Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168050.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37071
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:532 original size:25 final size:26
Alignment explanation
Indices: 498--549 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
488 GTTGACTTAG
498 GCATACGGAGTTCATTC-CAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
*
523 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
549 G
1 G
550 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:2151 original size:26 final size:26
Alignment explanation
Indices: 2121--2173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2111 GTTGACTTAG
*
2121 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
2147 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2173 G
1 G
2174 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3569 original size:742 final size:742
Alignment explanation
Indices: 2110--3632 Score: 2351
Period size: 740 Copynumber: 2.1 Consensus size: 742
2100 TCCTTTCATG
* * * * *
2110 GGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACGGATTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCACTCCCAGTCTAAGA
**
2175 TCGGACCAGACCGAGGGTTACGACAGCACATGCTATGCTCAGGCATGCAACTGGTGCCGTATTTT
66 TCGGACCAGACCGAGGGTTACGACAGCACATGCTATGCTCAGGCATGCAACTGGTGCCACATTTT
** * * **
2240 TCTTCGTCGGGGCACATCGTCGGAGCATCACTGGAGAACCTGACCGACGGCATTGGGGTTCCAAC
131 TCTTCGTCGGGGCACATCACCGAAGAATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCAAC
* * *
2305 GATCGGGGGGGCTGGACGGGTGTTCGCACATGATGTGCAATGCGTCTGGTACTTGGCCCTTATAT
196 GATCGAGGGGGCCGGACGGGTGTGCGCACATGATGTGCAATGCGTCTGGTACTTGGCCCTTATAT
* * **
2370 TGGCCCCTTATCCCTCATCAAAACTCGAGAACTCACACCCTTTAAAGAGCATTTGAGATTTTACA
261 TGGCCCCCTATCCCTCATCAAAACTCGAGAACCCACACCCCATAAAGAGCATTTGAGATTTTACA
2435 GGTTTTGCTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
326 GGTTTTGCTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
2500 ATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTGTGCATGCCAACAAAAATACAAGGATCACG
391 ATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTCTGCATGCCAAAAAAAATACAAGGATCACG
* * * *
2565 TCTACCAAGTTTGGGGCCAAAATTACTTCCGAAAAAATTTTAAAAAATCTCGAACCGAAAAAGTT
456 TCTACCAAGTTTGGAGCCAAAAATACTTCCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAGTT
* *
2630 TCAAAAATCGTGAAAATTAGAAAACGAGTTGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
521 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
2695 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
586 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
2760 AACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCC
651 AACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCC
*
2825 GCCCGCCCGCCC-C-GTTCGTTTCGTC
716 GCCCGCCCGCCCGCAGCTCGTTTCGTC
* *
2850 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAATTCACTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCACTCCCAGTCTAAGA
* * * * ** *
2915 TCTGACCAGACCGAGGGTTGCGGCAGCACATGCTGA-GCTCGGGCATG-TGCTGGTGCCACGTTT
66 TCGGACCAGACCGAGGGTTACGACAGCACATGCT-ATGCTCAGGCATGCAACTGGTGCCACATTT
*
2978 TTCTTCGTCGGGGCACCATCACCGAAGAATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCT
130 TTCTTCGTCGGGGCA-CATCACCGAAGAATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCA
** ** * *
3043 GTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
194 ACGATCGAGGGGGCCGGACGGGTGTGCGCACATGATGTGCAATGCGT-CTGGTACTTGGCCCTTA
*
3108 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATTTGAGATTT
258 TATTGGCCCCCTATCCCTCATCAAAACTCGAGAACCCACA-CCCCATAAAGAGCATTTGAGATTT
3173 TACAGG-TTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
322 TACAGGTTTTGCTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
3236 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAAAATACAAGGA
387 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TATTTTCTGCATGCCAAAAAAAATACAAGGA
* * * *
3301 TCACGTGTACCATGTTTGGAGCCAAAAATCCTT-CTAAAAAATTTTTAAAAAATCCCAAACCGAA
451 TCACGTCTACCAAGTTTGGAGCCAAAAATACTTCCGAAAAAA-TTTTAAAAAATCCCAAACCG-A
* * * *
3365 AAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAGGGC
514 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGC
*
3430 TTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGC-TGGCAGAAATATGAAGA
579 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGA
* *
3494 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACG
643 TGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTCTCTAGCCGACG
*
3559 TAGTGCCCGCCCGCCCGCCCGTCAGCTCGTTTCGTT
708 TAGTGCCCGCCCGCCCGCCCG-CAGCTCGTTTCGTC
3595 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3633 ATCAGATCTG
Statistics
Matches: 709, Mismatches: 63, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
739 26 0.04
740 271 0.38
741 135 0.19
742 229 0.32
744 1 0.00
745 47 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (742 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCACTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTACGACAGCACATGCTATGCTCAGGCATGCAACTGGTGCCACATTTT
TCTTCGTCGGGGCACATCACCGAAGAATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCAAC
GATCGAGGGGGCCGGACGGGTGTGCGCACATGATGTGCAATGCGTCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAAACTCGAGAACCCACACCCCATAAAGAGCATTTGAGATTTTACA
GGTTTTGCTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTCTGCATGCCAAAAAAAATACAAGGATCACG
TCTACCAAGTTTGGAGCCAAAAATACTTCCGAAAAAATTTTAAAAAATCCCAAACCGAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCC
GCCCGCCCGCCCGCAGCTCGTTTCGTC
Found at i:3782 original size:26 final size:26
Alignment explanation
Indices: 3743--3798 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3733 TGGGTTGACT
*
3743 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
* *
3769 TAAGCATACAAAGTTCATTCCTAGTC
1 TAAGCATACAAAGTTCATTCCCAATC
3795 TAAG
1 TAAG
3799 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:4683 original size:26 final size:26
Alignment explanation
Indices: 4647--4697 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4637 TGACTTAGGA
*
4647 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
4673 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
4698 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:5009 original size:899 final size:897
Alignment explanation
Indices: 2840--14913 Score: 15079
Period size: 898 Copynumber: 13.5 Consensus size: 897
2830 CCCGCCCCGT
* * * * * *
2840 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAATTCACTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
2905 CAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * ** *
2970 CCACGTTTTTCTTCGTCGGGGCACCATCACCGAAGAATCACCAGAGAACCTGACCGACGGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
3035 GGGTTCCTGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
196 GGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3100 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCATAAAGAGCATT
260 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
3165 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
3230 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAAAAAAAATA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * *
3295 CAAGGATCACGTGTACCATGTTTGGAGCCAAAAATCCTTCTAAAAAATTTTTAAAAAATCCCAAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAATCTCGAA
* * * *
3360 CCGAAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * **
3425 AGGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCTGGCAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
3490 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
3555 GACGTAGTGCCCGCCCGCCCGCCCGTCAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
714 GGCGTAGTGCCCGCCCGCCCG-CC-TC-GCT--TTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
* * * * * *
3620 TTCCCAGTCTAAGATCAGATCTGACTAAGGGTTACGGCAGTAGGATCAGCAGGACGTAGAGGGGG
774 TTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * **
3685 ACCCGGCCGATCCCCAGCTTGCACAT-CCTACCC-CT------CT--G-G---G--CG-
839 ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * **
3727 --GTTGCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** *
3790 TAGTCTAAGATCGGACCGGACCGAGCATTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *** * *
3855 CCGCATTTTTCTTTACCGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGACATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * *
3920 GGGTTCCGGCAATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTT
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
3985 GCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTG
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
4050 GAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * **
4115 GGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATACCAAGTAAAATAC
391 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** *
4180 AAGGATCATGTCTAAAAAGTTTGGGGCTAAAACTCCATTCAAAAAAATTTTAAAAAATCTCGAAC
456 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTTAAAAAATCTCGAAC
4245 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** *
4310 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATTA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
4375 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
4440 GCGTAGTGCCCGCTCGCCCGCCTGCGCTTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCC
715 GCGTAGTGCCCGCCCGCCCGCCT-CGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
* * * * *
4505 AGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAAGATCGGCAGCACACAGAGGGGGACCCG
779 AGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * *
4570 ACCGATCCCCGGCTTGCGCATCCCGCCCCTGTGGCAGGTTGAGCGCCCGCACGC
844 ACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
4624 TCATTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * * * *
4689 CAGTCTAAGATCGAACCGGATAGAGGGTTGCAAG-AACACATTCTGGGCTCGGGCAGGTGCTGGT
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
4753 GCCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGACATT
130 GCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* ** * *
4818 AGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATCTGCGATGGGTGATGGTACTT
195 GGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
4883 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAATAGCATT
260 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
4948 TGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
5013 TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * ** * *
5078 CAAGGATCATGTGTACCAAGTTTGGAACCAAAACTCCTTTCAAAAAAATTTTAAAACATCTTGAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTTAAAAAATCTCGAA
** * * * * *
5143 CCACAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTTGTCCTGCCATGAAACATCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * ** *
5208 CAGGCTGAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATGTG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
5273 AAGATG-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
5337 GACGTAGTGCCCTCCCATGCACC-CGCTCG--TTTCGTCGGTTGGCTTGGGCATACGAAGTTCAT
714 GGCGTAGTGCCCGCCC--GC-CCGC-CTCGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
* * * * *
5399 TCCCAATCTAAGATCAGATCAAACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGA
775 TCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGA
** * * *
5464 CCCGGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGC
840 CCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
**
5522 TCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
5587 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCAAGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** *
5652 CCACATTTTTCTTCGCCAGGGCACCATCATCGGAGCATTG-CAGGAGAACCTGACC-AGCGG-AT
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGA-CGGCAT
* * * * *
5714 TAGGGTTCCGACGATCGGGGGGGTCGAGGGGGTGTGCGCACATGATGTACGATGGGTGATGGTAC
194 TGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
5779 TTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTAAAGAGTA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* ** * *
5844 TTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACAGGGTCACTTTTTTTA
323 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
5909 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
388 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
5974 TACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAA-TTTACAAAATCTC
453 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-C-AAAAAAATTTTAAAAAATCTC
* *
6038 TAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
516 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
6103 ATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAAT
581 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
6168 ATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
646 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
6233 GCCGACGTAGT----GCCCGCCTG-CTCG-TTTT-GTCGGTTGGCTTAGGCATACGAAGTTCATT
711 GCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
* * * * * ** *
6291 CCTAGTCTAAGATTAGATCAGACAGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGGGGGGC
776 CCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* * * **
6356 CC-AGTCGATCCCC-GACTTACGCATCCCGCCCCTCTGGCTGATTGAGCGCCCGCACGC
841 CCGA-CCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
6413 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
6478 CAGTCTAAGATCAGATCGGACCGAAGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGTTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * * *
6543 CCGCATTTTTCTTCGTCGGGGCACCATTACCGAAGCATC-ACAGGAGAACCTGACCGGCGGCATT
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATT
* * * * * *
6607 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGGGTACAGGATATGCAATGGGTGCTGGTACTT
195 GGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
6672 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
260 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
6737 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
6802 TGCTCACAAAATCTTGTACGCTTCAAATTTTTAGCTGAAGTTTTTTATGCATGCCAACAAAAATA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
6867 CAAGGATCACGTATACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCTCGAA
* * * *
6931 CCGTAAAAAGTTACGAAAATCATGAAAAATA-AAAGAGGAGTTGTCTTGCCATGAAACTTCACGT
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
6995 GACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
*
7060 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
7125 CGACGTGGTGCCCGCCCGCCCGCCCATCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTC
713 CGGCGTAGTGCCCGCCCGCCCG-CC-T-CGCT--TTTCGTCGGTTGGCTTAGGCATACGAAGTTC
* * * * * * *
7190 ATTCCCAGTCTAACATTAGATCAGACCGAGGGTTACAGCAGTAGGATCGACAGCACGCAGAGAGG
773 ATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGG
* * * * * * * * * *
7255 GACCTGGCAGATTCCCAGTTTGCACATCTCACCTCTCTTGCCGGCTGAGCGCCCGCACGC
838 GACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
7315 TTGTTTCGTGTGTTAACTTAGGCTTACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** *
7380 CAATCTAAGATCGGACCGGACCGAGGGTTACGAAAGCACATGCTAGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
*** * ** * * * *
7445 CTGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGAAGAACCTGACTGGCGGCATCG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * * * *
7510 GGGTTTCGGTGGTC-GGGGGGTCAGGGGGTGTGCGCACAGGATGTGCTATGGGTGCTGGTACTTG
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
7574 GCCGTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
7639 CAGATTTTACAGGTTTGGTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAAT
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
7704 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAACATAC
391 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
7769 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAATATCCCGAAC
456 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAATCTCGAAC
* * * *
7834 CATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGGCATGAAACTTCACGTGA
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ** * *
7899 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACATAGAATTACGA
585 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* *
7964 AGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
650 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
8029 GCGTAGT----GCTCGCCCG-CTCG--TTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCA
715 GCGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
* * * *
8087 GTCTATGATCCA-ATCGGA-TCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCC
780 GTCTAAGAT-CAGATCAGACT-GAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * * *
8150 GGTCGATCCCC-GACTTCCGCAACCCACCCCTCTAGCCGGCTAAGCGCCCGCACGC
843 GACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
8205 TTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
8270 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
8335 CCACATTTTTGTTCGTCGGGGCACCAT---C---G---C--CGGAGAACTTGATCGACGACATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * * *
8389 GGGTTCCGACGATCGGGGGGGCCAGGTGGTGTGCACACATAATGTGCGATGGGTGCTGGTTCTTG
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
8454 GCCCTCATATTGGCCCCCTATCCCTCATCAAA-CTATGAGAACTCACACCCTCTTAAAGGGCATT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCCCCTTAAAGAGCATT
* *
8518 TAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
** * *
8583 TGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTT-TGCATCCCAACAAAACTA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
8647 CAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCTCGAA
* * * *
8712 CCGCAAAAAGTTTC--AAATCGTGAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
8775 AACGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGCAG-AATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
8839 AAGATGTGCCTAAACCCACCTACCACCCTAATCGATCCATGGCGTGTGCATCCCGTCTCTCTGGC
649 AAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
8904 AGGCGTAGTGCCC-CCACGCTCGCC-CGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
713 CGGCGTAGTGCCCGCC-CGCCCGCCTCG--CTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
* * * * ** * * *
8967 TCCCAGTCTAAGATCTGAT-TGAACTGAGGGTTACAGTGGCAGGATCGGCAGCACGTAGAGTGGG
775 TCCCAGTCTAAGATCAGATCAG-ACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * * * ** * *
9031 ACCTGACCAATCGCCGGCTTGTGCATCCCGTACCTCTGGCCGGTTGAGTGCCCGCACGC
839 ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
9090 TCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
9155 CAGACTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATATGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * * * * * *
9220 CCTTATTTTTCTTAGTCGGGGCATCATCGTCGGAGCATCGTCGGAGAACTTGACCGGCCGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* *
9285 GGGTTCCGGCGATC------G--GAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** *
9342 GCCCTTATATTGGCCCCCTATCCCTAATCAATTCTCAAGAACTCACACCCCCTTAAAGAGCATTT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * *
9407 GAGATTTTATAGGTTTGCTGCCAGTAGACATTAAAATGTCTGAAATGTGGACACCTTTTTCAAAT
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
9472 GGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATGC
391 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
9537 AAGGATCACGTCTGCCAAG-TTGAGAGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCCGAA
456 AAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCTCGAA
** *
9601 CCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
9666 AAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * *
9731 AAGATATGCCTAAACCCACCGACCACCCTATTGATCCACGGCTTGCGCATCCCATCTCTCTGGCC
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
9796 GGTGTAGTGCCCGCCCACCCGTCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
714 GGCGTAGTGCCCGCCCGCCCG-C--CTCGCT--TTTCGTCGGTTGGCTTAGGCATACGAAGTTCA
* * * * * * * * *
9861 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGGTAGCACACAGAGTGGG
774 TTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGG
* * * * * * *
9926 ACCCGACCAATCGCCGGCTTTCGCATCCCGTCCCTCTGGCCGGCTAAGCGCCCGTACGC
839 ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
9985 TCGTTTCGTAGGTTGAC-T-----TA--G-G--CA-T---A--C---G---A---AGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
10024 CAGCCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGAATGTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * * *
10089 CCACATTTTGCTTCGTCGGGGCACCATCGCATGAGCATCGCCGGAGAACCTGACCGGCCGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* *
10154 GGGTTTCGGCGAT---------CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** *
10210 G-CCTTATATTGG-CCCCTAT-CCTCATCAAACCTTAAGAACTCACCCCCCCTTAAAGAGCATTT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * *
10272 GAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTTTCT-CAATGGGGACACTTTTTTTAAAT
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* **
10336 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATTCCAGGAAAAATAC
391 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * ** * *
10400 AAGAATCACATCTACCAAGTTTGGGGCCAAAACTCCCCCCGAAAAAATTCTAAAAAATCTCGAAC
456 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCAAAAAAATTTTAAAAAATCTCGAAC
* *
10465 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAAACTTCACGTG
520 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTG
* *
10530 AAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
10595 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT
649 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
10660 AGCGTAGTGCCCGCCCG-CCG-TTCG--TTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTCC
714 GGCGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCC
* * * * *
10720 CAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGTAGGATCGACATCAACGCAGAGGTGGACC
778 CAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGC-ACGCAGAGGGGGACC
* * * *
10785 TGACCGATCCCCGGCTTGCACAT-CCG-CCCTCTGGCCGGCTGAACGCCCGCACGC
842 CGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
10839 TCATTTTGT-GGTTGACTTAGGCAAATGGAGTTCATT-CCAGTATAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
10902 CAATCTTAAGATCGAACTGGACCAACGGTTGCGGTAGCACATGCTGGGCTCGGGCATTTGCTGGT
66 CAGTC-TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
10967 GCCATATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGAACCTGTCCGATGGCATT
130 GCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
11021 GGGGTTTCGTCGGTC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
195 GGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
11085 TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCAT
259 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
11150 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGTGGACACTTTTTTCAA
324 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
11215 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAAT
389 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * * * *
11280 ACAAGTATCACATCTGCCAACTTTGGGGACAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGA
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCTCGA
* *
11345 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTACACGT
518 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
11410 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
583 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* *
11475 GAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGC
648 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
11540 CAGCGTAATGCCCGCCCGCCC-ACTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGTAGTTCATT
713 CGGCGTAGTGCCCGCCCGCCCGCCTCGCT--TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
** ** * ** * * *
11604 CCCAGTCTAAGATTTGATCAGACCAAGGGTTTCGGCAACAAGATCGACAGTACGCAGAGGGGGAC
776 CCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * *
11669 CAGTCCGATCCCCAGCTTGCGCATTCCGCCCTTCTGGCCGACTGAACGCCCGCACGC
841 CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
** ** * * *
11726 TTATTTCGTTCGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCG
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
11791 TAGTCTAAGATTGGATCAGACCGCA-GGTTGCGGCAGCACATGCTAGGCTCGGGCAAGTGCTCGT
66 CAGTCTAAGATCGGACCGGACCG-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
11855 GCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAAACTGACCGGCGGCATT
130 GCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * *
11920 AGGGTTCCGGCGATCGAGGGGGCC-GAGGG-GTGCGTAGATGATGTGCGATGGGTGCTGGTACTT
195 GGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
11983 GGCCCTTATATT-GTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATT
260 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
12047 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGCGACACTTTTTTCAAA
325 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
12112 TTGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAAT
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAAT
* *
12177 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCAAAAAATTTTTAAAAAATC-CTG
454 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTTAAAAAATCTC-G
* * * * *
12241 AACCGTAAAAAGATTGAAAAATCGTGAAAAAAAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
517 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
12306 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
582 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
** *
12371 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAAGCATCCCGTCTCACTGG
647 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * * * *
12436 CCGGCACAGTGCCCACCCACCCG-CTAG-TTTT-GTCGGTTGCCTTAGGCATATGGAGTTCATTC
712 CCGGCGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTC
** * * * * *
12498 CCAGTCTAAGATTGGACCATATTGAGGGTTGCGGCAGTAGGATCGGTAGCACACAGAGGGGGACC
777 CCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACC
*** * * *
12563 CGGTTGATCCCCAGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGTGCCCGCGCGC
842 CGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
12619 TCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
12684 CAGTCTAATATCGGGCTGGATCGAGGGTTGCGGCAGCACATACTGGGCTCAGGCATTTGCTGGTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * ** * ** **
12749 TCGCATTTTTCTTCATCGAGTCACCATCATCTGAGCATCACCGGAGAACCTGACCCCCGGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * *
12814 GGGTTCCGGCGGTCGAGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
196 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
12879 GCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
12944 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGACACTTTTTTCAAA
326 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAA
* * * *
13009 TTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATACCAACAAAAACA
390 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
13074 CAAGGATCACATCTACCAAGTTTGGTGCTAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCGAA
455 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCTCGAA
* * *
13139 CCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTG
519 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
13204 AAGGCTTAAGGGACCGTTGTATGAATTTACAGGCCATAAAAATGACATTGGCACACAAAAATATG
584 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * *
13269 AAGATTTGCCTAAACCCA-CAATCCACCCTATCGATCCACGGCTTGCGCATCCCATCTGTCTGGT
649 AAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
13333 CGACGTAGTGCCCGACCACCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
713 CGGCGTAGTGCCCG----CCCGCCCG-CC-T-CGCT--TTTCGTCGGTTGGCTTAGGCATACGAA
* * * * * ** *
13398 GTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACCCAGA
769 GTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGA
* ** * * * * * * *
13463 GAGGGACCCGGTCGATCCTCTGCTTGCTCATCCCACCCCACTGGCCGGCTGAGCGCCCGTACAC
834 GGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
13527 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ***
13592 AAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAATAGCAC
66 CAGTCTAAG-AT-C-G-G---A----C---C---G----GA-C----CGAGGGTTGCGGCAGCAC
* * *
13657 ATGCTGGGCTCGGGCAAGTTCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC
105 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * * * * * *
13722 GTCGAAGAACCTGGCCGGCAGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGTGTGCGCATA
170 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACA
**
13787 TGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GA
235 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGA
* * *
13851 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCATTAGCCATTAAAGTG
299 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
13916 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAACTAAA
364 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * ** * *
13981 TTTTTTTGTGGATGCCAACAAACATACAAGGATCATGTCTAGTAAGTTTGGGGCGAAAAATCCTT
429 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T
** * *
14046 TTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
493 TCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
14111 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAA
558 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
14176 AAATTGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCAC
623 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
14241 GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG-CTCG--TTTCGTCGGTT
688 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTT
* ** *
14303 GGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGA-CCGATCCAAGGATTGCGGCAGTA
753 GGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCAGA-CTGAGGGTTGCGGCAGTA
* * * * * * *
14366 GGATCGGTAGAACGTAGAAGGGTACCCGACCGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCG
816 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
*
14431 GCTGAGCG-CCGCGCGC
881 GCTGAGCGCCCGCACGC
* ** *
14447 TCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** * * *
14512 CAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGATGCTGGGCTCAGGCATGTGCT-CTG
66 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
14576 CAACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGATGGCATTG
131 CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
14641 GGGTTCTGCCGATCGGGCGGGCCAGGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
196 GGGTTCCGGCGATCGGGGGGGCC----G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
14706 ACTTGGCCCTTATATTGGCCTCCTATCCCTCA-CAAAAACCTCGAGAACTCACACCCCCTTAAAG
256 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATC--AAACCTCGAGAACTCACACCCCCTTAAAG
* *
14770 AGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTTT
319 AGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
14835 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
383 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
14900 AAAAATAAAAGGAT
448 AAAAATACAAGGAT
14914 TAGCAGCACG
Statistics
Matches: 9764, Mismatches: 1182, Indels: 469
0.86 0.10 0.04
Matches are distributed among these distances:
853 7 0.00
854 33 0.00
855 76 0.01
856 30 0.00
859 3 0.00
861 1 0.00
862 1 0.00
863 120 0.01
864 210 0.02
865 76 0.01
866 7 0.00
867 12 0.00
868 73 0.01
869 135 0.01
870 1 0.00
872 2 0.00
873 1 0.00
875 2 0.00
876 33 0.00
877 181 0.02
878 25 0.00
879 196 0.02
880 389 0.04
881 226 0.02
882 136 0.01
883 4 0.00
884 477 0.05
885 478 0.05
886 76 0.01
887 34 0.00
888 293 0.03
889 125 0.01
890 487 0.05
891 691 0.07
892 67 0.01
893 383 0.04
894 55 0.01
895 204 0.02
896 535 0.05
897 410 0.04
898 840 0.09
899 718 0.07
900 147 0.02
901 258 0.03
902 508 0.05
903 6 0.00
904 1 0.00
905 1 0.00
906 1 0.00
907 3 0.00
908 199 0.02
909 3 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
919 3 0.00
920 75 0.01
921 116 0.01
925 3 0.00
926 1 0.00
927 1 0.00
929 10 0.00
933 314 0.03
934 253 0.03
935 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCTCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCGCCCGCCCGCCTCGCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
TCTAAGATCAGATCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGAC
CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
Found at i:6471 original size:26 final size:26
Alignment explanation
Indices: 6434--6486 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6424 GTTGACTTAG
6434 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
6460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6486 G
1 G
6487 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:7375 original size:26 final size:26
Alignment explanation
Indices: 7339--7388 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
7329 AACTTAGGCT
* *
7339 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
7365 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
7389 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:8262 original size:26 final size:26
Alignment explanation
Indices: 8226--8278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8216 GTTGACTTAG
* *
8226 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8252 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8278 G
1 G
8279 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:9141 original size:26 final size:26
Alignment explanation
Indices: 9111--9163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9101 GTTGACTTAG
* *
9111 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGACTAA
*
9137 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCACAGACTAA
9163 G
1 G
9164 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGACTAA
Found at i:11776 original size:26 final size:26
Alignment explanation
Indices: 11747--11799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11737 GTTGACTTAG
11747 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
* *
11773 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
11799 G
1 G
11800 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12676 original size:26 final size:26
Alignment explanation
Indices: 12640--12691 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630 TTTGACTTAG
12640 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12692 TATCGGGCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13233 original size:896 final size:892
Alignment explanation
Indices: 10006--14913 Score: 6106
Period size: 896 Copynumber: 5.5 Consensus size: 892
9996 GTTGACTTAG
* * *
10006 GCATACGAAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
10071 CTTGGGAATGTGCTGGTGCCACATTTTGCTTCGTCGGGGCACCATCG-CATGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCA-GAGCATCGCCGGAG
* * *
10135 AACCTGACCGGCCGCATTGGGGTTTC-G-G--CGA-----TCGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCACACATGATGTG
** *
10191 CGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCTAT-CCTCATCAAACCTTAAGAACTCACC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
10254 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTTTCT-CAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
10318 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
* ** * * **
10382 GCATTCCAGGAAAAATACAAGAATCACATCTACCAAGTTTGGGGCCAAAACTCCCCCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-GCCTTCCGAAAAAA
* * * *
10447 TTCTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
10512 CCATGAAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 CCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
10577 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
10642 CATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCC-GCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
* * * * * *
10706 ACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGTAGGATCGACATCAA
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGATAGC-A
* * ** * * *
10771 CGCAGAGGTGGACCTGACCGATCCCCGGCTTGCACAT-CCG-CCCTCTGGCCGGCTGAACGCCCG
777 CGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * ** *
10834 CACGCTCATTTTGTGGTTGACTTAGGCAAATGGAGTTCATT-CCAGTATAA
842 CACGCTCATTTCGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
10884 GCATACGGAGTTCATTCCCAATCTTAAGATCGAACTGGACCAACGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
10949 GCTCGGGCATTTGCTGGTGCCATATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * * * * *
11003 AACCTGTCCGATGGCATTGGGGTTTCGTCGGTCG-GGGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTC-GGGGGGTGTGCACACATGATGT
* * *
11067 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
11132 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
11197 TGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
* * * *
11262 GTGCATGCCAAAAAAAATACAAGTATCACATCTGCCAACTTTGGGGACAAAAGTCCTTCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAG-CCTTCCGAAAA
*
11327 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCC
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
11392 TGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
11457 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTAC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
11522 GCATCCCGTCTCTCTGGCCAGCGTAATGCCCGCCCGCCCACTCGCTCGTTTTGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTA
* ** * ** * ** * *
11587 GGCATACGTAGTTCATTCCCAGTCTAAGATTTGATCAGACCAAGGGTTTCGGCAACAAGATCGAC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGAT
* * * * * *
11652 AGTACGCAGAGGGGGA-CCAGTCCGATCCCCAGCTTGCGCATTCCGCCCTTCTGGCCGACTGAAC
773 AGCACGCAGAGGGGGACCCGGT-CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
11716 GCCCGCACGCTTATTTCGTTCGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
837 GCCCGCACGCTCATTTCG-TGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * * *
11773 GCATACGGAGTTCATTCGTAGTCTAAGATTGGA-TCAGACCGCA-GGTTGCGGCAGCACATGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCG-AGGGTTGCGGCAGCACATGCTG
* * * * *
11836 GGCTCGGGCAAGTGCTCGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGA
* * * * * ** *
11901 GAAACTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGG-CCGAGGG-GTGCGTAGATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCACACATGATGT
*
11964 GCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
12029 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
12094 GGCGACACTTTTTTCAAATTGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTT
* *
12159 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTC-AAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAG-CCTTCCGAAAA
* * * * * *
12223 AATTTTTAAAAAATCCTGAACCGTAAAAAGATTGAAAAATCGTGAAAAAAAGAAAACAAGTCGTC
452 AA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
12288 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
12353 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
12418 AGCATCCCGTCTCACTGGCCGGCACAGTGCCCACCCACCCGCTAGTTTTGTCGGTTGCCTTAGGC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGC
* ** * * *
12483 ATATGGAGTTCATTCCCAGTCTAAGATTGGACCATATTGAGGGTTGCGGCAGTAGGATCGGTAGC
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGATAGC
* * * *
12548 ACACAGAGGGGGACCCGGTTGATCCCCAGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGTGCCC
776 ACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
12613 GCGCGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 GCACGCTCATTTCGTGG-TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
12666 GCATACGGAGTTCATTCCCAGTCTAATATCGGGCTGGATCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * *
12731 CTCAGGCATTTGCTGGTGTCGCATTTTTCTTCATCGAGTCACCATCATCTGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGA
** *
12796 ACCTGACCCCCGGCATTGGGGTTCCGGCGGTCGAGGGGGTCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCACACATGATGTGC
12861 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACA
12926 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-
*
12991 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
* * * * *
13056 TGCATACCAACAAAAACACAAGGATCACATCTACCAAGTTTGGTGCTAAAACGCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-GCCTTCCGAAAAA
* * *
13121 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
13186 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAGGCCATAAAAATGACA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
13251 TTGGCACACAAAAATATGAAGATTTGCCTAAACCCA-CAATCCACCCTATCGATCCACGGCTTGC
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGC
* * * * * *
13315 GCATCCCATCTGTCTGGTCGACGTAGTGCCCGACCACCCGCCCGCCCGTCCGCTCGTTTCATCGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCACCCG--C-T-CG-T--TTT-GTCGG
* * * *
13380 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCA
700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTA
* * * * * * *
13445 GGATCGATAGCACCCAGAGAGGGACCCGGTCGATCCTCTGCTTGCTCATCCCACCCCACTGGCCG
765 GGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
13510 GCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAATCTAA
830 GCTGAGCGCCCGCACGCTCATTTCGT-GGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
*
13574 GCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--CT--G----GA-C----
*** * *
13639 CGAGGGTTGCAATAGCACATGCTGGGCTCGGGCAAGTTCTGGTGCCACATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * * * *
13704 CACCATCGCCAGAGCATCGTCGAAGAACCTGGCCGGCAGCATTGGGGTTCCGACGATCGAGGGGG
105 CACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGG
* * **
13769 TCGGGGGGTGTGCGCATATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 TCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT
* *
13834 CCCTCATCAAACCAT-GAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
234 CCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
13898 CCATTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * ** **
13963 TTCGAGTTTTTAACTAAATTTTTTTGTGGATGCCAACAAACATACAAGGATCATGTCTAGTAAGT
363 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGT
* * **
14028 TTGGGGCGAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
428 TTGGGGC-CAAAAGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
14093 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
14158 TGAATTTACAAGCCATAAAAATTGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
14223 ACCTCCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
* * **
14288 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GATCCAA
687 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGA
* * * * * * ** *
14352 GGATTGCGGCAGTAGGATCGGTAGAACGTAGAAGGGTACCCGACCGATCCCCAACTTGCGCATCC
751 GGGTTGCGGCAGTAGGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCC
* * *
14417 TGCCCCTCTGGCCGGCTGAGCG-CCGCGCGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTC
816 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT-GGTTGACTTAGGCATACAGAGTTC
14481 ATTCCCAGTCTAA
880 ATTCCCAGTCTAA
* ** * * ** *
14494 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
14559 CTCAGGCATGTGCT-CTGCAACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGA
* * * * * *
14623 ACCTAACCGATGGCATTGGGGTTCTGCCGATCG-GGCGGGCCAGGGGTGGGGGTGTGCGCACATG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGG-GGGTC----G-GGGGGTGTGCACACATG
14687 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCA-CAAAAACCTCGAG
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATC--AAACCTCGAG
*
14751 AACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATG
252 AACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
14816 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
* *
14881 TTTTTTTATGCATGCCAAAAAAAATAAAAGGAT
381 TTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
14914 TAGCAGCACG
Statistics
Matches: 3492, Mismatches: 427, Indels: 200
0.85 0.10 0.05
Matches are distributed among these distances:
868 33 0.01
870 1 0.00
872 2 0.00
873 1 0.00
876 3 0.00
877 43 0.01
878 31 0.01
879 78 0.02
880 76 0.02
881 200 0.06
882 128 0.04
883 1 0.00
884 1 0.00
885 37 0.01
886 78 0.02
887 33 0.01
888 90 0.03
889 28 0.01
891 2 0.00
892 5 0.00
893 391 0.11
894 43 0.01
895 52 0.01
896 493 0.14
897 369 0.11
898 68 0.02
899 69 0.02
900 139 0.04
902 1 0.00
903 1 0.00
904 1 0.00
905 2 0.00
907 5 0.00
908 197 0.06
909 4 0.00
910 1 0.00
911 1 0.00
912 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
919 2 0.00
920 74 0.02
921 116 0.03
922 2 0.00
923 2 0.00
924 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
929 10 0.00
933 312 0.09
934 251 0.07
935 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGATAGCACGCA
GAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCATTTCGTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:13585 original size:26 final size:26
Alignment explanation
Indices: 13548--13626 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
13538 GTTGACTTAG
*
13548 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13574 GCATACGGAGTTCATT-CCAAGTCTAA
1 GCATACGGAGTTCATTCCCAA-TCTAA
*
13600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
13626 G
1 G
13627 ATCAGATCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.08
26 42 0.86
27 3 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14504 original size:26 final size:26
Alignment explanation
Indices: 14468--14520 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14458 GTTGACTTAG
14468 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
14494 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
14520 G
1 G
14521 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:15043 original size:26 final size:26
Alignment explanation
Indices: 15013--15065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15003 GTTGGCTTAG
*
15013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15039 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15065 G
1 G
15066 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15413 original size:539 final size:540
Alignment explanation
Indices: 14377--15449 Score: 1568
Period size: 539 Copynumber: 2.0 Consensus size: 540
14367 GATCGGTAGA
* *
14377 ACGTAGAAGGGTACCCGACCGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCG
1 ACGTAGAAGGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCG
* * * *
14442 CGCGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
66 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
14507 ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGATGCTGGGCTCAGGCATGTGC
131 ATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGC
* * * ** *
14572 TCTGCAACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGATGGC
196 TCTACAACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTAACCGATGGC
* *
14637 ATTGGGGTTCTGCCGATCGGGCGGGCCAGGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGC
261 ATTGGGGTTCCGCCGATCGGGCGGGCC---GGTGGGGGTGTGCGCACATGATGTACGATGGGTGC
*
14702 TGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCACAAAAACCTCGAGAACTCACACCCCCTTA
323 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAC-AAAACCTCGAGAACTCACACCCCCTTA
* *
14767 AAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACAC
387 AAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAATGTCTGAAATGGGGACAC
*
14832 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCC
452 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
14897 AAAAAAAATAAAAGGATTAGCAGC
517 AAAAAAAATAAAAGGATTAGCAGC
* ** *
14921 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCC
1 ACGTAGAAGGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CC
* * * *
14986 GCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
65 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
15051 CATTCCCAATCTAAGATCGGACCGGACCGAA-GGTTGC-AGCAGCACATGTTGGGCTCAGGCATG
130 CATTCCCAATCTAAGATCGGACCAGACC-AAGGGTTACGA-CAGCACATGCTGGGCTCAGGCATG
* ** * * *
15114 TGCTGGTACTGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGATAACCTGATC-A
193 TGCT-CTACAACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTAACCGA
* *
15178 TTGGCGTTGGGGTTCCGGCGATCGGG-GAGGCC-G-GGGGGTGTGCGCACATGATGTACGATGGG
257 -TGGCATTGGGGTTCCGCCGATCGGGCG-GGCCGGTGGGGGTGTGCGCACATGATGTACGATGGG
*
15240 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACGTCGAGAACTCACACCCCC
320 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAAACCTCGAGAACTCACACCCCC
* *
15304 TTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTTCCAGTACCCATTAAAGTGTCTGAAATGGGGA
384 TTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAATGTCTGAAATGGGGA
* *
15368 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCAT
449 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* *
15433 GCCAACAAAAATGAAAG
514 GCCAAAAAAAATAAAAG
15450 AATCACGTCT
Statistics
Matches: 475, Mismatches: 47, Indels: 19
0.88 0.09 0.04
Matches are distributed among these distances:
539 127 0.27
540 32 0.07
541 66 0.14
542 2 0.00
544 57 0.12
545 117 0.25
546 74 0.16
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (540 bp):
ACGTAGAAGGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCG
CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGC
TCTACAACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTAACCGATGGC
ATTGGGGTTCCGCCGATCGGGCGGGCCGGTGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCACAAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAATGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
AAAATAAAAGGATTAGCAGC
Found at i:15790 original size:26 final size:26
Alignment explanation
Indices: 15753--15803 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15743 GTCGGTTCAG
* *
15753 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15779 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
15804 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18027 original size:878 final size:875
Alignment explanation
Indices: 15039--18270 Score: 4250
Period size: 887 Copynumber: 3.7 Consensus size: 875
15029 CCCAGTCTAA
* * * *
15039 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* ** ** * * *
15104 CTCA-GGCATGTGCTGGTACTGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAT
66 CT-AGGGCATGTGCTGGTTCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACTGGAG
* *
15168 AACCTGATC-ATTGGCGTTGGGGTTCCGGCGATC-GGGGAGGCCGGGGGGTGTGCGCACATGATG
130 AACCTGATCGA-CGGCATTGGGGTTCCGGCGATCAGGGG-GGCCGGGGGGTGTGCGCACATGATG
* * *
15231 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
* * *
15296 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTACCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
*
15361 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15426 TGTGCATGCCAACAAAAATGA-AAGAATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTGAA
388 TGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
15490 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-TGTGAAAAATAGAAAACGAGTCA
452 AAAATTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCA
15554 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15619 GGCATTGGTAGGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15684 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCGCCCGCCCGATCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGG-
*
15749 TCAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTATGATCGGACC
709 T------T---G-G--C--T--TAG-----GCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * *
15814 GAACTGAGGGTGTGGCAGTAG--GATCGAAAGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTT
753 GGACTGAGGGT-T-GCTGTAGCAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * * * *** *
15877 GCGCGTCCCGCCCCTCCGACCGGCTGAGTGCCCGCACTCTCGTTTCACAGTTTGACTTAG
816 GCGCATTCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * ** ** *
15937 GTATACGGAGTTCATTTCCAGTCTATGATCATACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* * * * * * *
16002 CTTGGGCATGAGCTGCTGCCTCATTTTTCCTCGTCGGGGCACC--C-TC---G--T--C-GGAGA
66 CTAGGGCATGTGCTGGTTCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACTGGAGA
* * *
16056 ACCTGACCGACGGCATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGATCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
16121 GATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTAATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACA
16186 CCCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
*
16250 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
16315 GCTTGCCAACAAAAATTCAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAA
* * * * *
16380 ATTTTAAAAAATCCTGAAGCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAA-CCTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTT
16445 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16510 TTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
16575 CATCCCATCTCTCTAGCCGGCG-AGGTGCCTGCCCGTCCGCCCACCTGCTCGTTTCGTCGATTGG
649 CATCCCGTCTCTCTAGTCGACGTA-GTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * *
16639 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT-ATGGTAGCAGGA
713 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCT-GTAGCA-GA
* * * *
16703 TCAGCAGCACGCAGAGGGGGACTCGACTGATCCCCAGCTTGCGCA-TCTTGCCCCTCTGGCCGAC
776 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTC-TGCCCCTCTGGCCGAC
* * *
16767 TGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAG
840 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
16803 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAACTGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* * * * *
16868 CTTGGGCATGTGCTGGTGT-CACGTTTTTCTTCACCGGGGCACCATCGTCGGAGTATCA-TCGAA
66 CTAGGGCATGTGCTGGT-TCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACT-GGA
* * * *
16931 GAACCTGATCGACGGTATTGGGGTTCCGGTGATCAGTGGGGCCGGGGGGTGTGCACACATGATGT
129 GAACCTGATCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
16996 GTGATGGATGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
* * *
17061 CACCCCCATAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
* *
17126 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGCATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17191 GTGCA-GCCAACAAAAATACGAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** * * *
17255 AATTTTAAAAAATCCCGAACCTCAAAAAGTTTTGAAAATCTTAAAAAATAGAAAACGAGTCGTGT
454 AATTTTAAAAAATCCCGAACCT-AAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCT
* * * *
17320 CGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGGCATAAAAATGAC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
17385 ATTGGCACACAGAAATATGAAGATGTGCCGAAACTCACCTAGCACCCTATCGATCCATGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17450 GTATCCCGTCTCTCTAGTCGTCGTAGTGCCCACCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * * *
17515 CTTAGGCAAACGAAGTTAATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCTGTAGCAAGAT
713 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTGTAGC-AGAT
*
17580 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG-GCATTCTGCCCCTCTGGCCGACCG
777 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGCCGACTG
17644 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
842 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17678 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGCTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
* * *
17743 CTAGGGCATGTGCTGGTTCCACACTTTTCTTCATCGGGGCACGATCGTCGGAGCATCACTGCAGA
66 CTAGGGCATGTGCTGGTTCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACTGGAGA
* * * * *
17808 ACCTGAACGACGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGGCGTGTGCGCACATGATC
131 ACCTGATCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCC--GGGGG-GTGTGCGCACATGATG
* *
17873 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
*
17938 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
* **
18003 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
18068 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TCGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* * * *
18132 AAAATTTAAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCAT
* * * *
18197 CTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCGATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
18262 GCATTGGCA
581 GCATTGGCA
18271 TGCAAAGGGG
Statistics
Matches: 2043, Mismatches: 251, Indels: 99
0.85 0.10 0.04
Matches are distributed among these distances:
863 4 0.00
864 1 0.00
865 43 0.02
866 163 0.08
868 1 0.00
869 2 0.00
870 2 0.00
872 2 0.00
874 3 0.00
875 197 0.10
876 321 0.16
877 189 0.09
878 318 0.16
879 171 0.08
880 2 0.00
886 166 0.08
887 359 0.18
888 7 0.00
890 1 0.00
892 1 0.00
895 1 0.00
896 1 0.00
898 88 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
CTAGGGCATGTGCTGGTTCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACTGGAGA
ACCTGATCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCCCGAACCTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
AGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCTGTAGCAGATCGGC
AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGCCGACTGAGTG
CCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:18398 original size:26 final size:26
Alignment explanation
Indices: 18362--18414 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
18352 GTTGACTTAG
18362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18388 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18414 G
1 G
18415 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20870 original size:26 final size:26
Alignment explanation
Indices: 20834--20886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20824 GTTGACTTAG
20834 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20860 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20886 G
1 G
20887 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21744 original size:26 final size:26
Alignment explanation
Indices: 21714--21766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21704 GTTGACTTAG
21714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
21740 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21766 G
1 G
21767 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22247 original size:890 final size:887
Alignment explanation
Indices: 19961--23046 Score: 4294
Period size: 890 Copynumber: 3.5 Consensus size: 887
19951 GTTGGCTTAG
* * *
19961 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
** *
20026 CTCGAGCC-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
66 CTC-AGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
20090 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTTGTGCACACAGGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGG-GGCCGGGGGGGTGTGCGCACATGATGT
* *
20155 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * * *
20220 CACCCCTTTAAACAACATTTGAGATTTTACAGGTTTGCTACTAGTAGCCTTTAAAGTGTCAGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
20285 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
* * * *
20350 GTTCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGCG-GCCAAAACTCCTTCCGAA
388 GTGCATGCCAACAAAAA-TACAAGGATCACTTTTACCAAGTTTG-GATCCAAAACTCCTTCCGAA
* ** ** * *
20413 AACATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
** * * *
20478 TTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
516 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
* * *
20543 GCATTGGCAGGAAGAAATAT-AAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GCATTGGCACGTAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCT
* *
20607 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTTGTTTCATCGGTTGGC
645 TGC-AATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCT--C--GTTTCATCGGTTGGC
* *
20672 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AAAGTTGCGGCAGCAGGATT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGAGTTGCGGCAGCAGGATT
* * * *
20736 GGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTACGCATCAC-ACCCCTCTAGCTGGCTG
767 GACAGCACGCAG-AGGGGACCCG-TCGATCCCC-GCTTGCGCATC-CTACCCCTCTGGCCGGCTG
* *
20800 AGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
828 AGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
20860 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
20925 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTACCGGAGCATCGTCGGAGA
66 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
20990 ACCTGACCGACGGCATTGGGTTTCCGGCGAT--------C-GGGGGGTGTACGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
21046 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
21111 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAAATGTCTGAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAAT
* * *
21176 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATATTTTCT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
21241 GCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAAAA
21306 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCCTG
455 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCCTG
21371 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCAT
21436 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCAA
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCAA
* *
21501 TCCCGTCTCTCTGGCCGGCGTAGT-ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
650 TCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * *
21565 GTTCATTCCCAGTC-AAGATCAGACTGGATTGGGGGTTGCAGCAGCAGGATCGACAGCATGCAGA
715 GTTCATTCCCAGTCTAAGATCAGACTGGACTGAGAGTTGCGGCAGCAGGATTGACAGCACGCAGA
* * * *
21629 GGAGGACCCAGCCGATCCCCAGCTTGCGCATCCTACCCTTCTGGCCGGTTGAGTGCTCGCACGCT
780 GG-GGACCC-GTCGATCCCC-GCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCTCGCACGCT
21694 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
21740 GCATACGGAGTTCATTCGTAGTCTAAGATCAAACCGGACCGAGGGTTTCGGTGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* *
21805 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACAATCATCGGAGCATCGTCGGAGA
66 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
21870 ACTTGACC-AGCGGCATTGGGGTTCCGGCGATCAATGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
21934 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTAATCAAACCTCGAGAACTCA
194 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21999 CACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
22064 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
*
22129 GTGCTTGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAA
22194 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCC
453 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCC
*
22259 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGT
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGC
22324 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
22389 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
648 A-ATCCCGTCTCTCTGGCCGGCGTAGT-----------CGCCCGCCCGCTCGTTTCATCGGTTGG
* * * * * *
22454 CTTAGGTATACAGAGTTCATTCCTAGTCTAAGATCGGA-TCGGACCGAGCGTTGCGGCAGCAGGA
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGAGTTGCGGCAGCAGGA
* *
22518 TTTACAGCACGCAGAGGGGGACCCGGTCGATCCCCGTCTTGCGCAT-CTCGCCCCTCTGGCCGGC
765 TTGACAGCACGCAGA-GGGGACCC-GTCGATCCCCG-CTTGCGCATCCT-ACCCCTCTGGCCGGC
* ** * * *
22582 TGAGCGCCCGCACATTCATTTTATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
826 TGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
22644 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
** * * * *** *
22708 CTTGGGCATGTGTTGGTGCCACATTTTTCTTCGTTGGGGCA-C-T---------ATCGTCGAAGA
66 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
22762 ACTTGACCGACGGCATTGGGTTTCCAATGATCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
22827 GATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAATCCTCGAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
22892 CCCCCTTAAAAAGCATTTGAGATTTTAGAGATTGGTTGCCAGTAGCCATAAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
22957 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTGAATTTTTTTA
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAA-TTTTTTG
*
23022 TGCATGCC-ACAAAATTACAAGGATC
389 TGCATGCCAACAAAAATACAAGGATC
23047 CCGTCCTACC
Statistics
Matches: 1969, Mismatches: 176, Indels: 92
0.88 0.08 0.04
Matches are distributed among these distances:
879 19 0.01
880 303 0.15
881 1 0.00
882 1 0.00
884 10 0.01
888 25 0.01
889 429 0.22
890 468 0.24
891 237 0.12
892 52 0.03
893 2 0.00
898 2 0.00
899 145 0.07
901 1 0.00
903 137 0.07
904 135 0.07
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACTTTTACCAAGTTTGGATCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCCTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCAAT
CCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACTGGACTGAGAGTTGCGGCAGCAGGATTGACAGCACGCAGAG
GGGACCCGTCGATCCCCGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:22653 original size:25 final size:26
Alignment explanation
Indices: 22618--22669 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
22608 GTTGACTTAC
22618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22644 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22669 G
1 G
22670 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23148 original size:27 final size:27
Alignment explanation
Indices: 23077--23149 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
23067 CAAAATACGG
* *
23077 AGTTTATTACCAGTCT-AAGCATATGA
1 AGTTAATTCCCAGTCTAAAGCATATGA
23103 AGTTTAAATTCCCAGTCTAAAGCATATGA
1 AG-TT-AATTCCCAGTCTAAAGCATATGA
*
23132 AGTTCATTCCCAGTCTAA
1 AGTTAATTCCCAGTCTAA
23150 GATCGGACCA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.05
27 15 0.37
28 12 0.29
29 12 0.29
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (27 bp):
AGTTAATTCCCAGTCTAAAGCATATGA
Found at i:24903 original size:26 final size:25
Alignment explanation
Indices: 24874--24925 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
24864 GTTGACTTAG
**
24874 GCATACGAAGTTTGTTCCCAGTCTAA
1 GCATACGAAG-TTCATCCCAGTCTAA
*
24900 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
24925 G
1 G
24926 ATCATACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:25272 original size:894 final size:887
Alignment explanation
Indices: 23110--28029 Score: 5551
Period size: 874 Copynumber: 5.6 Consensus size: 887
23100 TGAAGTTTAA
* * * *
23110 ATTCCCAGTCTAAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTT-TGA
1 ATTCCCAGTCT-AAGCATACG-AGTTCA-TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
** * * * * * * **
23173 CAATAGATGTTAGGCTCGGGCATCGTGCCTTGTGCTGCATTTTTCTTACGT-----CAAC-GGGC
63 CAGCACATGCTGGGCTCGGGCAT-GTG-CTGGTGCCGCATTTTTCTT-CGTCGGGGCACCATCGC
* * * *
23232 CGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGGTTCCGACGATCGGGGGGCC-GTGGG
125 CGG-AGCATCGCCAGAGAACCTGACC-GCGGCATT-GGGGTTCCG-CGATCGGGGGGCCGGGGGG
* * * * *
23296 GTGGTGCGCACAT-ATAATGCCGATGGGTGCTGATAGTTGGCCCTTATATTGG-CCCAACTATCT
186 GT-GTGCGCACATGAT-GTG-TGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCC--CTATCC
* *
23359 CTCATCAAACCTCCGAGAACT--CACCCCCTTAAAGAGCATTTGAG-GTTTACAGGTTTGGCTTA
246 CTCATCAAACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GC-TG
* *
23421 CCAGTAGCCATTAAAAGTGTCTGAAATGGGGACATTTTTTTCCAAATGGTAACAAAATCTTGTAC
308 CCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTAC
* *
23486 ACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
371 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
**
23551 GTTTGGGGCCAAAACTCCTTCCGAAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAA
436 GTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* *
23615 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATT
500 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
23680 GTATGAATTTAAAAGCCATAAAAATGGCATTGGCATACAGAAATATAAAGATGTGCCTAAACCCA
565 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
23745 CCAACCACCCTATCAATCCACGGCCTACGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCGC
630 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTG--C-CCCG-
* * * * * *
23810 CCGCCTGCTCATTTCGTTGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTCAGATCTGATCG
691 -C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
23875 AACCGAGGGTTGCGACAGCAGGATCGACAGCA--CATA----GA---G---GA-------CTTGC
753 GACAGAGGGTTGCGA-AGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTAC
* * * ** * *
23921 ACATCCCGCCTCTCTGGCCTG-TCGAGCGCCTACACGATCGTTTCGTGGGTTGACTTAGGCATAT
817 GCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
23985 GGAGTTC
881 GGAGTTC
* * *
23992 ATTCCCAATCTAAGGATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-CTGG
1 ATTCCCAGTCTAAGCATACG-AGTTCA-TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GG
* * * * ** *
24056 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTACCCCGGGGCACCATCACCGG
63 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
*
24121 AGCATTGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
128 AGCATCGCCAGAGAACCTGACC-GCGGCATTGGGGTTCCG-CGATC-GGGGGGCCGGGGGGGTGT
* * *
24186 GCGCACATGATATGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
190 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAA
* *
24251 CCTTGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
255 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
24316 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
320 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
24381 GCTGAATTGTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
385 GCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
24445 ACTCCTTGCAAAAAAATTTAAAAAAATCGCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAG
449 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
24510 AAAA-TAGATCATCTTGCCATTAAGCCTTCACGTGAAGGC-TAAGGGACCATTGTAATGAATTTA
514 AAAACGAG-TCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTA
** * *
24573 CAAGTTATAAAAATTGGCATTGGCATGCAG-AATATGAAGATGTGCCTAAA-CCACCTATCACCC
576 CAAGCCATAAAAA-TGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
24636 GATCGATCCACGGCTTGCCGCATCCCGTCTCCTCTGGCCGGCGTAGTG-CCCTCCTGCT-GTTTC
640 TATCGATCCACGGCTTG-CGCATCCCGTCT-CTCTGGCAGGCGTAGTGCCCCGCCCGCTCGTTTC
* * * * *
24699 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAAATCAGACCAAGACCAGAGGGTTTG
703 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGA-CAGAGGG-TTG
* * * * * * * *
24764 CGAACCAGGATTGGCA-CACACAAATGGGCGACCCGGCCGACTCCTCAGGCTTGCGCATTCCG-C
765 CGAAGCAGGATCGGCAGCACGCAAA-GGGGGACCCGACCGA-TCC-CCGGCTTACGCATCCCGCC
* * * * * *
24827 CCTCTGGCCAGCTGAGTGCCTGCAC-CTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTT
827 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* **
24887 GTTCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCATACCGGACCGAGGGTTGCGGCA
1 ATTCCCAGTCTAAGCATAC-GAGTTCATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * * *
24952 GTACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAG
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* *
25017 CATCGCTCGGAGAACCTGACCAGCGGCATTGGGGTTCCAGCGATCGGCGGTGCCGGGGGGGGTGT
130 CATCGC-CAGAGAACCTGACC-GCGGCATTGGGGTTCC-GCGATCGG-GGGGCC-GGGGGGGTGT
* ** * *
25082 GCGCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGTGCCCTATCCCTAATCAAA
190 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAA
* ** *
25147 CCTCGAGAACTCACGCTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG-CATT
255 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
25211 AAGGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCAC-AAATCTTGTAGCACTTCGAGTTTTT
320 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTTTT
* * * *
25274 AGCCGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCCACACAATTTTTGGGGCCA
384 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC-CAA-GTTTGGGGCCA
* * ** *
25339 AAACTCCTACCGAAAATTTTTTAAAAAAATCCTGAACCGTAAAAAGTTT-AGAAAATCATG-AAA
447 AAACTCCTTCCAAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCATGAAAA
*
25402 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTT
510 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
25467 ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAGGATGTGCCTAAACCCACCTACCACCC
575 ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
25532 TATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCAGGCGTAGTGCCCGCGTGCCCGCCCGCCT
640 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGT----GC---CCCGCCCG-CT
* * **
25597 GCTTGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCA-
697 -C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAG
* * * * * *
25661 AGGGTTGCGGTAGTAGGATCGGTACCACGCAGAGGGGGACCCGACCGATCCCCGTCTTACGCATC
758 AGGGTTGC-GAAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACGCATC
* *
25726 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGCTGACTTAGGCATAC-G-G--
822 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
25787 -
887 C
25787 ------AG-----G--T-C-A--T--TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
1 ATTCCCAGTCTAAGCATACGAGTTCATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * ** * * * *
25833 CACATGCTGGGCTCGGGCATGGGCTGGTG-TGCATTTTTCTTCACCGAGACACCATCGTCAGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * * * *
25897 ATCGTCGGAGAACCTAACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTTTGTG
131 ATCGCCAGAGAACCTGACCG-CGGCATTGGGG-TTCCGCGATC-GGGGGGCCGGGGGGGTGTGCG
* * * *
25961 CACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGTTCCTCTATCCCTCATCAAACCT
193 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCT
* * * *
26026 CAAAAACTCACACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
258 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
26091 GTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
323 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * **
26156 GAATTTTTTTGTGCATGCCAACAAAAAAACAAGGGTCATGTCTTCCAAGTTTTTTAGG-CAAAAC
388 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG--TTTGGGGCCAAAAC
* * *
26220 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAA
451 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* **
26285 AACGAGTCGTCCTGCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
516 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
26350 CATAAAAATGGCAATGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
581 CATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
26415 TCCATGGCTTGCGCATGCCGTCTCTCTGACAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
646 TCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTG--C-CCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
26480 TTGGCTTTGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAAGGTTGTGGCAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTG-CGAAGCA
* * ** * * *
26545 GGATCAGTAGCACGCAGTGGGGGA-CCGATCGATCCCTGGCTTACGCATCCCGCCCCTCTGGTCG
772 GGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
* *
26609 GCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTC
837 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
26660 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGTGTTGCGGC
1 ATTCCCAGTCTAAGCATAC-GAGTTCA-TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * *
26725 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCGTTTTTCTTCGTCGGGGCACCATCGCCAGA
64 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* ** *
26790 GCATCGCCAGAGAACTCTGACCAGCGGCATTAGGGTTCCAATGATCGGGGGGCC-GGGAGGTGTG
129 GCATCGCCAGAGAAC-CTGACC-GCGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGGTGTG
* *
26854 CGCACATGATGT-TGATGGCTGCTGGCACTT-GCCC---------T---CTATCCCTCATCAAAC
191 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAAC
* **
26905 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGTTATTA
256 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
26970 AAGTGTCTGAAATGGGGACA-GTTTTTC-AATAGTCAC-AAATCTTGTACACTTCGAG-TTTTAG
321 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* **
27031 CTGAA-TTTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTCGGGGGGAAAA
386 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAA
* * * * * * **
27094 -TCCTTCCAAAAATATTTTAAGAAATCACAAACCGCAAATAGTTTTGAAAATCGA-GAAAAATAG
450 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAG
* * *
27157 AAAACGGGTCGTCTTGCCATGAAACTTCGCGTGAAGTCTTAAGGGACCATTGTATGAATTTACAA
514 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
27222 GCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATC
579 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
27287 GATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGTCCGCCCGCTCATTTCGTC
644 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCC---CCGCCCGCTCGTTTCGTC
* * *
27352 CGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGATAG
706 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGA-AG
* * * * * * *
27417 CAGGATCGACAGCACGCAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCCGCCACTCTGGT
770 CAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
*
27482 CGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTC
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
27535 ATTCCCAG-C----C-TA--A----A----A---T----T-GGACCAGACCAAGGGTTGCAGCAG
1 ATTCCCAGTCTAAGCATACGAGTTCATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * *
27576 CACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCCCCATCGTCGGAGC
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* *
27641 ATCGCCAGAGAACCTGACCGACGGCACTGGGGTTTCGACGATC-GGGGGCCGGGGGGGTGTGCGC
131 ATCGCCAGAGAACCTGACCG-CGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGGTGTGCGC
** *
27705 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTTGTCAAACCTT
194 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTC
* *
27770 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCTTTAAAG
259 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
27835 TGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
27900 AATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACACC
389 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
27965 CTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
454 TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
28030 AAAAACGGCT
Statistics
Matches: 3467, Mismatches: 412, Indels: 332
0.82 0.10 0.08
Matches are distributed among these distances:
847 8 0.00
848 43 0.01
849 107 0.03
850 5 0.00
854 1 0.00
857 1 0.00
859 1 0.00
862 94 0.03
863 5 0.00
864 8 0.00
865 18 0.01
866 12 0.00
867 24 0.01
868 161 0.05
869 83 0.02
870 2 0.00
871 2 0.00
872 3 0.00
873 14 0.00
874 349 0.10
875 125 0.04
876 187 0.05
877 229 0.07
878 138 0.04
879 58 0.02
880 78 0.02
881 331 0.10
882 138 0.04
883 78 0.02
884 70 0.02
885 66 0.02
886 14 0.00
887 2 0.00
888 2 0.00
889 2 0.00
891 1 0.00
893 29 0.01
894 271 0.08
895 243 0.07
896 255 0.07
897 47 0.01
898 1 0.00
902 6 0.00
903 16 0.00
904 30 0.01
905 52 0.01
906 11 0.00
907 46 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
ATTCCCAGTCTAAGCATACGAGTTCATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCGCCAGAGAACCTGACCGCGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCAC
ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGAAGCAGGATCGGCA
GCACGCAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
Found at i:26676 original size:26 final size:26
Alignment explanation
Indices: 26647--26699 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26637 GTTGACTTAG
26647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26699 G
1 G
26700 ATTGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29767 original size:26 final size:26
Alignment explanation
Indices: 29730--29782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29720 GTTGACTTAG
*
29730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29756 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
29782 G
1 G
29783 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:30543 original size:893 final size:890
Alignment explanation
Indices: 28814--31299 Score: 4026
Period size: 893 Copynumber: 2.8 Consensus size: 890
28804 GCACCCGCAC
* * * ** * *
28814 GCTCGTTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCCAGAATAAGCATATGGAGTTCGTT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
28879 CCCAGTCTATGACCGGACCAGATCGAGGGTTGTGACAGCACATGCTGGGA-TCGGGCATGTGCTG
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCT-GGACTCGGGCATGTGCTG
** * * *
28943 GTGATGCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCA
130 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCGTCGGAGAACCTGACCGGCGGCA
* *
29008 TTGGGGTTCCGACAATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTAC
194 TTGGGGTTCCGACGA-TGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
29073 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGAGCA
* * * *
29138 TTTGAAATTTTACAGGTTTACTGTCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTCTTTTCA
322 TTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
29203 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAAAAA
387 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAAAAA
29268 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCA
452 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCA
29333 AACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGT
517 AACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGT
29398 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATAT
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATAT
29463 GAAGATGTGCCTAAATGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGC
647 GAAGATGTGCCTAAATGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGC
29528 CAACGTAGTGCCCGTCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAAGCATACAAAGTTC
712 CAACGTAGTGCCCGTCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAAGCATACAAAGTTC
29593 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGG
777 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGG
29658 GACCCGACCAATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGTTCAT
842 GACCCGACCAATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGTTCAT
*
29707 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*
29772 CCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGACTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGACTCGGGCATGTGCTGG
* * *
29837 TGCCGCATTTTTCTTCGTCGGGGCAACATCGGTGGAGCATCGTCGGAGAACCCGACCGGCGTCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATC-GTGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* *
29902 TGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACA
195 TGGGGTTCCGACGAT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
29967 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCAT
259 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
30032 TTGAGATTTTGCAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAATGGGGACACTTTTTTCAA
323 TTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
30097 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAAAAAT
388 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAAAAAT
30162 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCAA
453 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCAA
30227 ACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTG
518 ACCGTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTG
30292 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATATG
583 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATATG
30357 AAGATGTGCCTAAATGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCC
648 AAGATGTGCCTAAATGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
30422 AACGTAGTGCCCGTCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAAGCATACAGAGTTCA
713 AACGTAGTGCCCGTCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAAGCATACAAAGTTCA
*
30487 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGGGG
778 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGG
*
30552 ACCCGGCCAATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGTTCAT
843 ACCCGACCAATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGTTCAT
30600 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
30665 CCCAGTCTAAGATTGGACCGGACCAAGGGTTGTGGTACCACATGCTGGGCTCGGGCATGTGCTGG
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGACTCGGGCATGTGCTGG
* ** ** *
30730 TGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGAGGCAT
131 TGCCGCATTTTTCTTCGTCGGGGCACCATC-GTGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * *
30795 TGGGGTTCTGACGAT-------C-AGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTT
195 TGGGGTTCCGACGATGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
30852 GGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
260 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATT
*
30917 TGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAA
324 TGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
30982 TGGCCACAAAATCTTGTACACTTTGAGTTTTTAACT-AACTTTTTTTATGCATGCCAAAAAAAAT
389 TGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTTTGTGCATGACAACAAAAAT
* ** * ** *
31046 ACAAGGATCACGTCTACCAAGTGTGAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCAG
453 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCA-
* * * * **
31110 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
517 AACCGTAAAAA-TTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
* * * *
31175 TGAA-GCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
581 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATA
* * * * *
31239 TGAAGATGTGCCTAAA-CCAACCTACCACCCTATCGATCCATGGCTTGCACATCCCATCTCT
646 TGAAGATGTGCCTAAATGC-ACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCT
31300 TTGGTATACG
Statistics
Matches: 1490, Mismatches: 95, Indels: 25
0.93 0.06 0.02
Matches are distributed among these distances:
883 7 0.00
884 387 0.26
885 54 0.04
892 4 0.00
893 1036 0.70
894 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGACTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
GGGGTTCCGACGATGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCAAACC
GTAAAAATTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAATGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCAAC
GTAGTGCCCGTCCGCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAAGCATACAAAGTTCATTC
CCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACC
CGACCAATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGTTCAT
Found at i:30659 original size:26 final size:26
Alignment explanation
Indices: 30623--30675 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
30613 GTTGACTTAG
30623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30675 G
1 G
30676 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31341 original size:26 final size:26
Alignment explanation
Indices: 31305--31355 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31295 TCTCTTTGGT
31305 ATACGAAGTTCATTCCAAGTCTAAGC
1 ATACGAAGTTCATTCCAAGTCTAAGC
* *
31331 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCAAGTCTAAG
31356 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCAAGTCTAAGC
Found at i:32172 original size:26 final size:26
Alignment explanation
Indices: 32122--32174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32112 GTTGACTTAG
*
32122 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
32148 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32174 G
1 G
32175 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33076 original size:27 final size:27
Alignment explanation
Indices: 33027--33078 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
33017 GTTGACTTAG
*
33027 GCATACGAAGTTCATTCATAGTCTAAA
1 GCATACGAAGTTCATTCACAGTCTAAA
* *
33054 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCACAGTCTA
33079 TGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (27 bp):
GCATACGAAGTTCATTCACAGTCTAAA
Found at i:33393 original size:907 final size:903
Alignment explanation
Indices: 31437--37071 Score: 7041
Period size: 907 Copynumber: 6.3 Consensus size: 903
31427 CCCCCTTAAA
* *
31437 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * *
31502 ACTCACACCTCCTTAAAGAGCATGTCAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
31567 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
31632 TTTTTGTGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTCC
* * * * * *
31697 AAAAAAATTTTAACAAATCTCGAACCGCTAAAAGTTTTGAAAATCGTGAAAAAGAGAAAACGAGT
260 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGT
* * *
31762 CGTCTTACCATTAAAAGTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAA
325 CGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
31826 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
389 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
31891 GCTTACGCATGCCGTCTCTTTGGCCGACGTAGT-----CCC-CGCTCGCCCGCCTGCTC-TTTCC
454 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCGCCCGCCCGCTCGTTT-C
* * * * * * **
31949 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGGCTAAGATCGGACCGGATCGAGGGTTGCAA
518 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTACGG
** * * * **
32014 CAGCAGGATCGGTAGCACCCAGAGGTGGACCCG-GCTGATCCCCGGCTTATGCATCCCGCCCCTC
583 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
32078 TGGCCGGCTGAGCGCCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAT
647 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
32143 TCTAAGCATACGGAGTTCATTCCCGGTCTAAGATCGGATTG-GGCCGAGGGTTGCTGCAGCACAT
712 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACAT
* * * * *
32207 GCTGGGCTCAGGCATGTG-TGGTGCTGCATTTTTC-TCTGTCGAGGCATCATCGTCAGAGCATCG
777 GCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGCCGGAGCATCG
* * * * * * *
32270 TCGGAGAACCTGACCGGTGCCATTAGGGTTCCGGCGAACGGGGGGCCGAGGGGGTGTGCGCACAT
840 CCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGGGTGTGCGCACAT
* * * *
32335 GATGTGCGACGGGTGCTGGTTCTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCGCAG
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAG
* * *
32400 -AGTCACACACCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
65 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
32464 CTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTATACACTTAGGGTTTTTAGCCG-AT
130 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
32528 TTTTTTGTGCATGCCAAGAAATATGCAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTCT
195 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTC-
* * * *
32593 CAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCCTAAAAAATAAAAAACGAG
259 CAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAG
*
32658 TCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAA
324 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
32723 AATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
389 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * *
32788 GCTTATGCATCCCGTTTCTCTGGCCGCCGTAATGCCCGCCCGTGCGCCCGCCCGCCCGCTTGTTC
454 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-T-CGCCCGCCCGCCCGCTCGTTT
* * * *
32853 CATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTTACG
517 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTACG
* * * * * *
32918 GTAGCAGGATCGACAGCATGCAGAGGAGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTT
582 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * **
32983 TGGCTGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCATAG
647 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** * * *
33048 TCTAAAGCATACGGAGTTCATTCCCAGTCTATGATCAGATCGA-AATGAAGGTTGCGGTAGCACA
712 TCT-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACA
* ** *
33112 TGCTGGGCTCGAGCAGGTGCTGGTGCTACATTTTTCTCCGTCGGGGCACCATCGCCGGAGCATCG
776 TGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * * * * ** *
33177 TCAAAGAACCTGACCAGTGGCATTGGGGTTCCGACGATCGGACGGGCCAGGGGGTGTGAACGCAT
840 CCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCAGGGGGTGTGCGCACAT
*
33242 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
33307 ACTCACACCCCCTTAAAGGGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
33372 TGAAATGGCGACACTTTTTTCAAATGGTCACAAACTCATGTACACTTTGAGTTTTTAGTTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
33437 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGCCCAAAACTCTTTCG
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCA
*
33502 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
261 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTC
*
33567 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
326 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
33632 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGAC
391 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * **
33697 TTGCGCATCCCGTCTCTCTGGTCGACGT--TG--TG-CC-CGCCCGCCCATCCGCTCGTTTCGTC
456 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCGCCCGCCCGCTCGTTTCGTC
* * *
33756 AGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATC-GTACCA-AACCAAGGGTTACGGC
521 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAA-CGAGGGTTACGGC
* * * *
33819 AGCAGGATCAACAGCACGTAGAGGAGGACCC-AGTCGATCCCCAGCTTGCGCATCCCGCCCCTCT
584 AGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * *
33883 GGGCGGTTGTGTGCCCGCACACTCATTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGT
648 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
33948 CTAAGCATACGAAGTACATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGTAGCACATG
713 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACATG
* * *
34012 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTC
778 CTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * **
34077 GGAGAACCTGACCGGCGGCATCGGGGTTCCTG-CGATCGGAGGGGTCGGGGGGTGTGTGCGCACA
842 GAAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGG-GGGG-CCAGGGG-GTGTGCGCACA
34141 T
903 T
** *
34142 GATGTGCGATGGAAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
34207 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
34272 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTAAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
34337 TTTTTGTGCATGGCAACAAAAATACAAGGATCCCATCTACCAAGTCTGGGGCC-AAACTCCTTCC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCC
* * * * * *
34401 GAAAAAATTTTGAAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
260 AAAAAAATTTT-AAAAAA-TCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGA
*
34466 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
323 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
34531 AAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCGACCTACGACCCTATTGATCCAC
388 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
34596 GGCTTGCGCATCCCGTCTCTCTGGTCGACATAGT----G-CC-CGCCCGTCCGCCCGTTCGTTTC
453 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCGCCCGCCCGCTCGTTTC
* * * * * *
34655 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCCAAGATCAGACC-GAAACAAGGGTTGCA
518 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AACGAGGGTTACG
* * ** *
34719 GCAGCAGGATTGGCAGCAAACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
582 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
34784 TGGGCGGCTGTGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
647 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
34849 TCT----A-A--GAGTTCATTCCCAGTCTAAGATCGGACCG-GACCGGGGGTTACAACCGTACAT
712 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACAT
* * * *
34906 GCTGGGCTCCGGCATGTGCTGCTGTCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGC
777 GCTGGGCT-CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
34971 CGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC----GG-G-G-G-----
841 CGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACAT
**
35022 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
35087 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCACTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
35152 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTATACATCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * **
35217 TTTTTGTGCAAGCCAACTAAAATAAAAGGATCATGTCTACCAAG-TTCGTTCCTAAAACTCCTTC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACT-CTTC
* * * * *
35281 CAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAG
259 CAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAG
*
35346 TCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
324 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
35411 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA--CTATTCGATCCAC
389 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCAC
* * * *
35474 GGCTTGCGCAT-CC-TCTCTCTGGCTGGCGTAGTGCTCG-CC-CGCCCGCCCGCCTGCTCGTTTC
453 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCGCCCGCCCGCTCGTTTC
* ** ** *
35535 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTACGG
518 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTACGG
* * * * * * * * **
35600 TAGCAGGATCAACAGCGCACAGAGGGGGACCCGACCGAT-CCCGGGTTACACATCCCATCCCTCT
583 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
35664 GGCCGACTGAGCGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
648 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
35729 CTCAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCACCAGTACATG
713 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACATG
* * ** *
35793 CTAGGTTCGGGCATGTGCTGG-GCCGCA--TTTCTTCGTCGGGGCACCATCATCGGAGCATCACC
778 CTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * * *
35855 -AGAGAACCTGACAGACGGCATTGAGGTTCTTG-CGATCGGAGGGGCCAGGGGGTGTGCGCACAT
842 GA-AGAACCTGACCGGCGGCATTGGGGTTC-CGACGATCGG-GGGGCCAGGGGGTGTGCGCACAT
* ** *
35918 GATGTGCGATGGGTGCTGGTACTTCGCCCTTATA-TCACCCCCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
35982 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
36047 TAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
36111 TTTTTATGCTTGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTC
196 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C-TTC
* * * * * * * * *
36176 C-GAAAAACTTTAAAAAATC-CTAAATCGTAAAAAGTTTTGAAAATTAT-GAAAATAGAAAACAA
259 CAAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGA
36238 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCCAT-A
323 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
36301 AAATGGCAATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
388 AAATGGC-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** * *
36366 CGGCTTGCGCATCCAGT-TTTCTGGCCGGTGCAGTG-CCG-CC-CGCCCGCCGCCGCCTGCTCGT
452 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCG-C-CCGCCCGCTCGT
* *
36427 TTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGA-CAGAATGAGGGTT
515 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGAACGAGGGTT
* * * *
36491 GCGGTAGTAGGATC-A-A-CACGCAGAGGGGGACCCGA-CGATCCCCGGCTTGCTCATCCCG-CC
579 ACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
36551 CTCTGGCCGACTGTGTGCCCGCACGCTCGTTTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCC
644 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
36615 TAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTT-CTAGC-GT
709 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGC-AGCAG-
* * * * *** *
36677 CATATGCTGGGCTCGGTATTTGCTGGTGCCACATTTTTCTTTACCGGGG-ACCATCACCGGAGCA
772 CACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
* * * * * **
36741 TCACCGAAGAACCTGACGGGTGACATT-AGGTTCCGACGATC-GGGGG-TTGGGGGTGTGCGCAC
837 TCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCAC
36803 AT
902 AT
*
36805 GATGTGCGATGGGTGCTGGTACTTGGCCC-TATATTGGGCCCCTATCCCTCATCAAACCTCAAGA
1 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
36869 ACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
36934 TGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAAT
131 TGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * * *
36999 TATTTTGTGCAAG-CAACTAAAATACAGGGATCATGTCTACCAAGTTCGGGGCTAAAACTCCTCC
195 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTC
37063 CAAAAAAAT
259 CAAAAAAAT
Statistics
Matches: 4151, Mismatches: 489, Indels: 204
0.86 0.10 0.04
Matches are distributed among these distances:
876 15 0.00
877 5 0.00
878 19 0.00
879 232 0.06
880 331 0.08
881 21 0.01
882 1 0.00
883 63 0.02
884 8 0.00
885 6 0.00
886 68 0.02
887 142 0.03
888 61 0.01
889 75 0.02
890 98 0.02
891 90 0.02
892 100 0.02
893 91 0.02
894 162 0.04
895 314 0.08
896 64 0.02
897 239 0.06
898 319 0.08
899 195 0.05
900 251 0.06
901 6 0.00
902 391 0.09
903 4 0.00
904 1 0.00
905 182 0.04
906 70 0.02
907 460 0.11
908 67 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCA
AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTACGGCAG
CAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAGACCGAGGGTTGCAGCAGCACATGCTG
GGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGAAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACAT
Found at i:33967 original size:26 final size:26
Alignment explanation
Indices: 33926--33978 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33916 GTTGACATAG
* *
33926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
33952 GCATACGAAGTACATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
33978 G
1 G
33979 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTACATTCCCAGTCTAA
Found at i:34859 original size:19 final size:19
Alignment explanation
Indices: 34835--34874 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
34825 TAGGCATACG
34835 GAGTTCATTCCCAGTCTAA
1 GAGTTCATTCCCAGTCTAA
34854 GAGTTCATTCCCAGTCTAA
1 GAGTTCATTCCCAGTCTAA
34873 GA
1 GA
34875 TCGGACCGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (19 bp):
GAGTTCATTCCCAGTCTAA
Found at i:35743 original size:26 final size:26
Alignment explanation
Indices: 35707--35756 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
35697 GTTGACTTAG
*
35707 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
35733 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
35757 AAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Found at i:36633 original size:26 final size:26
Alignment explanation
Indices: 36597--36649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36587 GGTTGACTAG
*
36597 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
36623 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36649 G
1 G
36650 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.