Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167848.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 79424
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:1404 original size:26 final size:27
Alignment explanation
Indices: 1348--1406 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
1338 AATCCTTCCA
* *
1348 AAAAAATTTTAAAAAATCCCGAACAAC
1 AAAAAATTTTAAAAAATCACGAAAAAC
* * *
1375 AAAAAGTTTT-AAAAATCATGAAAAAT
1 AAAAAATTTTAAAAAATCACGAAAAAC
1401 AAAAAA
1 AAAAAA
1407 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.20
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCACGAAAAAC
Found at i:1803 original size:26 final size:26
Alignment explanation
Indices: 1767--1819 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1757 GTTGACTTAG
1767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1819 G
1 G
1820 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2047 original size:893 final size:893
Alignment explanation
Indices: 1--4291 Score: 5917
Period size: 893 Copynumber: 4.8 Consensus size: 893
* * * *
1 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCATGGGTTACAG
1 CATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGG
* * ** *
66 CAGCACATGCTGGGCTCGAGCATGTACTGGTGCCACAATTTTCTTCACCGGGGCACCATCGTCGG
65 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * * *
131 AGCATCACCAGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
130 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-AGGGGGCCGGGGGGTGTG
* * *
196 CGCACATGATGTGCGGTGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAAC
194 CGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
261 CTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTC
259 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
326 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATAT-GAGTTTTTA
324 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTA
* * * *
390 GCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCGAAA
388 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * **
455 CTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTC-AAAATCGTGAAAAATGGA
453 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAA
*
519 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
584 CCATAAAAATGGCATTGGC--AC------A--CAGATGTACCTAAACCCACCTACCACACTATCG
583 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
639 ATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCA-TAGTGCCCACCCGCCCGCTCGTTTCGTC
648 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-AGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* * * * ** *
703 GGTTGGCTTAGGCATATGGGAGTTCATTCCCAGA-GTAAGATCGGACCGGACCGAAG-GTTATGG
712 GGTTGGCTTAGGCATA-CGGAGTTCATTCCCA-ATCTAAGATCGGACCAGA-CTAAGAGTTGCGA
* * * * * * * *
766 CTGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGAACCCTGGCTTGAGCATCCCGCCCGTCT
774 CAGCAAGATCGGCAGCACGCAAAAGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCT
* * * *
831 GGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTT
839 GGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
886 CATTCCCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGAC
1 CATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGC
* * *
951 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGGA
66 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * *
1016 GCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGCGATC-GAGGGGCCGGGGGGGTGTA
131 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAG-GGGGCC-GGGGGGTGTG
**
1080 CGCACATGATGT-ACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAA
194 CGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
1144 GCTCGAGAACTCACACCCCCTTAAAGAGCTTTTTAGATTTTACAGGTTTGCTGCCAGTAACCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
1209 AAAGTATTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGGTTTTA
323 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
1274 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
388 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
1339 ATCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTTAAAAATCATGAAAAATAAA
453 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAA
*
1404 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
1469 CCATAAAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
583 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * **
1534 ATCCACGACTTGCG-ATCCCATCTCTCTGGCCGGAGTAATGCCCGCCCGTCTACTCG-TTCTGTC
648 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTC-GTC
* *
1597 GGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACTAAGGGTTGCGACAG
712 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTAAGAGTTGCGACAG
* * * *
1662 TAGGATCAGCAGCACGCAAAAGGGGACCCGGTCGATCCCCGACTTGAGCATCCCGCCCCTCTGGC
777 CAAGATCGGCAGCACGCAAAAGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGC
1727 CGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTT
842 CGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
1779 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGG
1 CATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGG
* * * *
1844 CAGAAAATGCTGGGGTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCG
65 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCG
* * * * **
1908 GAGCATCACCGGAGAACTTGACCAACGGCATTGGGGTT-TGATGATCAAGGGGGCCGGGGGGTGT
129 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-AGGGGGCCGGGGGGTGT
*
1972 GCGCACATAATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
193 GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
2037 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
2102 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTG
323 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
2167 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
388 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
2232 CTCCTTCCAAAATATTTTTAAAAAATCTCGAGTC-ATAAAAAGTTTCAAAAATCATGAAAAATAA
453 CTCCTTCCAAAAAAATTTTAAAAAATCCCGA-ACAACAAAAAGTTTCAAAAATCGTGAAAAATAA
*
2296 AAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
517 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
2361 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
582 GCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
2426 GATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGTA-TAGTGCCCACCCGCCCGCTCGTTTTGT
647 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-AGTAGTGCCCGCCCGCCCGCTCGTTTCGT
* * * * * *
2490 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-GTAAGATCAGATCAGA-TCAAAAGTTACGG
711 CGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCAGACT-AAGAGTTGCGA
* * *
2553 CTGCAAGATCGGCAGCACGC-AGAGGGAGACCCGGTCGATCCCTGGCTTGAGCATCCCGCCCCTC
774 CAGCAAGATCGGCAGCACGCAAAAGGG-GACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTC
* * *
2617 TGGCCG-GTAGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-TAT
838 TGGCCGACT-GAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGT-T
* *
2673 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGG
1 CATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGG
* * *
2738 CAGCACATGCTCGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCG
65 CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCG
* * *
2802 GAGCATCGTC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
129 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTGTG
* **
2866 CGCACATGATGT-ACGATGTGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAA
194 CGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
2930 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAACCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
2995 AAAGTGTCTGAAATGGGGACACGTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGGTTTTA
323 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
3060 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAA
388 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
3125 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAA
453 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAA
3190 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
3255 CCATAAAACTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
583 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
3320 ATCCACGGCTTGCGCATCCCTTCTCTCTAGCCGGCGTAGTGCCCGTCCGCCCGCCCGCTTGTTTC
648 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTG--C--CCGCCCGCCCGCTCGTTTC
* * * * * * * *
3385 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCATTCTGATATTGGATCAAACTGAGAGTTGCGA
709 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTAAGAGTTGCGA
* * * * * * * * *
3450 CAACAGGATCGGAAGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCACCCCTCT
774 CAGCAAGATCGGCAGCACGCAAAAGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCT
3515 GGCCGACTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGAC-T-----TA--G-G--
839 GGCCGACTGAGCGCCCGCACGCTCGA-TTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
3559 CA-T---A--C---G---A--AGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGTGGC
1 CATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGC
*
3610 AACACATGCTGGGCTCGAGCATGTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCGCCGGA
66 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGA
*
3674 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGAT--------CGGGGGGTGTGCG
131 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCG
*
3731 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
196 CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
3796 CAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
261 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
3861 GTGATTGAAATGGGGACACTTTTATCAAATGGTCACAACATGTTGTACACTTCGAGTTTTTAGCT
326 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
3926 GAATTTTTTTGTGCACGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGGAC-AAACTC
391 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** *
3990 CTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
456 CTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
* * *
4055 CAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACACGCCA
521 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
4120 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAACTACCACCCTATCGATC
586 TAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
4185 CACGGCTTGTGCATCCCGTCTCTGTGGCTGGCGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCGTC
651 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTC
*
4250 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
712 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCG
4292 AACCGGACCG
Statistics
Matches: 3057, Mismatches: 296, Indels: 129
0.88 0.09 0.04
Matches are distributed among these distances:
861 2 0.00
862 282 0.09
863 242 0.08
870 33 0.01
871 105 0.03
872 1 0.00
874 1 0.00
877 1 0.00
880 1 0.00
882 2 0.00
883 7 0.00
884 424 0.14
885 117 0.04
886 2 0.00
887 2 0.00
889 1 0.00
891 2 0.00
892 7 0.00
893 1122 0.37
894 500 0.16
895 49 0.02
896 1 0.00
897 148 0.05
898 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
CATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGC
AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGA
GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTGTGCG
CACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTAAGAGTTGCGACAGCAAG
ATCGGCAGCACGCAAAAGGGGACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGAC
TGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTT
Found at i:6927 original size:701 final size:701
Alignment explanation
Indices: 5174--7354 Score: 2858
Period size: 701 Copynumber: 3.1 Consensus size: 701
5164 AAGCATACAA
* ** * * ***
5174 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGC-GACAGCACATGCTGGGCTTGGGC
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGCAG-CAGCACATACTGGGCTCAAGC
* * * * * * *
5238 ATTTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATTGCCAGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCATCGAGG--CCAT---C---GCATCGTCGGAGAACCTGA-
* * * * *
5303 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTATGCGCACATGATGTGCGATGGG
121 CGGCGTCATTAGGGTTTCGGCGATCGGGGGGGCCGGGGTGGTGTGCGCACATGATGTGCGATGGG
* *
5367 TGCTGGTACCTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
186 TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATC-AACCTCGAGAACTCACACCCCCT
*
5432 TAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
250 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
5497 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGA
315 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-
* * *
5562 CAACAAAATTACAAGGATCACGTCTACCAGTTTGGGGCCAAAAAGCCTTCCAAAAAAATTTTAAA
379 CAAAAAAATTACAAGGATCACGTCTACAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAA
* * ** * * **
5627 AAATCCCAGACAGCAAAAAGTTTTGAAAATTAGGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
444 AAAT-CCAGACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * * *
5692 ACTTGACGGGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGCCACG
508 ACTTGATGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
** ** * *
5756 TAGAAATATGAAGATGTAACTAAACTGACCTAACCACCCTATCGATCCATGGCTTGCGCATCCCG
573 TAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCAATCCACGGCTTGCGCATCCCG
* * *
5821 TCTCTCTAGCCGGCGTTGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
637 TCTCTCTGGCCGACGTTGTGCCCGCCCGCCCGT-----CGCTCGTTTCGTCGGTTGGCTTAGGCA
5886 TACGG
697 TACGG
* ** * * * *
5891 AGTTCATTCCCAGTCTAAGATCTGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGCAGCAGCACATACTGGGCTCAAGCA
*
5956 TGTGCTGGTGGCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCATCGAGG--CCATC------GCATCGTCGGAGAACCTGAC-
* * *
6021 GGCAGT-ATTAGGGTTTTGGCGAT-GGGGGGGCCGGGGGTGGTGTACGCACATGATGTGTGATGG
122 GGC-GTCATTAGGGTTTCGGCGATCGGGGGGGCC-GGGGTGGTGTGCGCACATGATGTGCGATGG
* *
6084 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCACACCCCC
185 GTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATC-AACCTCGAGAACTCACACCCCC
*
6149 TAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
249 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
6214 ATTTTTTTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATG
314 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
6279 CGAAAAAAATTACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
379 C-AAAAAAATTACAAGGATCACGTCTAC-AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTA
*
6344 AAAAATCCTAGGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
442 AAAAATCC-AGACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
6409 AAACTTGATGTGAAGCCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
506 AAACTTGATGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
6474 TGTAGAAACATGAAGATGTGCCTAAACCCACCTACCAACCTATCAATCCACGGCTTGCGCATCCC
571 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCC
6539 GTCTCTCTGGCCGACGTTGTGCCCGCCCG-CC-T-GCTCGTTTCGTCGGTTGGCTTAGGCATACG
636 GTCTCTCTGGCCGACGTTGTGCCCGCCCGCCCGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
6601 G
701 G
* * *
6602 AGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGCTTGCAGCAGTACCTACTGGGCTCAAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGCAGCAGCACATACTGGGCTCAAGCA
*
6667 TGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-CA-C-CATCGTCGGAGAACCTGATCGGCGTCAT
66 TGTGCTGGTGCCGCATTTTTCTTCATCGAGGCCATCGCATCGTCGGAGAACCTGA-CGGCGTCAT
* * * *
6729 TAGGGTTTCGGTGATCGGGGGGGTCGAGGGTGGTGTGCACACATGATGTACGATGGGTGCTGGTA
130 TAGGGTTTCGGCGATCGGGGGGGCCG-GGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
6794 CTTGGCCCTTATATTAGCCCCCTATCCCTTATCAACCCTCAAGAACTCACACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTAGCCCCCTATCCCTCATCAA-CCTCGAGAACTCACACCCCCTTAAAGAGC
*
6859 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTC
258 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
6924 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
323 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAA
* * * * *
6989 ATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCC
387 TTACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCA
* *
7054 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGTAAACGAGTCATCTTGCCATGAAACTTCAT
451 G-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGAT
* * * *
7119 GTCAAGGCTTAAAGG-ACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
515 GTGAAGGCTT-AAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* ** *
7183 TAGGAAGATGTGCCTAAACCCACCT-CTCACCCTATTTATCCACGGCTTGCGCATCCTGTCTCTC
579 TATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTC
* *
7247 TGGTCGACGTAGTGCCCACCCGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
643 TGGCCGACGT--T--------G--TGCCCGCCCGCCCGT-CGCTCGTTTCGTCGGTTGGCTTAGG
7312 CATACGG
695 CATACGG
*
7319 AGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
7355 GTTACGGTAG
Statistics
Matches: 1312, Mismatches: 114, Indels: 76
0.87 0.08 0.05
Matches are distributed among these distances:
699 2 0.00
700 41 0.03
701 459 0.35
702 6 0.00
703 1 0.00
707 1 0.00
708 2 0.00
711 115 0.09
713 9 0.01
714 3 0.00
715 1 0.00
716 10 0.01
717 198 0.15
718 236 0.18
719 193 0.15
720 35 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (701 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGCTTGCAGCAGCACATACTGGGCTCAAGCA
TGTGCTGGTGCCGCATTTTTCTTCATCGAGGCCATCGCATCGTCGGAGAACCTGACGGCGTCATT
AGGGTTTCGGCGATCGGGGGGGCCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTAGCCCCCTATCCCTCATCAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAATTAC
AAGGATCACGTCTACAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCAGACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGATGTGAAG
GCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTTGTGCCCGCCCGCCCGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
Found at i:7500 original size:26 final size:26
Alignment explanation
Indices: 7470--7522 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7460 GTTGACTTAG
7470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7522 G
1 G
7523 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:9026 original size:58 final size:58
Alignment explanation
Indices: 8842--9130 Score: 415
Period size: 58 Copynumber: 5.0 Consensus size: 58
8832 CTTTGTGTAG
*
8842 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG-AAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
8898 GG-AAATTGATACTTTCAACTTTTCCCCAAAAAT-GTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
8954 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* * * * *
9012 GGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
* *
9071 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTT-GAAAATTT-ATTTTTA
9131 TTTAAAGAAA
Statistics
Matches: 212, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
55 28 0.13
56 26 0.12
57 31 0.15
58 66 0.31
59 40 0.19
60 6 0.03
61 15 0.07
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:9157 original size:14 final size:14
Alignment explanation
Indices: 9138--9167 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9128 TTATTTAAAG
*
9138 AAAATAGAATAATA
1 AAAATAGAAAAATA
9152 AAAATAGAAAAATA
1 AAAATAGAAAAATA
9166 AA
1 AA
9168 GAAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:9203 original size:17 final size:16
Alignment explanation
Indices: 9181--9220 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9171 AAGTAAAACA
*
9181 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
9197 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
9214 AAATAAA
1 AAATAAA
9221 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:9279 original size:10 final size:10
Alignment explanation
Indices: 9266--9290 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9256 AAATGAAAAT
9266 AAAAAAATTC
1 AAAAAAATTC
9276 AAAAAAATTC
1 AAAAAAATTC
9286 AAAAA
1 AAAAA
9291 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:9675 original size:19 final size:20
Alignment explanation
Indices: 9631--9673 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
9621 TCCGGTGAGA
* *
9631 TTTTCGTCGGATTCTGGGTT
1 TTTTCATCGGAATCTGGGTT
9651 TTTTCATCGGAATCTGGGTT
1 TTTTCATCGGAATCTGGGTT
9671 TTT
1 TTT
9674 CACGCGGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.09, C:0.14, G:0.26, T:0.51
Consensus pattern (20 bp):
TTTTCATCGGAATCTGGGTT
Found at i:9681 original size:20 final size:20
Alignment explanation
Indices: 9638--9682 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
9628 AGATTTTCGT
* *
9638 CGGATTCTGGGTTTTTTCAT
1 CGGAATCTGGGTTTTTTCAG
9658 CGGAATCTGGG-TTTTTCACG
1 CGGAATCTGGGTTTTTTCA-G
9678 CGGAA
1 CGGAA
9683 GTTCGCCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.38
Consensus pattern (20 bp):
CGGAATCTGGGTTTTTTCAG
Found at i:10341 original size:3 final size:3
Alignment explanation
Indices: 10333--10377 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
10323 AAAGATATAC
10333 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
10378 CAAAAGAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10594 original size:10 final size:9
Alignment explanation
Indices: 10579--10633 Score: 71
Period size: 8 Copynumber: 6.3 Consensus size: 9
10569 AACATTGTCA
10579 TTTTTTG-T
1 TTTTTTGTT
*
10587 TTTGTT-TT
1 TTTTTTGTT
10595 TTTTTTGTT
1 TTTTTTGTT
10604 TTTTTTG-T
1 TTTTTTGTT
10612 TTTTTTGTTT
1 TTTTTTG-TT
10622 TTTTTTGTT
1 TTTTTTGTT
10631 TTT
1 TTT
10634 GACCAAAGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
8 19 0.46
9 14 0.34
10 8 0.20
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:10595 original size:1 final size:1
Alignment explanation
Indices: 10579--10633 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
10569 AACATTGTCA
* * * * * *
10579 TTTTTTGTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10634 GACCAAAGCC
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:10606 original size:17 final size:16
Alignment explanation
Indices: 10579--10634 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
10569 AACATTGTCA
*
10579 TTTTTTGTTTTGTTTT
1 TTTTTTGTTTTTTTTT
10595 TTTTTTGTTTTTTTTGT
1 TTTTTTGTTTTTTTT-T
10612 TTTTTTGTTTTTTTTT
1 TTTTTTGTTTTTTTTT
*
10628 GTTTTTG
1 TTTTTTG
10635 ACCAAAGCCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 21 0.57
17 16 0.43
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (16 bp):
TTTTTTGTTTTTTTTT
Found at i:10707 original size:41 final size:41
Alignment explanation
Indices: 10644--10785 Score: 203
Period size: 41 Copynumber: 3.5 Consensus size: 41
10634 GACCAAAGCC
* * *
10644 CCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* * *
10685 CCTCTACACAAAGGCACCACGACTTTTGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
* *
10726 CCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
*
10767 CCTCTAAATAGAGGCACCA
1 CCTCTAAACAGAGGCACCA
10786 AATTGCTCCT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
Found at i:10788 original size:26 final size:26
Alignment explanation
Indices: 10759--10811 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10749 TTTGGAAAGT
*
10759 AAATTGCTCCTCTAAATAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
10785 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
10811 A
1 A
10812 CGACTTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:10826 original size:67 final size:67
Alignment explanation
Indices: 10718--10852 Score: 243
Period size: 67 Copynumber: 2.0 Consensus size: 67
10708 TTTTGAAAGT
*
10718 AAATTGCTCCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCA
1 AAATTGCTCCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
10783 CC
66 CC
* *
10785 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 AAATTGCTCCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
10850 CC
66 CC
10852 A
1 A
10853 CGACTTTGGA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (67 bp):
AAATTGCTCCTCTAAACAGAGCCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
CC
Found at i:10875 original size:108 final size:108
Alignment explanation
Indices: 10677--10893 Score: 362
Period size: 108 Copynumber: 2.0 Consensus size: 108
10667 TTTGGAAAAT
* *
10677 AAATTGCTCCTCTACACAAAGGCACCACGACTTTTGAAAGTAAATTGCTCCTCTAAACAGAGCCA
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGCCA
* * *
10742 CCACAACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGGCACC
66 CCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
* *
10785 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGCCA
*
10850 CCACGACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
66 CCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
10893 A
1 A
10894 CGACTTTGGA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.22
Consensus pattern (108 bp):
AAATTGCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGCCA
CCACAACTTTGGAAAATAAAATGCTCCTCTAAAGAGAGGCACC
Found at i:10931 original size:42 final size:42
Alignment explanation
Indices: 10785--11002 Score: 356
Period size: 41 Copynumber: 5.3 Consensus size: 42
10775 TAGAGGCACC
10785 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
10826 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-T
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
* *
10867 AAAATGCTCCTCTAAAGAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
*
10909 AAATAGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
10951 AAATTGCTCCTCTAAACAGAGGCA--ACGAAACTTTGG-AAAGT
1 AAATTGCTCCTCTAAACAGAGGCACCACG--ACTTTGGAAAAGT
10992 AAATTGCTCCT
1 AAATTGCTCCT
11003 TGACAATCAT
Statistics
Matches: 167, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
40 3 0.02
41 91 0.54
42 73 0.44
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (42 bp):
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
Found at i:10938 original size:83 final size:83
Alignment explanation
Indices: 10789--11002 Score: 353
Period size: 83 Copynumber: 2.6 Consensus size: 83
10779 GGCACCAAAT
10789 TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
10854 GACTTTGGAAAA-TAAAA
66 GACTTTGGAAAAGTAAAA
* *
10871 TGCTCCTCTAAAGAGAGGCACCACGACTTTGGAAAAGTAAATAGCTCCTCTAAACAGAGGCACCA
1 TGCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCA
*
10936 CGACTTTGGAAAAGTAAAT
65 CGACTTTGGAAAAGTAAAA
10955 TGCTCCTCTAAACAGAGGCA--ACGAAACTTTGGAAAGTAAATTGCTCCT
1 TGCTCCTCTAAACAGAGGCACCACG--ACTTTGGAAAGTAAATTGCTCCT
11003 TGACAATCAT
Statistics
Matches: 123, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
82 34 0.28
83 59 0.48
84 30 0.24
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (83 bp):
TGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAAGTAAAA
Found at i:12239 original size:28 final size:24
Alignment explanation
Indices: 12208--12269 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 24
12198 AATTTGAATC
12208 TCTTTTTTTCATTTTCTCATTTCTTTCT
1 TCTTTTTTTC-TTTTCT--TTT-TTTCT
*
12236 TCTTTTTTTCTTTTGTTTTTTTCT
1 TCTTTTTTTCTTTTCTTTTTTTCT
12260 TCTTTCTTTT
1 TCTTT-TTTT
12270 TTCATCATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 10 0.31
25 7 0.22
27 5 0.16
28 10 0.31
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (24 bp):
TCTTTTTTTCTTTTCTTTTTTTCT
Found at i:12247 original size:15 final size:14
Alignment explanation
Indices: 12227--12284 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
12217 CATTTTCTCA
12227 TTTCTTTCTTCTTTT
1 TTTC-TTCTTCTTTT
*
12242 TTTCTT-TTGTTTT
1 TTTCTTCTTCTTTT
12255 TTTCTTCTT-TCTTT
1 TTTCTTCTTCT-TTT
* *
12269 TTTCATCATCTTTT
1 TTTCTTCTTCTTTT
12283 TT
1 TT
12285 CATTTTTCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 13 0.35
14 19 0.51
15 5 0.14
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTCTTCTTCTTTT
Found at i:12280 original size:20 final size:20
Alignment explanation
Indices: 12257--12295 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12247 TTTGTTTTTT
*
12257 TCTTCTTTCTTTTTTCATCA
1 TCTTCTTTCATTTTTCATCA
*
12277 TCTTTTTTCATTTTTCATC
1 TCTTCTTTCATTTTTCATC
12296 CGTTGTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (20 bp):
TCTTCTTTCATTTTTCATCA
Found at i:16821 original size:3 final size:3
Alignment explanation
Indices: 16815--16856 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
16805 AAAGATATAC
16815 ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
16857 CAAAAGAAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:17717 original size:26 final size:26
Alignment explanation
Indices: 17687--17739 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17677 GTTGACTTAG
*
17687 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17739 G
1 G
17740 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18592 original size:26 final size:26
Alignment explanation
Indices: 18562--18614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18552 GTTGACTTAG
* *
18562 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18588 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18614 G
1 G
18615 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20357 original size:26 final size:26
Alignment explanation
Indices: 20328--20380 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20318 CTTGACTTAG
20328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20354 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20380 G
1 G
20381 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20667 original size:873 final size:874
Alignment explanation
Indices: 16973--20785 Score: 5265
Period size: 898 Copynumber: 4.3 Consensus size: 874
16963 GGTGTCTACA
* *
16973 GGGGGCCAAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17038 CCCTATCCCTCATCAGACCTCGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
17103 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
17168 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-TGGCCAACAAAAATACAAGGATCACGTCTA
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTA
** * **
17232 CCAAGTTTGGGAACAAAA-TGCCTTTCGAAAAAATTTTAAAAAA-TCTTGAACC-TCAAAAAGTT
259 CCAAGTTTGGGGCCAAAACT-CC-TTCCAAAAAATTTTAAAAAATTC-CAAACCGT-AAAAAGTT
*
17294 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGG
320 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
17359 ACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGA-ATGCAGAAATATGAAGATGTGCCT
385 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCT
* ** * *
17423 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTTGTCTCTCTGGCCGGCATAGTACC
450 AAACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCC
* * * *
17488 CGTCCGCCAGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATA
515 CG--C-CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
* * ** * *
17553 GGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAGAGGAAAACGCGATCGAT
576 AGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGG-GGACCCGACCGAT
* * *
17618 CCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
640 CCCCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGAC
* **
17683 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ***
17748 GGATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTT
770 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * **
17813 GGGGCACCATCGTCGGA-GGCATTGGGGTTCCGGCGATCGG
835 GGGCCACCATCGCCAGACGGCATTGGGGTTCTAGCGATC-G
17853 GGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17918 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
17983 TGCTGCCAGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTT
130 TGCTGCCAGTAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
18047 GTACACTTCGAGTTTTTAGCTAAATTTTTTTAG-GCATGCCAACAAAAATACAAGGATCATGTCT
194 GTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * **
18111 ACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAGTTTGAAAAATTCCGAACCGCAAAAAGTTTTG
258 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCA
*
18176 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
323 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
18241 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CA-GCAAAAATATGAAGATGTGCCTAA
388 ATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACATGCAGAAATATGAAGATGTGCCTAA
* * *
18304 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGGGCCCG
452 ACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
18369 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-
517 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
* * * * * *
18433 GAACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCG
582 G-ACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGA-GGGGACCCGACCGATCCCCG
* * * * * * * * *
18498 TCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGTATGCTAGTTTCATGGGTTGACTTAGG
645 GCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGG
* * *
18563 CATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACC
710 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * *
18628 AAGGGTTGCGACAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
775 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGG-
*
18693 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATCA
838 -CCA----C----CA---TC---G--CC--A--GACGGCATTGGGGTTCTAGCGATCG
* *
18751 GGGGGCTGGGTGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
18816 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
18881 T-CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
18945 TACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA-CTGCGTCTA
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC-ACGTCTA
* * *
19009 CCAAGATTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
259 CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCA
* * *
19074 AAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
323 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
19139 ATTGTATGAATTTACAAGCCATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCCTAAA
388 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAA
** * * * *
19203 CCAACCTATTACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGT----GC
453 CCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGC
* * *
19264 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGA-CTAAGATCG
518 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCA
* * * * * **
19328 GACCAGACCGAGGGTTACGGCAACAAGATTGGTAGCATGCAGAGGGGACTCGGTCGATCCCCGGC
582 GACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGC
* *
19393 TTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGCTTGAATTAGGCA
647 TTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCA
* * * *
19458 TACGGAGTGCATTCCCAGTCTAAGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
712 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * ** *
19523 GGGTTGCGGTAGCACATGCTGGGCT-GAGGAATGTGCTGGTGCCGCATTTTCCTTTCGTCGGGGC
777 GGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTC-TTCACCGGGCC
* * * * *
19587 ATCATCGTCGGATGGCATTGGGGTTC-CGACGATCTG
840 ACCATCGCCAGACGGCATTGGGGTTCTAG-CGATC-G
* * *
19623 GGGGGCCGGGGGGTGTGCGTACATGATATGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
19688 CCTATCCCTTATCAAACCTCGAGAACTCACA-CCCCTTGAAAAAGCTTTTGAGA-TTTACAGGTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTT
* *
19751 TGCTGCCAGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTGAAATGGTCAC-AAATCTT
130 TGCTGCCAGTAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
19814 GTCCACTTCGAGTTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCT
194 GTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
19879 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAACTTTAAAAAAATTCTAAACCGT-AAAAGTTTC
258 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAAATTCCAAACCGTAAAAAGTTTC
*
19943 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAAATTTCACGTGAAGGCTTAAGGGAC
322 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
20007 CATTGTATCAATTTACAAGCCATAAAAATGGCATT-CACATGCAGAAATATGAAGATGTGCCTAA
387 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAA
* *
20071 ACCAACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCT-TGGCCGACGTAGTGCCCG
452 ACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
* * *
20135 CCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTTATTCCCAATCTAAGATCA
517 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
* ** * * * * *
20200 GACCGGACCGAGGGTTGTAGTAGCAGGATCGGTAGCTCGCAGAAGGGGACCCGACCAATCCTCGG
582 GACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGG
* * * * * *
20265 CTTACGTATCCTGCCCCTTTGGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGC
646 CTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGC
*
20330 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
711 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * ** *
20395 AGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTG-TCGGCGCCATATTTTTCTTTACCGGGCC
776 AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCT-GGTGCCGCATTTTTCTTCACCGGGCC
20459 ACCATCGCCAGACGGCATTGGGGTTCTAGCGATCG
840 ACCATCGCCAGACGGCATTGGGGTTCTAGCGATCG
* * * *
20494 GGCGGGTCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCC
1 GG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
20559 CCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
** *
20624 TGCTGCCAGTAGCCACAAAAGTGTTCGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
20689 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAACAAAAATACAAGGATCACGTCTAC
195 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
*
20754 CAAGTTTAGGGCCAAAACTCCTTCCAAAAAAT
260 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
20786 AGAAAATGAG
Statistics
Matches: 2612, Mismatches: 254, Indels: 142
0.87 0.08 0.05
Matches are distributed among these distances:
868 12 0.00
869 133 0.05
870 83 0.03
871 258 0.10
872 233 0.09
873 322 0.12
874 23 0.01
875 277 0.11
876 7 0.00
877 2 0.00
878 2 0.00
879 213 0.08
880 262 0.10
881 3 0.00
882 1 0.00
883 2 0.00
886 2 0.00
889 2 0.00
891 2 0.00
892 2 0.00
893 177 0.07
894 100 0.04
895 2 0.00
896 3 0.00
897 139 0.05
898 331 0.13
899 19 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGCACATGCAGAAATATGAAGATGTGCCTAAACCA
ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCG
CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
AGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGACCCGACCGATCCCCGGCTTAC
GCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
TACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCCACCATC
GCCAGACGGCATTGGGGTTCTAGCGATCG
Found at i:21182 original size:26 final size:26
Alignment explanation
Indices: 21152--21204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142 GTTGACTTAG
* *
21152 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
21178 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
21204 G
1 G
21205 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:26901 original size:879 final size:866
Alignment explanation
Indices: 24060--29709 Score: 6866
Period size: 867 Copynumber: 6.5 Consensus size: 866
24050 TCGGCCCACA
* * * * *
24060 CGTTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGA
1 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA
* * * **
24125 TTGAAGCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATTGGGGCACCAT
66 TTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
* * * * * * *
24190 CGTCAGAGGATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAACGATCGGGGGGGCCGGGG
131 CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATC-GGGGGGCCGGGG
24255 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
24320 TCAAACCTTGATAACTCACACCCCTTTAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
* *
24385 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
24450 TTTTAGCTGAATTTTTTTATACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGC
390 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** * ** * **
24515 CAAAATGTTTTTCGCAAAAATTTTAAAAAATATCAAACCGTAAAAAGTTTTGAAAATCGTGAAAA
455 CAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
24580 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-TATGAATTT
519 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
24644 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCC
584 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** * * * * * *
24709 TATCGATCCACGACTTGTACATCCTGCCTCTCTGGCCGGCGCAGAGCCCACCCGCCCGTCCGCTC
649 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCTT
* ** * **
24774 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCAAGGGT
710 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGT
* ** *
24839 T--GT-----G---G-CAGCACGCATAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
775 TGAGTAGCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCC
* * * *
24893 GTCTGGCCGGTTGAGTGCCCGCACGTT
840 CTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
24920 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGA
1 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA
** * * *
24985 TTGAAACGGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAT
66 TTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
** * * * * *
25050 CGTCGGAGCATCACCGGAGAACCTGATTGATGGCATTGGGA-TTCCAGCGATCATGGGGGTCTGG
131 CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGA-CGATC-GGGGGGCCGGG
25114 GGGTGTGCGCACATGATGTGCGA----TG--GG----T---CCTTATATTGGCCCCCTATCCCTC
194 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
25166 ATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
259 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
*
25231 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAG
324 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * ** * **
25296 TTTTTAGCTGAATTTTTTTATACATTTCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCA
389 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * **
25361 CCAAAATGCCTTTCAAAAAAATTAAAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAA
454 CCAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
25426 AATAGAAAACGAGTCATCTTGCCATGAAAC-TCAACGTGAAGGCTTAAGGGACCATTGTATGAAT
518 AATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
25490 TTAGAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAAATGTACCCAAACCCACCTGCCAC
582 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * ** * * * * *
25555 CCTATCGTTCCACGGCTTATGCTTCCCGCCTCTCTAGACGACGTAGTGCCCGCCCGCCCGCTCGC
647 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT---
* * * * **
25620 CTGTCTGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCATTCTAGGATCAGACCA
709 -TGT-T--TC-----GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
** * * *
25685 GACTGATTGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
765 GACTGAGGGTTG-AGTAGCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* ** *
25750 GCATCCCGCCCCTCTGGCCGGCTGAATGCCCACACGCT
829 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
25788 CGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA
* * * *
25853 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACTGGGGCACCAT
66 TTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
* ** * * * *
25918 CGTTGGAGCATCACCGGAGAACCTGATTGATGGCATTAGGA-TTCCAGCGATCGGGGGGGC-GGG
131 CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGA-CGATCGGGGGGCCGGGG
* *
25981 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
26046 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
** * *
26111 TTATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
26176 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
390 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** *
26241 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAGAGTTTGGAAAATCATGAAAA
455 CAAAA-TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
26306 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATT
519 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
26371 ACAAGCCACAAAATTGGCATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
584 ACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
26436 TATTGATCCATGAG-TTACGCATCCCGCCTCTTTGGTCGACATAGTGCCCGCCCGCCTGCTTGTT
649 TATCGATCCATG-GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTT
* * ** * *
26500 TCATCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTCGA
713 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGA
* * * *
26565 GACAGCAAGATCGCCAGCACACAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCCACCCCT
778 G-TAGCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCT
*
26630 CTGGCCGGCTGAGCGCCCGCACGTT
842 CTGGCCGGCTGAGCGCCCGCACGCT
*
26655 CGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAGGA
1 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA
* * * * *
26719 TTGAAGCAGCACATGTTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCATCGGGGCACCAT
66 TTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
** * * * * * *
26784 -GTCGGAGCATCGTCGGAGAGCCTGATCGATGGCATTGGGATTCCAACGATCGGGAGGGCCGGGC
131 CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATCGGG-GGGCCGGGG
* * * *
26848 GATGTGCGCACATGATGGGCAATGGGTGCCATTGT--TTGGCCCTTATATTGGCCCCCTATCCCT
195 GGTGTGCGCACATGATGTGCGATGGGTG-C-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
26911 CATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAATTTTGCTGCCAGT
258 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
* * * *
26976 AGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGA
323 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
27041 GTTTTTAGTTGAATTTTTTTATACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGT
388 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* **
27106 GCCAAAATGCCTTTTGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGTGAA
453 GCCAAAAT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
27171 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAAT
517 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
27236 TTACAAG-CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
582 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
27300 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGATCGT
647 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGT
* *
27365 TTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGTGTTG
712 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTG
* * * * * * **
27430 CAGTGGTAGGATCGGCAGCACGCAGAGGGGAACCTGATCGATCCCTAGCTTGCGCATCCCACCCC
777 -AGTAGCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCC
27495 TCTGGCCGGCTGAGCGCCCGCACGCT
841 TCTGGCCGGCTGAGCGCCCGCACGCT
*
27521 CATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCC
1 CGTTTCGTGGGTTG----A--C-T-TAG-G--CA---T-A--C---G---A---AGTTCATTCCC
* * * * * *
27586 AGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATACTGGGCTCAGACATGTGCTGGTGC
40 AGTCTAAGATCGGATCAGACCGAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * ** *
27651 CGTATTTTTCTTCGCCGGGTCACTATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
105 CGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGG
* *
27716 G-TTTCGACAATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
170 GATTTCGACGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
27780 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTT
233 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
27845 GAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGCACACTTTTTTCAAAT
298 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
27910 GGTCACAAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTTGCATGTCAACAAAAATA
363 GGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
27975 CAAGGATCACATCTAGCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTTTAAAAAATCTCGA
427 CAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTTC-GAAAAAATTTTAAAAAATCCCGA
** * *
28039 ACCACAAAAAGTTTCAAAAATCGTGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
490 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
28104 GAAGGCTTATGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCACCCAGAAATAT
555 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAT
* * * * *
28169 GAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCGACGACTTGCGCATCCCGTGTCT-TAGG
620 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT-GG
*
28233 CCGGCGTAATGCTCGCCCGCCCGTCCACCCGCTCT-TTTCGTCAGTTGGCTTAGGCATACGGAGT
684 CCGGCGT-A-G-T-GCCCGCCCG----CCCGCT-TGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
28297 TCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGCAGCAGGATCGGCC-GCACGCA-AT
740 TCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTG-AGTAGCAGGATC-GCCAGCACGCAGA-
** ** * * * * * ** **
28360 GGGGGACCCGGTCGATGGCCGACTTGCGCATCCCTCTCCACTGGCCGGCTGAGCACCTACAAACT
802 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * *
28425 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGATCGAAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCG-AGG
* *
28490 -TT-ACGGTAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACC
65 ATTGA-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACC
* * *
28553 A---TC---G--T---CGGAGAACCTGACCGACAGTATTGGGGTTTCGACGATCGGGGGGGCCGG
129 ATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATC-GGGGGGCCGG
* *
28607 GGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCTCTATCCCT
193 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
28672 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
258 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
* * *
28737 AGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGA
323 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
** * * * *
28802 GTTTTTAGCTGTTTTTTTTTTGTGCACGCCAACAAAAATAGAAGTATCGCGTCTA-CAAGTTTGG
388 GTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
28866 GTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAATGTTTCAAAAATCATGA
452 GGCCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
28931 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTATGAGACCATTGTATGAA
516 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
28996 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATACT-ATGATGTGCCTAAACCCACCTACC
581 TTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATA-TGAAGATGTGCCTAAACCCACCTACC
* *
29060 ACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCC
645 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C
* * *
29125 GTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATTGGACCGGACCGA
708 -TT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA
* * ** * * *
29190 GGGTT-ACGGTAGTAGGATCGACAGCACATAGAGGGGGACACGGCCGATCCCCGACTTGCGCATC
771 GGGTTGA--GTAGCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
** *
29254 CTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCT
834 CCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
29287 CATTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGAACCGA-
1 C-GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAG
* * ** * *
29350 AAGTT-ATGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTTGTATTTTTCTTCGCTGGGGCA
64 GA-TTGA-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCA
** * * ** *
29414 CCATCGTCGGAGCATTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATCGGTGGGTCC
127 CCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATCGG-GGGGCC
* * *
29479 GAAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTAT
191 G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
29544 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
254 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
*
29609 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
319 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
29674 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
384 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
29710 TTGCGTATCC
Statistics
Matches: 4174, Mismatches: 480, Indels: 257
0.85 0.10 0.05
Matches are distributed among these distances:
844 13 0.00
846 2 0.00
847 318 0.08
848 103 0.02
849 1 0.00
850 1 0.00
851 2 0.00
854 2 0.00
856 53 0.01
858 4 0.00
859 5 0.00
860 195 0.05
861 3 0.00
862 137 0.03
863 109 0.03
864 2 0.00
865 48 0.01
866 600 0.14
867 768 0.18
868 246 0.06
869 10 0.00
870 4 0.00
871 1 0.00
872 6 0.00
873 3 0.00
874 43 0.01
875 23 0.01
876 196 0.05
877 2 0.00
878 82 0.02
879 425 0.10
880 5 0.00
881 1 0.00
883 1 0.00
884 1 0.00
886 1 0.00
887 1 0.00
889 2 0.00
890 1 0.00
892 28 0.01
893 81 0.02
894 191 0.05
895 196 0.05
896 98 0.02
897 2 0.00
898 2 0.00
899 1 0.00
900 9 0.00
903 1 0.00
904 143 0.03
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGA
TTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
CGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTTCGACGATCGGGGGGCCGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGAGTA
GCAGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
CCGGCTGAGCGCCCGCACGCT
Found at i:30713 original size:26 final size:26
Alignment explanation
Indices: 30663--30715 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
30653 GTTGACTTAG
*
30663 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
*
30689 GCATACGGAGTTCATTTCC-AATCTAA
1 GCATACAGAGTTCA-TTCCTAATCTAA
30715 G
1 G
30716 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:31586 original size:26 final size:26
Alignment explanation
Indices: 31557--31609 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31547 GTTGACTTAG
*
31557 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
* *
31583 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
31609 G
1 G
31610 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:32503 original size:26 final size:26
Alignment explanation
Indices: 32453--32505 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32443 GTTGACTTAG
* **
32453 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
32479 GCATACGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
32505 G
1 G
32506 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:33384 original size:26 final size:26
Alignment explanation
Indices: 33355--33407 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33345 GTTGACTTAG
33355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33407 G
1 G
33408 ATTAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34275 original size:26 final size:26
Alignment explanation
Indices: 34245--34297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34235 GTTGACTTAG
* *
34245 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
34271 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
34297 G
1 G
34298 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:35173 original size:25 final size:26
Alignment explanation
Indices: 35139--35190 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
35129 GTTGACTTAG
35139 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
35164 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35190 G
1 G
35191 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:36052 original size:26 final size:26
Alignment explanation
Indices: 36015--36067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36005 GTTGACTTAG
*
36015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36041 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36067 G
1 G
36068 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36936 original size:26 final size:26
Alignment explanation
Indices: 36906--36956 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
36896 CTTGACTTAG
*
36906 GCATACGGAGTTCATTCCTAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
36932 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
36957 AGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:37560 original size:894 final size:893
Alignment explanation
Indices: 29751--39867 Score: 12781
Period size: 894 Copynumber: 11.3 Consensus size: 893
29741 GCCCGCACGC
* * * *
29751 TTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCAGAAGGAGTTCATTCCTAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** ** * * *
29816 GAACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTTAGGAATGAGCTGGTGCCACATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * ** *
29881 TTGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGATTCGA-CG
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTCCAGCG
* *
29945 ATCGGGGAGGTCGGGGGGGTGTGCGTACAT-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
195 ATCGGGG-GG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
***
30009 TGGCCCCCTATCCCTCATCAAACCTTGTGAACTCACACCACCTTAAAGAGCATTTGAGATTTTAC
258 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTAC
* * * *
30074 AGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCTCAAAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
30139 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
387 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
30204 TCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT
452 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
30269 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
517 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * * *
30334 GACCATTGTATGAATTTACAGGCCATAAAAATTGCATTAGCATGTAGAAATATAAAGTTGTGCCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * ** *
30399 AAACCCAGCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCCCTGGCCAGCATAGTGCC
647 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT---
* * *
30464 CGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTA
709 -----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * **
30529 AGATCAGG-TCAGACTGAGGGTTACAGCAGCAGGATCGGTAGCACATAGTGGGGGACCCGGTTGA
769 AGATC-GGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* * *
30593 TCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
833 TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
30654 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
30719 GGACCAGACC-AAGGTTGCGGCAGCACATACTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** ** * *
30783 TCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACAGCATTGGGGTTTC-GACG
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAG-CG
* * *
30847 ATC-----G--GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTT
195 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
30905 GCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTTAAAAAGCATTTGAGATTTTACA
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCC-TTAAAGAGCATTTGAGATTTTACA
*
30970 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACAC-TTTTTCAAATGGTCACAAAAT
323 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
31034 CTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAAAAAAAATACAAGGATCATG
388 CTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
31098 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
452 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
31163 TTCGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
517 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* **
31228 GACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCAACCAGAAATATGAAGATGTGCCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
31293 AAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCT
647 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--TG--GCG-T
* * * * **
31358 CGCCTACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTAGA
706 AG--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * **
31423 AGATCAGACTGGA-TCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTAGA
769 AGATCGGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* * ** * *
31487 TCCCCGGCTTACGCAT-CTCGCCTCTCTGGCCGGCTGAGCGCCAACACGCTCGTTCCGTGTG
833 TCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
31548 TTGACTTAGGCATACGGAGTTCAATCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * *
31613 GGACCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGCCCATGCGATGGTGCCGCATTTTTCC
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-C
* * * * * * *
31678 TT-GTCGGGGCACCATCG-CTAGAGCATTGTCGGAGAACCTGACTGACGACATTGTGGTTCCGGC
130 TTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGC
*
31741 GATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
194 GATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
31806 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
258 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAC
*
31871 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAA
31936 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
386 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * * * * ** * * *
32001 GTCTACGAAGTTTGGGGCAAAAACTCATTCCGAAATAATTTTAAGAAATTCAAAATCGTAAAAAC
451 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
** *
32066 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
516 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
32131 GGACCATTGTACGAATTTATAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
32196 TAAACCCATCTACCACCCTATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
646 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGC
* * * *
32261 CCGCCCGCGCGCTCATTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATGGG
711 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * ** * * ** *
32326 ACTAGACTGAGGGTTACGGTAGTAGGATCGATAGCATGCAGAGGGGGAACCGGTTGATCCCCGGT
776 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGC
** * * * * * *
32391 TTATGCGTCTTGCCCCTCTAGCCGGCTGAGTGCCCGCACGCTCCTTTCGTGTG
841 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
32444 TTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTAATTCCCAATCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
32509 GGACCGGACTGAGGGTTGCGGTAGCACATGCTTGGCTCGAGAATGTGCTGCTGCCGCATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * ** *
32574 TCGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGATGGGCGGCATTGGGGTTCC-GACG
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAG-CG
32638 ATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
195 ATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
32703 TGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
258 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
32768 AGGTTTGTTGCTAGTAGCCATGAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGATCACAAAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
32832 TCTTGTACACTTTGCGTTTTTAGAC-GAAATTTTTTGTGCATGCCGAC-AAAATACAAGGATCAT
387 TCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * **
32895 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAAAATCCAAAACCGCAAAAAG
451 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
*
32960 TTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
516 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
33025 GGACCATTATATGAATTTATAAGCCGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
33090 TAAACCCACTTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
646 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTA--G-
* * *
33155 TCGCCCTCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCT
708 T-G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * ** ** **
33220 AAGATCGGACTGGGCTGAGGGTTGCAGTAGCAACATCGATAGCACGCAGAGGGGGACCCAACCGA
768 AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* *** ** * * *
33285 TCCTCGGCTTGCGCAT-CTCGCCCCTCTGGTAAGCTGATTG-CTGACACGTTCGTTCCGTGGG
833 TCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCGTTTCGTGGG
*
33346 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
33411 AGACTGGACCGAGGGTTGCGGCAGAACATGCTGGGGTCGGGCTTGTGCTGGTGCCACATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * *
33476 TCACCGAGGCACCA---TC---GC-T----AGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
*
33530 TCAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
196 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
33595 GCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAG
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAG
*
33660 GTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACCTTTTTCAAATGGTCACAAAAT
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
33724 CTTGTGCACTACGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC-AAAATACAAGGATCACGT
388 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
33788 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATATT-AAAAATCTCGAACCACAAAAAGTT
453 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
** *
33852 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
518 TCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
33917 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGCTGTGCCTA
583 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
33982 AACCCACCTACCACCCTACCGGTCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCC
648 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG--C
* * *
34047 GCCTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGACTTCATTCCCAGTCTAA
711 -CC-GCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * **
34112 GATCGAACCGGACTGAGGGTTGCGGCAGCAAGATTAGCAACACACAGAGAGGGACCCGATCGATC
770 GATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
* * * *
34177 CCCGGCTTGCGCATCCCGCCACTCTGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGG
835 CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
34236 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
34301 GGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * ** * ** * * **
34366 TTGCCGGGGCACTATCACCAGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGAGTT-TTGACG
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAG-CG
*
34430 ATCGAGGGGGCCGGGGGGAGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATA
195 ATCG-GGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
34495 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTA
257 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTA
34560 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
321 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
34625 ATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTTATGCATGCCAACAAAAGTACAAGGATCAC
386 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * * *
34690 GTCTGCCAAGTTTGGGGTCAAAACTCC-TTCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAG
451 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* *
34754 TTTC-AAAATCGTG-AAAATAGAAAATGAGTCATCTTACCAAT-AAACTTCACGTGAAGGCTTAA
516 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAA
** * *
34816 GGGACCATTGTACAAATTTACAATCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGC
580 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
34881 CTAAACCCACCTACCACCCTATCGAT-CACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGCG
645 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG
* * * *
34945 ACCGCCCGCCGCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATC
710 CCCGCCCGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
35010 GGA-CAGGA-TCGAGGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCAATCCC
774 GGACCA-GACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * *
35073 CGGCTTGTGCAT-CTCGCCCTTCTGGCCGGCTGAGCACCCGCTCGCTCGTTTCGTGGG
837 CGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
35130 TTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
35194 GAACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCA-TTTTC-
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
35257 T--TC---G------C--CGGAGCATCGCTGGAGAACCTGACCGACGGCATTTGGGTTTCGGCGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
* * * *
35309 TCTGGGGGG-C-GGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATCG
196 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
35372 GCCCCCTATCCCTCATTAAACCTCAAGAACACATGC-CCCCTTAAAGAGCATTTGAGATTTTA-A
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCA--CACCCCTTAAAGAGCATTTGAGATTTTACA
* * * * *
35435 GATTTGCTGCAAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAACGATCACAAAAT
323 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * * **
35500 CTTGTACGCTTCAAGTTTTTAGCTGAATGTTTTTGTGCAGGCCGACAAAAATTCAAGGATCATAT
388 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * ** *
35565 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAATGGAAAAAGGT
453 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GT
* ** *
35630 TT-GAAAATTATGAAAAATAGAAAATGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGG
517 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
35694 GACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
35759 AAAGCCACCTACCACCCT-TACGATCCACGGCTTGCGCATCCCGTCTCTCTTGCTGGCATAGTGC
647 AAACCCACCTACCACCCTAT-CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGC
*
35823 CCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
711 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
35888 ACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCAC-CTAGAGGGGGACCCAGG-CAATCCTCG
776 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGC-AGAGGGGGACCC-GGCCGATCCCCG
* * * * * *
35951 GCTTGCGCATCCCGCCACTCTGGCCGACTGAGTGCACGCACGCTCATTTCGTGGG
839 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
36006 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * **
36071 GGATTGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** *
36136 TTATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GTGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
* *
36200 TCGGGGGGCCGGGGGGTGTGCGCACATGATGT--GATTGGTGCTCGTACTTGGCCCTTATATTGG
196 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
36263 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGG
261 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGG
36328 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
325 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
36393 TGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
390 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
36458 ACCATGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTT
455 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * * *
36523 GAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
520 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
36588 CATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
585 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * *
36653 CCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTTGCTGGCATAGTGCCCGC
650 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGC
* *
36718 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
715 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
** * * * * * * * *
36783 GACAAAGGATTGTGGCAGCACGATTGGTAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTAC
780 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC
* * *
36848 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGC
845 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
36897 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTATGCATATGGAGTTCATTCCCAGTCTAAGATT
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
36962 GGACCCGACCGAAGGTTGCGACAGCACATGCTGGGC-CTGGGCATGTGCTGGTGCCGCATTTTTC
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTC
* *
37026 TTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCAGCG
130 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCG
*
37091 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTG
195 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
37156 GCCCCCTATCCTTCATCAAACCTTAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGG
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
37221 TTTGCTGCCAGTA-CCATTAAAATGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCAAAAAAT
325 TTTGCTGCCAGTAGCCATT-AAA-GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
37285 CTTGTACACTTCGAGTTTTTAGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGT
388 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
37350 CTACCAAGTTTAGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAACTCCCGAACCGCAAAATGT
453 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA-TCCCGAACCGCAAAAAGT
* * *
37415 TTTAAAAATC-TGAAAAATAGAAAATGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAAG
517 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * *
37479 GACAATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACGTAGAAATATGAAGATGTACCT
582 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * *
37544 AAACCCACCTACCACCCTATC-ATTCCATGGCTTGTGCATCCCGTCTCTTTGGCTGACGTAGTGC
647 AAACCCACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGC
* *
37608 CCGCCCGACCGCCCGTACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCT
711 CCG--C--CCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * * * * * *
37673 AAGATTGGATCAGACCAAGGGTTGTGGCTGTAGGATTGGCAGCATGCAGAGGAGGACCCGGCCGA
768 AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGA
* * * * * * *
37738 TCCCCGACCTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCATGGG
833 TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
37799 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
37864 GGACCAGACTGAGGGTTAC-G-AGCACATGCTGGGCACGGGCATGTGCTGGTGCCGCATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * ***
37927 TCATCGGGGCACCATCGTCGGAGCATCGTC-GAGAACCCGACCGACGACATTGGGGTTTTGGCGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
* * *
37991 TCGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATCGGTGCTGGTACTTGGCCCTTATATTG
196 TCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
38056 G-CCCCTATCCCTCATCAGACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAG
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAG
* *
38120 GATTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
38185 TTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
*** * *
38250 TACCAA-TTCAAGGCCAAAACTCCTTTCGAAAAAATTGTAAAAAATCCCGAACCGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
*
38314 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGA
519 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
38379 CCACTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGAGCGTAA
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * *
38444 ACCCACCTACCACACTATCGATCCACGGCTTGAGTATCCCGTCTCTCTGG-TCGACGTAGTGCTC
649 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCC
* * * * ** * *
38508 GCCTGCCCGCACGTTTCATCAGTTGGCTTACACATACAGAGTCCATTCCCAGTCTAAGATCGGAC
713 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * * **
38573 TGGACTGAGGGTTACGGC-GACAGGACCGGACCGAGGGTTACAGCGCGCAGAGGGGGACCCGATC
778 CAGACTGAGGGTTGCGGCAG-CAGGATCGG--C-A--G---CA---CGCAGAGGGGGACCCGGCC
* * * * *
38637 GATCCCTGGCTTGCGCAT-CTCGCCTCTCTGGCAGGCTGAGCGCCCCGCACGCTCATTTCATGGG
831 GATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGG
38701 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A-----A---T----T-
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
38745 -----GGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCTTGTTCTGGTGTCGTATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * * * *
38805 TCGTCGGGGCACCATCACCGAAGCATCGCTGGAGAACCTGACCGACGACATTAGGGTTCTAGTGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
* *
38870 TCGAAGGGGG-C-GGGGG-GTCCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
196 TCG--GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
38932 GGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAG
259 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
38996 GTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
39061 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * * * * * *
39126 TACCAAGTTCAGGACCAAAACT-CGTTCCAAAAAAATTTAAAAAATCCTGAACCGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
39190 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGA
519 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
39255 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTTACAT--AGAAAGATGAAGATGTGCCT
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTG--GCATGCAGAAATATGAAGATGTGCCT
* * * * *
39318 AAACCCACCGACCACCCTATCGATACAAGGCTTACGCATCCCGTCTCTCTAG-TCGGCGTAGTGC
647 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGC
* * * ** * *
39382 CTGCCCGTCAGCCCGTTCATTTTATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
711 CCG-CC--C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
39447 TCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCC
772 TCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * * *
39512 TGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGA
837 CGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
39569 TTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
39634 GGACCAGACCGTGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCT
66 GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
39699 TCATCGGGGCACCATCGTCAGAGCATCACTGGAGAACCTGACCGACGGTATTAGGGTTCCAGCGA
131 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
* * * * *
39764 TCGGGGGGGTCGGGGGGGTGTACGCATATTATGTGCGATGGGTACTGGTACTTGGCCCTTATATT
196 TC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
39829 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
259 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
39868 TACCTGTCTC
Statistics
Matches: 8082, Mismatches: 919, Indels: 431
0.86 0.10 0.05
Matches are distributed among these distances:
868 52 0.01
869 54 0.01
870 1 0.00
871 2 0.00
872 2 0.00
873 139 0.02
874 128 0.02
875 23 0.00
876 667 0.08
877 207 0.03
878 138 0.02
879 35 0.00
880 73 0.01
881 8 0.00
882 1 0.00
884 4 0.00
885 2 0.00
886 11 0.00
887 1 0.00
888 4 0.00
889 8 0.00
890 762 0.09
891 837 0.10
892 108 0.01
893 158 0.02
894 1484 0.18
895 256 0.03
896 336 0.04
897 256 0.03
898 233 0.03
899 181 0.02
900 170 0.02
901 134 0.02
902 856 0.11
903 387 0.05
904 364 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGA
TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
Found at i:37838 original size:26 final size:26
Alignment explanation
Indices: 37808--37860 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
37798 GTTGACTTAG
37808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
37834 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
37860 G
1 G
37861 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:39608 original size:26 final size:26
Alignment explanation
Indices: 39578--39630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
39568 ATTGACTTAG
*
39578 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
39604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
39630 G
1 G
39631 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:40986 original size:26 final size:26
Alignment explanation
Indices: 40957--41012 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
40947 TTGGTTGGCT
40957 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
40983 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
41009 TAAG
1 TAAG
41013 ATCAGACCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:43116 original size:874 final size:872
Alignment explanation
Indices: 39892--45834 Score: 7192
Period size: 900 Copynumber: 6.7 Consensus size: 872
39882 GTCGACAGAA
* * * * *
39892 TGCCCGCCCGCCTGTCCGCTCATTTCGTCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTA
1 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * * *
39957 AGATCAAACCGGACCGAGGATTGCGGTAGCAGTATCGATAGCACGCAGAGAGGAACCCGATCGAT
66 AGATC-AACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGAT
* * *** * *
40022 CCCCGGCTTGCGTATCTCGCCCCTCTGGCCAAATGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * ** * *
40087 TTAGGCATATGGAGTTCATTCCCAGCCTAAGATAAGACCAGACCGAGGGTTGCGGCAGCACATGT
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGC
* * * ** * **
40152 TGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGAAGCATCATCG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGCCG
* * * * *
40217 GAGAACCTGACAGGCGGCATTGGGGTTCCGACAATCAGGGGGG-C------TGTGCACACATGAT
325 GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
40275 GTGCGATGGGTGCTGTTACTTGGCCCTT-TATTCGCCCCCTATCCCTCATCAAACCTCGAGAACT
390 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
40339 CACACCCCCTTAAAGACCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
455 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
40404 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCCAATTTTTAGCTGAATTGTT
520 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
40469 TTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
585 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** *
40534 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
650 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
40599 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATG
715 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
40664 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
780 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
*
40729 GCGCATCCCGTCTCTCTGGCCGACGTAG
845 GCGCATCCCGTCTCTCTGGCCGGCGTAG
*
40757 TGCCCACCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
1 TG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * ** * * *
40822 TCTAAGAGTGGACCGGATCAAGAGTTGTGGCAGTAGGATCAGCAGCACATAGAGGGGGACCCGAT
62 TCTAAGA-TCAACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAT
* * ** * *
40887 CGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTAGCTGAGTGCCCGCACGCTCGTTCCGTTGGT
126 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-T-G-
* *
40952 TGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
188 -GG--T-----T--A-A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
41017 GACCAGACCGAGGATTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
230 GACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
41082 CGT-CGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCAGCATTGGGGTTTCGACGA
295 C-TCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGA
*
41146 TCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATT
359 TCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
41211 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
423 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
41276 GGTTTGCTGCCAGTAG-CA--AAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAAT
488 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
41338 CTTGTACATTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACG
553 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACG
* * * *
41402 TCTACCAAGTTTGGGGCCAAAACTTCATCTGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAG
617 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAG
* *
41466 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAG
681 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
**
41531 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAACCAGAAATATGAAGATGTGCC
746 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
41596 TAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
811 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
41658 T----GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTA
1 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * *
41719 AGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCATGTAGAGGGGGACCCGGGT-GA
66 AGATCA-ACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GATCGA
* * * * * *
41783 CCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGATTCGTGGGTTTA
129 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAA
* *
41848 CTTTGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
* * *
41913 CTGGGCTCAGGCATGTGCTGGTGCCAG-ATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGC
259 CTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGC
* * *
41977 CGGAGAACCTGACCAGCGGCATTAGGGTTTCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
323 CGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACAT
* *
42042 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAA-CTGTGAG
387 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAG
42106 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
451 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * * *
42171 TTGGAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGTGTTTTTAGCTAAAT
516 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
42236 TTTTTTTTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTTGGGCCAAAACCCCTTC
581 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
42301 CGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGCTTCAAAAATCTTGAAAAATAGAAAACGAG
646 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
42366 TCGTCTTGCCATGAAGCTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAA
711 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
42431 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACA
776 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
* * *
42496 GCTTGCGCATCTCGCCTCTCTGGTCGGCGTAG
841 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
42528 AGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
1 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * *
42593 AGATTGAACCAAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGAGGGACCCGATCGAT
66 AGA-TCAACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGAT
* * *
42658 CCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTAAC
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * **
42723 TTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGC
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGC
** * * * *
42788 TGCACTCAGGAATGTGCTGGTGTCACATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGCCG
260 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGCCG
* * * *
42853 GAGAACCTGACCGGTGACATTGGGGTTTCGATGATCGGGGGGGCCGGGTGGGGTGTGCACACATG
325 GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATG
* * ** * *
42918 ATGTGCGATAGGTGCTTGTACTTTTCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAA
388 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
42983 CTGACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT
453 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
43048 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGATTTTTTAGCTGAATTT
518 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* ** * * *
43113 TTTTGTGCTTGTGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCA
583 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** * *
43178 AAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTG
648 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
43242 GTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
713 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
43307 TGGCATCGGCATGAAAAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATACACGGC
778 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
* *
43372 ATGCGCATCCTGTCTCTCTGGCCGGCGTAG
843 TTGCGCATCCCGTCTCTCTGGCCGGCGTAG
*
43402 TGCCCGCCTGCCTGCCCACCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
1 TGCCCG-C--CC-GCCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
43467 GTCTAAGACCAGACCAGACCGAGGGTTGTAGCAGTAGGATTGGTAGCACGTAGAGGGGGACCCGG
61 GTCTAAGATCA-ACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA
* * * * *
43532 TCGATCCTCGGCTTACGCATCGCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
125 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
43597 TTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
190 TTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C
* * *
43662 AGACCGAACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGGTGGTGCTGCATTTTTCT
234 AGA-C---C-GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * *
43727 TCGT-CAGGGCACCATCGTCGGAGCATTGCCGGAGAACTTGCCCGACGGCATTGGGGTTCCGATG
294 TC-TCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACG
* * *
43791 ATAGGGGGCTGG--GGGCGTGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
358 ATCGGGGG--GGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
43854 ATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGGATTTGAGATTTT
420 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* ** *
43919 ACAGGTTTGCTACCAACAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAA
485 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
43984 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGGATGCCAACAAAAATACAAGGATGA
550 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * *
44049 TGTCTACCAAGTTTGGGTCCAAAACTTCTTTCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAA
615 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAA
*
44113 AGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
679 AG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
44177 AAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAATATGAAGATGT
743 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * ** * *
44242 GCCTAAACCCACCTACCACCATGTCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAG
808 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
44307 TGCCCGCTCGCCCGCCCACCCAGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
1 TGCCCGCCCGCCCG-CC-CGC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * *
44372 TCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCAAGATTGGCAGCATGCA-AGGGGGACCCG-G
62 TCTAAGATC-AACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAT
* * *
44435 CTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACACTAGTTTCGTGCG
126 C-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC--CGCAC--G---C-T-CG
* * *
44500 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
181 -T---TT---CGT--GG-GTT-A-----ACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATC
*
44565 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCT
229 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * *
44630 TCAT-TGGAGCACCATCGTCAGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
294 TC-TCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACG
* *
44694 ATCGGGGGGG-CAGGGGGTGTGCGCACATGATGT-TGATGGGTGCTGGTACTTGGCCCTTATATT
358 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
44757 GTCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
423 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
44822 GGTTTGCTGCCAGTAGCCACTAAAGTGTTTCAAATGGTGACACTTTTTTCAAATGGTCACAAAAT
488 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
44887 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
553 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* * * * *
44952 CTACCAGGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTT
618 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTT
** *
45017 TCGTAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
683 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
45082 ACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGTTGTGCCTA
748 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
45147 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTTTCTGGCCGGCATAG
813 AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
45207 TGCCCACCCGCTCGCCCGCCCGCTAC-TTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCA
1 TG----CCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * ** * * *
45271 GTCTAAGATCAGACTGAACCGAGGGTTGCAGCAGCAGGATTAGTAGCACACAAAGAGAGACCCGA
61 GTCTAAGATCA-ACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA
* * * * * * * *
45336 CCGATCCCCAGCTTGCTCATCCCG-CCCTATGGCCGGTTGAGCACTCGCACGCTCGTCTCGTGGG
125 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
45400 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATC
190 TTAACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C
* * * *
45465 AGATCAGACCGAGGGTTGTGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT
233 ----CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** *
45530 T-TGCTTGGGCACCA---TC---GC-T----GGAGAACCTGACCGACGGCATTGGGGTTTCGACG
294 TCT-CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACG
* *
45583 ATCGGGGGGGCCGGGGGATGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
358 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
**
45648 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCGTACCCCCTT-AAGAAGCATTTGAGATTTTAC
423 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTAC
* * *
45712 AGGCTTGCTGCCAGTAGCAATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
487 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
45777 TCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
552 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
45835 CCCGCCCGCC
Statistics
Matches: 4402, Mismatches: 499, Indels: 328
0.84 0.10 0.06
Matches are distributed among these distances:
865 2 0.00
866 2 0.00
867 281 0.06
868 4 0.00
869 157 0.04
870 325 0.07
871 3 0.00
872 1 0.00
873 4 0.00
874 505 0.11
875 292 0.07
876 4 0.00
877 2 0.00
878 5 0.00
879 189 0.04
880 5 0.00
881 3 0.00
882 4 0.00
883 4 0.00
884 2 0.00
886 2 0.00
887 5 0.00
889 45 0.01
890 27 0.01
891 202 0.05
892 4 0.00
893 151 0.03
894 5 0.00
895 149 0.03
896 3 0.00
897 2 0.00
898 5 0.00
899 4 0.00
900 599 0.14
901 387 0.09
902 15 0.00
903 207 0.05
904 459 0.10
905 278 0.06
906 1 0.00
907 4 0.00
908 4 0.00
910 1 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 1 0.00
916 3 0.00
919 1 0.00
921 2 0.00
922 3 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 4 0.00
929 28 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAACCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATC
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAG
Found at i:43642 original size:26 final size:26
Alignment explanation
Indices: 43606--43658 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
43596 GTTGACTTAG
*
43606 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
43632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
43658 G
1 G
43659 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:44538 original size:26 final size:26
Alignment explanation
Indices: 44509--44561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
44499 GTTGACTTAG
44509 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
44535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
44561 G
1 G
44562 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:46427 original size:637 final size:626
Alignment explanation
Indices: 45208--46471 Score: 1675
Period size: 626 Copynumber: 2.0 Consensus size: 626
45198 CCGGCATAGT
* *
45208 GCCCACCCGCTCGCCCGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGT
1 GCCCACCCGCCCGCCCGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGC
* * *
45273 CTAAGATCAGACTGAACCGAGGGTTGCAGCAGCAGGATTAGTAGCACACAAAGAGAGACCCGACC
66 CTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGATGAGCAGCACACAAAGAGAGACCCGACC
* ** * * *
45338 GATCCCCAGCTTGCTCATCCCGCCCTATGGCCGGTTGAGCACTCGCACGCTCGTCTCGTGGGTTG
131 GATCCCCAGCTTGCGCATCCCGCCCTATGGCCGACTGAGCACTCGCACACTCGTCTCGCGGGTTA
*
45403 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGA
196 ACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGA
* * * * * * * *
45468 TCAGACCGAGGGTTGTGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTG
261 CCAGACCAAGGGTTGCGGCAGCACATGCTGGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCG
*
45533 CTTGGGCACCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG
326 CTGGGGCACCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG
45598 GGATGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
391 GGATGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
**
45663 ATCAAACCTCGAGAACTCGTACCCCCTTAAGAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
456 ATCAAACCTCGAGAACTCACACCCCCTTAAGAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
* *
45728 GCAATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAG
521 GCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAC
*
45793 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAA
586 ATTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTACAA
* * * *
45834 GCCCGCCCGCCCGCTCGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
1 GCCCACCCGCCCGCCCGCCCGCTAC-TTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAG
* * * * * *** * * * *
45898 CCTAAGATC-GAACAGGACCGATGGTTGCGGTAGTAGGATCGA-CAGCATGTAGAGGGGGACCTG
65 CCTAAGATCAG-ACAGAACCGAGGGTTGCAGCAGCAGGAT-GAGCAGCACACAAAGAGAGACCCG
* * ** * * *
45961 ACCGATCCCC-GACTTGCGCATCCGGCCCTCTGGCCGACTGAGTGC-CGGTACACTGGTTTCGCG
128 ACCGATCCCCAG-CTTGCGCATCCCGCCCTATGGCCGACTGAGCACTC-GCACACTCGTCTCGCG
* * * *
46024 GGTTAACTTACGCATA-GAGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAG
191 GGTTAACTTACGCATACG-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAG
* * *
46088 ATCGGACCCGACCAAGGGTTGCGGCAGCACATGTTGGGCCCAGGCATGTGCTGGTGCCGCATTTT
255 ATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCCCAGGCATGTGCTGGTGCCGCATTTT
*
46153 TCTTCG-TCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG-TTCT
320 TCTTCGCT-GGGGCACCA---TC---G---C-T-GGAGAACCTGACCGACGGCATTGGGGTTTC-
* * *
46216 GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
372 GACGATCGGGGGGGCCGGGGGATGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
46281 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAAG-AGCATTTGAGATT
437 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAAGCATTTGAGATT
* * * *
46345 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCAC
501 TTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
46410 AAAATCTTGTACACTTCGACATTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAA
566 AAAATCTTGCACACTTCGACATTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAA
46471 G
1 G
46472 GATCATGTCT
Statistics
Matches: 551, Mismatches: 66, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
625 6 0.01
626 271 0.49
627 1 0.00
629 2 0.00
632 1 0.00
635 1 0.00
636 9 0.02
637 257 0.47
638 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (626 bp):
GCCCACCCGCCCGCCCGCCCGCTACTTTCGTCGGTAGGCTTAGGCATACGGAGCTCATTCCCAGC
CTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGATGAGCAGCACACAAAGAGAGACCCGACC
GATCCCCAGCTTGCGCATCCCGCCCTATGGCCGACTGAGCACTCGCACACTCGTCTCGCGGGTTA
ACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGA
CCAGACCAAGGGTTGCGGCAGCACATGCTGGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCG
CTGGGGCACCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG
GGATGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAGAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
GCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAC
ATTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAA
Found at i:46959 original size:26 final size:26
Alignment explanation
Indices: 46930--46982 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
46920 GTTGACTTAG
46930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
46956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
46982 G
1 G
46983 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:47584 original size:893 final size:894
Alignment explanation
Indices: 45842--47735 Score: 2864
Period size: 893 Copynumber: 2.1 Consensus size: 894
45832 AAGCCCGCCC
* *
45842 GCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * ** * *
45907 GAACAGGACCGATGGTTGCGGTAGTAGGATCGACAGCATGTAGAGGGGGACCTGACCGATCCCCG
66 GAATAGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGAGGGGGACCAGACCGATCCCCC
* * * * *
45972 ACTTGCGCATCCGGCCCTCTGGCCGACTGAGTGCCGGTACACTGGTTTCGCGGGTTAACTTACGC
131 ACTTGCGCATCCCGCCCTCTGGCCGACTGAGCGCCCGTACACTCGTTTCGCGAGTTAACTTACGC
* * * *
46037 ATAGAGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCCGACCA
196 ATAGAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCA
* * * * *
46102 AGGGTTGCGGCAGCACATGTTGGGCCCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
261 AGGGTTGCGGCAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCA
* * * * *
46167 CCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC
326 CCATCGTCAGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCC
46232 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
391 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
46297 CTCATCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
456 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
46362 GTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
521 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTTC
* * *
46427 GACATTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCATGTCTACCAAGTTTG
586 GACATTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTG
*
46492 GGGATAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG
651 GGGATAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG
*
46557 AAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGA
716 AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGA
* *
46622 ATTTACAAGCCATAAAAATAGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACATACC
781 ATTTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAACATACC
* * * *
46687 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGGTGTAGT
846 ACCCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
*
46736 GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA-GCTATACGGAGTTCATTCCCAGTCTAAGAT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** *
46800 TGGATTGGATTGAGGGTTGCAACAGCAGGATCGGTAGCATGTAGAGGGGGACCAGGCCGATCCCC
65 CGAATAGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGAGGGGGACCAGACCGATCCCC
* * * * * * *
46865 CTCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTTGTGAGTTGACTTAG
130 CACTTGCGCATCCCGCCC-TCTGGCCGACTGAGCGCCCGTACACTCGTTTCGCGAGTTAACTTAC
* *
46930 GCATACG-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
194 GCATA-GAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGA
* * * *
46994 CCGAGGGTTGCGGCAGCGCATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCATG
258 CCAAGGGTTGCGGCAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCACATTTTTCTTCATCAGG
*
47059 GCACCATCGTCGGAGCAT-GCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGG
323 GCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGG
47123 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
388 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
47188 T-TCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
453 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
47252 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAAC
* ** *
47317 TTTGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGT
583 TTCGACATTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGT
* * * *
47382 TTGGGGCA-AAATCTCAC-TCCAAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTTGAAAA
648 TTGGGG-ATAAAACTC-CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
* *
47445 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTG
711 TCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTG
* * *
47510 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGCCTAAACCAAC
776 TATGAATTTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAAC
* * *
47575 CTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGTCGATGTAGT
841 ATACCACCCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
* *
47629 GCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTTTAA
1 G----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
47694 GATCAAATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCA
62 GATCGAATAGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCA
47736 CGCACGCTCA
Statistics
Matches: 895, Mismatches: 95, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
893 407 0.45
894 232 0.26
895 165 0.18
896 1 0.00
897 88 0.10
898 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GAATAGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGTAGAGGGGGACCAGACCGATCCCCC
ACTTGCGCATCCCGCCCTCTGGCCGACTGAGCGCCCGTACACTCGTTTCGCGAGTTAACTTACGC
ATAGAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCA
AGGGTTGCGGCAGCACATGCTAGGCCCAGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCA
CCATCGTCAGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATCGTCACAAAATCTTGTAAACTTC
GACATTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTG
GGGATAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG
AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGA
ATTTACAAGCCATAAAAATAGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCAACATACC
ACCCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGATGTAGT
Found at i:48658 original size:26 final size:26
Alignment explanation
Indices: 48628--48680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
48618 GTTGACTTAG
*
48628 GCATACGAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
48654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
48680 G
1 G
48681 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:50423 original size:26 final size:26
Alignment explanation
Indices: 50394--50446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
50384 GTTGACTTAG
50394 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
50420 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
50446 G
1 G
50447 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:52477 original size:899 final size:898
Alignment explanation
Indices: 47892--54222 Score: 8623
Period size: 899 Copynumber: 7.1 Consensus size: 898
47882 TCTTCGTCGG
* *
47892 GGCATTGGGGTTCTGGCGATCGGGGTGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
47957 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
48022 AGCATTTGAGATTTTACAGGCTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
48087 TCCAAATGGACACAAAATCTTGTCCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
48152 AAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
48217 CTCGAACCGCAAAAAGTTTTGAAAATCAG-GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
325 CCCGAACCGCAAAAAGTTTTGAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
48281 TCACGTGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
48346 AAAGATGAAGATGTGGCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * ** * *
48411 TCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTTTTGGGTTAGCTTAGGCATACG
519 TCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * * * *
48476 GAGTTCATTCCCAATCTAAGATTAGAACAGACCGAGGGTTGCGGCTGCAAGATCAGCAGCACGTA
580 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * *
48541 GAAGGGGACCCGATCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
645 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACG
* * * * *
48606 TTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCGTCCCCAGTCTAAGCATACGGAGTTCATTC
710 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
48671 CCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGGTTGGGCATGTGCTGGT
775 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
48736 GCCGTATTTTTCTTCGTCGGGGCTCCATCGCCGGAGCATCG-CTGGAGAACCTGACCGAC
840 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTC-GGAGAACCTGACCGGC
*
48795 GGCATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
48860 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
48925 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
48990 TTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAACA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
49055 AAAATACAAGGATCACGTCTACCAAGTTTCGGGAAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * * *
49120 CCCTAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTT
325 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * ** * *
49185 CACGTCAAGGCTTAAAGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACGTAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
49250 AATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
*
49315 CTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGG
520 CTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * *
49380 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG
581 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * * * *
49445 AGGGGGACCCTA-CTAATCCTCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACG
646 AGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACG
49509 CTCGTTTCGTGGGTTGACTTAGGCATAC--AG---------AG--T-----T-C--A-TTC--T-
710 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
49549 -CAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
775 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
49613 GCCGCATTTTTCTTTGTTGGGGC-GCAT---C---G--T--T-GGAGAACCTTACCGGC
840 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGGC
* *
49660 GGCATTGGGGTTCCGGCGAT-AGGGGGCCGGGGGGATGTGCGCACATGATGTGAGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTG
* *
49724 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAA
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
49788 AGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCGATTAAAGTGTCTGAAATGGGGATACCTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
49853 TTCAAATGGTCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-A
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
49917 AAATATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA
260 AAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * **
49982 TCCTGAACCGCATAACA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
324 TCCCGAACCGCA-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
50046 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
50111 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGGTTGCGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
50176 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
518 CTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * * *
50241 GAAGTTCATTCCCATTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATTGGCAGCACAC
579 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * ** *
50306 AGAGGGGGACCCGGTCGATCGCCAGCTTGCGCATCCTGCCCCTCTGCCCGGCTGAGCGCCCGTAC
644 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTAC
* * *
50371 GCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
709 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
50436 CCCAGTCTAAGATCGGACAGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGG
774 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
50501 TACCGTATTTTTTTTCGCCGGGGCACCATCGTCGGAGAATTA-TCGGAGAACCTGACCGGC
839 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TAGTCGGAGAACCTGACCGGC
* * * *
50561 GGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGTGCGCACTTGATGTACGATGGGTGCTG
1 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
50626 GTACTTGGCCCTTATATTGGCCCTCTATCCATCATCAAACCTTGAGAACTCACA-CCCCTTAAAG
65 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
50690 AGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
50755 TTCAAATGGTCACAAACTCTTGTACAGTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACA
195 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
50820 AAAATACAAGGATCACGTCCACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAA-TTTAAAAAAT
260 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
50884 CCTGAACCGCATAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
50949 CAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGA
390 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
51014 AATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGGTTGTGCATCCCGTCTCT
455 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
51079 CTGGCCGGCGTAGCGCCCGCCCGACCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
520 CTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* ** * * * *
51144 ACTTCATTCCCAGTCTAAGATTGGATCGGGCCGAGAGTTGTGGCAGCAGGATCGGCAGCACGCAG
581 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* ** * * *
51209 AGGGGGACCCGACCGATCCCCGGCTTGCGCATGTCACCCCTCTGGCTGGCTAAGCGCCCGTATGC
646 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGC
* * * *
51274 TCATTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCT
711 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
51339 CAGTCTAAGATCGGACCGAACTGAGGGTTGCAGTAACACATGCTGGGCTCGGGCATGTGCTGGTG
776 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** ** * * *
51404 CCGCATTTCTCTTCCCCGGGGCACCATCGTTGGAGCATCGTCGGAGAACTTGACCGGT
841 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGGC
* * * * ***
51462 AGCATTAGGCTTTCGGCGATCGGGGGGCC-GGGGG-GTGCGCACATGATGTGCGATGGGTGCCAA
1 GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
51525 TACTTGGCCCCTATATTTGCCCCCTATCCATCATGAAACCTCGAGAACTCACA-CCCCTTAAAGA
66 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
51589 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
131 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
51654 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAGGCCAACAA
196 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
51719 AATTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
261 AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
51784 CCGAACCACAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTC
326 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
51849 ACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAA
391 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
51914 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTT
456 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* **** * *
51979 TGGCCGACGTAGTGCCCGCCCGCCCGCTTATTCGTTTCATAGGTTGGCTCAGGCATACGGAGTTC
521 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * **
52044 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCAGCCA-CACATAGAGGG
586 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGAGGG
* * * * * * * * *
52108 GGACCCGGTCGATCCCCGACATGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCAGCACGATCGT
650 GGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGT
* * *
52173 TTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
715 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * *
52238 CTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGACCATGTGTTGGTGCTGC
780 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* *
52303 ATTTTTCTTCATCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGATCGGC
845 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGGC
*
52357 GGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** *
52422 GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTGCTCACACCCCCGTAAA
64 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
52487 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGAACACTTT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** *
52552 TTTCAAATGGTCACAAAATCTCATACACTTCGAGTCTTTT-GCTGAAATTTTTTGTGCATGCCAA
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
52616 -AAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
258 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
52680 ATCTCGAACCGCAAAAAGTTTTGAAAACCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
52745 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
52810 GAAATACGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
52875 CTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAG
518 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * ** ** *
52940 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGATCGATAGCATGCAGAG
583 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * *
53005 GGGGACTCGGTCGATCCCTGGCTTGCGCAT-CCATCCCCTCTGGCCGGTTGAGCGCCCGCACGTT
648 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCGGCTGAGCGCCCGTACGCT
* * * * *
53069 CATTTTC-TGGGTTGACTTAGGCATACCGAGTTCATTCCTAGTCTAAGCATACGAATTTCATTCC
712 C-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
53133 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
776 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
53198 CCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCA-CCGGAGAACCTGACTGAC
841 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT-AGTCGGAGAACCTGACCGGC
* * * * *
53256 GGCATTGGGTTTTCGACGATCTGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTCCGGCGATC-G-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** * * * *
53321 GGTACCTGGCCCTTATATTATCCCCCTATGCCTCATCAAACTTGGAGAACTCATACCCCCTTAAA
64 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
53386 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTAT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
53451 TTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAAC
194 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
53515 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAACTCCTTCCAAAAAAATTTTAAAAAA
259 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** * * * *
53580 TCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGTGTTGTTTTGCCATGAAACT
324 TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
53645 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
53710 AAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGACTTGCGCATCCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
53775 TCTGGCCGACGTAAT----GCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGT
519 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* ** * * *
53836 TCATTCCAAGTCTAATTTCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGG
584 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * ** * *
53901 GGCACCCAACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTGATTGAGTGCCCGTACACTCG
649 GGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
* *
53966 TTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
714 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
54031 TCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTC
779 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-C
* * *
54096 -CATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATCGTCGGAGAACTTGACCGAC
843 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGGC
* * * *
54150 GGCATTGGGGTTCCGGTGATCAGGGGGCCGGGGGAGGTGTGCGCACACGATGTGTGATGGGTGCT
1 GGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCT
54215 GGTACTTG
64 GGTACTTG
54223 ACCCGACTGA
Statistics
Matches: 4814, Mismatches: 529, Indels: 179
0.87 0.10 0.03
Matches are distributed among these distances:
862 4 0.00
863 557 0.12
864 84 0.02
865 36 0.01
867 9 0.00
868 1 0.00
870 1 0.00
873 1 0.00
874 2 0.00
876 4 0.00
877 79 0.02
879 1 0.00
881 4 0.00
882 1 0.00
884 2 0.00
885 4 0.00
887 1 0.00
889 75 0.02
890 4 0.00
892 7 0.00
893 5 0.00
894 84 0.02
895 590 0.12
896 12 0.00
897 10 0.00
898 283 0.06
899 1309 0.27
900 144 0.03
901 568 0.12
902 257 0.05
903 672 0.14
904 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGGC
Found at i:54021 original size:26 final size:26
Alignment explanation
Indices: 53985--54036 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
53975 TTGACTTAGC
53985 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
54011 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
54037 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:54333 original size:26 final size:26
Alignment explanation
Indices: 54303--54355 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
54293 GTTGACTTTG
54303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
54329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
54355 G
1 G
54356 ATGGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:57090 original size:17 final size:16
Alignment explanation
Indices: 57061--57110 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
57051 TAGTTTTTAT
57061 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
57079 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
57093 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
57108 TAA
1 TAA
57111 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:57409 original size:18 final size:18
Alignment explanation
Indices: 57370--57411 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
57360 TCACATAACA
* *
57370 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
57388 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
57405 AATAATT
1 AATAATT
57412 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:60083 original size:939 final size:935
Alignment explanation
Indices: 57079--60658 Score: 6197
Period size: 935 Copynumber: 3.9 Consensus size: 935
57069 AATTAATTGA
57079 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
* *
57144 TATTTAATTATTATTATATACATTTTATTAG--------A--T-AATTAAATTTATTTATGATAA
66 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
* * *
57198 ATTAGATAATAGTAGATATAAGATCTCAAGACAAATTTAAAGCTTTTATTCATAATATAATTATT
131 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
** * *
57263 AATT--T--TTATGATTT--ATATTACTTTTT--AA-TTAT-TT-A---TTAATTAGGAATAAAT
196 AATTGGTAAACAT-ATTTAAATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAAT
* * *
57314 TTATTGGATTGCTTATAAATTTATATAATTACGTAATATAATTATATCACATAACAAATAGTTTA
260 TTATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTA
*
57379 TTTTTTATTATAATTTATTTTTAATTAATAATTAATAATTGTGTTAATTGTAGCTATTTTGTTAA
325 TTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAA
57444 ATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTA
390 ATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTA
* *
57509 TGTCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTTAA
455 TATCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTTAA
* *
57574 TTTTAAATAACAAGATAGTAATATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTT
520 TTTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTT
*
57639 ATTCTCAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAATAAA
585 ATTCTCAACATCCTTAGAGCACCTAAAAAT-TATCTAAAAGCAAATAAGAATGAAACACAATAAA
*
57704 AAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAGAAACAAAGTC
649 AAATTAAAATCGCGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAGAAACAAAGTC
57769 TGATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATA
714 TGATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATA
*
57834 ATTGTTCAAATAGTATTAACTATTTGAACTGGTTATAATTATTTAAACCGGTTTGGTAAATCAAT
779 ATTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGGTTTGGTAAATCAAT
*
57899 TTATTTTTTAAATCTTTTACTAATTCTTAAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATA
844 TTATTTTTTAAATCTTTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATA
57964 AGCTTATAAGTTGAAAATCAATTGTTT
909 AGCTTATAAGTTGAAAATCAATTGTTT
*
57991 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAAATTATAACTAAGAATTTAATATTCT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
58056 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
66 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
58121 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
131 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
*
58186 AATTGGTAAACATATTTAAATATTAATTTTTAAGATTTATATTAATTTTTAATTATGAATAAATT
196 AATTGGTAAACATATTTAAATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAATT
58251 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTTA
261 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAG-TTTA
*
58316 TTTTTTATTATAATTTATTTTTAATTAATACTTAATAACTGTGTTAATTGTAGCTATTTTGTT-A
325 TTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAA
58380 A-ATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTA
390 ATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTA
58444 TATCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTTAA
455 TATCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTTAA
58509 TTTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTT
520 TTTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTT
* * *
58574 ATTCTCAACTTCCTTAGAGCACCTAAAAATTATTTAAAAGCAAATAAGAATGAAACACAAT-GAA
585 ATTCTCAACATCCTTAGAGCACCTAAAAATTATCTAAAAGCAAATAAGAATGAAACACAATAAAA
* * * *
58638 AATTAAAATCGCGGAATAATTGTGCGAATGGTTTTTAAGCCTAAAATTGTTCAGAAACAAAATCT
650 AATTAAAATCGCGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAGAAACAAAGTCT
* **
58703 GACGTTTTAAATCATAATTATTA--TATATACCTTTTTTTATTTATAATAATTTGAAATAGATAA
715 GATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATAA
* * *
58766 TTGTTCAAATAGTAATAACTATTTGAAGTGGTCATAATTATTTAAACCGGTTTGGTAAATAAATT
780 TTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGGTTTGGTAAATCAATT
*
58831 TATTTTTTAAATCTCTTACTAATTCTTGAAGTATT-AAAAATTAGTATTATTTTGTTTCAAATAA
845 TATTTTTTAAATCTTTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAA
*
58895 GTTTATAAGTTGAAAATCAA-TGTTT
910 GCTTATAAGTTGAAAATCAATTGTTT
*
58920 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATACT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
* * *
58985 TGTTTAATTATTG-TATA-ATATTTTA-TAGATAATTAAATTTCAATTAAATTTATTTATGATAA
66 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
*
59047 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCATAATATAATTATT
131 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
*
59112 AATTGGTAAACATATTTATATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAATT
196 AATTGGTAAACATATTTAAATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAATT
59177 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTAT
261 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTAT
*
59242 TTTTTATTATAATTTATTTTTAATTAATAGTTAATAACTGTGTTAATTGTAGCTATTTTGTTAAA
326 TTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTT-AA
*
59307 TATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATGGTT
390 -ATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTT
* * *
59372 ATGTTAATGCATTCAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTT
454 ATATCAATGCATT-AAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTT
* * * *
59437 AATTTTAAATAACAAGATAGTAATATTTGAAATTTCAAAAAATTCCATGATTAGATAATTATTAT
518 AATTTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTAT
*
59502 TTATTCTCAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAATA
583 TTATTCTCAACATCCTTAGAGCACCTAAAAAT-TATCTAAAAGCAAATAAGAATGAAACACAATA
* *
59567 AAAAATTAAAATCGTGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAAAAACAAAG
647 AAAAATTAAAATCGCGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAGAAACAAAG
59632 TCTGATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGA
712 TCTGATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGA
* *
59697 TAATTGTTCAAATAGTAATAACTATTTGAATTGGTTATAATTATTTAAACCGGTTTGGAAAATCA
777 TAATTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGGTTTGGTAAATCA
* *
59762 ATTTATTTTTAAAATCTTTTACTAATTCTTGAATTATTAAAAAATTAGTATTATTTTGTTTCAAA
842 ATTTATTTTTTAAATCTTTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAA
59827 TAAGCTTATAAGTTGAAAATCAATTGTTT
907 TAAGCTTATAAGTTGAAAATCAATTGTTT
59856 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
1 TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
59921 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
66 TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
59986 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
131 ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
*
60051 AATTGGTAAACATATTTAAATATTAATTTTTAAGATTTATATTAATTTTTAATTATGAATAAATT
196 AATTGGTAAACATATTTAAATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAATT
60116 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTAT
261 TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTAT
60181 TTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAA
326 TTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAA
60246 TATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTAT
391 TATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTAT
* * *
60311 ATCAATGCATTAAATATTCATAAGTATATGAATATTATTATAATTTAAGTTTCAATTTCTTTAAT
456 ATCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTTAAT
60376 TTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTA
521 TTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTA
* * *
60441 TTCTCAATATCCTTAGAGCACCTAAAAATTATTTAAAAGCAAATAAGAATGAAACACAATGAAAA
586 TTCTCAACATCCTTAGAGCACCTAAAAATTATCTAAAAGCAAATAAGAATGAAACACAATAAAAA
* *
60506 ATTAAAATCGCGGAATAATTGTGCGAATGGTTTTTAAGCCCAGAATTGTTT-AGAAACAAAGTCT
651 ATTAAAATCGCGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATT-TTTCAGAAACAAAGTCT
60570 GATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATAA
715 GATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATAA
*
60635 TTGTTCGAATAGTAATAACTATTT
780 TTGTTCAAATAGTAATAACTATTT
60659 AGTTTTTAAA
Statistics
Matches: 2522, Mismatches: 105, Indels: 59
0.94 0.04 0.02
Matches are distributed among these distances:
912 93 0.04
920 1 0.00
922 1 0.00
923 87 0.03
925 67 0.03
926 226 0.09
927 11 0.00
928 16 0.01
929 152 0.06
930 191 0.08
931 165 0.07
932 85 0.03
933 85 0.03
934 160 0.06
935 443 0.18
936 298 0.12
937 143 0.06
938 10 0.00
939 288 0.11
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.44
Consensus pattern (935 bp):
TAATTAAAATTATTTAATTAAATTAATTATAACTGTATAGATTATAACTAAGAATTTAATATTCT
TATTTAATTATTGTTATATATATTTTATTAGATAATTCAATTTGAATTAAATTTATTTATGATAA
ATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTATTCAGAATATAATTATT
AATTGGTAAACATATTTAAATATTAATTTTTAAAATTTATATTAATTTTTAATTATGAATAAATT
TATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATCACATAACAAATAGTTTAT
TTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAA
TATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTATAACAATAAATATAGTTAT
ATCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTTTCAATTTCTTTAAT
TTTAAATAACAAGATACTAACATTTGAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTA
TTCTCAACATCCTTAGAGCACCTAAAAATTATCTAAAAGCAAATAAGAATGAAACACAATAAAAA
ATTAAAATCGCGCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTTTTCAGAAACAAAGTCTG
ATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTTATTTATAATAATTTGAAATAGATAAT
TGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGGTTTGGTAAATCAATTT
ATTTTTTAAATCTTTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAG
CTTATAAGTTGAAAATCAATTGTTT
Found at i:60210 original size:18 final size:18
Alignment explanation
Indices: 60171--60212 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
60161 TCACATAACA
* *
60171 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
60189 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
60206 AATAATT
1 AATAATT
60213 AATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:61234 original size:17 final size:16
Alignment explanation
Indices: 61205--61254 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
61195 TAGTTTTTAT
61205 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
61223 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
61237 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
61252 TAA
1 TAA
61255 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:62914 original size:17 final size:16
Alignment explanation
Indices: 62885--62934 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
62875 TAGTTTTTAT
62885 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
62903 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
62917 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
62932 TAA
1 TAA
62935 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:63232 original size:18 final size:18
Alignment explanation
Indices: 63193--63234 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
63183 TCACATAACA
* *
63193 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
63211 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
63228 AATAATT
1 AATAATT
63235 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:64154 original size:17 final size:18
Alignment explanation
Indices: 64132--64168 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
64122 TAACAAACAG
*
64132 TTTATTTTTTATT-ATAA
1 TTTATTTTTAATTAATAA
64149 TTTATTTTTAATTAATAA
1 TTTATTTTTAATTAATAA
64167 TT
1 TT
64169 AATAACTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTTTAATTAATAA
Found at i:64971 original size:936 final size:921
Alignment explanation
Indices: 63005--64847 Score: 2468
Period size: 936 Copynumber: 2.0 Consensus size: 921
62995 TTAGATAATT
* * *
63005 AAATTTCTTTATGATAAATTAGATAATAGTAGATATAAGATCTCAGGACAAATTTAAAGCTTTTA
1 AAATTTATTTATGATAAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAA-CTTTAA
** * * * * **
63070 TTCATAATATAATTATTAATT--T-----TA-TG----ATTTA-TATTCATTTTTAATTATTTAT
65 TAAAGAATATAATTATTAATTGATAAACATACTGAAAAATTAATTTTTAAGATTTAATTATTTAT
* *
63122 TAATTATGAATAAATTTATTGGATTGCTTATAAATTTATATAATTACGTAATATAATTATATCAC
130 TAATTATGAATAAATTTATTGGATAGCGTATAAATTTATATAATTACGTAATATAATTATATCAC
* *
63187 ATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAATTAATAATTAATAATTGTGTTAATTG
195 ATAACAAACAGTTTATTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTG
63252 TAGCTATTTTGTTAAAAATATATATTATTTGATTTATTAAGTAGCTAATTAAAATTATTTATAAC
260 TAGCTATTTTGTTAAAAATATATATTATTTGATTTATTAAGTAGCTAATTAAAATTATTTATAAC
*
63317 AATAAATATAGTTATGTCAATGCATTAAATATTCATTACTATTTGAATATTATTCTAATTTAAGT
325 AATAAATATAGTTATGTCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGT
* *
63382 TTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTTGAAATTTTCAAAAATTCCATCATTT
390 TTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTTGAAATTTCCAAAAATTCCATCATTG
63447 GATAATTATTATTTATTCTCAATATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGCA
455 GATAATTATTATTTATTCTCAATATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGCA
* *
63512 TGAAACACAATGAAAAATTAAAATCGCGCAATAATTGTGCGAATGATTTTTAAGCCCAGAATTGT
520 TGAAACACAATGAAAAATTAAAATCGCGCAATAATTGGGCGAATGATTTTTAAGCCCAAAATTGT
* * * *
63577 TTAGAAACAAAGTCTGATGTTTTAAATCATAATTATTATCTATATGGCTTTTTTATTTATAATAA
585 TCAGAAACAAAATCTGACGTTTTAAATCATAATTATTATCTATATGGC--TCTTATTTAT-ATAA
*
63642 TTTGAAATAGATAATTGTTCAAATAGTAGTAACTATTTGAACTGGTTATAATTATTTAAACCGAT
647 TTT---ATA-ATAATTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGAT
* * * *
63707 TTGTTAAATTAATTTATTTTTTAAATCTTTTACTAATTCTTGAAGTATTAAAAAATTAGTATTAT
708 TTGGTAAATAAATTTATTTTCTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTAT
** ** ** *
63772 TTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTGTTTTAATTAAAATTATTTAATTAAATTA
773 TTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTGTTTTAAAAAAAAAAAGGTAATAAAATTA
* * * * *** ** ** * * *
63837 ATTATAACTATATAGATTATAACTAAGAATTTAATATTCTTATTTAATTATTGTTATATATATTT
838 ATTATAACTATATAGATTAGAAC-AACAATTT-ATATTATCACAAAAAAAAGGTAATATAGATTG
* * * * **
63902 TATTAGATAATTCAATTTGAATT
901 AAATAGATAATT--AGTTCAAGG
*
63925 AAATTTATTTATGATAAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAAGCTTTTA
1 AAATTTATTTATGATAAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAA-CTTTAA
** * * * *
63990 TTCAGAATATAATTATTAATTGGTAAACATATTTAAATATTAATTTTTAAGATTTATATTAATTT
65 TAAAGAATATAATTATTAATTGATAAACATACTGAAAAATTAATTTTTAAGATTTA-ATT-ATTT
*
64055 -TTAATTATGAATAAATTTATTGGATAGCGTATAAATTTATATAATTATGTAATATAATTATATC
128 ATTAATTATGAATAAATTTATTGGATAGCGTATAAATTTATATAATTACGTAATATAATTATATC
64119 ACATAACAAACAGTTTATTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAAT
193 ACATAACAAACAGTTTATTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAAT
*
64184 TGTAGCTATTTTGTTAAATATATATATTATTTGATTTATTAAGTAGCTAATTAAAAATTATTTAT
258 TGTAGCTATTTTGTTAAAAATATATATTATTTGATTTATTAAGTAGCTAATT-AAAATTATTTAT
* *
64249 AACAATAAATATGGTTATGTTAATGCATTCAAATATTCATAACTATTTGAATATTATTCTAATTT
322 AACAATAAATATAGTTATGTCAATGCATT-AAATATTCATAACTATTTGAATATTATTCTAATTT
* *
64314 AAGTTTCAATTTGTTTAATTTTAAATAATATGATACTAATATTTGAAATTTCCAAAAATTCCATC
386 AAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTTGAAATTTCCAAAAATTCCATC
*
64379 ATTGGATAATTATTATTTATTCTCAATATTCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATA
451 ATTGGATAATTATTATTTATTCTCAATATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATA
* * * *
64444 AGCATGAAATACAGTGAAAAATTAAAATCGTGCAATAATTGGGCGAATGGTTTTTAAGCCCAAAA
516 AGCATGAAACACAATGAAAAATTAAAATCGCGCAATAATTGGGCGAATGATTTTTAAGCCCAAAA
64509 TTGTTCAGAAACAAAATCTGACGTTTTAAATCATAATTATTATCTATAT-GC-CTT-TTT-T-T-
581 TTGTTCAGAAACAAAATCTGACGTTTTAAATCATAATTATTATCTATATGGCTCTTATTTATATA
** *
64568 A-TT-T-ATAATTGTTCAAATAGTAATAACTATTTGAGGTGGTTATAATTATTTAAACCGGTTTG
646 ATTTATAATAATTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGATTTG
64630 GTAAATAAATTTATTTTCTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTT
711 GTAAATAAATTTATTTTCTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTT
*
64695 GTTTCAAATAAGTTTATAAGTTGAAAATCAATTGTTTTATGACAAAAAGAAAAGGTAATAACAAT
776 GTTTCAAATAAGCTTATAAGTTGAAAATCAATTGTTTTA--A-AAAAA-AAAAGGTAATAA-AA-
* * *
64760 TTTATTTAATAAGCT-TGTATG-TTGGAA-AACAATTGT-T-TTATCACAAAACAAAAGGTAATA
835 -TTAATT-ATAA-CTATATA-GATTAGAACAACAATT-TATATTATCACAAAA-AAAAGGTAATA
64820 -AGGATTGGAAATAGATAATT-GTTCAAGG
894 TA-GATT-GAAATAGATAATTAGTTCAAGG
64848 CCATCATTAT
Statistics
Matches: 820, Mismatches: 72, Indels: 59
0.86 0.08 0.06
Matches are distributed among these distances:
920 236 0.29
922 3 0.00
923 7 0.01
924 14 0.02
925 12 0.01
926 18 0.02
927 9 0.01
928 13 0.02
929 3 0.00
930 1 0.00
931 3 0.00
932 6 0.01
933 8 0.01
934 178 0.22
935 45 0.05
936 264 0.32
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (921 bp):
AAATTTATTTATGATAAATTAGATAATAGTAGATATAAGATCTCAGGACAAAATTAAACTTTAAT
AAAGAATATAATTATTAATTGATAAACATACTGAAAAATTAATTTTTAAGATTTAATTATTTATT
AATTATGAATAAATTTATTGGATAGCGTATAAATTTATATAATTACGTAATATAATTATATCACA
TAACAAACAGTTTATTTTTTATTATAATTTATTTTTAATTAATAATTAATAACTGTGTTAATTGT
AGCTATTTTGTTAAAAATATATATTATTTGATTTATTAAGTAGCTAATTAAAATTATTTATAACA
ATAAATATAGTTATGTCAATGCATTAAATATTCATAACTATTTGAATATTATTCTAATTTAAGTT
TCAATTTGTTTAATTTTAAATAACAAGATACTAATATTTGAAATTTCCAAAAATTCCATCATTGG
ATAATTATTATTTATTCTCAATATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGCAT
GAAACACAATGAAAAATTAAAATCGCGCAATAATTGGGCGAATGATTTTTAAGCCCAAAATTGTT
CAGAAACAAAATCTGACGTTTTAAATCATAATTATTATCTATATGGCTCTTATTTATATAATTTA
TAATAATTGTTCAAATAGTAATAACTATTTGAACTGGTTATAATTATTTAAACCGATTTGGTAAA
TAAATTTATTTTCTAAATCTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTC
AAATAAGCTTATAAGTTGAAAATCAATTGTTTTAAAAAAAAAAAGGTAATAAAATTAATTATAAC
TATATAGATTAGAACAACAATTTATATTATCACAAAAAAAAGGTAATATAGATTGAAATAGATAA
TTAGTTCAAGG
Found at i:65968 original size:16 final size:17
Alignment explanation
Indices: 65936--65968 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65926 AATTAGTTCA
65936 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
65954 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
65969 GAAATCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:66899 original size:14 final size:14
Alignment explanation
Indices: 66859--66900 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
66849 TTATTAATTA
66859 TAAATTAATTGATAAT
1 TAAATTAATT--TAAT
66875 TAAAATT-ATTTAAT
1 T-AAATTAATTTAAT
66889 TAAATTAATTTA
1 TAAATTAATTTA
66901 TAACTGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.21
14 10 0.42
16 4 0.17
17 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TAAATTAATTTAAT
Found at i:67202 original size:18 final size:18
Alignment explanation
Indices: 67163--67204 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
67153 TCACATAACA
* *
67163 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
67181 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
67198 AATAATT
1 AATAATT
67205 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:67800 original size:13 final size:13
Alignment explanation
Indices: 67782--67812 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
67772 AATCAATTGT
67782 TTTAATTAAATTA
1 TTTAATTAAATTA
67795 TTTAATTAAATTA
1 TTTAATTAAATTA
*
67808 ATTAA
1 TTTAA
67813 ATGTATAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTAATTAAATTA
Found at i:68108 original size:18 final size:18
Alignment explanation
Indices: 68069--68110 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
68059 TCACATAACA
* *
68069 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
68087 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
68104 AATAATT
1 AATAATT
68111 GATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:68342 original size:909 final size:904
Alignment explanation
Indices: 66871--68692 Score: 2885
Period size: 909 Copynumber: 2.0 Consensus size: 904
66861 AATTAATTGA
66871 TAATTAAAATTATTTAATTAAATTAATTTATAACTGTATAGATTATAACTAAGAATTTAATATTC
1 TAATTAAAATTATTTAATTAAATTAATTTATAACTGTATAGATTATAACTAAGAATTTAATATTC
66936 TTATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAAT
66 TTATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAAT
* * * * **
67001 AGTAGATATAAGATCTCAGGACAAATTTAAAGCTTTTATTCATAATATAATTATTAATTTTTATG
131 AGTAAATATAAGATCTCAAGACAAAATTAAAGCTTTTATTCAGAATATAATTATTAATTTACATG
* * * * *
67066 ATTTATATTAATTTTTAATTATTTATTAATTATGAATAAATTTATTGGATTGCTTATCAATTTAT
196 ATTTAAATTAATTTATAATTAATTATTAATTATGAAAAAATTTATTGGA----TTAGCAA-TTAT
67131 ATAATTACGTAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAA
256 ATAATTA--TAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAA
*
67196 TTAATAATTAATAATTGTGTTAATTGTAGCTATTTTGTTAAATATATATTATTTGATTTATTAAG
319 TTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTTAAATATATATTATTTGATTTATTAAG
*
67261 TAGCTAATTAAAAATTATTTATAACAATAAATATAGTTATGTCAATGCATTAAATATTCATAACT
384 TAGCTAATTAAAAATTATTTACAACAATAAATATAGTTATGTCAATGCATTAAATATTCATAACT
*
67326 ATTTGAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTT
449 ATTTAAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTT
*
67391 GAAATTTCAAAAAATTCCATCATTGGATAATTATTATTTATTCTCAACATCCTTAGAGCACCTAA
514 GAAATTTCAAAAAATTCCATAATTGGATAATTATTATTTATTCTCAACATCCTTAGAGCACCTAA
67456 AAATGTATCTAAAAGCAAATAAGTATG-AACACAATGAAAAATTAAAATCGTGCAATAATTGTGC
579 AAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGC
* * * *
67520 GAATGGTTTTTAAAGCCCAGAATTGTTTAGAAACAAAGTCTGATGTTTTAAATCAT-ATTATTAT
644 GAATGGTTTTT-AAGCCCAAAATTGTTCAGAAACAAAATCTGACGTTTTAAATCATAATTATTAT
*
67584 CTATATGGCTTTTTCTTATTTATAATAATTTGAAATAGATAATTTGTTTCAAATAGTAATAACTA
708 CTATATGCCTTTTT-TTATTTATAATAATTTGAAATAGATAA-TTG-TTCAAATAGTAATAACTA
* *
67649 TTTACAAG-GGTCATAA-TATTTAAACCGGTTTGGTAAATCAATTTATTTTTTAAATCTTTTACT
770 TTT-CAAGTGGTCATAATTATTTAAACCGGTTTGGTAAATAAATTTATTTTTTAAATCTCTTACT
67712 AATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAAATAAGCTTATAAGTTGAAAATCA
834 AATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTC-AAATAAGCTTATAAGTTGAAAATCA
67777 ATTGTTT
898 ATTGTTT
67784 TAATT-AAATTATTTAATTAAATTAA-TTA-AA-TGTATAGATTATAACTAAGAATTTAATATTC
1 TAATTAAAATTATTTAATTAAATTAATTTATAACTGTATAGATTATAACTAAGAATTTAATATTC
*
67845 TT-TTTAATTATTGTTAT-TATATTTTATTAGATAATTCAATTTGAATTAATTTGATTTATGATA
66 TTATTTAATTATTATTATATATATTTTATTAG---A-T-AA-TT--A--AATTT-ATTTATGATA
67908 AATTAGATTAAT-GTAAATATAAGATCTCAAGACAAAATTAAAGCTTTTATTCAGAATATAATTA
120 AATTAGA-TAATAGTAAATATAAGATCTCAAGACAAAATTAAAGCTTTTATTCAGAATATAATTA
67972 TTAATTGGTAAACAT-ATTTAAATATAATTTAT-ATTAATT-TTAATTAT-AAAAAATTTATTGG
184 TTAATT--T--ACATGATTTAAAT-TAATTTATAATTAATTATTAATTATGAAAAAATTTATTGG
68033 A-TAGC-A-TATA-AATT-T-ATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAAT
244 ATTAGCAATTATATAATTATAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAAT
*
68092 TTATTTTTAATTAATAATTGATAACTGTGTTAATTGTAGCTATTTTGTTAAATATATATATTATT
309 TTATTTTTAATTAATAATTAATAACTGTGTTAATTGTAGCTATTTTGTT-AA-ATATATATTATT
* *
68157 TGATTTATTAAGTAGCTAATTAAAAATTATTTACAACAATAAATATGGTTATGTTAATGCATTCA
372 TGATTTATTAAGTAGCTAATTAAAAATTATTTACAACAATAAATATAGTTATGTCAATGCATT-A
* *
68222 AATATTCGTAACTATTTAAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAATAA
436 AATATTCATAACTATTTAAATATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAA
* **
68287 GATACTAATATTTGAAATTTCTAAAAATTCCATAATTGGATAATTATTATTTATTCTCAACATTT
501 GATACTAATATTTGAAATTTCAAAAAATTCCATAATTGGATAATTATTATTTATTCTCAACATCC
* *
68352 TTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAATACAATGAAAAATTAAAATCGT
566 TTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGT
68417 GCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTGTTCAGAAACAAAATCTGACGTTTTAAAT
631 GCAATAATTGTGCGAATGGTTTTTAAGCCCAAAATTGTTCAGAAACAAAATCTGACGTTTTAAAT
68482 CATAATTATTATCTATATGCCTTTTTTTATTTATAATAATTTGAAATAGATAATTGTTCAAATAG
696 CATAATTATTATCTATATGCCTTTTTTTATTTATAATAATTTGAAATAGATAATTGTTCAAATAG
*
68547 TAATAACTATTTGAAGTGGTCATAATTATTTAAACCGGTTTGGTAAATAAATTTATTTTTTAAAT
761 TAATAACTATTTCAAGTGGTCATAATTATTTAAACCGGTTTGGTAAATAAATTTATTTTTTAAAT
*
68612 CTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAGTTTATAAGTTG
826 CTCTTACTAATTCTTGAAGTATTAAAAAATTAGTATTATTTTGTTTCAAATAAGCTTATAAGTTG
68677 AAAATCAATTGTTT
891 AAAATCAATTGTTT
68691 TA
1 TA
68693 TGACAAAAAA
Statistics
Matches: 850, Mismatches: 35, Indels: 54
0.91 0.04 0.06
Matches are distributed among these distances:
906 94 0.11
907 78 0.09
908 173 0.20
909 263 0.31
910 75 0.09
911 8 0.01
912 22 0.03
913 8 0.01
914 3 0.00
915 1 0.00
917 5 0.01
918 71 0.08
919 18 0.02
920 9 0.01
921 13 0.02
922 9 0.01
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (904 bp):
TAATTAAAATTATTTAATTAAATTAATTTATAACTGTATAGATTATAACTAAGAATTTAATATTC
TTATTTAATTATTATTATATATATTTTATTAGATAATTAAATTTATTTATGATAAATTAGATAAT
AGTAAATATAAGATCTCAAGACAAAATTAAAGCTTTTATTCAGAATATAATTATTAATTTACATG
ATTTAAATTAATTTATAATTAATTATTAATTATGAAAAAATTTATTGGATTAGCAATTATATAAT
TATAATATAATTATATCACATAACAAATAGTTTATTTTTTATTATAATTTATTTTTAATTAATAA
TTAATAACTGTGTTAATTGTAGCTATTTTGTTAAATATATATTATTTGATTTATTAAGTAGCTAA
TTAAAAATTATTTACAACAATAAATATAGTTATGTCAATGCATTAAATATTCATAACTATTTAAA
TATTATTCTAATTTAAGTTTCAATTTGTTTAATTTTAAATAACAAGATACTAATATTTGAAATTT
CAAAAAATTCCATAATTGGATAATTATTATTTATTCTCAACATCCTTAGAGCACCTAAAAATGTA
TCTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAATAATTGTGCGAATGGT
TTTTAAGCCCAAAATTGTTCAGAAACAAAATCTGACGTTTTAAATCATAATTATTATCTATATGC
CTTTTTTTATTTATAATAATTTGAAATAGATAATTGTTCAAATAGTAATAACTATTTCAAGTGGT
CATAATTATTTAAACCGGTTTGGTAAATAAATTTATTTTTTAAATCTCTTACTAATTCTTGAAGT
ATTAAAAAATTAGTATTATTTTGTTTCAAATAAGCTTATAAGTTGAAAATCAATTGTTT
Found at i:70831 original size:17 final size:16
Alignment explanation
Indices: 70802--70851 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
70792 TAGTTTTTAT
70802 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
70820 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
70834 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
70849 TAA
1 TAA
70852 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:71150 original size:18 final size:18
Alignment explanation
Indices: 71111--71152 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
71101 TCACATAACA
* *
71111 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
71129 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
71146 AATAATT
1 AATAATT
71153 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:72086 original size:18 final size:18
Alignment explanation
Indices: 72047--72088 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
72037 TCACATAACA
* *
72047 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
72065 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
72082 AATAATT
1 AATAATT
72089 AATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:75086 original size:16 final size:17
Alignment explanation
Indices: 75054--75086 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
75044 AATTAGTTCA
75054 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
75072 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
75087 GAAATCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:76002 original size:17 final size:16
Alignment explanation
Indices: 75973--76022 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
75963 TAGTTTTTAT
75973 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
75991 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
76005 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
76020 TAA
1 TAA
76023 CTGTATAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 3 0.10
16 3 0.10
17 5 0.17
18 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:76303 original size:18 final size:18
Alignment explanation
Indices: 76264--76305 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
76254 TCACATAACA
* *
76264 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
76282 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
76299 AATAATT
1 AATAATT
76306 AATAATTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:77235 original size:18 final size:18
Alignment explanation
Indices: 77196--77237 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
77186 TCACATAACA
* *
77196 AATAGTTTATTTTTTATT
1 AATAATTTATTTTTAATT
77214 -ATAATTTATTTTTAATT
1 AATAATTTATTTTTAATT
77231 AATAATT
1 AATAATT
77238 AATAACTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATAATTTATTTTTAATT
Found at i:78932 original size:179 final size:176
Alignment explanation
Indices: 78656--79091 Score: 525
Period size: 179 Copynumber: 2.4 Consensus size: 176
78646 ACCAATCAAG
* * * * *
78656 TTCAAATAGTTGTGACTATTTGAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGACA
1 TTCAAATAGTTATGGCTATTTGAA-TATTATCTATTTAAAATCATTATGACCTTTTG-TTTGTC-
* *
78721 AAAAAACAATTGTTTCAGTTCATAAAAGCTTA-TCCAAGATAAAATAATACTAATTTCTTAATAT
63 ATAAAACAATTGTTTCAGTTCATAAAAGCTTATTCCAA-ATAAAATAATACTAATTTATTAATAT
* * * *
78785 TTCAAAAATTAATGAGCAAGAGTTTAAAAAAATTAA-TTTGTTTATTTAACAAA
127 TTCAAAAATTAATAAG--AGA-TTT-AAAAAATGAATTTTGTTTACTGAACAAA
* *
78838 TTTAAATAGTTATGGCTATTTGAATATTATCTATTTAAAATCATTATGATCTTTTGTTTGTCATA
1 TTCAAATAGTTATGGCTATTTGAATATTATCTATTTAAAATCATTATGACCTTTTGTTTGTCATA
* * *
78903 AAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATAGTAATTTATTAATATTTCA
66 AAACAATTGTTTCAGTTCATAAAAGCTTATTCCAAATAAAATAATACTAATTTATTAATATTTCA
* ** *
78968 AAAATTAATAAGTGATTTAAAAAATGAATTTTGTTTACTGAATTAG
131 AAAATTAATAAGAGATTTAAAAAATGAATTTTGTTTACTGAACAAA
* * * * * *
79014 TTCAAATAATTATGGCTATTTCAATAATTATCTATTTGAAATCAATATTACCTTTTGTTCGTCAT
1 TTCAAATAGTTATGGCTATTTGAAT-ATTATCTATTTAAAATCATTATGACCTTTTGTTTGTCAT
* *
79079 ATAATAATTGTTT
65 AAAACAATTGTTT
79092 TTTATCATAC
Statistics
Matches: 221, Mismatches: 30, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
175 9 0.04
176 37 0.17
177 47 0.21
179 69 0.31
180 9 0.04
181 29 0.13
182 21 0.10
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (176 bp):
TTCAAATAGTTATGGCTATTTGAATATTATCTATTTAAAATCATTATGACCTTTTGTTTGTCATA
AAACAATTGTTTCAGTTCATAAAAGCTTATTCCAAATAAAATAATACTAATTTATTAATATTTCA
AAAATTAATAAGAGATTTAAAAAATGAATTTTGTTTACTGAACAAA
Found at i:79050 original size:16 final size:17
Alignment explanation
Indices: 79018--79050 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79008 AATTAGTTCA
79018 AATAATTATGGCTATTTC
1 AATAATTAT-GCTATTTC
79036 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
79051 GAAATCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTC
Found at i:79107 original size:177 final size:177
Alignment explanation
Indices: 78629--79144 Score: 515
Period size: 179 Copynumber: 2.9 Consensus size: 177
78619 AAAGGATATG
* * * * * * * * * *
78629 AAAAAATAAATCTGTTTAC-CAATCAAGTTCAAATAGTTGTGACTATTTGAACAATTATTTATTT
1 AAAAAATGAATTTGTTTACTGAA-CAAATTCAAATAATTATGGCTATTTCAA-TATTATCTATTT
* * * * * *
78693 AAAATCATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAA
64 AAAATCAATATGACCTTTTG-TTCGTC-ATAAAACAATTGTTTCAGTTCATACAAGCTTATCGAA
* *
78758 GATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATGAGCAAGAGTTTA
127 -ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-AAGAGTTTA
* * * * * *
78811 AAAAAATTAATTTGTTTATTTAACAAATTTAAATAGTTATGGCTATTTGAATATTATCTATTTAA
1 AAAAAATGAATTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAATATTATCTATTTAA
* * *
78876 AATCATTATGATCTTTTGTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATA
66 AATCAATATGACCTTTTGTTCGTCATAAAACAATTGTTTCAGTTCATACAAGCTTA-TCGAAATA
* *
78941 AAATAATAGTAATTTATTAATATTTCAAAAATTAATAAG-TGA-TTT-
130 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAGAGTTTA
** *
78986 AAAAAATGAATTTTGTTTACTGAATTAGTTCAAATAATTATGGCTATTTCAATAATTATCTATTT
1 AAAAAATGAA-TTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAAT-ATTATCTATTT
* * * * ** *
79051 GAAATCAATATTACCTTTTGTTCGTCATATAATAATTGTTT-TTTATCATACAAGCTTCT-G-AA
64 AAAATCAATATGACCTTTTGTTCGTCATAAAACAATTGTTTCAGT-TCATACAAGCTTATCGAAA
* **
79113 TAAAATAACACTAATTTATTAACCTTTCAAAA
128 TAAAATAATACTAATTTATTAATATTTCAAAA
79145 GTAGTAAGTA
Statistics
Matches: 287, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
174 30 0.10
175 10 0.03
176 39 0.14
177 59 0.21
179 69 0.24
180 9 0.03
181 29 0.10
182 40 0.14
183 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (177 bp):
AAAAAATGAATTTGTTTACTGAACAAATTCAAATAATTATGGCTATTTCAATATTATCTATTTAA
AATCAATATGACCTTTTGTTCGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATCGAAATAA
AATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAGAGTTTA
Found at i:79165 original size:177 final size:176
Alignment explanation
Indices: 78654--79167 Score: 482
Period size: 177 Copynumber: 2.9 Consensus size: 176
78644 TTACCAATCA
* * * * * * * * *
78654 AGTTCAAATAGTTGTGACTATTTGAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGA
1 AGTTCAAATAATTATGGCTATTTCAA-TATTATCTATTTAAAATCAATATGACCTTTTG-TTCGT
* * * * * *
78719 CAAAAAAACAATTGTTTCAGTTCATAAAAGCTTA-TCCAAGATAAAATAATACTAATTTCTTAAT
64 C-ATAAAACAATTGTTTCAGTTCATACAAGCTTACTCGAA-ATAAAATAACACTAATTTATTAAC
* * * * * **
78783 ATTTCAAAAATTAATGAGCAAGAGTTTAAAAAAATTAA-TTTGTTTATTTAACA
127 ATTTCAAAAAGTAATAAG-AA-A-TTT-AAAAAATGAATTTTGTTTACTGAATT
* * * * * * *
78836 AATTTAAATAGTTATGGCTATTTGAATATTATCTATTTAAAATCATTATGATCTTTTGTTTGTCA
1 AGTTCAAATAATTATGGCTATTTCAATATTATCTATTTAAAATCAATATGACCTTTTGTTCGTCA
* * * *
78901 TAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATAGTAATTTATTAATATTT
66 TAAAACAATTGTTTCAGTTCATACAAGCTTACTCGAAATAAAATAACACTAATTTATTAACATTT
* **
78966 CAAAAATTAATAAGTGATTTAAAAAATGAATTTTGTTTACTGAATT
131 CAAAAAGTAATAAGAAATTTAAAAAATGAATTTTGTTTACTGAATT
* *
79012 AGTTCAAATAATTATGGCTATTTCAATAATTATCTATTTGAAATCAATATTACCTTTTGTTCGTC
1 AGTTCAAATAATTATGGCTATTTCAAT-ATTATCTATTTAAAATCAATATGACCTTTTGTTCGTC
* * ** *
79077 ATATAATAATTGTTT-TTTATCATACAAGCTT-CT-G-AATAAAATAACACTAATTTATTAACCT
65 ATAAAACAATTGTTTCAGT-TCATACAAGCTTACTCGAAATAAAATAACACTAATTTATTAACAT
79138 TTCAAAAGTAGTAAGTAAGAAATTTAAAAA
129 TTCAAAA--AGTAA-TAAGAAATTTAAAAA
79168 TAAATTTATT
Statistics
Matches: 283, Mismatches: 42, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
174 30 0.11
175 10 0.04
176 43 0.15
177 71 0.25
179 69 0.24
180 9 0.03
181 29 0.10
182 22 0.08
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (176 bp):
AGTTCAAATAATTATGGCTATTTCAATATTATCTATTTAAAATCAATATGACCTTTTGTTCGTCA
TAAAACAATTGTTTCAGTTCATACAAGCTTACTCGAAATAAAATAACACTAATTTATTAACATTT
CAAAAAGTAATAAGAAATTTAAAAAATGAATTTTGTTTACTGAATT
Done.