Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11202444
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 44000 characters in sequence are not A, C, G, or T
File 9 of 64
Found at i:722487 original size:10 final size:10
Alignment explanation
Indices: 722460--722511 Score: 65
Period size: 9 Copynumber: 5.4 Consensus size: 10
722450 CTTAATCTTT
722460 TTTTAATATA
1 TTTTAATATA
722470 TATTTAATATA
1 T-TTTAATATA
*
722481 TTTTAATGT-
1 TTTTAATATA
722490 TTTTAATAT-
1 TTTTAATATA
722499 TTTTAA-ATA
1 TTTTAATATA
722508 TTTT
1 TTTT
722512 TTGTTTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 2 0.05
9 18 0.47
10 8 0.21
11 10 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTTAATATA
Found at i:722511 original size:19 final size:19
Alignment explanation
Indices: 722459--722512 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
722449 TCTTAATCTT
*
722459 TTTTTAATATATATTTAATA
1 TTTTTAA-ATATTTTTAATA
*
722479 TATTTT-AATGTTTTTAATA
1 T-TTTTAAATATTTTTAATA
722498 TTTTTAAATATTTTT
1 TTTTTAAATATTTTT
722513 TGTTTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 4 0.14
19 19 0.66
20 2 0.07
21 4 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTTAAATATTTTTAATA
Found at i:722520 original size:16 final size:16
Alignment explanation
Indices: 722499--722529 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
722489 TTTTTAATAT
722499 TTTTAAATATTTTTTG
1 TTTTAAATATTTTTTG
*
722515 TTTTAATTATTTTTT
1 TTTTAAATATTTTTT
722530 TAATGGACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTAAATATTTTTTG
Found at i:722525 original size:26 final size:29
Alignment explanation
Indices: 722459--722528 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 29
722449 TCTTAATCTT
*
722459 TTTTTAATATATATTTAATATATTTTAATG
1 TTTTTAAT-TATTTTTAATATATTTTAATG
*
722489 TTTTTAA-TATTTTTAA-ATATTTT-TTG
1 TTTTTAATTATTTTTAATATATTTTAATG
722515 -TTTTAATTATTTTT
1 TTTTTAATTATTTTT
722529 TTAATGGACA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 6 0.16
26 9 0.24
27 7 0.19
28 8 0.22
30 7 0.19
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (29 bp):
TTTTTAATTATTTTTAATATATTTTAATG
Found at i:722528 original size:10 final size:9
Alignment explanation
Indices: 722459--722512 Score: 63
Period size: 10 Copynumber: 5.6 Consensus size: 9
722449 TCTTAATCTT
722459 TTTTTAATA
1 TTTTTAATA
722468 TATATTTAATA
1 T-T-TTTAATA
*
722479 TATTTTAATG
1 T-TTTTAATA
722489 TTTTTAATA
1 TTTTTAATA
722498 TTTTTAAATA
1 TTTTT-AATA
722508 TTTTT
1 TTTTT
722513 TGTTTTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
9 13 0.32
10 17 0.43
11 10 0.25
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTAATA
Found at i:722904 original size:7 final size:7
Alignment explanation
Indices: 722886--722935 Score: 70
Period size: 7 Copynumber: 7.4 Consensus size: 7
722876 TTCTTTTATG
722886 TTTCATTT
1 TTTCA-TT
722894 TTTCATT
1 TTTCATT
722901 TTTCATT
1 TTTCATT
722908 TTTCA-T
1 TTTCATT
722914 TTT--TT
1 TTTCATT
722919 TTTCATT
1 TTTCATT
722926 TTTCATT
1 TTTCATT
722933 TTT
1 TTT
722936 TTCATTCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.10
6 4 0.10
7 26 0.67
8 5 0.13
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTCATT
Found at i:722922 original size:18 final size:18
Alignment explanation
Indices: 722899--722937 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
722889 CATTTTTTCA
722899 TTTTTCATTTTTCATTTT
1 TTTTTCATTTTTCATTTT
722917 TTTTTCATTTTTCATTTT
1 TTTTTCATTTTTCATTTT
722935 TTT
1 TTT
722938 CATTCTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCATTTTTCATTTT
Found at i:722946 original size:25 final size:22
Alignment explanation
Indices: 722886--722941 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 22
722876 TTCTTTTATG
722886 TTTCATTTTTTCATTTTTCATT
1 TTTCATTTTTTCATTTTTCATT
722908 TTTCA--TTTT--TTTTTCATT
1 TTTCATTTTTTCATTTTTCATT
722926 TTTCATTTTTTTCATT
1 TTTCA-TTTTTTCATT
722942 CTTTTGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
18 14 0.48
20 4 0.14
21 4 0.14
22 5 0.17
23 2 0.07
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTCATTTTTTCATTTTTCATT
Found at i:722952 original size:25 final size:24
Alignment explanation
Indices: 722865--722953 Score: 65
Period size: 26 Copynumber: 3.5 Consensus size: 24
722855 CTAAGAAGAG
* *
722865 TTTTTTGTGTTTTCTTTTATGTTTCA
1 TTTTTTGTTTTTTCATTT-T-TTTCA
**
722891 TTTTTTCATTTTTCA--TTTTTCA
1 TTTTTTGTTTTTTCATTTTTTTCA
*
722913 TTTTTTTTTCATTTTTCATTTTTTTCA
1 -TTTTTTGT--TTTTTCATTTTTTTCA
722940 TTCTTTTGTTTTTT
1 TT-TTTTGTTTTTT
722954 TGTTATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
22 5 0.10
23 7 0.14
24 1 0.02
25 12 0.24
26 13 0.26
27 12 0.24
ACGTcount: A:0.09, C:0.10, G:0.04, T:0.76
Consensus pattern (24 bp):
TTTTTTGTTTTTTCATTTTTTTCA
Found at i:722983 original size:20 final size:20
Alignment explanation
Indices: 722945--722983 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
722935 TTTCATTCTT
* *
722945 TTGTTTTTTTGTTATTTTTG
1 TTGTTTTCTTGTTACTTTTG
*
722965 TTGTTTTCTTGTTGCTTTT
1 TTGTTTTCTTGTTACTTTT
722984 TTTTCTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.03, C:0.05, G:0.15, T:0.77
Consensus pattern (20 bp):
TTGTTTTCTTGTTACTTTTG
Found at i:723503 original size:31 final size:31
Alignment explanation
Indices: 723376--723503 Score: 82
Period size: 31 Copynumber: 4.1 Consensus size: 31
723366 CTAAGCTGCT
* *
723376 AGTCAAATGAA-GTGACCAAGACTGAACCACA
1 AGTCAAAT-AAGGTGACCAGGATTGAACCACA
* *
723407 AGTCAAATAAAGTGA-CAGGGATTGAACCATA
1 AGTCAAATAAGGTGACCA-GGATTGAACCACA
* * * *** * * **
723438 AGTTAAGTGAGGTG-GTTGAAATTGAATCGTA
1 AGTCAAATAAGGTGACCAG-GATTGAACCACA
723469 AGTCAAATAAGGTGACCAGGATTGAACCACA
1 AGTCAAATAAGGTGACCAGGATTGAACCACA
723500 AGTC
1 AGTC
723504 GAGTGAAGTA
Statistics
Matches: 70, Mismatches: 22, Indels: 10
0.69 0.22 0.10
Matches are distributed among these distances:
30 5 0.07
31 64 0.91
32 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (31 bp):
AGTCAAATAAGGTGACCAGGATTGAACCACA
Found at i:723731 original size:33 final size:31
Alignment explanation
Indices: 723661--723737 Score: 86
Period size: 33 Copynumber: 2.5 Consensus size: 31
723651 TTAGCCATCC
723661 AAACTAGGC-TAAATCACATAAGTTCTAGAT
1 AAACTAGGCTTAAATCACATAAGTTCTAGAT
* * *
723691 AATCTAGGCTTAAATTCTTCAT-AGTTGCTAGGT
1 AAACTAGGCTTAAA-TC-ACATAAGTT-CTAGAT
723724 AAACTAGGCTTAAA
1 AAACTAGGCTTAAA
723738 ATCTATTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 8 0.21
31 4 0.10
32 6 0.15
33 21 0.54
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (31 bp):
AAACTAGGCTTAAATCACATAAGTTCTAGAT
Found at i:723783 original size:32 final size:32
Alignment explanation
Indices: 723747--723812 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
723737 AATCTATTTG
*
723747 GTGCCAAATAAA-TTGGATTTAAAATTTCATAA
1 GTGCCAAATAAACTAGG-TTTAAAATTTCATAA
* * *
723779 GTGCCAACTAAACTAGGTTTAAATTTTTATAA
1 GTGCCAAATAAACTAGGTTTAAAATTTCATAA
723811 GT
1 GT
723813 ACTAGCTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 26 0.90
33 3 0.10
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (32 bp):
GTGCCAAATAAACTAGGTTTAAAATTTCATAA
Found at i:724147 original size:92 final size:93
Alignment explanation
Indices: 724048--724220 Score: 215
Period size: 92 Copynumber: 1.8 Consensus size: 93
724038 CCAACTAAAT
* * * *
724048 TGGGCTTAAATTTTCATAAATGCCAACTAAACG-GAGCTTAAA-ACCTGGGTGGCAACTAGACTG
1 TGGGCTTAAATTTTCATAAATACCAACTAAACGAG-GCTTAAATACATGGGTGGCAACTAAACTA
724111 GGCTTAAATTTTCATAAATGCAGCTAATA
65 GGCTTAAATTTTCATAAATGCAGCTAATA
* * * * * *
724140 TGGGCTTAAATTTTTATGAATACCAGCTAAACTAGGCTTAAATTTTCATGGGTGTCAACTAAACT
1 TGGGCTTAAATTTTCATAAATACCAACTAAACGAGGCTTAAA--TACATGGGTGGCAACTAAACT
724205 AGGCTTAAATTTTCAT
64 AGGCTTAAATTTTCAT
724221 TAGTGCCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
92 35 0.52
93 1 0.01
95 31 0.46
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (93 bp):
TGGGCTTAAATTTTCATAAATACCAACTAAACGAGGCTTAAATACATGGGTGGCAACTAAACTAG
GCTTAAATTTTCATAAATGCAGCTAATA
Found at i:724239 original size:32 final size:32
Alignment explanation
Indices: 724019--724244 Score: 167
Period size: 32 Copynumber: 7.2 Consensus size: 32
724009 AAAAAATTGA
** * *
724019 GCTTAAATTTTCATGGGTGCCAACTAAATTGG
1 GCTTAAATTTTCATGAATGCCAACTAAACTAG
* *
724051 GCTTAAATTTTCATAAATGCCAACTAAAC-GG
1 GCTTAAATTTTCATGAATGCCAACTAAACTAG
* * ** * * *
724082 AGCTTAAA---ACCTGGGTGGCAACTAGACTGG
1 -GCTTAAATTTTCATGAATGCCAACTAAACTAG
* * *
724112 GCTTAAATTTTCATAAATG-CAGCTAATA-TGG
1 GCTTAAATTTTCATGAATGCCAACTAA-ACTAG
* * *
724143 GCTTAAATTTTTATGAATACCAGCTAAACTAG
1 GCTTAAATTTTCATGAATGCCAACTAAACTAG
** *
724175 GCTTAAATTTTCATGGGTGTCAACTAAACTAG
1 GCTTAAATTTTCATGAATGCCAACTAAACTAG
* * *
724207 GCTTAAATTTTCATTAGTGCCAACTAATCTAG
1 GCTTAAATTTTCATGAATGCCAACTAAACTAG
724239 GCTTAA
1 GCTTAA
724245 TCTTTTCTAA
Statistics
Matches: 154, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
29 19 0.12
30 2 0.01
31 27 0.18
32 106 0.69
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (32 bp):
GCTTAAATTTTCATGAATGCCAACTAAACTAG
Found at i:725126 original size:27 final size:27
Alignment explanation
Indices: 725096--725178 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
725086 CATTTCTTTT
*
725096 TTTTTCTTTTTTTTTTCTTTCCTTCAC
1 TTTTCCTTTTTTTTTTCTTTCCTTCAC
**
725123 TTTTCCTTTTTTCTTTT-TTTGTTTTC-C
1 TTTTCCTTTTTT-TTTTCTTT-CCTTCAC
** *
725150 TTAACCTTTTTTTTTTCATTCCTTCAC
1 TTTTCCTTTTTTTTTTCTTTCCTTCAC
725177 TT
1 TT
725179 CTTGTTTTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
26 7 0.16
27 30 0.68
28 7 0.16
ACGTcount: A:0.06, C:0.22, G:0.01, T:0.71
Consensus pattern (27 bp):
TTTTCCTTTTTTTTTTCTTTCCTTCAC
Found at i:725165 original size:32 final size:33
Alignment explanation
Indices: 725092--725166 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 33
725082 CAATCATTTC
* *
725092 TTTTTTTTTCTTTTTTTTTTCTTTCCTTCACTT
1 TTTTTTTTTCTTTTTTTTGTCTTTCCTTAACTT
* *
725125 TTCCTTTTTTC-TTTTTTTGT-TTTCCTTAACCT
1 TT-TTTTTTTCTTTTTTTTGTCTTTCCTTAACTT
725157 TTTTTTTTTC
1 TTTTTTTTTC
725167 ATTCCTTCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 7 0.19
32 12 0.33
33 10 0.28
34 7 0.19
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (33 bp):
TTTTTTTTTCTTTTTTTTGTCTTTCCTTAACTT
Found at i:725698 original size:21 final size:21
Alignment explanation
Indices: 725671--725722 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
725661 TCATAACAAA
* *
725671 TTTTTTTTTCCTTTCTCTTTCC
1 TTTTTTTTACTTTTCT-TTTCC
725693 TTTTTTTTACTTTTCTTTTCC
1 TTTTTTTTACTTTTCTTTTCC
725714 TTTCTTTTT
1 TTT-TTTTT
725723 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTTTACTTTTCTTTTCC
Found at i:725722 original size:11 final size:10
Alignment explanation
Indices: 725672--725722 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
725662 CATAACAAAT
725672 TTTTTTTTCC
1 TTTTTTTTCC
*
725682 TTTCTCTTTCC
1 TTT-TTTTTCC
*
725693 TTTTTTTTAC
1 TTTTTTTTCC
725703 TTTTCTTTTCC
1 TTTT-TTTTCC
725714 TTTCTTTTT
1 TTT-TTTTT
725723 TTATTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 12 0.35
11 21 0.62
12 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTTCC
Found at i:725732 original size:11 final size:11
Alignment explanation
Indices: 725693--725744 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
725683 TTCTCTTTCC
725693 TTTTTTTTACTT
1 TTTTTTTTA-TT
* **
725705 TTCTTTTCCTT
1 TTTTTTTTATT
725716 TCTTTTTTTATT
1 T-TTTTTTTATT
725728 TTTTTTTTCATT
1 TTTTTTTT-ATT
725740 TTTTT
1 TTTTT
725745 AGTCTTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:725752 original size:11 final size:10
Alignment explanation
Indices: 725716--725767 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 10
725706 TCTTTTCCTT
725716 TCTTTTTTTA
1 TCTTTTTTTA
*
725726 T-TTTTTTTT
1 TCTTTTTTTA
725735 TCATTTTTTTA
1 TC-TTTTTTTA
725746 GTCTTTTTTTA
1 -TCTTTTTTTA
*
725757 CACTTTTTTTA
1 -TCTTTTTTTA
725768 CATGCCCTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 8 0.23
10 1 0.03
11 24 0.69
12 2 0.06
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.77
Consensus pattern (10 bp):
TCTTTTTTTA
Found at i:726440 original size:11 final size:11
Alignment explanation
Indices: 726424--726456 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
726414 CGTTTAAGAC
726424 TCTTTTCTTTT
1 TCTTTTCTTTT
726435 TCTTTTCTTTT
1 TCTTTTCTTTT
*
726446 T-TTCTCTTTT
1 TCTTTTCTTTT
726456 T
1 T
726457 TTTCTCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:728502 original size:19 final size:19
Alignment explanation
Indices: 728475--728511 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
728465 TAATAACAAG
*
728475 ATAAGAAACTAAAGAGAAT
1 ATAAAAAACTAAAGAGAAT
*
728494 ATAAAAAACTGAAGAGAA
1 ATAAAAAACTAAAGAGAA
728512 ATGTATGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.16, T:0.14
Consensus pattern (19 bp):
ATAAAAAACTAAAGAGAAT
Found at i:729314 original size:137 final size:137
Alignment explanation
Indices: 729065--729336 Score: 418
Period size: 137 Copynumber: 2.0 Consensus size: 137
729055 AGATTTGAAT
* * *
729065 GAGATATCATTAAAAACTCATAGGTAGGTTAAAACTGGCATATTCAAAAACAAATTTGAGTATCA
1 GAGATATCATTAAAAACTCATAAGTAGGTCAAAACTGGCAGATTCAAAAACAAATTTGAGTATCA
* * * *
729130 ATGAGAAATCAATAGAGTTGAGCTAGAAAATGAATTCAAATGTAAATTTTATTGGAAAATTTTGA
66 ATGAGAAATCAATAGAGTTAAGCTAGAAAATGAATTCAAATGCAAATTTTATCGGAAAATTCTGA
729195 AAGAAAG
131 AAGAAAG
** * * *
729202 GAGATATCATTAAAAACTTGTAAGTAGGTCAAAACTGGTAGATTCAAAAATAGATTTGAGTATCA
1 GAGATATCATTAAAAACTCATAAGTAGGTCAAAACTGGCAGATTCAAAAACAAATTTGAGTATCA
**
729267 ATGAGAAATCAATAGAGTTAAGCTAGAAAATGAATTCAAATGCAAATTTTATCGGACTATTCTGA
66 ATGAGAAATCAATAGAGTTAAGCTAGAAAATGAATTCAAATGCAAATTTTATCGGAAAATTCTGA
729332 AAGAA
131 AAGAA
729337 CACTTAAAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
137 121 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.28
Consensus pattern (137 bp):
GAGATATCATTAAAAACTCATAAGTAGGTCAAAACTGGCAGATTCAAAAACAAATTTGAGTATCA
ATGAGAAATCAATAGAGTTAAGCTAGAAAATGAATTCAAATGCAAATTTTATCGGAAAATTCTGA
AAGAAAG
Found at i:731371 original size:36 final size:36
Alignment explanation
Indices: 731326--731533 Score: 170
Period size: 36 Copynumber: 5.7 Consensus size: 36
731316 ATAACACTAT
731326 AAGTC-AAAAATAAAGAATGATCGAGATGACATCAC
1 AAGTCAAAAAATAAAGAATGATCGAGATGACATCAC
* *
731361 AAGTTAAAAAATAAAGAATGATCGGGATGACA-CTAC
1 AAGTCAAAAAATAAAGAATGATCGAGATGACATC-AC
* * * * ** *
731397 AAGTCAAAAAACAAGAAAATGATTGGGACAACATCAT
1 AAGTCAAAAAATAA-AGAATGATCGAGATGACATCAC
* * **
731434 AAGTTAAAAAAATAAAGAATGA-CTAGGATGACATTGC
1 AAG-TCAAAAAATAAAGAATGATCGA-GATGACATCAC
* ** * * *
731471 AAGTCAAAAAATGAAGAACAACCGGGATGACATCGC
1 AAGTCAAAAAATAAAGAATGATCGAGATGACATCAC
*
731507 AAGTCAAAAAATAAGAAAATGATCGAG
1 AAGTCAAAAAATAA-AGAATGATCGAG
731534 GCAACACTGC
Statistics
Matches: 132, Mismatches: 33, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
35 5 0.04
36 76 0.58
37 41 0.31
38 10 0.08
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (36 bp):
AAGTCAAAAAATAAAGAATGATCGAGATGACATCAC
Found at i:731413 original size:35 final size:34
Alignment explanation
Indices: 731314--731413 Score: 112
Period size: 36 Copynumber: 2.8 Consensus size: 34
731304 AAAAATATTA
* *
731314 GGATAACACTATAAGTCAAAAATAAAGAATGATCG
1 GGATGACACTACAAGTCAAAAA-AAAGAATGATCG
* *
731349 AGATGACA-TCACAAGTTAAAAAATAAAGAATGATCG
1 GGATGACACT-ACAAG-TCAAAAA-AAAGAATGATCG
731385 GGATGACACTACAAGTCAAAAAACAAGAA
1 GGATGACACTACAAGTCAAAAAA-AAGAA
731414 AATGATTGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
34 2 0.04
35 21 0.38
36 31 0.56
37 1 0.02
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.17
Consensus pattern (34 bp):
GGATGACACTACAAGTCAAAAAAAAGAATGATCG
Found at i:731465 original size:74 final size:69
Alignment explanation
Indices: 731312--731481 Score: 187
Period size: 74 Copynumber: 2.4 Consensus size: 69
731302 AAAAAAATAT
* * **
731312 TAGGATAACACTATAAGTCAAAAATAAAGAATGATCGAGATGACATCACAAGTTAAAAAATAAAG
1 TAGGATGACACTACAAGTCAAAAA-AAAGAATGATCGAGACAACATCACAAGTTAAAAAATAAAG
731377 AATGA
65 AATGA
* * * *
731382 TCGGGATGACACTACAAGTCAAAAAACAAGAAAATGATTGGGACAACATCATAAGTTAAAAAAAT
1 T-AGGATGACACTACAAGTCAAAAAA-AAG--AATGATCGAGACAACATCACAAGTT-AAAAAAT
731447 AAAGAATGA
61 AAAGAATGA
* *
731456 CTAGGATGACATTGCAAGTCAAAAAA
1 -TAGGATGACACTACAAGTCAAAAAA
731482 TGAAGAACAA
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
70 2 0.02
71 23 0.28
73 20 0.24
74 37 0.45
75 1 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (69 bp):
TAGGATGACACTACAAGTCAAAAAAAAGAATGATCGAGACAACATCACAAGTTAAAAAATAAAGA
ATGA
Found at i:731480 original size:110 final size:110
Alignment explanation
Indices: 731331--731529 Score: 276
Period size: 110 Copynumber: 1.8 Consensus size: 110
731321 ACTATAAGTC
* * ** *
731331 AAAAATAAAGAATGATCGAGATGACATCACAAGTTAAAAAATAAAGAATGATCGGGATGACA-CT
1 AAAAATAAAGAATGATAGAGATGACATCACAAGTCAAAAAATAAAGAACAACCGGGATGACATC-
731395 ACAAGTCAAAAAACAAGAAAATGATTGGGACAACATCATAAGTTAA
65 ACAAGTCAAAAAACAAGAAAATGATTGGGACAACATCATAAGTTAA
** *
731441 AAAAATAAAGAATGACTAG-GATGACATTGCAAGTCAAAAAATGAAGAACAACCGGGATGACATC
1 AAAAATAAAGAATGA-TAGAGATGACATCACAAGTCAAAAAATAAAGAACAACCGGGATGACATC
* *
731505 GCAAGTCAAAAAATAAGAAAATGAT
65 ACAAGTCAAAAAACAAGAAAATGAT
731530 CGAGGCAACA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
110 74 0.96
111 3 0.04
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.17
Consensus pattern (110 bp):
AAAAATAAAGAATGATAGAGATGACATCACAAGTCAAAAAATAAAGAACAACCGGGATGACATCA
CAAGTCAAAAAACAAGAAAATGATTGGGACAACATCATAAGTTAA
Found at i:731645 original size:35 final size:34
Alignment explanation
Indices: 731606--731735 Score: 100
Period size: 36 Copynumber: 3.7 Consensus size: 34
731596 TGATAGGAAT
731606 AACACCGCAAGTCAAAAAATAAAAGGCGACCAAAC
1 AACACCGCAAGTCAAAAAATAAAAGG-GACCAAAC
** * **
731641 AACACCATAAGTCAAAAAATAAAGAAGGATTGAGAA-
1 AACACCGCAAGTCAAAAAATAAA-AGGGA-CCA-AAC
** *
731677 AACACCTTAAGTCAAAAAATAAAAGGTGACCGAGAC
1 AACACCGCAAGTCAAAAAATAAAAGG-GACC-AAAC
* * *
731713 AACACTGCTAGTAAAAAAATAAA
1 AACACCGCAAGTCAAAAAATAAA
731736 GAACGATTGG
Statistics
Matches: 74, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
35 26 0.35
36 46 0.62
37 2 0.03
ACGTcount: A:0.55, C:0.18, G:0.15, T:0.12
Consensus pattern (34 bp):
AACACCGCAAGTCAAAAAATAAAAGGGACCAAAC
Found at i:731717 original size:36 final size:35
Alignment explanation
Indices: 731614--731717 Score: 120
Period size: 36 Copynumber: 2.9 Consensus size: 35
731604 ATAACACCGC
*
731614 AAGTCAAAAAATAAAAGGCGACC-AAACAACACCAT
1 AAGTCAAAAAATAAAAGG-GACCGAGACAACACCAT
* ** * *
731649 AAGTCAAAAAATAAAGAAGGATTGAGAAAACACCTT
1 AAGTCAAAAAATAAA-AGGGACCGAGACAACACCAT
731685 AAGTCAAAAAATAAAAGGTGACCGAGACAACAC
1 AAGTCAAAAAATAAAAGG-GACCGAGACAACAC
731718 TGCTAGTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
35 19 0.34
36 37 0.66
ACGTcount: A:0.56, C:0.17, G:0.15, T:0.12
Consensus pattern (35 bp):
AAGTCAAAAAATAAAAGGGACCGAGACAACACCAT
Found at i:731833 original size:36 final size:36
Alignment explanation
Indices: 731793--732026 Score: 206
Period size: 36 Copynumber: 6.6 Consensus size: 36
731783 ACAATATCGC
* *
731793 AAGTCAAAAAATAAAGAATGACTGGGATGATACCAT
1 AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
* * *
731829 AAGTCAAAAAATAAA-TATGACCAAGATGACACCAT
1 AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
* * **** * ** *
731864 ATGTTAAAAAATAAAGGGCAACT-GAACAACACCAC
1 AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
* **
731899 AAGTCAGAAAATAAAGAATGACTAGGACAACACCAT
1 AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
*
731935 AAGTTC-AAAAATAAAGAATGACTAGGATGACACCAC
1 AAG-TCAAAAAATAAAGAATGACTAGGATGACACCAT
* * ***
731971 AAGTCAAAAAATAAAGAACGATTAGGATGATGTCAT
1 AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
*
732007 AAGTCAAAAAATGAA-AATGA
1 AAGTCAAAAAATAAAGAATGA
732027 TCGAGATTGA
Statistics
Matches: 156, Mismatches: 38, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
35 57 0.37
36 97 0.62
37 2 0.01
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (36 bp):
AAGTCAAAAAATAAAGAATGACTAGGATGACACCAT
Found at i:731839 original size:72 final size:69
Alignment explanation
Indices: 731614--731843 Score: 196
Period size: 72 Copynumber: 3.2 Consensus size: 69
731604 ATAACACCGC
* *
731614 AAGTCAAAAAATAAAAGGCGACCA-AACAACAC-CATAAGTCAAAAAATAAAGAAGGATTGAGAA
1 AAGTCAAAAAATAAAAGGCGACCAGAACAACACGC--AAGTCAAAAAATAAAGAACGATTG-GGA
*
731677 AACACCTT
63 AA-ACCAT
* * * *
731685 AAGTCAAAAAATAAAAGGTGACC-GAGACAACACTGCTAGTAAAAAAATAAAGAACGATTGGGAC
1 AAGTCAAAAAATAAAAGGCGACCAGA-ACAACAC-GCAAGTCAAAAAATAAAGAACGATTGGGAA
*
731749 AACTCTAC
64 AAC-C-AT
** * * * * *
731757 AAGTTGAAAAATAAAGGGCAACCAGAACAATATCGCAAGTCAAAAAATAAAGAATGACTGGGATG
1 AAGTCAAAAAATAAAAGGCGACCAGAACAACA-CGCAAGTCAAAAAATAAAGAACGATTGGGA--
*
731822 ATACCAT
63 AAACCAT
731829 AAGTCAAAAAATAAA
1 AAGTCAAAAAATAAA
731844 TATGACCAAG
Statistics
Matches: 126, Mismatches: 23, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
70 2 0.02
71 27 0.21
72 90 0.71
73 4 0.03
74 3 0.02
ACGTcount: A:0.53, C:0.15, G:0.17, T:0.15
Consensus pattern (69 bp):
AAGTCAAAAAATAAAAGGCGACCAGAACAACACGCAAGTCAAAAAATAAAGAACGATTGGGAAAA
CCAT
Found at i:731912 original size:106 final size:108
Alignment explanation
Indices: 731763--731986 Score: 283
Period size: 106 Copynumber: 2.1 Consensus size: 108
731753 CTACAAGTTG
* * * * ** *
731763 AAAAATAAAGGGCAACCAGAACAATATCGCAAGTCAAAAAATAAAGAATGACTGGGATGATACCA
1 AAAAATAAAGGGCAACCAGAACAACACCACAAGTCAAAAAATAAAGAATGACTAGGACAACACCA
* * * *
731828 TAAG-TCAAAAAATAAA-TATGACCAAGATGACACCATATGTTA
66 TAAGTTC-AAAAATAAAGAATGACCAAGATGACACCACAAGTCA
* *
731870 AAAAATAAAGGGCAA-CTGAACAACACCACAAGTCAGAAAATAAAGAATGACTAGGACAACACCA
1 AAAAATAAAGGGCAACCAGAACAACACCACAAGTCAAAAAATAAAGAATGACTAGGACAACACCA
* *
731934 TAAGTTCAAAAATAAAGAATGACTAGGATGACACCACAAGTCA
66 TAAGTTCAAAAATAAAGAATGACCAAGATGACACCACAAGTCA
731977 AAAAATAAAG
1 AAAAATAAAG
731987 AACGATTAGG
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 53 0.53
107 47 0.47
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.15
Consensus pattern (108 bp):
AAAAATAAAGGGCAACCAGAACAACACCACAAGTCAAAAAATAAAGAATGACTAGGACAACACCA
TAAGTTCAAAAATAAAGAATGACCAAGATGACACCACAAGTCA
Found at i:732089 original size:35 final size:35
Alignment explanation
Indices: 732007--732194 Score: 141
Period size: 35 Copynumber: 5.3 Consensus size: 35
731997 ATGATGTCAT
*
732007 AAGTCAAAAAATGAAAATGATCGAGATTGAACTGC
1 AAGTCAAAAAATGAAAATGATCGAGATTGAACCGC
* * * * * *
732042 GAGGCGAGAAAT-AAATATGATCGAGATTGAGCCAC
1 AAGTCAAAAAATGAAA-ATGATCGAGATTGAACCGC
* * **
732077 AAGTCAAAAAATAAAAAATGATCAAGA-TGATATTGC
1 AAGTCAAAAAAT-GAAAATGATCGAGATTGA-ACCGC
* *
732113 AAGTCAAAAAATGAAAATGATTGAGATTAAACCGC
1 AAGTCAAAAAATGAAAATGATCGAGATTGAACCGC
* * * * *
732148 AAGTCAAGAAAT-AAATATGACCAAGACT-AAGCCAC
1 AAGTCAAAAAATGAAA-ATGATCGAGATTGAA-CCGC
732183 AAGTCAAAAAAT
1 AAGTCAAAAAAT
732195 AAAGAACAAT
Statistics
Matches: 117, Mismatches: 29, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
34 8 0.07
35 82 0.70
36 24 0.21
37 3 0.03
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (35 bp):
AAGTCAAAAAATGAAAATGATCGAGATTGAACCGC
Found at i:732106 original size:106 final size:106
Alignment explanation
Indices: 731967--732197 Score: 300
Period size: 106 Copynumber: 2.2 Consensus size: 106
731957 TAGGATGACA
* * * * *
731967 CCACAAGTCAAAAAATAAAGAACGATTAGGATGATGTCATAAGTCAAAAAATGAAAATGATCGAG
1 CCACAAGTCAAAAAATAAAAAACGATCAAGATGATATCACAAGTCAAAAAATGAAAATGATCGAG
* * * * * * * *
732032 ATTGAACTGCGAGGCGAGAAATAAATATGATCGAGATTGAG
66 ATTAAACCGCAAGGCAAGAAATAAATATGACCAAGACTAAG
* ** *
732073 CCACAAGTCAAAAAATAAAAAATGATCAAGATGATATTGCAAGTCAAAAAATGAAAATGATTGAG
1 CCACAAGTCAAAAAATAAAAAACGATCAAGATGATATCACAAGTCAAAAAATGAAAATGATCGAG
*
732138 ATTAAACCGCAAGTCAAGAAATAAATATGACCAAGACTAAG
66 ATTAAACCGCAAGGCAAGAAATAAATATGACCAAGACTAAG
732179 CCACAAGTCAAAAAATAAA
1 CCACAAGTCAAAAAATAAA
732198 GAACAATTGA
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
106 107 1.00
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (106 bp):
CCACAAGTCAAAAAATAAAAAACGATCAAGATGATATCACAAGTCAAAAAATGAAAATGATCGAG
ATTAAACCGCAAGGCAAGAAATAAATATGACCAAGACTAAG
Found at i:732133 original size:71 final size:71
Alignment explanation
Indices: 732007--732162 Score: 165
Period size: 71 Copynumber: 2.2 Consensus size: 71
731997 ATGATGTCAT
* * * * * *
732007 AAGTCAAAAAAT-GAAAATGATCGAGATTGAACTGCGAGGCGAGAAATAAATATGATCGAGATTG
1 AAGTCAAAAAATAAAAAATGATCAAGATTGAACTGCAAGGCAAAAAATAAATATGATCGAGATTA
*
732071 AGCCAC
66 AACCAC
* * *
732077 AAGTCAAAAAATAAAAAATGATCAAGA-TGATATTGCAAGTCAAAAAATGAAA-ATGATTGAGAT
1 AAGTCAAAAAATAAAAAATGATCAAGATTGA-ACTGCAAGGCAAAAAAT-AAATATGATCGAGAT
*
732140 TAAACCGC
64 TAAACCAC
*
732148 AAGTCAAGAAATAAA
1 AAGTCAAAAAATAAA
732163 TATGACCAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
70 15 0.21
71 53 0.75
72 3 0.04
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (71 bp):
AAGTCAAAAAATAAAAAATGATCAAGATTGAACTGCAAGGCAAAAAATAAATATGATCGAGATTA
AACCAC
Found at i:732223 original size:106 final size:106
Alignment explanation
Indices: 732004--732242 Score: 255
Period size: 106 Copynumber: 2.2 Consensus size: 106
731994 AGGATGATGT
* * * * * * *
732004 CATAAGTCAAAAAATGAAAATGATCGAGATTGAACTGCGAGGCGAGAAATAAATATGATCGAGAT
1 CATAAGTCAAAAAATGAAAATGATCGAGATTAAACCGCAAGGCAAGAAATAAATATGACCAAGAC
* ** ** * *
732069 TGAGCCACAAGTCAAAAAATAAAAAATGATCAAGATGATAT
66 TAAGCCACAAGTCAAAAAATAAAAAACAATCAAGACAACAC
*** * *
732110 TGCAAGTCAAAAAATGAAAATGATTGAGATTAAACCGCAAGTCAAGAAATAAATATGACCAAGAC
1 CATAAGTCAAAAAATGAAAATGATCGAGATTAAACCGCAAGGCAAGAAATAAATATGACCAAGAC
* *
732175 TAAGCCACAAGTCAAAAAATAAAGAACAATTGAA-ACAACAC
66 TAAGCCACAAGTCAAAAAATAAAAAACAA-TCAAGACAACAC
*
732216 CATAAGTCAAAAAATAAAGAATGATCG
1 CATAAGTCAAAAAATGAA-AATGATCG
732243 GGACAACAAC
Statistics
Matches: 105, Mismatches: 26, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
106 95 0.90
107 10 0.10
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.18
Consensus pattern (106 bp):
CATAAGTCAAAAAATGAAAATGATCGAGATTAAACCGCAAGGCAAGAAATAAATATGACCAAGAC
TAAGCCACAAGTCAAAAAATAAAAAACAATCAAGACAACAC
Found at i:732277 original size:38 final size:36
Alignment explanation
Indices: 732209--732307 Score: 117
Period size: 38 Copynumber: 2.7 Consensus size: 36
732199 AACAATTGAA
* * *
732209 ACAACACCATAAGTCAAAAAATAAAGAATGATCGGG
1 ACAACAACATAAGTCAAAAAATAAAAAATGATCAGG
*
732245 ACAACAACGTAAGTCAAAAAAATAAGAAAATGATCAGG
1 ACAACAACATAAGTC-AAAAAATAA-AAAATGATCAGG
* * *
732283 ACAATACCACAAGTCAAAAAATAAA
1 ACAACAACATAAGTCAAAAAATAAA
732308 GAACAATCGA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
36 14 0.26
37 18 0.34
38 21 0.40
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.13
Consensus pattern (36 bp):
ACAACAACATAAGTCAAAAAATAAAAAATGATCAGG
Found at i:732310 original size:38 final size:38
Alignment explanation
Indices: 732179--732310 Score: 134
Period size: 36 Copynumber: 3.6 Consensus size: 38
732169 CAAGACTAAG
732179 CCACAAGTCAAAAAATAAAGAACAATTGA--A--ACAACA
1 CCACAAGTCAAAAAATAAAGAA-AA-TGATCAGGACAACA
* *
732215 CCATAAGTCAAAAAATAAAG--AATGATCGGGACAACA
1 CCACAAGTCAAAAAATAAAGAAAATGATCAGGACAACA
* ** *
732251 ACGTAAGTCAAAAAA-ATAAGAAAATGATCAGGACAATA
1 CCACAAGTCAAAAAATA-AAGAAAATGATCAGGACAACA
732289 CCACAAGTCAAAAAATAAAGAA
1 CCACAAGTCAAAAAATAAAGAA
732311 CAATCGAGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
32 3 0.04
33 2 0.03
35 1 0.01
36 41 0.52
38 31 0.39
39 1 0.01
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.13
Consensus pattern (38 bp):
CCACAAGTCAAAAAATAAAGAAAATGATCAGGACAACA
Found at i:732478 original size:33 final size:32
Alignment explanation
Indices: 732408--732484 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 32
732398 TGCTAGATAG
*
732408 ACTAGGCTTAAAATTCATTGAAGGCTAGCTAA
1 ACTAGGCTTAAAATTCATTGAAGGCTAACTAA
* *
732440 ACTAGGCTTAAAATTTCATT-ACGTGCTAATTAA
1 ACTAGGCTTAAAA-TTCATTGAAG-GCTAACTAA
*
732473 TCTAGGCTTAAA
1 ACTAGGCTTAAA
732485 TCTTTCTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 15 0.38
33 24 0.62
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (32 bp):
ACTAGGCTTAAAATTCATTGAAGGCTAACTAA
Found at i:732543 original size:28 final size:28
Alignment explanation
Indices: 732503--732573 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
732493 TGGTGTCAAA
* * *
732503 TAAACTGGGCTTAAGATTGAATGCCAAC
1 TAAACTAGGCTTAAAAATGAATGCCAAC
**
732531 TAAACTAGGCTTAAAAATGCGTGCCAAC
1 TAAACTAGGCTTAAAAATGAATGCCAAC
*
732559 TAAACTATGCTTAAA
1 TAAACTAGGCTTAAA
732574 TCTTTCTTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (28 bp):
TAAACTAGGCTTAAAAATGAATGCCAAC
Found at i:732625 original size:90 final size:88
Alignment explanation
Indices: 732474--732695 Score: 302
Period size: 90 Copynumber: 2.5 Consensus size: 88
732464 GCTAATTAAT
* * *
732474 CTAGGCTTAAATCTTTCTTTGGTGTCAAATAAACTGGGCTTAAGATTGAATGCCAACTAAACTAG
1 CTAGGCTTAAATCTTTCTTTGGTGCCAAATAAACTGGGCTTAAAAATGAATGCCAACTAAACTAG
732539 GCTTAAAAAT-GCGTGCCAACTAAA
66 GCTTAAAAATAG-GTGCCAA-TAAA
* * * * * ** *
732563 CTATGCTTAAATCTTTCTTTGGGGGCCAGATAAATTTGGCTTAAAAATGGGTGCCAAGTAAACTA
1 CTAGGCTTAAATCTTTCTTT-GGTGCCAAATAAACTGGGCTTAAAAATGAATGCCAACTAAACTA
*
732628 GGTTTAAAAATAGGTGCCAATAAA
65 GGCTTAAAAATAGGTGCCAATAAA
732652 CTAGGCTTAAATCTTTCTTTGGTGCCAAATAAACTGGGCTTAAA
1 CTAGGCTTAAATCTTTCTTTGGTGCCAAATAAACTGGGCTTAAA
732696 TTTTCACTGG
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
88 20 0.18
89 42 0.37
90 51 0.45
91 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (88 bp):
CTAGGCTTAAATCTTTCTTTGGTGCCAAATAAACTGGGCTTAAAAATGAATGCCAACTAAACTAG
GCTTAAAAATAGGTGCCAATAAA
Found at i:732651 original size:27 final size:28
Alignment explanation
Indices: 732600--732662 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
732590 AGATAAATTT
*
732600 GGCTTAAAAATGGGTGCCAAGTAAACTA
1 GGCTTAAAAATAGGTGCCAAGTAAACTA
*
732628 GGTTTAAAAATAGGTGCCAA-TAAACTA
1 GGCTTAAAAATAGGTGCCAAGTAAACTA
732655 GGCTTAAA
1 GGCTTAAA
732663 TCTTTCTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 14 0.44
28 18 0.56
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (28 bp):
GGCTTAAAAATAGGTGCCAAGTAAACTA
Found at i:732686 original size:33 final size:31
Alignment explanation
Indices: 732640--732700 Score: 95
Period size: 33 Copynumber: 1.9 Consensus size: 31
732630 TTTAAAAATA
732640 GGTGCCAATAAACTAGGCTTAAATCTTTCTTT
1 GGTGCCAATAAACTAGGCTTAAAT-TTTCTTT
*
732672 GGTGCCAAATAAACTGGGCTTAAATTTTC
1 GGTGCC-AATAAACTAGGCTTAAATTTTC
732701 ACTGGGTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (31 bp):
GGTGCCAATAAACTAGGCTTAAATTTTCTTT
Found at i:732923 original size:32 final size:33
Alignment explanation
Indices: 732834--732933 Score: 98
Period size: 32 Copynumber: 3.0 Consensus size: 33
732824 GCTTAAACTT
*
732834 TCTTCATCAAGTGCTAGGTAAACTAAGCTTAAAA
1 TCTTCATCAAGTGCTA-GTAAACTAGGCTTAAAA
* * *
732868 TTTTCATTAA-TAGCTA-TATAACT-GGATTAAAA
1 TCTTCATCAAGT-GCTAGTA-AACTAGGCTTAAAA
* *
732900 TCTTCATCAAGTGCCAGTAAACTGGGCTTAAAA
1 TCTTCATCAAGTGCTAGTAAACTAGGCTTAAAA
732933 T
1 T
732934 TTTGTGGAGA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
32 24 0.45
33 17 0.32
34 12 0.23
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (33 bp):
TCTTCATCAAGTGCTAGTAAACTAGGCTTAAAA
Found at i:733124 original size:22 final size:22
Alignment explanation
Indices: 733099--733181 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
733089 ATACTTTTTA
*
733099 AACTCATATGGGCTTATGTGCC
1 AACTAATATGGGCTTATGTGCC
* * *
733121 AACTAATCTAGGCTTATATGCC
1 AACTAATATGGGCTTATGTGCC
* **
733143 AGCTGAA-CCGGGCTTAATGTGCC
1 AACT-AATATGGGCTT-ATGTGCC
733166 AACTAATATGGGCTTA
1 AACTAATATGGGCTTA
733182 AGACTTCATT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
22 30 0.64
23 17 0.36
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
AACTAATATGGGCTTATGTGCC
Found at i:736996 original size:8 final size:8
Alignment explanation
Indices: 736983--737017 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
736973 TAGATACATA
736983 AATGGATG
1 AATGGATG
736991 AATGGATG
1 AATGGATG
**
736999 AATAAATG
1 AATGGATG
737007 AATGGATG
1 AATGGATG
737015 AAT
1 AAT
737018 ACACAAATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.26
Consensus pattern (8 bp):
AATGGATG
Found at i:737009 original size:16 final size:16
Alignment explanation
Indices: 736988--737018 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
736978 ACATAAATGG
736988 ATGAATGGATGAATAA
1 ATGAATGGATGAATAA
737004 ATGAATGGATGAATA
1 ATGAATGGATGAATA
737019 CACAAATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (16 bp):
ATGAATGGATGAATAA
Found at i:738410 original size:12 final size:12
Alignment explanation
Indices: 738378--738410 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
738368 TCCTAAATTT
738378 TTTTTTTTTGCC
1 TTTTTTTTTGCC
*
738390 TTTTGTTTTGCC
1 TTTTTTTTTGCC
738402 TTTTTTTTT
1 TTTTTTTTT
738411 TCAATCTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.09, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTGCC
Found at i:739926 original size:12 final size:12
Alignment explanation
Indices: 739909--739938 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
739899 TTTCTTTCAA
739909 TATCATCATCAT
1 TATCATCATCAT
739921 TATCATCATCAT
1 TATCATCATCAT
*
739933 CATCAT
1 TATCAT
739939 TATTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (12 bp):
TATCATCATCAT
Found at i:740247 original size:15 final size:13
Alignment explanation
Indices: 740184--740241 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
740174 ATATTCCAAT
*
740184 TAAAGTAATTTTC
1 TAAAATAATTTTC
*
740197 TAAAATAATATTC
1 TAAAATAATTTTC
** *
740210 T-ACCT-CTTTTC
1 TAAAATAATTTTC
740221 TAAAATAATTTTC
1 TAAAATAATTTTC
740234 TAAAATAA
1 TAAAATAA
740242 AATTTTATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
11 5 0.15
12 4 0.12
13 25 0.74
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (13 bp):
TAAAATAATTTTC
Found at i:741127 original size:17 final size:18
Alignment explanation
Indices: 741105--741145 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
741095 AATATCTCGA
*
741105 AAAAAAAAGCTT-TAAAG
1 AAAAAAAAGCTTAAAAAG
*
741122 AAAAAAATGCTTAAAAAG
1 AAAAAAAAGCTTAAAAAG
741140 AAAAAA
1 AAAAAA
741146 CATGTGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15
Consensus pattern (18 bp):
AAAAAAAAGCTTAAAAAG
Found at i:754788 original size:21 final size:21
Alignment explanation
Indices: 754762--754836 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
754752 GAAGAAAACA
754762 GGATCGATCCCTTTTGCTAGG
1 GGATCGATCCCTTTTGCTAGG
**** ** *
754783 GGATCGATTTGGTAAG-GAGG
1 GGATCGATCCCTTTTGCTAGG
754803 GGATCGATCCCTTTT-CTTAGG
1 GGATCGATCCCTTTTGC-TAGG
754824 GGATCGATCCCTT
1 GGATCGATCCCTT
754837 CTATCAAAAC
Statistics
Matches: 38, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
20 12 0.32
21 26 0.68
ACGTcount: A:0.17, C:0.20, G:0.31, T:0.32
Consensus pattern (21 bp):
GGATCGATCCCTTTTGCTAGG
Found at i:755158 original size:37 final size:37
Alignment explanation
Indices: 755070--755222 Score: 153
Period size: 37 Copynumber: 4.1 Consensus size: 37
755060 TAACACTACC
* * *
755070 ATTAAAATATGCATAAGATGGAATGCATGTACCACCT
1 ATTAAAATATGCATGAGATGGAATGCATGTACTATCT
* *
755107 ATTAAAATGTGCATGAGATGGAATGCATATACTATCT
1 ATTAAAATATGCATGAGATGGAATGCATGTACTATCT
* * * **
755144 ATTAATATATGCATGAAATAGAATTTATGTACTATCT
1 ATTAAAATATGCATGAGATGGAATGCATGTACTATCT
* * * * * *
755181 ATTAATATATCCATGAAATAGAGTCCATGTACTATCTT
1 ATTAAAATATGCATGAGATGGAATGCATGTACTATC-T
755219 ATTA
1 ATTA
755223 TTTTTAACTC
Statistics
Matches: 99, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
37 94 0.95
38 5 0.05
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (37 bp):
ATTAAAATATGCATGAGATGGAATGCATGTACTATCT
Found at i:755474 original size:32 final size:32
Alignment explanation
Indices: 755429--755492 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
755419 TAAGAAAAAA
755429 TTTCTCTTATTCTTTTATT-TTTTTGTAGCTTTT
1 TTTCTCTTATTCTTTT-TTCTTTTTGTAG-TTTT
* *
755462 TTTCT-TTTTTCTTTTTTCTTTTTTTAGTTTT
1 TTTCTCTTATTCTTTTTTCTTTTTGTAGTTTT
755493 GTTGGAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 6 0.21
32 17 0.61
33 5 0.18
ACGTcount: A:0.06, C:0.11, G:0.05, T:0.78
Consensus pattern (32 bp):
TTTCTCTTATTCTTTTTTCTTTTTGTAGTTTT
Found at i:755486 original size:8 final size:7
Alignment explanation
Indices: 755459--755485 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
755449 TTTTGTAGCT
755459 TTTTTTC
1 TTTTTTC
755466 TTTTTTC
1 TTTTTTC
755473 TTTTTTC
1 TTTTTTC
755480 TTTTTT
1 TTTTTT
755486 TAGTTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:757425 original size:50 final size:50
Alignment explanation
Indices: 757358--757461 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
757348 GATTGCATGA
* * * *
757358 AACAAAATTTCCTAAATGCCATTGATAAAAATGTAAACTTTAATGAATGT
1 AACAAAATTTACTAAATGCCATTAATAAAAATGCAAACTTTAATGAATGG
* * *
757408 AACAAAA-TTACTAAAATGCCATTAATTAAAATGCAAATTTTAATGCATGG
1 AACAAAATTTACT-AAATGCCATTAATAAAAATGCAAACTTTAATGAATGG
757458 AACA
1 AACA
757462 CGTATGAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
49 4 0.09
50 42 0.91
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (50 bp):
AACAAAATTTACTAAATGCCATTAATAAAAATGCAAACTTTAATGAATGG
Found at i:759057 original size:143 final size:141
Alignment explanation
Indices: 758720--759120 Score: 373
Period size: 143 Copynumber: 2.8 Consensus size: 141
758710 GATTTTAAAG
* * * *
758720 CACCAAATATCTTGAAATATTATGAAATTATGATTCGAAAGTTTTCATGAAAAAT-GACCACGAA
1 CACCAAAAATCTTGAATTATTATGAAATTATGATT-GAAAGTTTTCAT-AAAAATCGACCTCGAG
* * * * * *
758784 AATGTCAAATTACAAAAATATCTTTAAAGGGTATTATGGTAATTTCACACCTCTAAGGTGCTATC
64 AAGGTCAAATTACAAAAATATCTTTAAAGGGTATTCTAGTAATTTCACACATCTAAGGTACAATC
*
758849 AAGGTTTTTTTATG
129 AAGG-TTTTTTATA
* * ** * * *
758863 CACCAAAAAT-TATAAAATAATT-T-AAAACATGATCT-AAAATGTTTCGCTAAAAATCAACCTC
1 CACCAAAAATCT-T-GAATTATTATGAAATTATGAT-TGAAAGT-TTTC-ATAAAAATCGACCTC
* * * * *
758924 GAGAAGGTCAAATTATAAAAATATCTCTAAAGGTTATTCTAGTAATTTCACACATTTCGAGGTAC
61 GAGAAGGTCAAATTACAAAAATATCTTTAAAGGGTATTCTAGTAATTTCACACATCT-AAGGTAC
758989 AATCAAGG-TTTTTACTA
125 AATCAAGGTTTTTTA-TA
* * * *
759006 CATCAAAAATCTTGAATTATTATGAAATTATGATATGAAAGTTTTCATAAAAAACGACATCAAGA
1 CACCAAAAATCTTGAATTATTATGAAATTATGAT-TGAAAGTTTTCATAAAAATCGACCTCGAGA
* * * *
759071 AGGTTAAATTACAAAAATACCCTTTTAAGGGCATTCTAGTAATTTCACAC
65 AGGTCAAATTACAAAAATA-TCTTTAAAGGGTATTCTAGTAATTTCACAC
759121 CTTCTGAAGT
Statistics
Matches: 203, Mismatches: 42, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
141 4 0.02
142 31 0.15
143 108 0.53
144 56 0.28
145 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (141 bp):
CACCAAAAATCTTGAATTATTATGAAATTATGATTGAAAGTTTTCATAAAAATCGACCTCGAGAA
GGTCAAATTACAAAAATATCTTTAAAGGGTATTCTAGTAATTTCACACATCTAAGGTACAATCAA
GGTTTTTTATA
Found at i:763266 original size:17 final size:17
Alignment explanation
Indices: 763244--763276 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
763234 TAATAAATTG
763244 ATGAACTATAAGCAAAT
1 ATGAACTATAAGCAAAT
*
763261 ATGAACTATAATCAAA
1 ATGAACTATAAGCAAA
763277 ATAAAGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
ATGAACTATAAGCAAAT
Found at i:765579 original size:16 final size:16
Alignment explanation
Indices: 765558--765592 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
765548 ATACAAGCTC
*
765558 ATACCAATTGTTAATG
1 ATACCAATTGTTAAAG
765574 ATACCAATTGTTAAAG
1 ATACCAATTGTTAAAG
765590 ATA
1 ATA
765593 TGTCATCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (16 bp):
ATACCAATTGTTAAAG
Found at i:769975 original size:17 final size:17
Alignment explanation
Indices: 769953--769985 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
769943 TAATGAATTG
769953 ATGAACTATAAGCAAAT
1 ATGAACTATAAGCAAAT
*
769970 ATGAACTATAATCAAA
1 ATGAACTATAAGCAAA
769986 ATAAAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
ATGAACTATAAGCAAAT
Found at i:772370 original size:19 final size:19
Alignment explanation
Indices: 772348--772389 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
772338 ATGTTGTTGA
*
772348 CTTTAATTTT-GCTTATGCT
1 CTTTAATTTTAG-TTAAGCT
772367 CTTTAATTTTAGTTAAGCT
1 CTTTAATTTTAGTTAAGCT
772386 CTTT
1 CTTT
772390 CATGTTCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (19 bp):
CTTTAATTTTAGTTAAGCT
Found at i:775588 original size:18 final size:20
Alignment explanation
Indices: 775567--775605 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
775557 CACAAATCAA
775567 ATCTT-AAAACCC-AAAGTC
1 ATCTTCAAAACCCTAAAGTC
*
775585 ATCTTCTAAACCCTAAAGTC
1 ATCTTCAAAACCCTAAAGTC
775605 A
1 A
775606 AACCCTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.41, C:0.28, G:0.05, T:0.26
Consensus pattern (20 bp):
ATCTTCAAAACCCTAAAGTC
Found at i:775594 original size:20 final size:21
Alignment explanation
Indices: 775571--775667 Score: 96
Period size: 20 Copynumber: 4.8 Consensus size: 21
775561 AATCAAATCT
*
775571 TAAAACCCAAAGTC-ATCTTC
1 TAAAACCCAAAGTCAAACTTC
*
775591 T-AAACCCTAAAGTCAAAC-CC
1 TAAAACCC-AAAGTCAAACTTC
*
775611 TAAAACCTAAAGTCAAACTT-
1 TAAAACCCAAAGTCAAACTTC
* *
775631 TAAAACCTAAAGTCAAAC-CC
1 TAAAACCCAAAGTCAAACTTC
*
775651 TAAAACTCAAAGTCAAA
1 TAAAACCCAAAGTCAAA
775668 TCCTTAACCT
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
19 6 0.09
20 52 0.80
21 7 0.11
ACGTcount: A:0.48, C:0.27, G:0.05, T:0.20
Consensus pattern (21 bp):
TAAAACCCAAAGTCAAACTTC
Found at i:775615 original size:40 final size:39
Alignment explanation
Indices: 775571--775693 Score: 158
Period size: 40 Copynumber: 3.1 Consensus size: 39
775561 AATCAAATCT
*
775571 TAAAACCCAAAGTCATCTTCTAAACCCTAAAGTCAAACCC
1 TAAAACCCAAAGTCAACTTCTAAA-CCTAAAGTCAAACCC
*
775611 TAAAACCTAAAGTCAAACTT-TAAAACCTAAAGTCAAACCC
1 TAAAACCCAAAGTC-AACTTCT-AAACCTAAAGTCAAACCC
* * * *
775651 TAAAACTCAAAGTCAAATCCTTAACCTAAAGTCAAACCC
1 TAAAACCCAAAGTCAACTTCTAAACCTAAAGTCAAACCC
775690 TAAA
1 TAAA
775694 CCTTATATTA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
39 24 0.33
40 42 0.58
41 7 0.10
ACGTcount: A:0.47, C:0.28, G:0.05, T:0.20
Consensus pattern (39 bp):
TAAAACCCAAAGTCAACTTCTAAACCTAAAGTCAAACCC
Found at i:775688 original size:39 final size:39
Alignment explanation
Indices: 775602--775696 Score: 93
Period size: 39 Copynumber: 2.4 Consensus size: 39
775592 AAACCCTAAA
* **
775602 GTCAAACCCTAAAACCTAAAGTCAAACTTTAAAACCTAAA
1 GTCAAA-CCTTAAACCTAAAGTCAAACCCTAAAACCTAAA
* * * *
775642 GTCAAACCCTAAAACTCAAAGTCAAATCCT-TAACCTAAA
1 GTCAAACCTTAAACCT-AAAGTCAAACCCTAAAACCTAAA
*
775681 GTCAAACCCTAAACCT
1 GTCAAACCTTAAACCT
775697 TATATTAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
39 30 0.65
40 16 0.35
ACGTcount: A:0.46, C:0.28, G:0.05, T:0.20
Consensus pattern (39 bp):
GTCAAACCTTAAACCTAAAGTCAAACCCTAAAACCTAAA
Found at i:775811 original size:23 final size:24
Alignment explanation
Indices: 775767--775814 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
775757 TCACAAAAAC
*
775767 TCTAACCTTAATCAAAACCCTAAA
1 TCTAACCTTAAACAAAACCCTAAA
*
775791 TCTAACC-TAAACCAAACCCTAAA
1 TCTAACCTTAAACAAAACCCTAAA
775814 T
1 T
775815 TGTGCTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (24 bp):
TCTAACCTTAAACAAAACCCTAAA
Found at i:775958 original size:26 final size:25
Alignment explanation
Indices: 775913--775966 Score: 58
Period size: 26 Copynumber: 2.1 Consensus size: 25
775903 TAAATTATTT
775913 AAATCTTGAAACAAGTCAAATC-CCA
1 AAATCTTGAAACAAGTCAAA-CACCA
*
775938 AAATCTTGAACCCAA-TCCAAACACCA
1 AAATCTTGAA-ACAAGT-CAAACACCA
775964 AAA
1 AAA
775967 ATCATTCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.17
Consensus pattern (25 bp):
AAATCTTGAAACAAGTCAAACACCA
Found at i:777341 original size:14 final size:14
Alignment explanation
Indices: 777322--777350 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
777312 TCGAAAAAAG
777322 ATATTATTGTTGTA
1 ATATTATTGTTGTA
777336 ATATTATTGTTGTA
1 ATATTATTGTTGTA
777350 A
1 A
777351 CATGAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (14 bp):
ATATTATTGTTGTA
Found at i:779292 original size:17 final size:17
Alignment explanation
Indices: 779270--779306 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
779260 ATCAAAATTT
* *
779270 TGATAATTTTATCACTA
1 TGATAATTATATCACAA
779287 TGATAATTATATCACAA
1 TGATAATTATATCACAA
779304 TGA
1 TGA
779307 GGATTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (17 bp):
TGATAATTATATCACAA
Found at i:781340 original size:257 final size:257
Alignment explanation
Indices: 780884--781398 Score: 908
Period size: 257 Copynumber: 2.0 Consensus size: 257
780874 CAACCTTGTG
*
780884 TGGTTGAGGCTGAGGTTAAGTTGGAACTCTAAGGCTGTCCATAATGGATGCTGAAACAAAGTTCA
1 TGGTTGAGGCTGAGGTTAAGTTGGAACTCTAAGGCTGTCCATAATGGAAGCTGAAACAAAGTTCA
780949 TACAACTTCTATCCTAAATGATAAGTCTTTTAGCTTGATCACCACAATAAATCAAAGTTTTGAAT
66 TACAACTTCTATCCTAAATGATAAGTCTTTTAGCTTGATCACCACAATAAATCAAAGTTTTGAAT
* *
781014 ATTGTAGATTTCCACTAGTCTGTTTTTCAATTTTAGGAGCTGCTAGAATGCATTTAACAATGCAC
131 ATTGTAGATCTCCACCAGTCTGTTTTTCAATTTTAGGAGCTGCTAGAATGCATTTAACAATGCAC
*
781079 AAGGGAGAAATATATCCACATAACAATTATCTTCAAGATCATCAGC-AAGAGAAGTCCTATCA
196 AAGGGAGAAATATATCCACATAACAATTATCTTCAAGATCATCAGCTAA-AGAAGTCCCATCA
* *
781141 TGGTTGAGGCTGAGGTTAAGTTGGAACTTTAAGGCTGTCCATCATGGAAGCTGAAACAAAGTTCA
1 TGGTTGAGGCTGAGGTTAAGTTGGAACTCTAAGGCTGTCCATAATGGAAGCTGAAACAAAGTTCA
**
781206 TACAACTTCTATCCTAAATGATAAGTCTTTTAGCTTGATCACTTCAATAAATCAAAGTTTTGAAT
66 TACAACTTCTATCCTAAATGATAAGTCTTTTAGCTTGATCACCACAATAAATCAAAGTTTTGAAT
781271 ATTGTAG-TCCTCCACCAGTCTGTTTTTCAATTTTAGGAGCTGCTAGAATGCATTTAACAATGCA
131 ATTGTAGAT-CTCCACCAGTCTGTTTTTCAATTTTAGGAGCTGCTAGAATGCATTTAACAATGCA
**
781335 CAAGGGAGAAATATATCCACATAATGATTATCTTCAAGATCATCAGCTAAAGAAGTCCCATCA
195 CAAGGGAGAAATATATCCACATAACAATTATCTTCAAGATCATCAGCTAAAGAAGTCCCATCA
781398 T
1 T
781399 CAACTGAGTT
Statistics
Matches: 246, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
256 1 0.00
257 243 0.99
258 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (257 bp):
TGGTTGAGGCTGAGGTTAAGTTGGAACTCTAAGGCTGTCCATAATGGAAGCTGAAACAAAGTTCA
TACAACTTCTATCCTAAATGATAAGTCTTTTAGCTTGATCACCACAATAAATCAAAGTTTTGAAT
ATTGTAGATCTCCACCAGTCTGTTTTTCAATTTTAGGAGCTGCTAGAATGCATTTAACAATGCAC
AAGGGAGAAATATATCCACATAACAATTATCTTCAAGATCATCAGCTAAAGAAGTCCCATCA
Found at i:789547 original size:25 final size:25
Alignment explanation
Indices: 789518--789583 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
789508 TTAATATAAC
789518 TATTAAAATATTAAAAAATATTTAT
1 TATTAAAATATTAAAAAATATTTAT
** *
789543 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAATAT-TAAAAAATATTTAT
*
789569 TGTTAAAATTATTAA
1 TATTAAAA-TATTAA
789584 TATTAAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 11 0.33
26 19 0.58
27 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (25 bp):
TATTAAAATATTAAAAAATATTTAT
Found at i:789693 original size:15 final size:15
Alignment explanation
Indices: 789675--789805 Score: 83
Period size: 15 Copynumber: 8.6 Consensus size: 15
789665 TATTATTCTT
789675 TATATTATTTATTAA
1 TATATTATTTATTAA
* *
789690 TATATTA--TAATAT
1 TATATTATTTATTAA
*
789703 TAT-TTATTAATATAA
1 TATATTATTTAT-TAA
*
789718 TATTATTTGTTTATTAATA
1 TA-TA-TTATTTATT-A-A
789737 TACTATTATTTATTAA
1 TA-TATTATTTATTAA
* *
789753 -A-ATTAATATATTAG
1 TATATT-ATTTATTAA
*
789767 TATAATATTTATTAA
1 TATATTATTTATTAA
*
789782 TATATTATTTAGTAA
1 TATATTATTTATTAA
*
789797 TATAATATT
1 TATATTATT
789806 ATTTTTGAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 22
0.69 0.13 0.17
Matches are distributed among these distances:
12 3 0.03
13 10 0.11
14 8 0.09
15 41 0.47
16 4 0.05
17 2 0.02
18 15 0.17
19 5 0.06
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:789718 original size:18 final size:18
Alignment explanation
Indices: 789695--789870 Score: 113
Period size: 18 Copynumber: 9.8 Consensus size: 18
789685 ATTAATATAT
789695 TATAATATTATTTATTAA
1 TATAATATTATTTATTAA
789713 TATAATATTATTTGTTTATTAA
1 TATAATATTA----TTTATTAA
*
789735 TATACTATTATTTATT-A
1 TATAATATTATTTATTAA
* * *
789752 -A-AAT-TAATATATTAG
1 TATAATATTATTTATTAA
789767 TAT-A-A-TATTTATT-A
1 TATAATATTATTTATTAA
*
789781 -AT-ATATTATTTAGTAA
1 TATAATATTATTTATTAA
789797 TATAATATTATTT-TTGAAAATA
1 TATAATATTATTTATT----A-A
*
789819 TTATAATATTATTTATTGA
1 -TATAATATTATTTATTAA
*
789838 TTTAATATTATTTATTAA
1 TATAATATTATTTATTAA
*
789856 TTTAATATTATTTAT
1 TATAATATTATTTAT
789871 AAGTAAAATT
Statistics
Matches: 125, Mismatches: 13, Indels: 40
0.70 0.07 0.22
Matches are distributed among these distances:
13 3 0.02
14 8 0.06
15 15 0.12
16 4 0.03
17 4 0.03
18 56 0.45
19 1 0.01
21 1 0.01
22 18 0.14
23 13 0.10
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (18 bp):
TATAATATTATTTATTAA
Found at i:789725 original size:41 final size:41
Alignment explanation
Indices: 789676--789856 Score: 183
Period size: 41 Copynumber: 4.4 Consensus size: 41
789666 ATTATTCTTT
789676 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
1 ATATTATTTATTAATATATTATAATATTATTTATTAATATA
* * * * *
789717 ATATTATTTGTTTAT-TAATATACTATTATTTATTAAAATTA
1 ATATTATTTATTAATATATTATAATATTATTTATTAATA-TA
*
789758 ATA-TA-TTAGTATAATAT-TTATTAATATATTATTTAGTAATATA
1 ATATTATTTA-T-TAATATATTA-T-A-ATATTATTTATTAATATA
* * *
789801 ATATTATTT-TTGAAAATATTATAATATTATTTATTGATTTA
1 ATATTATTTATT-AATATATTATAATATTATTTATTAATATA
789842 ATATTATTTATTAAT
1 ATATTATTTATTAAT
789857 TTAATATTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 24
0.74 0.11 0.16
Matches are distributed among these distances:
39 2 0.02
40 23 0.21
41 49 0.44
42 6 0.05
43 12 0.11
44 18 0.16
45 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (41 bp):
ATATTATTTATTAATATATTATAATATTATTTATTAATATA
Found at i:789733 original size:22 final size:22
Alignment explanation
Indices: 789674--789863 Score: 121
Period size: 23 Copynumber: 8.8 Consensus size: 22
789664 TTATTATTCT
*
789674 TTATATTATTTATTAATATATTA
1 TTAT-TTATTTATTAATATAATA
*
789697 TAATATTATTTATTAATATAATA
1 TTAT-TTATTTATTAATATAATA
* *
789720 TTATTTGTTTATTAATATACTA
1 TTATTTATTTATTAATATAATA
*
789742 TTATTTA-TTA-AAAT-TAATA
1 TTATTTATTTATTAATATAATA
* *
789761 -TATTAGTATAATATTTAT-TAATA
1 TTATT--TAT-TTATTAATATAATA
*
789784 -TA-TTATTTAGTAATATAATA
1 TTATTTATTTATTAATATAATA
* * *
789804 TTATTT-TTGA-AAATATTATA
1 TTATTTATTTATTAATATAATA
* * *
789824 ATA-TTATTTATTGATTTAATA
1 TTATTTATTTATTAATATAATA
*
789845 TTATTTATTAATTTAATAT
1 TTATTTATTTA-TTAATAT
789864 TATTTATAAG
Statistics
Matches: 128, Mismatches: 27, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
18 4 0.03
19 11 0.09
20 26 0.20
21 16 0.12
22 33 0.26
23 38 0.30
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (22 bp):
TTATTTATTTATTAATATAATA
Found at i:789846 original size:11 final size:10
Alignment explanation
Indices: 789817--789869 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
789807 TTTTTGAAAA
789817 TATTATAATAT
1 TATT-TAATAT
789828 TATTT-AT-T
1 TATTTAATAT
*
789836 GATTTAATAT
1 TATTTAATAT
789846 TATTT-AT-T
1 TATTTAATAT
*
789854 AATTTAATAT
1 TATTTAATAT
789864 TATTTA
1 TATTTA
789870 TAAGTAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
8 10 0.29
9 8 0.24
10 12 0.35
11 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TATTTAATAT
Found at i:791883 original size:8 final size:8
Alignment explanation
Indices: 791867--791909 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
791857 ATTAATTTTT
*
791867 TATAATTA
1 TATATTTA
791875 TATATTTA
1 TATATTTA
*
791883 TATAATTA
1 TATATTTA
791891 TATATTTA
1 TATATTTA
791899 TATATTTA
1 TATATTTA
791907 TAT
1 TAT
791910 TTAAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATATTTA
Found at i:791888 original size:16 final size:16
Alignment explanation
Indices: 791867--791912 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
791857 ATTAATTTTT
791867 TATAATTATATATTTA
1 TATAATTATATATTTA
791883 TATAATTATATATTTA
1 TATAATTATATATTTA
791899 TAT-ATT-TATATTTA
1 TATAATTATATATTTA
791913 AAAAAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.27
15 3 0.10
16 19 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATAATTATATATTTA
Found at i:791890 original size:30 final size:30
Alignment explanation
Indices: 791854--791931 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
791844 GATATTATGT
*
791854 AAAATTAATTTTTTATA-ATTATATATTTAT
1 AAAATTAATTTTTTATATATT-TATATTTAA
* *
791884 ATAATT-ATATATTTATATATTTATATTTAA
1 AAAATTAAT-TTTTTATATATTTATATTTAA
* *
791914 AAAAATAATATTTTATAT
1 AAAATTAATTTTTTATAT
791932 TTAAAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
29 2 0.05
30 31 0.82
31 5 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
AAAATTAATTTTTTATATATTTATATTTAA
Found at i:791928 original size:22 final size:21
Alignment explanation
Indices: 791898--791950 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 21
791888 TTATATATTT
791898 ATATATTTATATTTAAAAAAATA
1 ATAT-TTTATATTT-AAAAAATA
791921 ATATTTTATATTTAAAAAATA
1 ATATTTTATATTTAAAAAATA
791942 ATATTTTAT
1 ATATTTTAT
791951 TAATTTGGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 17 0.57
22 9 0.30
23 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATTTTATATTTAAAAAATA
Found at i:793588 original size:53 final size:53
Alignment explanation
Indices: 793508--793610 Score: 197
Period size: 53 Copynumber: 1.9 Consensus size: 53
793498 CGCCAATCAT
793508 AATGCTAAAAATCTTTATTGAAATCCTCCATTATATCTAGCAAATTAAGCCAC
1 AATGCTAAAAATCTTTATTGAAATCCTCCATTATATCTAGCAAATTAAGCCAC
*
793561 AATGCTAAAAGTCTTTATTGAAATCCTCCATTATATCTAGCAAATTAAGC
1 AATGCTAAAAATCTTTATTGAAATCCTCCATTATATCTAGCAAATTAAGC
793611 AAATATCTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (53 bp):
AATGCTAAAAATCTTTATTGAAATCCTCCATTATATCTAGCAAATTAAGCCAC
Found at i:796403 original size:90 final size:90
Alignment explanation
Indices: 796222--796393 Score: 276
Period size: 90 Copynumber: 1.9 Consensus size: 90
796212 GAATTCAAAC
* *
796222 TTAAACTTTCCAGTGTAATATGGTATCAAATTTTGTAAGTGATCAATGCTGTGATACCTTTTCTC
1 TTAAACTTTCCAGTGTAATATGGTATCAAATTTTGTAAGTGATAAATGCCGTGATACCTTTTCTC
796287 TTTACTGCTATAAGATTACATTTTT
66 TTTACTGCTATAAGATTACATTTTT
*
796312 TTAAACTTTCCAGTGTAATAT-GTATCAAATTTCATG-AAGTGATAAATGCCGTGATACTTTTTC
1 TTAAACTTTCCAGTGTAATATGGTATCAAATTT--TGTAAGTGATAAATGCCGTGATACCTTTTC
*
796375 TCTTTACTGCTGTAAGATT
64 TCTTTACTGCTATAAGATT
796394 TTGTTTTTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 11 0.14
90 63 0.83
91 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (90 bp):
TTAAACTTTCCAGTGTAATATGGTATCAAATTTTGTAAGTGATAAATGCCGTGATACCTTTTCTC
TTTACTGCTATAAGATTACATTTTT
Found at i:800942 original size:11 final size:11
Alignment explanation
Indices: 800926--800950 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
800916 AGGTAATGCA
800926 TTAATCATTGC
1 TTAATCATTGC
800937 TTAATCATTGC
1 TTAATCATTGC
800948 TTA
1 TTA
800951 CTTTTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (11 bp):
TTAATCATTGC
Found at i:803419 original size:20 final size:20
Alignment explanation
Indices: 803394--803458 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
803384 CCATTAAATA
803394 AAAAACTAAATAAAAATTAT
1 AAAAACTAAATAAAAATTAT
*
803414 AAAAACCAAATATAAAA-TAT
1 AAAAACTAAATA-AAAATTAT
* *
803434 AAAAA-TATAATAAATATAAT
1 AAAAACTA-AATAAAAATTAT
803454 AAAAA
1 AAAAA
803459 AATATATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 4 0.11
20 30 0.79
21 4 0.11
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAACTAAATAAAAATTAT
Found at i:803452 original size:24 final size:24
Alignment explanation
Indices: 803421--803498 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 24
803411 TATAAAAACC
803421 AAATATAAAATATAAAAATATAAT
1 AAATATAAAATATAAAAATATAAT
*
803445 AAATAT--AATAAAAAAATAT-AT
1 AAATATAAAATATAAAAATATAAT
803466 -AAT-TAATAATAATAAAAAGTAATAA-
1 AAATATAA-AAT-ATAAAAA-T-ATAAT
803491 AAATATAA
1 AAATATAA
803499 GAAAAAAGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 2 0.05
22 15 0.35
23 6 0.14
24 7 0.16
25 2 0.05
26 4 0.09
27 3 0.07
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (24 bp):
AAATATAAAATATAAAAATATAAT
Found at i:803459 original size:22 final size:22
Alignment explanation
Indices: 803429--803505 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
803419 CCAAATATAA
*
803429 AATATAAAAATATAATAAATAT
1 AATAAAAAAATATAATAAATAT
*
803451 AATAAAAAAATAT-ATAATTAAT
1 AATAAAAAAATATAATAAAT-AT
803473 AATAATAAAAAGTAATAA-AAATAT
1 AATAA-AAAAA-T-ATAATAAATAT
*
803497 AAGAAAAAA
1 AATAAAAAA
803506 GCTTGACCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 5 0.11
22 19 0.41
23 9 0.20
24 7 0.15
25 5 0.11
26 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (22 bp):
AATAAAAAAATATAATAAATAT
Found at i:803466 original size:39 final size:38
Alignment explanation
Indices: 803389--803493 Score: 94
Period size: 40 Copynumber: 2.8 Consensus size: 38
803379 GTTGGCCATT
*
803389 AAATAAAAAACTAAATAAAAATTATAAAAACCAAATATA
1 AAATAAAAAACTAAATAAAAATAATAAAAA-CAAATATA
*
803428 AAATATAAAAA-TATAATAAATATAAT-AAAA-AAATATA
1 AAATA-AAAAACTA-AATAAAAATAATAAAAACAAATATA
* * *
803465 TAATTAATAA-T-AATAAAAAGTAATAAAAA
1 AAATAAAAAACTAAATAAAAA-TAATAAAAA
803494 TATAAGAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
34 7 0.12
35 4 0.07
36 9 0.16
37 10 0.18
39 11 0.20
40 15 0.27
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (38 bp):
AAATAAAAAACTAAATAAAAATAATAAAAACAAATATA
Found at i:804379 original size:16 final size:18
Alignment explanation
Indices: 804360--804396 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
804350 AATAAAAACG
*
804360 AAAGTAGTA-GAAAA-AA
1 AAAGTAGGAGGAAAAGAA
804376 AAAGTAGGAGGAAAAGAA
1 AAAGTAGGAGGAAAAGAA
804394 AAA
1 AAA
804397 CTCAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (18 bp):
AAAGTAGGAGGAAAAGAA
Found at i:805213 original size:3 final size:3
Alignment explanation
Indices: 805200--805247 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
805190 TGACAGAATG
805200 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
805246 AA
1 AA
805248 AGATTTAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:805748 original size:13 final size:13
Alignment explanation
Indices: 805730--805821 Score: 60
Period size: 12 Copynumber: 7.8 Consensus size: 13
805720 AAATTATTAG
805730 ATAATAA-AAGTAA
1 ATAATAATAAGT-A
*
805743 ATAATAATAAATA
1 ATAATAATAAGTA
805756 ATAATAATAAGT-
1 ATAATAATAAGTA
* *
805768 TTAAT-GT-AG-A
1 ATAATAATAAGTA
* *
805778 A-GAGAA-AAGT-
1 ATAATAATAAGTA
805788 ATAATAATAA-TA
1 ATAATAATAAGTA
805800 ATAATAATAA-TA
1 ATAATAATAAGTA
805812 ATAATAATAA
1 ATAATAATAA
805822 TAAAAAAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 17
0.69 0.11 0.19
Matches are distributed among these distances:
9 1 0.02
10 5 0.08
11 5 0.08
12 28 0.46
13 19 0.31
14 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (13 bp):
ATAATAATAAGTA
Found at i:805796 original size:3 final size:3
Alignment explanation
Indices: 805788--805824 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
805778 AGAGAAAAGT
805788 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
805825 AAAAAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:805890 original size:3 final size:3
Alignment explanation
Indices: 805882--805923 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
805872 GTTTAGAAGT
805882 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
805924 ATTTTAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:805950 original size:96 final size:94
Alignment explanation
Indices: 805784--805971 Score: 315
Period size: 96 Copynumber: 2.0 Consensus size: 94
805774 TAGAAGAGAA
805784 AAGTATAATAATAATAATAATAATAATAATAATAATAATAAAAAAAAATTTAAAAAAACTATAAA
1 AAGTATAATAATAATAATAATAATAATAATAATAATAATAAAAAAAAATTTAAAAAAACTATAAA
805849 AAATGAGTTTATTGTAAAAGTCTGTTTAG
66 AAATGAGTTTATTGTAAAAGTCTGTTTAG
* * *
805878 AAGT-TAATAATAATAATAATAATAATAATAATAATAATAATAATAAATTTTAAAAAAAAATTAT
1 AAGTATAATAATAATAATAATAATAATAATAATAATAATAA-AAAAAAATTT--AAAAAAACTAT
805942 AAAAAATGAGTTTATTGTAAAAGTCTGTTT
63 AAAAAATGAGTTTATTGTAAAAGTCTGTTT
805972 GGATGTTGGA
Statistics
Matches: 88, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
93 36 0.41
94 12 0.14
96 40 0.45
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (94 bp):
AAGTATAATAATAATAATAATAATAATAATAATAATAATAAAAAAAAATTTAAAAAAACTATAAA
AAATGAGTTTATTGTAAAAGTCTGTTTAG
Found at i:806070 original size:19 final size:19
Alignment explanation
Indices: 806046--806108 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
806036 AACCCTAAAA
**
806046 TGAAACTCTAAACATTAGG
1 TGAAACTCTAAACCCTAGG
*
806065 TGAAACTCGT-AACCCTAAG
1 TGAAACTC-TAAACCCTAGG
*
806084 TAAAACTCTAAACCCTAGG
1 TGAAACTCTAAACCCTAGG
806103 TGAAAC
1 TGAAAC
806109 CTGAAACCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 1 0.03
19 34 0.94
20 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (19 bp):
TGAAACTCTAAACCCTAGG
Found at i:806115 original size:19 final size:19
Alignment explanation
Indices: 806061--806116 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
806051 CTCTAAACAT
*
806061 TAGGTGAAA-CTCGTAACCC
1 TAGGTGAAACCT-GAAACCC
* *
806080 TAAGTAAAACTCT-AAACCC
1 TAGGTGAAAC-CTGAAACCC
806099 TAGGTGAAACCTGAAACC
1 TAGGTGAAACCTGAAACC
806117 TTAAATGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 2 0.07
19 25 0.86
21 2 0.07
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (19 bp):
TAGGTGAAACCTGAAACCC
Found at i:806133 original size:38 final size:38
Alignment explanation
Indices: 806035--806133 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
806025 CCTTAAATTT
*
806035 AAACCCTAAAATGAAACTCTAAACATTAGGTGAAACTCG
1 AAACCCT-AAATGAAACTCTAAACACTAGGTGAAACTCG
* * * *
806074 TAACCCTAAGTAAAACTCTAAACCCTAGGTGAAAC-CTG
1 AAACCCTAAATGAAACTCTAAACACTAGGTGAAACTC-G
* *
806112 AAACCTTAAATGAAACCCTAAA
1 AAACCCTAAATGAAACTCTAAA
806134 TCTTAAGCAA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 1 0.02
38 42 0.86
39 6 0.12
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.20
Consensus pattern (38 bp):
AAACCCTAAATGAAACTCTAAACACTAGGTGAAACTCG
Found at i:815298 original size:74 final size:75
Alignment explanation
Indices: 815155--815303 Score: 183
Period size: 74 Copynumber: 2.0 Consensus size: 75
815145 TGAATCTGGC
* * * * *
815155 CAAATGTACGTTCGATGTTAAATTGAAAAAATTGCTAGGGTTCTTAGTCAATGAAAAAGGCATTG
1 CAAATGTACATTCAATGCTAAATTGAAAAAATTGCTAAGGTTCTTAGTCAATGAAAAAGGCATTA
815220 AAGTA-ACCT
66 AAGTAGACCT
* * * * ** *
815229 CAAATGTACATTCAATGCTAAATTGGAAAAATTGCTAAGGTTTTTAGTTAGTGAAAGGGGTATTA
1 CAAATGTACATTCAATGCTAAATTGAAAAAATTGCTAAGGTTCTTAGTCAATGAAAAAGGCATTA
815294 AAGTAGACCT
66 AAGTAGACCT
815304 TAATAAGATT
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
74 58 0.94
75 4 0.06
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.31
Consensus pattern (75 bp):
CAAATGTACATTCAATGCTAAATTGAAAAAATTGCTAAGGTTCTTAGTCAATGAAAAAGGCATTA
AAGTAGACCT
Found at i:817731 original size:18 final size:17
Alignment explanation
Indices: 817710--817774 Score: 62
Period size: 17 Copynumber: 3.7 Consensus size: 17
817700 AATTTTGCTT
*
817710 AAAAAAGAAAAAGGGAA
1 AAAAAAGAAAAAGAGAA
*
817727 AAAAAAGTCAAAAGAGAAA
1 AAAAAAG-AAAAAGAG-AA
817746 AAAAAAGAAAAA-A-AA
1 AAAAAAGAAAAAGAGAA
817761 AAGAAAGAGAAAAA
1 AA-AAA-AGAAAAA
817775 AATGAAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.10
16 3 0.07
17 15 0.37
18 10 0.24
19 9 0.22
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (17 bp):
AAAAAAGAAAAAGAGAA
Found at i:817781 original size:26 final size:27
Alignment explanation
Indices: 817737--817799 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
817727 AAAAAAGTCA
817737 AAAGAGAAAAAAAAAGAAAAA-AAAAAG
1 AAAGAG-AAAAAAAAGAAAAACAAAAAG
* *
817764 AAAGAGAAAAAAATGAAAAACAAAAGG
1 AAAGAGAAAAAAAAGAAAAACAAAAAG
817791 AAA-AGAAAA
1 AAAGAGAAAA
817800 GGATTCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 19 0.58
27 14 0.42
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (27 bp):
AAAGAGAAAAAAAAGAAAAACAAAAAG
Found at i:817783 original size:27 final size:27
Alignment explanation
Indices: 817737--817799 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
817727 AAAAAAGTCA
817737 AAAGAGAAAAAAAAAGAAAAAAAAAAG
1 AAAGAGAAAAAAAAAGAAAAAAAAAAG
* *
817764 AAAGAG-AAAAAAATGAAAAACAAAAGG
1 AAAGAGAAAAAAAAAGAAAAA-AAAAAG
817791 AAA-AGAAAA
1 AAAGAGAAAA
817800 GGATTCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 15 0.47
27 17 0.53
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (27 bp):
AAAGAGAAAAAAAAAGAAAAAAAAAAG
Found at i:819881 original size:7 final size:7
Alignment explanation
Indices: 819871--819911 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
819861 ACAAAAAACT
819871 AAATATA
1 AAATATA
819878 AAATATA
1 AAATATA
**
819885 AAA-ACC
1 AAATATA
819891 AAATATA
1 AAATATA
819898 AAATATA
1 AAATATA
819905 AAA-ATA
1 AAATATA
819911 A
1 A
819912 TAAATACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 8 0.28
7 21 0.72
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (7 bp):
AAATATA
Found at i:819889 original size:20 final size:20
Alignment explanation
Indices: 819864--819908 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
819854 CCATTAAACA
*
819864 AAAAACTAAATATAAAATAT
1 AAAAACCAAATATAAAATAT
819884 AAAAACCAAATATAAAATAT
1 AAAAACCAAATATAAAATAT
819904 AAAAA
1 AAAAA
819909 TAATAAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAACCAAATATAAAATAT
Found at i:819922 original size:19 final size:18
Alignment explanation
Indices: 819899--819958 Score: 72
Period size: 19 Copynumber: 3.4 Consensus size: 18
819889 CCAAATATAA
819899 AATATAAAAATAATAAAT
1 AATATAAAAATAATAAAT
819917 ACATATAAATAATAAT-AAT
1 A-ATATAAA-AATAATAAAT
*
819936 AACA-AAAAATAATAAA-
1 AATATAAAAATAATAAAT
819952 AATATAA
1 AATATAA
819959 GGAAAAAGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 9 0.25
17 7 0.19
18 3 0.08
19 11 0.31
20 6 0.17
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
AATATAAAAATAATAAAT
Found at i:819937 original size:13 final size:12
Alignment explanation
Indices: 819895--819955 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
819885 AAAACCAAAT
*
819895 ATAAAATATAAAA
1 ATAAAA-ATAATA
819908 ATAATAAATACAT-
1 ATAA-AAATA-ATA
819921 ATAAATAATAATA
1 ATAAA-AATAATA
*
819934 ATAACAAAAAATA
1 ATAA-AAATAATA
819947 ATAAAAATA
1 ATAAAAATA
819956 TAAGGAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
12 7 0.17
13 29 0.73
14 4 0.10
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:821734 original size:3 final size:3
Alignment explanation
Indices: 821726--821751 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
821716 AAAATAAATA
821726 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
821752 AATAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:822357 original size:16 final size:16
Alignment explanation
Indices: 822335--822457 Score: 89
Period size: 15 Copynumber: 8.0 Consensus size: 16
822325 GGAATTATTA
*
822335 AATAATACAAATAAAT
1 AATAATAAAAATAAAT
*
822351 TATAATAAAAATAAAT
1 AATAATAAAAATAAAT
822367 AATAAT---AATAAAT
1 AATAATAAAAATAAAT
* ***
822380 -TTAATGGAAAAGGGAAT
1 AATAAT--AAAAATAAAT
*
822397 AATAATAATAAT-AAT
1 AATAATAAAAATAAAT
*
822412 AATAATAATAAT-AAT
1 AATAATAAAAATAAAT
*
822427 AATAATAATAAT-AAT
1 AATAATAAAAATAAAT
*
822442 AATAATAATAATAAAT
1 AATAATAAAAATAAAT
822458 TTTTAGAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
12 4 0.04
13 7 0.08
15 45 0.51
16 25 0.28
17 4 0.04
18 4 0.04
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (16 bp):
AATAATAAAAATAAAT
Found at i:822402 original size:3 final size:3
Alignment explanation
Indices: 822394--822455 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
822384 TGGAAAAGGG
822394 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
822442 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
822456 ATTTTTAGAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:822578 original size:26 final size:26
Alignment explanation
Indices: 822541--822614 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
822531 TAAATTTTTG
822541 AAACCCT-AAGTGAAACCTTAAAAAA
1 AAACCCTAAAGTGAAACCTTAAAAAA
* *
822566 AAACCTTAAAGTGAAA-CTCTAAAAGA
1 AAACCCTAAAGTGAAACCT-TAAAAAA
* *
822592 AAACCCTGAAGTGAAACCATAAA
1 AAACCCTAAAGTGAAACCTTAAA
822615 CCCTAGGTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 8 0.20
26 32 0.78
27 1 0.02
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (26 bp):
AAACCCTAAAGTGAAACCTTAAAAAA
Found at i:822626 original size:19 final size:18
Alignment explanation
Indices: 822592--822677 Score: 91
Period size: 19 Copynumber: 4.5 Consensus size: 18
822582 CTCTAAAAGA
822592 AAACCCTGAAGTGAAACCAT
1 AAACCCT-AAGTGAAACC-T
* **
822612 AAACCCTAGGTGAAATTT
1 AAACCCTAAGTGAAACCT
*
822630 GTAACCCTAAGTGAAACCCT
1 -AAACCCTAAGTGAAA-CCT
822650 AAACCCTAAGTGAAATCCT
1 AAACCCTAAGTGAAA-CCT
822669 AAACCCTAA
1 AAACCCTAA
822678 ATTCCTTAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
18 1 0.02
19 46 0.84
20 8 0.15
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.20
Consensus pattern (18 bp):
AAACCCTAAGTGAAACCT
Found at i:822674 original size:38 final size:38
Alignment explanation
Indices: 822592--822677 Score: 111
Period size: 38 Copynumber: 2.2 Consensus size: 38
822582 CTCTAAAAGA
* *
822592 AAACCCTGAAGTGAAACCATAAACCCTAGGTGAAATTTG
1 AAACCCT-AAGTGAAACCATAAACCCTAAGTGAAATCTG
* *
822631 TAACCCTAAGTGAAACCCTAAACCCTAAGTGAAATCCT-
1 AAACCCTAAGTGAAACCATAAACCCTAAGTGAAAT-CTG
822669 AAACCCTAA
1 AAACCCTAA
822678 ATTCCTTAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 34 0.83
39 7 0.17
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.20
Consensus pattern (38 bp):
AAACCCTAAGTGAAACCATAAACCCTAAGTGAAATCTG
Found at i:827549 original size:16 final size:16
Alignment explanation
Indices: 827528--827560 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
827518 AAACATAGTC
827528 TTTGTATGTTTAATTT
1 TTTGTATGTTTAATTT
827544 TTTGTATGTTTAATTT
1 TTTGTATGTTTAATTT
827560 T
1 T
827561 ATTTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.70
Consensus pattern (16 bp):
TTTGTATGTTTAATTT
Found at i:827609 original size:73 final size:73
Alignment explanation
Indices: 827471--827678 Score: 235
Period size: 74 Copynumber: 3.0 Consensus size: 73
827461 AAGCATAGTC
*
827471 TTTGTATCTTTAATTTTTTTAATTAAAGACCACATTTCTAGTTTAAGAAACATAGTCTTTGTATG
1 TTTGTATCTTTAATTTTTTTAATTAAAGACCACATTTCTAGTTTAAAAAACATAGTCTTTGTATG
827536 TTTAATTT
66 TTTAATTT
* * **
827544 TTTGTATGTTTAATTTTATTTTAATTAAAGACCATA-TTCTAGTTTAAAAAATGTAGTCTTT-TA
1 TTTGTATCTTTAA-TTT-TTTTAATTAAAGACCACATTTCTAGTTTAAAAAACATAGTCTTTGTA
827607 TGTTTAA-TT
64 TGTTTAATTT
* * *
827616 TTT-T-TC--------TTTCAATTAAAGACCACATTTCTAGTTTAAAAGACATAGTCTTTGTACG
1 TTTGTATCTTTAATTTTTTTAATTAAAGACCACATTTCTAGTTTAAAAAACATAGTCTTTGTATG
827671 TTTAATTT
66 TTTAATTT
827679 GTTTTTCAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
60 16 0.14
61 22 0.19
62 8 0.07
63 2 0.02
70 1 0.01
71 1 0.01
72 5 0.04
73 21 0.18
74 25 0.21
75 17 0.14
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (73 bp):
TTTGTATCTTTAATTTTTTTAATTAAAGACCACATTTCTAGTTTAAAAAACATAGTCTTTGTATG
TTTAATTT
Found at i:827688 original size:60 final size:59
Alignment explanation
Indices: 827544--827785 Score: 278
Period size: 60 Copynumber: 4.1 Consensus size: 59
827534 TGTTTAATTT
* * **
827544 TTTGTATGTTTAATTTTATTTT-AATTAAAGACCATA-TTCTAGTTTAAAAAATGTAGTC
1 TTTGTATGTTTAATTTT-TTTTCAATTAAAGACCACATTTCTAGTTTAAAAGACATAGTC
827602 TTT-TATGTTTAATTTTTTTCTTTCAATTAAAGACCACATTTCTAGTTTAAAAGACATAGTC
1 TTTGTATGTTTAA--TTTTT-TTTCAATTAAAGACCACATTTCTAGTTTAAAAGACATAGTC
* * * *
827663 TTTGTACGTTTAATTTGTTTTTCAATTAAAGACCACGTTTCAAGTTTAAGAA-ACATACTC
1 TTTGTATGTTTAATTT-TTTTTCAATTAAAGACCACATTTCTAGTTTAA-AAGACATAGTC
* * *
827723 TTTGTATGTTTAATTTTTTGTTCAATTAAAGACCACGTTTCTACTTT-AAAGAACATAATC
1 TTTGTATGTTTAATTTTTT-TTCAATTAAAGACCACATTTCTAGTTTAAAAG-ACATAGTC
827783 TTT
1 TTT
827786 TAAAAATGAA
Statistics
Matches: 161, Mismatches: 12, Indels: 20
0.83 0.06 0.10
Matches are distributed among these distances:
57 9 0.06
58 6 0.04
59 11 0.07
60 101 0.63
61 26 0.16
62 8 0.05
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (59 bp):
TTTGTATGTTTAATTTTTTTTCAATTAAAGACCACATTTCTAGTTTAAAAGACATAGTC
Found at i:836480 original size:20 final size:20
Alignment explanation
Indices: 836439--836482 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
836429 TCTCGTCGAT
* *
836439 AATTTATCAGTAATGATCAA
1 AATTTATCAATAATAATCAA
836459 AATTTCATCAATAATAAT-AA
1 AATTT-ATCAATAATAATCAA
836479 AATT
1 AATT
836483 CCATGGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (20 bp):
AATTTATCAATAATAATCAA
Found at i:836723 original size:11 final size:11
Alignment explanation
Indices: 836651--836728 Score: 54
Period size: 11 Copynumber: 7.0 Consensus size: 11
836641 AAATCTAGAT
*
836651 AACATCCATCA
1 AACATCCATAA
*
836662 AACATCCATCA
1 AACATCCATAA
* *
836673 AACGT-C-TAT
1 AACATCCATAA
*
836682 AGCATCCATAA
1 AACATCCATAA
836693 AACA-CCATAA
1 AACATCCATAA
836703 GATATCCATCCATAA
1 -A-A--CATCCATAA
836718 AACATCCATAA
1 AACATCCATAA
836729 CATCTATCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
9 4 0.08
10 8 0.15
11 30 0.57
12 1 0.02
13 1 0.02
14 3 0.06
15 6 0.11
ACGTcount: A:0.46, C:0.29, G:0.04, T:0.21
Consensus pattern (11 bp):
AACATCCATAA
Found at i:839660 original size:27 final size:27
Alignment explanation
Indices: 839630--839685 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
839620 TCTAGAAGGA
839630 TAGCTTGTATAGGAAACTTGATGTACT
1 TAGCTTGTATAGGAAACTTGATGTACT
*
839657 TAGCTTGTATAGGAAGCTTGATGTACT
1 TAGCTTGTATAGGAAACTTGATGTACT
839684 TA
1 TA
839686 TGAAGCTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (27 bp):
TAGCTTGTATAGGAAACTTGATGTACT
Found at i:845016 original size:80 final size:80
Alignment explanation
Indices: 844813--845017 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
844803 TTTTTTGTTG
* * * * * *
844813 TTTTTTT-TTTTTGCAACATGCAGATCAAATGTTTTTCTAATGACGCACATGTAAGCGTAAGTGA
1 TTTTTTTGTTTTTGCAACATGCAAATCAAATGTCTTTCTTATGATGCACATATAAGCGCAAGTGA
*
844877 TGCAAATGTGAAAAC
66 TGCAAATGTAAAAAC
* * * *
844892 TCTTTTTGTTTTT-CTAACATGTAAATCAAAAGTCTTTCTTATGATGCACATATAAGTGCAAGTG
1 TTTTTTTGTTTTTGC-AACATGCAAATCAAATGTCTTTCTTATGATGCACATATAAGCGCAAGTG
**
844956 ATGTGAATG-AAAAGAC
65 ATGCAAATGTAAAA-AC
844972 TTTTTTTGTTTTTGCAACATGCAAATCAAATGTCTTTCTTATGATG
1 TTTTTTTGTTTTTGCAACATGCAAATCAAATGTCTTTCTTATGATG
845018 TAATTGATGC
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 10 0.09
80 95 0.90
81 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (80 bp):
TTTTTTTGTTTTTGCAACATGCAAATCAAATGTCTTTCTTATGATGCACATATAAGCGCAAGTGA
TGCAAATGTAAAAAC
Found at i:846365 original size:131 final size:129
Alignment explanation
Indices: 846218--846547 Score: 342
Period size: 131 Copynumber: 2.5 Consensus size: 129
846208 GGGATTGAAG
* * * * * *
846218 CCTTATTCATTTTTTGCCTCAGACTCTAATATTTGAGGTGCATGTCTTTTCTCTTTTTTTTTTTT
1 CCTTATTCACTTTTTGCCTCAGACTCTCATCTTTGAGATGAATGTCTTTTTTCTTTTTTTTTTTT
* * * *
846283 TAT-TTATATAAAAAATATTCATTCTTGAATTCTTTCTCTCTTTTTTACTTGGGATTCTATCTAA
66 TATCTT-T-TAAAAAACATTCATTCTTGAATTCTATCT-TCTTTTTTACTTGGGATTCTAACCAA
846347 AA
128 AA
* * *
846349 CCTTATTCACTTTTTG-CTCCAAACTCTCATCTCTAAGATGAATGTCTTTTTTCCTTTGTTTTGT
1 CCTTATTCACTTTTTGCCT-CAGACTCTCATCTTTGAGATGAATGTCTTTTTT-CTTT-TTTT-T
* * * *
846413 TTTTT-TCTTTTGAAAAACATTCATTCTTGAATTCTATCTTTTTTTTTACTTGGGATTTTAACCG
62 TTTTTATCTTTTAAAAAACATTCATTCTTGAATTCTATCTTCTTTTTTACTTGGGATTCTAACCA
*
846477 AAG
127 AAA
** * * * * *
846480 CCTTATTCACTTTTCACCTCGGACTTTCATCTTCGAGATGTATGTCTTTCTTTCTTTGTTTTTTT
1 CCTTATTCACTTTTTGCCTCAGACTCTCATCTTTGAGATGAATGTCTTT-TTTCTTTTTTTTTTT
846545 TTA
65 TTA
846548 ATGAAGAAAT
Statistics
Matches: 163, Mismatches: 28, Indels: 17
0.78 0.13 0.08
Matches are distributed among these distances:
129 6 0.04
130 5 0.03
131 103 0.63
132 35 0.21
133 6 0.04
134 8 0.05
ACGTcount: A:0.20, C:0.18, G:0.09, T:0.53
Consensus pattern (129 bp):
CCTTATTCACTTTTTGCCTCAGACTCTCATCTTTGAGATGAATGTCTTTTTTCTTTTTTTTTTTT
TATCTTTTAAAAAACATTCATTCTTGAATTCTATCTTCTTTTTTACTTGGGATTCTAACCAAAA
Found at i:850899 original size:4 final size:4
Alignment explanation
Indices: 850890--850922 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
850880 TAATAATGTT
850890 AATA AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA AATA A
850923 TCAAGCAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Done.