genome.fa.s228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168053.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36870

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659--728	25	2.7	25	82	10	70	45	2	2	48	1.32
1265--1301	19	1.9	19	88	0	56	43	0	0	56	0.99
1931--1991	31	2.0	31	83	6	79	44	0	1	54	1.10
2419--2459	19	2.2	19	86	0	55	48	4	0	46	1.23
2932--3502	182	3.2	179	81	6	642	43	9	7	39	1.65
3524--4302	182	4.3	180	73	9	498	40	11	8	39	1.71
3848--4302	181	2.5	180	78	6	436	40	10	8	40	1.72
3906--4303	181	2.2	182	80	5	448	41	10	8	39	1.70
4425--4492	26	2.7	24	75	6	64	48	0	5	45	1.26
4819--4869	20	2.6	20	78	3	59	56	0	0	43	0.99
5052--5126	26	3.0	25	75	13	73	44	1	5	49	1.33
5197--5264	29	2.5	26	83	11	75	52	2	0	44	1.16
6208--6267	30	2.0	31	83	9	79	46	3	1	48	1.28
6547--6588	22	1.9	22	95	0	75	50	2	2	45	1.27
6541--6594	22	2.4	22	81	3	72	50	3	1	44	1.30
6975--7007	15	2.3	15	90	10	52	51	0	0	48	1.00
6986--7053	23	3.2	20	71	22	57	44	1	0	54	1.09
7128--7172	19	2.4	18	85	7	54	57	2	0	40	1.11
7750--7819	14	5.5	12	75	20	54	58	1	1	38	1.16
8077--8127	24	2.1	25	81	3	59	45	1	1	50	1.24
8221--8388	13	13.4	13	67	21	51	45	4	1	48	1.29
8355--8400	8	5.9	8	78	14	51	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8355--8400	23	2.0	23	87	12	67	47	2	0	50	1.13
8877--8945	32	2.0	33	83	10	86	43	4	2	49	1.37
9532--9614	43	2.0	41	85	4	112	44	19	14	21	1.86
9989--10246	88	3.0	86	85	5	342	37	16	9	36	1.81
9990--10246	21	11.8	22	84	5	301	37	16	9	36	1.81
10656--11083	63	6.8	62	72	14	236	28	27	10	33	1.90
12693--12740	23	2.3	21	86	13	64	52	16	6	25	1.67
13283--13393	33	3.4	33	79	14	106	54	0	2	42	1.14
13320--13383	19	3.6	18	77	12	60	53	0	1	45	1.10
13582--13635	17	2.9	18	81	8	56	53	0	3	42	1.18
13602--13637	17	2.1	17	94	0	63	55	0	2	41	1.14
13826--13870	17	2.7	18	83	10	60	44	4	0	51	1.21
13941--14011	17	4.4	16	71	16	58	49	0	0	50	1.00
14479--14522	19	2.2	20	84	11	56	56	2	4	36	1.32
15196--15228	18	1.9	17	88	11	50	39	12	6	42	1.67
15020--15416	181	2.2	181	82	3	460	37	11	10	40	1.75
15473--15872	182	2.2	178	82	4	480	42	11	7	38	1.69
18027--18074	16	2.9	16	75	12	53	50	2	2	45	1.25
18365--18403	19	2.1	18	85	4	51	41	2	0	56	1.13
19259--19294	19	1.9	18	88	5	54	50	2	0	47	1.15
19400--19450	18	2.9	17	74	25	52	45	3	0	50	1.20
19482--19560	10	6.9	12	71	22	55	48	1	1	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19461--19565	36	3.2	33	76	17	96	46	1	2	48	1.27
19471--19577	14	6.7	16	69	22	57	46	0	2	49	1.22
19650--19692	15	2.9	15	80	16	54	55	0	0	44	0.99
19780--19818	19	2.1	18	90	4	60	53	5	5	35	1.45
20056--20098	15	2.8	16	82	7	52	46	0	0	53	1.00
20795--20926	70	1.9	68	92	3	219	56	8	12	23	1.63
21459--21547	25	3.6	25	92	0	151	44	13	12	29	1.80
21458--21544	12	6.9	14	67	20	57	45	13	12	27	1.80
21509--21637	22	5.8	22	79	3	107	37	10	15	36	1.81
21504--21637	44	3.0	44	82	4	144	36	11	14	37	1.82
23202--23315	54	2.2	52	90	3	174	48	8	14	28	1.73
23202--23339	52	2.6	54	87	3	199	45	9	15	29	1.77
23637--23661	9	2.8	9	100	0	50	44	8	0	48	1.32
23712--23756	20	2.4	18	79	13	54	42	0	2	55	1.12
23712--23757	19	2.4	19	82	10	58	41	0	2	56	1.11
24013--24067	18	3.2	17	76	14	51	50	0	1	47	1.11
24362--24496	66	2.0	71	80	14	158	51	0	2	44	1.21
24389--24468	33	2.4	32	78	14	83	55	0	2	42	1.13
24409--24502	20	5.2	19	72	20	62	53	0	3	43	1.17
24462--24505	17	2.4	17	85	14	52	54	0	2	43	1.12
24543--24576	15	2.2	16	89	5	52	50	0	0	50	1.00
24594--24665	15	5.0	15	70	13	53	44	4	0	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25958--26035	25	3.2	25	80	12	65	47	1	2	48	1.23
26026--26064	20	1.9	20	89	5	60	48	2	0	48	1.15
26359--26455	27	3.6	27	75	15	76	46	0	1	52	1.07
26362--26439	31	2.6	31	82	11	99	43	0	1	55	1.08
26856--26945	17	4.9	17	70	15	56	44	2	1	52	1.20
27191--27244	18	3.1	18	72	17	51	48	1	5	44	1.37
27278--27306	14	2.0	15	93	6	51	48	0	6	44	1.29
27947--28107	15	10.9	15	67	12	66	46	1	1	50	1.20
27952--28015	30	2.1	32	88	5	96	50	0	0	50	1.00
28379--28436	20	2.8	20	76	10	55	53	3	1	41	1.28
28408--28439	13	2.5	13	100	0	64	56	0	0	43	0.99
28401--28468	23	3.0	23	78	16	70	51	1	0	47	1.09
28433--28483	24	2.2	23	82	10	59	47	5	0	47	1.26
28523--28563	19	2.2	19	86	0	55	48	4	0	46	1.23
28745--28774	15	2.0	15	93	0	51	53	3	0	43	1.17
29027--29599	182	3.2	180	79	7	592	43	9	6	39	1.65
31158--31231	38	1.9	39	86	2	105	36	2	8	52	1.45
31655--31696	13	3.2	13	83	10	50	47	0	0	52	1.00
31636--31696	17	3.5	17	72	19	54	45	1	0	52	1.10
31889--31929	15	2.6	16	88	3	66	46	0	2	51	1.14
31996--32050	21	2.6	22	83	13	64	52	0	0	47	1.00
32229--32262	11	3.1	11	86	0	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32863--32908	21	2.2	20	88	3	65	50	2	0	47	1.13
33561--33598	19	2.0	20	84	5	51	42	0	5	52	1.24
33578--33646	35	1.9	33	83	13	84	50	1	4	43	1.30
33848--34841	181	5.5	175	75	9	637	41	9	8	40	1.69
34007--34816	361	2.2	360	78	7	845	41	9	8	40	1.68
34971--35017	21	2.2	22	88	3	69	38	4	2	55	1.31
35018--35060	10	4.4	10	88	2	61	55	0	2	41	1.12
36126--36216	39	2.3	38	77	1	92	53	1	1	43	1.15

Tables:   1

The End!