Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168058.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 36307
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:13170 original size:19 final size:20

Alignment explanation


    Indices: 13146--13185  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 20

      13136 AAGTCACCAT

                                
      13146 AGCCTAAGGGTAAGAG-TTG
          1 AGCCTAAGGGTAAGAGCTTG

                  *             
      13165 AGCCTAGGGGTAAGAGCTTG
          1 AGCCTAAGGGTAAGAGCTTG

             
      13185 A
          1 A

      13186 ATGGGAGAGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   15  0.79
  20    4  0.21

ACGTcount: A:0.30, C:0.12, G:0.38, T:0.20


Consensus pattern (20 bp):   
AGCCTAAGGGTAAGAGCTTG

Found at i:22818 original size:45 final size:45

Alignment explanation


    Indices: 22767--22870  Score: 109
    Period size: 45  Copynumber: 2.3  Consensus size: 45

      22757 CATTATCGAG

                       *    *     * *              *     
      22767 GGCACTTACCTTAACCGCCATTGGGACAAGCTAGCCCTTGGTATA
          1 GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

                   **                   *             *  
      22812 GGCACTTGTCTCAACCACCATTAGCACATGCTAGCCCTTAGTGTA
          1 GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

                 * *      
      22857 GGCACATGCCTCAA
          1 GGCACTTACCTCAA

      22871 TCAACATTGG


Statistics
Matches: 48,  Mismatches: 11, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  45   48  1.00

ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24


Consensus pattern (45 bp):   
GGCACTTACCTCAACCACCATTAGCACAAGCTAGCCCTTAGTATA

Found at i:23002 original size:45 final size:45

Alignment explanation


    Indices: 22908--23018  Score: 116
    Period size: 45  Copynumber: 2.5  Consensus size: 45

      22898 TATGGGTAGT

                                                   *    *
      22908 TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAGGCACT
          1 TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAAGCACA

                  *      *                 *   **     *   
      22953 TACCTTGAACACCTTTGGCACATGCTAGG-CTTTGGTGCAAGTACA
          1 TACCTTAAACACCATTGGCACATGCT-GGCCCTTGCAGCAAGCACA

                    *     *      
      22998 TACCTTAACCACCACTGGCAC
          1 TACCTTAAACACCATTGGCAC

      23019 CTGTAGACCC


Statistics
Matches: 53,  Mismatches: 12, Indels: 2
        0.79            0.18        0.03

Matches are distributed among these distances:
  45   51  0.96
  46    2  0.04

ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24


Consensus pattern (45 bp):   
TACCTTAAACACCATTGGCACATGCTGGCCCTTGCAGCAAGCACA
Done.