Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168051.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37020
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Found at i:2561 original size:4 final size:4
Alignment explanation
Indices: 2552--2688 Score: 52
Period size: 4 Copynumber: 33.5 Consensus size: 4
2542 AGAAAATAAT
* *
2552 AATA AATA AATA AATTA TAATA TAAT- AATA AATA TATA ACTA TAA-A
1 AATA AATA AATA AA-TA -AATA -AATA AATA AATA AATA AATA -AATA
* * * *
2598 AATAA AATA CATATA AAT- ATTA AAAA AACA AA-A AATA AATA AATA AAGA
1 AAT-A AATA -A-ATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
* * * * *
2647 TATA CATA TATT AATA CATA GTAAT- AATA AATA AAT- AATA AA
1 AATA AATA AATA AATA AATA --AATA AATA AATA AATA AATA AA
2689 ATGCCTAAAA
Statistics
Matches: 101, Mismatches: 18, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
3 16 0.16
4 63 0.62
5 15 0.15
6 7 0.07
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:2574 original size:43 final size:43
Alignment explanation
Indices: 2458--2574 Score: 102
Period size: 43 Copynumber: 2.7 Consensus size: 43
2448 CAGATAAACG
* * *
2458 AAAAACAAAA-AAATAAAAAAATTAATAATAATAACAGATAATA
1 AAAAATAAAATAAATAAATAAATT-ATAATATTAACAGATAATA
2501 AAAAATAAAATAAGATAAATCCAAA--A-AATATT-ACAAGATAA-A
1 AAAAATAAAATAA-ATAAAT--AAATTATAATATTAAC-AGATAATA
*
2543 GAAAATAATAATAAATAAATAAATTATAATAT
1 AAAAATAA-AATAAATAAATAAATTATAATAT
2575 AATAATAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
40 3 0.05
42 17 0.28
43 30 0.49
44 3 0.05
45 5 0.08
47 3 0.05
ACGTcount: A:0.70, C:0.04, G:0.03, T:0.22
Consensus pattern (43 bp):
AAAAATAAAATAAATAAATAAATTATAATATTAACAGATAATA
Found at i:2602 original size:26 final size:26
Alignment explanation
Indices: 2544--2641 Score: 80
Period size: 26 Copynumber: 3.9 Consensus size: 26
2534 CAAGATAAAG
*
2544 AAAATAATAATAAATAAATAAATTAT
1 AAAATAATAATAAATATATAAATTAT
* *
2570 AATATAATAATAAATATAT-AACTAT
1 AAAATAATAATAAATATATAAATTAT
*
2595 AAAAATAA-AATACATATA-AATATTA-
1 -AAAATAATAATAAATATATAA-ATTAT
* * *
2620 AAAA-AACAAAAAATAAATAAAT
1 AAAATAATAATAAATATATAAAT
2642 AAAGATATAC
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
23 2 0.03
24 13 0.22
25 17 0.29
26 26 0.45
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (26 bp):
AAAATAATAATAAATATATAAATTAT
Found at i:2716 original size:6 final size:6
Alignment explanation
Indices: 2695--2730 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
2685 TAAAATGCCT
*
2695 AAAATA TAAA-A AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A
2731 TACAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:3801 original size:26 final size:26
Alignment explanation
Indices: 3765--3818 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
3755 GTTGACTTAG
3765 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
3791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3817 GC
1 GC
3819 TCAGACCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:5151 original size:887 final size:883
Alignment explanation
Indices: 3437--5351 Score: 2947
Period size: 887 Copynumber: 2.2 Consensus size: 883
3427 CTCATTTCGT
* * * * *
3437 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGTAGAAATATGGAGATGAG
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTG
* * *
3502 CTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGTCGGTGTAGT
66 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGT
* * *
3567 GCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAT
131 ----GCCCGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
3632 GATCAGACTAGACCGAGGGTTGAGCTAACAGGATTGGCAGCACGCAGAGGGGGACCCGACGGATC
192 GATCAGACCAGACCGAGGGTTGAGCTAACAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * *
3697 CCTGGCTTGCGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGTACACTCGTTTCATGGGTTGACT
257 CCCGACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACT
* *
3762 TAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCA
322 TAGGCATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
3827 GACTGAGGGTTGCGGGAGCACATGCTGCGCTCAGGCATGTGCTGGTGTCGTATTTTTTTTCGCCT
387 GACCGAGGGTTGCAGGAGCACATGCTGCGCTCAGGCATGTGCTGGTGTCGCATTTTTTTTCGCCC
* * * * * * *
3892 GGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGAAGTTTCGACGATTGGGGGGGTGGGGGG
452 AGGCCACCATCACAGGAGAACCTAACCGACGGCATTGAAGTTCCGACGATTGGGGGGGGGGGGGG
* *
3957 TGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAA
517 TGCGCAAATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
4022 ACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
582 ACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
4087 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAATTTTTA
647 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAATTTTTA
* *
4152 GCTGAATGTTTTTGTGCATGCCAACAAAAGTGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
712 GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
4217 CTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAG
777 ATCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
4282 AAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
842 AAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
4324 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTG
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTG
* * *
4389 CCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCACATCTCGCCTCTCTGGCCGGTGTAGT
66 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGT
*
4454 GCCCGCCCGCTTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
131 GCCCGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
* * * ** **
4519 AGACCAGACTGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGATGCGACCGATCCCCG
196 AGACCAGACCGAGGGTTGAGCTAACAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * *
4584 ACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGG
261 ACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGG
* ** *
4649 CATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGGCC
326 CATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * *
4714 GAGGGTTGTAGGTGCATATGCTAG-GCTCGGGCATGTGCTGGTG-CTGCATTTTTTTTCGCCCAG
391 GAGGGTTGCAGGAGCACATGCT-GCGCTCAGGCATGTGCTGGTGTC-GCATTTTTTTTCGCCCAG
* * ** *
4777 GCCACCATCACATGAGAACCTAACC-AGTGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGG
454 GCCACCATCACAGGAGAACCTAACCGA-CGGCATTGAAGTTCCGACGATTGGGGGGG-GGGGGGG
* * *
4841 TGTGCAAAAATGATGTGTGGTGGGTGCT-AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
517 TGCGC--AAATGATGTGCGATGGGTGCTGA-TACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
4905 CAAACCTGGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
579 CAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4970 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTT
643 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAATT
* *
5035 TTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
708 TTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
5100 AAAAATCCTTCTGAAAAAATTTTCAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
773 AAAAATCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAA
*
5165 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
838 ATAGAAAACGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
**
5211 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGGCAAAAATATGAAGATGTG
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTG
* * **
5276 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT
66 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGT
5341 GCCCGCCCGCC
131 GCCCGCCCGCC
5352 CGCCCGTCCG
Statistics
Matches: 933, Mismatches: 87, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
882 2 0.00
883 327 0.35
884 11 0.01
885 1 0.00
886 73 0.08
887 519 0.56
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGT
GCCCGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
AGACCAGACCGAGGGTTGAGCTAACAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
ACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTGCAGGAGCACATGCTGCGCTCAGGCATGTGCTGGTGTCGCATTTTTTTTCGCCCAGGC
CACCATCACAGGAGAACCTAACCGACGGCATTGAAGTTCCGACGATTGGGGGGGGGGGGGGTGCG
CAAATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAATTTTTAGCTG
AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
TTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGCCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
Found at i:5423 original size:26 final size:26
Alignment explanation
Indices: 5389--5441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5379 GTTGACTTAG
5389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5415 GCATGCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5441 G
1 G
5442 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6119 original size:753 final size:740
Alignment explanation
Indices: 4629--6159 Score: 2251
Period size: 751 Copynumber: 2.1 Consensus size: 740
4619 CCGCACGCTT
* *
4629 GTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCA
1 GTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
4694 GTGTAAGATTGGACCAGGCCGAGGGTTGTAGGTGCATATGCTAGGCTCGGGCATGTGCTGGTGCT
65 GTCTAAGATTGGACCAGACCGAGGGTTGGAGGTGCACATGCTAGGCTCGGCCATGTGCTGGTGCC
* * * * *
4759 GCATTTTTTTTCGCCCAGGCCACCATCACATGAGAACCTAACCAGTGGCATTGGGGTTCCGGCGA
130 GCATTTTTTTTCGCCCAGGCCACCAGCACATGAGAACCTAACCAGCGACATTAGGGTTCCGACGA
* * *
4824 TTGGGGGGGCGGGGGGGTGTGCAAAAATGATGTGTGGTGGGTGCTAGTACTTGGCCCTTATATTG
195 TTGGGGGGCCGGGGGGGTGTGCAAAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
* ** *
4889 GCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
260 GCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
4954 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
325 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
5019 CTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTC
390 CTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTC
*
5084 TACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTCAAAAAATCTTGAACCGTAAAAAGTT
455 TACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
5149 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
520 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
*
5214 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGGCAAAAATATGAAGATGTGCCT
585 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
* ** * * * *
5279 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCC
650 AAACCCACCTACCACCCTATCGATCCACGGCTAGCACATCCCGCCTCTCCGACCGACATAGTGCC
5344 CGCCCGCCCGCCCGTCCGTTTCGTCG
715 CGCCCGCCCGCCCGTCCGTTTCGTCG
* *
5370 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCTCA
1 GTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
5435 GTCTAAGATTGGACTAGACTGAGGGTTGCGA-GTGCACATGCTGGGCTTGGCCATGTGCTGGTGC
65 GTCTAAGATTGGACCAGACCGAGGGTTG-GAGGTGCACATGCTAGGCTCGGCCATGTGCTGGTGC
* * * *
5499 CGCATTTTTTTTCGCCCGGGTCGCCATCGCTGGAGCATCGTTAGAGAACCTGATC-GACGACATT
129 CGCATTTTTTTTCGCCC-AG--GCCA-C-C---AGCA-C-AT-GAGAACCTAACCAG-CGACATT
* * ** * * *
5563 AGGGTTTCGACGATT-GGGGGCCGGGGTGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTT
182 AGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCAAAAATGATGTGCGATGGGTGCTAGTACTT
5627 GGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
247 GGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * *
5692 TGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAA
312 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
5757 TGGTCAGAAAATCCTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATA
377 TGGTCACAAAATCCTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATA
** * **
5822 CAAGGATCACGTCTACCAAGTTTGGGGGTGAAAACTTGGTTCTGAAAAAATTTTAAAAAAATCTT
442 CAAGGATCACGTCTACCAAGTTT-GGGGCCAAAA-ATCCTTCTGAAAAAATTTTAAAAAAATCTT
*
5887 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCAC
505 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
5952 ATGAAGGCTTAAGGGACCATTGTATGAATTTA-AGAGCCATAAAAATGGCATTGGCATGGCAAAA
570 ATGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGGCAAAA
*
6016 ATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTAGCACATCCCGCCTCTC
634 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTAGCACATCCCGCCTCTC
* *
6081 CGACCGGCATAGTGCCCGCCCGGCCGCCCGAT-CGTTTCGTCG
699 CGACCGACATAGTGCCCGCCCGCCCGCCCG-TCCGTTTCGTCG
6123 G--T-T--G--G-CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
6160 ACCGGACTGG
Statistics
Matches: 711, Mismatches: 62, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
741 129 0.18
742 2 0.00
744 36 0.05
745 2 0.00
746 1 0.00
747 1 0.00
749 4 0.01
750 1 0.00
751 251 0.35
752 36 0.05
753 247 0.35
754 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (740 bp):
GTTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATTGGACCAGACCGAGGGTTGGAGGTGCACATGCTAGGCTCGGCCATGTGCTGGTGCCG
CATTTTTTTTCGCCCAGGCCACCAGCACATGAGAACCTAACCAGCGACATTAGGGTTCCGACGAT
TGGGGGGCCGGGGGGGTGTGCAAAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
CCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
TGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTAGCACATCCCGCCTCTCCGACCGACATAGTGCCC
GCCCGCCCGCCCGTCCGTTTCGTCG
Found at i:7849 original size:903 final size:896
Alignment explanation
Indices: 5370--8221 Score: 3913
Period size: 892 Copynumber: 3.2 Consensus size: 896
5360 CGTTTCGTCG
* * *
5370 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCTCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCA
* * * * * *
5435 GTCTAAGATTGGACTAGACTGAGGGTTGCGAGTGCACATGCTGGGCTTGGCCATGTGCTGGTGCC
66 GTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
* * **** *
5500 GCATTTTTTTTCGCCCGGGTCGCCATCGCTGGAGCATCGTTAGAGAACCTGATCGACGACATTAG
131 GCATTTTTTTTCGCCCGGGGCACCATCGC--GAGCATCACCGGAGAACCTGA-CGACGGCATTA-
* * *
5565 GGTTTCGACGATT--GGGGGCCGGGGTGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTG
192 GGTTTCGACGATTGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
*
5628 GCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
257 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* * *
5693 GAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAAT
322 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
5758 GGTCAGAAAATCCTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTAACAAAAATAC
387 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
** **
5823 AAGGATCACGTCTACCAAGTTTGGGGGTGAAAACTTGGTTCTGAAAAAATTTTAAAAAAATCTTG
452 AAGGATCACGTCTACCAAGTTT-GGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAAAAAATCTTG
* *
5888 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACA
515 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACA
*
5953 TGAAGGCTTAAGGGACCATTGTATGAATTTA-AGAGCCATAAAAATGGCATTGGCATGGCAAAAA
580 TGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGGCAGAAA
* * * *
6017 TATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTAGCACATCCCGCCTCTCC
644 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * *
6082 GACCGGCATAGTGCCCGCCCGGCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
709 GGCCGACGTAGTG-CCG--CGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
6147 TTCCCAGTCTAAGACCGGACTGGACCGAGGGTTGCT-GCAGCAGGATCGACAGTACGCTGAGGGG
771 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-TGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * * * * * * *
6211 GTCTCGATCGA-TCCCTGGCCTGCGCATCTTGCCCCT-GAGGCCGACGGAGCACCTGGACGCTC
835 GACCCGATCGATTCCC-GGCTTGCACATCCTGCCCCTCTAGCCCG-CTGAACGCCTGCACGCTT
* * * * *
6273 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGACTTCA-TCCCT
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCC-
* ** * * * * *
6337 TGTCTAAGATTAGACTAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGC
65 AGTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGC
* *
6402 CGTATTTTTTTTCACCC-GGG--CCA---C---CATCACCGGAGAACCTGACCGACGGCATTACG
130 CGCATTTTTTTTCGCCCGGGGCACCATCGCGAGCATCACCGGAGAACCTGA-CGACGGCATTA-G
* *
6458 GTTTCGATGATTGGGGGGG-C-GGGGGG-GTGCATGCACATGATGTGCGATGGGTGCTGGTAGTT
193 GTTTCGACGATTGGGGGGGCCGGGGGGGTGTGCA--CACATGATGTGCGATGGGTGCTGGTACTT
* *
6520 GGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATT
256 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
6585 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
321 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6650 TGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAT
386 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAAT
*
6715 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCG
450 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
* * *
6780 AGCCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCGTCTTGCCCTGAAACTTCACA
515 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACA
* * * *
6845 AGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGGTAGAAAT
580 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * ** *
6910 ATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGCCTTGCGCATCCCGTTTCGCTG
645 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* *
6975 GCCGACGTAGTGCCTGCGTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
710 GCCGACGTAGTGCC-GC--GCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
7040 TCCCAGTCTAAGGTGGGACCGGACCAAGGGCTGTGGCAGCAGGATCGGCAGCACGCAAAAGGGGA
772 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * *
7105 CCCGA-CTGATTCACAGCTTGCACATCCTGCCCCTCTAGCCCGCTGAATGCCTGCACGCTT
837 CCCGATC-GATTCCCGGCTTGCACATCCTGCCCCTCTAGCCCGCTGAACGCCTGCACGCTT
7165 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GCAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCA
* * *
7229 GTCTAAGATCGGACCGGA-TCGAGGGTTACGGGTGCAAATGCTAGGCTCGGGCATGTGCTGGTGC
66 GTCTAAGATCGGACCAGACT-GAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGC
* *
7293 CGCATTTTTTTTCGCCCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACAGGCGGCGTTA
130 CGCATTTTTTTTCGCCCGGGGCACCATCG-CG-AGCATCACCGGAGAACCTGAC-GACGGCATTA
* *
7358 GTGTTCCGACGATTGGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACT
192 G-GTTTCGACGATTGGGGGGGCCGG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
7423 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
255 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
7488 TTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
320 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
7553 ATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
385 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * *
7618 ACAAGGATTACGTCTACCAAGTTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATTTTG
450 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
* * *
7683 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAACACAAGTCGTCTTGCCCTGAAACTTCACA
515 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACA
7748 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
580 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* *
7813 ATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGCCTCTCTG
645 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *
7878 GCCGACGTGGTGCC-CACCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
710 GCCGACGTAGTGCCGCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * * * *
7942 CAGTCTAAGATTGGACCGGACCGAGGGTTGTGATAGTAGGATCAACAGCACGTAGAGGGGGACCT
775 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * *
8007 GATCGATCCCCGGCTT-CAGCATCCTGCACCACTAGCCGGCTGAACGCCTGCACG-TT
840 GATCGATTCCCGGCTTGCA-CATCCTGCCCCTCTAGCCCGCTGAACGCCTGCACGCTT
* * *
8063 CGTTTCAAGGGTTGACTTAGGCGTACGGAG-TCATTCCC-GATCTAAGCATACGGAGTTCATTCC
1 -GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATACGCAGTTCATTCC
* *
8126 CAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCTGCACATGCTAGGCTCGGGCATGTGCTGGTG
64 CAGTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTG
* * * *
8191 CCACATTTTTTTTTGTCCGAGGCACCATCGC
129 CCGCATTTTTTTTCGCCCGGGGCACCATCGC
8222 CGGAGAACCT
Statistics
Matches: 1725, Mismatches: 185, Indels: 83
0.87 0.09 0.04
Matches are distributed among these distances:
890 1 0.00
891 82 0.05
892 435 0.25
893 222 0.13
894 38 0.02
897 2 0.00
898 24 0.01
899 260 0.15
900 5 0.00
901 3 0.00
902 48 0.03
903 386 0.22
904 209 0.12
905 5 0.00
906 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCA
GTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
GCATTTTTTTTCGCCCGGGGCACCATCGCGAGCATCACCGGAGAACCTGACGACGGCATTAGGTT
TCGACGATTGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGT
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACATGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGAC
GTAGTGCCGCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGA
TTCCCGGCTTGCACATCCTGCCCCTCTAGCCCGCTGAACGCCTGCACGCTT
Found at i:8126 original size:26 final size:25
Alignment explanation
Indices: 8086--8134 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
8076 GACTTAGGCG
8086 TACGGAGTCATTCCC-GATCTAAGCA
1 TACGGAGTCATTCCCAG-TCTAAGCA
8111 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAG-TCATTCCCAGTCTAAG
8135 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.32
26 14 0.64
27 1 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (25 bp):
TACGGAGTCATTCCCAGTCTAAGCA
Found at i:10590 original size:26 final size:26
Alignment explanation
Indices: 10554--10606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10544 GTTCACTTAG
10554 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10580 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10606 G
1 G
10607 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11491 original size:26 final size:26
Alignment explanation
Indices: 11455--11507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11445 GTTGACTTAG
*
11455 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11481 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11507 G
1 G
11508 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11982 original size:894 final size:891
Alignment explanation
Indices: 9386--15222 Score: 6957
Period size: 894 Copynumber: 6.6 Consensus size: 891
9376 TCATCTTGCC
* *
9386 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * *
9451 GCCGGCGTAGTGCCCGCCTGCCCGCTCGCCTGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACG
66 GCCGGCGTAGTG--C-CC-GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * * * *
9516 GAGTTCATTCCCAGTCTAAGATCAGACTGGATAGAGGGTTATGGCAA-CAAGATTGGCAGCACGC
123 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCG-AAGCAGGATCGACAGCACGC
* * * * * * * ** * *
9580 TGAGAGGGACCCGACCGATCCTCGGCTTGTGCATCTTGGCCCTTTGGCC-GAAGAGCACCCACAC
187 TGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
9644 GCCCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACGGAGTTCATT
252 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
9709 CCCAGTCTAAAATCAGACCAGATCGAGGGTTGTGGGTGCACATGCTAGGCTTGGGCATGTGCTGG
317 CCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
9774 TGCCGCATTGTCTTTCG-CCAGGGGCACCATCA--TCGGAGAACCTGATCGACGGCATTGGGCTT
382 TGCCGTATT-TTTTTCGCCCA-GGGCACCATCATCTCAGAGAACCTGACCGACGGCATTGGGGTT
* * * * *
9836 CCGACGATCGGGGGGGCGG-GAGGG-GTGCTCACATGATATGTGATGGGTGCTGGTACTTGGCCC
445 CCGACGATTGGGGGGG-GGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
9899 TTATATTGGCCCCCTATCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGTGCATTTGAG
509 TTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
9963 ATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGT
573 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
10028 CACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCTTGCTAAAAAAATACAAGG
638 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGG
* * *
10093 ATCACATCTCCCAAGTTTGGGGCCAAAACTACTTTTG-AAAAATTTTAAAAAAATC-CAAACCGT
703 ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGT
* *
10156 AAAAAGTTTCAAAAATCGA-GAAAAATAGAAAATGAGTCATCTTGCAATGAAACTTCACATGAA-
768 AAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAG
*
10219 GATTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
832 GCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
10280 ATGAAGATGTGCCTAAACCTACCTACAACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* ** * * *
10345 GCTGGCGTAGTGCCCGCCCGCCCGCTTGTTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * * *
10410 TGCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTAGGATCGACAGCACGCAGAGGAGGA
131 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGACAGCACGCTGAGGGGGA
* * * * * * *
10475 CCTGACCAATCCCCGGCTTGCGCATCCAGCCCCTCTGGCTGGCTGAGCGCCAGTACGCTCGTTTC
196 CCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
10540 GTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTA
261 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * *
10605 AGATCGGACTGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATT
326 AGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
* * * *
10670 TTTTCTCACCC-GGGCCACTATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
391 TTTT-TCGCCCAGGG---C-A-C--C--ATCATC-TCAGAGAACCTGACCGACGGCATTGGGGTT
* * *
10734 CCGACGATT--GGGGGGGCGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCT
445 CCGACGATTGGGGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
10797 TACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGTATTTGATAT
510 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
10862 TTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGACACTTTTTTCAAATGGTCA
575 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
10927 CAAAATCCTCTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
640 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGA
** * * * * *
10992 TCATGTCTACCAAGTTTAGGGG-CAAAAATCCATCTGAAAAAAATTTAAAAAAATCCCAAACTGT
704 TCACATCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGT
*
11056 AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGG
768 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGG
11121 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
833 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * * * *
11180 ATGAAGATTTTCCTAAACTCACCTACCACCCTATCGATCCACGGCTTACGGATCCCACCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * * * *
11245 GCCAGCATACTACCCGCCCCCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
11310 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGACAGCACGCTGAGGGGGG
131 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGACAGCACGCTGA-GGGGG
* * * * * *
11375 ACCCGGCCGATCCCCAGCTTGCCCATCCTGCACCTTTGGCCGGCTGAGCACTCGCACGCTCGTTT
195 ACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
11440 CTTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCT
260 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** *
11505 AAGATCGGACCAGATCGAGGGTTGCGGGTGCACATAATGGGCTCGGGCATGTGCTGATGCCGTAT
325 AAGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * *
11570 TTTTTTAGCCCAGGGCACCATCA-C-CAGAGAACCTGACCGACAGCATTGGGGTTCCGATGATTG
390 TTTTTTCGCCCAGGGCACCATCATCTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-
* *
11633 GGGGGCGAGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTT
454 GGGGG-G-GGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
11698 GCCTCGTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAG
517 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
11763 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTGCAAATGGTCACAAAATC
582 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
11828 CTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACATCT
647 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACATCT
* **
11893 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAATCTGGAACCGTAAAAAGTT
712 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAAATCTCAAACCGTAAAAAGTT
* *
11958 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGG
776 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
*
12023 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
841 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
*
12074 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * ** **
12139 GCCGACGTAGTGCCCGCCCGTCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * * *
12204 TTCCAGTCTAAGATCAGACCAAACCAAGGATTGTAGCAGTAGGATC-AGCAGCATGCTGAAGGGG
131 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGA-CAGCACGCTGAGGGGG
* * * * * *
12268 ACCCAGCTGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGACTGAGCACCCGCACGCTAGTTT
195 ACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
12333 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
260 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
12398 AAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTTGGGAATGTGTTGGTACCGTAT
325 AAGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-
* ** *
12463 TTTTTTTCGCAC-GGGCCACCATTGCTCAAGCATCGTCAGAGAACCTGACCGATAGCTTTGGGGT
389 TTTTTTTCGCCCAGGG-CACCA----T----CATC-TCAGAGAACCTGACCGACGGCATTGGGGT
* * * * *
12527 TCC-AGCGATTGGGGGGGCCGAGAGGGGGTATGTGTAGATCATGTGCGATGGGTGCTGGTACTTG
444 TCCGA-CGATTGGGGGGG--G-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
**
12591 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTT
505 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
*
12656 GAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
570 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
12721 GGTCACAAAATCCTCTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCCATA-AAAATA
635 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCA-ACAAAATA
* * * *
12785 AAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAACAAA-TTTAAAAAAATC-CTG
698 CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-A
* * *
12848 AACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACA
762 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACA
12913 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
827 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * * * * *
12978 ATGAAGATCTACCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGTATCCCGTCTCTCAG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * *
13043 GCTGGCGTAGTGCCCGCTCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * *
13108 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGT-G--GCA-G-T----AG---GCTGAGGGGGT
131 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGACAGCACGCTGAGGGGGA
* * * * * * *
13161 CTCGGACGATCCCTGGCTTGTGCATCCTACCCCTCTGGCCAGCTGAGTGCCCGCACGCTCGTTTC
196 CCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
13226 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--
261 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * ** *
13275 --A---GA-C---T-GAGGGTTACGGATGCACATGCTGAGCTCGACCATGTGCTGGTGTCGTATT
326 AGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-T
* * * **
13330 TTTTTTCGCCCGGGGGACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCATT-GGGTTC
390 TTTTTTCGCCC-AGGG--CA-C--C--ATCATC-TCAGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
13394 CTACAATTGGGGGGGCGAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
446 CGACGATTGGGGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
13459 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
511 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
13523 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTTCAAATGGTCAC
576 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * ** *
13588 AAAATCCTATAAACTTTGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
641 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAATACAAGGAT
* * * * *
13653 CACGTCTACCAATTTTGGGGCCAAAACTCCTTC-AAAACAAATTTTAAAAAAATC-CTGAATCGT
705 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA-AAATTTTAAAAAAATCTC-AAACCGT
* * *
13716 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGG
768 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGG
13781 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
833 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* ***
13840 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTTACCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * *
13905 GCCGACGTA--G--CGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * ** * *
13966 TCCCAGTCTAAGATTGGATC-AGACCAAGGGTTG-CGGCAGCAGGATCGGTAGCACACAGAGGGG
131 TCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTC-GAAGCAGGATCGACAGCACGCTGAGGGG
*** * * * *
14029 GACCCAATCGATCCCCGGCTTACGCATCCTACCCCTC-AGCCGGCTAAGCGCCCGCACGCTCGTT
194 GACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
14093 TCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTC
259 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** *
14158 TAA-ATCAGACCGGA-CTGAGGGTTGTGGGTGCACAAACTGGGCT-GGCCATGTGCTGGTGCCGT
324 TAAGATCGGACCAGATC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
* * * * *
14220 ATTTTTTTCGCTCGGGGCACCATCA---CAGAAGAACCTGACCGACGGCATTAGGGTTCTGGCGA
388 ATTTTTTTCGCCCAGGGCACCATCATCTCAG-AGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
14282 TT-GGGGGGGCAGCGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTGTATTG
452 TTGGGGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
14346 GCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
517 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
14411 GTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
582 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
14476 CTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCA-AGT
647 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACA-T
* * * *
14540 CTACCAAGTTTTGGGACAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGT
710 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGT
* ** * *
14605 TTCAAAAATCATGAAAAATAGAGAACGAGTCATCTTGATATGAAACTTCATATGAAGGCATAAGG
775 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* *
14670 GACCATTGTATGAATTTACAAGCAATAAAAATGGCACTGGCATGGCAGAAAT
840 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
14722 ATGGAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * *
14787 GCCGGCATAGT-------C-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGGTCAT
66 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * * * *
14844 TCCCAGTCAAAGATTGGACC-AGA-TGAGGGTT-ACGATAGTAGGATCAACAGCACACAGAGGGG
131 TCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTCGA-AGCAGGATCGACAGCACGCTGA-GGG
* * * * * * *
14906 GGACCTGGTCGATCCCCGGCGTACGCATCCTACCCCTCTGGCTGGCTGAGCGCCCGCAGGCTCGT
193 GGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
14971 TTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
258 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * ** *
15036 CTAAGATCAGA-CTGAACTGAAGGTTACGGGTGTACATGCTATGCTCGGGCATGTGCTGGTGCCA
323 CTAAGATCGGACCAGATC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * * *
15100 CATTTTTTCTCACCTAGGCCACCATCGCTGGAGCATCGCCAGAGAAGCTGATCGGCGGCAATGGG
387 TATTTTTT-TCGCCCAGGGCACCA----T----CATC-TCAGAGAACCTGACCGACGGCATTGGG
* * *
15165 GTTCCGACGATTGGGGGGGCCG-GGGGGTGTGCACTCATGATGTGCGATGGGTGCTGGT
442 GTTCCGACGATTGGGGGGG-GGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
15223 CATTAAAGTG
Statistics
Matches: 4279, Mismatches: 525, Indels: 278
0.84 0.10 0.05
Matches are distributed among these distances:
858 74 0.02
859 1 0.00
860 6 0.00
861 177 0.04
862 285 0.07
863 1 0.00
865 18 0.00
866 74 0.02
867 2 0.00
868 3 0.00
869 66 0.02
870 40 0.01
871 2 0.00
872 2 0.00
873 1 0.00
874 2 0.00
876 2 0.00
877 25 0.01
878 99 0.02
879 89 0.02
880 29 0.01
881 133 0.03
882 387 0.09
883 5 0.00
884 3 0.00
885 2 0.00
886 127 0.03
887 137 0.03
888 5 0.00
889 40 0.01
890 10 0.00
891 10 0.00
892 123 0.03
893 273 0.06
894 654 0.15
895 7 0.00
896 10 0.00
897 200 0.05
898 74 0.02
899 23 0.01
900 287 0.07
901 185 0.04
902 3 0.00
903 3 0.00
904 284 0.07
905 241 0.06
906 54 0.01
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTCGAAGCAGGATCGACAGCACGCTGAGGGGGA
CCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
TTTTTCGCCCAGGGCACCATCATCTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGG
GGGGGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACATCTACCA
AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
Found at i:12377 original size:26 final size:26
Alignment explanation
Indices: 12348--12400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12338 GTTGACTTAG
*
12348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12374 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12400 G
1 G
12401 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14139 original size:26 final size:26
Alignment explanation
Indices: 14109--14160 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14099 GTTGACTTAG
14109 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14135 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14161 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14579 original size:882 final size:879
Alignment explanation
Indices: 13240--15047 Score: 2547
Period size: 882 Copynumber: 2.0 Consensus size: 879
13230 GTTGACTTAG
* * * ** * ** *
13240 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGATGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGGTGCACAAACTGGG
* * * * *
13305 CTCGACCATGTGCTGGTGTCGTATTTTTTTTCGCCCGGGGGACCATCGTCGGAGCATCATCGGAG
66 CT-GGCCATGTGCTGGTGCCGTA-TTTTTTTCGCTC-GGGG--CA-C--C--ATCA-CA--GAAG
**
13370 AACCTGACCGGTGGCATTGGGTTCCTACAATTGGGGGGGCGAGGGGATGTGCGCACATGATGTGC
118 AACCTGACCGACGGCATTGGGTTCCTACAATTGGGGGGGCGAGGGGATGTGCGCACATGATGTGC
*
13435 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
183 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
13500 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACTGG
248 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
13565 GGACACTTTTTTCAAATGGTCACAAAATCCTATAAACTTTGAGTTTTTAGCCAAATTTTTTTGTG
313 GGACACTTTTTTCAAATGGTCACAAAATCCTATAAACTTCGAGTTTTTAGCCAAATTGTTTTGTG
* *
13630 CATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCAAAACAAAT
378 CATGCCAAAAAAAATACAAGGATCAAGTCTACCAATTTTGGGGACAAAACTCCTTCAAAACAAAT
** * * *
13695 TTTAAAAAAATCCTGAA-TCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
443 TTTAAAAAAATCCCAAACT-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* * *
13759 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
507 GACATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
* *
13824 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
572 CTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
** *
13889 GCATCTTACCTCTCTGGCCGACGTAG-CGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGC
637 GCATCCCACCTCTCTGGCCGACATAGTC-CCCGCCCG--C--TCATTTCGTCGGTTGGCTTAGGC
* * * * * ***
13953 ATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTTGCGGCAGCAGGATCGGTAGC
697 ATACAGAGGTCATTCCCAGTCAAAGATTGGACCAGA-CAAGGGTTACGACAGCAGGATCAACAGC
*
14018 ACACAGA-GGGGGACCCAATCGATCCCCGGCTTACGCATCCTACCCCTC-AGCCGGCTAAGCGCC
761 ACACAGAGGGGGGACCCAATCGATCCCCGGCGTACGCATCCTACCCCTCTAGCCGGCTAAGCGCC
*
14081 CGCACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
826 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
14135 GCATATGGAGTTCATTCCTAGTCTAA-ATCAGACCGGACTGAGGGTTGTGGGTGCACAAACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGGTGCACAAACTGGG
14199 CTGGCCATGTGCTGGTGCCGTATTTTTTTCGCTCGGGGCACCATCACAGAAGAACCTGACCGACG
66 CTGGCCATGTGCTGGTGCCGTATTTTTTTCGCTCGGGGCACCATCACAGAAGAACCTGACCGACG
* * *
14264 GCATTAGGGTT-CTGGCGATTGGGGGGGC-AGCGGG-TGTGCGCACATGATGTGTGATGGGTGCT
131 GCATT-GGGTTCCT-ACAATTGGGGGGGCGAG-GGGATGTGCGCACATGATGTGCGATGGGTGCT
* *
14326 GGTACTTGGCCCTTGTATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAA
193 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAA
*
14391 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
257 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * ** *
14456 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
322 TTTCAAATGGTCACAAAATCCTATAAACTTCGAGTTTTTAGCCAAATTGTTTTGTGCATGCCAAA
*
14521 AAAAATACAAGGATCAAGTCTACCAAGTTTT-GGGACAAAACTCCTTCTGAAA-AAATTTTAAAA
387 AAAAATACAAGGATCAAGTCTACCAA-TTTTGGGGACAAAACTCCTTC-AAAACAAATTTTAAAA
* *
14584 AAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCATCTTGATATGAA
450 AAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAA
*
14649 ACTTCATATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCACTGGCATG
515 ACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCACTGGCATG
* ** *
14714 GCAGAAATATGGAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
580 GCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCA
* * **
14779 CCTCTCTGGCCGGCATAGTCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGGTCAT
645 CCTCTCTGGCCGACATAGTCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGGTCAT
** * *
14844 TCCCAGTCAAAGATTGGACCAGATGAGGGTTACGATAGTAGGATCAACAGCACACAGAGGGGGGA
710 TCCCAGTCAAAGATTGGACCAGACAAGGGTTACGACAGCAGGATCAACAGCACACAGAGGGGGGA
*** * * * * *
14909 CCTGGTCGATCCCCGGCGTACGCATCCTACCCCTCTGGCTGGCTGAGCGCCCGCAGGCTCGTTTT
775 CCCAATCGATCCCCGGCGTACGCATCCTACCCCTCTAGCCGGCTAAGCGCCCGCACGCTCGTTTC
* *
14974 GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15014 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
15048 TGAACTGAAG
Statistics
Matches: 815, Mismatches: 87, Indels: 37
0.87 0.09 0.04
Matches are distributed among these distances:
877 26 0.03
878 90 0.11
879 85 0.10
880 8 0.01
881 102 0.13
882 398 0.49
883 11 0.01
884 3 0.00
886 1 0.00
888 1 0.00
889 2 0.00
891 4 0.00
892 11 0.01
893 18 0.02
894 32 0.04
895 23 0.03
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGGTGCACAAACTGGG
CTGGCCATGTGCTGGTGCCGTATTTTTTTCGCTCGGGGCACCATCACAGAAGAACCTGACCGACG
GCATTGGGTTCCTACAATTGGGGGGGCGAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCCTATAAACTTCGAGTTTTTAGCCAAATTGTTTTGTGCATGCCAAAAAAA
ATACAAGGATCAAGTCTACCAATTTTGGGGACAAAACTCCTTCAAAACAAATTTTAAAAAAATCC
CAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAAACTTCA
CATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCACTGGCATGGCAGAA
ATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCACCTCTC
TGGCCGACATAGTCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGGTCATTCCCAG
TCAAAGATTGGACCAGACAAGGGTTACGACAGCAGGATCAACAGCACACAGAGGGGGGACCCAAT
CGATCCCCGGCGTACGCATCCTACCCCTCTAGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15024 original size:26 final size:26
Alignment explanation
Indices: 14988--15040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14978 GTTGACTTAG
*
14988 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15040 G
1 G
15041 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15820 original size:26 final size:26
Alignment explanation
Indices: 15791--15843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781 GTTGACTTAG
*
15791 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15843 G
1 G
15844 ATCGAACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16728 original size:25 final size:26
Alignment explanation
Indices: 16693--16744 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16683 GTTGACTTAG
* *
16693 GCATACGGAGTTCATTGCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16719 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16744 G
1 G
16745 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18444 original size:878 final size:875
Alignment explanation
Indices: 15223--28232 Score: 13393
Period size: 889 Copynumber: 14.7 Consensus size: 875
15213 GGGTGCTGGT
* * * *
15223 CATTAAAGTGTCTGAAATAGGGACACTTTTTACTAATGGTCACAAAATCCTGTACACTTCCAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * * *
15288 TTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATTTACCAAGTTTGGGACC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
15353 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCTCAAATCGTAAAAAGTTTCAAAAATCGTGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
15418 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCATGAAGGCTTAAAGAACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
15483 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** * * * *
15548 CTATCGATCCATGTCTTGCGCATCTTGCCTCTC-GGTCGACGTAGTGCCCGCCCGCCTACCCACT
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
* * *
15612 CGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGG
391 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * * *
15677 TTGCGGTAGTAGGATCGGCAGCACGCTGAGGGAGACTCGATCGATCCCC-AGCTTGTGCATCCTG
456 TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGA-CTTGCGCATCCTG
* * * * * *
15741 CCCCTCTGGCTGGCTGAGTGCTCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACAGAGTTTAT
520 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
15806 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGGACCAAGGGTTGCGGGTG
585 TCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA-C---C--G----AGGGTTGCGGGTG
* * * * *
15871 CACATGCTAGGCTTGGGCATGTGCTGATGTCGCATTTTTTTT-GCCCGGGGCACCATCGCCGGAG
624 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGCC-GAG
* * * ** ** * * *
15935 CATCGTCGGAGAACATAACCGACAGCATTGGGGTTCCGGTGATTGAAGGGGTCGGCGGGTGTGGG
688 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCG
* * *
16000 CACATTATGTGCAATGGGTACAT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
753 CACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
16064 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGC
817 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
16123 CGTTAAAGTGTTTGAACTGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCCAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
*
16188 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * * *
16253 AAAACTCCTTCTGAAAATTTTTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCATGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
16318 ATAGAAAACGACTCGTCTTGCCATGTAACTTCGA-ATGAAGGCTTAAGGGACCATTGTATGAATT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACATGAAGGCTTAAGGGACCATTGTATGAATT
*
16382 TACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
260 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * ** *
16447 CCTATCGATCCATGGCATGCGCTTCCCGCCTCTCTGGCAGGCGTAGTGCCTGTTCGTCTGCCCGC
325 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* * * * **
16512 TCGTTTCATCGGTTGGCTTATGCATACAGAGTTCATTCCTAGTCTAAGATTAGACCAGACTGAGG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGG
* * * * * * *
16577 GTTGCAGTAGTAGGATTGGCAGCACACAGAAAGGGG-CCCGATCGATCCTC-AGCTTGCGCATCC
455 GTTGCGGTAGCAGGATCGGCAGCACGCTG-AGGGGGACCCGATCGATCCCCGA-CTTGCGCATCC
* * * *
16640 TACCCCTCTGGCTGGTTGAGCACCCAGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTT
518 TGCCCCTCTGGCTGGCTGAGCGCCC-GCACGCTCGTTTCGT-GG--G--TT--G---AC----TT
* *
16705 CATTGCCAGTGTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGG
568 -A--GGCA---T-A-C---GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGG
* * * * *
16770 TGCACATGCTGGGCTCGAGCATGTGCTGGTACCGTATTTTTTTTCGCTTGGGGCACCATCGTCGG
622 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCG-CCG
* * *** *
16835 AGCATCGTCGGAGAATCTGACCGGCGGCATTGGGGTTCCGTTAATTAGGGGGGCC-GGGGG-GTG
686 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTG
* * *
16898 CACACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
751 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
16963 CTCGAAAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
816 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
17023 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCCTATACACTTTGGGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * * *
17088 TTTAGGTGAATTTGTTTATGCATGCCCACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** *
17153 AAAACTCCTTCTGAAAAAA-TTTAAAAAATTAC-CGAATCGTAAAAAGTTTTGAAAATCGTAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
17216 AATAAAAAACGAGTCATCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* *
17281 TACAAGTCATAAAAATGGCATTAGCGCA--GCAGAAACATGAAGATGTGCCTAAACCCACCTACC
260 TACAAGCCATAAAAATGGCATT-G-GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
17344 ACCATATCGATCCACGGCATCCGTATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCC
323 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCC
* * * *
17409 GCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAATCTAAGATCGGACCAGACTGA
388 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGA
** * * * * ** *
17474 GGGTTGCAATAGTAGGATCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGGCTTGCATAACC
453 GGGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCC
** * * * *
17539 TATCCCTCTGG-TCGGCAGAGCGCCCGCAAGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
518 TGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
17603 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGAGTGCACATGCTGGGCTCGGGCATTTG
582 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * * *
17668 CTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGCCTGAGAATCATTGGAGAACCTGACCGAC
647 CTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACCGAC
* * *
17733 AGCATTGGGGTTTCGACGATTGGGGGGGCCGGAAGGGGTGTGCGCACATTATGTGCGATGGGTGC
711 GGCATTGGGGTTCCGACGATTGGGGGGGCCGG--GGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
17798 TGGTACTTGGCCCTTATATTGGCCCCATATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAA
774 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
17863 AGAGCATTTGAGATTTTACATGTTTGCTTCCAGTAGC
839 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
17900 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * *
17965 TTTAGCTTAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAATTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
18030 AAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
18095 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGGATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
18160 ACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCTAGCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
18225 CTATCGATCCACGTCTTACGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACT
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
* * *
18290 CGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCAATCTAAGATCGGACCAGACTGAGGG
391 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * *
18355 TTGTGGTAGCAGGATCGGCAGCACACTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGC
456 TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
** * * * * *
18420 CCCAGTGGCTGGCTGAGTGCCCGCACGGTCATTTTGTGGGTTGACTTAGGCATACGTAGTTCATT
521 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* *
18485 CCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCTGGTGC
586 CCCAGTCTAAG-AT-C--AG---------A--C------CGGA-C---C-GAGGGTTGCGGGTGC
** * * * *
18550 ACATGCTGGGCTCGGGCATGTGCTGGTGTTGCATTTTTTTTCTCCCGAGGCACCATCGTCGGAGC
625 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCG-CCGAGC
*
18615 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGCCAGGGGGGTGTGCG
689 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCG
18679 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
753 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
18744 CGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
818 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
18801 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
*
18866 TTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
66 TTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
18930 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAA
130 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
18995 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
** *
19060 TACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAA
260 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * * *
19125 CCTATCGATCCACGGCTTGTGTATCCCGCCTCTTTGGTCGGCGTTGTGTCCGCCAGCATGCCCGC
325 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* *
19190 TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCGAG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACTGAG
* * ** * * ** *
19254 GGTTGTGGTAGTAGGATCAACGGCATGCTGAGGGGGACCCGA-CTGATCTGCGACTTACGCATCC
454 GGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATC-GATCCCCGACTTGCGCATCC
* * * *
19318 TGCCCCTCTGGCCGGCTGAGAGCCCGGACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTC
518 TGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
19382 ATTCCCAATCTAAGCATACAGAGTTCGTTCCCAGTCTAAGACCGGACCTGACCGAGGGTTGCAGG
583 ATTCCC-A-GT---C-T--A-A----G-----A-TC--AGACC-G----GACCGAGGGTTGCGGG
* * * * * *
19447 TGCACATACTGAGCTTGGGCATGTGCTGGTGCCGGC-TTTTTTTTC-ACTCGGGCCACCATCACC
622 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTTTTCGCCT-GGGGCACCATCGCC
** * * *
19510 GAAGCATCACCAGAGAACCTGACC-AGCGGCATTAGGGTTCCGACGATTGGGGGGGCC-AGGGG-
685 G-AGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGT
* ** * ** *
19572 GTGCACACATGATGTGCGATGGGTGCTGGTACTTTTCCTTTATATTGGCCCATTATCTCTCATCA
748 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
19637 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGC
813 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
19700 CATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATTGTCACAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
*
19765 TTTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
19828 AAAACTCCTTCTG-AAAAA-TTTAAAAAAATC-CTGAA-CGTAAAAAGTTTC-AAAATCGTGAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
19888 AATAGAAAAGGAGTCGTCTTCCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
*
19953 TACAAGCCAT-AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAACTACCAC
260 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-
* * * * * *
20017 CCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCGGCCCA
324 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG
* * * * * *
20082 CTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCATTATAAGATTGGATCAGA-TCGA
389 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GA
* * * ** * *
20146 -GGTTGTGGCAGTAGGATCAACAGCACGCTGAAGGGGACCCGATCGATCCCCGACTTGTGCATCC
453 GGGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCC
* * *
20210 TGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTT-GGCCATACGGAGTT
518 TGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG-CATACGGAGTT
* ** * *
20274 CATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTCCGGGTGCACATGCTAGGCTCGGGCATGTG
582 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* * * * *
20339 AC-GGTGCCGCACTTTTTTTCACCCGGGCCACCATCGCC--G-A-------AGAACCTGACCGGC
647 -CTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGAC
* *
20393 GGCATT-GGGTTCCGACGATT-GGGGGG-CGGGGGGTGTGCGCATC-TGATGTGTGATGGGTACT
711 GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCA-CATGATGTGCGATGGGTGCT
** * *
20454 GGTACTTGGCCCTTATATTGGCCCCCTATCATTCATCAAACCTCAAGAACTCACACCCTCTTAAA
775 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
20519 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGC
840 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
20555 CATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * *
20620 TTTAGCTGAATTTTTTTTATGCATGCCAATAAAAACACAAGGATCACGTCTACCAAGTTTGGGGC
66 TTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** *
20685 CAAAACTCCCTCTGAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATG-AA
130 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * *
20749 AATAGAAAACTAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGGCCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* ** * *
20814 TACAACCCATAAAAATGGTGTTGCCATGGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
260 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * ** * * * *
20879 CCTATCGATCCATGGCTTGCACATCTTGCCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGT
325 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* * **
20944 TCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACCT-AG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAG
* * * * * * * * *
21008 GGTTGAGGCAGCAGGATCGGTAGCACGTTGAGGGCGACCCGGTTGATCCCCGTCTTGCGCATCTT
454 GGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
*
21073 GCCCCTCTGG-TCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
519 GCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
21137 ATTTCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACATTACTGAGGGTTGCGGG
583 ATTCCCAGTCTAAG-AT-C--AG---------A--C------CGGAC----C-GAGGGTTGCGGG
* * * * *
21202 TGCACATGCTGGGCTCGGG-ATGGGCTGGTGCCGCA-TTTTTTTCACCCGGGCCACCCATCACCG
622 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCA-CCATCGCC-
* *
21265 GAGCATCGCCAGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGTG
685 GAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTG
* *
21328 TGTGCACATGATGTGCGAT-GG-G-T-G--C-TGG---TTATATTGGCCCACTATCCCTCATCAA
749 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
21383 ACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
814 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
21445 CATTAAAGTGTTTGAAATTGGGACAC-TTTTTCAAATGGTAACAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * *
21509 TTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCATGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
21574 AAAACTCCCTCTGAAAAAATTTTTAAGAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
21639 ATAGAAAACTAGTCGTCTTGCCATGAAACTTCACATGACGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
21704 ACAACCCATAAAAATGGTGTTGGCATGGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * * *
21769 CTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCTCGCCCGCCAGCT
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
* * ** * **
21834 CATTTCATCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCAAGGG
391 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* ** * * * *
21899 TTGCGGTAGTAGGATTAGCAGCACACTGAGGGTGACCCGACCGATCCCCGGCTTGCGCAT-CTGC
456 TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
** * * *
21963 CCCTCTGGCAAGCTGAGTGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
521 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
** * * ** * * * * *
22028 CTTAATCTAAGGAT-ATGGAGTTCGTTCCCAGTCTAAGTATACGAAGTTCATTCCCA-GTCTAAG
586 CCCAGTCTAA-GATCA--GA--CCGGACCGAG----GGT-TGCG-GGTGCA----CATG-CT--G
* * * *** * ** * *
22091 ATTGGAC-CGGACCGAGGGTTGCAGGTGCACATGCTAGGCTCTGGCATGTGCTGGTGTCGTATTT
633 ---GG-CTCGG-GC-A-TG-TGCTGGTGC-C--GC-ATTTTTTTTC--G-CCTGG-G--GCA---
* * * * *
22155 TTTTTCATCCGGGCC-ACCATCGTCGGAGCATC-G-CCAGA-GGC----GGGTGTGCGCAC-A-T
677 ----CCAT-C--GCCGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGT-TCCG-ACGATT
** * ** * * ** **
22210 -GATGTG-CGATGGGTGCTG-GTAC-T--TG-GC-------CCTTATA-TTGGCCC-CCTA-T--
732 GGGGGGGCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *** * * * * * * *
22256 CCCTC-ATCAAACCTCGAGAA-CTC----A--CAC-TCCCTTAAAGAGCA--TTTGAGA-T-TTT
796 CCCCCTATCCCTCATC-A-AACCTCGAGAACTCACACCCCCTTAA-AG-AGCATT-TGAGATTTT
*
22308 ATAGGTTT-CTTGCCAGTAGC
856 ACAGGTTTGC-TGCCAGTAGC
*
22328 CATTAAAGGGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * *
22393 TTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTATACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
22457 AAAAACTCCTTTTAAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTAAAA
131 -AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
22522 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
195 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
*
22587 TACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
260 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * ** *
22652 CCTATCAATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGACATAGTGCCCGCTTGCCTGTCCGC
325 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
** * * * *
22717 TCGTTTTTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCA-AATCAAG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAG
* * ** ** * *
22781 GGTTGCGGCAGCAGGATCGGTAGCATACTGAGGGGGACCCGATCGATCTTCGGCTTACGCATCCT
454 GGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
* *
22846 ACCCCTCTGG-TCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
519 GCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
22910 ATTCCCAGTCTAAGCATACGAAGTTCATACCTAGTCTAAGATTGGACAGCACCGAGGGTTACAGG
583 ATTCCCAGTCTAAG-AT-C--AG-----A-C----C--------G---G-ACCGAGGGTTGCGGG
* *
22975 TGCACATGCTGGGCTCGGGCATGTGCTGATGCCGCATTTTCTTTT-GCC-CGGG--CCA---CC-
622 TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TTTTCGCCTGGGGCACCATCGCCG
** * **
23032 ATTA-C--CGGAGAACCTGACCGACGGCATTGGGATTCCGGTGATT-GGGGGG-CGGGGGGTGTG
686 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTG
* *
23092 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCTTATCCCTCATCAAAC
751 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * ** *
23157 CTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAATTTTGCTGCCAGTACC
816 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
23217 CATTAAAGTGTTTGAAATGCGGACACTTTTTTCAAATGGTAACAAAATCATGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* *
23282 TTTAGCTGAATATTTTTT-TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
66 TTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
23346 CAAAACTCCTTCTGAAAAAATTTAAAAAAAATC-CTAAACTGTAAAAAGTTTCAAAAATTGTGAA
130 CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAA
*
23410 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAAT
194 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
*
23475 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAAATGTGCCTAAACCCACCTACCA
259 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * ** *
23540 TCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCTG
324 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG
* * * * **
23605 CTCATTTCATCAGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAG
389 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAG
* * * * * ** * *
23670 GGTTGGGGCAACAGGATCGACAGCACGTTGAGTTGGACCCGGTCGATCCCCGACTTGCGTATCCT
454 GGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
* * * * * *
23735 GCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTGTT-GTGTGTTGACTTTGGCATATGGAGTTC
519 GCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * **
23799 ATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCATGCATGTGC
583 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* * * * * *** * * * **
23864 TGCTGCCACATTTTTTTTCACCCGAGGCACCATCATTGGAGCATCGTCAGAGAACCTAACTGGTG
648 TGGTGCCGCATTTTTTTTCGCCTGGGGCACCATC-GCCGAGCATCGTCGGAGAACCTGACCGACG
* *
23929 GCATTGGGGTTCCGACGATTGGGGTGGCCGGGCGGGGTGTGCACACATGATGTGCGATGGGTGCT
712 GCATTGGGGTTCCGACGATTGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
23994 GGTACTTGGCTCTTATATTGGCCCCCTATCCCTCGTCAAACCTGGAGAACTCACACCTCCTTAAA
775 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
24059 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
840 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
24095 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCCTGTACACTTCTATTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * *
24160 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACATCTACCAAGTTTGGGGCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
24225 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAATTTGTGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
24290 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* *
24355 ACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCGACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * ** * *
24420 CT-TCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCTACCC-CCCGCCTGCT
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
** * * * *
24483 CGTTTTATCGATTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGG
391 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * ** * * ** * * *
24548 TTGGGGCAGCAGGATCTACAGCACACTAAGTTGGACTCAATCGATCCCCGACTTGCGTATCCTGC
456 TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
* * * * *
24613 ACCTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATT
521 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * * *
24678 CCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGGTGCACATACTGGGTTCAGGCATGTGCTGA
586 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
24743 TGCCGTATTTATTTTCACCTGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTAACCGACGGCA
651 TGCCGCATTTTTTTTCGCCTGGGGCACCATCG-CCGAGCATCGTCGGAGAACCTGACCGACGGCA
* * * * *
24808 TTGGGGTTCCGGCGATTGGAGGGGCCGGGTGGGGGTGTGCACACATGAT-TGCGGTGGGTACTGG
715 TTGGGGTTCCGACGATTGGGGGGGCC--G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
24872 TACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGA
777 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
24937 TCATTTTAGATTTTATAGGTTTGTTGCCAGTAGC
842 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
24971 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* *
25036 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG---A----T--C-A---T--GCCC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
25086 AAAA-TCCTTTTAAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
25150 ATAGAAAACGAGTCGTCTTGCCATTAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
** * *
25215 ACAAGCCATAAAAATGGCATTGGCATGATAGAAATATGAAGATCTGCCTAAACCCACCTACCAGC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** * * * **
25280 CTATCGATCCACAGCTTGTGCATCCCGCCTCTC-GATCGGCGTAGTGCCTGCCCGCCAGTCTACT
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
* * * *
25344 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGG
391 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
* * * * * * * * *
25409 TTACAGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCTGC
456 TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
*
25474 CCCTTTGG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
521 CCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
25538 TCCCAGTGTAAGCGTACGAAGTTCGTTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGAGTA
585 TCCCA--GT---C-T---AA----G-----A-TC--AGA-C----CGGACCGAGGGTTGCGGGTG
* *
25603 CACAAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTATTTTTT-GCCT-GGG---C-T-----AC
624 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT-TTTTTTCGCCTGGGGCACCATCGCCGAG
* * * * * * * *
25657 CATCGTCGGAGAACCTAACCGGCGGCATAT-TGGTTTCGATGATTGGAGGGG-CGGGGCGTCTGC
688 CATCGTCGGAGAACCTGACCGACGGCAT-TGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGC
*
25720 GCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
752 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
25785 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
817 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
25844 CATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCAC-AAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * * * * * **
25907 TTTGGATGACTTCTTTTGTGCATACCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGTAC
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
25972 AAAACTCCTTCTGAAAGAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTTAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
26037 ATATAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
*
26102 A-AAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
26166 CTATTGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGGGGTAGTGCCCACCTG-CTAGCCCGC
326 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGC
* * * * * * **
26230 TTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAAATTGGACCGGACCAAGG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGG
** * * * * **
26295 GTTGCGGTAGCAGGATCAACAACACGCTGAGGGGGACCCGATCGATCCTCGGCTTACGCATATTG
455 GTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTG
* * * * *
26360 CCCCTCTGGTTGGCTGAGCGCCCGCACGTTCATTTCGAGAGTTGACTTAGGCATACGGAGTTCAT
520 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** ** * ** * * * * * * *
26425 TCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCAGATAGGAC-CG-AGGGTTACGAG
585 TCCCAGTCTAAG-AT-C--AGACCGGACCGAGGGT-TG--CGGGT-GCACATGCTGGGCT-CG-G
** * * * * * *
26488 TGCACATGCTGG-GCTCGGGCA-----TGT-G-TTGGTG--CCGTCG--GAGCATCGCCAGAGAA
640 -GCATGTGCTGGTGC-C--GCATTTTTTTTCGCCTGGGGCACCATCGCCGAGCATCGTCGGAGAA
* * * * * * * *
26541 CCTGAACGGCTGG-ATTGGGGTTCGGGCGGTTGGAGGGG-C-GGGGG-GTGCG---ATG-GGTAC
701 CCTGACCGAC-GGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
26598 AATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCTCTATCCCTCATGAAACCTTGAGAACTCAC
765 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
26662 ACCCCTTTCAAGAGTATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
829 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
26709 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * *
26774 TTTAGCTTAATTTTTTTATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** *
26839 AAAACTCCTCCTGAAAAAATTTTAAAACAATCTCGAACCGTAAAAAGTTTCAAAAATTATAAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
26904 ATAGAAAACGAGTCGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
26969 ACAAGCCATAAAAAAGGCATTGGCATAGTAGAAATATGAAGATATGCCTAAACCCACCTACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
27034 C-ATTCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCTGACGCAGTGCCCGCCCGTCTGACCGC
326 CTA-TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* * * * * *
27098 TCGTTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCATTCTAAGATCAGAGCAGATTGAGT
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGG
* * * * *
27163 ATTGTGGTAGCAGGATTGGCAGTACGCAGAAAGGGACCTGGCCGATCCCAGGCTTGTGCATCCTG
455 GTTGCGGTAGCAGGATCGGCAGCACGCTG--A-GG----GG--GA--CC---C----G-AT-C-G
* * ** *
27228 ATCCTCTAGCCGATCCCAGGCTTGCGCATCC-GCATCCTGATCCTCTAGCCGGCAAAGCGCCCGT
499 AT-C-C---CCG-----A--CTTGCGCATCCTG---CC----CCTCTGGCTGGCTGAGCGCCCGC
*
27292 ACGCTCGTTTTGTGGGTTGACTTAGGCAAATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
545 ACGCTCGTTTCGT-GG--G---T-------T-GA---C--T--TAG-----GCATACGGAGTTCA
* * * *
27357 TTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGCTTGTGCT
584 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
** *
27422 GGTGCCTAATTTTTTTTC-CCTCGGGGCACAATCGCC--G----GT--GAG--CCTGACC-AGCG
649 GGTGCCGCATTTTTTTTCGCCT-GGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGA-CG
* * * *
27475 GCATTGGGATTCCGACGATTGGGGGGGCCGGGGGGCTATGAGCACATGATGTGCGATGGGTGCTA
712 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTG
* ** *
27540 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTTCCTCTTAAAG
776 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
27605 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGC
841 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
27640 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTT
1 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* *
27705 TTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-C
66 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * **
27769 AAAACTCCTTCTAAAAAAATTTT-TAAAAATCCCCATTCGTAAAAAGTTTCAAAAATCGTGAAAA
131 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
27833 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
196 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
*
27898 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACC
261 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * * * * *
27963 CTATCGATCCATGGCTT-CGGCATCCCGTCTTTTTGGTCGGCATAGTGCCCGCCCACCCGCACAC
326 CTATCGATCCACGGCTTGC-GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC
* * * *
28027 TCGTTTCCTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCGGATTGAG
390 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACTGAG
** ** * * * *
28091 GGTTGCGACAGCAGGATCGATAGCATGCTGAGGGGGACCCGATCGATCCTCGGCTTGCGTATCCT
454 GGTTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
* * * * * *
28156 ACCCCTCTGG-TAGGCTGAGCACTCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
519 GCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
28220 ATT-CCAGTCTAAG
583 ATTCCCAGTCTAAG
28233 CATACGGAGT
Statistics
Matches: 10243, Mismatches: 1343, Indels: 1085
0.81 0.11 0.09
Matches are distributed among these distances:
853 1 0.00
854 10 0.00
855 195 0.02
856 19 0.00
857 16 0.00
858 46 0.00
859 12 0.00
860 208 0.02
861 402 0.04
862 185 0.02
863 69 0.01
864 31 0.00
865 151 0.01
866 37 0.00
867 268 0.03
868 190 0.02
869 18 0.00
870 25 0.00
871 105 0.01
872 46 0.00
873 277 0.03
874 36 0.00
875 14 0.00
876 580 0.06
877 342 0.03
878 817 0.08
879 10 0.00
880 9 0.00
881 17 0.00
882 16 0.00
883 100 0.01
884 402 0.04
885 86 0.01
886 129 0.01
887 388 0.04
888 233 0.02
889 829 0.08
890 187 0.02
891 26 0.00
892 169 0.02
893 211 0.02
894 25 0.00
895 18 0.00
896 18 0.00
897 72 0.01
898 134 0.01
899 468 0.05
900 718 0.07
901 788 0.08
902 175 0.02
903 22 0.00
904 121 0.01
905 6 0.00
906 5 0.00
907 34 0.00
908 6 0.00
909 3 0.00
910 4 0.00
911 3 0.00
912 2 0.00
913 2 0.00
915 1 0.00
916 3 0.00
917 8 0.00
918 3 0.00
919 3 0.00
920 4 0.00
921 2 0.00
922 6 0.00
923 30 0.00
924 12 0.00
925 15 0.00
926 11 0.00
927 30 0.00
928 6 0.00
929 285 0.03
930 27 0.00
931 227 0.02
932 7 0.00
933 27 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG
TTGCGGTAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGC
CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTTTTCGCCTGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGC
Found at i:18506 original size:26 final size:26
Alignment explanation
Indices: 18469--18521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18459 GTTGACTTAG
*
18469 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
18495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
18521 G
1 G
18522 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19407 original size:26 final size:25
Alignment explanation
Indices: 19370--19421 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19360 GTTGACTTAG
19370 GCATACGAGTTCATTCCCAATCTAA
1 GCATACGAGTTCATTCCCAATCTAA
* *
19395 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAATCTAA
19421 G
1 G
19422 ACCGGACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAATCTAA
Found at i:21160 original size:26 final size:26
Alignment explanation
Indices: 21124--21176 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21114 GTTGACTTAG
21124 GCATACGGAGTTCATT-TCCAGTCTAA
1 GCATACGGAGTTCATTCT-CAGTCTAA
21150 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
21176 G
1 G
21177 ATCGGACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:22062 original size:26 final size:26
Alignment explanation
Indices: 22014--22090 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
22004 TGACTTAGGC
* ** *
22014 ATACGGAGTTCATTCTTAATCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
* * * *
22040 ATATGGAGTTCGTTCCCAGTCTAAGT
1 ATACGAAGTTCATTCCCAGTCTAAGG
22066 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
22091 ATTGGACCGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:22934 original size:26 final size:26
Alignment explanation
Indices: 22897--22949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22887 GTTGACTTAG
* *
22897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
22923 GCATACGAAGTTCATACCTAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
22949 G
1 G
22950 ATTGGACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:25566 original size:26 final size:26
Alignment explanation
Indices: 25526--25575 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25516 GACTTAGGCA
* *
25526 TACGGAGTTCATTCCCAGTGTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
25552 TACGAAGTTCGTTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
25576 ATCAAATCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:26252 original size:887 final size:886
Alignment explanation
Indices: 24662--28291 Score: 4110
Period size: 887 Copynumber: 4.1 Consensus size: 886
24652 GTTGACTTAG
* * * * * * *
24662 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGGTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAGTGCACATGCTGGG
* * * *
24727 TTCAGGCATGTGCTGATGCCGTATTTATTTTCACCTGGGGCACCATCGTCGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCG-ATTT-TTTT-TCCT-GGGCACCA---TC---G---C--CAGAG
* * *
24792 AACCTAACCGACGGCATTGGGGTTCCGGCGATTGGAGGGGCCGGGTGGGGGTGTGCACACATGAT
116 AACCTAACCGGCGGCATT-GGGTTCCGACGATTGGAGGGGCC--G-GGGGGTGTGCGCACATGAT
* * * *
24857 -TGCGGTGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACT
177 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * * * *
24921 CACACCCCCTTAAAGATCATTTTAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
242 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
24986 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
307 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
25051 TTGTGCATGCCAAAAAAAATACAAGGATCA----TGCC----------CAAAA-TCCTTTTAAAA
372 TTATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTAAAA
* *
25101 AAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
437 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
25166 CTTGCCATTAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
502 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
25231 GCATTGGCATGATAGAAATATGAAGATCTGCCTAAACCCACCTACCAGCCTATCGATCCACAGCT
567 GCATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
* ** * * * *
25296 TGTGCATCCCGCCTCTC-GATCGGCGTAGTGCCTGCCCGCCAGTCTACTCATTTCGTCGGTTGGC
632 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGGTTGGC
* * * * *
25360 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACAGCAGTAGGATT
697 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* *
25425 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC-TCATCCTGCCCCTTTGGTCGGCTG
762 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCATCATCCTGCCCCTCTGGTCGGCTG
*
25489 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
827 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
25549 GCGTACGAAGTTCGTTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGAGTACACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAGTGCACATGCTGGG
* *
25614 CTCGGGCATGTGCTGGTGCCGCATTATTTTTTGCCTGGGCTACCATCGTCGGAGAACCTAACCGG
66 CTCGGGCATGTGCTGGTGCCG-ATT-TTTTTT-CCTGGGC-ACCATCGCCAGAGAACCTAACCGG
* * * * * *
25679 CGGCATATTGGTTTCGATGATTGGAGGGG-CGGGGCGTCTGCGCAAATGATGTGCGATGGGTGCT
127 CGGCAT-TGGGTTCCGACGATTGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
25743 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
191 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
25808 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TT
256 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * * *
25872 TTTCAAATGGTCAC-AAATCCTGTACACTTCGAGTTTTTGGATGACTTCTTTTGTGCATACCAAT
321 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAT
* * * *
25936 AAAAATACAAGGATCACGTCTACCATGTTTGGGTACAAAACTCCTTCTGAAAGAATTTTAAAAAA
386 AAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCTAAAAAAATTTTAAAAAA
** * *
26001 ATCTCGAACCGTAAAAAGTTTCAAAAATTGTTAAAAATATAAAACGAGTCGTCTTGCCATGAAAC
450 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
26066 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA-AAGCCATAAAAATGGCATTGGCACGGC
515 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* *
26130 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCATCCCGCC
580 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCC
* * * * * * *
26195 TCTCTGGCCGGGGTAGTGCCCACCTGCTAGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
645 TCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
26260 GTTCATTCCCAGTATAAAATTGGACCGGACCAAGGGTTGCGGTAGCAGGATCAACAACACGCTGA
710 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * *
26325 GGGGGACCCGATCGATCCTCGGCTTACGCAT-AT--TGCCCCTCTGGTTGGCTGAGCGCCCGCAC
775 GGGGGACCCGACCGATCCCCGGCTT--GCATCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAC
* * * *
26387 GTTCATTTCGAGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
26436 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGAT-AGGACCGAGGGTTACGAGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-GACCGAGGGTTGCGAGTGCACATGCTGG
* *
26500 GCTCGGGCATGTGTTGGTGCCG--------T-C--GG-AGCATCGCCAGAGAACCTGAA-CGGCT
65 GCTCGGGCATGTGCTGGTGCCGATTTTTTTTCCTGGGCACCATCGCCAGAGAACCT-AACCGGC-
* * * * * *
26552 GG-ATTGGGGTTCGGGCGGTTGGAGGGG-C-GGGGG-GTGCG---ATG-GGTACAATGGGTGCTG
128 GGCATT-GGGTTCCGACGATTGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
26609 GTACTTGGCCCTTATATT-GCCCCTCTATCCCTCATGAAACCTTGAGAACTCACACCCCTTTCAA
192 GTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
26673 GAGTATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
256 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
26738 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATTTTTTTATGCATGCCAAT
321 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAT
* * *
26803 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTCCTGAAAAAATTTTAAAACA
386 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCTAAAAAAATTTTAAAAAA
* * *
26868 ATCTCGAACCGTAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGAGTCGTCTTACCATGAAAC
450 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
26933 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATAGT
515 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* *
26998 AGAAATATGAAGATATGCCTAAACCCACCTACCACCC-ATTCGATCCACGGCTTGCGCATCCTGC
580 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTA-TCGATCCACAGCTTGCGCATCCCGC
* * * * * * * *
27062 CTCTCTGGCTGACGCAGTGCCCGCCCGTCTGACCGCTCGTTTCGTCGGTTGGCTGAGGCATACGG
644 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * ** ** * * * * *
27127 AGTTCATTCCCATTCTAAGATCAGAGCAGATTGAGTATTGTGGTAGCAGGATTGGCAGTACGCAG
709 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
27192 AAAGGGACCTGGCCGATCCCAGGCTTGTGCATCCTGATCCTCTAGCCGATCCCAGGCTTGCGCAT
774 --A-GG----GG--GA--CC---C----G-A-CC-GA-----T---C---CCC-GGCTT--GCAT
** * * ** * * *
27257 CCGCATCCTGATCCTCTAGCCGGCAAAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCAAA
804 ---CATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
27322 TGGAGTTCATTCCTAGTCTAA
866 CGGAGTTCATTCCCAGTCTAA
* * * * * *
27343 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAGTGCACATGCTGGG
* * * * * * * *
27408 CTCGGGCTTGTGCTGGTGCCTAATTTTTTTTCCCTCGGGGCACAATCGCCGGTGAGCCTGACCAG
66 CTCGGGCATGTGCTGGTGCC-GATTTTTTTT-CCT--GGGCACCATCGCCAGAGAACCTAACCGG
* * *
27473 CGGCATTGGGATTCCGACGATTGGGGGGGCCGGGGGGCTATGAGCACATGATGTGCGATGGGTGC
127 CGGCATTGGG-TTCCGACGATTGGAGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGC
* ** *
27538 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTTCCTCTTAA
190 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
*
27603 AGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
255 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
27668 TTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
320 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* *
27733 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTAAAAAAATTTT-TAAAA
385 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTAAAAAAATTTTAAAAAA
* * ** *
27797 ATCCCCATTCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
450 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
27862 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
515 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
** *
27927 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT-CGGCATCCCGT
580 AGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC-GCATCCCGC
* * * * * * * * *
27991 CTTTTTGGTCGGCATAGTGCCCGCCCACCCGCACACTCGTTTCCTCGGTTGGCTTAAGCATACGG
644 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
** * * * *
28056 AGTTCATTCCCAGTCTAAGAAT-GGACCGGATTGAGGGTTGCGACAGCAGGATCGATAGCATGCT
709 AGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * *
28120 GAGGGGGACCCGATCGATCCTCGGCTTGCGT-ATCCTACCCCTCTGGTAGGCTGAGCACTCGCAC
773 GAGGGGGACCCGACCGATCCCCGGCTTGCATCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAC
* * *
28184 CCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAA
838 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
28232 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGTGTGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAGTGCACATG
28292 ATGTGTGATG
Statistics
Matches: 2316, Mismatches: 321, Indels: 210
0.81 0.11 0.07
Matches are distributed among these distances:
864 5 0.00
865 128 0.06
866 20 0.01
867 200 0.09
868 179 0.08
869 4 0.00
870 6 0.00
871 98 0.04
872 35 0.02
873 134 0.06
875 7 0.00
876 37 0.02
877 4 0.00
879 2 0.00
881 1 0.00
882 1 0.00
884 2 0.00
886 100 0.04
887 467 0.20
888 2 0.00
889 67 0.03
890 56 0.02
894 4 0.00
896 5 0.00
897 3 0.00
900 3 0.00
901 10 0.00
903 1 0.00
905 2 0.00
907 136 0.06
908 2 0.00
909 1 0.00
910 1 0.00
911 1 0.00
915 1 0.00
916 1 0.00
918 3 0.00
920 2 0.00
922 10 0.00
923 33 0.01
924 1 0.00
925 5 0.00
926 2 0.00
927 4 0.00
928 1 0.00
929 275 0.12
930 27 0.01
931 222 0.10
932 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGAGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGATTTTTTTTCCTGGGCACCATCGCCAGAGAACCTAACCGGCGGC
ATTGGGTTCCGACGATTGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCTCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCAGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
CCCGACCGATCCCCGGCTTGCATCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:26446 original size:26 final size:26
Alignment explanation
Indices: 26410--26462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26400 GTTGACTTAG
26410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
26436 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26462 G
1 G
26463 ATCAGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:28236 original size:25 final size:26
Alignment explanation
Indices: 28207--28258 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
28197 GTTGACTTAG
28207 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
28232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
28258 G
1 G
28259 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:28995 original size:771 final size:773
Alignment explanation
Indices: 27516--30419 Score: 4167
Period size: 771 Copynumber: 3.8 Consensus size: 773
27506 GGGGCTATGA
*
27516 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
27581 TTGAGAACTCACTTCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAA
66 TCGAGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
27646 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTTTTTAGC
130 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
27711 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACT
195 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * **
27775 CCTTCTAAAAAAATTTT-TAAAAATCCCCATTCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
260 TCTTCTGAAAAAATTTTAAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
27839 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
325 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
27904 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCG
390 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * * * *
27969 ATCCATGGCTTCGGCATCCCGT-CTTTTTGGTCGGCATAGTGCCCGCCCACCCGCACACTCGTTT
455 ATCCACGGCTTCGGCATCCCATCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCACGCTCGTTT
* * * * *
28033 CCTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGAATGGACCGGATTGAGGGTTGCG
520 CATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGAACGGACCGGACTGAGGGTTGCG
* * * * *
28098 ACAGCAGGATCGATAGCATGCTGAGGGGGACCCGATCGATCCT-CGGCTTGCGTATCCTACCCCT
585 ACAGCAAGATCGACAGCATGCTGAGGTGGACCCGATCGATCCTCCGGCTTGTGCATCCTACCCCT
** * * *
28162 CTGGTAGGCTGAGC-ACTCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CC
650 CTGGCCGGCTGAGCGA-TCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCCC
* * *
28225 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGTGT
714 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGTGC
* * *
28285 GCACATGATGTGTGATGGGTGGTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
28350 TCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
66 TCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
28415 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGAGTTTTTGGC
130 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
28480 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
195 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
28545 TCTTTTGAAAAAATTTTAAAAAAATCCCCATCCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAA
260 TCTTCTGAAAAAATTTTAAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
28610 AACGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
325 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
28675 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
28740 ATCCACGGCTTCGGCATCCCATCCT-TCTGGCCGACGTAGTGCCCGCTCGCCCGCACGCTCGTTT
455 ATCCACGGCTTCGGCATCCCATCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCACGCTCGTTT
* *
28804 CGA-CAGTTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGAACGGACCGGACTGAGGGTTAG
520 C-ATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGAACGGACCGGACTGAGGGTT-G
* *
28868 -GACAGCAAGATCGGCAGCATGCTGAGGTGGACCCGATCGA-CCTCCAGCTTGTGCATCCTACCC
583 CGACAGCAAGATCGACAGCATGCTGAGGTGGACCCGATCGATCCTCCGGCTTGTGCATCCTACCC
* * ** * *
28931 CTCTGGCCGGTTGAGCGATCGCACGCTAATTTCGTTGGTTGACTTAGGCAAACAAAGTTCATTCC
648 CTCTGGCCGGCTGAGCGATCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCC
*
28996 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGTGTGC
713 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGTGC
*
29057 GCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
29122 TCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
29187 AGT-TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTGGC
130 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGC
*
29251 TGAATTGTTTTATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-
195 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
29315 TC--CTGAAAAAATTTTAAAAAATTCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAA
260 TCTTCTGAAAAAATTTTAAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
29378 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCGTTGTATGAATTTACAGGC
325 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
29443 CATAAAAATGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
29508 ATCCATGGCTTCAGCATCCCA-CCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCCGCACGCTCGTT
455 ATCCACGGCTTCGGCATCCCATCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCACGCTCGTT
* * *
29571 TTATCGGTTTGGCTTA-GCATA-TGAGTTTCAAATTTCCAGTCGTAAGAA-GGACCGGAACTGAG
519 TCATCGG-TTGGCTTAGGCATACGGAG-TTC-AA-TCCCAGTC-TAAGAACGGACCGG-ACTGAG
* * * *
29633 GGTTGCGGCAGTAAGATCGACAGCATGCTCGAGGTGGACCCGACCGATCCCCCGGCTTGTGCATC
578 GGTTGCGACAGCAAGATCGACAGCATGCT-GAGGTGGACCCGATCGATCCTCCGGCTTGTGCATC
* * * *
29698 CTACCCCTCTGGCC-ACTGAGCGCTCCACACACTCGTTTCGTGGGTTGACTTAGGCCAATAACGG
642 CTACCCCTCTGGCCGGCTGAGCGAT-CGCACACTCGTTTCGTGGGTTGACTTAGG-C-A-AACGA
* * *
29762 AGTTCATTCCCAGTCTAAGCATATGGGAG-TCAGTCCAAGTCTAAGATCGGACTGGACCTGAGGG
703 AGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC-GAGGG
*
29826 TTGTTGCGC
766 TTG-TGTGC
* * * *
29835 GCACATGATGTGCGATGGG-ACTGGTACTTGGCCCTTATAATTGGGCTCCTAT-CCTCATCAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAAC
29898 CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGCATTTTACACGGTTTGCTCGCCAGTA-CCAT
65 CTCGAGAACTCACACCCCTTAAAGAGCATTTGAG-ATTTTACA-GGTTTGCT-GCCAGTAGCCAT
29962 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTT
127 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTT
* * ** * *
30027 AGCTGAATTTTTTTGTGCATGATAGCAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
192 AGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * *
30092 A-ATCTT-TCGAAAAAAATTTTTAAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
257 ACTTCTTCT-G-AAAAAA-TTTT-AAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
30155 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
318 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
30220 TACAAGCCATAAAAATGGCATTGGCATGGCAGGACTATAAATATGTGCCTAAACCCACCTACCAC
383 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
30285 ACTATCGATCCACGGCTT-GCGCATCCCGT-CTCTCTGG-CGAGGATAGTGCCAGCCCGCTCGCT
448 CCTATCGATCCACGGCTTCG-GCATCCCATCCTCTCTGGCCGACG-TAGTGCCCGCCCGCCCGCA
* * * * *
30347 CGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGA-TC
511 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGAACGGACCGGACT-
30411 GAGGGTTGC
575 GAGGGTTGC
30420 TGGTGCACAT
Statistics
Matches: 1930, Mismatches: 156, Indels: 86
0.89 0.07 0.04
Matches are distributed among these distances:
767 7 0.00
768 244 0.13
769 249 0.13
770 41 0.02
771 537 0.28
772 209 0.11
773 54 0.03
774 1 0.00
775 1 0.00
776 73 0.04
777 60 0.03
778 51 0.03
779 124 0.06
780 2 0.00
781 16 0.01
782 18 0.01
783 15 0.01
784 225 0.12
785 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (773 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCT
GAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTT
CTTCTGAAAAAATTTTAAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTCGGCATCCCATCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCACGCTCGTTTC
ATCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGAACGGACCGGACTGAGGGTTGCGA
CAGCAAGATCGACAGCATGCTGAGGTGGACCCGATCGATCCTCCGGCTTGTGCATCCTACCCCTC
TGGCCGGCTGAGCGATCGCACACTCGTTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGTGC
Found at i:30627 original size:162 final size:161
Alignment explanation
Indices: 30350--30642 Score: 410
Period size: 162 Copynumber: 1.8 Consensus size: 161
30340 GCTCGCTCGT
* *
30350 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
* * * * *
30415 GTTGCTGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCAGCATTTTTTTTTGCTCGGGGCACC
66 GTTACTGGTGCACATGCTAGGCTCGGGCATATGCTAGTGCAGCATTTTTTTCT-CCCGGGGCACC
30480 ATCGCCGATGTAGTGCCCGCCCGCCCGTCTAC
130 ATCGCCGATGTAGTGCCCGCCCGCCCGTCTAC
* * * ** *
30512 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATTGGATCAGACCGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
* *
30577 GTTAC-GGTGCACATGCTAGGCTCGGGTATATGCTGGTGCCA-CATTTTTTTTCTCCCGGGGCAC
66 GTTACTGGTGCACATGCTAGGCTCGGGCATATGCTAGTG-CAGCA-TTTTTTTCTCCCGGGGCAC
30640 CAT
129 CAT
30643 TGTCGGACCA
Statistics
Matches: 114, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
161 43 0.38
162 71 0.62
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.30
Consensus pattern (161 bp):
TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
GTTACTGGTGCACATGCTAGGCTCGGGCATATGCTAGTGCAGCATTTTTTTCTCCCGGGGCACCA
TCGCCGATGTAGTGCCCGCCCGCCCGTCTAC
Found at i:31652 original size:12 final size:12
Alignment explanation
Indices: 31635--31664 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
31625 GTGTTGGCAC
31635 TTGGCCCTTATA
1 TTGGCCCTTATA
31647 TTGGCCCTTATA
1 TTGGCCCTTATA
31659 TTGGCC
1 TTGGCC
31665 TCCTATCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:32347 original size:26 final size:26
Alignment explanation
Indices: 32311--32363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32301 GTTGACTTAG
32311 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
32337 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32363 G
1 G
32364 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32841 original size:892 final size:890
Alignment explanation
Indices: 30659--37020 Score: 7258
Period size: 897 Copynumber: 7.2 Consensus size: 890
30649 ACCATCACTG
* ** * * * *** * *
30659 GAGAACCTGACTGATGGCATTGGGATTTCGTCGATT-GGGGGGATTGGGGGGTGTCCGCACACGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * *
30723 TGTGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
30788 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
30853 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * **
30918 TTTGTGCATGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTTGGTTCTG
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTG
* *
30983 AAAAAATTTTAAAAAAA-CATTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA-AAGAACGA
325 AAAAAATTTTAAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA-AACGA
*
31046 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
31111 AAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCA
453 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
31176 CGGCTTGCGCATCCCGCCTCTCTGGTCGGGGTAGTGCCCACTCGCCAGCCCGTTTGTTTCATCGG
518 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGG
* ** * * * * *
31241 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGACCGGACCAAGGGTTGCGGTAGCA
583 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGTA
* * * * * **
31306 GGATCAACAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTACGCATACTGCCCCTCTGGTTG
648 GGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * * *
31371 GCTGAACGCCCGCACGTTCATTTCGAGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
713 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * *
31436 CATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGC
778 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCA-A-CGAGGGTTGCGGGTGCACATGCTGGGC
* * * * *
31501 TCGGGCAT-TGCTGGTGCCGTATTTTTTTTCGTCCAGGCCACTA-CCGCC-
841 TCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATCC-CCA
* * * * *
31549 GAAGAACTTGACCGGCGGCATTGGGGATACGGCGATTGGAGGGGCCGGGGGGGTGTGTGCACATG
1 G-AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATG
* ** * *
31614 ATATATGATGGGTGTTGGCACTTGGCCCTTATATTGGCCCTTATATTGGCCTCCTATCCCTCATC
65 ATGTGCGAT-GG-G-T-G--C-TGG----TA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
31679 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCC
118 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
31744 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTG
183 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTT
* * * *
31808 TTTAGTTGAATTTTTTTATGCCTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
247 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
31873 AAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAACGGTAAAAAGTTTTAAAAATCGTGAAAA
312 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
31938 ACAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGTACCATTGTATGAATTT
377 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
*
32003 ACAAGCCATAAAAATGGCATTGGCTTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
442 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
32068 CTATCGATCCACGGCTTGCGTATCTCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCT
507 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
* * *
32133 TGTTTCGTCGGTTGGGTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGA-CGAGGG
572 TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
** * ** * ** * *
32197 TTGTTGTAGTAGGATCGGTAGCACGCAGAAGGGGACCCGACTGATCCCCAACGTGCGCATCATGC
637 TTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGC
* * * *
32262 CCCTCTGGCCGGTTGAGCGCTCGAACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
702 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
32327 CCCAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGGTGC
767 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AA-CGAGGGTTGCGGGTGC
* * *
32392 ACATGTTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCACTATCCCCA
830 ACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATCCCCA
* * * **
32453 AAGAACCTGACCGACGGCATTAGGGTTCCAACGATTGGGGGGCGCCGGGGGGGTGTGCGCACATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG-GCCGGGGGGGTGTGCGCACATG
*
32518 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
32583 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
32648 GAAATGAGGACACTTTTTTCAACTGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTG
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
32713 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCTA
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * * *
32778 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTAAAAAATATAAAACAAGT
325 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
32843 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
32908 ATGGCATTGGCATGGCAGAAATATGAAAATGTGCC-AAACCCACCTACCACCCTATCGATCCATG
455 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* **
32972 GCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTT
520 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTT
* ** *
33037 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCCAG-CCAGATCGAGGGTTGCAGCAGTAG
585 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACTGGACCGAGGGTTGCAGCAGTAG
* * * *
33101 GATCTG-CAGCACG-ACGAGGGGGACCTG-GTCGATCCCCGGCTTGCGTATCCTGCCCTTCT-GC
649 GATC-GACAGCACGCA-GAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * *
33162 CTGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCT-
711 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
33226 --C------AG---A-T--C-G-----GATCGGA-C--CGAGGGTTGCGGGTGCACATGCTGGGC
776 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAACGAGGGTTGCGGGTGCACATGCTGGGC
* * * * * * *
33268 TC-GAGCATCTACTGGTGCCTCA-TTTTTTTCGCCTGGGCCACCATCGTCGGAGCATCGCCG
841 TCAG-GCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGG---CCA-C-T------ATCCCCA
* * *
33328 GAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATTAGGGGGGCC-AGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * *
33392 TATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
33457 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
33522 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTCAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
33587 TTTATGCATGCCAACAAAAATACAAGGATGACGTCTACCAGGTTTGGGGCCAAAAATCCTTTTGA
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * *
33652 AAAAATTTTTAAAAAATC-CTGAACCGTATAAAGTTTCAAAAATCATGAAAAATAGAAATCGAGT
326 AAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
33716 CGTCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
33781 ATAGCATTGGCATGGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATG
455 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
33846 GCTTGCACATCCCACCTCTCTGGCCAGCGTAGTTCCCGCCCGCCCG--CTC-T-TTTCGTCGGTT
520 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTT
* * * * * * * *
33907 GGCTTAGGCATATGGAG-TCATTCCTAGTGTAAGATCGGA-TCGAACCGAGGGTTACGGCAGTAA
585 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCAGCAGTAG
* * * * * * * **
33970 GATCTG-CAGCACGTAGAGGGGCACCCGACCGATCCCTGACTTGCACATCCTGCCCCTCCGATCG
649 GATC-GACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * * *
34034 GCTGAGCGTCCGTACGCTCGTTTCTTGGGTTGACATAGGCGTACGGAGTTCATTACCAGTCTAAG
713 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
34099 CATATGGAGATCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTGCGGGTGCACATGCTAGGT
778 CATATGGAGTTCATTCCCAGTCTAAGATCGGACC--AACGAGGGTTGCGGGTGCACATGCTGGGC
* * * * * * *
34164 TCAGGCATGTGCTGGCGCTGCATTTTTTTTCGGCCGAGCCCCCATCGTCGGACCA
841 TCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATC--C---CCA
* *
34219 TCGTCAGAGAGCCTGATCGGCGGCATTGGGGTTCCAGCGATTGGGGGGGCC-GGGGGGTGTGCGC
1 --G--AGA-A-CCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGC
* ** *
34283 ACATGATGCGCGATGGGTGCTGGTGGTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTC
60 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
34348 AAGAACTCACACCCGCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
125 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
34413 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTG
190 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
*
34478 AA-TTTTTTGATGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTC
255 AATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
34542 TTTCT-AGAAAAATTTTAAACAAATTTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAA
319 CTTCTGA-AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
34606 AACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
383 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
34671 CATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTTCCTAAACCCACCAACCACCTTATCG
448 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
34736 ATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACGTAGT---C-CCCGCTCGCTCGCTCGTTTC
513 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTC
* * * * * * *
34797 GTTGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAACCGAGTGTTGTA
578 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCA
* * * * * ** *
34861 GCAGTAGGATCAACAGTACACAGAGGGGGACTCGA-TCGATCCCCGGCTTGCACATCCT-TTCTT
642 GCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCT
* * * * *
34924 CTGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCA
706 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
34989 GTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGGACTGGAACGAGGGTTGCGGGTGCACAT
771 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC--CAACGAGGGTTGCGGGTGCACAT
* * * * * * ** *
35054 GCTGTGCTCAGGAATGTGCTGGTGCCGTA-TTTTTTTTGCTCGAGCCACCATCATCG
834 GCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATCCCCA
* * * * *
35110 GAGAACCTGACCGACGGCATCGGGGTTTCGACGATTGGAGGGGG-C-GGGGGGTGTGTGCACATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGG-GGGGGCCGGGGGGGTGTGCGCACATG
* * * *
35173 ATGTGCGATGGGTGCTCGAACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAG
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
35238 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
35303 AAAATGGGGACATATTTTTTCAAATGGTCACAAAATCCTTTACA-TTACGAGTTTTTAGCTGAAT
195 GAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCCTGTACACTT-CGAGTTTTTAGCTGAAT
* * *
35367 TTTTTTATGCATGCCAACAAAAATACAGGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCC-TC
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
35431 --------------------CT--AA----AAAAA-TTTCAAAAATCGTGAAAAATAGAAAACAA
323 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
35469 GTCGTCTTGCCATGAAACTTCACATGAAGGCTGT-AGGGACCATTGTATGAATTTACAAGCCATA
388 GTCGTCTTGCCATGAAACTTCACATGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
35533 AAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCC
452 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * * *
35598 ACGACTTACGCATCCCGCCTCTCTGGCCGGCGTAGTTCTCGCCCGTCCGTCCG-TTCATTTTGTC
517 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT-GTTTCGTC
* * **
35662 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGG-CCGAGGGTTGCAATA
581 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCAGCA
* * * * * * * * * * * *
35726 GTAGGATTGACAGCATGCTGAGAGGGACCGGGCCGATCCCCAGCTTGCGTATCTTACCCCTCTTG
645 GTAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * *
35791 CCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
710 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
35856 AAG---ATCG-G---------A--CT--G---GG--C--CGAGGGTTGCGGGTGCACATGCTGGG
775 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAACGAGGGTTGCGGGTGCACATGCTGGG
* * * **
35897 CTCAGGCATGTGCTGGTGCCGCATTTCTTTTTGCCTAAGGCACCATCGTCGGAGCGTCGTCA
840 CTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCC--CGG-GCCA-C-T---A---TCCCCA
* * *** *
35959 GAGAACCTGACCGGCGGCAATGGGGTTTCGGCGATTGGGGTCCCCGGGGGGGTGTGTGCACATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
36024 TGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* *
36089 TCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
36154 AAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGGACATTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
36219 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAGCTCCTTCTGG
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * * ** *
36284 AAAAATTTAAAAAAAATATTGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTC
326 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
36349 ATCTTGCCATGCAACTTCACATGAAGGCTTTAGGGACCATTCTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
36414 TGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTTTCGATCCACAG
456 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
36479 CTT-CGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGTCCGCCTGCTCGTTTCGTCGGTTG
521 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
* * * * * ** **
36543 GCTTAGGCACACGGAGTTTATTCCCAATCTAAGATTAGA-TCGATCCGAGGGTTGTGGCAACAGG
586 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CCGAGGGTTGCAGCAGTAGG
** * * * ** * * * * *
36607 ATCGGTAGCATGCTGAGGGGGACTCGGTTGATCCCCAGCTTGTGCATCTTGCCCCTTTGGCCAGC
650 ATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* ** * * * **
36672 TGAACGCCTACATGCTCATTTCGTAGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCA
715 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * * * *
36737 TACGAAGTTCAATCCTAGTCTAAGATCAGATCAGACCGACGGTTGTGGGTGCACATGCTGGGTTC
780 TATGGAGTTCATTCCCAGTCTAAGATCGGACCA-A-CGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * ** **
36802 GGGCATGTGCTGGTGTCGTATTTTTTTTTGCCCAGGCCACCATTGCTG
843 AGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATCCCCA
* ** * * * *
36850 GAGAACCTAACCCCCGGCATTGAGGTTCCGACGATTGGGGGGGCCAGAGGGGGTGTGCACACATG
1 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCC-GGGGGGGTGTGCGCACATG
* * * * * **
36915 ATGTGCTATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCCATCCCTCACCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* *
36980 CTCACACCCCACTTAAAGAGCATTTCAGATTTTACAAGTTT
130 CTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
Statistics
Matches: 4676, Mismatches: 609, Indels: 371
0.83 0.11 0.07
Matches are distributed among these distances:
837 46 0.01
838 9 0.00
840 1 0.00
841 3 0.00
842 1 0.00
843 2 0.00
846 2 0.00
848 4 0.00
849 139 0.03
850 155 0.03
858 179 0.04
859 7 0.00
860 3 0.00
861 2 0.00
862 103 0.02
863 68 0.01
864 14 0.00
865 44 0.01
867 2 0.00
868 3 0.00
869 81 0.02
870 91 0.02
872 5 0.00
873 408 0.09
874 74 0.02
875 43 0.01
876 212 0.05
877 151 0.03
878 1 0.00
879 4 0.00
880 1 0.00
882 3 0.00
883 1 0.00
885 179 0.04
886 105 0.02
887 9 0.00
888 1 0.00
889 2 0.00
890 1 0.00
891 262 0.06
892 544 0.12
893 43 0.01
894 5 0.00
895 6 0.00
896 68 0.01
897 663 0.14
898 84 0.02
899 6 0.00
900 2 0.00
901 1 0.00
902 238 0.05
903 347 0.07
904 245 0.05
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGTAGGA
TCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ATGGAGTTCATTCCCAGTCTAAGATCGGACCAACGAGGGTTGCGGGTGCACATGCTGGGCTCAGG
CATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGCCACTATCCCCA
Found at i:36744 original size:26 final size:26
Alignment explanation
Indices: 36708--36760 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36698 GTTGACTTAG
*
36708 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCAATCCCAGTCTAA
* *
36734 GCATACGAAGTTCAATCCTAGTCTAA
1 GCATACAAAGTTCAATCCCAGTCTAA
36760 G
1 G
36761 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCAATCCCAGTCTAA
Done.