Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168055.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36703
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Found at i:3852 original size:682 final size:682
Alignment explanation
Indices: 2356--4309 Score: 2995
Period size: 682 Copynumber: 2.9 Consensus size: 682
2346 AGTTCGATCC
** * * ** * **
2356 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CTGACGAAACAAGAGGGCGGGTACT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAAGC-CACGAAACGACCGTGCGGGCGCT
* * *
2420 -ACGTCGGCCAGAGAGACGGGATGC-CGAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
65 CA-GCCGGCCAGAGGGTCGGGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
2483 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTT
128 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
2548 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTCTTCCATTTTTCACGATTTTCAAAACTT
193 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTT
* * *
2613 TTTGCGGTTCGGGATTTTTTAAATTTTTTTGGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTG
258 TTTACGGTTCGGGATTTTTTAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
2678 ATCCTTGAATTTTTGTTCGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTT
322 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
2743 GTGACCATTTGAAAAAAATGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAAACCTGTAA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * **
2808 AATCTCAAATGCTCTTTAAGAGGGTGTAAGTTCTCCAGGTTTGATGAGGGATAAGGGGTGAATAT
452 AATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
2873 AAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACACCCCCCGACCCCTCCGATCGT
517 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG--CACACCCCCCGGCCCCCCCGATCGC
* * * * * *
2938 CGGAACCCCAATGCCGTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCATCACATGCTC
580 CGAAACCCCAATACCGTCCGACGATGGTACCCCGGCGAAGAAAAATACGGCACCAGCACATGCCC
* * *
3003 AAGCCCAGCATGTGCTATCGCAACCCTCAATCCGATCT
645 AAGCCCAGCATGTGCTACCACAACCCTCAATCCGATAT
*
3041 GATCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAAGCCACGAAACGAGCGTGCGGGCGCTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAAGCCACGAAACGACCGTGCGGGCGCTC
* *
3106 AGCCGGCCAGAGGGTCGGGATGCGCAAGTCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 AGCCGGCCAGAGGGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
3171 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT-AGTACAATGGTCCTTTAA
131 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAA
* * *
3235 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTT
195 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTT
* * * *
3300 TACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATC
260 TACGGTTCGGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
3365 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
325 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
3430 ACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAGT
390 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * *
3495 CTCAAATACTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAGTATAAG
455 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** *
3560 GGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCTCGGCCCCCCCGATCGCCGAAA
520 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAA
* * *
3625 CCCCAATACCGTCCGACGATGGTACCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
585 CCCCAATACCGTCCGACGATGGTACCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCC
* **
3690 CAGCATGTGCTGCCACAACCCTCGGTCCGATAT
650 CAGCATGTGCTACCACAACCCTCAATCCGATAT
*
3723 GATCTTAGA-TAGGGAATGAACTCCGTATGCCTAATTCATGCCACGAAACGACCGTGCGGGCGCT
1 GATCTTAGACT-GGGAATGAACTCCGTATGCCTAATTCAAGCCACGAAACGACCGTGCGGGCGCT
*
3787 CAGCCGGCCAGAGGGTCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
65 CAGCCGGCCAGAGGGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
3852 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
130 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
3917 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAA-GTTT
195 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTT
* *
3981 TACGGTTCAGGATTTTTTAATATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGAT
260 TACGGTTCGGGATTTTTTAA-ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
4046 CCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGT
324 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
4111 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
4176 TCTCAAATGCTCTTTAAGCA-AGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
454 TCTCAAATGCTCTTTAAG-AGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
4240 AGGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCCGGCCCTCCCGATCACCG
518 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCG
4305 AAACC
582 AAACC
4310 GTAATGCCGC
Statistics
Matches: 1156, Mismatches: 104, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
681 23 0.02
682 608 0.53
683 26 0.02
684 242 0.21
685 254 0.22
686 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (682 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAAGCCACGAAACGACCGTGCGGGCGCTC
AGCCGGCCAGAGGGTCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
ACGGTTCGGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAAC
CCCAATACCGTCCGACGATGGTACCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCC
AGCATGTGCTACCACAACCCTCAATCCGATAT
Found at i:7749 original size:26 final size:26
Alignment explanation
Indices: 7709--7759 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7699 AGTCTGATCT
* * *
7709 TAGACTGGGACTGAACTCCGTATGCA
1 TAGACAGGGAATGAACTCCATATGCA
7735 TAGACAGGGAATGAACTCCATATGC
1 TAGACAGGGAATGAACTCCATATGC
7760 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCATATGCA
Found at i:8647 original size:26 final size:26
Alignment explanation
Indices: 8610--8662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8600 TCCGATCGAT
*
8610 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
* *
8636 CTTAGACAGGGAATGAAGTTCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
8662 C
1 C
8663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:9338 original size:896 final size:894
Alignment explanation
Indices: 6111--9533 Score: 4645
Period size: 896 Copynumber: 3.8 Consensus size: 894
6101 AATCTGATCT
* * *
6111 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCC-ACGAAACGAGCGTGCGG--GCG
1 GATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAA-CCGACGAAACGAGCGGGCGGACGGG
* ** * * * *
6173 T----TC-A-GCCGGTTAGAGGGTCAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
64 TGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
6232 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
6297 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* *
6362 AAACTTTTTGCGGTTCAAGATTTTTTAAAATTGTTTTGGAAGGCATTTTGGCCCCAAACTTGGTA
259 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGG-ATTTTGGCCCCAAACTTGGTA
* * * *
6427 GACGTGATCCTTGTATTTATGTTGGCATGCATAAAAAAATTCAGCTAAGAAC-GCGAAGTGTACA
323 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTG-GAAGTGTACA
*
6491 AGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
6556 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
6621 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATAATGTGTGCACA--------CCCCCCGA
517 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGGCCCCCCCGA
* * * * *
6678 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGC-A
582 TCGTCGAAACCCTAATGCCGCCGGTCAAGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACGA
** * * * * * *
6742 ATGAAAAATGTGACACCAGCACATGGCCAAGCCCAGCTTGTGCTG-TAGCAACCATCGGTCTGGT
646 A-GAAAAATACGACACCAGCACAT-GCCCAGCCCAGCATGTGCTGCCA-CAACCCTCGGTCCGAT
* * * *
6806 CCGATCATT-GACTGGGAATGAACTCCATATGCTTAAACTGGGAATGAACTCCGTATGCGTAAGT
708 CCGATC-TTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
6870 CAACCCACAAAACAAGCGTATGGGCGCTCAGTCGGACAGAGGGGCGAGATGCGCAAGCCGAGGAT
772 CAACCCACAAAACGAGCGTGTGGGCGCTCAATCGGACAGAGGGGCGGGATGCGCAAGCTGGGGAT
* * * * **
6935 CAGTCGGGTCCCCCTCTGCATGCTGTCGATCTTGCTGCCGTAACCCTCAGTCTGGTCC
837 CAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCC
* *
6993 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACTAAACGAGTGGGCAGGA-GGG
1 GATCTTAGACTGGGAATGAAC-TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGG
* * * *
7057 CGGGCACTACGTCGGCCAAAGA-ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
64 TGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
7121 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
7186 TCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * *
7251 AAACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACTTGGTA
259 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTA
* * * *
7316 GACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAACAAATCAGCTAAAAACTTGAAGTGTACAA
323 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAA
* *
7381 GATTTTGTGACCATTTGAAAAAAGAGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
7446 CTGTAAAATCTCAAA-GCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAAGGATACGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
7510 CAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGACCCCCCGAT
518 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGGCCCCCCCGAT
* * * ** * * * * * *
7575 CGTTGGAACCCTAAAGCTACTGATCAAGTTCTCTGGCGATGCTCGGGCGATGGTGCCCCGGCGAA
583 CGTCGAAACCCTAATGCCGCCGGTCAAGTTCTC-GACGATGCTCCGACGATGGTGCCCCGACGAA
* ** *
7640 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC-AGTCT
647 GAAAAATACGACACCAGCACATGCCC-AGCCCAGCATGTGCTGCCACAACCCTCGGTCCGA-TCC
* * *
7704 GATCTTAGACTGGGACTGAACTCCGTATGCATAGACAGGGAATGAACTCCATATGCCTAAGTCAA
710 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
7769 CCCACGAAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAG-TCGGGGATCG
775 CCCACAAAACGAGCGTGTGGGCGCTCAATCGGACAGAGGGGCGGGATGCGCAAGCT-GGGGATCA
* * *
7833 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTTGGCCTTGTCC
839 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCC
* *
7889 CATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAC
1 GATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGAC
* * * *
7954 GAGTGGGTAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
61 GGGTGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* * *
8019 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
126 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
8084 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
8149 TCAAAACTTTTTTCGGTTCGAGATTTTTTTAAAATTTTTTTGAAAGGATTCTTGGCCCCAAACTT
256 TTAAAACTTTTTACGGTTCAAGA-TTTTTTAAAATTTTTTTGGAAGGATT-TTGGCCCCAAACTT
* * * * *
8214 GGTAGATGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
319 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGT
* * * *
8279 ACAGGATTTAGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAAAGGCTACTGGCAGC
384 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
8344 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
449 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
8409 TGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCC
514 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCGGCCCCC
* * * *
8474 CCGATCGTCGAAACCCTAATGTCGCCGGTCAGGTTCTGCGACGATGCTCTGACGATGGTGCCCTG
578 CCGATCGTCGAAACCCTAATGCCGCCGGTCAAGTTCT-CGACGATGCTCCGACGATGGTGCCCCG
* *
8539 ATGAAGAAAAATACGACACCAGCACATGCTCCAGCCCAGCATGTGCTACCACAACCCTCGGTCCG
642 ACGAAGAAAAATACGACACCAGCACATGC-CCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCG
* * *
8604 AT-CGATCTTAGACTGGGAATGAACTACGTATGCTTAGACAGGGAATGAAGTTCGTATGCCTAAG
706 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAG
* * * *
8668 TCAACCCACAAAATGAGCGTGTGGCCGCTCAATCGGGCAGAGGGGCGGGATGTGCAAGCTGGGGA
771 TCAACCCACAAAACGAGCGTGTGGGCGCTCAATCGGACAGAGGGGCGGGATGCGCAAGCTGGGGA
* * * **
8733 TCAG-CTGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCTTTGGTCTGGTTT
836 TCAGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCC
** * *
8792 GATCTTAGACTGGGAACAAACTCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGACGGGTG
1 GATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGTG
*
8857 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGATGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
* * *
8922 AGGAACATCTTTATATTTATACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * *
8987 CCTGAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
**
9052 ACTTTTTACGGTTCAAGATTTTGCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGTAGA
9117 CGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGA
* *
9181 TTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
9246 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
9311 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCTCGATC
520 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCGGCCCCCCCGATC
*** * * * ** *
9376 GTCGAAAGTGTAATGCCGTCGGTCAAATTCTCCGTCGATGCTCCGGTGATGGTGCCCTGACGAAG
584 GTCGAAACCCTAATGCCGCCGGTCAAGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGAAG
* *** ** * * *
9441 AAAAGTACGGTGCCAGCACATGCTAGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATCCGA
648 AAAAATACGACACCAGCACATGC-CCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGA
9506 TCTTAGACTGGGAATGAACTCCGTATGC
712 TCTTAGACTGGGAATGAACTCCGTATGC
9534 CTAAGTGAAC
Statistics
Matches: 2236, Mismatches: 260, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
881 2 0.00
882 48 0.02
883 3 0.00
884 2 0.00
888 91 0.04
889 352 0.16
890 7 0.00
895 6 0.00
896 635 0.28
897 84 0.04
898 212 0.09
899 3 0.00
900 24 0.01
901 184 0.08
902 197 0.09
903 265 0.12
904 117 0.05
905 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (894 bp):
GATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGTG
GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGGCCCCCCCGATCGT
CGAAACCCTAATGCCGCCGGTCAAGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATACGACACCAGCACATGCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
AAACGAGCGTGTGGGCGCTCAATCGGACAGAGGGGCGGGATGCGCAAGCTGGGGATCAGTCGGGT
CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCC
Found at i:9921 original size:171 final size:170
Alignment explanation
Indices: 9599--9927 Score: 376
Period size: 171 Copynumber: 1.9 Consensus size: 170
9589 TGTGCAAGCC
* * ** * ** * *
9599 GGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTTGTCCGATCTTATACTG
1 GGGTCACCCTCTGCGTGCTGTCGATCCAACTACCGCAACCCTCAGGCCGGTCCGATCTTAGACTA
* * * * ** *
9664 GGAATGAACTCCGTATGCCTATGCCAATCGATGAAACAAGTGGGCAGGCTGGCAGGCGGGCACTG
66 GGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCAGGCAGGCAGGCGGGCACT-
***
9729 CATTGACCAGAGGGGCGGGATGCGCAAGTCGGGGATTCGCT
130 CATTGACCAGAGAAACGGGATGCGCAAGTCGGGGATTCGCT
* *
9770 GGGTCACCCTCTGCGTGCTGTCGATCCAACTGCTGCAACCCTCAGGCCGGTCCGATCTTAGACTA
1 GGGTCACCCTCTGCGTGCTGTCGATCCAACTACCGCAACCCTCAGGCCGGTCCGATCTTAGACTA
* *
9835 GGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-TGGACAGGCAGGCGGGCACT
66 GGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCAGG-CAGGCAGGCGGGCACT
*
9899 -A-TGCCGGTCAGAGAAACGGGATGCGCAAG
130 CATTGAC---CAGAGAAACGGGATGCGCAAG
9928 CCGTGGATCG
Statistics
Matches: 130, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
168 3 0.02
169 1 0.01
170 2 0.02
171 124 0.95
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.19
Consensus pattern (170 bp):
GGGTCACCCTCTGCGTGCTGTCGATCCAACTACCGCAACCCTCAGGCCGGTCCGATCTTAGACTA
GGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCAGGCAGGCAGGCGGGCACTC
ATTGACCAGAGAAACGGGATGCGCAAGTCGGGGATTCGCT
Found at i:12682 original size:717 final size:715
Alignment explanation
Indices: 9799--12689 Score: 3977
Period size: 714 Copynumber: 4.1 Consensus size: 715
9789 GTCGATCCAA
* * * *
9799 CTGCTGCAACCCTCAGGCCGGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
9864 GACGAAACGAGCAGG-TGGACAGGCAGGCGGGCACTATGCCGGTCAGAGAAACGGGATGCGCAAG
66 GACGAAACGAACGGGCAGG-CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAG
* * *
9928 CCGTGGATCGATAGGGTGTTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATTCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
9993 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGG
10058 ACTCGGTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC
260 ACTCGGTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC
* * *
10123 GTGAGTTTTCGTCCCAAACATGGTGGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
325 GTGAGTTTTCGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
10188 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
10253 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAATGGGGTGTGAGTTCT
455 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
* *
10317 CCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATG
520 CCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
10382 TGCGCAGACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCACCGGTCAGG---T-------
585 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGA
* * *
10437 T-CTCCGACGATGGTG-CCCTAACGAAGAAAAATGCGACACCAGCACATGCCT-------GCATG
650 TGCTCCGACGATGGTGCCCCGAA-GAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATG
10493 TG
714 TG
** *
10495 CTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
10560 GAAGAAACGAACGGGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
66 GACGAAACGAACGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGC
* *
10625 CGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCATATCTT-AGTATTTCTGCATGCCAATGCCAT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCTGCATGCCAATGCCAT
* * * * *
10689 TTTAATGG-TTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATAAAGTTTAATGGCAAGACG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGG
* * * * * * *
10753 ACTC-ATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTATAATTTTTT
260 ACTCGGTTTT-TATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTT
* * * * *
10817 CAGAAAGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
324 C-G--TGAGTTTTCGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
10882 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTC
386 AAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
10947 AGACACTTTAATGGCTA-TTG--G-----CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
451 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAG
* * * * *
11004 TTCTCGAGGTTTGATGATGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACATAT
516 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
11069 CATGTGTGCACACCCACCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTC
581 CATGTGCGCACA-CC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTC
* *
11134 CGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
644 CGACGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
11199 GCATGTG
709 GCATGTG
* * * *
11206 CTGCCGTAACTCT-AGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
1 CTGCCGCAACCCTCA-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
11270 CGACGAAATGAGCGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGTTGCGCAAG
65 CGACGAAACGAACGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAG
* * ** * *
11335 CTGTGGTTCGATAGGGTGGTAGGTGGGTTTATTCACATCTTTATATTTCTGCATGCCAGTGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
11400 TTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGG
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGG
11465 ACTCGGTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC
260 ACTCGGTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC
** * * * *
11530 GTGAGTTTTCATCCCAAACATGGTGGATGTGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
325 GTGAGTTTTCGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
11595 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
11660 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAATGGGGTGTGAGTTCT
455 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
*
11724 CCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
520 CCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
11789 TGCGCAGACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCACCGATCAGGTTCTCCTACGA
585 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGA
* * * * * * *
11854 TGCTCTGACGATGGTACCTCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAAC-TAG
650 TGCTCCGACGATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCAT-G
11918 TG
714 TG
* * * * * *
11920 CTGCCGCAACCATCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
11985 GACGAAACGAACGGGTAGGCGGGCGGGAGGGCAGTATGCCGGCCAAAGAGACGGGATGCGCAAGC
66 GACGAAACGAACGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGC
* *
12050 CGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
12115 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGATGA
196 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGA
* * * ** * *
12180 CT-TGTTTTCTTTTTTTCA-CATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTC
261 CTCGGTTTT-TATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC
* * * * *
12243 AGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
325 -G--TGAGTTTTCGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* ** * *
12308 AATTAAGATAAGAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
387 AATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
12373 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTTGTGAG
452 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGG-TGTGAG
*
12437 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
516 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
12502 CATGTGCGCACCCCCCCCGGTCCCCCCGATCGCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
581 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCG
** ** * * * * *
12567 GTGATGCTCCGGTGATGGTGCCCCGAAAAAGAAAAATGCGGCACCAGCACATGTCTAAGCCTAGC
646 ACGATGCTCCGACGATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGC
12632 ATGTG
711 ATGTG
* * * * *
12637 CTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGGATGAACTCCATATG
1 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
12690 ATTAGACTGG
Statistics
Matches: 1928, Mismatches: 218, Indels: 77
0.87 0.10 0.03
Matches are distributed among these distances:
690 19 0.01
691 83 0.04
692 2 0.00
693 41 0.02
694 4 0.00
695 106 0.05
696 175 0.09
697 4 0.00
698 132 0.07
703 1 0.00
704 40 0.02
705 4 0.00
709 131 0.07
710 2 0.00
711 185 0.10
712 105 0.05
713 50 0.03
714 353 0.18
715 2 0.00
716 246 0.13
717 242 0.13
718 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAACGGGCAGGCGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGA
CTCGGTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCG
TGAGTTTTCGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTC
CAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGAAGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
Found at i:14490 original size:25 final size:26
Alignment explanation
Indices: 14462--14513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14452 CCGGTCCGAT
14462 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14487 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14513 C
1 C
14514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15389 original size:26 final size:26
Alignment explanation
Indices: 15360--15410 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350 CCGGTCTGAT
*
15360 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
*
15386 CTTAGACTGAGAATGAACTCCGTAT
1 CTTACACTGAGAATGAACTCCGTAT
15411 CCGTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:15660 original size:899 final size:899
Alignment explanation
Indices: 11918--30118 Score: 12230
Period size: 899 Copynumber: 20.0 Consensus size: 899
11908 GCCCAACTAG
* * * * ** * *
11918 TGCTGCCGCAACCATCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11983 CCGACGAAACGAACGGGTAGGCGGGCGGGAGGGCAGTATGCCGGCCAAAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCAGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
12048 GCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
12113 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGAT
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
12178 GACTTGTTTTCTTTTTTTCAC-ATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
12242 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
12307 AAATTAAGATAAGAACCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12372 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
12437 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
12502 CATGTGCGCACCCCCCCCGGTCCCCCCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCC
582 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* ** ** * ** *
12566 GGTGATGCTCCGGTGATGGTGCCCCGAAAAAGAAAAATGCGGCACCAGCACATGTCTAAGCCTAG
646 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * * *
12631 CATGTGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGGATGAACTCCATATGATTAGA
711 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
12696 CTGGGAATGAACTCTGTATGCCTAAGTCAAACCATGAAATGAGCGTGCGGGCGCTCAGCCAGCCA
776 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** * * * * *
12761 GAGGCACGGGATACGTAAGCCGGGGATCGG-CTGGGTCCCCCTTTGCATGCTGTCGATCC
841 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCC
* * ** * *
12820 TGCT-ACTGCAACTCTC-AGTCCGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCC
1 TGCTGTC-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
12883 AATCGACGACACGA--GTG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
64 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
12944 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCCATT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
13009 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTTACGTGAAGTTTCATGGCAAGACAA
194 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
13074 CTCGTTTTCTATTTTTCACAAATTTTGAAACATTTTGCTGTTCGGGATTTTTTAAAATTTTTTTG
259 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
13139 GAAGGAGTTCTAGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTT-TTCGGCATGCACAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAA
* *
13203 TATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
388 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
13268 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGT
453 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
13333 TCTCGTGGTTTGATGACGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATTGCACATC
518 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
13398 ATGTGCCCACACCCTCCCCGGCCCCCCCGATCGAT-GGAACCCCATTGCCGTCGATCAGGTTCTT
583 ATGTGCGCACA-CC-CCCCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCAGGTTCTC
*
13462 CGGCGATGCTCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
645 CGGCGATGCT-C--CGA-----C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * ** *
13527 GCCCGAGCCCAGCATATGCTGCCGTAACCCTCGATCCGGTCCAATCTTAAACTATGAATGAACTT
699 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * ** * *
13592 CGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACAAGCGTGCGGGCT
764 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** * * * *
13657 CTCAGCCGTCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGC
829 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGT
*
13722 CAATCC
894 CGATCC
* * * ** ** * * * *
13728 TGCTGCCACAACCCTTGATCTTGTCCAACCTTAGACTGGAAATTAACTTCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
13793 CCGACGAAACGA-----C---CGGGCGGGCACTACGTCGACCAGAGAGACGAGATGTGCAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ** **
13850 TGGATCGATAGGG-GGTAGGTGGGTTTAGGGACATCTTTTTATTTCTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
13914 TATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * * * *
13979 CATTTTCTATTTTTCACGATTTTCAAAAATTTTTCCGGTTTGAGATTTTTTTAAAATTTTTTTGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGG
* * * *
14044 AAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATTCTTGTATATTTGCTGGCATGC-CAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
* * * * * *
14108 ATTCAGCCAAAAACTCAAAGTGTTCAAGATTTTGTGACCATTTGAACAAAGTGTGCCCATTTTAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14173 ACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** *
14238 CTCGAATTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCACACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* **** * * **
14302 TGTACGCACACCCCCCAAAACCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
** * * **
14367 GATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGAGGCACCAGCACATGCCCGAGCTCAATA
649 GATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
14431 TGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACT
713 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
14495 GGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGA
778 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * *
14560 GGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTATGTGCTGTCAATCC
843 GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * *
14617 TACTGTCACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGTCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14681 ATCAACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*** **
14746 GTGGAAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAACACCATT
130 GTGG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14810 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAACACGA
194 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
14875 CTCGTTTTTTATTTTTAAAAATTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
259 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * ** * *
14940 GAGGGAGTTTTGGCCCCCAACTTCTTAGACGTGATTCTTATATTTTTGTTGGCATGCACAAAAAA
324 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
15005 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
389 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** *
15070 ACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTT
454 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15135 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCA
519 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
15200 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCTGC
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * * * *
15265 GATACTCTGACGATGGTACCTCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCAT
649 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
15330 GTGCTGCCGCAACCATCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
714 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
15395 AGAATGAACTCCGTAT-CCGTAAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
779 GGAATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * *
15459 AAGGCGGGATGCGCAAGCCGGGGATCGGTCGGGGCCCCCTCTATGTGCTGTCAATCC
843 GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* *
15516 TACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15581 CCGATGAAACGAGCGGGCAGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
15646 TGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
15711 TATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
15776 CGTTTTCTATTTTTCACGATTTTTGAAACTTTATGCTGTTCGAGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
15841 AGGGGTTTTGGCCCCAAGCTTGGTAGATGTGATGCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
15906 TCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
15971 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACC
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
16036 CAAGGTTTGATGAGGGATAGGGGGCTAACATAAGGGCCAAGTACCAGCACCCATCGCACATCAGG
521 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
16101 TGCGCACACCCCCCCGGCCCCCCTGATCGGCGGAACCCCAATGCCGTCGGTCAGGTTTTCCAGTG
586 TGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * *
16166 ATACTCCGACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
650 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
16231 CGCTGCCACAA--C-C-AT-C-G---G----T---C------TG-A-TCCG-AT-CTTAGACTGG
715 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** * * * ***
16270 GAATGAACTCTATATGCCTAAGTCAACCTACGAAATGAGCGTGCAGGCGCTCAGCCGATGAGAGG
780 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * **
16335 GGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
845 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * *** * *
16390 TGCTGCCGTAACCCTTGGTCTACTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTGAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16455 CCGACGAAACAAGC--G--GGCGGGCGGGCACTACGCCGGCTAGAGAGATGGGATGCGCAAGTCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
***
16516 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
16581 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** * * *
16646 CTTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCAAGTTTTTTTTAATTTTTTTCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
** * * *
16711 AGGAGTTTTCACCCCAAACTTGGTAGACGTAATTCTTGTATTTTTGTTGGCATGCATAAAAAAAT
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
16776 TCAGCTAAAAACTCGAACTGTACAAGATTTTATGACCATTTGAAAAACGTGTCCCCATTTCAGAC
391 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
16841 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCT
456 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
16906 C-ATTGTTTGATGAGGGGTAGGGGGCCAATATAGGGGGCCAAGTTCCAGCACCCATCGCACATCA
521 CGA-GGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * * *
16970 TGTGCGCACACCGCTCGGCCCCCCCGATCGCCGGAACCCCATTACCGCCGGTTAGGTTCTCTGAC
584 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
** * *
17035 GATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGTAT
649 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
17100 GTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
714 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
17165 GGAATGGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAG
779 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * *
17230 GGGCAGGATGCGCAAGCCGGGGATCGG-CTTGGTTCCCCTCTACGTGCTGCCGATCC
844 GGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCC
* * * * * * * *
17286 TGCTGCCACAACCATCGGTCTGGTCCGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17351 CCGACGAAACGAGCGGACGGACGGGTGGGCGGGCACTACGTCGACTAGAGAGACGAGATGCGCAA
66 CCGACGAAACGAGC-G--GG-CAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ** **
17416 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGGATGTCTTCATATTTCTGTGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17481 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17546 GACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTT-CTGGTTCGGGATTTTTTAAAATTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTT
* *
17610 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAA
* *
17675 AAAAATTCAACTAAAAAGTCGAAGTGTACAAGATTTTGT-ATCCATTTGAAAAAAGTGTCCCCAT
385 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCAT
17739 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
449 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * * * *
17804 AAGTTCACGAGGTCTGATGAGGGATAGGGGGCAAATATAAAGGCCAAGTACCAGCACCCTTCACA
514 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** *
17869 CATCATACGCGCACA--------CCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCT
579 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** * **
17926 CCGGCGATGCTCCGACGTTGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCCG-GTG
644 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCCGAGCC
* * ** * * ** * * * * * * *
17990 AAGAAAAATACGGCACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCAGCTAGAGAGATGCG-
708 CAG-CATGTGCTG--CCG-C--AAC---C-CTCGGTCCGG---T-C-CGATCT-TAGA-CTGGGA
* * * * * * * * * * *
18054 ATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATG
756 AT--G-AACTCCGT--AT-GCT----TAG-A-CTGGG--AATG-A-A-CTCCGTA-TGC-CTAAG
* * **** * * ****** ** ** * * *** * *
18118 CCAATGCCATTTTTATG-GCTTGTAAATTCATACA-ATGGTCCCTTA-AGCCTTCACGTG-AAG-
802 TCAA-CCCA-CGAAACGAGCGTGCGGGCGC-T-CAGCCGG--CCAGAGGGGCGGGATGCGCAAGC
**** ** * ** ** * * ***
18178 -TTTCAT-GG-CAAG-ACGACTCT-TTTTCTATTTTTCAC
861 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATC-C
* * * * * *** * * * * * * * * ** *
18213 -GATTTTGGAA-ACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGGAA-GGAGT-TTTCA-C
1 TGCTGTCGCAACCCTCGATCCGG-TC-TGA---TCTTAGA----CTGGGAATGAACTCCGT-ATG
* * ***** * ** ******* ** ** * ******* * *
18273 CCCAAACTTGGTAGACGTAATTCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGTTAAAAAC
56 CCTAAGC-CAACCGACG-AA-ACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAG--AGAGAC
** * *** *** * * **** * ** *
18337 ----T-CG-AAG-CGTACA-AGATTTTGTGACCGTTTGAAAAAAG-A-ATC--CCCATTTCAGAC
116 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-C
* * ** * * * * * * * ** *
18390 ACTG-TAATGGC-TACTGACAGCAAACCTGTAAAATC-T-CAAATGCT-CTTTAAGGGGGTGTGA
180 A-TGCCAATGCCATTTTTA-TG---GCTTGTAAATTCATAC-AATGGTCCCTTAA--GCCT-TCA
* * * * **** **** **** * **** ** * **
18450 -GTTCTCGAATTTTGAT-G-AGGGATGGGGGGCCAACATATGGGCCAAG-TACCAGCATCCATCG
236 CG---T-GAAGTTTCATGGCA-AGACGACTCGTTTTC-TATTTTTCACGATTTTTG-AAACTTTT
* * **** * ** **** *** *
18511 CAC--ATC---ATGTGCGCACACCTCCCCCGGCCCCCCGA-TCGTTGGAACCCCAATACTGTCGG
294 TACGGTTCGGGAT-TTTTTAAAATTTTTTCGG---AAGGAGT-TTTGG--CCCCAA-ACT-T-GG
** * ** * * * * ** **
18570 TCAG--GTTCTCC-GGTGA-TGCT-TT-G-ACG-A-AGAAAAATGCGGC-ACCAGCACAT-GCCC
349 T-AGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTA--AAAAC-TCG-AA
* * * * * * * **** ** **
18624 GAG-CCCAGCA-TGTGCTGCCGCAACCCTCG--GTCTG-GT-CTGATCTT-AG--ACTGGGAAT-
408 GTGTACAAG-ATTTTG-TGAC-C-A--TTTGAAAAAAGTGTCCCCAT-TTCAGACACT-TTAATG
* * * * * ** ******* *****
18679 G-AACTCCGTATGCTTAGA-CTAGGAATGAA-CTCCGTATGC-C--TAA-GTCAACCCACAAAAC
465 GCTACT-GGCA-GC--AAACCT-GTAA--AATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** ** ** * ** * * *
18737 GA-GCATGCATCCCG-GGGATCGACCGGGTCCCCCTCTGCGTG-C-TGTCGATCCTGCTACCACA
522 GAGGTTTG-AT---GAGGGAT--A--GGGGGCCAATATAAGGGCCAAGT--A-CCAGC-ACC-CA
* * * ** ** *** * ** *
18798 ACCCTCAGTC-TG-GTCTG-ATCTTA-GACTAGGAATGAACTCCGTAT-G-CCTAAGCCAACCGA
574 TCGCACA-TCATGTG-C-GCA-C--ACCCCCCGG---CCCCCCCG-ATCGTCGGAA-CC--CCAA
** * * *** ** * * ******
18857 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGATG-TTTG-GGAT-TTTTTAAAATT
626 TG-C-CG---TC----GGTCA-GGTTCTC----C--GGCGATGCTCCGACGATGGTGCCCCGA--
* ** ** * ** ** * ** * *
18919 TTTTCGGAAG-GAGTTTTGGCCCCAAGCTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
673 ----C-GAAGAAAAATGCGGCACC-AGC-ACAT-G-CCCGAGCCCAGCA-----TGT-GC-TGC-
** *** * * * * ** ** *
18983 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCG
721 C-GCAACCCTC-GGT-----C-C---G-GT-C-CGATCTT-AGA-C-TGGGAATGAA--CTC-CG
* ** * ** * * * ** * ** * * ** * *
19048 -ATTTCAAACACT-TTAATGGCTACTGGCAGCAAACCT--GTAAAATCTC-AAATGCTCTTGAAG
766 TA-TGCTTAGACTGGGAAT-G-AACT--CCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CG
* * * ** ** *** * * * * ***
19108 GGGGTGTGAG--TTCTTGA--GGTTTGATGAGGGATAG--GGGGCCAAT--ATAAGGG-CCAAGT
825 GGCG-CTCAGCCGGCCAGAGGGGCGGGATG-CGCA-AGCCGGGG---ATCGGT-CGGGTCCCCCT
* * ** *
19164 ACCA-GTACCCATCGCACATCA
883 -CTACGT-GCTGTCG---ATCC
* ** * * ** ** **
19185 TG-TGT-GCACACCCCCCGGCCCCCCCGATCATCGGAACCCCA-ATTCCGTCGGTCA-GTTTCTC
1 TGCTGTCGCA-A-CCCTC-G---ATCCGGTC-T--G-ATCTTAGA---C-T-GGGAATG-AACTC
* * * * * * *
19246 CGGTGATG-GT--GCC--CCGACGAAATGAGCGGGTGGACGGGCGGGTGGGTACTACACCGGCTA
50 C-GT-ATGCCTAAGCCAACCGACGAAACGAGC--G-GG-CAGGCGGGCGGGCACTACGCCGGCCA
* *
19306 GAGAGACGGGATGCTCGAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
109 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
19371 TTCTACATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGT
174 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** *
19436 GAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGG-TCTG
239 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG
*
19500 GATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATT
304 GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * *
19564 TTTGTTGCCATACATAAAAAAATTCATCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTG
368 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
19629 AAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
433 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
19694 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
498 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
19759 ACCAGCACCCATCGCACATCATGTGTGCACATCCCCCCCGACCCCCCTGATCGCCGGAACCGCAA
563 ACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAA
* * *
19824 TGTCGTCGGTCAGGTTCT-C--C-A-------ACGATGGTGCACCGACGAAGAAAAATGGGGCAC
626 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * *
19878 CAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGA
691 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * * *
19943 ATGAACTCCGTATGGTTAGACTTGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAG
756 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *** ****
20008 TGTGGGCACTCAGCCGGCCAGAGGGGCGGGATACACAAATTGGGGATCGG-CTGGGTCTATTTCT
821 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCT
20072 ACGTGCTGTCGATCC
885 ACGTGCTGTCGATCC
** * * * * * *
20087 TGCTACCGTAACCCTCGGTCTGGGCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
20152 TCGACGAAACGAACGGGCGGATGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCAAAA
66 CCGACGAAACGAGCGGGC--A--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
20217 GCCGTGGATCGATAGGGTTGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
20282 TTTCTATGGCTTGTAAATTCGTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCCTGGCAAGTC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
20347 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCAGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * * *
20412 TGGAAGGAGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCACGTA-AAAA
322 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
20476 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
387 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20541 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
452 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20605 TTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
517 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
20670 CATGTGCGCGCACCCCCCTCGACCCCCCAGATCGGCGGAACCCCAATGTCGCCGGTCAGGTTCTC
582 CATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * * * * *
20735 CAGCGATGCTTCGACGATCGTGCCCCGACAAAGAAAAATGCAGCACCAACACATGCTCAAGCCTA
645 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
20800 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGTGAATGAACTCCGTAAGCTTAG
710 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
20865 ACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACAAGCGTGAGGGCGCTCAGCAGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
20930 AGAGGGGCGGGATGCGCAAGCCGGGGATAGGTCGGGTCCCCC-CTGCATG-TGGTCGATCT
840 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCT-GTCGATCC
* ** * * * * * *
20989 TCCTACCACAACCTTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
21054 CCGATGAAACGAGCGAGCAGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCAGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
21119 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
21184 TTCTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
21249 GACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCGGGATTTTTTAAAATTTTTT
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* ** ** * * *
21314 TGGAAGGAGTTTTGGCCCGC-AACTTATTAGATATGATCCTTGTATTTTTGTTGGCGTACGCAAA
322 CGGAAGGAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
21378 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
21443 CAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
21508 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATGTACCAGCTCCCATCACAC
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCAC
* * * *
21573 ATCATGTCCGCAC-CCCCTC-GCCACCCCGATCGTCGGAACCCCAATGCCG-CCGTCAGGTTCTC
580 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * *
21635 CGACGATGCT-CGACGATGGTGCCCCGACGAAGAAAAA-GCGACACCAGCACATGCCCAAGCCCA
645 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
21698 GCATGTGCT-ACGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAAATGAACT-CGTATGCTTA
710 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG-AATGAACTCCGTATGCTTA
21761 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-CCGGC
774 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * *
21825 CAGTGGGGCGGGATGCGCAAGTCGAGAATCGGCCGGGTCCCCTTCTGCATGCTGTTC-ATCC
839 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG-TCGATCC
* *
21886 TGCT-CCTGC-A-CCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGTC-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * ** *
21947 AACCGATTAAACGAGC--G--GGCGGACGGGCACTATACCGGCCAGAGGGACGGGAT-CTGCAA-
64 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAG
* * * *
22006 CCATGGAACGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
22071 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
193 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
22136 ACTCGTTTTCTATTTTTCACAATTTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAACCATTTG
258 ACTCGTTTTCTATTTTTCACGA-TTTTTG-AA------A-----C----TTTTT------A----
*
22201 CGGTTCGGGATTTTTTTAAAACTTTTTT-GGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGAT
296 CGGTTCGGGA-TTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
22265 CCTTGTATTTTTTTTGGCTTGCACAAAAAAAAATCAGCTACAAACTCGAAGTGTACAAGATTTTG
359 CCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
22330 TGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAACAAACCTGTAAA
423 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
22395 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGA
488 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* ** **
22460 AGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCTTCCGATCACCG
553 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCG
* **
22525 AAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
617 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * *
22590 ATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTT
682 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * * * * *
22655 AGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCAACCAACA
747 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* *
22720 AAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGATCGGGT
812 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* **
22784 CCCCCTCTGCGTGCTACCGATCC
877 CCCCCTCTACGTGCTGTCGATCC
* ** * * *
22807 TACTACCGCAACCATCGATCCGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
22872 TCGACGAAACGAGCGGACGGGCGGGTGGGCTTTACGCCGGCCAGAGAGACGGGATGTGCAAGCCG
66 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
22937 TGGATCGATAGGATGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
23002 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
23067 TGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCGGGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
23132 AGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACAA
326 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AA
* * * * *
23197 -TCAACTAAAAACTCAAAGCGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
23261 CACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
23326 TTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * **
23391 GTGCGCA-AACCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCAGCCGGTCAGGTTCTCCGATG
585 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * *
23455 ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCTCGAGACAAGCATG
650 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
23520 TGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGAAACGAACTCCGTATGCTTAGACTAG
715 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
23585 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCGCAGCTGGCCATAGG
780 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * **
23650 GGCGGGATGCCCAAGCAGGGGATCGATTGGGTCCCCCTCTGCGTGCTACCGATCC
845 GGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* ** * * *
23705 TGCTGTCGTAACCCTCGATCTAGTCTGATCTTAAACTGGAAATTAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
23770 CCGACGAAACGAGCGGGCGGGTAGGCGGGCAGGCACTACGTCGACCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCGGGC----AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
23835 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
23900 TTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *** ******* * ***
23965 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTTTTG-TTGGGCGGGCACTAAG
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT-TTTTAAAATTTTT
* * **** ** * * * * *** * ** **
24029 CCGGCCAGAGAGACGAGATACGCAAGCCGTGG-A-TCGAT-AGGGTGGTAGGTGGGTTTAGGC-T
321 TCGG-AAG-GAGTTTTG-GCCCCAA-ACTTGGTAGACG-TGATCCTTGTATTTTTG-TT-GGCAT
*** * * * ** * * *
24090 -CATCTTCATATTTCTGC---ATGC-C-AA-TG--CCA-TTTTTGTG-GC--TTGTAAATTCATA
379 GCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAA---A-A
* * * * * * ****
24142 CAATGGT-CCC--TT-ATG-C-CTTCATGTGAAGTTTCATGGCAAG-ACAACTCGTTTTCTTTTT
438 -AGT-GTCCCCATTTCA-GACACTTTA-ATG--GCTAC-TGGC-AGCA-AAC-C--TGT-AAAAT
* * * * * * * ** ** ** * **
24200 TTCATGAATTTTGAAACT-TTTTA-CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
490 CTCA--AA---TG---CTCTTTAAGGGGGT-GTGA-GTTCTCGAGGTTTGAT-G-AGG-GATAGG
*** ** * ** * * * * ** ** * ******
24263 ACCCCAA-ACT--TTG--TAGT-CGTG-ATCC-TTGTA-TTTTTGTTG-G--CATGCACAAAAAT
542 GGGCCAATA-TAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACCCCCCGGCCC
*** * *** * * * * ** * * * *** **
24316 ATTC-AGC-TAAAAACTCGAA----GT--GTACAAGATTTTGTGACCAT-TTGAAAAAAT-GT-C
605 CCCCGATCGTCGGAACCCCAATGCCGTCGGT-C-AGGTTCTCCGGCGATGCTCCGACGATGGTGC
** * * ** * *** * ** ***
24370 CCC-ATTATAGACACTTTAAT--GGCTACTAGCAGCAAACCTGTAAAATC-TCAAATGCT-CTTT
668 CCCGACGA-AGA-A---AAATGCGGC-ACCAGCA-CATGCCCG--AGCCCAGCATGTGCTGCCGC
*** ** ** * * * ** ** ** *
24430 AA--AGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGC-CAATATAAGGGCCAAGTACC
724 AACCCTCGGTCCG-G-TC-CGATCTTAGA-CTGGGA-A-TGAACTCCGTAT----GCTTAG-ACT
* * * * * * * ** *
24492 AGCACCCATCACACAT-CATGTGCGC-ACACCCCCTCGACCCCCCGATCGTCGAAAC-CCCAATG
778 GGGA---ATGA-AC-TCCGTATGC-CTA-A----GTC-A--ACCC-A----CGAAACGAGC-GTG
* * * *** * ** * ** **** **
24554 CCGTCGGTCAGGTTCTCTGG-C-GACGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCAC
823 CGGGCGCTCA-G--C-C-GGCCAGA-GGGGCGG-GAT-GCG-CAAGCCGGGGATCGGT-CGGGTC
** * * * * *
24617 CAGCAC-AAG-GCCGAGCCCAGCAT-G
878 CCCCTCTACGTG-C-TG-TC-G-ATCC
* * * * * * * *
24641 TGCTGCCGTAACCCTCGGA-CCAGCCTGATCTTAGATTGGGAATGAGCTCCGTATG-CTTAGAC-
1 TGCTGTCGCAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*** * * * * * *** ** * * * *
24703 TGGGAATGAACTCTGTATGCCTAAGTCA-ACCCAC-GAAACAAGCGTGCCAGCCAGAGGGGCGGG
65 ACCG-ACGAA-AC-G-A-G-C--GGGCAGGCGGGCGGGCACTA-C--GCCGGCCAGAGAGACGGG
* ** * ** * * * * * **
24766 ATGCGCAATCCAAGGATCGATCGGGTCTCCCTCTACGTGCTACCGATCCT-GCCATCGTAACCCC
119 ATGCGCAAGCCGTGGATCGATAGGG--T---GGTA-G-G-T--GGGT-TTAGGCA-C---ATCTT
* * * * * * * * * * * * * *
24830 CGGTCTGGTCTGATCTTAGACGCGGAATG-AACTCTGTATGCCTAAGCCAACTGACGAAACAAGC
169 C-ATAT-TTCTG--CAT-G-C-C--AATGCCA-TTTTTATGGCT-TG-TAAAT-TC-ATACAA-T
* * *** * *** *
24894 GGGCAGGCGTGCGGGCGGGGGGC-ACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGA-T
219 GGTC---CCT-TAAGC------CTTC-ACGT--G--A-AGTTTC---ATG-GCAAGAC---GACT
* ** * * * * * **
24957 CGATAGGGTGGTAGGTGGGTTTAGGCAC-A-TCTTCATA-TTTCTACGTGCTAAT-GCCA-TTTT
261 CG-T---TTTCTA--T---TTT--TCACGATTTTTGAAACTTTTTACG-G-T--TCGGGATTTTT
*** ** * ** * * *** **
25017 TATGGTTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCAATG-CAAGA-CG
311 TAAAATTT-T---TTC--GGAAGGAGT---TTTGGCC--C-C--AAACTTGGTA-GACGTGATC-
* * * * * * * ** *** ** * * *
25079 ACTCGT-TTTCTATT---TTTCAC----GATTTTTG--AAACTTTTTACG-GTTCAGGATTTT-T
360 -CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* ** * ** * ** *
25132 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTT-ATGGACGTGATCCCTGTATTTTTG-TA
424 GACCA---TTT-GAAAAAAG---TGTCCCC--A-TTTCA--GAC---A---CT-T-TAATGGCTA
* **** * * *** * * **
25195 --GGCATGCACAA----AAAAATTCATCTAAA-AAAATTGAA--GTGTACAAGATTTTGTGACTA
469 CTGGCA-GCA-AACCTGTAAAA-TC-TC-AAATGCTCTTTAAGGGGGTGTGAG-TTCT-CGA-GG
** ** **** * * * * * * ** ** * *
25251 TTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGG-CTACTGGCAGCAAAC-TTGCAAAATCT
526 TTTG--ATGAG-G--GATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACA--T
** * ****** * ** * ** * *
25314 CAAATGCTCTTTA-AGGGGGTGTGACTTCTCGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGG
582 CATGTGCGC---ACACCCCCCG-GCCCCCCCGA----T-C-GTCGGA-A----CCCCA-AT----
** * * * * ** ** ** *
25378 GCCAAGTACCAGCACCCATCGTACATCATGTGCGCA--CACCCCCCTTCGGCCCCCCGATCGACG
627 GCC--GT--C-G--GTCA-GGTTC-TC-CG-GCG-ATGCTCCGACGAT-GGTGCCCCGA-CGAAG
* * *
25441 AAACCCCAATGCCGTCGGTCAGGTTCTCCAGC-GATGCTCCGGGGATGGTGCCCCGACGATGAAA
678 AAA----AAT---G-CGG-CA------CCAGCACATGC-CC---GA----GCCCAG-C-ATG--T
** * * * * * * ****
25505 AATGCGGC-ACCAGCACATGCCCGAGCCCAGCATGTGCTTATGCAACCCTCGG--TCCGGTCCG-
716 GCTGCCGCAACC--CTC-GGTCCG-GTCC-G-A--T-CTTA-G--A--CTGGGAATGAACTCCGT
* * * * *
25566 AT-CTTACA-TAGGGAATGAACTCCGTATGCCTGAGTCAAACCACGAAATGAGCGTACGGGCGCT
767 ATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * **
25629 CAGTCGGCCAGAGGGGCGGGATGCGCAAGACGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTA
831 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCG
*
25694 ATCT
896 ATCC
* * * * * *
25698 TGCTGCCGCAACCCCCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAT
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
25763 CCGGCGACACGAGCGGGCGAGCGAGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
66 CCGACGAAACGAGCGGGC-A--G-GC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGC
25828 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
123 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
25893 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCA
188 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * ** *
25958 AGACAACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATT
253 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
** * * * * ** **
26023 TTTTCCTATGGAGTTTTGGGCCCAAACCTGGTAGACGTGAACCTTGTATTTTTGTTTCCATTTAC
318 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
26088 AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCA
383 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
26153 TTTTAGATACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTG-TCTTTAAGGGGGT
448 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGT
* * * * * *
26217 GTCAGTTCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAACGGCCAAGTCCCAGCACCCACCG
512 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * ** *
26282 CACATCATGTACGCACACCCCCCCGGCACACCCGATCATCAGAACCCCAATGCCACCGGACAGGT
577 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* *
26347 TCTCCGGCGATGCTCCGACGATGGTGCCCCCACGAAGAAAAGTGCGGCACCAGCACATGCCCGAG
641 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
*
26412 CCCAACATGTGCTGCCGCAA-CC-C--T-CGGT-C---C----A----G--T----T-CG-AT-C
706 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
26451 TTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGGAACGAGCGTGCGGGCTCTCAGCC
771 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * ** * * * * *
26516 GGCCAAAGGGGCAGGATGCATAAGTCGAGGATCAG-CCGGTCCCCCTCTGCGTGCTGTCGATCC
836 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * *
26579 TGCTATCGCAACCCTC-AGTCCGATCTGATCTTAGATTGGGAATGAACTCGGTATGCCTAAGCCA
1 TGCTGTCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
26643 ACTGACGAAACGAGCGGGCACGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGTA
65 ACCGACGAAACGAGCGGGCA----GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
26708 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
26773 ATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGT
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * **
26838 CAACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTATGGTTCAAGATTTTTT-AAATTTTT
256 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
26902 TCGGAAGGAGTTTTCGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
321 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
26967 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
386 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
27032 CAGACACTTAAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
451 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
27097 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
516 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
27162 TCATGTGCGCACACCCCCCCGG--CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
581 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** ** * * *
27225 CAACGATGCTCCGACGATGGCACCCCGACAAAGAAAAATGCGGTACCAGCATATGCCCGAGCCCA
645 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * *
27290 GCATGTGCTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAACGAACTCTGTATGCTTAG
710 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** * * *
27355 ACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGGTCAGTCGGCC
775 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * *
27420 AGACGGGCGGGATGCGCAAGTCAGGGATCGATCGGGT-CCCC-CT-C-TGC---C-A-AC
840 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * ** *
27471 --C-AT---AACCCTC-AGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCA
1 TGCTGTCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
27529 ACCAACGAAAC-A------A-GCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGGGCAAGCC
65 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
27586 ATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
27651 TTAGGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
27716 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
27781 AAGGACTTTTTGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCAAGCACAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
27846 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
27911 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAATTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
27975 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCACCGCACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
28040 GTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGATTTCACCGA
585 GTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG-GTTCTCCGG
* * *
28105 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
648 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * ** * *
28170 TTTGCTGCCACAATCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
713 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * ** * *
28235 GGGAATGAACTCCGTTTCCCTAAGTCCAA-CCACGAAACGAATGTGCAGGCACTCAGCCGGCCAG
778 GGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** * *
28299 AGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGT-CCCCTCTGTGTGCTATCGATGC
842 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * *
28356 TGTTG-CTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGTC-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
28420 ACCGACGAAACGAACGGGCGGGCGGGCAGGCAGGTGAGCACTATGCCGGCTAGAGAGACGGGATG
65 ACCGACGAAACG-A---GCGGGCAGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATG
*
28485 CGCAAGCCGT-GATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
122 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
28549 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
187 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
28614 AAGACGACCCGTTTTCTATTTTCCACGATTTTTGAAACTTTTTACGGTTTGGGAATTTTTTAAAA
252 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG-ATTTTTTAAAA
* *
28679 TTTTTT-GGAAGGAGTTTTAGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGC
316 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
28743 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCC
381 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
28808 CATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
446 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
28873 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCACC
511 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
28938 GCACATCATGTGTGCACACCCCCCGGCCCCCCCAATCATCGGAACCCCAATCCCGTCGGTCAGGT
576 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * ** *
29003 TATTCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAGAAATATGGCACCAGCACATGCCCGGG
641 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * ** * *
29068 CCCAGTATGTGCTGTCATAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
706 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
29132 TTAGACTAGGAATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGT--GAG-G-T----T
771 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
29189 GGCCAGAGGGGCGGGATGCGCTAGCCAGAGATCGGTCGGGTCCCCCTCTACGTGCTG-CTGATCC
836 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCC
* * * *** * * *
29253 TGCTGTCGTAACCCTTGGTCTAATTTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** *** * *
29318 CCGACGAAACG-GACGGGTGGGCGGGCGGGCACTACGCCGATTAGAGAGACGGGATACGTAAGCC
66 CCGACGAAACGAG-CGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
29382 GTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
29447 TTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** * *
29512 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTT-GG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
29576 AAGGAGTTTTGACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
29641 TTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
390 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
29706 CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGAGGTGTGAGTTC
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
29771 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
520 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
29836 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGTCAGGTTCTCCGGCG
585 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * * *
29901 ATGCCCCGACAATTGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGCATG
650 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * *
29966 TGCTGCTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTAG
715 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
30031 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGG
780 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
30096 GGCGGGATGCGCAAGCCGTGGAT
845 GGCGGGATGCGCAAGCCGGGGAT
30119 TGACAGGGTG
Statistics
Matches: 13487, Mismatches: 2784, Indels: 2060
0.74 0.15 0.11
Matches are distributed among these distances:
869 1 0.00
870 537 0.04
871 38 0.00
872 2 0.00
873 1 0.00
874 591 0.04
875 173 0.01
876 297 0.02
877 417 0.03
878 9 0.00
879 5 0.00
880 5 0.00
881 95 0.01
882 88 0.01
883 5 0.00
884 2 0.00
885 2 0.00
886 201 0.01
887 43 0.00
888 6 0.00
889 611 0.05
890 339 0.03
891 77 0.01
892 131 0.01
893 351 0.03
894 252 0.02
895 357 0.03
896 368 0.03
897 773 0.06
898 512 0.04
899 915 0.07
900 330 0.02
901 103 0.01
902 641 0.05
903 495 0.04
904 773 0.06
905 304 0.02
906 391 0.03
907 164 0.01
908 273 0.02
909 17 0.00
910 10 0.00
911 22 0.00
912 19 0.00
913 25 0.00
914 100 0.01
915 187 0.01
916 7 0.00
917 32 0.00
918 25 0.00
919 29 0.00
920 52 0.00
921 157 0.01
922 26 0.00
923 77 0.01
924 53 0.00
925 38 0.00
926 52 0.00
927 84 0.01
928 182 0.01
929 30 0.00
930 32 0.00
931 37 0.00
932 28 0.00
933 37 0.00
934 28 0.00
935 22 0.00
936 58 0.00
937 17 0.00
938 2 0.00
939 36 0.00
940 1 0.00
941 1 0.00
942 5 0.00
943 10 0.00
944 12 0.00
945 7 0.00
946 6 0.00
947 12 0.00
948 4 0.00
949 10 0.00
950 4 0.00
951 2 0.00
952 1 0.00
953 2 0.00
954 4 0.00
955 6 0.00
957 6 0.00
958 7 0.00
959 8 0.00
960 4 0.00
961 6 0.00
962 19 0.00
963 5 0.00
964 11 0.00
965 14 0.00
966 8 0.00
967 13 0.00
968 13 0.00
969 19 0.00
970 14 0.00
971 22 0.00
972 17 0.00
973 15 0.00
974 19 0.00
975 34 0.00
976 21 0.00
977 38 0.00
978 30 0.00
979 29 0.00
980 60 0.00
981 53 0.00
982 32 0.00
983 23 0.00
984 28 0.00
985 14 0.00
986 32 0.00
987 12 0.00
988 15 0.00
989 7 0.00
990 6 0.00
991 4 0.00
992 3 0.00
993 11 0.00
994 6 0.00
995 9 0.00
996 16 0.00
997 12 0.00
998 8 0.00
999 15 0.00
1000 9 0.00
1001 12 0.00
1002 3 0.00
1003 3 0.00
1004 3 0.00
1005 10 0.00
1006 8 0.00
1007 14 0.00
1008 7 0.00
1009 8 0.00
1010 11 0.00
1011 6 0.00
1012 9 0.00
1013 7 0.00
1014 3 0.00
1015 11 0.00
1016 3 0.00
1017 1 0.00
1018 4 0.00
1019 5 0.00
1020 9 0.00
1021 1 0.00
1022 1 0.00
1023 3 0.00
1024 23 0.00
1025 11 0.00
1026 9 0.00
1027 37 0.00
1028 15 0.00
1029 12 0.00
1030 15 0.00
1031 100 0.01
1032 21 0.00
1033 23 0.00
1034 18 0.00
1035 42 0.00
1036 11 0.00
1037 7 0.00
1038 4 0.00
1039 4 0.00
1040 6 0.00
1041 2 0.00
1042 8 0.00
1043 10 0.00
1044 9 0.00
1045 9 0.00
1047 7 0.00
1048 17 0.00
1049 4 0.00
1050 7 0.00
1051 14 0.00
1052 6 0.00
1053 10 0.00
1054 5 0.00
1055 4 0.00
1056 12 0.00
1057 49 0.00
1058 80 0.01
1059 15 0.00
1060 22 0.00
1061 17 0.00
1062 10 0.00
1063 11 0.00
1064 4 0.00
1066 1 0.00
1067 23 0.00
1068 3 0.00
1071 6 0.00
1072 6 0.00
1073 10 0.00
1074 2 0.00
1075 6 0.00
1077 2 0.00
1079 8 0.00
1080 16 0.00
1081 6 0.00
1082 2 0.00
1083 1 0.00
1084 6 0.00
1085 8 0.00
1086 2 0.00
1087 5 0.00
1088 2 0.00
1089 3 0.00
1090 12 0.00
1091 5 0.00
1093 2 0.00
1094 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
Found at i:17159 original size:26 final size:26
Alignment explanation
Indices: 17130--17182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17120 CCGATCTGAT
17130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17156 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17182 C
1 C
17183 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18703 original size:26 final size:26
Alignment explanation
Indices: 18665--18717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18655 CTGGTCTGAT
*
18665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18691 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18717 C
1 C
18718 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19969 original size:26 final size:26
Alignment explanation
Indices: 19932--19982 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19922 AGGTCCAATC
*
19932 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATAAACTCCGTATGG
* *
19958 TTAGACTTGGAATAAACTTCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
19983 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGG
Found at i:21229 original size:902 final size:899
Alignment explanation
Indices: 19259--30118 Score: 7254
Period size: 902 Copynumber: 11.9 Consensus size: 899
19249 TGATGGTGCC
* * * * * * * *
19259 CCGACGAAATGAGCGGGTGGACGGGCGGGTGGGTACTACACCGGCTAGAGAGACGGGATGCTCGA
1 CCGACGAAACGAGC-GGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
19324 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
64 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
19389 TTTTTACGGCTTGTAAATTCATACAATGG-CCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
129 TTTTTATGGCTTGTAAATTCATACAATGGTCCCC-TAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
19453 CGACCCGTTTTCTATTTTTCATAATTTTTGAAACTTTTT-ACGGTCTGGATTTTTTAAAAATTTT
193 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTT
* *
19517 TTGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATA--CATA
258 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACGCA-A
* *
19580 AAAAAATTCATCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
321 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
19645 TCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
386 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
19710 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
451 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
19775 CATCATGTGTGCACATCCCCCC-CGACCCCCCTGATCGCCGGAACCGCAATGTCGTCGGTCAGGT
516 CATCATGTGCGCGCA-CCCCCCTCGACCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* **
19839 TCT-C-C-A-------ACGATGGTGCACCGACGAAGAAAAATGGGGCACCAGCACATGC-CTGAG
579 TCTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTC-GAG
* * * *
19893 CCCAGCATGTGCTGCTGCAACCCTCGGTCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGG
643 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
19958 TTAGACTTGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCACTCAGCC
708 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCC
* * *** **** *
20023 GGCCAGAGGGGCGGGATACACAAATTGGGGATCGG-CTGGGTCTATTTCTAC-GTGCTGTCGATC
773 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTC-CCCCCTGCTGTGC--TCGATC
* * * * *
20086 CTGCTACCGTAACCCTCGGTCTGGGCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCA
834 CTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
20151 A
899 A
* * * * * **
20152 TCGACGAAACGAACGGGCGGATGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCAAAA
1 CCGACGAAACGAGC-GGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
20217 GCCGTGGATCGATAGGGTTGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
64 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * ** * *
20282 TTTCTATGGCTTGTAAATTCGTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCCTGGCAAGTC
129 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
20347 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCAGGATTTTTTAAAATTTTTT
194 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTT
* * * * *
20412 TGGAAGGAGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGC-ACGTAAAAA
259 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCAAAAA
*
20476 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
324 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
20541 AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
389 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20605 TTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
454 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
20670 CATGTGCGCGCACCCCCCTCGACCCCCCAGATCGGCGGAACCCCAATGTCGCCGGTCAGGTTCTC
519 CATGTGCGCGCACCCCCCTCGACCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
20735 CAGCGATGCTTCGACGATCGTGCCCCGACAAAGAAAAATGCAGCACCAACACATGCTCAAGCCTA
583 C-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCA
* * *
20800 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGTGAATGAACTCCGTAAGCTTAG
647 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
20865 ACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACAAGCGTGAGGGCGCTCAGCAGGCC
712 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCC
* * * *
20930 AGAGGGGCGGGATGCGCAAGCCGGGGATAGGTCGGGTCCCCCCTGCATGTGGTCGATCTTCCTAC
777 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGC-TGTGCTCGATCCTGCTAC
* * * * *
20995 CACAACCTTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
841 CGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* *
21054 CCGATGAAACGAGCGAGCAGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
1 CCGACGAAACGAGCG-GC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
21119 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCA
64 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
21184 TTCTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
129 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** ** *
21249 GACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCGGGATTTTTTAAAATTTTTT
194 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTT
** **
21314 TGGAAGGAGTTTTGGCCCGC-AACTTATTAGATATGATCCTTGTATTTTTGTTGGCGTACGC-AA
259 TGGAAGGAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACGCAAA
*
21377 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATT
322 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21442 TCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
387 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
21507 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATGTACCAGCTCCCATCACA
452 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCA
*
21572 CATCATGT-C-CGCA-CCCCCTCG-CCACCCCGATCGTCGGAACCCCAATGCCGCC-GTCAGGTT
516 CATCATGTGCGCGCACCCCCCTCGACC-CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* *
21632 CTCCGACGATGCT-CGACGATGGTGCCCCGACGAAGAAAAA-GC-GACACCAGCACATGCCCAAG
580 CTCCG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCTCGAG
* * *
21694 CCCAGCATGTGCT-ACGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAAATGAACT-CGTATG
643 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG-AATGAACTCCGTATG
*
21757 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
707 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGC
* * * * * * *
21821 CGGCCAGTGGGGCGGGATGCGCAAGTCGAGAATCGGCCGGGTCCCCTTCTGCATGCTGTTC-ATC
772 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC-CCTGC-TG-TGCTCGATC
* *
21885 CTGCT-CCTGC-A-CCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
834 CTGCTACC-GCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
21946 CAA
897 CAA
** * ** *
21949 CCGATTAAACGA------GCGGGCGGACGGGCACTATACCGGCCAGAGGGACGGGAT-CTGCAA-
1 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GCAAG
* * * * *
22006 CCATGGAACGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
65 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
22071 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
130 TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
22136 ACTCGTTTTCTATTTTTCACAATTTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAACCATTTG
195 ACTCGTTTTCTATTTTTCACAA-TTTTTG-AA------A-----C----TTTTT--AA--A----
* *
22201 CGGTTCGGGATTTTTTTAAAACTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATC
235 --GTTCGGGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
22266 CTTGTATTTTTTTTGGCTTGCACAAAAAAAAATCAGCTACAAACTCGAAGTGTACAAGATTTTGT
297 CTTGTATTTTTGTTGGC-TACGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
22331 GACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAACAAACCTGTAAAA
361 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
22396 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAA
426 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
22461 GGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCC-CGGCCCTTCCGATCACCG
491 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCTCGACCC-CCCGATCGCCG
* * **
22525 AAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
555 GAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
** * *
22590 ATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTT
619 ATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* * * * * *
22655 AGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCAACCAACA
684 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
22720 AAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGATCGGGT
749 AAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * *
22784 CCCCCTCTGC-GTGCTACCGATCCTACTACCGCAACCATCGATCCGGTCTAATCTTAGATTGGGA
814 CCCCC-CTGCTGTGCT--CGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGA
22848 ATGAACTCCGTATGCCTAAGCCAA
876 ATGAACTCCGTATGCCTAAGCCAA
* * * ** *
22872 TCGACGAAACGAGC-G-GACGGGCGGGTGGGCTTTACGCCGGCCAGAGAGACGGGATGTGCAAGC
1 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
22935 CGTGGATCGATAGGATGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
66 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
23000 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
131 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** ** * *
23065 CTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCGGGATTTTTTAAAATTTTTTCG
196 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTTTG
* *
23130 GAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAA
261 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCA-AAAAA
* * * * *
23194 CAA-TCAACTAAAAACTCAAAGCGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTC
325 -AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
23258 AGACACTTTAATGACTACTGGCAGTAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAG
389 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
23323 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACAT
454 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * * *
23388 CATGT--GCGCAAACCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCAGCCGGTCAGGTTCTCC
519 CATGTGCGCGCACCCCCCTCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
23451 GATGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCTCGAGACAAG
584 G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAG
* ** * * *
23516 CATGTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGAAACGAACTCCGTATGCTTAGA
648 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
23581 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGGGCGCGCAGCTGGCC
713 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAGCCGGCC
* * * * *
23645 ATAGGGGCGGGATGCCCAAGCAGGGGATCGATTGGGTCCCCCTCTGC-GTGCTACCGATCCTGCT
777 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC-CTGCTGTGCT--CGATCCTGCT
** * ** * *
23709 GTCGTAACCCTCGATCTAGTCTGATCTTAAACT-GGAAATTAACTCCGTATGCCTAAGCCAA
839 ACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGG-AATGAACTCCGTATGCCTAAGCCAA
* * * *
23770 CCGACGAAACGAGCGGGCGG-GTAGGCGGGCAGGCACTACGTCGACCAGAGAGACGGGATGCACA
1 CCGACGAAACGAGC-GGCGGCG--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
23834 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCC
63 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
23899 ATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
128 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ***
23964 CAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT--A---C--GA-TTTTT---GTTGGG
193 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTT
** *** ** ** * ** * * * * ** * *
24018 CGGGCACTAAG--CCGGCCAGAGAGAC--GAG-ATACGCAAGCCGTGGATCGATAGGGTGG-TAG
258 TTGG-AAGGAGTTTTGGCCCCA-A-ACTTG-GTAGACGTGATCCTTGTAT--TTTTGTTGGCTAC
****** *** * * * ** * * *
24077 GTGGGTTTAGGCTCATCTTCATATTTCTGCA-TG-CCAATGCCATTTTTGTG-GC--TTGTAAAT
317 G-CAAAAAAAATTCAGC-TAAAAACTC-GAAGTGTACAA-G--A-TTTTGTGACCATTTG-AAA-
* * * * * *
24137 TCATACAATGGT-CCC--TT-ATG-C-CTTCATGTGAAGTTTCATGGCAAG-ACAACTCGTTTTC
373 --A-A-AGT-GTCCCCATTTCA-GACACTTTA-ATG--GCTAC-TGGC-AGCA-AAC-C--TGT-
**** * * * * * * * ** ** **
24195 TTTTTTTCATGAATTTTGAAACT-TTTTA-CGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
422 AAAATCTCA--AA---TG---CTCTTTAAGGGGGT-GTGA-GTTCTCGAGGTTTGAT-G-AGG-G
* ** *** ** * ** * * * * ** *
24258 TTTTGACCCCAA-ACT--TTG--TAGT-CGTG-ATCC-TTGTA-TTTTTGT-TG-GCA------T
474 ATAGGGGGCCAATA-TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCT
* **** *** * ** ** ** * * ** * * *** **
24306 -G-CACAAAAATATTC---AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT-TTGAAAAA
538 CGACCCCCCGATCGCCGGAACCCCAATGC-CGCCG-GT-C-AGGTTCTCCG-CGATGCTCCGACG
** * * * ** * * *
24365 AT-GT-CCCC-ATTATAGACACTTTAATGGCTA-CTAGCAGCAAACCTG-TAAAATCTCA--A-A
598 ATGGTGCCCCGACGA-AGA-A---AAAT-GC-AGC-ACCAGC--ACATGCT-CGAGCCCAGCATG
*** *** * ** * * * ** **
24422 TGCT-CTTTAA--AGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGC-CAATATAAGGG
652 TGCTGCCGCAACCCTCGGTCTG-G-TC-CGATCTTAGA-CTGGGA-A-TGAACTCCGTAT----G
** ** * * * * * *
24483 CCAAGTACCAGCACCCATCACACAT-CATGTGCGC-ACACCCCCTCGACCCCCCGATCGTCGAAA
707 CTTAG-ACTGGGA---ATGA-AC-TCCGTATGC-CTA-A----GTC-A--ACCC-A----CGAAA
* * * * * ** * * * **
24546 CCCCAATGCCGTCGGTCAGGTTCTCTGGCGACGCTCCGG--TGATGGTGCCCCGACGAAGAAAAA
752 ---CGA-G-CGT--G--AGG-GCGCT--C-A-G--CCGGCCAGA-GG-GGCGGGATG-CGCAAGC
* * * ** * * * * * * * *
24609 TGCGGCACCAGCACAAGG-CCGAGCCCAGCATGTGCTGCCGTAACCCT-CGGACCAGCCTGATCT
798 CG-GGGATC-GGTC-GGGTCC--CCCCTGC-TGTGCT--CG--ATCCTGC-TACC-G-C-AACCC
* ** * * *
24672 TAGATTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
849 TCGATCCGG--T---CT--G-AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ***
24732 CCCACGAAACAAGCGTGCCAGCCAGAG-GGGCGGG-A-TGCGCAATCCA-AGGATCGATCGGG-T
1 CCGACGAAACGAGCG-G-C-GGC-GGGCGGGCGGGCACTACGCCGGCCAGA-GA--GA-CGGGAT
* *** * * ** ** * * ** * * *
24792 -CTCCCTCTACGTGCTACCGAT--CCTGCCA--T-CG-TAACCCCCGGTCTGGTC-TGATCT-TA
58 GCGCAAGC--CGTG-GATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCT--TCAT-ATTTCTA
* * * * * * * * * * * * ** * * *
24848 GACGCGGAATG-AACTCTGTATGCCTAAGCCAACTGACGAAACAA--G-CGGGC-AGGCGTGCGG
116 CATGC-CAATGCCA-TTTTTATGGCT-TG-TAAAT-TC-ATACAATGGTC-CCCTAAGCCTTC--
* * ** * * * * **** ** *** * *** * * **
24908 GCGGGGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGG
172 ACGTGAAG--TTTCAT-GG-C--A-AGACGA-CT-CGTTTTCTATTTTTC-ACAATTTTTGAAAC
* * ** * * ** * *
24972 TGGGTTTAGGCACATCTTC-ATATTTCTACGTGCTAATGCCATTTTTATGGTTTGTAAATTCATA
227 T--TTTTA---A-A-GTTCGGGATTT-T---T--TAA---AATTTTTTTGG-AAG-GAGTT--T-
* * * * *** ** **** ** * ***** ***
25036 CAATGGTCCCTTAAGCCT--T-CACGTGAAGTTTCAATGCAAGACGACT-CGTTTTCTATTTTTC
271 ---TGG-CCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACG-CAAAAAAAATTC
* ** ** * * * * ** * ** *
25097 ACGATTTTTGAAACTTTTTACG-GTTCAGGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCC
330 A-G---CTAAAAAC--TCGAAGTGTACAAGATTTTGTGACCA---TTT-GAAAAAAG---TGTCC
** * *
25160 CCAAACTTT-ATGGACGTGATCCCTGTATTTTTG-TA--GGCATGCACAA----AAAAATTCATC
382 CC--A-TTTCA--GAC---A---CT-T-TAATGGCTACTGGCA-GCA-AACCTGTAAAA-TC-TC
**** * * *** * * ** ** ** **** *
25217 TAAA-AAAATTGAA--GTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCTATTTCAGACA
430 -AAATGCTCTTTAAGGGGGTGTGAG-TTCT-CGA-GGTTTG--ATGAG-G--GATA-GGGGGCCA
* * * * * ** ** * * ** * ** ****** * **
25279 CTTTAATGG-CTACTGGCAGCAAAC-TTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTC
485 ATATAAGGGCCAAGTACCAGCACCCATCGC-ACA--TCATGTGCGC-GCACCCCCCT-CGACCCC
* ** * * ** *
25342 TCGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAT
545 CCGA----T-C-GCCGGA-A----CCCCA-AT----GCC--G--CC-G--GTCA-GGT---TC-T
** * ** ** ** * * **
25407 GTGCGCA--CACCCCCCTTCGGCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCTCC
582 CCGCG-ATGCTCCGACGAT-GGTGCCCCGA-CGAAGAAA----AATGCAG-C-ACCA-G-----C
* *** * * * * * *
25470 AGCGATGCTCCGGGGATGGTGCCCCGACGATGAAAAATGCGGC-ACCAGCACATGCCCGAGCCCA
632 A-C-ATGCT-C---GA----GCCCAG-C-ATG--TGCTGCCGCAACC--CTC-GGTCTG-GTCC-
* **** *
25534 GCATGTGCTTATGCAACCCTCGG--TCCGGTCCG-AT-CTTACA-TAGGGAATGAACTCCGTATG
678 G-A--T-CTTA-G--A--CTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATG
* * * *
25594 CCTGAGTCAAACCACGAAATGAGCGT-ACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
733 CCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * *
25658 ACGGGGATCGGCCGGGTCCCCCTCTGC-GTGCT-GTTAATCTTGCTGCCGCAACCCCCGGTCTGG
797 CCGGGGATCGGTCGGGTCCCCC-CTGCTGTGCTCG---ATCCTGCTACCGCAACCCTCGATCCGG
* * *
25721 TTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAT
858 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
25763 CCGGCGACACGAGCGGGCGAGCGAGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
1 CCGACGAAACGAGC-GGCG-GC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
25828 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
60 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
25893 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCA
125 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCA
* * *** *
25958 AGACAACTCGTTTTCTATTTTTCA-AGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAAT
190 AGACGACTCGTTTTCTATTTTTCACA-ATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAAT
*** * * * * * * ***
26022 TTTTTCCTATGGAGTTTTGGGCCCAAACCTGGTAGACGTGAACCTTGTATTTTTGTT-TCCATTT
254 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGC
* *
26086 ACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCC
319 A-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
26151 CATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTG-TCTTTAAGGGG
383 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGG
* * * * * *
26215 GTGTCAGTTCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAACGGCCAAGTCCCAGCACCCAC
447 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * ** * * *
26280 CGCACATCATGTACGCACACCCCCC-CGGCACACCCGATCATCAGAACCCCAATGCCACCGGACA
512 CGCACATCATGTGCGCGCACCCCCCTCGAC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* * * *
26344 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCCACGAAGAAAAGTGCGGCACCAGCACATGCCC
576 GGTTCTCC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTC
*
26409 GAGCCCAACATGTGCTGCCGCAA-CC-C--TC-GGT-C---C----A----G--T----T-CG-A
640 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
26449 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGGAACGAGCGTGCGGGCTCTCA
705 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCA
* * ** * * * *
26513 GCCGGCCAAAGGGGCAGGATGCATAAGTCGAGGATCAG-CCGGTCCCCCTCTGC-GTGCTGTCGA
770 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC-CTGCTGTGC--TCGA
* * * * *
26576 TCCTGCTATCGCAACCCTC-AGTCCGATCTGATCTTAGATTGGGAATGAACTCGGTATGCCTAAG
832 TCCTGCTACCGCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
26640 CCAA
896 CCAA
* * * * *
26644 CTGACGAAACGAGCGGGCACGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGTAA
1 CCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
26709 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCA
64 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
26774 TTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTC
129 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * ** **
26839 AACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTATGGTTCAAGATTTTTT-AAATTTTTT
194 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTT
* * * * *
26903 CGGAAGGAGTTTTCGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCACAAA
259 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCA-AAA
*
26967 AAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
323 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
27032 CAGACACTTAAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
388 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
27097 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
453 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
27162 TCATGTGCGCACACCCCCC-CG-GCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
518 TCATGTGCGCGCACCCCCCTCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * * * *
27225 CAACGATGCTCCGACGATGGCACCCCGACAAAGAAAAATGCGGTACCAGCATATGCCCGAGCCCA
583 C-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCA
* *** * *
27290 GCATGTGCTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAACGAACTCTGTATGCTTAG
647 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
** * * * *
27355 ACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGGTCAGTCGGCC
712 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCC
* * * *
27420 AGACGGGCGGGATGCGCAAGTCAGGGATCGATCGGGT-CCCCCT-C--TGC-C-A-------ACC
777 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCTGTGCTCGATCCTGCTACC
** * * ** * *
27472 ATAACCCTC-AGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
842 GCAACCCTCGA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
27530 CCAACGAAAC-A---------AGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGGGCAAGC
1 CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
27585 CATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
66 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * * *
27650 TTTAGGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGA
131 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
27715 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCG
196 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTTTG
* * * * *
27780 GAAGGACTTTTTGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCCAAGCACAAAAA
261 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCA-AAAAA
*
27844 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
325 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
27909 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAAT
390 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
27973 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCACCGCACATC
455 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
28038 ATGTGTGCACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGATTTCAC
520 ATGTGCGCGCACCCCCCTC-GACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG-GTTCTC
* * * * *
28102 CGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
583 CG-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCA
* * * *** * *
28167 GCATTTGCTGCCACAATCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAG
647 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** *
28232 ACTGGGAATGAACTCCGTTTCCCTAAGTCCAA-CCACGAAACGAATGTGCA-GGCACTCAGCCGG
712 ACTGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTG-AGGGCGCTCAGCCGG
* * * * *
28295 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCTCTG-TGTGCTATCGATGCTGT
775 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCTGTGC--TCGATCCTGC
* * * * *
28359 TGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
838 TACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
28421 CCGACGAAACGAACGGGCGGGCGGGCAGGCAGGTGAGCACTATGCCGGCTAGAGAGACGGGATGC
1 CCGACGAAACGAGC-GGC-GGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGC
* *
28486 GCAAGCCGT-GATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
60 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
28550 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
125 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCA
* * * ** *
28615 AGACGACCCGTTTTCTATTTTCCACGATTTTTGAAACTTTTTACGGTTTGGGAATTTTTTAAAA-
190 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGG-ATTTTTTAAAAT
* * *
28679 TTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGC-ATGC
254 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGC
*
28743 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCC
319 A-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
28808 CATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGG
383 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
28873 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCACC
448 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * ** * *
28938 GCACATCATGTGTGCACACCCCCC-GGCCCCCCCAATCATCGGAACCCCAATCCCGTCGGTCAGG
513 GCACATCATGTGCGCGCACCCCCCTCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
29002 TTATTCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAGAAATATG--GCACCAGCACATGCCC
578 TT-CTCCGCGATGCTCCGACGATGGTGCCCCGACGAAGA-AAA-ATGCAGCACCAGCACATGCTC
* * * ** *
29065 GGGCCCAGTATGTGCTGTCATAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
640 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
29129 TGCTTAGACTAGGAATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGTGA--G-G-T--
705 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCA
* * * * *
29188 --TGGCCAGAGGGGCGGGATGCGCTAGCCAGAGATCGGTCGGGTCCCCCTCTAC-GTGCTGCTGA
770 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC-CTGCTGTGCT-C-GA
** * * * *** * * * *
29250 TCCTGCTGTCGTAACCCTTGGTCTAATTTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
832 TCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
29315 CAA
897 CAA
* *** * *
29318 CCGACGAAACG-GAC-G-GGTGGGCGGGCGGGCACTACGCCGATTAGAGAGACGGGATACGTAAG
1 CCGACGAAACGAG-CGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
29380 CCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
65 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* *
29445 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACG
130 TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** ** * *
29510 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT-ACGATTTGGGATTTTTTAAAA-TTTTT
195 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAG-TTCGGGATTTTTTAAAATTTTTT
* * *
29573 TGGAAGGAGTTTTGACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGC-ATGCATAAA
259 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCA-AAA
* *
29637 AAAATTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
323 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
29702 CAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGAGGTGTGA
388 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
29767 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
453 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
29832 TCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGTCAGGTTCTC
518 TCATGTGCGCGCACCCCCCTCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
29896 CGGCGATGCCCCGACAATTGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGC-CTGAGCCA
583 C-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTC-GAGCCC
* ** * * *
29960 AGCATGTGCTGCTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCGGTATGCTTA
646 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
30025 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGC
711 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGC
*
30090 CAGAGGGGCGGGATGCGCAAGCCGTGGAT
776 CAGAGGGGCGGGATGCGCAAGCCGGGGAT
30119 TGACAGGGTG
Statistics
Matches: 7876, Mismatches: 1456, Indels: 1265
0.74 0.14 0.12
Matches are distributed among these distances:
874 418 0.05
875 167 0.02
876 291 0.04
877 414 0.05
878 10 0.00
879 2 0.00
880 4 0.00
881 92 0.01
882 86 0.01
883 5 0.00
884 2 0.00
885 1 0.00
886 202 0.03
887 50 0.01
888 8 0.00
889 408 0.05
890 266 0.03
891 74 0.01
892 147 0.02
893 345 0.04
894 89 0.01
895 67 0.01
896 107 0.01
897 419 0.05
898 198 0.03
899 239 0.03
900 197 0.03
901 46 0.01
902 556 0.07
903 336 0.04
904 150 0.02
905 99 0.01
906 363 0.05
907 162 0.02
908 9 0.00
909 12 0.00
910 6 0.00
911 16 0.00
912 13 0.00
913 18 0.00
914 95 0.01
915 180 0.02
916 6 0.00
917 35 0.00
918 25 0.00
919 31 0.00
920 41 0.01
921 145 0.02
922 15 0.00
923 56 0.01
924 1 0.00
925 2 0.00
926 7 0.00
927 41 0.01
928 143 0.02
929 6 0.00
930 2 0.00
931 5 0.00
935 2 0.00
936 4 0.00
937 2 0.00
938 2 0.00
939 6 0.00
940 2 0.00
941 2 0.00
942 8 0.00
943 12 0.00
944 16 0.00
945 8 0.00
946 5 0.00
947 4 0.00
948 10 0.00
949 1 0.00
950 6 0.00
951 3 0.00
953 7 0.00
955 4 0.00
958 2 0.00
959 6 0.00
960 10 0.00
961 18 0.00
962 63 0.01
963 22 0.00
964 15 0.00
965 12 0.00
966 7 0.00
967 4 0.00
968 2 0.00
969 1 0.00
970 2 0.00
971 5 0.00
972 6 0.00
973 7 0.00
974 20 0.00
975 14 0.00
976 5 0.00
977 1 0.00
978 6 0.00
979 5 0.00
980 12 0.00
981 13 0.00
982 6 0.00
983 10 0.00
986 3 0.00
987 4 0.00
988 4 0.00
989 1 0.00
990 6 0.00
992 1 0.00
993 5 0.00
994 4 0.00
995 3 0.00
996 9 0.00
997 7 0.00
998 5 0.00
999 2 0.00
1000 11 0.00
1001 19 0.00
1004 1 0.00
1005 5 0.00
1006 16 0.00
1007 16 0.00
1008 15 0.00
1009 7 0.00
1010 13 0.00
1011 7 0.00
1012 6 0.00
1013 8 0.00
1014 3 0.00
1015 9 0.00
1016 6 0.00
1017 6 0.00
1018 1 0.00
1019 6 0.00
1020 4 0.00
1021 3 0.00
1022 3 0.00
1023 12 0.00
1024 26 0.00
1025 18 0.00
1026 10 0.00
1027 37 0.00
1028 17 0.00
1029 15 0.00
1030 21 0.00
1031 153 0.02
1032 33 0.00
1033 37 0.00
1034 37 0.00
1035 65 0.01
1036 26 0.00
1037 12 0.00
1038 9 0.00
1039 4 0.00
1040 12 0.00
1041 4 0.00
1042 10 0.00
1043 17 0.00
1044 10 0.00
1045 18 0.00
1046 3 0.00
1047 12 0.00
1048 21 0.00
1049 9 0.00
1050 13 0.00
1051 23 0.00
1052 8 0.00
1053 14 0.00
1054 9 0.00
1055 5 0.00
1056 12 0.00
1057 56 0.01
1058 87 0.01
1059 16 0.00
1060 29 0.00
1061 26 0.00
1062 15 0.00
1063 12 0.00
1064 5 0.00
1065 1 0.00
1066 2 0.00
1067 31 0.00
1068 4 0.00
1071 8 0.00
1072 8 0.00
1073 10 0.00
1074 3 0.00
1075 10 0.00
1077 2 0.00
1079 12 0.00
1080 23 0.00
1081 9 0.00
1082 4 0.00
1083 2 0.00
1084 9 0.00
1085 11 0.00
1086 4 0.00
1087 10 0.00
1088 2 0.00
1089 3 0.00
1090 17 0.00
1091 7 0.00
1093 3 0.00
1094 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCGGGATTTTTTAAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACGCAAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCGCACCCCCCTCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCTGTGCTCGATCCTGCTACCGCAA
CCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
Found at i:21767 original size:26 final size:26
Alignment explanation
Indices: 21731--21783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21721 CCGGTCCGAT
21731 CTTAGAATGGGAAATGAACT-CGTATG
1 CTTAGAATGGG-AATGAACTCCGTATG
*
21757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
21783 C
1 C
21784 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:22188 original size:26 final size:26
Alignment explanation
Indices: 22159--22215 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
22149 TTTTCACAAT
**
22159 TTTTTGAAACTTTTTACGGTTCGAGA
1 TTTTTGAAACCATTTACGGTTCGAGA
* *
22185 TTTTTGAAACCATTTGCGGTTCGGGA
1 TTTTTGAAACCATTTACGGTTCGAGA
22211 TTTTT
1 TTTTT
22216 TTAAAACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.47
Consensus pattern (26 bp):
TTTTTGAAACCATTTACGGTTCGAGA
Found at i:23592 original size:26 final size:26
Alignment explanation
Indices: 23549--23601 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
23539 CCAGTTCGAT
23549 CTTAGACTGGAAACGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
*
23575 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGAAACGAACTCCGTATG
23601 C
1 C
23602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAACGAACTCCGTATG
Found at i:24180 original size:219 final size:219
Alignment explanation
Indices: 23796--24224 Score: 696
Period size: 219 Copynumber: 2.0 Consensus size: 219
23786 GCGGGTAGGC
* * * *
23796 GGGCAGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGGCAGGCACTAAGCCGACCAGAGAGACGAGATACACAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
23861 GGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
23926 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTT
131 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
23991 TTGAAACTTTTTACGATTTTTGTT
196 TTGAAACTTTTTACGATTTTTGTT
* * *
24015 GGGCGGGCACTAAGCCGGCCAGAGAGACGAGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGGCAGGCACTAAGCCGACCAGAGAGACGAGATACACAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
24080 GGTTTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
24145 TGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTTTTTTCATGAATT
131 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
24210 TTGAAACTTTTTACG
196 TTGAAACTTTTTACG
24225 GTTCGAGATT
Statistics
Matches: 192, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
219 192 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (219 bp):
GGGCAGGCACTAAGCCGACCAGAGAGACGAGATACACAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
TTGAAACTTTTTACGATTTTTGTT
Found at i:24706 original size:26 final size:26
Alignment explanation
Indices: 24670--24722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24660 CCAGCCTGAT
* *
24670 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24696 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24722 C
1 C
24723 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27360 original size:26 final size:26
Alignment explanation
Indices: 27324--27376 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27314 CCAATCCGAT
*
27324 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCTATATG
*
27350 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAACGAACTCTATATG
27376 C
1 C
27377 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTATATG
Found at i:29143 original size:26 final size:26
Alignment explanation
Indices: 29105--29157 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29095 CTGGTCTGAT
*
29105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29131 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29157 C
1 C
29158 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30024 original size:26 final size:26
Alignment explanation
Indices: 29995--30047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29985 CCGGTTCGAT
* *
29995 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30021 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
30047 C
1 C
30048 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:30764 original size:26 final size:26
Alignment explanation
Indices: 30726--30778 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30716 CCGGTTCGAT
*
30726 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
*
30752 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
30778 C
1 C
30779 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:30778 original size:731 final size:731
Alignment explanation
Indices: 29367--30849 Score: 2709
Period size: 731 Copynumber: 2.0 Consensus size: 731
29357 ATTAGAGAGA
* *
29367 CGGGATACGTAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
29432 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTATGCCTTCACGTGAAGTT
29497 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTT
*
29562 TTAAAATTTTTTGGAAGGAGTTTTGACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGG
196 TTAAAATTTTTTGGAAGGACTTTTGACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGG
* * *
29627 CATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGT
261 CAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
29692 GTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCGAATGCTCTTTAA
326 GTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCAAATGCTCTTTAA
29757 GGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
391 GGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
29822 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGT
456 CAATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGT
*
29887 CAGGTTCTCCGGCGATGCCCCGACAATTGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGC
521 CAGGTTCTCCGGCGATGCCCCGACAATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* *
29952 CTGAGCCAAGCATGTGCTGCTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCGG
586 CTGAGCCAAGCATGTGCTACTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCAG
30017 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
651 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
30082 CAGCCAGCCAGAGGGG
716 CAGCCAGCCAGAGGGG
30098 CGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
1 CGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
30163 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTATGGCTTCACGTGAAGTT
66 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTATGCCTTCACGTGAAGTT
*
30228 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTT
131 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTT
*
30293 TTAAAATTTTTTTGGAAGGACTTTTCGA-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
196 TTAAAA-TTTTTTGGAAGGACTTTT-GACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTT
*
30357 GGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
259 GGCAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
30422 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTT
324 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCAAATGCTCTTT
*
30486 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
389 AAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
30551 ACCAATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCG
454 ACCAATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCG
* *
30616 GTCAGGTTCTCCGGTGATGCCCCGACGATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
519 GTCAGGTTCTCCGGCGATGCCCCGACAATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*
30681 GCCTGAGCCAAGCATGTGCTACTGCAACACTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTC
584 GCCTGAGCCAAGCATGTGCTACTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTC
30746 AGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTG
649 AGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTG
30811 CTCAGCCAGCCAGAGGGG
714 CTCAGCCAGCCAGAGGGG
* *
30829 CGGGATGCACAAGCCGGGGAT
1 CGGGATGCGCAAGCCGTGGAT
30850 CGATCGGATC
Statistics
Matches: 725, Mismatches: 25, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
731 561 0.77
732 162 0.22
733 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (731 bp):
CGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTATGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTGGGATTTT
TTAAAATTTTTTGGAAGGACTTTTGACCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGG
CAAGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCAAATGCTCTTTAA
GGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CAATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGT
CAGGTTCTCCGGCGATGCCCCGACAATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CTGAGCCAAGCATGTGCTACTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCAG
TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCT
CAGCCAGCCAGAGGGG
Found at i:31650 original size:26 final size:26
Alignment explanation
Indices: 31621--31673 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31611 CTAGTCCGAT
31621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31673 C
1 C
31674 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32531 original size:902 final size:895
Alignment explanation
Indices: 30024--32548 Score: 3773
Period size: 895 Copynumber: 2.8 Consensus size: 895
30014 CGGTATGCTT
* * * *
30024 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GTGC-GG-GTG--CT-C
1 AGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCACTAC
* * * * * *
30083 AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACA
65 ATCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*** * *
30148 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTATG
129 TCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
30213 GCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT
194 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* *
30278 ACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGACCCAAACTTGGTAGACGTGATC
259 ACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGCCCCAAACTTGGTAGACATGATC
* *
30343 CTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
324 CTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
30408 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
30472 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
30537 GGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAG
519 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAA
* ** * * *
30602 CCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCCCCGACGAT-TGTGCCCCGACGAAGAAAAAT
584 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGT-TGCCCCGGCGAAGAAAAAA
* * * * * * * *
30666 GCGGCACCAGCACATGCCTGAGCCAAGCATGTGCTACTGCAACACTCGGTCCGGTTCGATCTTAG
648 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCCGATCTTAG
* **
30731 ACTGGGAATGAACTCAGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
713 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* ** *
30796 ACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGATCC
778 ACGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCC
*
30861 CCCTCTACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
843 CCCTATACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
* **
30914 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTATG
1 AGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACA
* * *
30979 TTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATC
66 TCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
31044 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
31109 TTCACGTGAAGTTTAATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAT
196 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * *
31174 GATTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA-AGTGATCC
261 GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGCCCCAAACTTGGTAGACA-TGATCC
** * *
31238 TTGTACCTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAA
325 TTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
31303 CCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
390 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
31368 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTCTGATGAGGGATAGGGGGCCAATATAAAG
455 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
31433 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCGG-CCCCCCGATCGTCGGGA
520 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAA
* * * * *
31497 CCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCTGGTGAAGAAAAATA
584 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGTTGCCCCGGCGAAGAAAAA-A
* * * *
31562 -CGACACCAGCACATGCCCGAGCCCAGGATGTGCTGCTGCAATCCTTAGTCTAGTCCGATCTTAG
648 GCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCCGATCTTAG
* *
31626 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAA
713 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* * **
31691 ACGAGCTTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCAGATCC
778 ACGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCC
* * * *
31756 CCCTATGCGTGCTACCGATCCTGCTCTCACAACCCTCAGTCC-GATCTGATCTT
843 CCCTATACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAG-TCTGATCTC
* *
31809 AGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCAGACGGGCGGGCGGGCGG
1 AGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C-GA---GCAGGCGGGCGG
*
31874 GCACTACATCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
58 GCACTACATCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
31939 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
123 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
32004 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTCAAAA
188 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * *
32069 CTTTTTGCGGTTCGGAATTTTTTAAAATTTTTTTGGATGGAGTTTTCGCCCCAAACTTGGTAGAC
253 CTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGCCCCAAACTTGGTAGAC
* *
32134 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCACCTAAAAA-TCGAAGTGTACAAGAT
318 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGAT
* **
32198 TTTTTGACCATTTGAAAATGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
383 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
32263 TAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAA
448 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
32328 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCTGGCCCCCCCGATCG
513 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
* *
32393 TCGGAACCCCAATGCCG-CAGGTTAGGTTCTCCGGCGATGCTTTGGCGATGTTGCCCCGGCGAAG
578 TCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTTCGGCGATGTTGCCCCGGCGAAG
* * **
32457 AAAAAAGTGACACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTTGGTCTGGTCCGA
642 AAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCCGA
32522 TCTTAGACTGGGAATGAACTCCGTATG
707 TCTTAGACTGGGAATGAACTCCGTATG
32549 GCTAAGCCAA
Statistics
Matches: 1467, Mismatches: 144, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
890 45 0.03
891 3 0.00
892 2 0.00
894 357 0.24
895 420 0.29
896 4 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 2 0.00
901 5 0.00
902 329 0.22
903 295 0.20
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
AGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACA
TCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACC
CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGTTGCCCCGGCGAAGAAAAAAGCG
ACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
AGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCCCCC
TATACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
Found at i:33230 original size:709 final size:713
Alignment explanation
Indices: 31783--33258 Score: 2184
Period size: 709 Copynumber: 2.1 Consensus size: 713
31773 ATCCTGCTCT
* * *
31783 CACAACCCTC-AGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGAC
1 CACAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--AC
* * * * *
31847 GAAACAAGCAGACGGGCGGGCGGGCGGGCACTACATCGACCAGAGAGATGGGATGCGCAAGCCGT
63 -AAAC-AGCAAACGAGCGGGCGGACGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGT
**
31912 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
126 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
31977 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATC
191 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGACGAATC
* * *
32042 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGAATTTTTTAAAATTTTTTTGGAT
256 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAA
* *
32107 GGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTT
321 GGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTT
* *
32172 CACCTAAAAATCGAAGTGTACAAGATTTTTTGACCATTTGAAAATGGTGTCCCCATTTCAGACAC
386 CACCTAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACAC
*
32237 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCG
451 TTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCG
* *
32302 AGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
516 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTG
** * * * *
32367 TGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCAGGTTAGGTTCTCCGGCGATG
581 CACACACCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATG
* * * *
32432 CTTTGGCGATGTTGCCCCGGCGAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGTATGTGC
646 CTTCGACGATGGTGCCCCGGCGAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCATGTGC
32497 TGC
711 TGC
* * * *
32500 CACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAAC-C-AA
1 CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACAAA
* * *
32563 C-G-AAACGAGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATC
66 CAGCAAACGAGCGGGCGGACGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
32626 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* *
32691 TTGTAAATTCATACAATGGTCCCTTAAGCCATCTCGTCAAGTTTCATGGCAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGACGAATCGTTTT
* ** * *
32756 CTATTTTTCATGATTTTTGAAACTTTTTACGTTTCAGG-ATTTTTTAAAATTTTTTCGGAAGGAT
261 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GGAATTTTTTAAAATTTTTTCGGAAGGAG
*
32820 TTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACA-TTCAG
325 TTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTTCAC
32884 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AGTGTCCCCATTTCAGACACTT
389 CTAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTT
* * * *
32948 TAATGGCGACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTGGAG
453 TAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCGAG
** *
33012 GTTTGATGAGGGATAGGGGGCCCGTATAAGGGCCAAGTACCAACACCCATCCCACATCATGTGCA
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCA
* *
33077 CACACCCTCCCGACCCCCCCGATCATCGGAACCCCAATGCTGCCA-GTCAGGTTCTCTGGCGATG
583 CACACCC-CCCGACCCCCCCGATCATCGGAACCCCAATGCCG-CAGGTCAGGTTCTCCGGCGATG
* * * *
33141 CTTCGACGATGGTGCCCTGGTGAAG-AAAAA-TGCAGGACTAGCACATGCCCGAGCCCAGCATGT
646 CTTCGACGATGGTGCCCCGGCGAAGAAAAAAGTG-A-CACCAGCACATGCCCGAGCCCAGCATGT
33204 GCTGC
709 GCTGC
** *
33209 TGCAACCCTCGATCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGC
1 CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
33259 TTAGACTGGG
Statistics
Matches: 683, Mismatches: 68, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
707 2 0.00
708 84 0.12
709 502 0.73
710 39 0.06
712 3 0.00
714 1 0.00
717 52 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (713 bp):
CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACAAA
CAGCAAACGAGCGGGCGGACGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTCAAGTTTCATGGCAAGACGAATCGTTTT
CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGGAAGGAGT
TTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCACCT
AAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAA
TGGCGACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCACAC
ACCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTTCG
ACGATGGTGCCCCGGCGAAGAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGC
Found at i:34159 original size:26 final size:26
Alignment explanation
Indices: 34121--34173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34111 CTGGTTCGAT
* *
34121 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34147 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34173 C
1 C
34174 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35050 original size:26 final size:26
Alignment explanation
Indices: 35021--35073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35011 CCGGTCTGAT
*
35021 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35047 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35073 C
1 C
35074 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35570 original size:904 final size:895
Alignment explanation
Indices: 32502--35940 Score: 4919
Period size: 889 Copynumber: 3.8 Consensus size: 895
32492 TGTGCTGCCA
* * *
32502 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCAACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* *
32567 ACGAGC-GGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAG
66 ACGAGCGGGGCGGACAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
32631 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * *
32696 AATTCATACAATGGTCCCTTAAGCCATCTCGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
32761 TTTCATGATTTTTGAAACTTTTTACGTTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTAG
261 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
32826 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAA
326 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
32891 CTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGC
391 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
32955 GACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTGGAGGTTTGATG
456 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
** * * *
33020 AGGGATAGGGGGCCCGTATAAGGGCCAAGTACCAACACCCATCCCACATCATGTGCACACACCCT
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-
** * *
33085 CCCGACCCCCCCGATCATCGGAACCCCAATG-CTGCCAGTCAGGTTCTCTGGCGATGCTTCGACG
585 CCCGACCCCCCCGATCGCCGGAACCCCAATGTC-GCCAGTCAGGTTCTCTGGCGATGCTCCAACG
* *
33149 ATGGTGCCCTGGTGAAGAAAAATGCAGG-ACTAGCACATGCCCGAGCCCAGCATGTGCTG-CTGC
649 ATGGTGCCC-CGTGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGC
* * *
33212 AACCCTCGATCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
712 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
33277 CTGTTTGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATG
777 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * * *
33342 CGTAACCCGGGGATTGGCTGGGTCCCCCTCTGCGTGTTGCCGATCTTGTTGTCG
842 CGTAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGTCG
* * * *
33396 CAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAATGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* * * *
33461 ACAAGC-GGG-TG--A-GCACTTCGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAG
66 ACGAGCGGGGCGGACAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
33521 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
131 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
33586 AATTCATAAAATGGTCCTTTAAGCCTTCACATGAA-TTTCATGGCAAGACGACTCATTTTCTATT
196 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
33650 TTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTT-AGGAAGGCA-TTTT
261 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA-GAAGG-AGTTTT
* * *** *
33713 GGCCTCAAACTTAGTAGGTGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
324 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAA
* *
33778 AACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
389 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
33843 GCTACTGGCAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTG
454 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTG
33908 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
518 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * * * *
33972 CCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCCCCGAC
583 CCCCCGACCCCCCCGATCGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCAAC
* * * * *
34037 GATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGCATGTGCT-ACTGC
648 GATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGC
* * * *
34101 AACACTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTAGGAATGAAC
712 AACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
34165 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGAT
776 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* ** *
34230 GCGCAAGCCGAGGATTGATCGGGTCCCACTCTACGTGCTGTCGATCCTGTTG-CTG
841 GCGTAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGTC-G
* * *
34285 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* * * * *
34350 ACGAGCAGGCGAGCGGGC-GTGTAGTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTAGATCG
66 ACGAGC-GG-G-GCGGACAG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
34414 ATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCT
127 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
34479 TGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTC
192 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
34544 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGGTTTTTGAAAATTTTTTC-GAAAGGAGT
257 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGT
* *
34608 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCA
321 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT
** *
34673 AAAAACTCGAAGTGTACAAGATTTTGTCTCCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTA
386 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
34738 ATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTTAGTTCTCGAGGT
451 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGT
*
34803 TTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCA
515 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
34868 CACCCCCCCGACCCCCCAGATCAG-CGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCT
580 CA-CCCCCCGACCCCCCCGATC-GCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCT
* * *
34932 CCAATGATGGTGCCCCGTCGAAGAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGTATGTGCTG
643 CCAACGATGGTGCCCCGT-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
34997 TC-GTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
707 TCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * ** *
35061 GAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCGCCCAATCGGCCAGAGAGGCG
772 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
35126 GGATGCGTAAGTCGAGGATCGGCCGGGCCCCCCTCTACATGCTGTCGATCCTGCTGTCG
837 GGATGCGTAAGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGTCG
* * *
35185 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* * *
35250 ACGAGCGGGTGGGTAGGCGGACAGGCACTACGCCGTCTAGAGAGACGGCATGCGCAAGCCGTGGA
66 ACGAGC-----GG--GGCGGACAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * * *
35315 TCCATAGGGTCGTACGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATGCCATTTTTATG
124 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
35380 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
189 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
35445 TTCTATTTTTCATGATTTTTCAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
254 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
35510 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
319 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
* * *
35575 GTAAAAATTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
384 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
35640 TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
449 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAG
* *
35705 GTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCG
513 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
35770 CACACCCCCCGGCCCCCACCGATCGCCGGAA-CCCAA-GT-GCC-G-CCGG---TC-GG-GCT-C
578 CACACCCCCCGACCCCC-CCGATCGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGC
* * * * *
35824 TCCAGCGATGGTGCCCCGGTGAAGAAAAATACAGAACTAGCACATGCCCGAGCCCAGCATGTGCT
642 TCCAACGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
35889 GTC-GCAACCCTCAGCCCAGTCTGATCTTAGACTGGGAATGAACTCCGCATGC
706 GTCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
35941 CTAAGACAAC
Statistics
Matches: 2279, Mismatches: 224, Indels: 85
0.88 0.09 0.03
Matches are distributed among these distances:
888 4 0.00
889 493 0.22
890 213 0.09
891 80 0.04
892 1 0.00
893 103 0.05
894 73 0.03
895 2 0.00
896 2 0.00
897 138 0.06
898 318 0.14
899 7 0.00
900 335 0.15
901 7 0.00
902 2 0.00
903 20 0.01
904 478 0.21
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
ACGAGCGGGGCGGACAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGACCCCCCCGATCGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCAACGAT
GGTGCCCCGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACC
CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTA
AGCCGAGGATTGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGTCG
Done.