTATGAA-CTT-TT
* *** * * * * * * *
11174366 -TCAATTAAAATAATACA-AATT-TATTAATATTCAGACAA-C-TA-AT-AAGTAAAA-GAT-TT
54 GT--TTTGTCATAA-A-ATAATTGT-TT-TTGTTCATACAAGCTTATTTGAAATAAAATAATACT
** * * * * ** * ** *
11174422 AA-AAATGAATATGT-T--TACTGAAT-A-AG-TTTAAATAGTTATATCTATTTGAATAATTATT
113 AATTTATTAATAT-TCTAAAAATTAATAAGAGATTTAAA-AAATAAATCTATTT-ACCAA--A-C
* * *
11174480 TATTTT
172 CAGTTC
* * * * *
11174486 AAATTGTTATGACTTTTTG-----TTATGTCA--T-AAAACAAT-TG--CTTTTG---T-TCATA
1 AAATAGTTATGACTATTTGAACAATTATCT-ATTTCAAATCATTATGAACTTTTGTTTTGTCATA
* * * **** * * * ** * * * *
11174536 CAAGCTTATTCAGATTAAAATAATATTAA-TTTA-TT-AATATTTCAACAATTAATAA-GTA-AA
65 -AA-ATAATT--GTTTTTGTTCATA-CAAGCTTATTTGAA-A-TAAAATAA-TACTAATTTATTA
* * * * **** * * *
11174596 AGATTTTAAAAATAAAT-A-TG-TTT----TCCGAA-CAAGTT--CAAA-TAG-TC
122 ATATTCTAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * ** * *
11174640 ATAACCA-TT-TGAATAATT-ATC-------TATTTCAAATTGTTATGACCTTTTGTTTCGTCAT
1 A-AA-TAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* * * * * ** * *
11174695 AAAACAATTGTATTAGTTCATATAGGCTTATTCAAAATAAAATAATACAAATTTATTAATATTCA
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT
* * * * **
11174760 AAAAATTAATGAGTAAGAGATTTAAAATATGAATCTGTTTACCGAATAAGTTC
129 AAAAATT-A--A-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* *
11174813 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* ** *
11174878 AATAATTGTTTCTACTCATACAAGCTTATTTCAAATAAAATAATA-TAAATTTATTAATATT-TC
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATTCT-
* * * * * * **
11174941 AAAAATTAATAAGTAAAAATTTTAAGAATAAATATGTTTTCTGAA-CACGTTC
129 AAAAATTAATAAG---AGATTTAAAAAATAAATCTATTTACCAAACCA-GTTC
* * *
11174993 AAATAGTTATGACTATTTAAACAATTATCTATTTCAAATAATTATG-ACTTTT-TTTTATCAT-A
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* ** *
11175055 AATCAATTGTTTTTGTTCATACAAGTTTATTCAAAATAAAATAATACTAATTTATTAAGATTCTA
66 AAT-AATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * * *
11175120 AAAATTAATAAGCAAAAGATTTAAAACATAAATCTATTTACCGAACGAGTCC
130 AAAATTAATAAG----AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * *
11175172 AAATAGTTATGATTGTTTGAACAATTATTTATTTTAAAT-AGTTATG-A--TTT-TTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGAACTTTTGTTTTGTCATA
* * * * * * ** * *
11175232 AAACAATTATTTCTATTCATATAAGTTTATTCAAAATAAAATAATATTAATCTATTAATATTCTA
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * * ** * *
11175297 AAAATCAATAGTAGGAGATTTAAAAAATAAATTTGTTTACTGAACAAATTC
130 AAAATTAATA--A-GAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * *
11175348 AAATACTCATGTGC-ATTTGAAAAACTATCT-TTTCATATCATTATG-ACATTTTGTTTTGTCAT
1 AAATAGTTATG-ACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCAT
* * ** ** ** * ** *
11175410 AAAACAATTGTTTCTGTTCATGTAAAATTATTCAAAATAAAATAATACTGATCCATTAATATTTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT
* * * * * * * **
11175475 GAAACTTAAGAAAAGGATTTAAAAACTAAATCTGTTTACTAAAATAGTTC
129 AAAAATTAATAAGA-GATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * ** ** *
11175525 AAATAG---T---TA--TGAACAATTATTTATCTCAAATTGTTATGTTCTTTTTTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * * * * * * * *
11175582 AACAATTGTTTCTT-TTTACACTAGTTTATTTGGATTAAAATTATACCAATTTAATAATATT-TC
66 AATAATTGTTT-TTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * * * *
11175645 AAAATTAGTAAGTAACAAATTT--AAAA-AAATTTGTTTGCCAAACCAATTC
129 AAAA--ATTAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * *
11175694 AAATA-TTAGGACCATTAGAACAATTATCTATTTCAAATCATTCTGACCTTTTGTTTAGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * ** ** * * *
11175758 AATAATTATTTTAGTTTGTACAAGCTTATTCAAAATAAAATAATATTAATTTATTAACATTCAAA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTAA
* * * * *
11175823 AAATTAATGAGCAAGATATTTAAAAAAATAAATATGTTTATCAAACAAGTTC
131 AAATTAAT----AAGAGATTT-AAAAAATAAATCTATTTACCAAACCAGTTC
* *
11175875 AAATAGATT-TAACTATTTGAACAATTATCTATTT-AAAGTCAGTATGATA-TTTTGTTTTGTCA
1 AAATAG-TTATGACTATTTGAACAATTATCTATTTCAAA-TCATTATGA-ACTTTTGTTTTGTCA
* ** ** ** * *
11175937 TAAAACAATTGTTTCAGTTCATA-AAATTTATCCGAAACAAAATAATACTACTTTATTAATATT-
63 TAAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTC
* * * **** *
11176000 TCATAAATTAATAAGCAAAAGATTTAAAAACTAAAGCTATTTTTTGAACTAGTTC
128 T-AAAAATTAATAAG----AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * ** * * *
11176055 AAATAGTTATAACTATTTGAATAAATATCAATCTCAAATTGTTATGATC-TTTATTTTCTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * ** * * *
11176119 TACAATTGTTTCTGAACATACAAGCTTATTT-AGATAAAAATAATATTAATTTAATAATATTCTA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAAT-AAAATAATACTAATTTATTAATATTCTA
** * ** *
11176183 AAAATTAATAAGAGATTTAAAAAATAAAAATGTTTGTCGAACCAGTTC
130 AAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * * * * *
11176231 AAATAGTTAAGACTA-TTAAATTAATTATATATTTTAAATCGTTTTGACCTTTTGTTTAGTTATA
1 AAATAGTTATGACTATTTGAA-CAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATA
* ** * * *
11176295 TAATAATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATGCTAATTTATTAACATT-TG
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * * * *
11176359 AAAAGTTAATAAGCATGAGATTTGAAAAATAAATATGTTTACCTGAACAAGTTT
129 AAAAATTAAT-A--A-GAGATTTAAAAAATAAATCTATTTACC-AAACCAGTTC
* * * * *
11176413 AAACAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCATTTGTTTTGTCATCA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* ** * * * * * *
11176478 AACAATTGTTTTCATTCATAAAAGCTTATCTAAAATAAAATAATACTACTTTATTAATATTTTGA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTAA
** * *
11176543 AAATTAATAAGTAAGATACTTAAAAAATAAATC-AGTTTACTGAATCAATTC
131 AAATTAATAAG--AGAT--TTAAAAAATAAATCTA-TTTACCAAACCAGTTC
* * * * * * * * * *
11176594 TAATAATTATGGCCATTT-AATCAACTATCAATTTCAAATCATTATTACCTATTGTTTTGTCATG
1 AAATAGTTATGACTATTTGAA-CAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATA
* * *** * *
11176658 AAACAATTGCTTTTCAACATACAAGCTTTTTTGAAATAAAATAATACTAATTTATTAATATTTCA
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTCT
* * * * ** *
11176723 AGAATTAATTAGTAAGAGTTTTAAAAAGTAAATTTGCTTACCAAACCATTTC
129 A-AA--AATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * *
11176775 AAATAGTTTTAACTATTTCAATAATTATCTATTTTAAATCATTAT-AACTTTTTATTTTGTCATC
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
* * * * * ** * * *
11176839 AAACAATTGGTTCTATTCATACTATTTTATTCGAAATAAAATAATACTAATTTAATAATATTCCA
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
** * * * ** *
11176904 AAGCTTAATAGCCAAGAAAATTTAAAAAA-AAATCTAATTGCCAAAGAAATTC
130 AAAATTAAT----AAG-AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * ** * * ***
11176956 -AATAGTTAAGACTATATGAACAATTATCTATTTGAAATTGTTATGACCTTTTCTTGCATCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * * * *
11177020 AACAATTG-TTTTGTTCGTACAGGCTTATTTGGATTAAAATAATACTAATTTAATAATATT-TGA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-A
* * * * * * *
11177083 AGAATTAATAAAAGATTTAAAAAATAAATTTATTTATCGAATCAGTTT
130 AAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * * *
11177131 AAATGGTTAAGACTATTAGAATAACTATCTATTTCAAATCATTCT-AACATTTCGTTTAGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
* * * ** * * * *
11177195 AAACAATTGTTTTAGTTCATACAAGCTCATTT-AGAATAAGTTAATATTGATTTATAAACATT-T
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTCT
* * * * ** *
11177258 AAAAAATTATAAGAAAGAGATTTAAAAAAATAAAAT-TGTTTATCGAATAAGTTT
129 -AAAAA-T-TAA-TAAGAGATTT-AAAAAAT-AAATCTATTTACCAAACCAGTTC
* * * ** *
11177312 AAATAGTTATTA-TCATTTGAACAATTGTCTATTTAAAATTGTTAT-AACCTTTTGATTTGTCAT
1 AAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGTCAT
* ** * ** * *
11177375 AAAACAATTGTTTCAGTTAATACAAGCTTAGATGGAATAAAAAAAATACTAATTTATTAATATTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAAT-AAAATAATACTAATTTATTAATA-TT
* * * *** * * *
11177440 CCTAAATTAA-TAGGTAAGAAATTTAAAAAAGTAGATCTATTTATTGAATCAATTA
127 -CTAAA--AATTA-ATAAGAGATTTAAAAAA-TAAATCTATTTACCAAACCAGTTC
* * * * * *
11177495 AAATAATTATGTCCATTTGAACGATTATCTATTTCATATCATTATG-ACTTTTGTTTTATCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT-A
* * * * * * *
11177559 AAAAAATTCTTTTTGATTAATA-ATA-C-TAATTG--AT----TAATA-T--GTCA--AA-AAT-
65 AAATAATTGTTTTTG-TTCATACA-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTC
* * * ** * *
11177608 TAATAAGTAAT---AGATTTAAATAATAAATCTGCTTACCAAATCAATTC
128 TAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * *
11177655 AAATAGTTATGACTAATTGAAAAAATAT-TAATGTCAAATCATTA--AAATCTTTGTTTTGTCAT
1 AAATAGTTATGACTATTTGAACAATTATCT-ATTTCAAATCATTATGAACT-TTTGTTTTGTCAT
* * * * ** ** *
11177717 AAAAAAATTG--TTT-CTCATATAAGCTTATTAG-GTTAAAAATAATACTAATTTAAAAATATTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAAT-AAAATAATACTAATTTATTAATATTC
* * * * *** *
11177778 TGAAAATTAATAAGTAAGAGATTTAAATAATAAATGTGTTTATTGAACTAGTTC
128 T-AAAA--ATTAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
** * * * * *
11177832 AAATAGTTAAAACTATTAGAATAATTATCTATTTCAAATCTTTCT-AACCTTTTGTTTAGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGTCATA
* * * * * * * * *
11177896 AAATATTTGTTTCAT-ATCTTACAAACCTATTTGGAATAAAAT-ATTCTAAATTTATTAACATTC
65 AAATAATTGTTT-TTGTTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATTC
* * * *
11177959 AAAAAATTAAGAAGCAAAAGATTTGAAAAAATAAATCTATTTACCTAACAAGTTC
128 TAAAAATTAATAAG----AGATTT-AAAAAATAAATCTATTTACCAAACCAGTTC
* * * * ** * * **
11178014 AAATAATTATGATTATTTGAACAATTATTTATTTAAAATTGTTATTACCTTTTGTTTTAACAT-A
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* *** * *** * *
11178078 AACAATTGTTTCAATTCATAAAAGCTTATCCAAAATCAAATAATACTAATTTCTTAATATT-TCA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-A
* * * * *
11178142 AAAATTAATATGCAAGAGTTTAAAAAAATAAAT-TCGTTTACCGAA-CATATTT
130 AAAATTAATAAG--AGA-TTT-AAAAAATAAATCT-ATTTACCAAACCA-GTTC
* * * * * *
11178194 AGATAGTTATGACTATTTGAACAATTCTCTACTTAAAATTATTATG-ACATTTTGTTTTGTCACA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
* ** * * *
11178258 AAAAAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTCCA
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * * * * *** * *
11178323 AAGATTAATAAGTGATTTAAAAAATGAATCTGTATATGGAATCAATTC
130 AAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * * * * * *
11178371 AAATAATCATGGCCATTTCAACAATTATCTATTTTAAATCATTATTACCTCTTGTTTGGTCATAT
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * ** * *
11178436 TACAATTGTTTTT-TATCATATAAGCTTATTCAAAATAAAATAATACTAATATATTAATCTT-TC
66 AATAATTGTTTTTGT-TCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * * *
11178499 AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTAACTATACCAATTC
129 AAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * * *
11178552 AAATAGTAATGACTATTTGAACAACTGTATACTTCAAATCTTTAT-AACCTTTTGTTCTATCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGTCATA
* * * * * * ** * *
11178616 GAACAATTATTTCTGTTCATTCAATCTTATTCAAAATAAAATAATACTAATCTAATAATATT-TC
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCT-
* * * ** * *
11178680 AAAAATTAATAACTAAAAGATTTAAAAAATAAATTTGTTTGTCGAACCAGTTT
129 AAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * *
11178733 AAACAATTAAGACTATATGAACCATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTTATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGTCATA
* * * * *
11178797 AAACAATT-TTTTTAATTCATACTAA-CTTATTTGGAATAAAATAA-AATGAATTTATTAGTATT
65 AAATAATTGTTTTT-GTTCATAC-AAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATT
* * * * * *
11178859 -TCAAAAATTAATAAGTAAGAGATTAAAAAAATAATTCTGTTTGCCTAACCAATTC
127 CT-AAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * *
11178914 AAATAATTATGACTATTCGAACAATTATCTTTTTCAAATCATTAT-AACTTTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
* * * * * ** * *
11178978 AAA-AAATGTTTTTGTTCATATAAGTTTGTTCGAAATAAAATAATACTAACCTATTAATATTTTG
65 AAATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * ** * ** *
11179042 AAAATTAATTAGAGATTTAAAAAACAAATCGGTTTATCAAATTAATTC
130 AAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * *
11179090 AAATAGTTATGACTATCT-AAGCAATTATTTATTTCAAATC-TTTTG-GCTATTTGTTCTATTAT
1 AAATAGTTATGACTATTTGAA-CAATTATCTATTTCAAATCATTATGAACT-TTTGTTTTGTCAT
* * * * * *
11179152 AAAACAATAGTTTTTGTTCACACAAGCTTATTT-AAATTAAAATATTACTATTTTATTAATATTT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGAAA-TAAAATAATACTAATTTATTAATATTC
* * * * * * * * *
11179216 TGACAATAATAAATAAAAAAATTAAAAATTAATAT-T-TTTATCGAACTAGATC
128 T-A-AA-AATTAATAAGAGATTTAAAAAATAA-ATCTATTTACCAAACCAGTTC
* * *
11179268 AAATGGTCATGACTATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGTCAT-
* * *** ** * * * * *
11179332 AAAAAAATTATTTCAATTCATATGAGATT-TTTCAAAATAAAACAGTACT-ATGCTATTAATATT
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTT-GAAATAAAATAATACTAAT-TTATTAATATT
* * ** ** *
11179395 -TCAAAAATTAATAATTAAGAGATTTAATAAAATGAATCTCTTTACTGAATAAGTTT
127 CT-AAAAA-T--TAA-TAAGAGATTTAA-AAAATAAATCTATTTACCAAACCAGTTC
* * * * *
11179451 AAATAATTATGACTATTTGAATAATTATCTATTTGAAATCTCTATTCATTCAAGCTTATTCATAT
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAA--TC-ATT-A-TGAA-CTT-TT-GT-T
**** * * * * * * * ** *
11179516 TAAAAATAATATTAATT-TATTAATATTTAGACAA-ATAATAAGTAAAAGATTTAAAA-AATAAA
57 TTGTCATAA-AATAATTGT-TT-TTGTTCATACAAGCT--T-ATTTGAA-A--TAAAATAAT-AC
* * * * *
11179578 TATGTTTATCGAATAATTTATTAATATTCCAAAAATTAATGAGTAAGAGAATTATAAAAATTGAA
112 TA-ATTTAT-TAATA-----------TTCTAAAAATT-A--A-TAAGAG-ATT-TAAAAAATAAA
* * *
11179643 TTTGTTTACCAAACAAGTTC
158 TCTATTTACCAAACCAGTTC
* * * * * * * ***
11179663 AAACAATTATGGCTATCTGAACAATTATGTATTCCAAAAT-ATCATTTCCTTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTC-AAATCATTATGAACTTTTGTTTTGTCATA
* * * * ** *
11179727 AAACAATTGGTTCTATTCATGA-AAAATTAATTTG-AATAAAATATTA-TAAATTTATTAATATT
65 AAATAATTGTTTTTGTTCAT-ACAAGCTT-ATTTGAAATAAAATAATACT-AATTTATTAATATT
* ****
11179789 CTAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTATTTTTTGAA-CATGTTC
127 CTAAAAATTAATAAG---AGATTTAAAAAATAAATCTATTTACCAAACCA-GTTC
* * * * * *
11179843 AAATATTTTTGACTATTTGAACAATTATATATTTCAAATCACTATGACCATTT-TTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
** * * * * * *
11179907 ACCAATTGTTTCTGTTCAAACAAGCTTATTCGAAATAAAATAATATTAATTTATTAATACTCCAA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTAA
* * * *
11179972 AAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAGCAAGTTC
131 AAATTAATAAG----AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * ** * *
11180023 AAATAGTTATGACTATTTGAACAATTATGTGTTTTAAGTTGTTATGATC-TTT-TTTTGTCGTAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * * * ** * * *
11180086 AACAATTGTTTCTATTCATGCACA-TTTATTCAAAATAAACTAATACTAACTCATTAATATTCTA
66 AATAATTGTTTTTGTTCATACA-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTA
* * *
11180150 AAAATTAATAAGTTGAAGATTTAAAAAATTAATCTATTTACCAAACAAGGTC
130 AAAATTAATAA---G-AGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * * * * *
11180202 AACTAGTTCT-ATCCATTTAAACTATTATATATTTCAAATCATTATG-ACATTTTGATTTGTCGT
1 AAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCAT
* * * * ** *
11180265 AAAACAATTGTTTGTATTCATAAAAAATTATTT-AGAATAAAATAATACTAATTTATTACTA-TC
64 AAAATAATTGTTTTTGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTC
* * * * * *
11180328 TTGAAAATTATTAAGAGATTTAAAAACTAAATCTCTTTACCGAATCAGTTC
128 -TAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * ** * *
11180379 AAATAATTATGATTATTTGAACAATTATTTATCTCAAATTGTTATGATC-TTTGTTTTGTCTTAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
* * * * * ** * * * * *
11180443 AACATTTGCTTCTATTCATACAAGCTTA-TCCAGAGTAAAATATTGCTAAATTAATAATATTCTA
66 AATAATTGTTTTTGTTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTCTA
* * **
11180507 AAAATTAATAAGTAAGGATTTAAAAAACTAAATGTATTTGCTGAACCAGTTC
130 AAAATTAATAAG--A-GATTTAAAAAA-TAAATCTATTTACCAAACCAGTTC
* ** * * ** * *
11180559 AAATAGTTAAGACTATTACAACATTTATGTATTTCAAATTGTT-TTAACATTTTGTTTAGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTTTGTCATA
11180623 AAATAATTGTTT
65 AAATAATTGTTT
11180635 CATTTCATAA
Statistics
Matches: 6120, Mismatches: 1523, Indels: 951
0.71 0.18 0.11
Matches are distributed among these distances:
150 1 0.00
151 1 0.00
152 1 0.00
153 4 0.00
154 10 0.00
155 17 0.00
156 25 0.00
157 21 0.00
158 11 0.00
159 21 0.00
160 73 0.01
161 15 0.00
162 10 0.00
163 9 0.00
164 13 0.00
165 4 0.00
166 14 0.00
167 9 0.00
168 19 0.00
169 39 0.01
170 76 0.01
171 10 0.00
172 15 0.00
173 18 0.00
174 77 0.01
175 81 0.01
176 709 0.12
177 760 0.12
178 195 0.03
179 555 0.09
180 785 0.13
181 1628 0.27
182 445 0.07
183 155 0.03
184 16 0.00
185 15 0.00
186 9 0.00
187 5 0.00
188 5 0.00
189 16 0.00
190 19 0.00
191 14 0.00
192 21 0.00
193 17 0.00
194 5 0.00
195 9 0.00
196 9 0.00
197 4 0.00
198 8 0.00
199 4 0.00
200 9 0.00
201 7 0.00
202 10 0.00
203 6 0.00
204 1 0.00
205 2 0.00
206 3 0.00
207 1 0.00
208 2 0.00
209 3 0.00
210 1 0.00
211 15 0.00
212 52 0.01
213 6 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAA
AATAATTGTTTTTGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCTAA
AAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
Found at i:11174931 original size:362 final size:359
Alignment explanation
Indices: 11174228--11179490 Score: 3671
Period size: 362 Copynumber: 14.7 Consensus size: 359
11174218 AGGAATGATT
* *
11174228 AGTAAGAGA-TTTAAAAATTAAAT-TGGTTTATCGAACAAGTTAAAATAGTTATGACTATTTGAA
1 AGTAAGAGATTTTAAAAA-TAAATAT-GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAA
* * * * *
11174291 CAATTATCTATTTCAAATCACTATAACCTATTGTTTTGTCATAAAATATATTTTTTCTA-TTCAT
64 CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA-A-TTGTT-TAGTTCAT
* * * * *
11174355 ACAAGCTTATTTC-AATTAAAATAATACAAATTTATTAATATTC-AGACAACTAATAAGTAAAAG
126 ACAAGCTTA-TTCAAAATAAAATAATACTAATTTATTAATATTCTA-AAAATTAATAAGTAAGAG
* * * * * * *
11174418 ATTT-AAAAATGAATATGTTTACTGAATAAGTTTAAATAGTTAT-ATCTATTTGAATAATTATTT
189 ATTTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGA-CTATTTGAACAATTATCT
* * * * *
11174481 ATTTTAAATTGTTATGACTTTTTGTTATGTCATAAAACAATTGCTTT-TGTTCATACAAGCTTA-
253 ATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCTATTCATACAAGCTTAT
*
11174544 TTCAGATTAAAATAATATTAATTTATTAATATTTCAACAATTAATA
317 TTCA-AATAAAATAATA-TAATTTATTAATATTTCAA-AATTAATA
* * * * * *
11174590 AGTAAAAGATTTTAAAAATAAATATGTTTTCCGAACAAGTTCAAATAGTCATAACCATTTGAATA
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACA
** * * *
11174655 ATTATCTATTTCAAATTGTTATGACCTTTTGTTTCGTCATAAAACAATTGTATTAGTTCATATAG
66 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGT-TTAGTTCATACAA
* * *
11174720 GCTTATTCAAAATAAAATAATACAAATTTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAA
130 GCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAA
* * *
11174785 AATATGAATCTGTTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
195 AAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* *
11174850 ATCGTTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTACTCATACAAGCTTATTTCAAATA
260 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATA
11174915 AAATAATATAAATTTATTAATATTTCAAAAATTAATA
325 AAATAATAT-AATTTATTAATATTTC-AAAATTAATA
* * * * * *
11174952 AGTAA-AAATTTTAAGAATAAATATGTTTTCTGAACACGTTCAAATAGTTATGACTATTTAAACA
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACA
* * * *
11175016 ATTATCTATTTCAAATAATTATGA-CTTTT-TTTTATCATAAATCAATTGTTTTTGTTCATACAA
66 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTAGTTCATACAA
* * * *
11175079 GTTTATTCAAAATAAAATAATACTAATTTATTAAGATTCTAAAAATTAATAAGCAAAAGATTTAA
130 GCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAA
* * * * * * * *
11175144 AACATAAATCTATTTACCGAACGAGTCCAAATAGTTATGATTGTTTGAACAATTATTTATTTTAA
195 AAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * *
11175209 ATAGTTATGA---TTT-TTTTGTCATAAAACAATTATTTCTATTCATATAAGTTTA-TTCAAAAT
260 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-AAAT
* * *
11175269 AAAATAATATTAATCTATTAATATTCTAAAAATCAAT-
324 AAAATAATA-TAATTTATTAATATT-TCAAAATTAATA
* * * * * * * * *
11175306 AGTAGGAGATTTAAAAAATAAATTTGTTTACTGAACAAATTCAAATACTCATGTGC-ATTTGAAA
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATG-ACTATTTGAAC
* * * * **
11175370 AACTATCT-TTTCATATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATGTA
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-AGTTCATACA
** * ** * * * *
11175434 AAATTATTCAAAATAAAATAATACTGATCCATTAATATTTTGAAACTTAAGAA--AAG-GATTTA
129 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTA
* * * * *
11175496 AAAACTAAATCTGTTTA-CTAAAATAGTTCAAATAG---T---TA--TGAACAATTATTTATCTC
194 AAAAATAAATCTGTTTACCGAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* ** * * * * * * ** *
11175552 AAATTGTTATGTTCTTTTTTTTTGTCATAAAACAATTGTTTCTTTTTACACTAGTTTATTTGGAT
258 AAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAA
* * * *
11175617 TAAAATTATACCAATTTAATAATATTTCAAAATTAGTA
323 TAAAATAATA-TAATTTATTAATATTTCAAAATTAATA
* * * * * * * *
11175655 AGTAACA-AATTT-AAAA-AAATTTGTTTGCCAAACCAA-TTCAAATA-TTAGGACCATTAGAAC
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAAC
* * * * **
11175715 AATTATCTATTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAATAATTATTTTAGTTTGTACA
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATT-GTTTAGTTCATACA
* * * * * *
11175780 AGCTTATTCAAAATAAAATAATATTAATTTATTAACATTCAAAAAATTAATGAGCAAGATATTTA
129 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTT-
* * * *
11175845 AAAAAATAAATATGTTTATCAAACAAGTTCAAATAGATT-TAACTATTTGAACAATTATCTATTT
193 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAG-TTATGACTATTTGAACAATTATCTATTT
** ** *
11175909 -AAAGTCAG-TATGATATTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATA-AAATTTA-TC
257 CAAA-TC-GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTT
* *
11175969 CGAAACAAAATAATACTACTTTATTAATATTTCATAAATTAATA
319 C-AAATAAAATAATA-TAATTTATTAATATTTCA-AAATTAATA
* * ** * *
11176013 AGCAAAAGA-TTTAAAAACTAAAGCTAT-TTT-TTGAACTAGTTCAAATAGTTATAACTATTTGA
1 AGTAAGAGATTTTAAAAA-TAAA--TATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGA
* * * * ** * * * * * **
11176075 ATAAATATCAATCTCAAATTGTTATGATC-TTTATTTTCTCATAATACAATTGTTTCTGAACATA
63 ACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-AGTTCATA
* * * *
11176139 CAAGCTTATT-TAGATAAAAATAATATTAATTTAATAATATTCTAAAAA-T--TAA-TAAGAGAT
127 CAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGAT
** ** * * * * *
11176199 TTAAAAAATAAAAATGTTTGTCGAACCAGTTCAAATAGTTAAGACTA-TTAAATTAATTATATAT
191 TTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAA-CAATTATCTAT
* * * * * *
11176263 TTTAAATCGTTTTGACCTTTTGTTTAGTTATATAATAATTGTTTC-AGTTCATACAAGCTTATTT
255 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTT
** * * *
11176327 GGAATAAAATAATGCTAATTTATTAACATTTGAAAAGTTAATA
319 CAAATAAAATAAT-ATAATTTATTAATATTTCAAAA-TTAATA
* * * * *
11176370 AGCATGAGATTTGAAAAATAAATATGTTTACCTGAACAAGTTTAAACAGTTATGACTATTTGAAC
1 AGTAAGAGATTTTAAAAATAAATATGTTTACC-GAACAAGTTCAAATAGTTATGACTATTTGAAC
* * * *
11176435 AATTATCTATTTAAAATCATTATGACCATTTGTTTTGTCATCAAACAATTGTTTTCA-TTCATAA
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTT-AGTTCATAC
* * * * *
11176499 AAGCTTA-TCTAAAATAAAATAATACTACTTTATTAATATTTTGAAAATTAATAAGTAAGATACT
128 AAGCTTATTC-AAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATT
* * * * * * * *
11176563 TAAAAAATAAATCAGTTTACTGAATCAA-TTCTAATAATTATGGCCATTT-AATCAACTATCAAT
192 TAAAAAATAAATCTGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAA-CAATTATCTAT
* * * * * *
11176626 TTCAAATCATTATTACCTATTGTTTTGTCATGAAACAATTGCTTT-TCA-ACATACAAGCTTTTT
255 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCT-ATTCATACAAGCTTATT
* *
11176689 TGAAATAAAATAATACTAATTTATTAATATTTCAAGAATTAATT
318 TCAAATAAAATAATA-TAATTTATTAATATTTCAA-AATTAATA
* * * * * * * * *
11176733 AGTAAGAG-TTTTAAAAAGTAAATTTGCTTACCAAACCATTTCAAATAGTTTTAACTATTTCAAT
1 AGTAAGAGATTTTAAAAA-TAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAAC
* * * * *
11176797 AATTATCTATTTTAAATCATTATAACTTTTTATTTTGTCATCAAACAATTGGTTCTA-TTCATAC
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATT-GTT-TAGTTCATAC
* ** * * * ** * *
11176861 TATTTTATTCGAAATAAAATAATACTAATTTAATAATATTCCAAAGCTTAAT-AGCCAAGAAAAT
128 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAG-TAAG-AGAT
** * * * * * *
11176925 TTAAAAAA-AAATCTAATTGCCAAAGAAATTC-AATAGTTAAGACTATATGAACAATTATCTATT
191 TTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * *** * * * **
11176988 TGAAATTGTTATGACCTTTTCTTGCATCATAAAACAATTGTTT-TGTTCGTACAGGCTTATTTGG
256 TCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCA
* * *
11177052 ATTAAAATAATACTAATTTAATAATATTTGAAGAATTAAT-
321 AATAAAATAATA-TAATTTATTAATATTTCAA-AATTAATA
* * * * * * * * *
11177092 A--AA-AGATTTAAAAAATAAATTTATTTATCGAATC-AGTTTAAATGGTTAAGACTATTAGAAT
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAAC
* * * * * *
11177153 AACTATCTATTTCAAATCATTCTAACATTTCGTTTAGTCATAAAACAATTGTTTTAGTTCATACA
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTAGTTCATACA
* * * ** * * * * *
11177218 AGCTCATTTAGAATAAGTTAATATTGATTTATAAACATT-TAAAAAATT-ATAAGAAAGAGATTT
129 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTT
* * * * *
11177281 AAAAAAATAAAAT-TGTTTATCGAATAAGTTTAAATAGTTATTA-TCATTTGAACAATTGTCTAT
193 -AAAAAAT-AAATCTGTTTACCGAACAAGTTCAAATAGTTATGACT-ATTTGAACAATTATCTAT
* * * * * **
11177344 TTAAAATTGTTATAACCTTTTGATTTGTCATAAAACAATTGTTTC-AGTTAATACAAGCTTAGAT
255 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTT
** * *
11177408 GGAATAAAAAAAATACTAATTTATTAATATTTCCTAAATTAATA
319 CAAAT-AAAATAATA-TAATTTATTAATATTT-CAAAATTAATA
* * * * * * ** * * * *
11177452 GGTAAGAAATTTAAAAAAGTAGATCTATTTATTGAATCAA-TTAAAATAATTATGTCCATTTGAA
1 AGTAAGAGATTTTAAAAA-TAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAA
* * * *
11177516 CGATTATCTATTTCATATCATTATGA-CTTTTGTTTTATCATAAAA-AA------AATTC-T---
64 CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTAGTTCATACA
* * * *
11177569 ---TT-TT---GAT-TAATAATACTAATTGATTAATATGTC-AAAAATTAATAAGTAATAGATTT
129 AGCTTATTCAAAATAAAATAATACTAATTTATTAATAT-TCTAAAAATTAATAAGTAAGAGATTT
* * * * * * *
11177625 AAATAATAAATCTGCTTACCAAATCAA-TTCAAATAGTTATGACTAATTGAAAAAATAT-TAATG
193 AAAAAATAAATCTGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCT-ATT
* ** * * *
11177688 TCAAATCATTAAAATC-TTTGTTTTGTCATAAAAAAATTGTTTC---TCATATAAGCTTA-TT-A
256 TCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCA
** ** *
11177747 GGTTAAAAATAATACTAATTTAAAAATATTTTGAAAATTAATA
321 -AAT-AAAATAATA-TAATTTATTAATA-TTTCAAAATTAATA
* ** * ** * *
11177790 AGTAAGAGA-TTTAAATAATAAATGTGTTTATTGAACTAGTTCAAATAGTTAAAACTATTAGAAT
1 AGTAAGAGATTTTAAA-AATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAAC
* * * * * * *
11177854 AATTATCTATTTCAAATCTTTCTAACCTTTTGTTTAGTCATAAAATATTTGTTTCA-TATCTTAC
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-AGT-TCATAC
* * *** * * * * * *
11177918 AAACCTATTTGGAATAAAAT-ATTCTAAATTTATTAACATTCAAAAAATTAAGAAGCAAAAGATT
128 AAGCTTATTCAAAATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAGAGATT
* * * * *
11177982 TGAAAAAATAAATCTATTTACCTAACAAGTTCAAATAATTATGATTATTTGAACAATTATTTATT
192 T-AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * ** * * *
11178047 TAAAATTGTTATTACCTTTTGTTTTAACAT-AAACAATTGTTTCAATTCATAAAAGCTTA-TCCA
256 TCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-
* *
11178110 AAATCAAATAATACTAATTTCTTAATATTTCAAAAATTAATA
320 AAATAAAATAATA-TAATTTATTAATATTTC-AAAATTAATA
* * * * *
11178152 TGCAAGAG-TTTAAAAAAATAAAT-TCGTTTACCGAACATA-TTTAGATAGTTATGACTATTTGA
1 AGTAAGAGATTT-TAAAAATAAATAT-GTTTACCGAACA-AGTTCAAATAGTTATGACTATTTGA
* * * * * * *
11178214 ACAATTCTCTACTTAAAATTATTATGACATTTTGTTTTGTCACAAAAAAATTGTTTCAGTTCATA
63 ACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-AGTTCATA
* * * *
11178279 CAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTCCAAAGATTAATAAGT----GATT
127 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATT
* * ** * * * * *
11178340 TAAAAAATGAATCTGTATATGGAATCAA-TTCAAATAATCATGGCCATTTCAACAATTATCTATT
192 TAAAAAATAAATCTGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * * ** * *
11178404 TTAAATCATTATTACCTCTTGTTTGGTCATATTACAATTGTTT-TTTATCATATAAGCTTA-TTC
256 TCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCATACAAGCTTATTTC
* *
11178467 AAAATAAAATAATACTAATATATTAATCTTTCAAAAATTAATA
320 -AAATAAAATAATA-TAATTTATTAATATTTC-AAAATTAATA
* * * * *
11178510 AGTAAGAGATTTAAAAAATAAATTTG-TTAACTATACCAA-TTCAAATAGTAATGACTATTTGAA
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGA-A-CAAGTTCAAATAGTTATGACTATTTGAA
* * * * * * * * * * * *
11178573 CAACTGTATACTTCAAATCTTTATAACCTTTTGTTCTATCATAGAACAATTATTTCTGTTCATTC
64 CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-AGTTCATAC
* * * * *
11178638 AATCTTATTCAAAATAAAATAATACTAATCTAATAATATT-TCAAAAATTAATAACTAAAAGATT
128 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATT
* ** * * * * * * *
11178702 TAAAAAATAAATTTGTTTGTCGAACCAGTTTAAACAATTAAGACTATATGAACCATTATCTATTT
192 TAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * *
11178767 CAAATCGTTATAACCTTTTGTTTTGTTATAAAACAATT-TTTTTAATTCATACTAA-CTTATTTG
257 CAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATAC-AAGCTTATTTC
* * *
11178830 GAATAAAATAAAATGAATTTATTAGTATTTCAAAAATTAATA
320 AAATAAAATAATAT-AATTTATTAATATTTC-AAAATTAATA
** * * * * * *
11178872 AGTAAGAGATTAAAAAAATAATTCTGTTTGCCTAACCAA-TTCAAATAATTATGACTATTCGAAC
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAAC
* * * * * *
11178936 AATTATCTTTTTCAAATCATTATAACTTTTTGTTTTGTCATAAAA-AAATGTTTTTGTTCATATA
65 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTAGTTCATACA
* * * ** * *
11179000 AGTTTGTTCGAAATAAAATAATACTAACCTATTAATATTTTGAAAATTAAT---T-AGAGATTTA
129 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTA
* * * * * * *
11179061 AAAAACAAATCGGTTTATCAAATTAA-TTCAAATAGTTATGACTATCT-AAGCAATTATTTATTT
194 AAAAATAAATCTGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAA-CAATTATCTATTT
* * * * * * * * *
11179124 CAAATC-TTTTG-GCTATTTGTTCTATTATAAAACAATAGTTTTTGTTCACACAAGCTTATTT-A
257 CAAATCGTTATGACCT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCA
* * * *
11179186 AATTAAAATATTACTATTTTATTAATATTTTGACAA-TAATA
321 AA-TAAAATAATA-TAATTTATTAATA-TTTCAAAATTAATA
* * ** * * * * * * * *
11179227 AATAA-AAAAATTAAAAATTAATATTTTTATCGAACTAGATCAAATGGTCATGACTATTTGAATA
1 AGTAAGAGATTTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACA
* * * * **
11179291 ATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAAAAAATTATTTCAATTCATATG
66 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCAT-AAAACAATTGTTT-AGTTCATACA
* * * * * *
11179356 AGATTTTTCAAAATAAAACAGTACT-ATGCTATTAATATT-TCAAAAATTAATAATTAAGAGATT
129 AGCTTATTCAAAATAAAATAATACTAAT-TTATTAATATTCT-AAAAATTAATAAGTAAGAGATT
* * * * * * *
11179419 TAATAAAATGAATCTCTTTACTGAATAAGTTTAAATAATTATGACTATTTGAATAATTATCTATT
192 TAA-AAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
*
11179484 TGAAATC
256 TCAAATC
11179491 TCTATTCATT
Statistics
Matches: 3861, Mismatches: 830, Indels: 421
0.76 0.16 0.08
Matches are distributed among these distances:
336 2 0.00
337 56 0.01
338 58 0.02
339 15 0.00
342 30 0.01
343 72 0.02
344 20 0.01
345 43 0.01
346 105 0.03
347 14 0.00
348 18 0.00
349 64 0.02
350 30 0.01
351 4 0.00
352 3 0.00
353 34 0.01
354 106 0.03
355 178 0.05
356 405 0.10
357 319 0.08
358 389 0.10
359 319 0.08
360 111 0.03
361 376 0.10
362 803 0.21
363 222 0.06
364 63 0.02
365 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (359 bp):
AGTAAGAGATTTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACA
ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTAGTTCATACAAG
CTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAA
AAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
TCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAA
AATAATATAATTTATTAATATTTCAAAATTAATA
Found at i:11175037 original size:17 final size:18
Alignment explanation
Indices: 11174990--11175037 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
11174980 TCTGAACACG
*
11174990 TTCAAATAGTTATGACTAT
1 TTCAAATAATTAT-ACTAT
*
11175009 TT-AAACAATTAT-CTAT
1 TTCAAATAATTATACTAT
11175025 TTCAAATAATTAT
1 TTCAAATAATTAT
11175038 GACTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 6 0.24
17 9 0.36
18 8 0.32
19 2 0.08
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (18 bp):
TTCAAATAATTATACTAT
Found at i:11176701 original size:720 final size:705
Alignment explanation
Indices: 11174236--11179490 Score: 3091
Period size: 720 Copynumber: 7.4 Consensus size: 705
11174226 TTAGTAAGAG
* *
11174236 ATTTAAAAATTAAAT-TGGTTTATCGAACAAGTTAAAATAGTTATGACTATTTGAACAATTATCT
1 ATTTAAAAA-TAAATAT-GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
* * *
11174300 ATTTCAAATCACTATAACCTATTGTTTTGTCATAAAATATATT-TTTTCTATTCATACAAGCTTA
64 ATTTCAAATCATTATGACCT-TTGTTTTGTCATAAAACA-ATTGTTTTC-ATTCATACAAGCTTA
* * * * * *
11174364 TTTC-AATTAAAATAATACAAATTTATTAATATTCAGACAACTAATAAGTAAAAGATTT-AAAAA
126 -TTCAAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTTAAAAAA
* * * * * * *
11174427 TGAATATGTTTACTGAAT-AAGTTTAAATAGTTATATCTATTTGAATAATTATTTATTTTAAATT
190 TAAATATGTTTACTGAATCAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTTAAATC
* * * *
11174491 GTTATGACTTTTTGTTATGTCATAAAACAATTGCTTTT-GTTCATACAAGC-TTATTC-AGATTA
255 ATTATGAC-TTTTGTTTTGTCATAAAACAATTG-TTTTCATTCATACAAGCTTTATTCGA-AATA
*
11174553 AAATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTTAAAAATAAATATGTT
317 AAATAATACTAATTTATTAATATTTCAACAATTAATAAGTAAAAGA-TTTAAAAATAAATAT-TT
* *
11174618 TTCCGAACAAGTTCAAATAGTCATAACCATTTGAATAATTATCTATTTCAAATTGTTATGACCTT
380 TT-TGAACAAGTTCAAATAGTCATAA-CATTTGAATAAATATC-ATTTCAAATTGTTATGA-CTT
* * *
11174683 TTGTTTCGTCATAAAACAATTGTATT-AGTTCATATAGGCTTATTCAAAATAAAATAATACAAAT
441 TT-TTTC-TCATAAAACAATTGT-TTCTGTTCATATAAGCTTATTCAAAATAAAATAATACTAAT
* * * *
11174747 TTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAAAATATGAATCTGTTTACCGAATAAGTT
503 TTATTAATATTCTAAAAATT-A--A-TAAGAGATTTAAAAAATAAATCTGTTTA-CGAAAAAGTT
* *
11174812 CAAATAGTTATGACTATTTGAA-CAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
563 CAAATAGTTATGACTA-TTAAATTAATTAT-TATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* ** *
11174876 AAAATAATTGTTTCTACTCATACAAGCTTATTTCAAATAAAATAATATAAATTTATTAATATTTC
626 AAAATAATTGTTTC-ATTCATACAAGCTTATTTGGAATAAAATAATCT-AATTTATTAATATTTC
*
11174941 AAAAATTAATAAGTAAAA
689 -AAAATTAATAAGTAGAA
* * * * *
11174959 ATTTTAAGAATAAATATGTTTTCTGAACACGTTCAAATAGTTATGACTATTTAAACAATTATCTA
1 A-TTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTA
* * * * ** *
11175024 TTTCAAATAATTATGA-CTTTTTTTTATCATAAATCAATTGTTTTTGTTCATACAAGTTTATTCA
65 TTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTTCATTCATACAAGCTTATTCA
* * *
11175088 AAATAAAATAATACTAATTTATTAAGATTCTAAAAATTAATAAGCAAAAGATTTAAAACATAAAT
130 AAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTTAAAAAATAAAT
* * * * * * * * * *
11175153 CTATTTACCGAA-CGAGTCCAAATAGTTATGATTGTTTGAACAATTATTTATTTTAAAT-AGTTA
195 ATGTTTACTGAATCAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTTAAATCA-TTA
* * *
11175216 TGA--TTT-TTTTGTCATAAAACAATT-ATTTCTATTCATATAAG-TTTATTCAAAATAAAATAA
259 TGACTTTTGTTTTGTCATAAAACAATTGTTTTC-ATTCATACAAGCTTTATTCGAAATAAAATAA
* * * * **
11175276 TATTAATCTATTAATA-TTCTAAAAATCAAT-AGTAGGAGATTTAAAAAATAAAT-TTGTTTACT
323 TACTAATTTATTAATATTTC-AACAATTAATAAGTAAAAGATTT-AAAAATAAATATT-TTT--T
* * ** * * **
11175338 GAACAAATTCAAATACTCATGTGCATTTGAA-AAACTATCTTTTCATATCATTATGACATTTTGT
383 GAACAAGTTCAAATAGTCAT-AACATTTGAATAAA-TATCATTTCAAATTGTTATGAC--TTT-T
* * ** * **
11175402 TTTGTCATAAAACAATTGTTTCTGTTCATGTAAAATTATTCAAAATAAAATAATACTGATCCATT
443 TTTCTCATAAAACAATTGTTTCTGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATT
* * * * * * *
11175467 AATATTTTGAAACTTAAGAAAAGGATTTAAAAACTAAATCTGTTTACTAAAATAGTTCAAATAGT
508 AATATTCTAAAAATTAATAAGA-GATTTAAAAAATAAATCTGTTTACGAAAA-AGTTCAAATAGT
* * * ** * *
11175532 TATGA--A--CAATT-A-T-TTATCTCAAATTGTTATGTTCTTTTTTTTTGTCATAAAACAATTG
571 TATGACTATTAAATTAATTATTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTG
** * * * * * *
11175590 TTTC-TTTTTACACTAGTTTATTTGGATTAAAATTATACCAATTTAATAATATTTCAAAATTAGT
636 TTTCATTCATACA--AGCTTATTTGGAATAAAATAAT-CTAATTTATTAATATTTCAAAATTAAT
*
11175654 AAGTAACAA
698 AAGT-AGAA
* * * * * *
11175663 ATTT-AAAA-AAATTTGTTTGCCAAACCAA-TTCAAATA-TTAGGACCATTAGAACAATTATCTA
1 ATTTAAAAATAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTA
* * * * **
11175724 TTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAATAATTATTTT-AGTTTGTACAAGCTTATT
65 TTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTTCA-TTCATACAAGCTTATT
* * * * *
11175788 CAAAATAAAATAATATTAATTTATTAACATTCAAAAAATTAATGAGCAAGATATTTAAAAAAATA
128 CAAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTT-AAAAAATA
* *
11175853 AATATGTTTA-TCAAACAAGTTCAAATAGATT-TAACTATTTGAACAATTATCTA-TTTAAAGTC
192 AATATGTTTACTGAATCAAGTTCAAATA-ATTATAACTATTTGAACAATTATCTATTTTAAA-TC
* * * * *
11175915 AGTATGATATTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATA-AA-ATTTATCCGAAACAA
255 ATTATGA-CTTTTGTTTTGTCATAAAACAATTGTTTTCA-TTCATACAAGCTTTATTCGAAATAA
* *
11175977 AATAATACTACTTTATTAATATTTCATA-AATTAATAAGCAAAAGATTTAAAAACTAAAGCTATT
318 AATAATACTAATTTATTAATATTTCA-ACAATTAATAAGTAAAAGATTTAAAAA-TAAA--TATT
* * *
11176041 TTTTGAACTAGTTCAAATAGTTATAACTATTTGAATAAATATCAATCTCAAATTGTTATGATCTT
379 TTTTGAACAAGTTCAAATAGTCATAAC-ATTTGAATAAATATC-ATTTCAAATTGTTATGA-CTT
* ** * * * *
11176106 TATTTTCTCATAATACAATTGTTTCTGAACATACAAGCTTATT-TAGATAAAAATAATATTAATT
441 T-TTTTCTCATAAAACAATTGTTTCTGTTCATATAAGCTTATTCAAAAT-AAAATAATACTAATT
* ** * **
11176170 TAATAATATTCTAAAAATTAATAAGAGATTTAAAAAATAAAAATGTTTGTCGAACCAGTTCAAAT
504 TATTAATATTCTAAAAATTAATAAGAGATTTAAAAAATAAATCTGTTT-ACGAAAAAGTTCAAAT
* * * * * *
11176235 AGTTAAGACTATTAAATTAATTATATATTTTAAATCGTTTTGACCTTTTGTTTAGTTATATAATA
568 AGTTATGACTATTAAATTAATTAT-TATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATA
* *
11176300 ATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATGCTAATTTATTAACATTTGAAAAGT
632 ATTGTTTCA-TTCATACAAGCTTATTTGGAATAAAATAAT-CTAATTTATTAATATTTCAAAA-T
* *
11176365 TAATAAGCATGAG
694 TAATAAGTA-GAA
* *
11176378 ATTTGAAAAATAAATATGTTTACCTGAACAAGTTTAAACAGTTATGACTATTTGAACAATTATCT
1 ATTT-AAAAATAAATATGTTTACC-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
* * *
11176443 ATTTAAAATCATTATGACCATTTGTTTTGTCATCAAACAATTGTTTTCATTCATAAAAGCTTA-T
64 ATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTTCATTCATACAAGCTTATT
* *** * * * *
11176507 CTAAAATAAAATAATACTACTTTATTAATATTTTGAAAATTAATAAGTAAGATACTTAAAAAATA
128 C-AAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTTAAAAAATA
* ** * * * *
11176572 AATCA-GTTTACTGAATCAA-TTCTAATAATTATGGCCATTT-AATCAACTATCAATTTCAAATC
192 AAT-ATGTTTACTGAATCAAGTTCAAATAATTATAACTATTTGAA-CAATTATCTATTTTAAATC
* * * * *
11176634 ATTATTACCTATTGTTTTGTCATGAAACAATTGCTTTTCA-ACATACAAGCTTT-TTTGAAATAA
255 ATTATGA-CTTTTGTTTTGTCATAAAACAATTG-TTTTCATTCATACAAGCTTTATTCGAAATAA
* * * *
11176697 AATAATACTAATTTATTAATATTTCAAGAATTAATTAGTAAGAGTTTTAAAAAGTAAAT-TTGCT
318 AATAATACTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAA-TAAATATT--T
*** * * ** * * * ** *
11176761 TACCAAACCATTTCAAATAGTTTTAACTATTTCAATAATTATCTATTTTAAATCATTATAACTTT
380 T-TTGAACAAGTTCAAATAGTCATAAC-ATTTGAATAAATATC-ATTTCAAATTGTTATGAC--T
* * * * ** *
11176826 TTATTTTGTCATCAAACAATTGGTTCTATTCATACT-ATTTTATTCGAAATAAAATAATACTAAT
440 TT-TTTTCTCATAAAACAATTGTTTCTGTTCATA-TAAGCTTATTCAAAATAAAATAATACTAAT
* * ** * ** * * *
11176890 TTAATAATATTCCAAAGCTTAATAGCCAAGAAAATTTAAAAAA-AAATCTAATTGCCAAAGAAAT
503 TTATTAATATTCTAAAAATTAAT----AAG-AGATTTAAAAAATAAATCTGTTTACGAAA-AAGT
* * * * * * ***
11176954 TC-AATAGTTAAGACTATATGAA-CAATTATCTATTTGAAATTGTTATGACCTTTTCTTGCATCA
562 TCAAATAGTTATGACTAT-TAAATTAATTAT-TATTTCAAATCGTTATGACCTTTTGTTTTGTCA
* ** * * * * *
11177017 TAAAACAATTGTTTTGTTCGTACAGGCTTATTTGGATTAAAATAATACTAATTTAATAATATTTG
625 TAAAATAATTGTTTCATTCATACAAGCTTATTTGGAATAAAATAAT-CTAATTTATTAATATTTC
*
11177082 AAGAATTAATAA--A-AG
689 AA-AATTAATAAGTAGAA
* * * * * * * * *
11177097 ATTTAAAAAATAAATTTATTTATCGAATC-AGTTTAAATGGTTAAGACTATTAGAATAACTATCT
1 ATTT-AAAAATAAATATGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
* * * * *
11177161 ATTTCAAATCATTCTAACATTTCGTTTAGTCATAAAACAATTGTTTT-AGTTCATACAAGCTCAT
64 ATTTCAAATCATTATGACCTTT-GTTTTGTCATAAAACAATTGTTTTCA-TTCATACAAGCTTAT
* * ** * * * * *
11177225 TTAGAATAAGTTAATATTGATTTATAAACATTTAAAAAATT-ATAAG-AAAGAGATTTAAAAAAA
127 TCAAAATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAA-AGATTT-AAAAAA
* * * * *
11177288 TAAA-ATTGTTTA-TCGAAT-AAGTTTAAATAGTTATTA-TCATTTGAACAATTGTCTATTTAAA
190 TAAATA-TGTTTACT-GAATCAAGTTCAAATAATTATAACT-ATTTGAACAATTATCTATTTTAA
** * * * * *
11177349 ATTGTTATAACCTTTTGATTTGTCATAAAACAATTG-TTTCAGTTAATACAAGC-TTAGAT-GGA
252 ATCATTATGA-CTTTTGTTTTGTCATAAAACAATTGTTTTCA-TTCATACAAGCTTTA-TTCGAA
* * *
11177411 ATAAAAAAAATACTAATTTATTAATATTTCCTA-AATTAATAGGTAAGAA-ATTTAAAAAAGTAG
314 AT-AAAATAATACTAATTTATTAATATTT-CAACAATTAATAAGTAA-AAGATTT-AAAAA-TA-
* * * * * ** ** * * **
11177474 ATCTATTTATTGAATCAA-TTAAAATAATTATGTCCATTTGAACGATTATCTATTTCATATCATT
373 A-ATATTTTTTGAA-CAAGTTCAAATAGTCAT-AACATTTGAATAAATATC-ATTTCAAATTGTT
* **
11177538 ATGACTTTTGTTTTATCATAAAA-AA--AATTCT-TT--T-T--G---A-T-----T--AATAAT
434 ATGAC-TTT-TTTTCTCATAAAACAATTGTTTCTGTTCATATAAGCTTATTCAAAATAAAATAAT
* * * *
11177583 ACTAATTGATTAATATGTC-AAAAATTAATAAGTAATAGATTTAAATAATAAATCTGCTTACCAA
497 ACTAATTTATTAATAT-TCTAAAAATTAATAAG----AGATTTAAAAAATAAATCTGTTTACGAA
* * * ** *
11177647 ATCAA-TTCAAATAGTTATGACTAATTGAAA--AAATATTAATGTCAAATCATTAAAATC-TTTG
557 A--AAGTTCAAATAGTTATGACT-ATT-AAATTAATTATT-ATTTCAAATCGTTATGACCTTTTG
* * * * *
11177708 TTTTGTCATAAAAAAATTGTTTC--TCATATAAGCTTATTAGG-TTAAAAATAATACTAATTTAA
617 TTTTGTCATAAAATAATTGTTTCATTCATACAAGCTTATTTGGAAT-AAAATAAT-CTAATTTAT
* * *
11177770 AAATATTTTGAAAATTAATAAGTAAGAG
680 TAATA-TTTCAAAATTAATAAGT-AGAA
* ** * ** * *
11177798 ATTTAAATAATAAATGTGTTTATTGAACTAGTTCAAATAGTTAAAACTATTAGAATAATTATCTA
1 ATTTAAA-AATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTA
* * * * * * * * *
11177863 TTTCAAATCTTTCTAACCTTTTGTTTAGTCATAAAATATTTG-TTTCATATCTTACAAACCTATT
65 TTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTTCAT-TCATACAAGCTTATT
*** * * *
11177927 TGGAATAAAAT-ATTCTAAATTTATTAACATTCAAAAAATTAAGAAGCAAAAGATTTGAAAAAAT
128 CAAAATAAAATAATACT-AATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTT-AAAAAAT
* * * * * * *
11177991 AAATCTATTTACCT-AA-CAAGTTCAAATAATTATGATTATTTGAACAATTATTTATTTAAAATT
191 AAATATGTTTA-CTGAATCAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTTAAATC
* * ** * * * *
11178054 GTTATTACCTTTTGTTTTAACAT-AAACAATTG-TTTCAATTCATAAAAGC-TTATCCAAAATCA
255 ATTATGA-CTTTTGTTTTGTCATAAAACAATTGTTTTC-ATTCATACAAGCTTTATTCGAAATAA
* * * * *
11178116 AATAATACTAATTTCTTAATATTTCAAAAATTAATATGCAAGAG-TTTAAAAAAATAAAT-TCGT
318 AATAATACTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTT--AAAAATAAATAT--T
** * * * * * * * * * *
11178179 TTACCGAACATA-TTTAGATAGTTATGACTATTTGAACAATTCTCTACTTAAAATTATTATGACA
379 TT-TTGAACA-AGTTCAAATAGTCATAAC-ATTTGAATAAATATC-ATTTCAAATTGTTATGAC-
* * * * * * *
11178243 TTTTGTTTTGTCACAAAAAAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATATTAA
439 -TTT-TTTTCTCATAAAACAATTGTTTCTGTTCATATAAGCTTATTCAAAATAAAATAATACTAA
* * * * * * *
11178308 TTTATTAATATTCCAAAGATTAATAAGTGATTTAAAAAATGAATCTGTATATGGAATCAA-TTCA
502 TTTATTAATATTCTAAAAATTAATAAGAGATTTAAAAAATAAATCTGTTTA-CGAA-AAAGTTCA
* * * * * * * * * * * *
11178372 AATAATCATGGCCATTTCAA-CAATTATCTATTTTAAATCATTATTACCTCTTGTTTGGTCATAT
565 AATAGTTATGACTA-TTAAATTAATTAT-TATTTCAAATCGTTATGACCTTTTGTTTTGTCATAA
* * ** * *** * *
11178436 TACAATTGTTTTTTATCATATAAGCTTATTCAAAATAAAATAATACTAATATATTAATCTTTCAA
628 AATAATTGTTTCAT-TCATACAAGCTTATTTGGAATAAAATAAT-CTAATTTATTAATATTTC-A
*
11178501 AAATTAATAAGTAAGAG
690 AAATTAATAAGT-AGAA
* * * * * * *
11178518 ATTTAAAAAATAAATTTG-TTAACTATACCAA-TTCAAATAGTAATGACTATTTGAACAACTGTA
1 ATTT-AAAAATAAATATGTTTACCGA-A-CAAGTTCAAATAGTTATGACTATTTGAACAATTATC
* * * * * * * * * *
11178581 TACTTCAAATCTTTATAACCTTTTGTTCTATCATAGAACAATT-ATTTCTGTTCATTCAATCTTA
63 TATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTTC-ATTCATACAAGCTTA
* *
11178645 TTCAAAATAAAATAATACTAATCTAATAATATTTC-AAAAATTAATAA-CTAAAAGATTTAAAAA
126 TTCAAAATAAAATAATACTAATTTATTAATA-TTCAAAAAATTAATAAGC-AAAAGATTTAAAAA
* * * * * * * *
11178708 ATAAATTTGTTT-GTCGAA-CCAGTTTAAACAATTA-AGACTATATGAACCATTATCTATTTCAA
189 ATAAATATGTTTACT-GAATCAAGTTCAAATAATTATA-ACTATTTGAACAATTATCTATTTTAA
* * * * * * *
11178770 ATCGTTATAACCTTTTGTTTTGTTATAAAACAATTTTTTTAATTCATACTAA-C-TTATTTGGAA
252 ATCATTATGA-CTTTTGTTTTGTCATAAAACAATTGTTTTCATTCATAC-AAGCTTTATTCGAAA
* * * *
11178833 TAAAATAA-AATGAATTTATTAGTATTTCAAAAATTAATAAGTAAGAGA-TT-AAAA-AAATAAT
315 TAAAATAATACT-AATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAATAAAT-AT
* * * * * * * **
11178894 TCTGTTTGCCTAACCAA-TTCAAATAATTATGACTATTCGAACAATTATCTTTTTCAAATCATTA
378 T-T-TTTG---AA-CAAGTTCAAATAGTCATAAC-ATTTGAATAAATATC-ATTTCAAATTGTTA
* * * * * * *
11178958 TAACTTTTTGTTTTGTCATAAAA-AAATGTTTTTGTTCATATAAGTTTGTTCGAAATAAAATAAT
435 TGAC--TTT-TTTTCTCATAAAACAATTGTTTCTGTTCATATAAGCTTATTCAAAATAAAATAAT
** * * * * *
11179022 ACTAACCTATTAATATTTTGAAAATTAATTAGAGATTTAAAAAACAAATCGGTTTATC-AAATTA
497 ACTAATTTATTAATATTCTAAAAATTAATAAGAGATTTAAAAAATAAATCTGTTTA-CGAAA--A
** * * *
11179086 A-TTCAAATAGTTATGACTATCT-AAGCAATTATTTATTTCAAATC-TTTTG-GCTATTTGTTCT
559 AGTTCAAATAGTTATGACTAT-TAAATTAATTA-TTATTTCAAATCGTTATGACCT-TTTGTTTT
* * * * ** * * * *
11179147 ATTATAAAACAATAGTTTTTGTTCACACAAGCTTATTT-AAATTAAAATATTACTATTTTATTAA
621 GTCATAAAATAATTG-TTTCATTCATACAAGCTTATTTGGAA-TAAAATAAT-CTAATTTATTAA
* * * *
11179211 TATTTTGACAA-TAATAAATAAAAA
683 TA-TTTCAAAATTAATAAGT-AGAA
* * * * * * * * *
11179235 AATTAAAAATTAATATTTTTATCGAACTAGATCAAATGGTCATGACTATTTGAATAATTATCTAT
1 ATTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * * ** * *
11179300 TTCAAATCATTATAACCTTTTGTTTTGTCATAAAAAAAATT-ATTTCAATTCATATGAGATTTTT
66 TTCAAATCATTATGACC-TTTGTTTTGTCAT-AAAACAATTGTTTTC-ATTCATACAAGCTTATT
* * * ** *
11179364 CAAAATAAAACAGTACT-ATGCTATTAATATTTC-AAAAATTAATAATTAAGAGATTTAATAAAA
128 CAAAATAAAATAATACTAAT-TTATTAATA-TTCAAAAAATTAATAAGCAAAAGATTTAA-AAAA
* * * * * * *
11179427 TGAATCTCTTTACTGAAT-AAGTTTAAATAATTATGACTATTTGAATAATTATCTATTTGAAATC
190 TAAATATGTTTACTGAATCAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTTAAATC
11179491 TCTATTCATT
Statistics
Matches: 3567, Mismatches: 724, Indels: 487
0.75 0.15 0.10
Matches are distributed among these distances:
695 3 0.00
696 3 0.00
697 46 0.01
698 22 0.01
699 116 0.03
700 137 0.04
701 184 0.05
702 191 0.05
703 71 0.02
704 84 0.02
705 1 0.00
706 89 0.02
707 147 0.04
708 16 0.00
709 6 0.00
710 7 0.00
711 9 0.00
712 40 0.01
713 3 0.00
714 80 0.02
715 104 0.03
716 203 0.06
717 214 0.06
718 338 0.09
719 373 0.10
720 680 0.19
721 181 0.05
722 6 0.00
723 115 0.03
724 71 0.02
725 16 0.00
726 11 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (705 bp):
ATTTAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
TTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTTCATTCATACAAGCTTATTCAA
AATAAAATAATACTAATTTATTAATATTCAAAAAATTAATAAGCAAAAGATTTAAAAAATAAATA
TGTTTACTGAATCAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTTAAATCATTATG
ACTTTTGTTTTGTCATAAAACAATTGTTTTCATTCATACAAGCTTTATTCGAAATAAAATAATAC
TAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAATAAATATTTTTTGAACAAGT
TCAAATAGTCATAACATTTGAATAAATATCATTTCAAATTGTTATGACTTTTTTTCTCATAAAAC
AATTGTTTCTGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAA
TTAATAAGAGATTTAAAAAATAAATCTGTTTACGAAAAAGTTCAAATAGTTATGACTATTAAATT
AATTATTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCATTCATACAAG
CTTATTTGGAATAAAATAATCTAATTTATTAATATTTCAAAATTAATAAGTAGAA
Found at i:11178623 original size:539 final size:537
Alignment explanation
Indices: 11177930--11179071 Score: 1190
Period size: 539 Copynumber: 2.1 Consensus size: 537
11177920 ACCTATTTGG
* * * * * *
11177930 AATAAAAT-ATTCTAAATTTATTAA-CATTCAAAAAATTAAGAAGCAAAAGATTTGAAAAAATAA
1 AATAAAATAATACT-AATATATTAATCTTTC-AAAAATTAATAAGTAAGAGATTT-AAAAAATAA
* * * * * *
11177993 ATCTATTTACCTAACAAGTTCAAATAATTATGATTATTTGAACAATTATTTATTTAAAATTGTTA
63 ATCTATTTAACTAACAAGTTCAAATAATAATGACTATTTGAACAACTATATACTTAAAATTGTTA
* * * *
11178058 TTACCTTTTGTTTTAACATAAACAATTGTTTCAATTCATAAAAGCTTATCCAAAATCAAATAATA
128 TAACCTTTTGTTCTAACATAAACAATTATTTCAATTCATAAAAGCTTATCCAAAATAAAATAATA
* ** **
11178123 CTAATTTCTTAATATTTCAAAAATTAAT-A-TGCAAGAGTTTAAAAAAATAAATTCGTTTACCGA
193 CTAATCTAATAATATTTCAAAAATTAATAACTAAAAGA-TTT-AAAAAATAAATTCGTTTACCGA
* * * * * * * *
11178186 A-CATATTTAGATAGTTATGACTATTTGAACAATTCTCTACTTAAAATTATTATGACATTTTGTT
256 ACCA-ATTTAAACAATTAAGACTATATGAACAATTATCTACTTAAAATCATTATAACATTTTGTT
* * *
11178250 TTGTCACAAAAAAATTGTTTCAGTTCATAC-AAGCTTATTCGAAATAAAATAATATTAATTTATT
320 TTGTCACAAAAAAATTGTTTCAATTCATACTAA-CTTATTCGAAATAAAATAAAATGAATTTATT
* * *
11178314 AATATTCCAAAGATTAATAAGT-GATTTAAAAAATGAA-TCTGTATATG-GAATCAATTCAAATA
384 AATATTCCAAAAATTAATAAGTAGATTAAAAAAAT-AATTCTGT-T-TGCGAACCAATTCAAATA
* * * *
11178376 ATCATGGCCATTTC-AACAATTATCTATTTT-AAATCATTATTACCTCTTGTTTGGTCATATTAC
446 ATCATGACCA-TTCGAACAATTATCT-TTTTCAAATCATTATAACCTCTTGTTTGGTCATA-AAA
*
11178439 AATTGTTTTT-TATCATATAAGCTTATTCAA
508 AAATGTTTTTGT-TCATATAAGCTTATTCAA
11178469 AATAAAATAATACTAATATATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-
1 AATAAAATAATACTAATATATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
* * *
11178533 T-TGTTAACTATACCAA-TTCAAATAGTAATGACTATTTGAACAACTGTATACTTCAAATCT-TT
66 TAT-TTAACTA-A-CAAGTTCAAATAATAATGACTATTTGAACAACTATATACTTAAAAT-TGTT
* ** ** * *
11178595 ATAACCTTTTGTTCTATCATAGAACAATTATTTCTGTTCATTCAATCTTATTCAAAATAAAATAA
127 ATAACCTTTTGTTCTAACATA-AACAATTATTTCAATTCATAAAAGCTTATCCAAAATAAAATAA
* **
11178660 TACTAATCTAATAATATTTCAAAAATTAATAACTAAAAGATTTAAAAAATAAATTTGTTTGTCGA
191 TACTAATCTAATAATATTTCAAAAATTAATAACTAAAAGATTTAAAAAATAAATTCGTTTACCGA
* * * * * *
11178725 ACCAGTTTAAACAATTAAGACTATATGAACCATTATCTATTTCAAATCGTTATAACCTTTTGTTT
256 ACCAATTTAAACAATTAAGACTATATGAACAATTATCTACTTAAAATCATTATAACATTTTGTTT
* * * * * * * *
11178790 TGTTATAAAACAATTTTTTTAATTCATACTAACTTATTTGGAATAAAATAAAATGAATTTATTAG
321 TGTCACAAAAAAATTGTTTCAATTCATACTAACTTATTCGAAATAAAATAAAATGAATTTATTAA
* *
11178855 TATTTCAAAAATTAATAAGTAAGAGATTAAAAAAATAATTCTGTTTGCCTAACCAATTCAAATAA
386 TATTCCAAAAATTAATAAGT---AGATTAAAAAAATAATTCTGTTTG-CGAACCAATTCAAATAA
* * * * *
11178920 TTATGACTATTCGAACAATTATCTTTTTCAAATCATTATAACTTTTTGTTTTGTCATAAAAAAAT
447 TCATGACCATTCGAACAATTATCTTTTTCAAATCATTATAACCTCTTGTTTGGTCATAAAAAAAT
* * *
11178985 GTTTTTGTTCATATAAGTTTGTTCGA
512 GTTTTTGTTCATATAAGCTTATTCAA
** * ** *
11179011 AATAAAATAATACTAACCTATTAATATTTTGAAAATTAAT---T-AGAGATTTAAAAAACAAATC
1 AATAAAATAATACTAATATATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
11179072 GGTTTATCAA
Statistics
Matches: 498, Mismatches: 83, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
536 1 0.00
537 7 0.01
538 84 0.17
539 240 0.48
540 16 0.03
541 7 0.01
542 70 0.14
543 73 0.15
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (537 bp):
AATAAAATAATACTAATATATTAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATC
TATTTAACTAACAAGTTCAAATAATAATGACTATTTGAACAACTATATACTTAAAATTGTTATAA
CCTTTTGTTCTAACATAAACAATTATTTCAATTCATAAAAGCTTATCCAAAATAAAATAATACTA
ATCTAATAATATTTCAAAAATTAATAACTAAAAGATTTAAAAAATAAATTCGTTTACCGAACCAA
TTTAAACAATTAAGACTATATGAACAATTATCTACTTAAAATCATTATAACATTTTGTTTTGTCA
CAAAAAAATTGTTTCAATTCATACTAACTTATTCGAAATAAAATAAAATGAATTTATTAATATTC
CAAAAATTAATAAGTAGATTAAAAAAATAATTCTGTTTGCGAACCAATTCAAATAATCATGACCA
TTCGAACAATTATCTTTTTCAAATCATTATAACCTCTTGTTTGGTCATAAAAAAATGTTTTTGTT
CATATAAGCTTATTCAA
Done.