Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 10 of 129
Found at i:1580441 original size:94 final size:94
Alignment explanation
Indices: 1580280--1580468 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
1580270 GCATACGGAG
*
1580280 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGTAAAG
1 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGCAAAG
1580345 GGGGACCCGGCCGATCCCCGGCTAGCGCA
66 GGGGACCCGGCCGATCCCCGGCTAGCGCA
1580374 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGCAAAG
1 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGCAAAG
1580439 GGGGACCCGGCCGATCCCCGGCTAGCGCA
66 GGGGACCCGGCCGATCCCCGGCTAGCGCA
1580468 T
1 T
1580469 CTCGCCCCTC
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.25, C:0.27, G:0.29, T:0.19
Consensus pattern (94 bp):
TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGCAAAG
GGGGACCCGGCCGATCCCCGGCTAGCGCA
Found at i:1580575 original size:26 final size:26
Alignment explanation
Indices: 1580523--1580575 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
1580513 GTTGACTTGG
* * * * *
1580523 GCATACGGGGTTTATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1580549 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1580575 G
1 G
1580576 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1581313 original size:997 final size:989
Alignment explanation
Indices: 1579376--1582411 Score: 3391
Period size: 997 Copynumber: 3.0 Consensus size: 989
1579366 GTATACGGAG
* * * * * * * ** *
1579376 TTCATTCCCAGTCTAAGATCGGACCAGAGCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAG
1 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCTACAGCATGCAAAG
* * * * * *
1579441 GGGGACCCGACCGATCCCCGGCTTGCGCGTCCTGCTCTTCTGGCCGGCTGAGCGCCCGCACGCTC
66 GGGGACCCGGCCGATCCCCGGCTAGCGCATCC-GCCCCTCTAGCCGGCTGAGCGCCCGCAC-CT-
* * *
1579506 GTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
128 TTTTCG-TGGTTGACTTGGGCATACGAAGTTTATTCCTAGT-TAAGCATACGGAGTTCATTCCCA
* * ** * * * *
1579571 GTCTAAGATCGAACCGGACTGAGGGTTGCGACAGCACAAGCTGGGCTCGGGCATATGTTGGTGCT
191 GTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
1579636 ACATTTTTCTTCGTCGAGGCACCATTGTCAGAGCATCGTCGGAGTACCTGACCGGCGGCATTGGG
256 ACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* ** * *
1579701 GTTCCAGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGTGTGCTA-GTAGTTG
321 GTTCCGGCAATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGGTACTTG
*
1579765 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-CGCCCTTTAAAGAGCATT
384 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC-CCCCTTAAAGAGCATT
* *
1579829 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAA
448 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAA
* * *
1579894 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATA
512 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATA
* * *
1579959 CAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAATCCCGAA
577 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
1580024 CCGTAAAAAGTTTCAAAAATAGTGAAAAATAGGAAACGAGTCCTCTTGCCATGAAACTTCACGTG
642 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
1580089 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
707 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
1580154 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
772 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
1580219 TACGTAGTACCCT-CCCGCCCGTGCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
837 GATGTAGT--GCTGCCCGCCCGTACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * *
1580283 ATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGTAAAGGGG
900 ATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGCAAGATC-ACAGCACGTAAAGGGG
* *
1580348 GACCCGGCCGATCCCCGGCTAGCGCA
964 GACCCGACCGATCCCCGGCTTGCGCA
*
1580374 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCTACAGCATGCAAAG
1 TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCTACAGCATGCAAAG
1580439 GGGGACCCGGCCGATCCCCGGCTAGCGCATCTCGCCCCTCTAGCCGGCTGAGCGCCCGCACACTT
66 GGGGACCCGGCCGATCCCCGGCTAGCGCATC-CGCCCCTCTAGCCGGCTGAGCGCCCGCAC-CTT
**
1580504 ATTTCGTGGGTTGACTTGGGCATACGGGGTTTATTCCTAGTGTAAGCATACGGAGTTCATTCCCA
129 -TTTCGT-GGTTGACTTGGGCATACGAAGTTTATTCCTAGT-TAAGCATACGGAGTTCATTCCCA
* * *
1580569 ATCTAAGATCGGACTGGACTGAGGGTTTCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC
191 GTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** *
1580634 GCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGG
256 ACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
*
1580699 GTTCCGGCAATCGGCGGGGCCGGGGGGTGTGCGCAGATGATGTGTGATGGGTG-TAGGTACTTGG
321 GTTCCGGCAATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGGTACTTGG
** *
1580763 CCCTTATATTGGTGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
385 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
1580828 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTGTTTCAAATG
450 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT-TTTCAAATG
* * * *
1580893 GTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATAGA
514 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACA
* **
1580958 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACC
579 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * *
1581023 GCAAAAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
644 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
*
1581088 GGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
709 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
1581153 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
774 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
1581218 TGTAGTGCTTGCCCGCCCGTTCGCCCGCTCTTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
839 TGTAGTGC-TGCCCGCCCGTACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * *
1581283 CCTAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAAGATCGATAACACGTAGAGGGGGAC
903 CCTAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGCAAGATC-ACAGCACGTAAAGGGGGAC
* * *
1581348 CCGATCGATCCCCGACTTGCACA
967 CCGACCGATCCCCGGCTTGCGCA
* *** * ** * * * * *
1581371 TCCCGCCCCT-CTACTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGGATACCGA
1 T-TCATTCCTAAT-CTAAGATCAG-ACCAG-A--C-CG----A-GGGTTG---T--GG-TAAC-A
* * ** * ***
1581435 GTTTAT-TCCCAGTCTAAGATCCGACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCAC-GCA
47 G--GATCT-ACAG-C----AT--G--C--AAAGGGGGACCCGGC--C--GATC--C--C-CGGC-
* * * * * ** *
1581498 GAGAGGGACCCGGTCGATCCTTGGCTTGCGCATCCCGCCCTTTTGGCTGGCTGAACGCCCGCACG
88 TAG-CGCATCC-GCCCCT-C-T---------A----G--C------C-GGCTGAGCGCCCGCAC-
* * * *
1581563 CTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
126 CT-TTTTCGT-GGTTGACTTGGGCATACGA-AGTTTATTCCTAGT-TAAGCATACGGAGTTCATT
** * * *
1581627 CTTAGTCTAAGATCGGACCGGAC-CATGGGTTGCGGTAGCTCATGCTGGGCTCGGGCATGTGCTG
187 CCCAGTCTAAGATCGGACTGGACTGA-GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
1581691 GTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACTTGACCGGCGACA
251 GTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* *
1581756 TTGGGG---CGGCCAA----------GGGGGGTGTGTGCACATGATGTGCGATGGGTGCT-GGTA
316 TTGGGGTTCCGG-CAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGGTA
* *
1581807 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGT
380 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* * *
1581872 ATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGCGTTTGAAATGGGGACACTTTTTCA
445 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTCA
* * * *
1581937 AATGGTCACAAAATCTTGTAGACCTT-GAGTTTCTAGCTGAAATTTTTTGTGCACGCCAAAAAAA
510 AATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAA
* * *
1582001 ATACAAGGATCACATCTACCAAGTTCGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC
574 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
1582066 AAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCCTGAAACTTCAC
639 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
* ***
1582131 GTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
704 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
1582196 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
769 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
1582261 GCCGATGCA--G-TGCCCG--C--ACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTA
834 GCCGATGTAGTGCTGCCCGCCCGTACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
1582319 CATTCCCAGTCTAAGATCAGACTTGACCG-GCAGTTGTGGTAGTAAAATCAGCAGCACGCAAAGG
899 CATTCCTAGTCTAAGATCAGACTAGACCGAG-GGTTGTGGTAGCAAGATCA-CAGCACGTAAAGG
* *
1582383 GGGACTCGACCGATCCCCAGCTTGCGCA
962 GGGACCCGACCGATCCCCGGCTTGCGCA
1582411 T
1 T
1582412 CCCGCCCCTC
Statistics
Matches: 1739, Mismatches: 213, Indels: 130
0.84 0.10 0.06
Matches are distributed among these distances:
995 1 0.00
996 5 0.00
997 590 0.34
998 301 0.17
999 4 0.00
1000 1 0.00
1002 1 0.00
1003 2 0.00
1007 1 0.00
1008 6 0.00
1011 1 0.00
1013 2 0.00
1014 3 0.00
1015 2 0.00
1016 1 0.00
1017 5 0.00
1018 1 0.00
1022 2 0.00
1024 127 0.07
1025 128 0.07
1026 91 0.05
1027 31 0.02
1028 41 0.02
1029 43 0.02
1030 66 0.04
1031 76 0.04
1032 99 0.06
1033 65 0.04
1034 53 0.03
1035 44 0.03
1036 49 0.03
1037 42 0.02
1038 57 0.03
1039 43 0.02
1040 501 0.29
1041 69 0.04
1042 49 0.03
1043 32 0.02
1044 30 0.02
1045 15 0.01
1046 33 0.02
1047 45 0.03
1048 559 0.32
1049 193 0.11
1050 20 0.01
1051 16 0.01
1052 25 0.01
1053 31 0.02
1054 29 0.02
1055 46 0.03
1056 59 0.03
1057 27 0.02
1058 30 0.02
1059 21 0.01
1060 29 0.02
1061 100 0.06
1062 204 0.12
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (989 bp):
TTCATTCCTAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCTACAGCATGCAAAG
GGGGACCCGGCCGATCCCCGGCTAGCGCATCCGCCCCTCTAGCCGGCTGAGCGCCCGCACCTTTT
TCGTGGTTGACTTGGGCATACGAAGTTTATTCCTAGTTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
TTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
GGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTG
CTGCCCGCCCGTACGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
AAGATCAGACTAGACCGAGGGTTGTGGTAGCAAGATCACAGCACGTAAAGGGGGACCCGACCGAT
CCCCGGCTTGCGCA
Found at i:1581532 original size:159 final size:159
Alignment explanation
Indices: 1581243--1581611 Score: 479
Period size: 159 Copynumber: 2.3 Consensus size: 159
1581233 CCCGTTCGCC
* * * * * *
1581243 CGCTCTTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * *
1581308 AGGGTTGCAGCAGCAAGATCGATAACACGTAGAGGGGGACCCGATCGATCCCCGACTTGCACATC
66 AGGGTTGCAGCAGCAAGATCGACAACACGCAGAGAGGGACCCGATCGATCCCCGACTTGCACATC
* *
1581373 CCGCCCCTCT-ACTCGGCTGAGCGCCCGTA
131 CCGCCCCTCTGACT-GGCTGAACGCCCGCA
* * * *
1581402 CGCTCGTTTCATGGGTTGACTTAGGGATACCGAGTTTATTCCCAGTCTAAGATCCGACCGGACTG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * * ** * *
1581467 AGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGGTCGATCCTTGGCTTGCGCATC
66 AGGGTTGCAGCAGCAAGATCGACAACACGCAGAGAGGGACCCGATCGATCCCCGACTTGCACATC
* * *
1581532 CCGCCCTTTTGGCTGGCTGAACGCCCGCA
131 CCGCCCCTCTGACTGGCTGAACGCCCGCA
*
1581561 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1581612 CATACGGAGT
Statistics
Matches: 180, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
159 178 0.99
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
AGGGTTGCAGCAGCAAGATCGACAACACGCAGAGAGGGACCCGATCGATCCCCGACTTGCACATC
CCGCCCCTCTGACTGGCTGAACGCCCGCA
Found at i:1581621 original size:26 final size:26
Alignment explanation
Indices: 1581585--1581637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1581575 GTTGACTTAG
1581585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
1581611 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1581637 G
1 G
1581638 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1582508 original size:26 final size:26
Alignment explanation
Indices: 1582469--1582518 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1582459 GACTTAGGCA
*
1582469 TACGAAGTTCATTCCCAGTCTAAGCT
1 TACGAAGTTAATTCCCAGTCTAAGCT
*
1582495 TACGGAGTTAATTCCCAGTCTAAG
1 TACGAAGTTAATTCCCAGTCTAAG
1582519 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTAATTCCCAGTCTAAGCT
Found at i:1583117 original size:895 final size:886
Alignment explanation
Indices: 1581402--1584291 Score: 3480
Period size: 863 Copynumber: 3.3 Consensus size: 886
1581392 AGCGCCCGTA
* * * * * * *
1581402 CGCTCGTTTCATGGGTTGACTTAGGGATACCGAGTTTATTCCCAGTCTAAGATCCGACCGGACTG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * ** *
1581467 AGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGAGGGACCCGGTCGATCCTTGGCTTGCGCATC
66 AGGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATC
* * *
1581532 CCGCCCTTTTGGCTGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
131 CCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
**
1581597 CATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGACCGGACC-ATGGGTTGCG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGGTTGCG
* * * *
1581661 GTAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCG
260 ATAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCAGGGCACCATC--C-
* * * **
1581726 GAGCATCGCCAGAGAACTTGACCGGCGACATTGGGG--C-GGC---C-------AAGGGGGGTGT
321 GAGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGT
*
1581778 GTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
385 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
1581843 GCTTGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATT
450 -CCTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
1581908 AAAGCGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAGACCTTGAGTTTCTA
514 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTGAGTTTTTA
* * *
1581972 GCTGAAATTTTTTGTGCACGCCAAAAAAAATACAAGGATCACATCTACCAAGTTCGGGGCCAAAA
578 GCTG-AATTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
1582037 CTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGA
641 CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
1582102 AAACGAGTCATCTTGCCCTGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAG
706 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
1582167 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
771 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
1582232 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGCAGTGCCCGCACGCC
836 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCACGCC
* * **
1582283 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCAGACTTGACCG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * * * * * *
1582348 -GCAGTTGTGGTAGTAAAATCAGCAGCACGCAAAGGGGGACTCGACCGATCCCCAGCTTGCGCAT
66 AG-GGTTGCGGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCAT
* * *
1582412 CCCGCCCCTCTGGCTGGCTGAGTGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAG
130 CCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AG
* *
1582476 TTCATTCCCAGTCTAAGCTTACGGAGTTAATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * *
1582541 GATAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTCTCTTCGCTGCGGCACCATCACC
259 GATAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAG-GGCACCAT--CC
1582606 GAAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTG
321 G-AGCATC-CCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTG
* *
1582671 TGCGCACATGATGTGCGATGGGTACTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAA
384 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
1582736 ACCTCATGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCAT
449 ACCTCA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
1582801 TAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
513 TAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTT
* * * * * * *
1582866 AGCTGATTTTTTTCTTGCGTACCAACAAAAATACAAGGATCATGTGTACCACGTTTGGGGCCAAA
577 AGCTGAATTTTTT-GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** **
1582931 ACTCCTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATTTTGAAAAATAG
640 ACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1582996 AAAACGAGTTGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
705 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
** *
1583061 GCCATAAAAATTTCATTGGCACATAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATC
770 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1583126 GATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGACGTAACGCCCGCCCTCCTACCCGCC
835 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG-AA-G--TGCCC-GC-A--CGCC
* * * * * * *
1583186 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAATATTGGACCAGACTG
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
** * * * * * * *
1583251 AGGGTTGCAACAGTAGGATCGACAGCACGTAAAGGGGGACCCGGTTGATCCCCGGCTTATGCATC
66 AGGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATC
* * ** * * *
1583316 CCGTCCCTTTGGCTGATTGAGCGCCCGCACGCTCGTTTCGGGGGTTGACTTAGGCATACGGTGTT
131 CCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
* * * *
1583381 CATTCCCA----AA-C-TA---AG---------A-TC--AGATC-GA----ACTGGGGGTTTCAA
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* ** *
1583420 CAGCTCATGCTATGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCAT-C--G-
261 TAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGCACCATCCGAGC
* * * *
1583481 -T--CGGAGAACCTGATCGGCAGCATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGGTGAGCG
325 ATCCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGCC-GGGGGGTGTGCG
1583542 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
388 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
1583607 CGAGAACTCACA--CCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
453 C-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
1583670 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
517 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCT
* * ***
1583735 AAATTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTATCAAGTTTGGAAACAAAACTCCT
581 GAATTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* **
1583800 TCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
646 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
1583865 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACATGCCATA
711 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
***
1583930 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
776 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
1583995 TGGCTTACGCGTCCCGTCTCTCTGGCCTACGTAGTGCACGTCCGTC-CGCCC
841 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTG--C--CCG-CACG-CC
* * * *
1584046 AATCGCCCGTTTCATCAGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
1 ---CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * *
1584111 CCGAGGGTTGGGGCAGCAGGATCGGTAGCACGC-AGGGGGGAACCCGATCGATCCCCGGCTTACG
63 CCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGGGGG-ACCCGATCGATCCCCGGCTTACG
* ** * *
1584175 TAT-CCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTAAGGCATACAG
127 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * *
1584239 AGTTCATTTCTAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACC
192 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
1584292 AGATCAAAGG
Statistics
Matches: 1710, Mismatches: 225, Indels: 143
0.82 0.11 0.07
Matches are distributed among these distances:
859 3 0.00
860 2 0.00
861 2 0.00
862 67 0.04
863 345 0.20
864 8 0.00
865 116 0.07
866 46 0.03
867 85 0.05
868 3 0.00
869 1 0.00
871 3 0.00
874 1 0.00
877 57 0.03
878 2 0.00
880 6 0.00
881 304 0.18
882 6 0.00
883 7 0.00
884 7 0.00
885 1 0.00
887 1 0.00
893 3 0.00
894 158 0.09
895 294 0.17
896 1 0.00
897 3 0.00
898 1 0.00
899 6 0.00
900 1 0.00
901 1 0.00
903 167 0.10
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCATC
CCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
TAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGCACCATCCGAGCA
TCCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATT
TTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCACGCC
Found at i:1584281 original size:26 final size:26
Alignment explanation
Indices: 1584226--1584283 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
1584216 CATGGGTTGA
* * *
1584226 CTAAGGCATACAGAGTTCATTTCTAGT
1 CTAA-GCATACAGAGTTCATTCCCACT
*
1584253 CTAAGCATACGGAGTTCATTCCCACT
1 CTAAGCATACAGAGTTCATTCCCACT
1584279 CTAAG
1 CTAAG
1584284 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCACT
Found at i:1584443 original size:185 final size:182
Alignment explanation
Indices: 1584074--1584656 Score: 682
Period size: 185 Copynumber: 3.2 Consensus size: 182
1584064 TTGGCTTAGC
** * * * *
1584074 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGGGGCAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGTTGCGACAGCAGGATCGGTAG
** * *
1584139 CACGCAGGGGGGAACCCGATCGATCCCCGGCTTACGTATCCGCCCCTCTGGCCAGCTGAGCGCCC
65 CACGCAAAGGGG-ACCCGATCGATCCCCGGCTTACGTATCCACCCCTCTGGCCAGTTGAGCGCCC
* * * *
1584204 GCACGCTCGTTTCATGGGTTGACTAAGGCATACAGAGTTCATTTCTAGTCTAAG
129 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
1584258 CATACGGAGTTCATTCCCACTCTAAGATCAGACCAGATCAAAGGTTGCGACAGCAGGATCGGTAA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGTTGCGACAGCAGGATCGGTAG
* * * **
1584323 CATGCAAAAGAGGG-CCCGATCGATCCCCGACTTACGCATCCCACCCCTCTGGCTGGTTGAGCGC
65 CACGC-AAAG-GGGACCCGATCGATCCCCGGCTTACGTAT-CCACCCCTCTGGCCAGTTGAGCGC
* * * *
1584387 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAG
127 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * **
1584443 CATACAGAGTTCATTCCCAGTATAAGATCACACTGGATCGAGAGTTACGATAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAG-GTTGCGACAGCAGGATCGGTAG
** * * * *
1584508 CACGCAGGTGGGGACCCGACCGATCCCCGGCTTGCGTATCCAGCCCTTCTGGCCAGTTGAGTGCC
65 CACGCA-AAGGGGACCCGATCGATCCCCGGCTTACGTATCCA-CCCCTCTGGCCAGTTGAGCGCC
* *
1584573 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG
128 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
1584628 CATACGGATTTCATTCCCAGTCTAAGATC
1 CATACGGAGTTCATTCCCAGTCTAAGATC
1584657 GGATCAGACC
Statistics
Matches: 333, Mismatches: 59, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
184 91 0.27
185 239 0.72
186 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (182 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGTTGCGACAGCAGGATCGGTAGC
ACGCAAAGGGGACCCGATCGATCCCCGGCTTACGTATCCACCCCTCTGGCCAGTTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:1584643 original size:26 final size:25
Alignment explanation
Indices: 1584601--1584660 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
1584591 GTTGACTTAG
1584601 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGA-TTTATTCCCAGTCTAA
1584627 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGATTT-ATTCCCAGTCTAA
1584653 G-AT-CGGAT
1 GCATACGGAT
1584661 CAGACCGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 5 0.15
25 5 0.15
26 23 0.70
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (25 bp):
GCATACGGATTTATTCCCAGTCTAA
Found at i:1586400 original size:26 final size:26
Alignment explanation
Indices: 1586364--1586416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1586354 GTTGACTTAG
*
1586364 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1586390 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1586416 G
1 G
1586417 ATCATACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1587253 original size:26 final size:26
Alignment explanation
Indices: 1587223--1587273 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1587213 TGACTTAGGT
*
1587223 ATACGGAGTTCATTACCAGTCTAAGC
1 ATACGGAGTTCATTACCAATCTAAGC
*
1587249 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTACCAATCTAAG
1587274 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTACCAATCTAAGC
Found at i:1587659 original size:888 final size:888
Alignment explanation
Indices: 1585503--1588438 Score: 3741
Period size: 888 Copynumber: 3.3 Consensus size: 888
1585493 GTTGACTTAG
* * * * * *
1585503 GCATTCGGAGTTCATTCCCAGTCTATGATCGAACTAAACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1585568 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-CAGAG-A--ACC--TAA-
65 CTAGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCCGAGAAC
* **
1585626 CTG---A-CTGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
130 CTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGG--GGGGGGTGTGCGCACATGATGTGCGA
* * *
1585687 TGAGTACTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
** **
1585752 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGTAGTAGCTGTTAAAGTGTCTAAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
1585817 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTAGTG
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT-GTG
* *
1585882 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * * *
1585947 TTTTAAAAATCTCC-AACCGTAAAAAGTTTCGAAAATCGTGAAAATTTGAAAAGGAGTCGTCTTG
452 TTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
1586011 CCATGAAACTTCACGTGAAGGCTTAAAGGTCCATTGTATGAATTTATAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * **
1586076 TGGTATGTAGAAATATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGC
581 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA--G-TAACGC
* * * * * * *
1586141 ATCCCGTCTCTTTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGG
643 AT-CCGTCTC--TGGGCGGCATAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGG
* *
1586206 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
705 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
1586271 CACGCAGAGGGGGACCCGA-CTGATCCTC-GACTTGTGCATCCCGTCCCTCTGCCCGACTGAGCG
770 CACGCAGAGGGGGACCCGATC-GATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* *
1586334 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
833 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
1586390 GCATACGGAGTTCATTCTCAGTCTAAGATCATACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1586455 CTCA-GGCATGTGCTGGTGCCGCATTATTCTTCGTTGGGGCACCAT-T----GC--CG--GAGAA
65 CT-AGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCCGAGAA
* * * ** * **
1586510 CCTGACCGGCGGCAATAGGGTTTTGGTGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
129 CCTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGG-GGGGGGGTGTGCGCACATGATGTGCGA
*
1586575 TAGGTGCTGGTA-------C-----TTGG--CCC--T---T-ATCAAACCTCGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
1586620 ACCTTAAAGAGCATTTGAGAATTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
1586685 GGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
* *
1586750 ATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
1586815 TTACAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
453 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
1586880 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
1586945 GCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCATCCTATCGATCCA-TAAC-AAT-C-
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGTAACGCATCCG
* *
1587006 TCTCTGGGCAGCATAGTGCCCGCCCGCCC-ACCTGCTCGTTTCGTCGGTTGGCGTAGGCATACGG
648 TCTCTGGGCGGCATAGTGCCCGCCCGCCCGACC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * ***
1587070 AGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATAAAG
712 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * *
1587135 AGGGGGACCC-AGTCGATCCCC-GACTTGCGCAACCCGCCCCTCTGGCTGGCTGAGCACCCGTAC
777 AGGGGGACCCGA-TCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* *
1587198 GCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTACCAGTCTAA
840 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1587247 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1587312 CTTAGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAG
65 C-TAGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGCC-GAG
* *
1587377 AACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGGGGGGGGTGTGTGCACATGATGTGTG
127 AACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCG
1587442 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1587507 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATTG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
1587572 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
** *
1587637 CATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCATTCCGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** *
1587702 TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
1587767 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * **
1587832 GGCATGCAGAAATATGAAAATGTGCCTAAACCCACCAACCACCCTCTCGATCCA-TGGCTTGTAC
582 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGTAAC--G--C
* * * * *
1587896 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCCGTCCGCCCACTCGTTTCGTCGATTGGCT
643 AT-CCG--TCTCTGGGCGGCATAGTGCCCGCCCGCCCGACCG----CTCGTTTCGTCGGTTGGCT
* * *
1587961 TAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCG
701 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
1588026 GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCCTGCGCATCCGGCCTCTCTGGCCGGCTGAG
766 GCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* *
1588091 CTCCCGCACGCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1588149 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
1588213 C-ACCAGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
65 CTA-GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCG-CCGAG
* * *
1588277 AACCTGATC-GACGGCATTGGGGTTCCGACGATCGAGAGGGCCGGGGGGGTGTGCGCACATGATG
127 AACCTGACCAG-CGGCATTGGGGTTCCGGCGATCG-G-GGG-GGGGGGGGTGTGCGCACATGATG
* * *
1588341 TGCGATGGGTGCTGGTATTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGACCTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1588406 ACACACCCTTAAAGAGCATTTGAGATTTTACAG
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAG
1588439 ATTTTACAGA
Statistics
Matches: 1780, Mismatches: 195, Indels: 132
0.84 0.09 0.06
Matches are distributed among these distances:
856 3 0.00
857 258 0.14
858 40 0.02
859 4 0.00
860 2 0.00
862 2 0.00
863 2 0.00
864 2 0.00
866 4 0.00
867 228 0.13
868 174 0.10
869 37 0.02
872 1 0.00
874 3 0.00
875 1 0.00
876 3 0.00
880 4 0.00
881 1 0.00
882 3 0.00
883 1 0.00
884 3 0.00
885 3 0.00
887 94 0.05
888 411 0.23
889 22 0.01
893 2 0.00
895 1 0.00
898 26 0.01
899 4 0.00
900 82 0.05
901 53 0.03
902 190 0.11
903 116 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TAGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCGCCGAGAACC
TGACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGTAACGCATCCGTCT
CTGGGCGGCATAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1588161 original size:25 final size:26
Alignment explanation
Indices: 1588123--1588174 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
1588113 GCTGACTTAG
1588123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1588149 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1588174 G
1 G
1588175 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1588442 original size:9 final size:9
Alignment explanation
Indices: 1588428--1588460 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
1588418 AGAGCATTTG
1588428 AGATTTTAC
1 AGATTTTAC
1588437 AGATTTTAC
1 AGATTTTAC
1588446 AGATTTTAC
1 AGATTTTAC
1588455 AG-TTTT
1 AGATTTT
1588461 GACAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 20 0.83
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.48
Consensus pattern (9 bp):
AGATTTTAC
Found at i:1590171 original size:24 final size:24
Alignment explanation
Indices: 1590138--1590185 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
1590128 GTTTGGAGCA
1590138 ATCCCCGGCATGCACATCCCGCCC
1 ATCCCCGGCATGCACATCCCGCCC
*
1590162 ATCCCTGGCATGCACATCCCGCCC
1 ATCCCCGGCATGCACATCCCGCCC
1590186 CTCTGGCCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.52, G:0.17, T:0.15
Consensus pattern (24 bp):
ATCCCCGGCATGCACATCCCGCCC
Found at i:1590263 original size:26 final size:26
Alignment explanation
Indices: 1590233--1590285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1590223 GTTGACTTAG
*
1590233 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1590259 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1590285 G
1 G
1590286 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1592939 original size:26 final size:26
Alignment explanation
Indices: 1592903--1592955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1592893 GTTAACTTAG
1592903 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1592929 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1592955 G
1 G
1592956 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1593195 original size:895 final size:893
Alignment explanation
Indices: 1590176--1594478 Score: 5036
Period size: 895 Copynumber: 4.9 Consensus size: 893
1590166 CTGGCATGCA
* * * * *
1590176 CATCCCGCCCCTCTGGCCTGCTGAGCACCCACATGCTCGTTTCATGGGTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
1590241 AGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACCGAGGGT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-A-TGAGGGT
* * * *
1590306 TGCGGTACCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC
129 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * * *
1590371 GTTGGAGCATC-TCGGAGAACCTGACCGATGACATTTGGGTTTCGACGATCCGGGGGGGCCG-GG
194 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCA-TTGGGTTCCGACGAT-CGGGGGGG-CGTGG
1590434 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
256 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
1590499 ATCAAACCTCAAGAACTCACTCCCCTTTAAAAAGCATTTGAGAATTTTACAGGTTTGCTGCCAGT
321 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGT
* * * *
1590564 AGCCCATTAAATTGTCTGAAATGGGGACACTTGTTTCAAATGGTCAAAAAATCTTGTACACTTTG
385 AG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTG
* * * *
1590629 AG-TTTTAGCTGACTTTTTTTATGCACCGGGCAA-AAAAATACAAGGATCATG-CTACCAAGTTT
449 AGTTTTTAGCTGAATTTTTTTGTGCA--TGGCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
1590691 GGGGCCAAAAATCCTTCTGAAAAAATTTT-AAAAATCTGGAACCGTAACAAAGTTTTGAAAAAAT
512 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA-AAAG-TTT-CAAAAAT
* *
1590755 CCGTGAAAAATAGAAAATGAGTCGTCCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATT
574 -CGTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * **
1590820 GTATGAA-TTAC-AGCCAT-AAATTCGTATTGGCACGA-AG-AATATGAAGATGTGAATAAACCG
637 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ACAGAAATATGAAGATGTGCCTAAACC-
* * * *
1590880 GCACCTACCAACCTATCGAGCGACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCC
700 -CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
*
1590945 CGCCCGCCTGCTCATTTCATCGGTTGGCTTA-GCA-ATACGGAGTTCATTCCCAGTCTAAGATCA
764 CG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATATA--GAGTTCATTCCCAGTCTAAGATCA
* *** * ** **
1591008 GACCCGATCGAGGGTTGTGGCAGCAGGATCT-ACAGCACATAGAGGGGGACCCGACCGATCCCC-
823 GACCGGATCGAGGGTTGCAACAGCAGGAT-TGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
1591071 AGCTTGCG
887 A-CTTGCG
* * * *
1591079 CATCCTACCCCTCTGGCCGGTTGAACACCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * *
1591144 AGTTCATTCCCAGTCGAAGCATACGAAGTTTATTCCCAGTCTAAGATCAGAACAGATCAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT-GAGGGTT
* * * * *
1591209 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTACCACATTTTT-TTCGTTGGGGCACCATCA
130 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * ** *
1591273 CCCGAGCATCGTCGGAGAACCTGACAGGCGGTATTGGGGTTTCGGTGATCGGGGGGG-TTGGGGG
195 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCCGACGATCGGGGGGGCGTGGGGG
* *
1591337 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGT-CCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
1591401 AAACCTCGAGAACTCACATCCCCTTAAAGAGCACTTGAGATTTTATAGGTTTGCTGCCAGTAGGC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
1591466 ATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
* * *
1591531 TTAGCTGAATTTTTTTTTGCATGGCAACAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
1591596 AAACTCCATCCAAAAAAATTTTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
519 AAACTCCTTCCGAAAAAATTTT--AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
1591661 ATAGAAAACGAGACGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTT
582 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
1591726 AGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
647 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
1591791 TATCGATCAACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT
712 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTC
* * * * * * * *
1591856 GTTTCGTCGATTGGCTTAGGCATACAAAGTTCATTCCCAGTGTAAGATCGGACCGGATAGAAGGT
773 GTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * * * *
1591921 TGCAATAGCAGGATTAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCAACTTGCA
838 TGCAACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* *
1591977 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAG
1 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
1592042 AGTTCATTCCCAGTCTAAG-AT--TG-G---A---CC-G-----GA-C----C----GAGGGTTG
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATGAGGGTTG
* * *
1592082 CGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * *
1592147 CGGACCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGAGGGGGGG
196 CGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCCGACGATCGGGGGG-GCGTGGGGG
*
1592212 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-ACCCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
1592276 AAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * ** *
1592341 ATTAAAGTATCTAAAATGGGTACACCTTTGGCAAATGATCACAAAATCCTGTACACTTTGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
*
1592406 TTAGCTGAATATTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
1592471 AAACTGCTTCCGAAAAAATTTTAAACAATCCCGAACAGCT-AAAAGTGTCAAAAATCATGAAAAA
519 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAA
* * *
1592535 TAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
1592600 CAAGCTATAAATATGGCATTGGCACACAGAAATATGAAGATGTGCCTACACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ***
1592665 ATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGAAATAGTGCCCGCCCGCCCGCTCGTTTC
713 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
* * **
1592730 ATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGG
778 ATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAA
* * * *
1592795 CAGTAGGATTGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGTG
843 CAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* * * * * * *
1592846 CATCCCATCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGG
1 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * *
1592911 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGATCAGACTGAGTGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-TGAGGGTT
* * *
1592976 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCA
130 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
1593041 CCGGAGCATCGTCGGAGAACCTAATCGACGGCATTGAGTTCCGACGATCGGGGGGGCCGTGGGGG
195 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGTTCCGACGATCGGGGGGG-CGTGGGGG
* *
1593106 TGTGCACACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* ** * *
1593171 AAAACTCTTGAACACACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1593236 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGATCACAAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
** * * * *
1593301 TTAGCAAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAGTTTGGGTCCA
454 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * **
1593366 AAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
519 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
1593431 AGAAAACGAGTCGTCTTGCCATGAAACGTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *** * *
1593496 AAGCCATAAAAATGGCATTGGCACATAGAAATCCAAAGAAGTGCCTAAACCCACCGACCACCCTA
649 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
1593561 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGTCCGC
714 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG----CCCGCCCGC
* * * * *
1593626 TTGTTTCATCGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGG
771 TCGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
* * *
1593691 GTTGCAACAGCAAGATCGGCAGCATGCAGA---GG----GG--GA--CCCGACTTGCG
836 GTTGCAACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* ** * * *
1593738 CATCCCGCCTATCTGGCCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
1 CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * *
1593803 TGTTCATTCTCAGTGTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT-GAGGGTT
* * * * * *
1593868 GCGCCAGCATATTCTGGGCTCGGGCATGTGTTGGTGCCACATTTCTCTTCGTCGAGGCACCATCG
130 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* **
1593933 CC-G-G-A------GA-AA-TTGATTGACGGCATTGTGGTTCCGACGATC--GGGGG-GT-----
195 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG-GGTTCCGACGATCGGGGGGGCGTGGGGG
1593979 T-TGCGCACATGATGTGCGA----TG--GG----T-G--C------TGG---------CC-C-T-
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1594012 ----CT--AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1594071 ATTAAAGTGTCTGAAATGGAGACACTTTTTCCAAATGATCACAAAATCTTGTACACTTTGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
* * *
1594136 TTAGCTGAATTTTTTTGTGCATGCCATA-AAAAATACAAGGATCACGTCTACCAGGTTTGGGTCC
454 TTAGCTGAATTTTTTTGTGCATGGCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
1594200 AAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAATTTTTAAAAATTGTGAAAAA
518 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * *
1594265 TAGAAAACGAGTCATCTTCCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* **
1594330 CAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
1594395 ATCGATCCAAGGCTTGCTCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCACTCTTTTC
713 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC
*
1594460 GTCGGTTGGCTTAGGCATA
778 ATCGGTTGGCTTAGGCATA
1594479 CGGATGTGTG
Statistics
Matches: 2966, Mismatches: 366, Indels: 212
0.84 0.10 0.06
Matches are distributed among these distances:
827 28 0.01
831 6 0.00
833 1 0.00
835 383 0.13
836 1 0.00
837 2 0.00
842 1 0.00
843 1 0.00
844 2 0.00
853 3 0.00
859 1 0.00
861 1 0.00
862 1 0.00
866 2 0.00
868 2 0.00
869 194 0.07
870 2 0.00
872 64 0.02
873 258 0.09
874 8 0.00
875 255 0.09
876 1 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 6 0.00
881 14 0.00
882 16 0.01
883 2 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 2 0.00
891 3 0.00
892 178 0.06
893 1 0.00
894 74 0.02
895 491 0.17
896 50 0.02
897 104 0.04
898 314 0.11
899 70 0.02
900 89 0.03
901 48 0.02
902 83 0.03
903 193 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CATCCCACCCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGTTCCGACGATCGGGGGGGCGTGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTT
AGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATC
GGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAG
CAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
Found at i:1593825 original size:26 final size:26
Alignment explanation
Indices: 1593795--1593847 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1593785 GTTGACTTAG
* * * *
1593795 GCATACGGTGTTCATTCTCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1593821 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1593847 G
1 G
1593848 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1595023 original size:26 final size:26
Alignment explanation
Indices: 1594993--1595045 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1594983 GTTGACTTAG
* *
1594993 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTAATTCCCAGTCTAA
**
1595019 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAAAGTTAATTCCCAGTCTAA
1595045 G
1 G
1595046 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTAATTCCCAGTCTAA
Found at i:1596643 original size:900 final size:892
Alignment explanation
Indices: 1594725--1603620 Score: 10326
Period size: 856 Copynumber: 10.0 Consensus size: 892
1594715 CAAGCTTGGG
* * * *
1594725 GCCTAAACCCACCGACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* *
1594790 TGCCCGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
66 TGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * * * * *
1594855 TCTAAGATTGGATCGGACTGAGGG-TTGCTGTAGCAAGATCGACAGCACACAGAGGGGGACCCGA
127 TCTAAGATCAGACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-
* * * * * ** *
1594919 CCGATCC-CCGACTTGCGCATCCTGCCCCCCTGGTCGGTTGAGCACCCATACGCTCATTTCGTGG
191 CCGATCCTCAG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
** * *
1594983 GTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGAT
255 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
1595048 CGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCACATTTTTC
320 C-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
1595113 TTCCTCGGGGCTCCATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCTGACG
384 TTCGTCGGGGCACCAT---C---GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
1595178 ATC-AGGGAGGTCGGGGGGGTGTGCGCACGTGATCTGCGATGGGTGCTGGTACTTGGCCCTTATA
443 ATCGAGGG-GG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
1595242 TTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
506 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
1595307 CAGGTTTCCTACCAGTAGCAATTAAAGAGTCTGAAATGAGGACA-TTTTTTCAAATGGTCACAAA
571 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
1595371 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
636 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
1595436 GTCTACCAAGTTTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
701 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * *
1595501 TTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
766 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1595566 GGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGAATGCAGAAATATGAAGATGT
831 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * * * *
1595628 ACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCCCTGGTCGGCATAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* ** *
1595693 TGCCCGCCCGCCCACCCGCTCGTTTCGTTTGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTA
66 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
1595758 AGATCAGACCGGACTGAGGG-TGGTGGTAGCAGGATCGGTAGCACGCAGCGAGGCACCCAGTCGA
131 AGATCAGACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GCCGA
* * *** * * *
1595822 TCCGCAGCTTGCGTATCCCATCCCTCTAGCCGGCTGAGCGCCCGCACCCTCGTTTCATGGGTTGA
195 TCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
1595887 CTTAGGCATACGGAGTTCCTTCCCAGTATAAGCATACAGAGTTCATTCCTAGTAC-AAGATCGAA
260 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-CTAAGATCG-A
* * *
1595951 ATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGTATTTTTCTTCG
323 ACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
1596016 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCG
388 TCGGGGCACCA---TC---GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
*
1596081 AGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
447 AGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
1596146 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGT
511 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1596211 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTT
576 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
1596276 GTACACTTCGATTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
641 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
1596341 CCAAGTTTGGGGCAAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
706 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
*
1596406 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTGAA-GGAC
771 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGAC
* * * **
1596470 CATTGTATGAATTTACAACCCATAAAAATTGCATTGGCTTGCAGAAATATGAAGATAC
835 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* ** * * *
1596528 GCCTAAACCCACCCACCATACAATCGATCGACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * *
1596593 TGCCCGCCCGCCCGCCCGCTCATTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTA
66 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
1596658 AGATC-GAACCAGACTGAGGGAT-GTGATAGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCG
131 AGATCAG-ACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC-CGCCG
* * * * * * *
1596721 ATCCTCGGCTTGTGCATCCTACCCCTCTGGTCGGCTGAGCGCCTGCATGCTTGTTTCGTGGGTTG
194 ATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
1596786 ACTTATGCATACGGAGTTCATTCCCA--CT---C-TA---AG---ATT----G-----GA-C---
259 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* *
1596826 CGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT
324 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
1596891 CGGGGCACCATCG---C-T-GGAGAACCTGACCTGTGGCATTGGGGTTTCGACGATCCG-GGGGG
389 CGGGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGAGGGGG
* * * *
1596950 CCGGGGGGTTTGAGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCTCTAT
453 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1597015 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGC
518 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1597080 CTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACATT
583 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
1597145 TCAAGTTTTTAGCTGAATATTTTTGTGCAGGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
648 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
1597210 TGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATTG
713 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
*
1597275 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTAT
778 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1597340 GAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
843 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
1597390 GACTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGTCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * *
1597455 T----GCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
66 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * **
1597516 AGATC-GAACCAGACTGAGGGAT-GCGATAGTAGGATCGGTAGCACGTAGAGGGGGACGGGCCGA
131 AGATCAG-ACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGCCGA
* * * * * * * *
1597579 TCCTC-GGTTGTGCATCCTACCCCTTTGGTCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGA
195 TCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
1597643 CTTAGGTATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C--A-
260 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * * * *
1597684 -GACCGATGGTTGCGGCAGCACATGTTGGACTCGAGCATGTGCTGGTGCCACATTTTTCTTCATC
325 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
1597748 GGGGCACCAT--CA-C--CGGAGAACCTGACCGACGACATTGGGGTTTCGACGATCCG-TGGGGC
390 GGGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGAGGGGGC
*
1597807 CGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
454 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
1597872 CCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCC
519 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
1597937 TGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTT
584 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
1598002 CGAGTTTTTACCTGAATATTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT
649 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* *
1598067 GGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
714 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* *
1598132 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATG
779 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
1598197 AATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
844 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
1598246 GACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * *
1598311 TGCCCGTCCCGCCCGCCTACCCGCCCGCTCGTTTCATCTGTTAGCTTAGGCATGCGGAGTTCATT
66 T----G-CCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
1598376 ACCAGTCTAAGATCAGACC-GAAATGAGGG-TTGCGGCAGCAGGAACGGTAGCACACAGAGGGGG
122 CCCAGTCTAAGATCAGACCAG-ACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
1598439 ACCCGCCCGTTCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTT
186 ACCCG-CCGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
1598504 CATGTGTTGACTTAGGCATCCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
250 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
1598569 AAGATCGGACCGGACCAAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGTTGGTGCCGCAT
315 AAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* ** * * * *
1598634 TTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTTAGAGAAGCTGACCGACGGTATTGGGGTTT
379 TTTTCTTCGTCGGGGCACCAT---C---GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
1598699 TGACGATTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
438 CGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
1598764 ATATTTGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATT
503 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
1598829 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCAC
568 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
1598894 AAAATCTTTTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
633 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* ** * *
1598959 CACGTCTTCCAAGTTTGGGGTAAAAACTCCTTTCGAAAAAA--TT------T-T---A----AAA
698 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* **
1599008 AA---TC----A---TGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCTTGTGAAGGCTT
763 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
1599063 AAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCCTTGGCATGCAGAAATATGAAAATGT
828 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * ** * * *
1599128 GCCTAAACCCACCTACCACACAATCGATTCACGGCTTGTACATCCCGTCTCTCTGGCCTGTGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * * *
1599193 TGCCTGCTCGTTCGCCCCGCCTCCCGCTCATTTCGTCAGTCGGCTTAGGCATACAGAGTTCATTC
66 TGCCCGC-C---CG-CCCG---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * ** *
1599258 CCAAACTAAGAT-TGAACCAAACCGAGGGAT-ACGACAGCAGGATCGGCAGCACCCAGAGGGGGA
123 CCAGTCTAAGATCAG-ACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG-
** ** * ** * * * * * *
1599321 ACTGGTAGATCCTCGGCTTATGCATCCTGCCCCTCTGGTCGACTAAGTGCCCGCATGCTCATTT-
186 ACCCGCCGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1599385 -T--G-TG-----GG--T--GGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTA
251 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
*
1599425 AGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGATGCCGCATT
316 AGATCGAA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
1599490 TTTCTTCGTCGGGG---CAT--CATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCTGACGAT
380 TTTCTTCGTCGGGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * * *
1599550 CCAGGGGGCCAGGGGCTGTACGCACATGATGTGAGATGGGTGTTGGTACTTGGCCCTTATATTGG
445 CGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
1599615 CCCCCTATCCCTCATCAAACCTCGAGAACTCAGC-CCCCCTTAAAGAGCATTTGAGATTTTACAG
510 CCCCCTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
1599679 GTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
574 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1599744 TTGTACACTTTGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGATCACGTC
639 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
*
1599809 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-AGACCGTAAAAAATT
704 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGA-ACCGTAAAAAGTT
** * *
1599873 TTGAAAATCGTGAAAAATAGAAAATGAGT--T-GTGCCATGAAACTTCACGTGAAGGCTTAAGGG
768 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
1599935 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
833 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * *
1599995 GCCTAAACCCACCTACCAACCTATTGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * * **
1600060 TGCCTGCCCACCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTTTCAGTCTA
66 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
1600125 AGATTAGACCAGACCGAGTCTAAGATTGGACTGAATCGAGGGTTATGGTAGCAGGATCGGCAGCA
131 AGA-T----CAGACC-AGACT--GA--GG---G-AT----GG---CGGTAGCAGGATCGGCAGCA
* * * * *
1600190 TGCAGAGGCGGACCCAACCGATCCTCAGCTTGCTCATCCTGCCCCTCTAGCCGGCTGAGCGCCCG
175 CGCAGAGGGGGACCC-GCCGATCCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
1600255 CACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
239 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
1600320 ATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGTAGCTCATGCTGGGCTCGGGCATGTGC
304 ATTCCCAGTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** * *
1600385 TGGTGTCACATTTTTGC-TCACCAGGGCACCATCGCCGAAGCATCGCCGGAGAACCTGACCGGCG
368 TGGTGCCGCATTTTT-CTTCGTCGGGGCACCAT---C---GCATCGTCGGAGAACCTGACCGGCG
* * * *
1600449 GCATTGGGGTTTCGGCGATAGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
426 GCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
1600514 GTACTTGGCCCTCATGTTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCACGCCCCCTAAAA
490 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAA
* * * * *
1600578 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCATTAAAGCGTCTGGAATGGGAACACTTT
554 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1600643 TTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAA
619 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * * * ** **
1600708 AAACATATAAGGATCATGTCTTCAAAGTTTGGGGCCAAAAGTATTTCTGAAAAAATTTTAAAAAA
684 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
*
1600773 TCTCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTTGTCTTGCCATGAAACT
749 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1600837 TCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
814 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
1600902 AAATATGAAGATGA
879 AAATATGAAGATGT
* * * * * * *
1600916 GCCTAAACCCACCTACCACCCTATTGACCCACGGCTTGCACATCCTGCCTTTCTGGTCGACGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * *
1600981 T----GCCCGCCCGCCCGTTCATTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTA
66 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * ** ** * * *
1601042 AGATTAGACCATACCAAGTG-TTACAACT-GCAGCATCGGTAGCACGCAAAGGGGGACCCGACCG
131 AGATCAGACCAGACTGAGGGATGGC-GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-CCG
* * * * * *
1601105 ATCCCCAGCTTGAGCAT-CTCGCCCCTCTGACCGACTGAGCGCCCGCATGCTCGTTTCATGGGTT
194 ATCCTCAGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
1601169 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTT-CC---C--AGA-C--
258 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * *
1601225 -CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCG
323 ACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * **
1601289 TCGGGGCACCATCG---C--CGGAGAACCTGACCTGTGGCATTGGGGTTCTAACGATC-AGGGGG
388 TCGGGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG
* * *
1601348 GCGGGGTGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTAT
453 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
1601413 CCCTCATCAAACCTTGAGACCTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
518 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1601478 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAAT
583 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
1601543 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATTACAAGGATCACGTCTCCCAAGT
648 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA-TACAAGGATCACGTCTACCAAGT
* ** * * *
1601608 TTGTGGCCAAAACAACTTCCGAAAAAATTTTAAAAAATGC-CAAACCGCAAAAAGTTTCAAAAAT
712 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAAT
* * * *
1601672 CATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTAAAGGCTTAAGGGACGATTGT
776 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
1601737 ATGAATTTACAACCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
841 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
1601789 GCCTAAACCCA-CTACCACCCTATCGATCAACGG-TTGCGCATCCCGTCTCTCTGGCCGGCGTAG
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * *
1601852 TGCCCCCGCCCGCCCCCGCCGCCGCTTCTTTTCGTCGTTTGGCTTAGGCATATGG-GCTTCATTC
66 TG--CCCGCCCG--CCCG-C-CCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTC
* * * * * * *
1601916 ACAGTCTAAGATCTGACCAAACTGA-GG-TTGCGGTAGCAAGATCGACAGCAC-TAGAGGGGGAC
123 CCAGTCTAAGATCAGACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
1601978 CCGATTCGATCC-C-GACTTGAGCATCCTGCCCCTCTGGCTGGCTGAGCACCCCGCACGCTTGTT
188 CCG--CCGATCCTCAG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTT
* * *
1602041 TCGT-GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGGACTTCATTCCCAGTC
249 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * * *
1602105 TAAGATCGGATTGGATCAAGGGTTACGGCAGCACATGCTGGGCTTC-AGCATGTGCTCTGGTG-C
314 TAAGATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTG--CTGGTGCC
* * * *** *
1602168 GCATTTTCCTTCG-CTGGGGCACCATCGGTCGAGCATCACCGAAGACTGACC-GCGGCATTGGGG
375 GCATTTTTCTTCGTC-GGGGCACCATC-G-C-ATCGTCGGAGAA-CCTGACCGGCGGCATTGGGG
* * * * *
1602231 TTCC-AGGGAATCGGGGGGGCCGGGAGGGTATGCGCAAATGATGTGTGATGGGTGCCTGGTACTT
435 TTCCGA-CG-ATCGAGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTG-CTGGTACTT
*
1602295 GGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAA-TCACACCCCCTTAAAGAGCATT
496 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
1602359 TGAGATTTTACAGGTTTGGCTGCCAGTAGCCCATTAAAGTATCTGAAATGGGGACATTTTTTTGA
561 TGAGATTTTACAGGTTT-GCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
1602424 AATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTG-CAAACAAAA
624 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * * *
1602487 TACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAACAATTTTAAAAAAATCCC
689 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCTC
* * *
1602552 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC-TGCCATGAAAACTTCA
753 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCA
* ** * ** *
1602616 CGTTAAGGCTTAAGGGATGACTGTATGAATTTAC-AGCCATAAAAATGGCATTGGCACACAAAAA
817 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
1602680 TATGAGGATGT
882 TATGAAGATGT
* * *
1602691 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCGTCTCTCTAGTCGGCGTA
1 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGCCTCTCTGGCCGGCGTA
* * * * *
1602756 GTGCCCGCCGCCACCCGCCCGCTCGTTTCGTCCGTTGGCTGAGGCATACGGACTTCATTCCCAAT
65 GTGCCCG-C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** ** * *
1602821 CTAAGATTGGACCAGACTGAGGG-TTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAT
128 CTAAGATCAGACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG--
* * * * * * * *
1602885 CGGAACC-CTAGTTTGCACATCAC-GCCTCTCTGGCCAGCTGAGCACCCCGCACGCTCGTTTTGT
191 CCGATCCTC-AGCTTGCGCATC-CTGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGT
* * *
1602948 GGGTTGACTTAGGCATAACGAAATTCATTCCCAGTCTGAGCATACGGAGTTCATTCCCAGTCTAA
253 GGGTTGACTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1603013 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCTGCATTT
317 GATC-GAACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *
1603078 TTCTTCGTCGGGGCACCATCG---C--CGGAGAACCTGACCGGTGGCATTGGGGTTCCAACGATC
381 TTCTTCGTCGGGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
1603138 G-GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGC
446 GAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
1603202 CCCCTATCCCTCATCAAACCTTGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
511 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
1603267 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
576 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
1603332 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTC
641 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
1603397 CCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
706 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
* * * *
1603462 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACG
771 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
1603527 ATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGCAGAAATATGAAGATGT
836 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
*
1603583 GCCTAAACCCACCTACCACCCTATCGATGCAACGGCTT
1 GCCTAAACCCACCTACCACCCTATCGAT-CCACGGCTT
1603621 ATGTCATGGG
Statistics
Matches: 6913, Mismatches: 802, Indels: 566
0.83 0.10 0.07
Matches are distributed among these distances:
844 305 0.04
845 1 0.00
846 2 0.00
852 4 0.00
853 1 0.00
854 2 0.00
855 94 0.01
856 673 0.10
857 12 0.00
858 113 0.02
859 45 0.01
860 8 0.00
861 4 0.00
862 458 0.07
863 44 0.01
864 7 0.00
865 8 0.00
866 1 0.00
867 150 0.02
868 4 0.00
869 96 0.01
870 25 0.00
871 320 0.05
872 105 0.02
873 150 0.02
874 73 0.01
875 2 0.00
876 2 0.00
877 10 0.00
878 8 0.00
879 8 0.00
880 92 0.01
881 245 0.04
882 215 0.03
883 2 0.00
884 66 0.01
885 3 0.00
886 6 0.00
887 1 0.00
888 4 0.00
889 5 0.00
891 81 0.01
892 286 0.04
893 147 0.02
894 15 0.00
895 141 0.02
896 22 0.00
897 66 0.01
898 6 0.00
899 453 0.07
900 578 0.08
901 40 0.01
902 134 0.02
903 310 0.04
904 151 0.02
905 151 0.02
906 4 0.00
907 93 0.01
908 298 0.04
909 1 0.00
910 3 0.00
911 2 0.00
912 5 0.00
916 1 0.00
917 54 0.01
918 62 0.01
919 287 0.04
920 2 0.00
921 146 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCAGACTGAGGGATGGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGCCGAT
CCTCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
Found at i:1598553 original size:26 final size:26
Alignment explanation
Indices: 1598519--1598571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1598509 GTTGACTTAG
*
1598519 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1598545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1598571 G
1 G
1598572 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1600311 original size:26 final size:26
Alignment explanation
Indices: 1600281--1600333 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1600271 GTTGACTTAG
*
1600281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1600307 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1600333 G
1 G
1600334 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1606657 original size:26 final size:26
Alignment explanation
Indices: 1606620--1606672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1606610 GTTGACTTAG
1606620 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1606646 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1606672 G
1 G
1606673 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1607555 original size:26 final size:26
Alignment explanation
Indices: 1607518--1607570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1607508 GTTGACTTAG
*
1607518 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1607544 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1607570 G
1 G
1607571 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1608406 original size:26 final size:26
Alignment explanation
Indices: 1608376--1608428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1608366 GTTGACTTAG
1608376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1608402 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1608428 G
1 G
1608429 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1608859 original size:874 final size:877
Alignment explanation
Indices: 1605867--1610204 Score: 5456
Period size: 898 Copynumber: 4.9 Consensus size: 877
1605857 TTTCTTCGTT
* * * * *
1605867 GGAGAACCTGATCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGTGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
* * *
1605932 ATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1605997 CTCACACCCCCTTAAAGATCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
1606062 GAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACTCTTCGAGTTTTTAGCTCAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
1606127 TTTTATGTAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGG-CAAAAATCCTTCT
260 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAAATCCTTCC
* * * *
1606191 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGT
324 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* *
1606256 CATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
1606321 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
454 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1606386 CTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCGGCTCGCCCGCTCGTTTCGTCG
519 CTTG-------CG-C-ATCT-----GCG--GTGCCCG-CC--C-GCT------CTCGTTTCGTCG
1606451 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGC
558 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGC
* * * *
1606516 AGGATCGGCAACACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCC
623 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGACTTGCGCATCCCGCCCCTCTGGCC
*
1606581 GGCTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTA
688 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTA
* * * * *
1606645 AGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGGGAGCACAGGCTAG
752 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
* * * * * *
1606710 GCTCGGGCATGTGTTGCTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGGGCTTCGTC
817 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * ** *
1606771 GGATAACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
*
1606836 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTG-CCCCTAT-CCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1606899 TCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1606964 AAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTT
196 AAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1607029 TTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTAGGGCCAAAACTCCTACCG
260 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * *
1607094 AAAAAAATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGATAACGAGTC
325 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1607159 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCTATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1607224 TGGCATTGGCACACAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
1607289 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGCCCACTCGTTTCGTCGGTTGG
520 TTGCGCA---------TCT-G-C---G--GTGCCCGCCCGCT------CTCGTTTCGTCGGTTGG
* * * * *
1607354 CCTAGGCATACGGAGTTCATTCCCATTTTAAGATTGGACCGGACCGAGGGTT-CTGGTAGCAAGA
563 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC-GGCAGCAGGA
* * * * *
1607418 TCGACAGCACGCAGAGGGGGACCCGACGGATCCC-TAGCTTGAGCATCCCGCTCCTCTGGCCGGC
627 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGA-CTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1607482 TGAGCACTCGCTCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCA
691 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* *
1607547 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTC
756 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTC
1607612 GGGCATGTGTTGGTGCCGCATTTTTCTTCGTC--GG----A--G-C--A-C--CGCC
821 GGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * *
1607655 -GACGAACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTGCGCACAT
1 GGA-GAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACAT
* * * *
1607718 GATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
1607783 ACTCGCACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTT
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
1607848 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAATTTTTGGCTGATTT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * * *
1607913 TTTTTGTGCATGCCAACAAAAATACGAGGATCACATCTAACAAGTTTGGGACCAAAACTCCTTCT
259 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * *
1607978 GAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
324 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* *
1608043 CGTCTTGCCATGAAACTTCACGTGGAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
***
1608108 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
454 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1608173 CTTGCGCATCT-C-GT-CCCGCCCGCT-T-GTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATT
519 CTTGCGCATCTGCGGTGCCCGCCCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
1608233 CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAAAGAGGGAC
584 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * * * *
1608298 CCGGCTGATCCCGGACTTGCGCATCCCACCCCTCTGGCCAGCCGGGCACCCGCACGCTTGTTTCA
649 CCGACCGATCCCGGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* *
1608363 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
714 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
1608428 GATCAGACCAGTCCGAGGGTTGCGGTAGCACATGCTAGGTTCGGGAATGTGTTGGTGCCATATTT
779 GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTT
1608493 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
844 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
*
1608527 GGAGAACCTGACAGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGGTGTGCGCACAT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGGTGTGCGCACAT
* *
1608592 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1608657 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1608722 TGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
1608787 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCCAAAAATCCTTCC
259 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* *
1608852 CAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
324 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
1608917 CATCTTGCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCTA-AAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
1608981 ATGGCATTGGTTCACAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGAT-CACGG
454 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
1609045 CTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACTAGTTTCATCAGTTG
519 CTTGCGCA---------TCT-----GCG--GTGCCCGCCCG-CT-----CTCGTTTCGTCGGTTG
* ***
1609110 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCTTTAGGA
562 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGA
* * *
1609175 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGG-CTTGCGCATCCCGCCCCTCTAGCTGGC
627 TCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGACTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1609239 TGAGCACCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTCCATTCCCAGTCTAAGCA
691 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* * * * *
1609304 TATGGAGTTCATTCCCAATCTAAGATC-GAACC-GAACCGAGGATTG-GGACAGCACATTCTGGG
756 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGG-CAGCACATGCTAGG
* * *
1609366 CTCGCGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
818 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * * * * *
1609426 GGAGAACTTAACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCCGGGGGGGTGTTCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGGGTGTGCGCACATG
* * *
1609491 ATGTGCAATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCACATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * * * * * *
1609555 CTCGCATCCCCTTAAAGGGTATTGGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATATCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1609620 GAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
1609685 TTTTTTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TG
260 TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * ** * *
1609749 CAAAAAATTTTAAAAATTCTCGAACCGTGAAAA-TTTTCAAAAATTGTGAAAGATAGAAAACGAG
325 -AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAG
* *
1609813 TCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1609878 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
1609943 GCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCACGTCTGCCCGCCCGCTCGTTTCGTC
518 GCTTGCGCA---------TCT-GC----G--GT----GC-C--C-GCCCG--CTCTCGTTTCGTC
* * * * * *
1610008 GATCGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATGGGATCGGACCGAGGGTTGCGACAG
557 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAG
* * * * * *
1610073 TAGGATCGGTAACACGCAGAGGGGGACCCGACCGATCCC-CAGCTTGCGTATCCCACCCCTCTGG
622 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGA-CTTGCGCATCCCGCCCCTCTGG
* * * * *
1610137 CTGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
686 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
1610202 AAG
751 AAG
1610205 ATCGGACCGG
Statistics
Matches: 3026, Mismatches: 315, Indels: 187
0.86 0.09 0.05
Matches are distributed among these distances:
858 264 0.09
859 3 0.00
860 2 0.00
864 1 0.00
866 11 0.00
867 3 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 54 0.02
873 60 0.02
874 370 0.12
876 3 0.00
881 3 0.00
883 2 0.00
884 83 0.03
885 304 0.10
886 89 0.03
887 1 0.00
889 1 0.00
890 3 0.00
891 8 0.00
892 3 0.00
894 1 0.00
895 5 0.00
896 6 0.00
897 308 0.10
898 406 0.13
899 345 0.11
900 3 0.00
901 96 0.03
902 306 0.10
903 240 0.08
904 31 0.01
906 1 0.00
907 5 0.00
908 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCTGCGGTGCCCGCCCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
GACCGATCCCGGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGCC
Found at i:1609952 original size:899 final size:900
Alignment explanation
Indices: 1608187--1610204 Score: 2913
Period size: 899 Copynumber: 2.2 Consensus size: 900
1608177 CGCATCTCGT
* * *
1608187 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCCCACTAGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
1608252 GGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAAAGAGGGACCCGGCTGATCCCGGACTTG
65 GGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGG-CTTG
** * * * *
1608317 CGCATCCCACCCCTCTGGCCAGCCGGGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
129 CGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
1608382 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGTCCGAGGG
194 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGA
* * * *
1608447 TTGCGGTAGCACATGCTAGGTTCGGGAATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCAT
259 TTGCGGCAGCACATGCTAGGCTCGCGAATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * *
1608512 CGTCGGAGCATCGCCGGAGAACCTGACAGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGG
324 CGCCGGAGCATCGCCGGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGAGGGGGCCCGGG
* *
1608577 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
389 GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCA
* *
1608642 CATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
454 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGT
* *
1608707 AGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
519 AGCCATTAAAATATCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
1608772 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGG
584 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGG
1608837 GCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAA
649 GCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAA
* *
1608902 AAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAAT
714 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
1608967 TTACAAGCTAAAAAATGGCATTGGTTCACAGAAATATGAAGATGTGCCTAAACCCACGTACCACC
779 TTACAAGCTAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
1609032 CTATCGATCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-C-G
844 CTATCGATCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCTG
* * *
1609086 CCTGCCCACTAGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCCCACTAGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** *
1609151 GGACTGAGGGTTGCGGCTTTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
65 GGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGGCTTG
* * *
1609216 CGCATCCCGCCCCTCTAGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATAC
129 CGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
1609281 AGAGTCCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATC-GAACC-GAACCGAG
194 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAG-ACCAG-ACCGAG
* * * *
1609344 GATTG-GGACAGCACATTCTGGGCTCGCGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCAC
257 GATTGCGG-CAGCACATGCTAGGCTCGCGAATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCAC
* * * * *
1609408 CATCGCCGGAGCATCGTCGGAGAACTTAACCGGCGGCATTGGGGTTTCGACGATCG-GGGGGCCC
321 CATCGCCGGAGCATCGCCGGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGAGGGGGCCC
* *
1609472 GGGGGGGTGTTCGCACATGATGTGCAATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATC
386 GGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * * *
1609536 CCACATCAAACCTCGAGAACTCGCATCCCCTTAAAGGGTATTGGAGATTTTATAGGTTTGCTGCC
451 CCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCC
* *
1609601 AGTAGCCATTAAAATATCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTT
516 AGTAGCCATTAAAATATCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
1609666 CGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTT
581 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGT
** * * * ** **
1609731 GGGGCCAAAAATCCTTTGCAAAAAATTTTAAAAATTCTCGAACCGTGAAAA-TTTTCAAAAATTG
646 GGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTT-AAAAATCA
* * *
1609795 TGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTAT
710 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1609860 GAATTTACAAGGC-ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
775 GAATTTACAA-GCTA-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* *
1609924 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCACGTCTG
838 ACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACG-CTG
* * * * * *
1609989 CCCGCCCGCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATGGGATC
1 CCCGCCCACTAGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
1610054 GGACCGAGGGTTGCGACAGTAGGATCGGTAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
65 GGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTG
* * *
1610119 CGTATCCCACCCCTCTGGCTGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
129 CGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
1610184 GGAGTTCATTCCCAATCTAAG
194 GGAGTTCATTCCCAGTCTAAG
1610205 ATCGGACCGG
Statistics
Matches: 990, Mismatches: 115, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
896 4 0.00
897 306 0.31
898 126 0.13
899 359 0.36
900 4 0.00
902 2 0.00
903 187 0.19
904 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCGCCCACTAGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCG
CATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGATT
GCGGCAGCACATGCTAGGCTCGCGAATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
CCGGAGCATCGCCGGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGAGGGGGCCCGGGGG
GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACA
TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAATATCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGC
CAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAA
ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCTAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCTG
Found at i:1612482 original size:26 final size:26
Alignment explanation
Indices: 1612452--1612504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1612442 GTTGACTTAG
*
1612452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1612478 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1612504 G
1 G
1612505 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1613290 original size:866 final size:855
Alignment explanation
Indices: 1612265--1623603 Score: 9336
Period size: 866 Copynumber: 12.9 Consensus size: 855
1612255 TTCACCCACT
* * ** * * * *
1612265 CGCCTGCTCGTTTCGTCGATTGGCTTAGGCATATAGAGTTCATTCCTAATGTAAGATTGGACC-A
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * * *
1612329 GATGGAGCGTTGCAGTAGTAGGATC-AGCAGCACGT-AGAGAGGGACCCGATCGATCCTCAGCTT
66 -ATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTT
* * ** * ** * * * *
1612392 ACGGATCCCATCCCACTGGCCGGTTAAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
1612457 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCAT-CG-AG---A-T-CTAG-CT--GATCAGACC--A-CGAGG
* * *
1612522 GTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCATCGGGGCACCA
246 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
1612587 TCACCGGAGCATCGCAGGAGAACTTGTCCGGCAGCATTGGGGTTCCGACGATCGGGGGGACTGGG
311 TCGCCGGAGCATCGC-GGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGG
* * *
1612652 GGGGTGTGCGCACATGACGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
375 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1612717 CATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGG
440 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
1612781 AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
505 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
1612846 GTTTTTAGCTGAATTTTTTTTGTGCATGCCAA-AAAAATACAGGGATCATGTCTACCAAGTTTGG
570 GTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * ** *
1612910 GGCTAAAACTCCTTTCGAAGAAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATTATGA
634 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
* *
1612975 ACAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
699 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
1613040 TTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATTTGCGT-ATCTCGTCTCTTT
764 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATTTGCGTCATCTCGTCTCTTT
*
1613104 GGCCGGTGTAGTGCCCGTTCGCCCGCC
829 GGCCGGTGTAGTGCCCGTCCGCCCGCC
* * * * *
1613131 CACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGATCATTCCCAGCCTAAGATCGGACCGA
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * *
1613196 ATCAAGCGTTACGGCAGCAGGATCGACAGCACATCA-AGGGGGACTCGGTCGATCCCCAGCTTGC
66 ATCGAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTTGC
* ** * * * * * *
1613260 GCATCTCTACCCTCTGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGAATACA
131 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
1613325 GAGTTCATTCCCAGTCTAAG-ATCG-G----A-C----CAGA-C-CGAGGGTTGCGGCAGCACAT
196 GAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCACAT
* ** * * * * ** * *
1613377 GCTAGGCTCAAGCATGTGTTGGTGCCACATTTTTCTTTGTTGGGGCACCATCATCGGAGCAACAC
261 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-G
* * * * * *
1613442 CAGAGAACCTGACTGACAGCATTGGGGTTTCGACGATC-AGGGGGATCGGGGGGCGTGTGCGCAC
325 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCT-GGGGGG-GTGTGCGCAC
** * * * *
1613506 ATGATGTGCGATGGGTGCTATTACTTGGCCCTTACATTGGTCCCCTATCTCTCATCAAACCTTAA
388 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* * * * *
1613571 GAACTCACATCCCTTTAAAGAGTATTTGAGATTTTATAGCTTTGCTGTCC-GTAGCCATTAAAGT
453 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGT
1613635 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
517 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
1613700 ATTTTTTTGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCC
582 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
1613765 TCCGAAATAATTTTAAAAAAATACCGAACCACAAAAAGTTTCAAAAATCTTAAAAAATAGAAAAC
647 TCCGAAAAAATTTT-AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
1613830 GAGTCATCTTGCCACT-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
711 GAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
1613894 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTG-GCTAAACCCACCTACCACCCTATCGAT
775 TAAAAATGGCATTGGCACACAGAAATATGAAGATTTGCG-T-----CA--T------C--TCG-T
** * * * * *
1613958 CCACGGCTTGGGATCCCATCTCTCAGGCCGACGTAGTGCCCATTCACCCACT
823 ------C------T--C-T-T-T--GGCCGGTGTAGTGCCCGTCCGCCCGCC
* * ** * * * *
1614010 CGCCTGCTCGTTTCGTCGATTGGCTTAGGCATATAGAGTTCATTCCTAATGTAAGATTGGACC-A
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * * *
1614074 GATGGAGCGTTGCAGTAGTAGGATC-AGCAGCACGT-AGAGAGGGACCCGATCGATCCTCAGCTT
66 -ATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTT
* * ** * ** * * * *
1614137 ACGGATCCCATCCCACTGGCCGGTTAAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
1614202 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCAT-CG-AG---A-T-CTAG-CT--GATCAGACC--A-CGAGG
* * *
1614267 GTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCATCGGGGCACCA
246 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
1614332 TCACCGGAGCATCGCAGGAGAACTTGTCCGGCAGCATTGGGGTTCCGACGATCGGGGGGACTGGG
311 TCGCCGGAGCATCGC-GGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGG
* * *
1614397 GGGGTGTGCGCACATGACGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCT
375 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1614462 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGT
440 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
1614527 AGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTAT-G
505 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCG
* * *
1614590 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACTAGGTTTGG
569 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** * *
1614655 GGACAAAACTCCTT-CGAAAAAATTTTTAAAAAAT-CTGATTCGCAAAAAGTTTCAAAAATTAAT
634 GGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA-TCAT
* * * **
1614718 TAAAAATTGAAAACGAGTCGTCTTGCCATGAAACATCGTGTGAAGGCTTAAGGGACCATTGTATG
697 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
1614783 AATTTGCAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGCTGAAACCCACCTAC
762 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT-T--TG------------
* *
1614848 CACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGAG-GTAGTGCCC-TCCCGCCCG
812 ----C----G-T-CA-----T---C-T--CGTCTCTTTGGCCG-GTGTAGTGCCCGT-CCG--C-
1614911 CCTGCC
851 CC-GCC
* * ** * *
1614917 CGCCCACCCGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGA
1 CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * ** *
1614982 CCGGA-CTAAGGGTTGTGGCAGCAGGATCGGCAGCAC-GCAGAGGGGCACCCGGGAGATCCCCAA
62 CCGAATC-GAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAG
* * * * *
1615045 CTTCCGCATCCCGGCCCTCTGGCC-AGCTGAGTGCCCGCACGCTCGTTTCCTGGGTTGACTTAGG
126 CTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
1615109 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACC
190 CATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAG---A-T-CTAG-CT--GATCAGA-C-CA-C
* * * * * *
1615174 GAGGGTTGCGACAGCACATGCTGGGCTCTGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGAGGC
242 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * *
1615239 ACCA-CTGCC-G-G-A-----GAG--CCTGACCGGTTGCATTGGGGTTCCGGCGATC-AGGGGGC
307 ACCATC-GCCGGAGCATCGCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGC
* *
1615292 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCACCCTA
371 T-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1615357 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
435 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1615422 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACA-TTTGTTTCAAATGGTCAC----T-TTGAGTA
500 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTT--GTA
* * * *
1615481 CCCTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAGCA
562 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* **
1615546 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACGAAAAGTTTTGAAA
627 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAA
*
1615611 AT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCAA
692 ATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-A
* * *
1615675 TT-TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
755 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATTTGCGT-----
* * * * ** **
1615739 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
815 CA--T------C--TCG-T-CTC--TTTG-G---CCGGTGT-AGT-GCC--CGT-CCGCCCGCC
* * ** * *
1615803 CGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACAGG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * *
1615868 ACCGAGGGTTGCGGTAGCAAGATCGGCAGCACA-CAGAAGGGGACCCGATCGATCCCCAACTTGT
66 ATCGAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTTGC
* * * ** *
1615932 GCATCCCGCCCATCTGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTGCGACATACG
131 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* *
1615997 GAGTTCATTCCCAGTC----CA---AGAT-T-G--GACCAGACCA--AGGGTTGCGGTAGCACAT
196 GAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCACAT
* *** * ** *
1616049 GTTGGGCTCGGGCATGTGCTGGTGCTATATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCAC
261 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-G
* *** * * *
1616114 CGGAAAACCTGACCGATGGCATTGGGGTTCCGGCGATTGGGGGGGC-CGGGGGGTGTGCGCACAT
325 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACAT
* * *
1616178 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGCGA
390 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * * *
1616243 ACTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGTCAGTGGCCATTAAAGTGTC
455 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * * *
1616308 TTAAATGGGGACATTTTTTTCGAGTGGTCAC-AAATCTTGAACACTTTGAGTTTTTAGCTGAATT
520 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
1616372 TTTTAGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCC
585 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * **
1616436 AAAAAAATTTTAAAAAATACTGAACTACAAAAAAATTCAAAAATCATGAAAAATAGAAAACGAGT
650 GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
1616501 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
715 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
1616566 ATGGTATTGTCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGG
780 ATGGCATTGGCACACAGAAATATGAAGATTTGCGT-----CA--T------C--TCG-T-CTC--
* ** * * ** *
1616631 CTTGCGCATCCCATCTCTCTGGCTGACGTAGTGCCCGCCCGTC
826 TTTG-G-----C--CGGTGTAG-TG-C-CCGT--CCGCCCGCC
* * * * *
1616674 CGCCCGCTCATTTCGGCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAA
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * *
1616739 ACCGAGGGTTGCGGCAACAGGATCTG-TAGCAC-GCAGAGGGGGACCCGGCCGATCCCCGGCTTG
66 ATCGAGGGTTGCGGCAGCAGGATC-GACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTTG
* * * *
1616802 TGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* ***
1616867 GGAGTTCATTCTCA-TCTAAG-ATCG-GA-C---C-G----GA-C-CGAGGGTTATAGCAGCACA
195 GGAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCACA
* * * ** * * *
1616918 TGCTGGGCTCGAGCATGTGCCGATGTTGCATTTTTCTTCGTCAGGGCACCAGCGTCGGAGCATCG
260 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * * *
1616983 TCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACA
325 -CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACA
** *
1617048 TGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTGAG
389 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
* *
1617113 AACTCACACCCCCTTAAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAGGTG
454 AACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * ** *
1617178 TCTGAAATGGGAACTCTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAACTTTTAGCTAAA
518 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
1617243 TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
583 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** *
1617308 CC-AAAAAACATTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACG
648 CCGAAAAAA-TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
1617372 AGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATA
712 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
1617437 AAAATGGCATTGGCACGCAGAAATATAAAGATGTACCTAAACCAACCTACCACCTTATCGATCCA
777 AAAATGGCATTGGCACACAG-AA-AT----ATG-----------A---A-GA---T-T---T---
* * * **
1617502 CAGCTTGTGCATCTCGTCTCTCTGGCCGGCGTAATGCCCACCCGCCCGCC
811 --GC--GT-CATCTCGTCTCTTTGGCCGGTGTAGTGCCCGTCCGCCCGCC
** * * * **
1617552 CGCTAGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCCA-TCTAATATCGGATTG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCG
* * * ** ** * * * * *
1617616 GA-CAGAAGGCTGCGATAGCAATATCGACAGCACA-CAGAGGGGGACCAGGCCGAACCTCGGCTT
65 AATC-GAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTT
* * * *
1617679 GCGCATCCCGCCCCTCTGGTCGGCTGAGCGACCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
129 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * *
1617744 GGGAGTTCATTCCCAGTCTAAG-ATC-AGA-C---C-G----GA-C-CGAGGGTTCCGACAGAAC
194 CGGAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCAC
* * * *
1617796 ATGCTGGGCTCTGGCATGTGCTGGTCCCACATTTTTCTTCGTC--GG-AGCAT---C---G---C
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * * * * *
1617849 -CGGAGAACCTGACCGACAGCATCGGGGTTTCGATGATCGGGGGGGCCGGGGCAGGTGTGCACAC
324 GCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGGG-GGGTGTGCGCAC
*
1617913 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGA
388 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* *
1617978 AAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
453 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1618043 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
518 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
1618108 TTTTTTTTTTGCATGCCAACAAAAATATAAGGATCACATCTACCAAGTTTGCGGCCAAAACTCCA
583 -TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
1618173 TCCAAAAAAATTTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATG
647 TCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * * *
1618238 AGTCATCTTGCCATGAACCTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATA
712 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
***
1618303 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCTTATCGATCCA
777 AAAATGGCATTGGCACACAGAAATATG-A-A----G---------------A--TT-T-G-----
* * * **
1618368 CGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCG-CCAGCCCGCC
812 C-G--T---CATCTCGTCTCTTTGGCCGGTGTAGTGCCCGTCC-GCCCGCC
* * * * *
1618418 CGACCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATTGGACCGG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* ** * *
1618483 A-CTGAGGGTTGCGGCAGCAGGATTGGTAGCAC-GCAGAGGGGGACCCGGTCGATCCCCGGCTTG
66 ATC-GAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTTG
* ** * * *
1618546 TGCATCCCGCCCCTCTGGCC-AGCTGAGCGCCTACAAGCTCGTTTCATGGGTTGACTTAGGCATA
130 CGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
**
1618610 CGGAGTTCATTCCCAGTCTAAG-ATCG-GA-C---C-G----GA-C-CGAGGGTTATGGCAGCAC
194 CGGAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCAC
* *
1618662 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGTGG-ACCATCGCCGGAGCATC
259 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * * *
1618726 GTCCGAGAACCTGACCGACGGCATTGGGGTTCCAACGATC-GGGGGGTTCGGGGGGGTGTGCGCA
324 G-CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCT-GGGGGGGTGTGCGCA
* * **
1618790 CATGATATGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCA
387 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
*
1618855 AAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
452 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
1618920 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGA
517 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * * ** *
1618985 ATTTTCTTATGCATGCCAACAAAAATGCAAGGATCACATCTTCCAAGTTTCAGGCCAAAACACCT
582 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * *
1619050 TCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACA
647 TCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
1619115 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
712 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * * ** * * *
1619180 AAAATGGCATTGGCTCATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCA
777 AAAATGGCATTGGCACACAGAAATATGAAGATTTG-C-G---TCATCT-CGTCTCT-TTG--GC-
**
1619245 CGGCT-TACGCAACCCGCCTCTCTAGCCGACGTAGTGCC
832 CGG-TGTA-G-TGCCCG--TC-C--GCC--C-----GCC
* * ** * * *
1619283 CGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTGAATCTTAGATTGGA
1 CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
1619348 CC-AGACCGAGGGTTACAGTAGCAGGAT---TAGCAGCATGCAGAGGGGGACCCGGTCGATCCCC
62 CCGA-ATCGAGGGTTGCGGCAGCAGGATCGACAGCA-CAT-CAGAGGGGGACCCGGTCGATCCCC
* * ** * *
1619409 AGCTTGCGAATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
124 AGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* **
1619474 GCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTCAGATCAGATGAGAC
189 GCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAG---A-TCT-AG-CT--GATCAGA--CCAC
* * *
1619539 TGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGG
242 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
1619604 TACCATCGTCGGAGCATCGTCGGAGAACCTGATCGG-AGGCATTGGGGTTCCGGCGATCAGGGGG
306 CACCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCA-GCATTGGGGTTCCGACGATC-GGGGG
* *
1619668 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCC
368 GGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
1619732 TATCCCTCATCAAACCTTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
433 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
1619797 TGCTAGTAGCCATTAAAGTGTCTGAAATGGGG-CTCTTTTTTCAAATGGTCACAAAATCTTGTAC
498 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
1619861 ACTTAGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAATAAAAATACAAGGATCACGTCTACCAA
563 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * **
1619926 GTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAGTCCCGAACCGTAAAAAGTTTCAAAAA
628 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA
*
1619991 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
693 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * **
1620056 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC-CAA
758 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATTTGCGTCATCTCGT
**** * * * * * **
1620120 C-CTACAACC-CTATCGAT-CCACGGCTTGCGCATCC
823 CTCTTTGGCCGGTGTAG-TGCC-CGTC-CGC-CCGCC
* * * * *** * * *** * *
1620154 CGTCTTTCTGGC-CTGTGTAGTGCCCGCCCGCCT-GCCCGCCCGACTGTTCATT-TC-GTC---G
1 CG-C---C-CGCTC-GTTTCGT--CGGTTGGCTTAGGCATACGGA--GTTCATTCCCAGTCTAAG
* * * * *
1620212 ATTGG-CTTAGGCATACGGAGGGTTGCGGCAGTAGGAT---CAGCACCAGGCAGAGGGGGACCCG
56 ATCGGAC---CGAAT-C-GAGGGTTGCGGCAGCAGGATCGACAGCA-CA-TCAGAGGGGGACCCG
* * * * ** * *
1620273 GTCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGATTGAGCGCCCTCACGCTTGTTTTGTGC
114 GTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGG
* *
1620338 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTTAG-ATCG-G----A-CTG----GACCA--A
179 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGA
* * *
1620390 GGGCTGCGGTAGCACATG-TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CTGGGGCA
244 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCA
* ** * ** *
1620453 TCATCGCCGGAGCATCGTCGGAGAATGTAACCGGGTGCATTGGGGTTCCGCCGATCGGGGGGGC-
308 CCATCGCCGGAGCATCG-CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCT
**
1620517 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
372 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
1620582 CCTCATCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAAGTATGCTGCC
437 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1620647 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
502 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
1620712 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTT
567 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
1620777 TGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCA
631 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCA
* * * * * *
1620842 TGAAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCACTGTCT
696 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1620907 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
761 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA------T---------T-
* * * * **
1620972 CCACCCTATCGGTCCATAGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCTCGCCCGCCCAT
810 ------T-GC-GT-CAT--C-T-CG--T--C-TCT-T-TGGCCGGTGTAGTGCCCGTCCGCCCGC
1621037 C
855 C
* * * *
1621038 CGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCCT-AGGTCAGACC-
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCGGACCG
* * * ** *
1621101 AGATCAAGGGTTACAGCAGCAGGATCGATGGCACA-CAGAGGGGGACCCGATCGATCCCC-GACT
65 A-ATCGAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAG-CT
* *
1621164 TGCGCATCCCGCCCCTTTGGCC-AGCTGAGCGCCCGCACGCTCATTTCGTGGATTGACTTAGGCA
128 TGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * *
1621228 TACAGAGTTCATTCCCAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
192 TACGGAGTTCATTCCCAGTCTAAGC--ATCGAG---A-T-CTAG-CT--GATCAGACC--A-CGA
* * *
1621293 GGGTTGCGGCAGCACATGCTGGGCTGGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCAC
244 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
1621358 AATCGCCGGAGCAT--C---G--CC--A---G--GCATTGGGGTTCCGACGATCGGGGGGGTTGG
309 CATCGCCGGAGCATCGCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGG
* * *
1621409 GTGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCC
374 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
1621474 TCATCAAACCTTGAGAACTCACACCCACTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
439 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
1621538 TAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
504 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
1621603 ACTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACAAAGTTTGG
569 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
1621668 GG-CTAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGA
634 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
* *
1621732 AAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAA
699 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
1621797 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCGAAAGACACCTACCA
764 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA--T-------------T----
* * * * *
1621862 CCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCC
810 ---T-GCG-T-CA--TC-T-CG--T-CT--CT-T-TGGCCGGTGTAGTGCCCGTCCGCCCGCC
* *
1621925 CGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCGGACCG
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCG
* * ** ** * * *
1621989 GA-CTGAGGGTTGCGGCAGCAAGATCGGTAGCATGT-AGAAGGGGACCCAGTTGATCCCC-GACT
65 AATC-GAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAG-CT
* * ** * * * ** * *
1622051 TACGCATCCTGTGCTTCTGGCCGGCTGACCGCCCGCACGCTTGTTTC---AG-T--C-TAAGCAT
128 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
*
1622109 ACGGAGTTCATTCCCAGTCT----A---AGAT-T-G--GACCAGACCA--AGGGTTGCGGCAGCA
193 ACGGAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCA
* **
1622161 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTAGAGCAT
258 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * * * * *
1622226 CGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGAGAGGGCCGGAGGGGGTGTGCGC
323 CG-CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGG-GGGGGTGTGCGC
* * ** *
1622291 ACATGATGTGTGATGGGTGTTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
386 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* * *
1622356 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAG
451 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
1622421 TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTACCT
516 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCT
* * * * ** * * *
1622486 GAAATTTTTTGTCCATG-CAAGAAAAATACAAGGATCACGCCTAAAAAGATTGGGTCTAAAACTC
580 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * **
1622550 CTTTCGAAACAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-AGAAAATCATGAAAAATAGAAA
645 CTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA-AAAATCATGAAAAATAG-AA
* * * *
1622614 AACGAGACGTCTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATTTTATGAATTTACAAGC
708 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
1622679 CATAGAAATGGCATTGGCATGCAGAAATATGAAGCTGTCCCTAAACCCACCCTACCACCCTATCG
773 CATAAAAATGGCATTGGCACACAGAAATATGAA---G-------------------A---T-T--
* * * **
1622744 ATCCACGGCTTGTGCATCCCGTCTCTCTT-GTCGGCGTAGTGCCCG-CCTGCTTGCCC
810 -T-----GC--GT-CATCTCGTCTCT-TTGGCCGGTGTAGTGCCCGTCC-GCCCG-CC
* *
1622800 CGCCCGCTCGTTTCGTCGGTT-GCTTAGGC-TATGGAGTTCATTCCCAGTCTAAGATCAGACC-A
1 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * *
1622862 AACTAAGGGTTGTGGCAGCAGGATCGACAG--CATGCAAAGGGGGACCCAGTCGATCCCC-GCTT
66 ATC-GAGGGTTGCGGCAGCAGGATCGACAGCACAT-CAGAGGGGGACCCGGTCGATCCCCAGCTT
* * *
1622924 GCGCATTCCC-CGCCCTTTGGCC-AGCTGACCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
129 GCGCA-TCCCGC-CCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
** * *
1622987 ATATAGAGTTCA-TCCTAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAGACCAGATCGA
191 ATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAG---AT-CTAG-CT--GATCAGACC--A-CGA
* * *
1623051 GGGTTGCGGCAGCACATG-TCGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCA
244 GGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * *
1623115 CCAT---C---G--T--CGGAGAACTTGACCGGCAGTATTGGGGTTCTGATGATCGGGGGGTC-G
308 CCATCGCCGGAGCATCGCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTG
* * *
1623169 GGGGGAGTGGGCGCACAAGATGTGCAATGGGTGCT-GTACTT-GCCCTTATATTGGCCCCCTATC
373 GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** * *
1623232 CCTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
437 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
** *
1623297 AGTAAACATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT
502 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
1623362 CGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAAGATCATGTCAAACAAGTTT
567 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
1623427 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATACCGAACCACAAAAAGTTTTAAAAATCAT
632 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT
* *
1623492 GAAAAATAGAAAACGAGTCGTCTTG-CACTAAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
697 GAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
1623556 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
761 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
1623604 GTGCCTAACC
Statistics
Matches: 8692, Mismatches: 1198, Indels: 1168
0.79 0.11 0.11
Matches are distributed among these distances:
839 5 0.00
840 110 0.01
841 93 0.01
842 163 0.02
843 138 0.02
844 2 0.00
845 58 0.01
846 107 0.01
847 155 0.02
848 211 0.02
849 1 0.00
850 3 0.00
851 7 0.00
852 2 0.00
853 8 0.00
854 75 0.01
856 61 0.01
857 7 0.00
858 6 0.00
859 15 0.00
860 7 0.00
861 6 0.00
862 6 0.00
863 1 0.00
864 9 0.00
865 168 0.02
866 888 0.10
867 237 0.03
868 86 0.01
869 204 0.02
870 214 0.02
871 421 0.05
872 176 0.02
873 294 0.03
874 301 0.03
875 38 0.00
876 23 0.00
877 326 0.04
878 399 0.05
879 329 0.04
880 56 0.01
881 16 0.00
882 182 0.02
883 12 0.00
884 10 0.00
885 9 0.00
886 22 0.00
887 358 0.04
888 44 0.01
889 262 0.03
890 339 0.04
891 16 0.00
892 29 0.00
893 39 0.00
894 8 0.00
895 322 0.04
896 149 0.02
897 58 0.01
898 203 0.02
899 42 0.00
900 187 0.02
901 38 0.00
902 123 0.01
903 142 0.02
904 255 0.03
905 117 0.01
906 7 0.00
907 6 0.00
908 2 0.00
909 2 0.00
910 3 0.00
911 257 0.03
912 2 0.00
916 1 0.00
921 2 0.00
922 6 0.00
923 2 0.00
925 2 0.00
926 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (855 bp):
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
ATCGAGGGTTGCGGCAGCAGGATCGACAGCACATCAGAGGGGGACCCGGTCGATCCCCAGCTTGC
GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATCGAGATCTAGCTGATCAGACCACGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC
GGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACACAGAAATATGAAGATTTGCGTCATCTCGTCTCTTTGGCCGGTGTAGTGCCCG
TCCGCCCGCC
Found at i:1614227 original size:26 final size:26
Alignment explanation
Indices: 1614197--1614249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1614187 GTTGACTTAG
*
1614197 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1614223 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1614249 G
1 G
1614250 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1615144 original size:26 final size:26
Alignment explanation
Indices: 1615108--1615160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1615098 GTTGACTTAG
1615108 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1615134 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1615160 G
1 G
1615161 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1627282 original size:899 final size:907
Alignment explanation
Indices: 1625708--1627666 Score: 2734
Period size: 899 Copynumber: 2.2 Consensus size: 907
1625698 AAGGTTGCGA
* ** * * * * *
1625708 CAGCAGGATCGATAGCACATGGAGGGGGACCCGACCGATTCTCGACTTGCGCATCCAGCCCCTCT
1 CAGCAAGATCGATAGCACAAAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCAGCCCCTCT
* * * *
1625773 GGTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTTACCTAGGCATACGGAGTTCATTCCCAGT
66 GGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
1625838 CTAAGCATACGGAG-TCATTCCCAGTCGTCAGATCAGACCAGATCGAGGGGTTTGCGGGAGCACC
131 CTAAGCATACGGAGTTCATTCCCAGTCGTAAGATCAGACCAGACCGA-GGGATTGCGGGAGCACC
* * *
1625902 ATGTTTGGGCATTGGGCATGTGTTTTGGTGCCCACATTTTTCTTCGGCCGGGGCACCATGCGCTA
195 ATGTCTGGGCATCGAGCATGTG-TTTGGTGCCCACATTTTTCTTCGGCCGGGGCACCATGCG--A
* *
1625967 GAGCATCATCGGAGAACATGCACCGGCGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTG
257 GAGCATCACCGGAGAACATGCACCGACGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTG
* *
1626032 GTGGACGCACATGATGTGCGATGGGTGCTGCTACCTGGCCCTTATATTGGCCCCCTATCCCTCAT
322 GTGGACGCACATGATGTGCGATAGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
1626097 CAAACCTTGAGAACTCGCACCCCGTTAAAGAGCATTTGAGGTTTTACGGGTTTGCTGCCAGTAGC
387 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
* * *
1626162 CATTAAAGTGTCTGAAATGGGGACCTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTT
452 CATTAAAGTATCTAAAATGGGGACCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
1626227 TTAGCTGAGTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
517 TTAGCTGAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* *
1626292 AACTCCTTTCGAAAAAATTTTAAAAAATCCTGAGGCACAAAAAGTTTCAAAAATCGTGAAAAATA
582 AACTCCTTTCGAAAAAAATTTAAAAAATCCTGAGCCACAAAAAGTTTCAAAAATCGTGAAAAATA
* * * *
1626357 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
647 GAAAACAAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA
* * *
1626422 AGCCATAAAAATGGCATTGGC-GTACAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTA
712 AGCCATAAAAATGGCATTGGCAG-ACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCGA
* * * * * *
1626486 TCGATCCACGGCTTGCGGATCTCGTCTCTCTGGCCAGTGTAGTGCCCGCCTG-CCTGCTCGCTTG
776 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGTCC-GCCCACTCG
* **
1626550 TTTCATCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTTGATA-GAGGG
840 TTTCAT-CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CCGA-ACGAGGG
1626614 TTACAG
902 TTACAG
* * * * * *
1626620 TAGCAAGATTGGTAGCACAAAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCTGCCCTTCT
1 CAGCAAGATCGATAGCACAAAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCAGCCCCTCT
* * * * * *
1626685 GGTCGGTTGAGCACCCGTACACTCGTTTCGTTGGTTGACTTAGACATGCAGAGTTCATTCCTAGT
66 GGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
1626750 CTAAGCATACGGAGTTCATTCCCAGTC-TAAGATCGGATCAGACCGA-GGATTGCGGTAGCA-CA
131 CTAAGCATACGGAGTTCATTCCCAGTCGTAAGATCAGACCAGACCGAGGGATTGCGGGAGCACCA
** *
1626812 TG-CTGGGC-TCGAGCATGTG-TTGGTG-CCGTATTTTTCTTC-GTCGGGGCACCATTGTCG-GA
196 TGTCTGGGCATCGAGCATGTGTTTGGTGCCCACATTTTTCTTCGGCCGGGGCACCA-TG-CGAGA
* * *
1626871 GCATCGCCGGAGAACCTG-ACCGACGGCATTGGGGTT-TGACGATCGGGGGGGCCGGGGGGT-GT
259 GCATCACCGGAGAACATGCACCGACGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGGT
* * * *
1626933 -G-TGCACATGATGTGCGATAGGTGCTGGTACTTGACCCTTATATTGTCCCCCTATCCCTCATCA
324 GGACGCACATGATGTGCGATAGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCATCA
*
1626996 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCA
389 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
* *
1627061 TTAAAGTATCTAAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
454 TTAAAGTATCTAAAATGGGGAC-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
1627126 TGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
518 TAGCTG-AGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* *
1627191 AACTCCTTTCGAAAAAAATTTCAAAAATCCT-ATGCCACAAAAAGTTTCAAAAATCTTGAAAAAT
582 AACTCCTTTCGAAAAAAATTTAAAAAATCCTGA-GCCACAAAAAGTTTCAAAAATCGTGAAAAAT
*
1627255 AGAAAACAAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTACTGTATGAATTTAC
646 AGAAAACAAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAC
* * * *
1627320 AAGCCATAAAAATGGCATTTGCAGGCAGAAATATAAAGATGTGCCTAAACCCACCTATCGCCCGA
711 AAGCCATAAAAATGGCATTGGCAGACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCGA
*
1627385 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCCACTCGT
776 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGTCCGCCCACTCGT
* ** *
1627450 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTG
841 TTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTA
*
1627515 CGG
905 CAG
* * * *
1627518 CAGCAGGATCGATAGCACGTAA-AGGGGGACCCGGTCGATCCCTGGCTTGTGCATCCAGCCCCTC
1 CAGCAAGATCGATAGCAC-AAAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCAGCCCCTC
* * *
1627582 TGGTCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
65 TGGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
1627647 TCTAAGCATACGGAGTTCAT
130 TCTAAGCATACGGAGTTCAT
1627667 ATCTCCGTAT
Statistics
Matches: 924, Mismatches: 112, Indels: 36
0.86 0.10 0.03
Matches are distributed among these distances:
896 1 0.00
897 137 0.15
898 224 0.24
899 292 0.32
900 26 0.03
901 17 0.02
902 17 0.02
903 11 0.01
904 14 0.02
905 8 0.01
907 9 0.01
908 5 0.01
909 4 0.00
910 12 0.01
912 135 0.15
913 12 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (907 bp):
CAGCAAGATCGATAGCACAAAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCAGCCCCTCT
GGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCGTAAGATCAGACCAGACCGAGGGATTGCGGGAGCACCA
TGTCTGGGCATCGAGCATGTGTTTGGTGCCCACATTTTTCTTCGGCCGGGGCACCATGCGAGAGC
ATCACCGGAGAACATGCACCGACGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGGTGG
ACGCACATGATGTGCGATAGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
AAAGTATCTAAAATGGGGACCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
CCTTTCGAAAAAAATTTAAAAAATCCTGAGCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACAAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCAGACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCGATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGTCCGCCCACTCGTTTCAT
CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTACAG
Found at i:1628085 original size:159 final size:159
Alignment explanation
Indices: 1627814--1628169 Score: 502
Period size: 159 Copynumber: 2.2 Consensus size: 159
1627804 TCGTTTTATC
* * * * * *
1627814 GGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCCATAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGACAGAG
*
1627879 CAGGATCGGTAGCACGCAGAGGGGGACCCAATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
66 CAGGATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
** *
1627944 CGGTTGAGCACCCGCATGCTAATTTCATG
131 CGACTGAGCACCCGCACGCTAATTTCATG
*
1627973 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATC-AAGGGTT-ACAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAA-GGTTGACAG
* * * *
1628035 CGACAGGATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGGTTGCGCATCCCGCCCTTTT
64 AG-CAGGATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** *
1628100 GGTCGACTGAGCACCCGCACGCTCGTTTTATG
128 GGTCGACTGAGCACCCGCACGCTAATTTCATG
1628132 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1628170 CGTACGGAGT
Statistics
Matches: 176, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
158 6 0.03
159 170 0.97
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGACAGAG
CAGGATCGGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGT
CGACTGAGCACCCGCACGCTAATTTCATG
Found at i:1628182 original size:26 final size:26
Alignment explanation
Indices: 1628146--1628195 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1628136 GACTTAGGCA
*
1628146 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
1628172 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
1628196 ATCGAACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:1629374 original size:158 final size:159
Alignment explanation
Indices: 1629040--1629394 Score: 408
Period size: 158 Copynumber: 2.2 Consensus size: 159
1629030 TCATTTGGTC
* * ** * ** *
1629040 GGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTATGGCAG
1 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACAGCAA
* *
1629105 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCATATCCTGCCCCTCCAGC
66 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCCAGC
* * * * *
1629170 CGGCTGAGCACCTGCACGCTCATTTCGTG
131 CGACTCAGCACCCGCACACTCATTTCATG
* *
1629199 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGAA-TCGAGGGTTGCAGCA
1 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACT-GAGGGTTACAGCA
* * * ** * * ***
1629263 ACAGGATTGGCAGCATGCAGA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGG
65 ACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCCAG
* * *
1629327 CTGACTCAGCACCCGCACACTCGTTTTATG
130 CCGACTCAGCACCCGCACACTCATTTCATG
*
1629357 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAG
1629395 CATACGGAGT
Statistics
Matches: 164, Mismatches: 31, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
158 94 0.57
159 70 0.43
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACAGCAA
CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCCAGC
CGACTCAGCACCCGCACACTCATTTCATG
Found at i:1629405 original size:26 final size:26
Alignment explanation
Indices: 1629368--1629420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1629358 GTTGACTTAG
1629368 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1629394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1629420 G
1 G
1629421 ATCGGACGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1631007 original size:24 final size:24
Alignment explanation
Indices: 1630974--1631021 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
1630964 GTTTGGAGCA
1630974 ATCCCCGGCATGCACATCCCGCCC
1 ATCCCCGGCATGCACATCCCGCCC
*
1630998 ATCCCTGGCATGCACATCCCGCCC
1 ATCCCCGGCATGCACATCCCGCCC
1631022 CTCTGGCCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.52, G:0.17, T:0.15
Consensus pattern (24 bp):
ATCCCCGGCATGCACATCCCGCCC
Found at i:1631121 original size:26 final size:26
Alignment explanation
Indices: 1631069--1631121 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1631059 GTTGACTTAG
*
1631069 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1631095 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1631121 G
1 G
1631122 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1632902 original size:26 final size:26
Alignment explanation
Indices: 1632872--1632924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1632862 GTTAACTTAG
1632872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1632898 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1632924 G
1 G
1632925 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1633802 original size:26 final size:26
Alignment explanation
Indices: 1633766--1633818 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1633756 GTTAACTTAG
1633766 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
1633792 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1633818 G
1 G
1633819 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1634379 original size:895 final size:892
Alignment explanation
Indices: 1631012--1635341 Score: 5327
Period size: 900 Copynumber: 4.9 Consensus size: 892
1631002 CTGGCATGCA
* * * *
1631012 CATCCCGCCCCTCTGGCCTGCTGAGCACCCACATGCCCGTTTCATGGGTTGACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * *
1631077 AGTTCATTCCCAATTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
** * * * * *
1631142 GCGGTACCACATGCTGGGCTCGAGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCG
131 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
** ** * *
1631207 TTGGAGCATCGTCGGAGAACCTGACCGATGACATTTGGGTTTCGACGATCGGGGGGGCCGGGGGG
196 CCGGAGCATCGTC-GAGAACCTGACCGGCGGCA-TTGGGTTCCGACGATCGGGGGGG-CGGGGGG
*
1631272 TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
258 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
1631337 AAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
323 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1631402 ATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
388 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
* * *
1631467 TTAGCTGAATTTTTTTATGCACGGCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
453 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
1631532 AAAATCCTTCTGAAAAAATTTTAAAAAATCTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
518 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
* * * *
1631597 AGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTAA
583 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * ** *
1631662 AAGCCATAAAAATCGCATTGGCACGAAGAAATATGAAGATGTGAATAAACCCACCTACCAACCTA
648 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
1631727 TCGAGCGACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCCTGC
713 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGT----GCCCGCCCG--C-CC-GC
* * *
1631792 TCATTTCATCGGTTGGCTTA-GCA-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGATCGA
770 TCGTTTCGTCGGTTGGCTTAGGCATATA--GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
*** ** ** **
1631855 GGGTTGTGGCAGCAGGATCTACAGCACATAGAGGGGGACCCGACCGATCCCC-AGCTTGCG
833 GGGTTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGA-CTTGCG
** * *
1631915 CATCCTACCCCTCTGGCCGGTTGAACACCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * * * *
1631980 AGTTCATTCCCAGTCGAAGCATACGAATTTTATTCCCAGTCTAAGATCAGAACAGA-TCAAGGGT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGT
* *
1632044 TGCGACAGCACATGCTGGG-TCGGGCATGTGTTGGTACCACATTTTTCTTCGTTGGGGCACCATC
130 TGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * * *
1632108 ACCCGAGCATCGTCGGAGAACCTGACAGGCGGTATTGGGGTTTCGATGATCGGGGGGGTTGGGGG
195 ACCGGAGCATCGTC-GAGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGG-CGGGGG
* *
1632173 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTCAT
257 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
1632238 CAAACCTCGAGAACTCACATCCCCTTAAAGAGCACTTGAGATTTTATAGGTTTGCTGCCAGTAGG
322 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
1632303 CATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
387 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTT
* * *
1632368 TTTAGCTGAATTTTTTTTTGCATGGCAACAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCC
452 TTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
1632433 AAAACTCCATCCAAAAAAATTTTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAA
517 AAAACTCCTTCCGAAAAAATTTT--AAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
* * *
1632498 AATAGAAAACGAGACGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATT
580 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
1632563 TAGAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
645 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
1632628 CTATCGATCAACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCT
710 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTA--G--TGCCCGCCCGCCCGCT
* * * * * * * *
1632693 TGTTTCGTCGATTGGCTTAGGCATACAAAGTTCATTCCCAGTGTAAGATCGGACCGGATAGAAGG
771 CGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
** * * *
1632758 TTGCAACAGCAGGATTAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCAACTTGCA
836 TTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* * *
1632815 CATCCCACCCCTCTGGCCGGCTGAACACCCTCACGCTCGTTTCATGGGTTAACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * *
1632880 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
* * * *
1632945 GCGATAGCACATGCTCGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
131 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* * *
1633010 TCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGTGAGGGGGG
196 CCGGAGCATCGTCG-AGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGG-G-CGGGGG
*
1633075 GTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTAT-CCTCAT
257 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
1633138 CAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGC
322 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * ** *
1633203 CATTAAAGTATCTAAAATGGGTACACCTTTGGCAAATGATCACAAAATCTTGTACACTTTAAGTT
387 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTT
*
1633268 TTTAGCTGAATATTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
452 TTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * * *
1633333 AAAACTGCTTCCGAAAAAATTTTAAACAATCCCGAACAGCAAAAAGTGTCAAAAATCATGAAAAA
517 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA
* * *
1633398 TAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
1633463 CAAGCTATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCT
647 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
1633528 ATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGTCGAAATAGTGCCCGCCCGCACGCTCGTTTC
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTC
* * **
1633593 GTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGG
777 GTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAA
* * * * **
1633658 TAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTTTG
842 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* * * * * * ** *
1633709 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGTTCATTTTGTGGGTTAACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
1633774 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGATCAGACTGAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
* * * * *
1633839 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCA
131 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* *
1633904 CCGGAGCATCGTCAGAGAACCTGATCGGCGGCATTGAGTTCCGACGATCGGGGGGGCCGTGGGGG
196 CCGGAGCATCGTC-GAGAACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGG-CG-GGGGG
* * *
1633969 TGTGCACACATGATTTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
258 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *
1634034 AAACCTCTATAACACACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTCCTGCCAGTAGCC
323 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1634099 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGATCACAAAATCTTGTACACTTCGAGTTT
388 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
** * * * *
1634164 TTAGCAAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAGTTTGGGTCCA
453 TTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
1634229 AAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
518 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
*
1634294 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
583 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** *** * *
1634359 AAGCCATAAAAATGGCATTGGCACATAGAAATCCAAAGAAGTGCCTAAACCCACCGACCACCCTA
648 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
1634424 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GATGTAGTGCCTGCCCGCCCACCCGTCCG
713 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA-GTA--G--TGCCCG----CCCGCCCG
* * * * * * *
1634488 CTTGTTTCATCGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAG
769 CTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* *
1634553 GGTTGCAACAGCAAGATCGGCAGCACGCAGAGGGGGA-CC---CG------G-CTTGTG
834 GGTTGCAACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
** * * * *
1634601 CATCCCGCCTATCTGGCCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG
1 CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * * *
1634666 TGTTCATTCTCGGTGTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGA-TCGAGGGT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGT
* * * *
1634730 TGCGCCAGCATATTCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGAGGCACCAT-
130 TGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
** * *
1634794 --C---G--TCG--GAGAAATTGACCGACGGCATTGTGGTTCCGACGAT--------CAGGGGGT
195 ACCGGAGCATCGTCGAGAACCTGACCGGCGGCATTG-GGTTCCGACGATCGGGGGGGCGGGGGGT
*
1634842 TTGCGCACATGATGTGCGA----TG--GG----T-G--C------TGG---------CC-C-T--
259 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1634875 ---CT--AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
324 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
1634935 TTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGATCACAAAATCTTGTACACTTTGAGTTTT
389 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTT
* * * *
1635000 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGTCCAA
454 TAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
1635065 AACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAATTTTTAAAAATTGTGAAAAATA
519 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATA
* * * *
1635130 GAAAACGAGTCATCTTCCCACGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACA
584 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
1635195 AGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
649 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
1635260 CGATCCAAGGCTTGCTCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCTTTTCGT
714 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTCGT
1635325 CGGTTGGCTTAGGCATA
779 CGGTTGGCTTAGGCATA
1635342 CGGATGTGTG
Statistics
Matches: 3002, Mismatches: 394, Indels: 138
0.85 0.11 0.04
Matches are distributed among these distances:
827 29 0.01
831 6 0.00
833 1 0.00
835 381 0.13
836 1 0.00
837 2 0.00
842 1 0.00
843 1 0.00
844 2 0.00
853 3 0.00
859 1 0.00
861 1 0.00
862 1 0.00
866 1 0.00
868 2 0.00
872 22 0.01
873 1 0.00
881 18 0.01
882 11 0.00
884 3 0.00
886 1 0.00
889 1 0.00
891 1 0.00
892 171 0.06
893 67 0.02
894 328 0.11
895 385 0.13
896 1 0.00
897 1 0.00
898 190 0.06
899 8 0.00
900 426 0.14
901 104 0.03
902 412 0.14
903 216 0.07
904 200 0.07
906 1 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CATCCCGCCCCTCTGGCCGGCTGAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
CCGGAGCATCGTCGAGAACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGGCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTA
GCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGC
AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
Found at i:1634710 original size:26 final size:26
Alignment explanation
Indices: 1634658--1634710 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
1634648 GTTGACTTAG
* * * * *
1634658 GCATACGGTGTTCATTCTCGGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1634684 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1634710 G
1 G
1634711 ATTGGATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1635891 original size:26 final size:26
Alignment explanation
Indices: 1635854--1635906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1635844 GTTGACTTAG
* *
1635854 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
*
1635880 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
1635906 G
1 G
1635907 ACCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:1638813 original size:857 final size:857
Alignment explanation
Indices: 1635880--1647960 Score: 12806
Period size: 857 Copynumber: 13.7 Consensus size: 857
1635870 CCTAGTCTAA
* * *
1635880 GCATACGGAGTTAATTCCCAGTCTAAGACCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1635945 CTCAGGCATGTGTTGGTGCCACATTTTTCTTCCTCGGGGCTCCATCAACGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------C-AC----CATCGTCGGAGA
* * * * *
1636010 ACCTGATCGGCGGCATTGGGGTTCTGACGATCAGGGAGGTCGGGGGGGTGTGCGCACGTGATGTG
120 ACCTGACCGGCGGCATTGGGGTTC-GACGATCCGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1636075 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1636140 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTCCTGCCAGTAGCAATTAAAGAGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1636205 GAGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1636269 TGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCGAAAAATCCTTTCAAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
1636334 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTT
443 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
1636399 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCAT-AAAATGGTA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1636463 TT-GAATGCAGAAATATGAAGATGTACCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCG
573 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * **
1636526 CATCCTGCCTCCCTGGTCGGCATAGTGCCCGCCCGCCCGCCCCTGTCGTTTCGTTTGTTGGCTTA
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG---C--TCGTTTCGTCGGTTGGCTTA
* * * * *
1636591 GGCATACGGAGTTCATTCTCAGTCTAAGATCGGACC-GAACTGAGGGTGGTGGTAGCAGGATCGG
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGATAGCAGGATCGG
* * * * * * * * * ***
1636655 TAGCACGCAGCGAGGCACCCAGTCGATCCGCAGCTTGCGTATCCCATCCCTCTGGCCGGCTGAGC
762 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* *
1636720 GCCCGCACCCTCGTTTCATGGGTTGACTTAG
827 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1636751 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTACAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C-----C---A---GA-C---C
* * *
1636816 TGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGTATTTTTCTTCGTCGGGG
41 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
1636881 CACCATCGTCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGAT-CGAGGGG
105 ---CA----C----CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT-CGACGATCCG-GGGG
*
1636945 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
157 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1637010 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTG
222 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1637075 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
287 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1637140 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCAACCAAGT
352 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
1637205 TTGGGG-CAAAAACTCCTTTCAAAAAAATTTTAAAAAATTTCGAACCACAAAAAGTTTCAAAAAT
417 TTGGGGCCAAAAA-TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * *
1637269 CGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTGAA-GGACCATTG
481 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTG
* * ** **
1637333 TATGAATTTACAACCCATAAAAATTGCATTGGCTTGCAGAAATATGAAGATACGCCTAAACCCAC
545 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** * * * *
1637398 CCACCATACAATCGATCGACGCCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGTC
610 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--C
* * * * *
1637463 CGCCCGCTCATTTCATCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAA
671 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG
* * * * * * * *
1637528 ACTGAGGGATGTGACAGCAGGATCGGTAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGTG
736 ACTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * *
1637593 CATCCTACCCCTCTGGTCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAG
801 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1637650 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1637715 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCG-CTGGAGAACCTGACCTG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGAACCTGACCGG
* * * * * *
1637779 CGGCATTAGGGTTTCGATGATCCGGGGGGCCGGGGGGTTTGAGCACATGATGTGTGATGGCTGCT
130 CGGCATT-GGGGTTCGACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1637844 GGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
1637909 GAGCATTTGACATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
1637974 TTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTGAATATTTTTGTGCAGGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1638039 AAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
* * * **
1638104 TCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
454 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1638169 TCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
1638234 AAATATGAAGATGTGACTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTT
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
1638299 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
649 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
1638364 TCCCAATCTAAGATCGAACCAGACTGAGGGATGCGATAGTAGGATCGGTAGCACGTAGAGGGGGA
714 TCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * * *
1638429 -CGGGCCGATCCTCGGTTTGTGCATCCTACCCCTTTGGTCGGCTGAGCGCCCGCATGCTTGTTTC
779 CCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1638493 GTGGGTTGACTTAG
844 GTGGGTTGACTTAG
* * * * * *
1638507 GTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGGTAGCACATGTTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1638572 CTCGAGCATGTGCTGGTCCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
1638637 GACATTGGGGTTTCGACGATCCGTGGGGCCGGGGGGTTTGCGCGCATGATGTGCGATGGGTGCTG
131 GGCATTGGGG-TTCGACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1638702 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
1638767 AGCATTTGACATTTTATAGGTTTGCTGCCTGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1638832 TTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACA
325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
1638897 AAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
* ** *
1638962 CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
455 CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
1639027 CACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGA
520 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
1639092 AATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
585 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
1639157 CTGGCCGGCATAGTGCCCGTCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCTGTTAGCTTAGGCA
650 CTGGCCGGC---GT---AGT---G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
1639222 TGCGGAGTTCATTGCCAGTCTAAGATC-AGACC-GAAATGAGGGTTACGGTAGCAGGAACGGTAG
702 TACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACTGAGGGTTGCGATAGCAGGATCGGCAG
* * *
1639285 CACGCAGAGGGGGACCCGCCCGTTCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCC
765 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
1639350 CGCACGCTCGTTTCATGTGTTGACTTAG
830 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1639378 GCATCCGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1639443 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--TCG---GAGA
* * * * ** * *
1639508 AGCTGACCGACGGTATTGGGGTTTTGACGATTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGT
120 ACCTGACCGGCGGCATTGGGG-TTCGACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1639573 GATGGGTGCTAGTACTTGGCCCTTATATTTGCCCCCTATCCCCCATCAAACCTCGAGAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1639638 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
1639703 GGGACACCTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGGTTTTAGCTGAATTGTTTTGT
314 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
1639768 GCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGG-----------T---AAAAAA
379 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
** * * *
1639819 TCCT------T-TCG-A----AAAAATTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
444 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
** * * * *
1639872 CCATGAAACTTCTTGTGAACGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCCT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * **
1639937 TGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACACAATCGATCCACGGCTTGTAC
574 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
1640002 ATCCCGTCTCTCTGGCCTGTGTAGTGCCTGCCCGTTCGCCCCGCCTCCCGCTCATTTCGTCGGTC
639 ATCCCGTCTCTCTGGCCGGCGTA--G--TG-CC---CG-CCCG---CCCGCTCGTTTCGTCGGTT
* ** * * * * * * *
1640067 GGCTTAGGCATACAGAGTTCATTCCCAAACTAAGATTGAACCAAACCGAGGGATACGACAGTAGG
692 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGATAGCAGG
* * * ** ** * * *
1640132 ATCGGCAGCACCCAGAGGGGGAACTGGTAGATCCTTGGCTTGTGCATCCTGCCCCTCTGGTCGAC
757 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * * * * *
1640197 TAAGTGCCCGCATGCTCATTTTGTGGGTGGACTTAG
822 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1640233 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1640297 GCTCGGGCATGTGCTGATGCCGTATTTTTCTTCATCGGGGCATCATCGTCGGAGAACCTGACCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGG
* * * * * * *
1640362 CAGCATTGGGGTTCTGACGATCCAGGGGGCCAGGGGCTGTACGCACATGATGTGAGATGGGTGTT
130 CGGCATTGGGGTTC-GACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1640427 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCCTCTTAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CTTAA
*
1640491 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
1640556 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1640621 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
* * ** * * *
1640686 ATCTC-AGACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGT--T-GTGCCATGAAA
453 ATCTCGA-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1640747 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GGCATTGGCACGT
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
1640811 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATTGATCCACGGCTTGCGCATCCTGCC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
1640876 TCAT-TGGCCGGCGTAGTGCCTGCCCACCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGG
647 TC-TCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
** * ** *
1640940 AGTTCATTTTCAGTCTAAGATTAGACCAGACCGAGTCTAAGATTGGACTGAATCGAGGGTTATGG
707 AGTTCATTCCCAGTCTAAGA-T----C-GA---A--C---CA---GAC----T-GAGGGTTGCGA
* * ** * * *
1641005 TAGCAGGATCGGCAGCATGCAGAGGCGGACCCAACCGATCCTCAGCTTGCTCATCCTGCCCCTCT
750 TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * *
1641070 AGCCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
815 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1641113 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---A-T--C-G-----GA-C---CA-GAC
* * * * * **
1641178 CGAGGGTTGCGGTAGCTCATGCTGGGCTCGGGCATGTACTGGTGTCACATTTTTCTTCACCAGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * **
1641243 CACCATCGCCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTAGGCGATTGGGGGGG
104 -------G-C--ACCATCGTCGGAGAACCTGACCGGCGGCATTGGGG-TTCGACGATCCGGGGGG
* * * *
1641308 CTGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATGTTGGCCCCCTAT
158 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** * *
1641373 CCCTCATCAAACCTCGAGAACTCATGCCCCCTAAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
223 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
1641438 CAGTAGTCATTAAAGCGTCTGAAATGGGAACACTTTTTTCTAATGGTCACAAAATCTTGTACACT
288 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
1641503 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA-AAAACATATAAGGATCATGTCTTCCAAGT
353 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGT
* ** **
1641567 TTGGGGCCAAAACTATTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
417 TTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
* * *
1641632 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTT
482 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
1641697 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATGTGAAGATGAGCCTAAACCCATCT
547 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * * * *
1641762 ACCACCCTATTGACCCACGGCTTGCACATCCTGCCTTTCTGGTCGACGTAGTGCCTGCCCGCCCG
612 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * * **
1641827 TTCATTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-TAGACCACACCAA
677 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGA
* * * * * * * * *
1641891 GTGTTACAACT-GCAGCATCGGTAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTGCGCAT-
741 GGGTTGCGA-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
* * * *
1641954 CTCGCCCCTCTGACTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
805 CT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1642008 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGACCAGACTGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA--------CCAGA-C---C-GAGGGTTGCG
* *
1642073 GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CT
51 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-
* * *
1642137 GGAGAACCTGACCGGTGGCATTGGGGTTCTAACGAT-CGGGGGG-CGGGGTGTGTGCGCACATGA
115 GGAGAACCTGACCGGCGGCATTGGGGTTC-GACGATCCGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
1642200 TGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACC
179 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1642265 TAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
244 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1642330 AAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAAATTCGAG-TTTTAGCTGAATTT
309 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTT
*
1642394 TTTTGTGGCCATCGCCAA-AAAAATAC-AGGATCACGTCTCCCAAGTTTGTGGGCCAAACAA--C
373 TTTTGT-G-CAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAA-AATCC
* * **
1642455 TTCCGAAAAAATTTTAAAAAATGC-CAAACCGGCAAAAAAGTTTCAAAAATCAATG-AAAATATT
433 TTCCAAAAAAATTTTAAAAAAT-CTCGAACC-GC-AAAAAGTTTCAAAAATC-ATGAAAAATAGA
* * * * *
1642518 AAACGAGGTCGTCTTTGGCCA-CAGAACTTCACGT-CAGGCTTAAGGGACGAATGT-TGAAATTA
494 AAACGA-GTCGTC-TT-GCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
1642580 CAA-CCATAAAAATGGCATTGGCATGCAG--ATATGAAGATGTGGCTTAAACCGCACCTACCACC
555 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT-GCCTAAACC-CACCTACCACC
*
1642642 CTATCGAT-CACGGCTTGCGCATCCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGTCTGCCTGC
618 CTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C--C-GCCCGC
* * ** * *
1642706 TCTTTTCGTCGTTTGGCTTAGGCATACGGACATCATTCACAGTCTAAGATCTG-ACCAAACTGAG
678 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAG
* * * ** * *
1642770 GGTTGCGGTAGCAAGATCGACAGCAC-CTAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCC
742 GGTTGCGATAGCAGGATCGGCAGCACGC-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
* * * * *
1642834 TGGCCCTCTGGCTGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTAACTTAG
806 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1642886 GCATACGGAGTTCATTCCCAGTCTAAGCACACGGACTTCATTCCCAGTCTAAGATCGGATTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-A-TCGG-----A----C---C--AGA-C---------
* * * *
1642951 CAAGGGTTACGGCAGCACATGCTGCGCTTC-AGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGG
40 CGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GG
* *
1643014 GGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCAGGGAT-CGGGG
103 GGCACCATCGTC---G-------G-AGAACCTGACCGGCGGCATTGGGGTTCGA-CGATCCGGGG
* * *
1643078 GGCCGGGAGGGTATGCGCAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
156 GGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
1643143 TATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
220 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
1643208 TGCCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTTTTTGAAATGGTCACAAAATCTTGTAC
285 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
1643273 ACTTCGAGTTTTTTGCTGAATTTTTTTGTGCTTGCGAACAAAAATACAAGGATCATGTCTACCAA
350 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * * * *
1643338 GTTTGGGACCAAAACTCTTTCCGAAACAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
415 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * **
1643403 TCATGAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTCACGTTAAGGCTTAAGGGATGATTG
480 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
1643468 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAGGATGTGCCTAAACCCAC
545 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
1643533 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGT----GCCCGCC
610 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
1643594 CGCTCGTTTCGTCTGTTGGCTGAGGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACTG
675 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTG
** * ** * * * *
1643659 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGAACCCTGGTTTGCACATC
740 AGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
* * * * *
1643724 AC-GCCTCTCTGGCCAGCTGAGCACCCGCACGGTCGTTTTGTGGGTTGACTTAGGCATACGAAAT
805 -CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T--G--A-
1643788 TCATTCCCAGTCTG
853 -C-TT---A----G
*
1643802 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1643867 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCTG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGG
* * * * *
1643932 TGGCATTGGGGTTCTAACGATCAGGGGGG-CGGGGTGTGTGCGCACATGATGTGCGATGGGTGCG
130 CGGCATTGGGGTTC-GACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1643996 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1644061 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1644126 TTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAG
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1644191 AAAAAAACAAGGATCATGTCTCCCAAGTTTGTGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
* *
1644256 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
454 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1644321 TCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
1644386 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* **
1644451 TCTGGCCGGCGTAGTGCCCGCCCGCCTACCCGTTCGTTTCGTCTATTGGCTTAGGCATACGGAGT
649 TCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * ** * * *
1644516 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAAGATTGGCAGCACGCAGAGG
710 TCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGG
* * * * * * *
1644581 GGGACCCAGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCGACTGAGCACCCGCGCGCTC
775 GGGACCC-GGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
1644646 GTATCATGGGTTCACTTAGGCAG
839 GTTTCGTGGGTTGACTT----AG
1644669 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C------C--A---GAC
** * * * * *
1644734 CGAGGGTTATGGCAGCACATGTTAGG-TCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * * *
1644798 CACCATCACCGGAGCATCATCGGAGAACCT-ACCCAACAGCGTTGGGGTTTCGGCGATCGGGGGG
105 CACCAT---C---G-----TCGGAGAACCTGA-CCGGCGGCATTGGGG-TTCGACGATCCGGGGG
1644862 GCCTGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCT
157 GCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-
* *
1644926 CTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTG
219 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
1644991 CTGCCTGTAGCAATTAAAGTGTCT-AAATTGGGGACACTTTTTTTAAATGGTCACAAAATCTTGT
284 CTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
1645055 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG-CAAAAAAAATACAAGGATCATGTCTACC
348 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * *
1645119 AAGTTTCGCACCAAAACTCCTTTCAAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
413 AAGTTTGGGGCCAAAAATCC-TTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
* * * * *
1645184 GAATCACGAAAAATAGAAAGCGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACGA
477 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
1645249 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGAGCCTAAACC
542 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * *
1645314 CACCTACCTCCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAACGCAGT-GCTCGCC
607 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC--GGC-GTAG-T----
* *
1645378 CGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
664 -GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * *
1645443 AGATCTG-ACCAGGGC-AAAGGTTAC-AGCAGTAGGATCGACAGCACACAGAGGGGGACCCAGCC
724 AGATC-GAACCA-GACTGAGGGTTGCGA-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCC
* * * * *
1645505 AATCCCCGGCTTGCGCAT-CTCGCCCTTCTGGTCGGCTGAGCACTCGCACGCTCGTTTCGTGGGT
786 GATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1645569 TGACTTAG
850 TGACTTAG
* * * *
1645577 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCAGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
1645642 CTCGAGCATGTGTTGGTGCCGCATTTTTTTTCACCGGGGCACCATTGCTAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T-C----G--T---CGGAGA
* ** **
1645707 ACCTGACCAGCGGCATTGGGGTTCTGGTGATCAAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTC-GACGATCCGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
**
1645772 CGATGGGTGCTGGTACTTGGCCCTTATATT-GTTCCCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1645836 ACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTGTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1645901 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** * *
1645966 TGCATGCCAACAAAAAAACAAGGATCACGACTACCCAGTCTGGGGCTAAAACGCATTCCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
1646031 ATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATG-AAAAT-GGAAACGAGTCGTCTT
443 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
1646094 GCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
1646159 TTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
573 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
1646224 CATCCTGTCTCTCTAGTCGGCATAGTGCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * ** *
1646289 ACGGAGTTCATTCCCAGTCTAAGAT-GAGACTGGACCGAGGGTTGCGGCAGCAGGATCAGCAGCA
703 ACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGATAGCAGGATCGGCAGCA
* * * * * * * * * * * *
1646353 CACAGGGGGGGACCCAGCTGAGCCCTGGCTTGCACATCCCGCCCCTTTGGTCGACTGAGCACCCG
767 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* *
1646418 CACGCTCGTTTCGCAAGTTGAATACGGAGTTCATTCCCAATCTAA
832 CACGCTCGTTT--C-----G--T--GG-GTTGA----C--T-TAG
* * * * *
1646463 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1646528 CTCAGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAG
* * *
1646593 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
119 AACCTGACCGGCGGCATTGGGGTTC-GACGATCCGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
1646658 TGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
181 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1646723 AC-CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTGTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1646787 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
1646852 TGTGCTTGCGAAAAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAAATCCATCCGAAA
376 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* *
1646917 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
441 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
1646982 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
506 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1647047 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACATACCACCCTATCGATCCACGGCTTT
571 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
1647112 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
636 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
1647173 ATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGATGCGATAGCAAGATCGGCAG
701 ATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGATAGCAGGATCGGCAG
** * * * * * ** *
1647237 CACATAGAAGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCAACTGAGCACC
765 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
1647302 CGCACGCTCCTTCCGTGGGTTGACTTAG
830 CGCACGCTCGTTTCGTGGGTTGACTTAG
1647330 GCATAC-GAGGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTTTAAGATCGGACCGGA
1 GCATACGGA-GTTCATTCCCAGTCTAAG-AT-C---G--GA---CC--------A---GACC-GA
* * * * * * **
1647394 CCGAGTGTTGTGGTAGTACATCCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGG
43 --G-G-GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * ***
1647459 GCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGGTAAT-CGGGTG
104 G---CA----C----CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT-CGACGATCCGGG-G
*
1647523 GGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
156 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
1647588 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
220 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
1647653 TGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
285 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
1647718 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAGAAAAATACAAGGATCATGTCTACCAA
350 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * ** **
1647783 GTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCAAACCATAAAAAGTTTTGAAAA
415 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * *
1647848 TCGTGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTATGGGACCATTG
480 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
1647913 TATAAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAA
545 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
1647961 TCCCGCCCCT
Statistics
Matches: 9639, Mismatches: 1106, Indels: 909
0.83 0.09 0.08
Matches are distributed among these distances:
843 5 0.00
844 275 0.03
847 3 0.00
849 2 0.00
850 2 0.00
851 2 0.00
852 7 0.00
853 2 0.00
854 2 0.00
855 241 0.03
856 177 0.02
857 690 0.07
858 158 0.02
859 1 0.00
860 4 0.00
861 8 0.00
862 492 0.05
863 15 0.00
864 3 0.00
865 5 0.00
866 118 0.01
867 224 0.02
868 16 0.00
869 7 0.00
870 131 0.01
871 389 0.04
872 75 0.01
873 134 0.01
874 111 0.01
875 24 0.00
876 26 0.00
877 26 0.00
878 180 0.02
879 633 0.07
880 153 0.02
881 208 0.02
882 398 0.04
883 91 0.01
884 61 0.01
885 3 0.00
886 218 0.02
887 175 0.02
888 314 0.03
889 106 0.01
890 168 0.02
891 335 0.03
892 442 0.05
893 26 0.00
894 9 0.00
895 119 0.01
896 177 0.02
897 345 0.04
898 33 0.00
899 299 0.03
900 133 0.01
901 76 0.01
902 226 0.02
903 6 0.00
904 60 0.01
905 413 0.04
906 60 0.01
907 9 0.00
908 35 0.00
909 2 0.00
910 2 0.00
911 1 0.00
912 61 0.01
913 98 0.01
914 4 0.00
915 4 0.00
916 7 0.00
917 424 0.04
918 7 0.00
919 2 0.00
920 61 0.01
921 80 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (857 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCGACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGAACCAGACTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAG
Found at i:1641143 original size:26 final size:26
Alignment explanation
Indices: 1641113--1641165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1641103 GTTGACTTAG
*
1641113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1641139 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1641165 G
1 G
1641166 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1643816 original size:26 final size:26
Alignment explanation
Indices: 1643777--1643826 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1643767 GTTGACTTAG
1643777 GCATACGAAATTCATTCCCAGTCTGA
1 GCATACGAAATTCATTCCCAGTCTGA
* *
1643803 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAATTCATTCCCAGTCT
1643827 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTGA
Found at i:1644699 original size:26 final size:26
Alignment explanation
Indices: 1644669--1644721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1644659 ACTTAGGCAG
*
1644669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1644695 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1644721 G
1 G
1644722 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1646475 original size:26 final size:26
Alignment explanation
Indices: 1646439--1646489 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1646429 CGCAAGTTGA
1646439 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
1646465 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
1646490 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:1647372 original size:26 final size:26
Alignment explanation
Indices: 1647330--1647382 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1647320 GTTGACTTAG
1647330 GCATACGAGGTTCATTCCCAGTCTAA
1 GCATACGAGGTTCATTCCCAGTCTAA
* *
1647356 GCATACG-GAGTTGATTCCCAGTTTAA
1 GCATACGAG-GTTCATTCCCAGTCTAA
1647382 G
1 G
1647383 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGAGGTTCATTCCCAGTCTAA
Found at i:1647696 original size:892 final size:891
Alignment explanation
Indices: 1640233--1647960 Score: 9256
Period size: 879 Copynumber: 8.7 Consensus size: 891
1640223 GTGGACTTAG
* *
1640233 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1640298 CTCGGGCATGTGCTGATGCCGTATTTTTCTTCATCGGGG---CAT--------CATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
1640352 ACCTGACCGGCAGCATTGGGGTTCTGACGATCCAGGGGGCC-AGGGGCTGTACGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
1640416 AGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1640481 -CCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAA
260 ACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1640545 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1640610 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * ** * * *
1640675 AATTTTAAAAAATCTCAGACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGT--T-G
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
1640737 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
1640801 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATTGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1640866 GCATCCTGCCTCAT-TGGCCGGCGTAGTGCCTGCCCACCCCCCCGCTCGTTTCGTCGGTTGGCTT
649 GCATCCCGTCTC-TCTGGCCGGCGTA--G--TG----CCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * *
1640930 AGGTATACGGAGTTCATTTTCAGTCTAAGATTAGACCAGACCGAGTCTAAGATTGGACTGAATCG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-----GGTT-G-C-G-A-C-
* ** * * * *
1640995 AGGGTTATGGTAGCAGGATCGGCAGCATGCAGAGGCGGACCCAACCGATCCTC-AGCTTGCTCAT
759 -----------AGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCAT
* * ** * * *
1641059 CCTGCCCCTCTAGCCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGT
812 CCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
1641124 TCATTCCCAGTCTAA
877 TCATTCCCAGTCTAA
* * * * *
1641139 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGTAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ** * *
1641204 CTCGGGCATGTACTGGTGTCACATTTTTCTTCACCAGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
1641269 ACCTGACCGGCGGCATTGGGGTT-TAGGCGATTGGGGGGGCTGGGGAGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
1641333 CGATGGGTGCTGGTACTTGGCCCTCATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAT
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
1641398 GCCCCCTAAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCATTAAAGCGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1641463 GGGAACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * ** *
1641528 TGCATGCCAAAAAACATATAAGGATCATGTCTTCCAAGTTTGGGGCCAAAACTATTTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
1641593 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1641658 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1641723 TTGGCACGCAAAAATGTGAAGATGA-GCCTAAACCCATCTACCACCCTATTGACCCACGGCTTGC
585 TTGGCACGCAGAAATATGAAGAT-ATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
1641787 ACATCCTGCCTTTCTGGTCGACGTAGTGCCTGCCCGCCCGTTCATTTCGTCGGTTAGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * * *
1641852 TACGAAGTTCATTCCCAGTCTAAGATTAGACCACACCAAGTGTTACAACTGC-AGCATCGGTAGC
710 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAG-ATCGGCAGC
* * * * *
1641916 ACACAAAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCTCGCCCCTCTGACTGACTGAGCGCC
774 ACACAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
* *
1641980 CGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
838 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1642034 GCATACGGAGTTCGTT-CC---C----A---GACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
1642088 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT---C---G---C-T-GGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** *
1642142 ACCTGACCGGTGGCATTGGGGTTCTAACGATCGGGGGG-C-GGGGTGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
1642205 GATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTAACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1642270 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1642335 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAAATTCGAG-TTTTAGCTGAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1642399 TGGCCATCGCC-AAAAAAATAC-AGGATCACGTCTCCCAAGTTTGTGGGCCAAACAA--CTTCCG
390 T-G-CAT-GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG-GGGCCAAA-AATCCTTCCG
**
1642460 AAAAAATTTTAAAAAATGC-CAAACCGGCAAAAAAGTTTCAAAAATCAATG-AAAATATTAAACG
450 AAAAAATTTTAAAAAAT-CTCAAACC-GC-AAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACG
* * * * *
1642523 AGGTCGTCTTTGGCCA-CAGAACTTCACGT-CAGGCTTAAGGGACGAATGT-TGAAATTACAA-C
511 A-GTCGTC-TT-GCCATGA-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
1642584 CATAAAAATGGCATTGGCATGCAG--ATATGAAGATGTGGCTTAAACCGCACCTACCACCCTATC
572 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATAT-GCCTAAACC-CACCTACCACCCTATC
*
1642647 GAT-CACGGCTTGCGCATCCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGTCTGCCTGCTCTTT
635 GATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG-C--CC-GCTCGTT
* ** * * * *
1642711 TCGTCGTTTGGCTTAGGCATACGGACATCATTCACAGTCTAAGATCTGACCAAACTGAGGGTTGC
691 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
** * * * * *
1642776 GGTAGCAAGATCGACAGCAC-CTAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCTGGCCC
756 GACAGCAAGATCGGCAGCACAC-AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCC
* * * *
1642840 TCTGGCTGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
820 TCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
1642905 AGTCTAA
885 AGTCTAA
* * ** * * * *
1642912 GCACACGGACTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
1642977 CTTC-AGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCACCGAA
66 C-TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * *
1643040 GAACCTGACCGGCGGCATTGGGGTTCCAGG-GATCGGGGGGCCGGGAGGGTATGCGCAAATGATG
129 GAACCTGACCGGCGGCATTGGGGTT-CTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
1643104 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1643169 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1643234 ATGGGGACATTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
1643299 TGTGCTTGCGAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * *
1643364 CAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATT
453 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* **
1643429 TTGCCATGAAACTTCACGTTAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1643494 CATTGGCACACAAAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1643559 CGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCTCGTTTCGTCTGTTGGCTGAGGCATAC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * * *
1643624 GGACTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAGCACAC
* * * ** * * *
1643689 AGAGGGGGACCCGATCGAACCCTGGTTTGCACATCACGCCTCTCTGGCC-AGCTGAGCACCCGCA
778 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCACCCGCA
* * * * *
1643753 CGGTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTGA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1643803 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1643868 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** *
1643922 ACCTGACCTGTGGCATTGGGGTTCTAACGATCAGGGGGG-C-GGGGTGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
1643985 CGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGACCTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1644050 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1644115 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1644180 TGCATGCCAAGAAAAAA-ACAAGGATCATGTCTCCCAAGTTTGTGGCCAAAAATCCTTCCAAAAA
390 TGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
1644244 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1644309 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1644374 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
**
1644439 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCCGTTCGTTTCGTCTATTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG------C--TCGTTTCGTCGGTTGGCTTA
* ** * * * *
1644504 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAAGATTGGC
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGC
* * * *
1644569 AGCACGCAGAGGGGGACCCAGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCGACTGAGC
771 AGCACACAGAGGGGGACCC-GACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * * *
1644634 ACCCGCGCGCTCGTATCATGGGTTCACTTAGGCAGGCATACGGAGTTCATTCCCAGTCTAA
835 ACCCGCACGCTCGTTTCGTGGGTTGACTT----AGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
1644695 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1644760 -TCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * * *
1644824 ACCT-ACCCAACAGCGTTGGGGTT-TCGGCGATCGGGGGGGCCTGGGGTGGTGTGCGCACATGAT
131 ACCTGA-CCGGCGGCATTGGGGTTCT-GGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGAT
*
1644887 GTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCTCTATCCCTCATCAAACCTGGAGAAC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAAC
* * *
1644951 TCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCTGTAGCAATTAAAGTGTCT-
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1645015 AAATTGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
321 AAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** * *
1645080 TTTTATGCATG-CAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGCACCAAAACTCCTTTCA
385 TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCC
* * * * *
1645144 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAGAATCACGAAAAATAGAAAGCGAGT
449 GAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
1645209 CGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1645274 ATGGCATTGGCACGTAGAAATATGAAGATGA-GCCTAAACCCACCTACCTCCCTATCGATCCACG
579 ATGGCATTGGCACGCAGAAATATGAAGAT-ATGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
1645338 GCTTACGCATCCCGTCTCTCTGGCCAACGCAGT-GCTCGCCCGCCCGCCCGCCCACCCGCTCGTT
643 GCTTGCGCATCCCGTCTCTCTGGCC--GGC-GTAG-T---------GCCCG----CCCGCTCGTT
* * * ** * * *
1645402 TCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCTGACCAGGGCAAAGGTTAC
691 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * *
1645467 -AGCAGTAGGATCGACAGCACACAGAGGGGGACCC-AGCCAATCCCCGGCTTGCGCATCTCGCCC
756 GA-CAGCAAGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCC
* * * *
1645530 TTCTGGTCGGCTGAGCACTCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT--
819 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1645575 -AG-----
884 CAGTCTAA
* * *
1645577 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCAGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ** **
1645642 CTCGAGCATGTGTTGGTGCCGCATTTTTTTTCACCGGGGCACCATTGCTAGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
1645707 ACCTGACCAGCGGCATTGGGGTTCTGGTGATCAAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
**
1645772 CGATGGGTGCTGGTACTTGGCCCTTATATT-GTTCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1645836 ACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTGTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1645901 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** *
1645966 TGCATGCCAACAAAAAA-ACAAGGATCACGACTACCCAGTCTGGGGCTAAAACGCATTCCGAAAA
390 TGCATGCCAA-AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * *
1646030 AATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATG-AAAAT-GGAAACGAGTCGTCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
1646093 TGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
1646158 ATTGGCACATAGAAATATGAAGATGA-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCACGCAGAAATATGAAGAT-ATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1646222 CGCATCCTGTCTCTCTAGTCGGCATAGTGCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * *
1646287 ATACGGAGTTCATTCCCAGTCTAAGATGAGACTGGACCGAGGGTTGCGGCAGCAGGATCAGCAGC
709 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAGC
* * * * * * * *
1646352 ACACAGGGGGGGACCC-AGCTGAGCCCTGGCTTGCACATCCCGCCCCTTTGGTCGACTGAGCACC
774 ACACAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
*** *
1646416 CGCACGCTCGTTTCGCAAGTTG----A---ATACGGAGTTCATTCCCAATCTAA
838 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1646463 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1646528 CTCAGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTC-GGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
1646593 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
1646658 TGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1646723 AC-CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTGTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1646787 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * *
1646852 TGTGCTTGCGAAAAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAAATCCATCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
1646917 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
1646982 TTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1647047 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACATACCACCCTATCGATCCACGGCTTT
583 CATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
1647112 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
1647177 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGATAGCAAGATCGGCAGCACAT
713 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAGCACAC
* ** * *
1647242 AGAAGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCAACTGAGCACCCGCAC
778 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAC
* *
1647307 GCTCCTTCCGTGGGTTGACTTAGGCATAC-GAGGTTCATTCCCAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAA
* * * * * * *
1647356 GCATACGGAGTTGATTCCCAGTTTAAGATCGGACCGGACCGAGTGTTGTGGTAGTACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
1647421 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * **
1647486 ACCTAACCGGTGGCATTGGGGTTCCGGTAATCGGGTGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
*
1647551 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1647616 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1647681 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1647746 TGCATGCCGAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* ** ** * *
1647811 ATTTAAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTT
455 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
1647876 GCCATGAAACTTCACGTAAAGGCTTATGGGACCATTGTATAAATTTACAAGCAATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
1647941 TTGGCATGCAGAAATATGAA
585 TTGGCACGCAGAAATATGAA
1647961 TCCCGCCCCT
Statistics
Matches: 5921, Mismatches: 698, Indels: 420
0.84 0.10 0.06
Matches are distributed among these distances:
867 145 0.02
868 1 0.00
869 1 0.00
870 5 0.00
871 194 0.03
872 66 0.01
873 81 0.01
874 94 0.02
875 19 0.00
876 22 0.00
877 21 0.00
878 183 0.03
879 629 0.11
880 41 0.01
881 205 0.03
882 147 0.02
883 90 0.02
884 67 0.01
885 2 0.00
886 215 0.04
887 190 0.03
888 317 0.05
889 101 0.02
890 165 0.03
891 397 0.07
892 496 0.08
893 79 0.01
894 7 0.00
895 129 0.02
896 15 0.00
897 23 0.00
898 18 0.00
899 95 0.02
900 79 0.01
901 70 0.01
902 227 0.04
903 7 0.00
904 43 0.01
905 414 0.07
906 93 0.02
907 4 0.00
908 4 0.00
909 3 0.00
910 1 0.00
911 3 0.00
912 55 0.01
913 85 0.01
915 1 0.00
916 7 0.00
917 409 0.07
918 4 0.00
919 1 0.00
920 61 0.01
921 90 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGGCAGCACACAGA
GGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1648052 original size:26 final size:26
Alignment explanation
Indices: 1648016--1648068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1648006 GTTGACTTAG
1648016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1648042 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1648068 G
1 G
1648069 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1648821 original size:673 final size:672
Alignment explanation
Indices: 1647274--1649318 Score: 2894
Period size: 673 Copynumber: 3.0 Consensus size: 672
1647264 CGACTTGTGC
* * * * *
1647274 ATCCCGCCCCTCTGGCCAACTGAGCACCCGCACGCTCCTTCCGTGGGTTGACTTAGGCATAC-GA
1 ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
1647338 GGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTTTAAGATCGGACCGGACCGAGTGTT
66 -GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
1647403 GTGGTAGTACATCCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG
130 GCGGTAGCACATGCTGGGCT-GGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG---CA---
* * * *** *
1647468 CCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGGTAATCGGGTGGGCCGGGGGG
188 -C----CATCGTCGGAGAACCGAAACGGTAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG
*
1647533 GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
247 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1647598 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
312 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
1647663 CATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
377 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
1647728 TTTAGCTGAATTTTTTTGTGCATGCCGAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
442 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
1647793 AAAAATCCTTCCGAAAAAATTTAAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAA
507 AAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CGTAAAAAGTTTTGAAAATCGTGAAAAA
* * *
1647858 TAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTA-AAGGCTTATGGGACCATTGTATAAATTT
571 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-AGAAGGCTTAAGGGACCATTGTATGAATTT
*
1647922 ACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGA
635 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
1647960 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGAGTTGACTTAGGCATACGGA
1 ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
1648025 GTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
** * * *
1648090 CGACAGCACATGCTGGGCTCGAGCATCTGCTGGTGCCGTATGTTTCTTC-CCTGGGGCACCATCG
131 CGGTAGCACATGCTGGGCT-GGGCATGTGCTGGTGCCGTATTTTTCTTCACC-GGGGCACCATCG
1648154 TCGGAGAACCGAAACGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
194 TCGGAGAACCGAAACGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* ** * *
1648219 GGTGTGCGATGGGTTTTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTCGAGA
259 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
1648284 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCTAGTAGCCATTAAAGTGTC
324 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1648349 TGAAATGGGGACACTTTTTTCGAAA-GGTAACAAAATCTTGTACACTTCGATTTTTTAGCTGAAT
389 TGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
1648413 TTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGTGCCAAAACT-CTTC
453 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
** * *
1648477 CGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGAA
518 CGAAAAAATTTTAAAAAATCTCGAAC-GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1648542 TCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAA
582 TCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1648607 AATGGCATTGGCATGCAGAAATATGA
647 AATGGCATTGGCATGCAGAAATATGA
* *
1648633 ATCTCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
1648698 GTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
1648763 CGGTAGCACATGCTAGGCTGGCGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACTATCGT
131 CGGTAGCACATGCTGGGCTGG-GCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGT
* * * * *
1648828 CGGAGCATCGTCGGAGAACCTGACTGACAGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGTT
195 CGGAG-AAC--C-GA-AA-C-G---G-TAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
*
1648893 GTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
249 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
**
1648958 AACCTCGAGAACTCACACCTGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
314 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
1649023 TTAAACTGTCTCAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
379 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
1649088 TAGGTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAA
444 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
1649153 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGTTTTGAAAATCATGAAAAATA
509 AAATCCTTCCGAAAAAATTTTAAAAAATCTCG-AACGTAAAAAGTTTTGAAAATCGTGAAAAATA
* * ***
1649218 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAATGTTGTATGAATTTACA
573 GAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
1649283 AGCCATAAAAATGGTATTGGCAAGCAGAAATATGA
638 AGCCATAAAAATGGCATTGGCATGCAGAAATATGA
1649318 A
1 A
1649319 GATGTGCCTA
Statistics
Matches: 1215, Mismatches: 123, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
672 3 0.00
673 319 0.26
674 251 0.21
675 49 0.04
676 1 0.00
677 2 0.00
678 2 0.00
679 2 0.00
680 1 0.00
683 6 0.00
684 270 0.22
685 145 0.12
686 162 0.13
687 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (672 bp):
ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGGTAGCACATGCTGGGCTGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTC
GGAGAACCGAAACGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
AAAAATTTTAAAAAATCTCGAACGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGA
Found at i:1651972 original size:26 final size:26
Alignment explanation
Indices: 1651935--1651987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1651925 GTTGACTTAG
1651935 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1651961 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1651987 G
1 G
1651988 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1652871 original size:26 final size:26
Alignment explanation
Indices: 1652834--1652886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1652824 GTTGACTTAG
*
1652834 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1652860 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1652886 G
1 G
1652887 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1653347 original size:886 final size:888
Alignment explanation
Indices: 1651084--1655519 Score: 5941
Period size: 899 Copynumber: 5.0 Consensus size: 888
1651074 GTTGAATTAG
* * * *
1651084 GCATACGAAGTTCATTTCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
1651148 GCTCGAGCATGTACTGG-GCCGCATTTTTC-T--TC---GC-T---G---GA--GAACCTGATCG
65 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGAGCATCACGCACGACGGAACCTGACCG
* * ** * * *
1651197 GCAGCATTGGGGTTCCAGCGATCGGGGGGGCCAGGGTGGTGTGCGCACATGATGTGTGATGGGTG
130 ACGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
1651262 CTGGTACTTGGCCATTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1651327 AAGATCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * *
1651391 TTTTTCAAATGGTCACCAAATCTTGTACTCTTCGAGTTTTTAGCTCAATTTTTTTATGTAAGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
**
1651456 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGGTAAAAATCCTTCTGAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAAATCCTTCTGAAAAAATTTTAAAA
* * ** * * *
1651521 AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAA
453 AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
1651586 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
*
1651651 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
1651716 TCTCTAGCCGGCGTAGTGCCCGCCCGTCGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
648 TCTCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
* *
1651781 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAACACG
709 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACG
* * *
1651846 TAGAGGGGGACCCGGCCGATCCCC-GACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
774 CAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * *
1651910 ACGTTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1651961 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAGGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1652026 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGGGCATCGTCGGATA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC--GG-AGCATC-AC---GCA-CGACGG--A
* ** *
1652091 ACCTGACCGACGACATTGGGGTTCTGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGTTGTGC
121 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
1652156 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1652221 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
251 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1652286 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTAT
316 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
1652351 GCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTAGGGCCAAAACTCCTACCGAAAAAA
381 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCTGAAAAAA
* * * *
1652416 ATTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGATAACGAGTCGTCTTG
445 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
1652481 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCTATAAAAATGGCAT
510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1652546 TGGCACACAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
575 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
1652611 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCCTAGG
640 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * * * *
1652676 CATACGGAGTTCATTCCCATTTTAAGATTGGACCGGACCGAGGGTT-CTAGTAGCAGGATCGACA
705 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTAC-GGCAGCAGGATCGGCA
* * * *
1652740 GCACGCAGAGGGGGACCCGACGGATCCCTAGCTTGAGCATCCCGCTCCTCTGGCCGGCTGAGCAC
769 GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
1652805 TCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
834 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1652860 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
1652925 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGAGCA-C-CGC-CGAC-GAACCTGACCGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGAGCATCACGCACGACGGAACCTGACCGA
* * * *
1652986 CGGCATTAGGGTTCTGGCAATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGCGC
131 CGGCATTGGGGTTCTGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * *
1653051 TGGTACTTGGCCCTTATATTGGCCCCCTATCGCTTATCAAACCTTGAGAACTCGCACCTCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1653116 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1653181 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCTGATTTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1653246 AAAAAATACGAGGATCACGTCTAACAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAAATCCTTCTGAAAAAATTTTAAAAA
* *
1653311 ATCCCAAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* ***
1653376 TTCACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
1653441 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA--------
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
1653498 -TCT------C---GT-----CCCGCCCG----CTTGTTTCGTCGGTTGGCTTAGGCATACGGGG
649 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
1653544 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCATGCAAAG
714 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * *
1653609 AGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAGCCGAGCACCCGCACGCTT
779 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
*
1653674 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1653719 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTCCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1653784 TTCGGGAATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGA-GCATCGCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGAGCATCA-CG-C--ACG-A---C-G-GA
*
1653848 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
121 ACCTGACCGACGGCATTGGGGTTCTGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
1653913 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1653978 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1654043 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
1654108 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCCAAAAATCCTTCCCAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGCCAAAAATCCTTCTGAAAAA
* *
1654173 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTT
444 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
1654238 GCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**
1654303 TTGGTTCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
574 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1654368 CATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACTAGTTTCATCAGTTGGCTTAG
639 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* *** *
1654433 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCTTTAGGATTGGCA
704 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * * *
1654498 GCACGTAGAGGGGGACCTGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCAC
769 GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* *
1654563 CCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTCCATTCCCAGTCTAA
834 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1654618 GCATACGGAGTTCATTCCCAATCTAAGATC-GAACTGAACCGAGGATTG-GGACAGCACATTCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGG-CAGCACATGCTG
** * * *
1654681 GGCTCACGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACTGGAGCATCGTCGGA
64 GGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC--GG-AGCATCAC----GCA-CGAC-G-
* * * * *
1654746 GAACTTAACCGACGGCATTGGGGTT-TCGACGATCGGGGGGCCAGGGGGGTGTTCGCACATGATG
119 GAACCTGACCGACGGCATTGGGGTTCT-GGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
1654810 TGCAATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * * * *
1654874 GCATCCCCTTAAAGGGTATTGGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATATCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1654939 ATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1655004 TGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-TGCAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCTG-AA
* * * ** * * *
1655068 AAAATTTTAAAAATTCTCGAACCGTGAAAATTTTCAAAAATTATGAAAGATAGAAAACGAGTCGT
441 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1655133 CTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1655198 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
571 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1655263 GCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCACGTCCGCCCGCCCGCTCGTTTCGTCGATC
636 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCACTCGTTTCGTCGGTT
* * * *
1655328 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGACCGAGGGTTGCGACAGTAGG
697 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGG
* * * * *
1655393 ATCGGTAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCG-CCCTCTGGCTGGT
762 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
1655457 TGAAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCAATACGGAGTTCATT-CCAGTCTAA
827 TG-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
1655519 G
1 G
1655520 ATCGGACCGG
Statistics
Matches: 3134, Mismatches: 328, Indels: 170
0.86 0.09 0.05
Matches are distributed among these distances:
859 273 0.09
860 2 0.00
862 2 0.00
863 9 0.00
865 1 0.00
866 1 0.00
868 2 0.00
869 1 0.00
872 478 0.15
873 5 0.00
877 73 0.02
878 12 0.00
879 1 0.00
881 5 0.00
885 33 0.01
886 446 0.14
887 3 0.00
888 4 0.00
890 4 0.00
893 1 0.00
895 9 0.00
896 3 0.00
897 3 0.00
898 420 0.13
899 600 0.19
900 37 0.01
901 57 0.02
902 303 0.10
903 341 0.11
904 4 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGAGCATCACGCACGACGGAACCTGACCGA
CGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAT
CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1653723 original size:26 final size:26
Alignment explanation
Indices: 1653693--1653745 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1653683 GTTGACTTAG
1653693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1653719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1653745 G
1 G
1653746 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1654628 original size:26 final size:26
Alignment explanation
Indices: 1654592--1654644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1654582 GTTGCCTTAG
*
1654592 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
*
1654618 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
1654644 G
1 G
1654645 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:1655260 original size:898 final size:900
Alignment explanation
Indices: 1653504--1655519 Score: 2965
Period size: 898 Copynumber: 2.2 Consensus size: 900
1653494 CGCATCTCGT
* * *
1653504 CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCCCACTAGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
1653569 GGACCGAGGGTTACGGCAGCAGGATCAGCAGCATGCAAAGAGGGACCCGGCCGATCCCCGGCTTG
65 GGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* ** * * *
1653634 CGCATCCCACCCCTCTGGCCAGCCGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
1653699 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGTCCGAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGGA
* * ** *
1653764 TTGCGGTAGCACATGCTAGGTTCGGGAATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCAT
260 TTGCGGCAGCACATGCTAGGCTCACGAATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCAT
* * * *
1653829 CGTCGGAGCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGG
325 CCTCGGAGCATCGCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGG
*
1653894 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
390 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
1653959 TCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
455 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAG
* *
1654024 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
520 CCATTAAAATATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
1654089 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGC
585 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGC
1654154 CAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAA
650 CAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAA
* *
1654219 ATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTT
715 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
1654284 ACAAGCCAAAAAAATGGCATTGGTTCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
780 ACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
1654349 TATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCG
845 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACGCCG
* * *
1654403 CCTGCCCACTAGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCCCACTAGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * * * *
1654468 GGACTGAGGGTTACGGCTTTAGGATTGGCAGCACGTAGAGGGGGACCTGATCGATCCTCGGCTTG
65 GGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
*
1654533 CGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
1654598 GGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAACTGAACCGAGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAG-ACCGAGG
* * * *
1654662 ATTG-GGACAGCACATTCTGGGCTCACGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACC
259 ATTGCGG-CAGCACATGCTAGGCTCACGAATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACC
* *
1654726 ATCACT-GGAGCATCGTCGGAGAACTTAACCGACGGCATTGGGGTTTCGACGATCG-GGGGGCCA
323 ATC-CTCGGAGCATCG-CGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCA
* *
1654789 GGGGGGTGTTCGCACATGATGTGCAATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCC
386 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * * *
1654853 CTCATCAAACCTCGAGAACTCGCATCCCCTTAAAGGGTATTGGAGATTTTATAGGTTTGCTGCCA
451 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCA
*
1654918 GTAGCCATTAAAATATCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTC
516 GTAGCCATTAAAATATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
1654983 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTG
581 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTG
** * * * ** *
1655048 GGGCCAAAAATCCTTTGCAAAAAATTTTAAAAATTCTCGAACCGTGAAAA-TTTTCAAAAATTAT
646 GGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTT-AAAAATCAT
* * *
1655112 GAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATG
710 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
1655177 AATTTACAAGGCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
775 AATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
1655242 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCACGTCCG
840 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-ACG-CCG
* * * *
1655305 CCCGCCCGCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACC
1 CCCGCCCACTAGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
1655370 GGACCGAGGGTTGCGACAGTAGGATCGGTAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
65 GGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
1655435 CGTATCCCG-CCCTCTGGCTGGTTGAAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCAAT
130 CGCATCCCGCCCCTCTGGCTGGCTG-AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-AT
1655498 ACGGAGTTCATT-CCAGTCTAAG
193 ACGGAGTTCATTCCCAGTCTAAG
1655520 ATCGGACCGG
Statistics
Matches: 994, Mismatches: 111, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
897 4 0.00
898 419 0.42
899 343 0.35
900 37 0.04
901 54 0.05
902 137 0.14
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCGCCCACTAGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACAGACCGAGGAT
TGCGGCAGCACATGCTAGGCTCACGAATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCATC
CTCGGAGCATCGCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGG
GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAATATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCC
AAAAATCCTTCCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAA
TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACGCCG
Found at i:1656951 original size:26 final size:26
Alignment explanation
Indices: 1656915--1656987 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
1656905 TGACTTAGGA
1656915 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1656941 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1656967 ATACGGAGTTCATTCCCAGTC
1 ATACGGAGTTCATTCCCAGTC
1656988 AAGATCAGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1657872 original size:26 final size:26
Alignment explanation
Indices: 1657842--1657894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1657832 GTTGACTTAG
*
1657842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1657868 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1657894 G
1 G
1657895 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1658352 original size:905 final size:894
Alignment explanation
Indices: 1655574--1669782 Score: 10426
Period size: 905 Copynumber: 16.0 Consensus size: 894
1655564 CAAGTTGTGC
* * ** *
1655574 GCCAAC-AAAATACAAGGATCACGTCTA-CAAGTTTGGAGCCAAAAATAATTCTGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
1655637 AAAAACATCCCAAACCGTAACAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG-CA
66 AAAAA-ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1655701 TGAAAACATCACGTGAAGGCTTCAGGGACCATTGTAATGAATTTACAAG-CATAAAAATGGCATT
130 TG-AAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATGGCATT
* * *
1655765 GGCAAGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCGCA
193 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** * ***
1655830 TCCCGTCTCTCTGGTCGGCATAGTGAACGCCCGCCTGCCCATGCGCTCGTTTCGTCGGTTGGCTT
258 TCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCC-CCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
1655895 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTT---G--G--GG-T---
321 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAG
* ** * * ** * * *
1655949 ----A--C-TA---GGA-TTGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTAACTGACTAAGC
386 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * * *
1656003 GCCCGTACGCTCGTTTCATGGGTTCACTTAGGAATACAGAGTTCATTCCCAGTCTAAGCATACGG
451 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TGA
** * * *
1656068 AGTTCATTCCGAGTC-AAGATTGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCT
515 AGTTCA-T-C-AGTCTAAGATCAGACC--A-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * ** * *
1656132 TGTGATGGTGTCGCATTTCTCTTCG-CTGGGGCACCATCATCGGAGTATTACCGAAAAACCTGAC
574 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * ** * * * *
1656196 CAGCAGCATTTTGGTTCCGACGATTGGGGGGCCCGGGGGGTGTGTGCACATGATGTGCTATGGGT
638 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
1656261 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
703 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
1656326 AAAGACCATTTGAGA---T-----TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
768 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
1656383 TTTTTTCAAATGGTCACAAGATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGCAA
833 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** *
1656445 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCACCCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
1656510 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
1656575 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * **
1656640 ATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * * *
1656705 AGTCTCTCAGGCCGGTGTAGTGACGGCCTGCCCGCCCGCCCTCTCGTTTCATCGGTTGGCTTAGG
261 CGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
1656770 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGCATC-G--G
324 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAG
* * * * *
1656832 TA-GC--------ATCC-A--GATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAGCGCC
389 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
1656885 CGCACGCTCGTTTCGTGTGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
454 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG----C--A-T
* *
1656950 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAGATCAGACCGGACCGAGGGTTGCAG
512 TGA-----AGT-T---CAT-C--AG-----T--C--T-AAGATCAGACC--A-CGAGGGTTGCGG
* * * *
1657015 CAGCACATGCTGGGCTCGAGCTTGTGATGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCG
552 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCG
* * * ** ** *
1657079 GAGCATTGCCGGAGAACTTGACCGGCGACATTTTGGTTCCGGTGATCGGAGGGGCC-GGGGGGTT
616 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTG
* *
1657143 TGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
680 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
1657208 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
745 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
1657273 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTG
810 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
1657338 AGCTGAATTTTTTTGTGCAT
875 AGCTGAATTTTTTTGTGCAT
* * * ** *
1657358 GCCAAAAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAATGCT-CTATCCAAAAAAATTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTT
* * *
1657422 TAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCC
65 T-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1657487 GTGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
129 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
1657552 GCACACAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-GGAT
194 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
1657616 CCCATCTCTCAGGCCGACGTAGTGCCCTGTTCGCCCACTCGCCTGCTCGTTTCGTCGATTGGCTT
259 CCCGTCTCTCTGGCCGACGTAGTGCCC-G-CCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** ** * *
1657681 AGGCATACAGAGTTCATTCCCAATGTAAGATTGGACCAGATGGAGGGTTGCAGTAGCAGGATCAG
321 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAG
* * * * * * ** * * *
1657746 CAGCGCGTAGAGAGGGACCCGATCGATCCTCGGCTTACGGATCCCATCCCACTGGCCGGTTAAGC
386 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
1657811 ACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGA
451 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TGA
*
1657876 AGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
515 AGTTCA-T-C-AGTCTAAGATCAGACC--A-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** * *
1657941 TGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCAGGAGAACCTGTCC
574 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
1658006 GGCAGTATTGGGGTTCCGACGATCGGGGGGACTGGGGGGGTGTGCGCACATGACGTCCGATGGGT
639 GGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1658071 GCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
703 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
1658136 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGGAGCCATTAAAGTGTCTAAAATGGGGATAC
768 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1658201 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCAT
833 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * * * ** *
1658264 GCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCTAAAACTCGTTTTGAAGAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** * *
1658329 AAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAACAATAGAAAATGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1658394 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
1658459 ACACA-AAA-AT----A--TG----------------A----A--GAT-------TTGCGCATCT
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
1658487 CGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCCAGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGG
261 CGTCTCTCTGGCCGACGTAGTGCCCGC-CGCC-CCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * * * * *
1658552 CATACATAGATCATTCCCAGCCTAAGATCGGACC-GAATCAAGCGTTGCGGCAGCAGGATCGGCA
324 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * * ** * *
1658616 GCACGTCA-AGGGGGACTCGGTCGATCCCCAGCTTGCGCATCTCTACCCTCTGGCCGACTGAGCA
388 GCACG-CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
1658680 CCCGCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCAATT-CCAG--T---C--T-AA
452 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGCATTGAA
* * * ** *
1658736 G---ATC-G-----GACCAGACCA--AGGGTTGCAGCAGCACATGCTAGGCTCAAGCATGTGTTG
516 GTTCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * ** * * *
1658790 GTGCCACATTTTTCTTTGTTGGGGCACCATCATCGGAGCAACACTAGAGAACCTGACTGACAGCA
581 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* ** **
1658855 TTGGGGTTTCGACGATCAGGGGGATCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTATT
646 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * ** * *
1658920 ACTTGGCCCTTACATTGGTCCCCTATCTCTCATCAAACCTTAAGAACTCACATCCCTTTAAAGAG
709 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
1658985 TATTTGAGATTTTACAGCTTTGCTGTCC-GTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
774 CATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
1659048 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
838 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
1659105 TCTAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCCTCCGAAATAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
1659169 AAAAAATACCGAACCACAAAAAGTTTCAAAAATC-TTAAAAATAGAAAACGAGTCGTCTTGCCAC
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-
*
1659233 T-AAACTTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTT
130 TGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
1659297 GCACACAGAAAAATGAAGATATGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGTAT
194 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
1659362 CCTGTCTCTCTGGCCGGCGCAGTGCCCG-C-CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
259 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
1659425 CATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCAGCAG
324 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAG
* **
1659490 CACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCG-----CG------T---C--CT-------
389 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
1659532 -----GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATTGGACCG
454 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATT------
** * * * ** * * **
1659591 GACCGAGGATTGCGGCAG-C-AGGATCGGCAGCACGCAGAGGGGGAC-CCGATCGATCCCCGACT
513 GA---A-G-TT-CATCAGTCTAAGATCAG-ACCACG-AG-GGTTG-CGGC-AGC-A--CATG-C-
* ** * * * *** * *
1659653 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA-CGCTCGTTTCGT-GGGTTG-A-CTTAG
562 TGGGC-T--CGGGCATGT-GCTGG-T--G---CCGCATTTTTC--TTCGTCGGG--GCACCAT-C
*** * ** * * ***** * * ***
1659714 GAATACGGAGTTCATTC-CCAGTCTAAGCATA-CGGAGTTCATTCCCAGT-CTAAGATCAGACCA
612 G--T-CGGAG--CA-TCGCC-GGAGAACCTGACCGGCG-GCATTGGGGTTCCGACGATC-G-GGG
* * * * * * * *
1659776 GACCGAGGGTTGCG-GT-AGTACATGCTG-G-GCTCGG-GCATGTGT--TGGTGCCGCATTTTTT
667 GGCCG-GGG--GGGTGTGCGCACATGATGTGCGATGGGTGC-TG-GTACTTG-GCC-C-----TT
* * * * ** * * * ** * *
1659834 TTCATCGGGGCACC-ATCGCCGGAGC-ATCGC-CGAGAACTTGACCGACGGCATT--A-CG-ATT
720 AT-AT-TGGCCCCCTATC-CCTCATCAAAC-CTCGAGAAC-TCA-C-ACCCCCTTAAAGAGCATT
**** * * * * ** * * **
1659892 TCGACGATCGGGGGGGCCGGGGGGTGTGC-GCACATGATGTGCGA-T-GGGTG-CTGGTACT-CA
778 T-GA-GAT-----TTTAC---AGGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGG
* ** ** * * * * ***
1659952 G-CCCTTATATTAGTCCCCTATCCCTCATC-AAA-CTTGGAGAAC-TCACACCCCCTTAAAGAGC
828 GACACTT-T-TT--T--CAAAT-GGTCA-CAAAATCTTGTA-CACTTC-GA----GTT-TTTAGC
*
1660013 ATTTGAGATTTTACAGGTTTGCCGCCAGT
878 ---TGA-ATTTT-----TTTG-TG-CA-T
** * * * ** * * *
1660042 AGCC-ATTAAAGTGTCTGAAATGGGGA-CAC-TTTTTCAA--AT-GGTCACAAAA-TCTTGTACA
1 -GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT-T-C-
**** ** *** ******** ** * ** ***
1660100 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA---T-AAAAAT-A-CAAGGATCACGTCT
54 CGAAAAAATTTTA-AAAAATCCCGAACCGCA--AAAAGTTTCAAAAATCATGAAAAAT-A-GAAA
* ** ** * * ** *** *** * **
1660159 ACTAG--GT-TTGGGGACAAAACTCCTTCGAAAAAATTTTTAAAAAATCCTGATTCGCAAAAAGT
114 ACGAGTCGTCTT-GCCATGAAACTTC-ACG--TGAAGGCTTAAGGGA-CC--ATT-GTATGAA-T
* *** * * * ** * * * * * * *
1660221 TTCAAAAATTATTAAAAATTGAAAACGAGTCGTCTTGCCATGAAACATCATG-TGAAGGCTTAAG
170 TT-ACAAGCCA-TAAAAA-TG---GC-A-TTGGCACG-CA-GAAATATGAAGATG-TGCCTAAAC
** *** *** * * * ***** * * * * * **** * *
1660285 GGACCATTGTATGAATTTGCAAGCCATAAAAATG-GCAT--TGACACACAGAAATATGAAGATGT
224 CCACC-TACCA-CCCTAT-CGATCCA-CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-TG-
* * *** * ** * * *** * * ** * *
1660347 GCTGAAACCCACCTACCAC-CCTATT-GATC-CACGGCTT-GCGCATCCCGTCTCTC-TGGCCGA
283 CCCGCCGCCCCCCGCCCGCTCGT-TTCG-TCGGTTGGCTTAG-GCATACGGAGT-TCAT-TCCCA
* *** ** ** * ** * * * ** * ** * *
1660407 G-GT-AG-T--G-CCCTCCCGCCCGCCTGC--CCGC-CCACCCGC-TCATTTC-GTGGGTTAACT
343 GTCTAAGATCAGACCAGACCG-AGGGTTGCGGCAGCAGGATCAGCAGCA-CGCAGAGGGGGACCC
* * * * * ** * *** * * * * *
1660461 TA-GGCAT-ACGGAGTTCATT-CCCATTCTAAGATCAGACTGGACTAAGGGTTGTG-G-CAGCAG
406 GATCG-ATCCCCG-G--C-TTGCGCA-TC-CCG-CCCCTCTGG-C---CGGCTGAGCGCCCGCAC
* * *** ** ** ** * ** * ***
1660521 GATCG--GCAGCACGCAGA--GGGGCACCCGGGAG---ATCCCCAG-CTTCCGCATCCCGACCCT
459 GCTCGTTTC-GTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTC-TAAGCAT--TGAAGTT
* * * * ** * * *
1660578 C-TGGCCAG-CTGAG-TGCCCGCACGCTCGTTTCCTGGGTTGAC-TTAG-GCATAC-GGAGTTCA
519 CAT---CAGTCTAAGAT--CAG-AC-CACG-----AGGGTTG-CGGCAGCACATGCTGG-GCTC-
*** * * * * * *** * * * ** *
1660637 TTCCCA-GT-CTAAGCATG-CGGAGTTCATTCCTAGTCTAAG-ATCGGATCGAACCGAGGGTTG-
569 -GGGCATGTGCT--G-GTGCCGCA-TT-TTTCTTCGTCGGGGCA-C-CATCG-TCGGAGCATCGC
* * * * * * ** **
1660697 CGACAGCACATG-CTGGGCTCTGGCATGTGCTGGTGT-CGCATTTTTC-TTCGCCGAGGCACCAT
625 CG-GAGAACCTGAC-CGG--C-GGCAT-TG-GGGT-TCCG-A-----CGATCG--G-GGGGCCGG
* ** * * * * * *** *******
1660759 TGCCG-GAGAGC-C-TGACCG-GTCGCATTGGGGTTCCGGCGATCAGGGGGCTCGGGGGGGTGTG
673 GGGGGTGTGCGCACATGA-TGTG-CG-A-T-GGG-TGCTG-G-T-ACTTGGC-CCTTATATTG-G
* * * ***** * *** * ** ****
1660820 CGCACATGAT--GTGCGATGGGTGCT-G-GTACT---TGGCCCTTATATTG-GCACCCT-ATCCC
727 C-CCCCT-ATCCCT-C-ATCAAACCTCGAGAACTCACACCCCCTTA-A-AGAGCA-TTTGAGATT
* **** * * * * * * * *** * * *
1660876 TCATCAAACCT-CGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGAT-TTTACAGGTTTGCTGC
785 TTA-CAGGTTTGC-TG--C-CAGTA-GCCATTAAAGTG--TCTGAAATGGGGACA-CTTT-TTTC
* * * * * * * * ** *
1660938 CAGTAGCCATTAAAGTGTCTG-A-AATGGGGACATTTTTTCAAATGGTCACTTTGAGTACCCTTC
840 AAATGGTCA-CAAAATCT-TGTACACT-TCG--A--GT---------T---TTT-AG----C-T-
1661001 GAGTTTTTAGCTGAATGTTTTTGTGCAT
879 GA------A--T---T-TTTTTGTGCAT
* *
1661029 GCCAACAAAAATACAAGGATCACATCTAGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** ** * *
1661094 AAAAAATCCCGAACCATAAAAAGTTTTGAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCAG
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1661159 GAAACTTCACGTGAAGGCTTAAGGGACCAATT-TATGAATTTACAAGCCATAAAAATGGCATTGG
131 GAAACTTCACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
1661223 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGGTTGTGCATC
195 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
1661288 CCGTCTCTCTGGCCGGCGTAGTG--C-CCG---CCCGCCCGCTCATTTCGTCAGTTGGCTTAGGC
260 CCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
1661347 ATACGGAGTTCATTCCCAGTCTAAGATCA-AACAGGACCGAGGGTTGCGGTAGCAAGATCGGCAG
325 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCAGCAG
* * ** * *
1661411 CACGCAGAGGGGGAGCTGATCGATCCCCAACTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCC
389 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** *
1661476 CGCACGCTCGTTTCGTGGGTTGACTGCGACATACGGAGTTCATTCCCAGTCTAAG-ATTG--G--
454 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAGTT
* *
1661536 ----A--C-----T-AGACCA--AGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGCTGGTG
519 CATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
1661587 CTGTATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
584 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
1661652 GGGTTCTGGA-GATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGAGTGCTGGTACT
649 GGGTTC-CGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
1661716 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCGAACTCACACCCCTTTAAAGAGAAT
712 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
1661781 TTGAGATTTTACAGGTTTGCTGTCAGTGGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCGA
777 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
1661846 GTGGTCAC-AAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTAGTGCAC
842 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
1661898 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
1661962 AAAAAATACTGAACTACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
1662027 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGTC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1662092 ACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
1662157 CATCTCTCTGGCCGACGTAGTGCCCG-C-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
261 CGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
1662220 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAACAGGATCTGTAGCA
326 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCA
** * *
1662285 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACGCCCG
391 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
1662350 CACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-TCTAAG-A-T-CAG---A
456 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAGTTCA
* * * * **
1662408 -C---C---G----GA-C-CGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCCGATGTT
521 TCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
1662460 GCATTTTTCTTCGTCGGGGCACCAGCGTCGGAGCGTCGCCGGAGAACCTGATCGGCGGCATTGGG
586 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* **
1662525 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTATGATGGGTGCTGGTACTTGG
651 GTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1662590 CCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACTCACACCCCCTTAAAAGAGCATT
715 CCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTT-AAAGAGCATT
* * * *
1662654 TGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGAACTCTTTTTTCAAA
778 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * * *
1662719 TGGTCACAAAATCTTGTACAGTTCAAATTTTTAGCTAAATTTTTTTATGCAG
843 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
1662771 GCCAACAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAACA-TT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTT
* *
1662835 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCA
65 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1662900 TGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGG
130 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
1662965 CACGCAGAAATATAAAGATGTACCTAAACCAACCTACCAGCTTATCGATCCACGGCTTGTGCATC
195 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * ** * *
1663030 TCGTCTCTCTGGCCGGCGTAATGCCCG-C-CCGCCCGCTAGCTCGTTTCATCGGTTGGCTTAAGC
260 CCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *** * * * ** **
1663093 ATACGGAGTTCATTCCCCA-TCTAATATCGGATTGGACAGAAGGCTGCGATAGCAATATC-GACA
325 ATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAG-CA
* * * * * *
1663156 GCACACAGAGGGGGACCAG-GCTGAACCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCG
388 GCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* ** * *
1663220 GCCTAACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAG--T---C--T-AAG
452 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAG
* * * * *
1663277 ---ATCAGACT--G----GA-C-CGAGGGTTCCGACAGAACATGCTGGGCTCTGGCATGTGCTGG
517 TTCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * *
1663331 T-CC-CACATTT-TTC-T----------TCGTCGGAGCATCGCCGGAGAACCTGACTGACAGCAT
582 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
* * * * *
1663382 CGGGGTTTCGATGATCGGGGGGGCCGGGGCAGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
647 TGGGGTTCCGACGATC-GGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
1663447 CTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGC
710 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
1663512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
775 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
1663577 AAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTTTTGCAT
840 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * * * *
1663633 GCCAACAAAAATATAAGGATCACATCTACCAAGTTTGCGGCCAAAACTCCATCCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
1663698 AAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
1663763 GAACCTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1663828 ATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
1663893 CGTCTCTCTGGCC-AGCATAGTGCCCGCCAGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCTTAG
261 CGTCTCTCTGGCCGA-CGTAGTGCCCGCC-GCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * ** *
1663957 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATTGGTA
323 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * *
1664022 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCGC
388 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
1664087 CTGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C--T-AAG-
453 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAGT
* *
1664143 --ATC-G-----GACCAGA-C-CGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGT
518 TCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
1664198 GCCGTATTTTTCTTCGTCGTGG-ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
583 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT
* * *
1664262 GGGGTTCCAACGATTGGGGGGTTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
648 GGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
1664327 TGGCCCTTATACTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
712 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
1664391 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAA
777 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
1664455 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTCTTGTGCAT
842 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
1664508 GCCAACAAAAATGCAAGGATCACATCTTCCAAGTCTCGGGCCAAAACACCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * *
1664573 AAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1664638 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * * *
1664703 TCATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTACGCAACC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
1664768 CGCCTCTCTAGCCGACGTAGTG--C-CCG---CCCACCCGCTCATTTCATCGGTTGGCTTAGGCA
261 CGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * ** * * * * *
1664827 TATGGAGTTCATTCTGAATCTTAGATTGGACCAGACCGAGGGTTACAGTAACAGGATTAGCAGCA
326 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCA
* * ** * * * *
1664892 TGCAGAGGGAGACCCGGCCGATCCCCAGCTTGCGAATCCCGCCCCTCTGGTCGGTTGAGCGCCCG
391 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * **
1664957 CACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
456 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGA-AGTTC
* *
1665022 ATTCTCAGTCTAAGATCGGATGA-GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
520 A---TCAGTCTAAGATC--A-GACCAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * * *
1665086 CTGGTGTCACATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTAATCGGGG
578 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
* *
1665151 GCATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
643 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1665216 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTC-AGAACTCACACCCCCTTAAA
707 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAA
* * *
1665279 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAATGTGTCTGAAATGGGG-CTCTTT
771 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1665343 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGAGCAT
836 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1665402 GCCAATAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
1665467 AAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1665532 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
1665597 ATGCAGAAATATGAAGATGTGCCTAAACCAACCTACAACCCTATCGATCCACGGCTTGCGCATGC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
1665662 CGTCTTTCTGGCCTG-TGTAGTGCCTGTCCGCCTGCCCGCCCGCCTGTTCGTTTCGTCGATTGGC
261 CGTCTCTCTGGCC-GACGTAGTG-C---CCGCC-GCCC-CCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
1665726 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAGTAGGATC
319 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * * **
1665791 GGCACCAGGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGTATCCCACCCCTCTGGCCGATTGA
384 AGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
1665856 GCGCCCTCACGCTTGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TT-
449 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTG
* * * *
1665914 -AG---ATCGGACT--G----GACCA--AGGGCTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
514 AAGTTCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * ** *
1665967 TGGTGCCGCATTTTTCTTCGTTGGGGCATCATCGCCGGAGCATCGTCGGAGAATGTAACCGG-GT
579 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG-
* *
1666031 GCATTAGGGTTCCGCCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
643 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1666095 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTCAAG
707 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1666160 AGCATTTGAGATTTTACAAGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
772 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
1666225 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
837 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
1666283 GCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTT
1 GCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
1666348 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAACAGAAAACAAGTCGTCTTGCCA
65 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
1666413 TGAAACTTTATGTGAAGGCTTAAGGGACCACTGTCTGAATTTACAAGCCATAAAAATGGCATTGG
130 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * ** *
1666478 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCATAGCTTACGCATC
195 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
1666543 CCGTCTCTCTGGCCGATGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAA
260 CCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
1666608 GCATACGGAGTTCATTCCCAGTCCT-AGGTCAGACCGGATCAAGGGTTACAGCAGCAGGATC-G-
323 GCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGC
* * * *
1666670 ATGGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
387 A--GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
1666735 CGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATATG
450 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TG
* *
1666800 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTGGGGC
514 AAGTTCA-T--CAGTCTAAGATCAGACC--A-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
1666865 ATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACAATCGTCGGAGCATCGCCAGAGAACTTGAC
573 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * *
1666930 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGTGGGTGTGCACACATGATGTGCGATAGG
638 CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
1666995 TGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACT
702 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
1667060 T-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
767 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1667124 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCAT
832 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
1667187 GCCAATAAAAATACAAGGATCACGCCTACAAAGTTTGGGG-CTAAACTCCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
1667251 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCAT
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
1667316 GAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
131 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1667381 ATGCAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCC
196 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
1667446 TGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGG
261 CGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
1667511 CATACGGAGTTCATTCCCTA-TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGTA
324 CATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * * * * ** * *
1667575 GCATGTAGAAGGGGACCC-AGTTGATCCCCGACTTGCGCATCCTGTGCTTCTGGCCGGCTGACCG
388 GCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
1667639 CCCGCACGCTCGTTTC---AG-T--C-TAAGCATACGGAGTTCATTCCTAGTCTAAG-ATTG--G
452 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAG
1667694 ------A--C------CAGACCA--AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
517 TTCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * *
1667743 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
582 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
* * * *
1667808 TGGGGTTTCGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTAC
647 TGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
**
1667873 TCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
711 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
1667938 TTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
776 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
1668003 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAAATTTTTTGTCCAT
841 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * * * * *
1668057 GCCAAGAAAAATACAAGGATCACGTCTAAAAAGATTGGGTCTAAAACTCCTTTCGAAACAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
1668122 AAAAAATCTCGAACCGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAACGAGACGTCTTGCCA
66 AAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
1668186 TGAAACTTCACATTAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAGAAATGGCATTGG
130 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
1668251 CATGCAGAAATATGAAGCTGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
195 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*** * **
1668316 CCGTCTCTCTTATCGGCGTAGTGCCCGCCTGCTTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
260 CCGTCTCTCTGGCCGACGTAGTGCCCGCC-GC-CCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** *
1668381 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGTGGCAGCAGGATC-GAC
323 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAG-C
* * *
1668445 AGCACGCAAAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGC
387 AGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * ** * * *
1668509 TCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGCATACGG
451 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TGA
*
1668574 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATG-TCGGGCTTGGGC
515 AGTTCA-T--CAGTCTAAGATCAGACC--A-CGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGC
* *
1668638 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACTTGAC
573 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * * * * *
1668692 CGGCAGCATTGGGGTTCTGATGATCGGGGGGTCGGGGGAGTGGGCGCACAAGATGTGCAATGGGT
638 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
1668757 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
703 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
**
1668822 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATGGGGACAC
768 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1668887 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
833 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
1668949 GCCAACAAAAATACAAGGATCATGTCAAACAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
1 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
1669014 AAAAAATACCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CAC
66 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-
* *
1669078 TAAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
130 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * ** *
1669143 CATGCAAAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCATAGCATGCGCATC
195 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * *
1669207 CCGTCTCTCTGGCCGACGTAGTGCTTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
260 CCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * **
1669272 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTATGGCAGCAGGAT---C-
323 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
*
1669333 G---GCAGAGGGGGA--C--T---T----GGC---CG-AT-------CT-T---CGGCTTA-CGC
388 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
1669368 ATC-C-CGCTCGTTTCGTAGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCT----A-T---G
453 -CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAG
* * * *
1669423 ---ATCA----AA-CT-AGA-C-CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGT
517 TTCATCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** ** * * * ** * **
1669477 TGCCACATTTTTCTTCACCCTGGCACGATCGCCAGAGCATCATCAGAGAACCTGACCAACGGCAT
582 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
* * * *
1669542 TGGGGTTCCGATGATCGGGGTGGCC-GGGGGGTGTGCGCACATGATGTCCGATGAGTGCTGCTAC
647 TGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
1669606 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
711 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
1669671 TTTGAGATTTTGCAGGTTCGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCA
776 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1669736 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
841 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
1669783 CGGGGCGAAA
Statistics
Matches: 10679, Mismatches: 1890, Indels: 1568
0.76 0.13 0.11
Matches are distributed among these distances:
830 59 0.01
831 1 0.00
833 1 0.00
834 1 0.00
835 3 0.00
836 2 0.00
837 2 0.00
838 1 0.00
839 30 0.00
840 143 0.01
841 259 0.02
842 161 0.02
843 142 0.01
844 5 0.00
845 37 0.00
846 1 0.00
847 10 0.00
848 2 0.00
851 1 0.00
852 2 0.00
854 1 0.00
855 1 0.00
856 43 0.00
857 5 0.00
858 7 0.00
859 4 0.00
860 1 0.00
861 165 0.02
862 357 0.03
863 2 0.00
864 1 0.00
865 6 0.00
866 218 0.02
867 188 0.02
868 399 0.04
869 286 0.03
870 176 0.02
871 600 0.06
872 538 0.05
873 236 0.02
874 403 0.04
875 317 0.03
876 54 0.01
877 139 0.01
878 259 0.02
879 201 0.02
880 214 0.02
881 73 0.01
882 262 0.02
883 6 0.00
884 12 0.00
885 7 0.00
886 4 0.00
887 6 0.00
888 7 0.00
889 2 0.00
890 5 0.00
891 154 0.01
892 414 0.04
893 109 0.01
894 516 0.05
895 37 0.00
896 11 0.00
897 12 0.00
898 17 0.00
899 34 0.00
900 8 0.00
901 11 0.00
902 368 0.03
903 51 0.00
904 446 0.04
905 661 0.06
906 254 0.02
907 14 0.00
908 4 0.00
909 18 0.00
910 6 0.00
911 8 0.00
912 14 0.00
913 196 0.02
914 273 0.03
915 9 0.00
916 6 0.00
917 5 0.00
918 11 0.00
919 15 0.00
920 13 0.00
921 7 0.00
922 1 0.00
923 3 0.00
924 3 0.00
925 8 0.00
926 6 0.00
927 6 0.00
928 3 0.00
929 88 0.01
930 12 0.00
931 6 0.00
932 8 0.00
933 5 0.00
934 10 0.00
935 11 0.00
936 10 0.00
937 4 0.00
938 5 0.00
939 1 0.00
940 9 0.00
941 21 0.00
942 11 0.00
943 26 0.00
944 10 0.00
945 3 0.00
946 5 0.00
947 5 0.00
948 3 0.00
949 4 0.00
950 6 0.00
951 3 0.00
952 1 0.00
953 3 0.00
954 13 0.00
955 6 0.00
956 6 0.00
957 9 0.00
958 40 0.00
959 29 0.00
960 16 0.00
961 19 0.00
962 29 0.00
963 31 0.00
964 18 0.00
965 22 0.00
966 18 0.00
967 29 0.00
968 24 0.00
969 18 0.00
970 7 0.00
971 13 0.00
972 9 0.00
973 7 0.00
974 13 0.00
975 15 0.00
976 13 0.00
977 15 0.00
978 14 0.00
979 12 0.00
980 14 0.00
981 15 0.00
982 21 0.00
983 23 0.00
984 27 0.00
985 23 0.00
986 11 0.00
987 11 0.00
988 5 0.00
989 6 0.00
990 4 0.00
991 1 0.00
994 1 0.00
995 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCA
CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTGAAGTTCA
TCAGTCTAAGATCAGACCACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
Found at i:1659635 original size:131 final size:131
Alignment explanation
Indices: 1659401--1659657 Score: 397
Period size: 131 Copynumber: 2.0 Consensus size: 131
1659391 CCGCCCGCCC
*
1659401 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGA
* * * * *
1659466 GGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCGTCC
66 GGATTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCGTCC
1659531 T
131 T
* * ** *
1659532 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGA
* *
1659597 GGATTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
66 GGATTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGC
1659658 ATCCCGCCCC
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 113 1.00
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (131 bp):
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGA
GGATTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCGTCC
T
Found at i:1659752 original size:26 final size:26
Alignment explanation
Indices: 1659716--1659766 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1659706 TGACTTAGGA
1659716 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1659742 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1659767 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1660659 original size:26 final size:26
Alignment explanation
Indices: 1660623--1660675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1660613 GTTGACTTAG
1660623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1660649 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1660675 G
1 G
1660676 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1668483 original size:871 final size:871
Alignment explanation
Indices: 1659737--1669782 Score: 11853
Period size: 871 Copynumber: 11.5 Consensus size: 871
1659727 ATTCCCAGTC
* *
1659737 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
1659802 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTTCATCGGGGCACCATCGCCGGAGCATCGCC-G
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* ** * *
1659866 AGAACTTGACCGACGGCATTACGATTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
** * * * *
1659930 GTGCGATGGGTGCTGGTACTCAGCCCTTATATTAGTCCCCTATCCCTCATCAAACTTGGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1659995 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1660060 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * *
1660124 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACTAGGTTTGGGGACAAAACTCCTT-CGAA
391 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
1660188 AAAATTTTTAAAAAATCCTGATTCGCAAAAAGTTTCAAAAATTATTAAAAATTGAAAACGAGTCG
456 AAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCG
* * *
1660253 TCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** *
1660318 GGCATTGACACACAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATTGATCCACGGC
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC
*
1660382 TTGCGCATCCCGTCTCTCTGGCCGAG-GTAGTGCCCTCCCGCCCGCCTGCCCGCCCACCCGCTCA
648 TTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTG----CCCG-CCGCC-GCCCG----CCCGCTCG
* ** * * **
1660446 TTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACTGGACTAAGGGTT
702 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * ** * * *
1660511 GTGGCAGCAGGATCGGCAGCACGCAGAGGGGCACCCGGGAGATCCCCAGCTTCCGCATCCCGACC
767 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * *
1660576 CTCTGGCCAGCTGAGTGCCCGCACGCTCGTTTCCTGGGTTGACT
832 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-C--AGTTG-CT
*
1660620 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCTAGTCTAAGATCGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------C--A--G
* * * *
1660685 AACCGAGGGTTGCGACAGCACATGCTGGGCTCTGGCATGTGCTGGTGTCGCATTTTTCTTCGCCG
41 -ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * *
1660750 AGGCACCATTGCCGGAG-A--GCC--TG-ACC-G---GTC-GCATTGGGGTTCCGGCGATC-AGG
105 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
*
1660803 GGGCTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCAC
170 GGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1660868 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
234 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
1660933 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCAAATGGTCAC----T-TTGA
299 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT--
* *
1660992 GTACCCTTCGAGTTTTTAGCTG-AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
362 GTACACTTCGAGTTTTTAGCTGAAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* **
1661056 AGCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTT
426 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTT
* * *
1661121 GAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGAC
490 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
1661186 CAATT-TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
555 C-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
1661250 ACCCACCTACCACCCTATTGATCCACGGGTTGTGCATCCCGTCTCTCTGGCCGGCGTAGT----G
619 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* *
1661311 -C-CCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
684 CCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
1661374 CAAACAGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGAGCTGATCGATCCCC
749 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
** * * *
1661439 AACTTGCGCATCCCGCCCATCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-
814 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC---AGTTG-CT
** ** * * * *
1661500 TGCGACATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCGACAGCACATGT
1 TAAG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGC
* * * ** *
1661565 TGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCACCG
65 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* *
1661630 GAGAACCTGACCGACGGCATTGGGGTTCTGGA-GATTGGGGGGGCCGGGGGGGTGTGCGCACATG
130 GAGAACCTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * *
1661694 ATGTGCGGTGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
1661759 CTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGTCAGTGGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * * *
1661824 TAAATGGGGACATTTTTTTCGAGTGGTCAC-AAATCTTGAACACTTTGAGTTTTTAGCTG-AATT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
*
1661887 TTTTAGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCC
389 TTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
1661951 GAAAAAATTTTAAAAAATACTGAACTACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGT
453 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGT
1662016 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
517 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * ** * *
1662081 ATGGTATTGTCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGG
582 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
1662146 CTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCG-C-CCGCCCGCCCGCTCATTTCGTCGGT
647 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGT
* ** *
1662209 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAACAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * *
1662274 GATCTGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
777 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1662339 CTGAACGCCCGCACACTCATTTCGTGGGTTGACT
842 CTGAGCGCCCGCACGCTCGTTTC---AGTTG-CT
* * * * *
1662373 TAGGCATACGGAGTTCATTCTCA-TCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * ** * * *
1662437 GGGCTCGGGCATGTGCCGATGTTGCATTTTTCTTCGTCGGGGCACCAGCGTCGGAGCGTCGCCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
1662502 AGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGTACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
**
1662567 GTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAAC
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAAC
* *
1662631 TCACACCCCCTTAAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCT
260 TCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
1662696 GAAATGGGAACTCTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAATTTTTAGCT-AAATT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA-T
* * * *
1662760 TTTTTATGCAGGCCAACAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTCCTTCC
388 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
1662825 GAAAAACA-TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAG
453 GAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAG
* *
1662889 TCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
1662954 AATGGCATTGGCACGCAGAAATATAAAGATGTACCTAAACCAACCTACCAGCTTATCGATCCACG
581 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** *
1663019 GCTTGTGCATCTCGTCTCTCTGGCCGGCGTAATGCCCG-C-CCGCCCGCTAGCTCGTTTCATCGG
646 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** * * * **
1663082 TTGGCTTAAGCATACGGAGTTCATTCCCCA-TCTAATATCGGATTGGACAGAAGGCTGCGATAGC
711 TTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
** * * * * * *
1663146 AATATCGACAGCACACAGAGGGGGACCAGG-CTGAACCTCGGCTTGCGCATCCCGCCCCTCTGGT
775 AGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* ** * *
1663210 CGGCTGAGCGGCCTAACGCTCATTTCGTGGGTTGACT
839 CGGCTGAGCGCCCGCACGCTCGTTTC---AGTTG-CT
* * ** * * *
1663247 TAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTCCGACAGAACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
1663312 GGGCTCTGGCATGTGCTGGTCCCACATTTTTC-T--TC---G-----T---CGGAGCATCGCCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * * * * * *
1663363 AGAACCTGACTGACAGCATCGGGGTTTCGATGATCGGGGGGGCCGGGGCAGGTGTGCACACATGA
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGA
* *
1663428 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
1663493 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1663558 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-ATT
* * * * * *
1663623 TTTTTTGCATGCCAACAAAAATATAAGGATCACATCTACCAAGTTTGCGGCCAAAACTCCATCCA
389 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
1663688 AAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTC
454 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTC
* *
1663753 GTCTTGCCATGAACCTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1663818 TGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCTTATCGATCCACGGC
583 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
1663883 TTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCCCGCCAGCCCGCCCGACCGCTCGTTTCGTCGG
648 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-G-CCGCCCGCCCGCTCGTTTCGTCGG
* ** *
1663948 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * *
1664013 GGATTGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCA
776 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
1664078 GCTGAGCGCCTGCAAGCTCGTTTCATGGGTTGACT
841 GCTGAGCGCCCGCACGCTCGTTTCA---GTTG-CT
* * *
1664113 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* *
1664178 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGTGG-ACCATCGCCGGAGCATCGCCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * **
1664242 AGAACCTGACCGACGGCATTGGGGTTCCAACGATTGGGGGGTTCGGGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
1664307 GTGCGATGGGTGCTGGTACTTGGCCCTTATACTGG-CCCCTATCCCTCATCAAACCTCAAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1664371 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1664436 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTG-AATTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * * * *
1664499 CTTGTGCATGCCAACAAAAATGCAAGGATCACATCTTCCAAGTCTCGGGCCAAAACACCTTCCGA
391 -TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
1664564 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCG
455 AAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTCG
1664629 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1664694 GGCATTGGC-T-CATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGG
584 GGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
1664757 CTTACGCAACCCGCCTCTCTAGCCGACGTAGT----G-C-CCGCCCACCCGCTCATTTCATCGGT
647 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGT
* ** * * ** * * * * *
1664816 TGGCTTAGGCATATGGAGTTCATTCTGAATCTTAGATTGGACCAGACCGAGGGTTACAGTAACAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
** * * * * * *
1664881 GATTAGCAGCATGCAGAGGGAGACCCGGCCGATCCCCAGCTTGCGAATCCCGCCCCTCTGGTCGG
777 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
1664946 TTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACT
842 CTGAGCGCCCGCACGCTCG--TT-TCAGTTG-CT
* *
1664980 TAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGATGA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C--AGA-C------
* * *
1665045 GACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCG
43 --C-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ** * * *
1665110 GGGTACCATCGTCGGAGCATCGTCGGAGAACCTAATCGGGGGCATTAGGGTTCCGGCGATCAGGG
105 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
1665175 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCC
170 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1665239 CTATCCCTCATCAAACCTTC-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
235 CTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
1665303 GCTGCTAGTAGCCATTAATGTGTCTGAAATGGGG-CTCTTTTTTCAAATGGTCACAAAATCTTGT
299 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
1665367 ACACTTAGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAATAAAAATACAAGGATCACGTCTACC
364 ACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
1665432 AAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAGTCCCGAACCGTAAAAAGTTTCAAA
429 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAA
*
1665497 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
493 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
1665562 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCA
558 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
1665627 ACCTACAACCCTATCGATCCACGGCTTGCGCATGCCGTCTTTCTGGCCTGTGTAGTGCCTGTCCG
623 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG
* *
1665692 CCTGCCCGCCCGCCTGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
687 CC-GCCCGCCCG-C---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * *
1665757 ATCAGATCAAACCGAGGGTTGCGGCAGTAGGATCGGCACCAGGTAGAGGGGGACCCGGTCGATCC
747 ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * ** * * *
1665822 CCAGCTTGCGTATCCCACCCCTCTGGCCGATTGAGCGCCCTCACGCTTGTTTCGTGCGTTGACT
812 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC---AGTTG-CT
* * * ** * * *
1665886 TAGGCATACGGAGTTCATTCCCAGTCTTAGATCGGACTGGACCAAGGGCTGCGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * *
1665951 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCATCATCGCCGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
** * * * *
1666016 AGAATGTAACCG-GGTGCATTAGGGTTCCGCCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
131 AGAACCTGACCGACG-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
*
1666079 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
195 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1666144 TCACACCCCCTTCAAGAGCATTTGAGATTTTACAAGTATGCTGCCAGTAGCCATTAAAGTGTCTG
260 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1666209 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTT
* *
1666274 TTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG
390 TTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
1666339 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAACAGAAAACAAGTC
454 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
1666404 GTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCACTGTCTGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * **
1666469 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCATAGC
583 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * *
1666534 TTACGCATCCCGTCTCTCTGGCCGATGTAGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGG
648 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
1666599 TTGGCTTAAGCATACGGAGTTCATTCCCAGTCCT-AGGTCAGACCGGATCAAGGGTTACAGCAGC
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
*** * ** *
1666663 AGGATCGATGGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
775 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
1666728 AGCTGAGCGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCAT
840 GGCTGAGCGCCCGCACG--C---TCGT---TT--C--A-G--T------TGC-T
* *
1666782 TCCCAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAG
1 T---A-----AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * * * *
1666847 CACATGCTGGGCTGGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACAATCGTCGGAGC
58 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * * * *
1666912 ATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGTGGGTGTGCA
123 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* *
1666977 CACATGATGTGCGATAGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
188 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
1667042 TGAGAACTCACACCCACTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
253 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
1667106 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCT
318 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
1667171 GAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGCCTACAAAGTTTGGGG-CTAAACTC
383 GAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
1667235 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
448 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAATCATGAAAAATAGAAAA
* *
1667300 CGAGTCGTCTCGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
512 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
1667365 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATC
577 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
1667430 CACGGCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTT
642 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-GCCGCCCGCCCGCTCGTTT
* *
1667495 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCGGACCGGACCGAGGGTTGC
705 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * * * * * ** *
1667559 GGCAGCAAGATCGGTAGCATGTAGAAGGGGACCCAGTTGATCCCCGACTTGCGCATCCTGTGCTT
769 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCT
*
1667624 CTGGCCGGCTGACCGCCCGCACGCTCGTTTCAG-T-C-
834 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAGTTGCT
* ** *
1667659 TAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* *
1667724 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
1667789 AGAACCTGACCGACGGCATTGGGGTTTCGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * **
1667854 GTGTGATGGGTGTTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1667919 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTTTGA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1667984 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAAATTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * ** * * * *
1668049 TTGTCCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGATTGGGTCTAAAACTCCTTTCGAA
391 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
1668114 ACAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAGAAAATCGTGAAAAATAGAAAACGAGACGT
456 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTA-AAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
1668179 CTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAGAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1668244 GCATTGGCATGCAGAAATATGAAGCTGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *** *
1668309 GTGCATCCCGTCTCTCTTATCGGCGTAGTGCCCGCCTGCTTGCCCGCCCGCTCGTTTCGTCGGTT
650 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GC-CGCCCGCCCGCTCGTTTCGTCGGTT
* ** ** *
1668374 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGTGGCAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * *
1668439 ATCGACAGCACGCAAAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCAGC
778 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
1668504 TGAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGT
843 TGAGCGCCCGCACG--C---TCGT---TT--C--A-G--T-T---G-------C---T
*
1668562 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATG-
1 -TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGC
* *
1668626 TCGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---G--T---C
65 T-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* * * * * * * * *
1668680 GGAGAACTTGACCGGCAGCATTGGGGTTCTGATGATC-GGGGGGTCGGGGGAGTGGGCGCACAAG
129 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
*
1668744 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
**
1668809 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1668874 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT
* * * *
1668939 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCAAACAGGTTTGGGGCCAAAACTCCTTCCG
389 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
1669004 AAAAAATTTTAAAAAATACCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
454 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
1669069 GTCTTG-CACTAAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
518 GTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* **
1669133 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCATAG
582 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * *
1669197 CATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCACCCGCCCGCCCGCTCGTTTCGTCA
647 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-GCCGCCCGCCCGCTCGTTTCGTCG
* ** * **
1669262 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTATGGCAGC
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
** * ** *
1669327 AGGAT---C-G---GCAGAGGGGGACTTGGCCGATCTTCGGCTTACGCATCCCG-----CT---C
775 AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * *
1669377 -G-T-----TTCGTA-G---G-TT--G--ACT
840 GGCTGAGCGCCCGCACGCTCGTTTCAGTTGCT
* * * * *
1669393 TAAGCATACGGAGTTCATTCCCAGTCTATGATCAAACTAGACCGAGGGTTACGACAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * ** ** * * ** *
1669458 GGGCTCGGGCATGTGCTGTTGCCACATTTTTCTTCACCCTGGCACGATCGCCAGAGCATCATCAG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
1669523 AGAACCTGACCAACGGCATTGGGGTTCCGATGATCGGGGTGGCC-GGGGGGTGTGCGCACATGAT
131 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
1669587 GTCCGATGAGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1669652 CACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTCGTTGCCAGTAGCCATTAAAGTGTCTGA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1669717 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
1669781 TT
391 TT
1669783 CGGGGCGAAA
Statistics
Matches: 7959, Mismatches: 949, Indels: 553
0.84 0.10 0.06
Matches are distributed among these distances:
830 98 0.01
831 2 0.00
833 1 0.00
834 1 0.00
836 1 0.00
838 1 0.00
840 7 0.00
841 226 0.03
842 6 0.00
849 1 0.00
855 69 0.01
856 4 0.00
858 3 0.00
860 2 0.00
861 161 0.02
862 355 0.04
863 1 0.00
865 5 0.00
866 400 0.05
867 209 0.03
868 224 0.03
869 315 0.04
870 163 0.02
871 577 0.07
872 262 0.03
873 76 0.01
874 405 0.05
875 322 0.04
876 53 0.01
877 102 0.01
878 176 0.02
879 117 0.01
880 213 0.03
881 249 0.03
882 261 0.03
883 41 0.01
884 36 0.00
885 6 0.00
886 4 0.00
887 5 0.00
888 4 0.00
889 3 0.00
890 4 0.00
891 140 0.02
892 404 0.05
893 100 0.01
894 504 0.06
895 12 0.00
896 10 0.00
897 272 0.03
898 25 0.00
899 19 0.00
900 172 0.02
901 8 0.00
902 365 0.05
903 39 0.00
904 380 0.05
905 95 0.01
906 171 0.02
908 2 0.00
909 70 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCAGTTGCT
Found at i:1669055 original size:892 final size:891
Alignment explanation
Indices: 1667654--1669333 Score: 2388
Period size: 892 Copynumber: 1.9 Consensus size: 891
1667644 ACGCTCGTTT
* **
1667654 CAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAC
1 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAC
1667719 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
66 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---C--CACC---GCATC
* * * * *
1667784 GTCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGAGGGGGCCGGGGGGGTGTGCGCAC
123 GTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCAC
* * **
1667849 ATGATGTGTGATGGGTGTTGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
187 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
1667914 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
1667979 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * *
1668044 ATTTTTTGTCCATGCCAAGAAAAATACAAGGATCACGTCTAAAAAGATTGGGTCTAAAACTCCTT
382 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTT
* * * * *
1668109 TCGAAACAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTAGAAAATCGTGAAAAATAGAAAACG
447 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTA-AAAATCATGAAAAATAGAAAACG
* * * *
1668173 AGACGTCTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
1668238 GAAATGGCATTGGCATGCAGAAATATGAAGCTGTCCCTAAACCCACCTACCACCCTATCGATCCA
576 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *** * ** **
1668303 CGGCTTGTGCATCCCGTCTCTCTTATCGGCGTAGTGCCCGCCTGCTTGCCCGCCCGCTCGTTTCG
641 CAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCG
* ** * **
1668368 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGTGGC
706 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGC
* *
1668433 AGCAGGATCGACAGCACGCAAAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTG
771 AGCAGGATCGATAGCACGCAAAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTTTG
1668498 GCCAGCTGAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTC
836 GCCAGCTGAGC-CCCGCACGCTCATTTCGT-GGTTGACTTAGGCATA-AGAGTTCATTC
* *
1668557 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCA
1 C-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* *
1668622 CATG-TCGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-CA-C-CATCGTCGGA
65 CATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCCACCGCATCGTCGGA
* * * * * *
1668683 GAACTTGACCGGCAGCATTGGGGTTCTGATGATC-GGGGGGTCGGGGGAGTGGGCGCACAAGATG
129 GAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATG
*
1668747 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* **
1668812 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1668877 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
1668942 TGTGCATGCCAACAAAAATACAAGGATCATGTC-AAACAGGTTTGGGGCCAAAACTCCTTCCGAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAA-AAGTTTGGGGCCAAAACTCCTTCCGAA
* *
1669006 AAAATTTTAAAAAATACCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1669071 CTTG-CACTAAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 CTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1669135 GGCATTGGCATGCAAAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCATAGCA
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCT
** *
1669199 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGT
* ** *
1669264 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTATGGCAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAG
1669329 GATCG
776 GATCG
1669334 GCAGAGGGGG
Statistics
Matches: 695, Mismatches: 76, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
891 153 0.22
892 392 0.56
893 43 0.06
897 1 0.00
898 2 0.00
903 2 0.00
904 102 0.15
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCCACCGCATCGTCGGAGA
ACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCG
ATAGCACGCAAAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCAGCTGAG
CCCCGCACGCTCATTTCGTGGTTGACTTAGGCATAAGAGTTCATTC
Found at i:1670969 original size:309 final size:308
Alignment explanation
Indices: 1670404--1670974 Score: 971
Period size: 309 Copynumber: 1.9 Consensus size: 308
1670394 GAGGGGTTGG
*
1670404 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
1 GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
* *
1670469 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
*
1670534 AGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
131 AGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCAA
* * *
1670599 GTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATGACGTCTAACAAGTTTGGG
196 GTTTTTACCTGAATGTTTTTGTGCATGCCAACAAAAATACAACGATCACGTCTAACAAGTTTAGG
1670664 GCACCATCGCCGGATGACATTGGGGTTTCGGTGATCGGGGCGGCCGGT
261 GCACCATCGCCGGATGACATTGGGGTTTCGGTGATCGGGGCGGCCGGT
* * *
1670712 GGGGGTGTGAGTACTTGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGGCCCCTATCCC
1 GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCC
*
1670777 TCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAG
65 TCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
* * *
1670842 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCG
130 TAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCA
* * * *
1670907 AGTTTTTAGCTGAATGTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAG
195 AGTTTTTACCTGAATGTTTTTGTGCATGCCAACAAAAATACAACGATCACGTCTAACAAGTTTAG
1670972 GGC
260 GGC
1670975 CAAAACTCCT
Statistics
Matches: 244, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
308 48 0.20
309 196 0.80
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (308 bp):
GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
CATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
AGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCAA
GTTTTTACCTGAATGTTTTTGTGCATGCCAACAAAAATACAACGATCACGTCTAACAAGTTTAGG
GCACCATCGCCGGATGACATTGGGGTTTCGGTGATCGGGGCGGCCGGT
Found at i:1671617 original size:31 final size:31
Alignment explanation
Indices: 1671579--1671647 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
1671569 TGAAATGGGG
1671579 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1671610 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1 ACACTTTTTTCAAATGGTCACAAAATCTTGT
1671641 ACACTTT
1 ACACTTT
1671648 GAGTTTTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (31 bp):
ACACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:1673510 original size:464 final size:464
Alignment explanation
Indices: 1672635--1673535 Score: 1473
Period size: 464 Copynumber: 1.9 Consensus size: 464
1672625 ATGTGTGATA
1672635 GGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCC
* *
1672700 CTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1672765 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATATTATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCAT
** * * *
1672830 GCCAACAAAAATATGAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCAAAAAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACAAAATTAGGGCCCAAAACTCCTTCCAAAAAAATTTT
* * *
1672895 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
261 AAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* ** * *
1672960 GAAACTTCATGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
326 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAGGC
* *
1673025 AAGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCTACTACCTGCGCATTA
391 AAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACTACCTGCGCATTA
1673090 GGATGTACT
456 GGATGTACT
* *
1673099 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCC
* * *
1673164 CTTAAAGGGCATTTGAGATTTTACAGGTTTGCT-ACAGGTAGGCATTAAAGTGTTTGAAATGGGG
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACA-GTAGCCATTAAAGTGTCTGAAATGGGG
* *
1673228 ACACTTTTTTCAAATGGTCACAAAATCTTATACA-TTTCGAGTTTTTAGCTGATTTTTTTTATGC
130 ACACTTTTTTCAAATGGTCACAAAATATTATACACTTT-GAGTTTTTAGCTGAATTTTTTTATGC
* * * *
1673292 ATGCCACCAAAAATACAAGGATCACGTCTACAAAATTAGGGGCCAAAACTCCTTTCGAAAAAATT
194 ATGCCAACAAAAATACAAGGATCACGTCTACAAAATTAGGGCCCAAAACTCCTTCCAAAAAAATT
*
1673357 TTAAAAAATCCAGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
259 TTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
1673422 ATGAAACTTCCCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAG
324 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAG
*
1673487 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
389 GCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
1673536 ACCACAGCTT
Statistics
Matches: 402, Mismatches: 33, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
463 5 0.01
464 397 0.99
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (464 bp):
GGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATATTATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCAT
GCCAACAAAAATACAAGGATCACGTCTACAAAATTAGGGCCCAAAACTCCTTCCAAAAAAATTTT
AAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAGGC
AAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACTACCTGCGCATTA
GGATGTACT
Found at i:1673817 original size:26 final size:26
Alignment explanation
Indices: 1673781--1673833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1673771 GATGACATAG
1673781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1673807 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1673833 G
1 G
1673834 ATCAGGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1676483 original size:26 final size:26
Alignment explanation
Indices: 1676447--1676499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1676437 GTTGACTTAG
*
1676447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1676473 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1676499 G
1 G
1676500 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1676632 original size:17 final size:17
Alignment explanation
Indices: 1676610--1676648 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
1676600 AGAACCTGAC
1676610 CAGCGGTATTGGGGTTT
1 CAGCGGTATTGGGGTTT
1676627 CAGCGGTATTGGGGTTT
1 CAGCGGTATTGGGGTTT
1676644 CAGCG
1 CAGCG
1676649 AGTGTGCGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.13, C:0.15, G:0.41, T:0.31
Consensus pattern (17 bp):
CAGCGGTATTGGGGTTT
Found at i:1677378 original size:26 final size:26
Alignment explanation
Indices: 1677342--1677394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1677332 GTTGACTGCG
*
1677342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1677368 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1677394 G
1 G
1677395 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1678267 original size:26 final size:26
Alignment explanation
Indices: 1678230--1678282 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1678220 TTTGACTTAG
* *
1678230 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAATCTAA
1678256 GCATAC-AGAGTTAATTCCCAATCTAA
1 GCATACGA-AGTTAATTCCCAATCTAA
1678282 G
1 G
1678283 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAATCTAA
Found at i:1678566 original size:888 final size:891
Alignment explanation
Indices: 1673099--1680401 Score: 8530
Period size: 905 Copynumber: 8.2 Consensus size: 891
1673089 AGGATGTACT
*
1673099 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
1673164 CTTAAAGGGCATTTGAGATTTTACAGGTTTGCT-ACAGGTAGGCATTAAAGTGTTTGAAATGGGG
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
1673228 ACACTTTTTTCAAATGGTCACAAAATCTTATACATTTCGAGTTTTTAGCTGATTTTTTTTATGCA
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * *
1673293 TGCCACCAAAAATACAAGGATCACGTCTACAAAATTAGGGGCCAAAACTCCTTTCGAAAAAATTT
195 TGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
1673358 TAAAAAATC-CAGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
260 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1673422 ATGAAACTTCCCGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAG
324 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
1673487 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCAT
389 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
1673552 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGTCCGCCCGCTCGCCCATTTCGTCGATTGG
454 CCCGTCTCTCTGGCCGGCGTA------G--TG-C---CCGCCCGCTCG----TTTCGTCGGTTGG
* * * * * ** *
1673617 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTTGTAGCAGTAGGAT
503 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
1673682 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
568 CGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
1673747 AGAGCCCGCACACTCATTTCGTGGGATGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
633 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
1673812 TGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACTGAGGGTTGCGACAGTACATGCT-GGCTCGG
698 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* *
1673876 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTA
763 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* * * * *
1673941 ATCGGCGGCATTAGGGTTCCGACGATC-GAGGGGCCAGGGGGTGTGCGCACATGATGTGCGATG
828 ACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* ** **
1674004 GGTGCTGGTACTTTGCCCTTATATTGAACCCCTATCCCTCATCAAACCTTTAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1674069 CTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
1674134 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1674199 GCCAAGAAAAATAAAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTT
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** * * * *
1674263 GAAAAATCCCGAACCACAAAAA-TTTCTGAAATTCATGAAAAATAGAAAACAAGTCGTCTTGCCT
261 AAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
1674327 TGAAACTTTACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGTATTGG
325 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * * ** *
1674392 CACATAAAAATATGAAGATCTGCCTAAACCCACCTACTGCCCTATCGATCCACGACTTGCGCATC
390 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
1674457 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGCCCGCTCATTTCATCGGTTGGCTTAG
455 CCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCT----CG----TTTCGTCGGTTGGCTTAG
* *
1674522 GCATACGGAGTTCATTCCCTATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGGTA
508 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * ** *
1674587 GCATGTAGAAGGGGACCC-AGTCAATCCCCGACTTGCGCATCCCGTGCTTCTGGCCGGCTGA---
573 GCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
1674648 CC-G--C-C-CG---C--------AC----GC-T-C--A--T--TT--CAGTCTAAGCATACGGA
637 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * *
1674683 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATGGTACATGTTGGGCTCGGGCAT
702 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * * *
1674748 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAAAACCTGATCG
767 GTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * * ** * * * *
1674813 ACGGCATTGGGATTCTGGTGATCGGGGGGGTCGAGGGGTGTGCACACATGATGTGTGATG
832 GCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
1674873 GGTGCTGCTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1674937 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1675002 CAC-TTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
1675066 ACCAACAAAAATACAGGGATAACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
1675131 CAAAAATCAT-GAACCTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGA---GTCTTGCCA
261 AAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
1675192 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
325 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
1675257 CATGCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACTGCTTGCGCAAC
390 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
1675322 CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGTCCGTTCTTTTCGTCGGTTGGCTTAGGCAT
455 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--T-CG----TTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * ** *
1675387 ACGGAATTCATTCCCAATCTATGATCAGACCAGATCGAGGGTTGCAGCAGCAAGATTGACAGCAT
512 ACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * * * * ** * * *
1675452 GCAGAAGGGGACCCGAAT-GATCCTCGGCTTACGCATCCCACCCCTCTGGTTGACTGAGTGCCCG
577 GTAGAGGGGGACCCG-ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
* * ** * *
1675516 CATGCTCGTTTCATGTCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCCAGAGTTC
641 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * * *
1675581 ATTCCCAGTCTAAGATCAGACTGGACCGAGTGTTACAACAGCACATGGTGGGCTTGGGCATTTGC
706 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
1675646 TGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGAAGCATCACCAGAGAACCTGACCGGCGG
771 TGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGG
* *
1675711 CATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGCCGGGGAGGTGTGCGCACATGGTGTGCGATG
836 CATTGGGGTTCAGACGATC-----GG--GGG-GGCCGGGG-GGTGTGCGCACATGATGTGCGATG
*
1675776 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1675841 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
1675906 CACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGATTTTTTTTGTGCAA
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1675971 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTT
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
1676036 AAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATTGAAAACGAGTTGTCTTGCCA
261 -AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * *
1676101 TGAATCTTCAGGTTAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGTATTGG
325 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
1676166 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGTGCATT
390 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
1676231 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGTTCGTTTCGTCGTTTGGCTTAGGCATACGG
455 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * * * * * * *
1676296 AGTTCAGTCCCAGTCTAAGATCGGATTGGATCGATGGTTGTGGTAGTAGGATTGGCAGCACGTAG
516 AGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAG
* * *
1676361 AGGGGGACCCGATTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCG-CTCGCACG
581 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCT-GCACG
*
1676425 CTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
645 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
1676490 CCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGTCATGTGCTGGT
710 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * *
1676555 GCTGCATTTTTCTTCATCGGGACACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGTATT
775 GCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
* *** * * * *
1676620 GGGGTTTCAG-CGGTAT-TGGGGTTTCAGCGAGTGTGCGCACATGATGTGCGAAG
840 GGGG-TTCAGAC-G-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
1676673 GGTGCTGGTACTTGGCCCTTATATTGGCCCCTTACCCCTCATCAAACCTCGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1676738 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
1676803 CA-TGTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCC
131 CACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
1676867 TGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTT
195 TGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** *
1676932 TAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
260 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1676996 TGAAACTTCACGTGAAGGCTTAAAGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGG
325 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1677061 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
390 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** * *
1677126 CCGTCTCTTTGACTGATGTAGTGCCCGCCCGCCCGCTCGTTT-GCTCAGG-CGGCTTAGGCATAT
455 CCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCTCGTTTCG-TC-GGTTGGCTTAGGCATAC
** * *
1677189 GGAGTTCATTCCCAATCTAAGATCATACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGTGCAC
514 GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA--GCAC
*** * ** *
1677254 --AGAGAAAGACCC-AACTGATCCCTAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGTCC-
577 GTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCT
* ** *
1677315 GCACGTTCGTTTCGTGGGTTGACTGCGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
640 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * ** *
1677380 CATTCCCAGTCTAAGATC-GAATCAGATCGAGGGTTGCGGTAGCACATGCTGGACTCGGGCATGT
705 CATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* ** * * *
1677444 GCTGGTGCAACATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCATCGGAGAACCTGACCGGC
769 GCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * *
1677509 GGCATTGGGGTTCCA-ACAATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATG
834 GGCATTGGGGTT-CAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
1677567 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-CCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
1677631 CTTAAAGGGCATTTGGGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGAGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1677696 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAA
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
1677761 GCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
1677825 AAAAAAATCTCGAACCGTAAAAGGTTTCGAAAATCATGAAAAA-A-AAAACGAGCCGTCTTGCCA
261 -AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
1677888 TGAAACTTCACGTTAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGTATTGG
325 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
1677953 CACGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATT
390 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
1678018 CCGTCTCTCTGGCCGACTTAGTGCCCGCCCACTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
455 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * *
1678083 CATTCCCTGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
520 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGG
* * * ** * * * * * ** *
1678148 GGACTCGACCAATCCTTGGCTTGCGCATCCTGCCCTTCTGGCTGACAGAGCGCCTGCACATTCAT
585 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGT
* * * * *
1678213 TTCGTGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAAT
650 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
1678278 CTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTAGG-TTGGGCATGTGCTGGTGCCAA
715 CTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* * *
1678342 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGACATTAGGGT
780 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
1678407 TCAGGCGATCGGGGGGGCCGGGGGGTATGCGTACATGATGTGCGATG
845 TCAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
1678454 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
1678519 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCACTAGCCATTAAAGTGTCTGAAATTGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1678584 TACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
1678649 GCGAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTA
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** *
1678714 AAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
261 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
1678779 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTTTGAATTTAGAAGCCATAAAAATGGCATTGGC
326 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * *
1678844 ATGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCATCT
391 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** *
1678909 CGTCTCTCTGACTAGCAAAATGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGC
456 CGTCTCTCTG----GC----CG-GCG-TAG-T-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
1678974 CATAC-GAGTTCATTCCCAGTCTAAGATCTGATCGGATCGAGGGTTGCGGTAGTAGGATTGGTAG
509 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
* * * ** * *
1679038 CACGTAGAAGGGGACCCGGTTGATCCCCGGCTTATGCATCTC-ACCCTCTGGCCGGCTGAGCG-C
574 CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
1679101 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGCATACGGAG
639 T-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1679166 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAACTAGACCGAGGGTT-C
703 TTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CG-----GACCGAGGGTTGC
** * * * * *
1679230 TGGTAACACATGCTGGGTTCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-
742 -GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT
* * * * * * *
1679294 CTAGAACATCATCGGAGAACCTGACCGACGGCATTGGGGTTTAGACGATCGTGGGGGTCGGGGGG
806 C-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCAGACGATCGGGGGGGCCGGGGGG
*
1679359 TGTGCGCACATGATGTGTGATG
870 TGTGCGCACATGATGTGCGATG
*
1679381 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
1679446 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
**
1679511 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1679576 GCCAAGAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTTC-AAAAAATTTT
196 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * *
1679640 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAGATAGGAAACGAGTCGTCTTGCCAT
261 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
1679705 GAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGC
326 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
1679770 ATGCAGAAATATGAAGATGCACCTAAA-CCACCTACCACCATATCGATCCATGGCTTGCGCATCC
391 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
1679834 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCTGCTCGTTTCGTCGGTTGGCTTAGG
456 CGTCTCTCTGGCCGGCGTAGT--------GCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGG
* * * *
1679899 CATACGGAGTTCATTCCCAATCTAAGATCGGACC-GACCGAGGGCTGCGGTAGTAGGATTGGTAG
509 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
* * * * ** * * * **
1679963 CATGCAAAGGGGGACCCGACCGATCCTAGGCTTGCTCATTCTGCCCCTCTGGTAGGCTGAGCGCC
574 CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * ** * *
1680028 CGTACGCTTGTTTTATGGGTTGACTTAGGCATACAGAGTTCACTCCCAG--T---C-TAC---G-
639 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
1680083 --A-T--C-G----A-ACCAGACC--A---A-GATTGC-AGCAGCACATGCTAGGCTCGGGCATG
704 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATG
** * * ** ** * * *
1680130 TGCTGGTGTGACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCGAAGAACCTGATCGA
768 TGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* * * *
1680195 CGGCATTAGGGTTCCAG-TGATCGGGGCGGCCAGGGGGGGTGTGCGCACATGATGTACGATG
833 CGGCATTGGGGTT-CAGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
1680256 GGTACTGGTACATT-GCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGATCTCACACAC
1 GGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
1680320 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGG
65 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
1680385 ACACTTTTTTCAAATGG
130 ACACTTTTTTCAAATGG
1680402 CCGGCTGAGT
Statistics
Matches: 5516, Mismatches: 711, Indels: 372
0.84 0.11 0.06
Matches are distributed among these distances:
861 126 0.02
862 2 0.00
863 1 0.00
864 3 0.00
865 149 0.03
867 166 0.03
868 233 0.04
869 62 0.01
871 1 0.00
872 1 0.00
873 98 0.02
874 5 0.00
875 162 0.03
876 3 0.00
877 3 0.00
880 2 0.00
881 2 0.00
884 3 0.00
885 1 0.00
886 7 0.00
887 175 0.03
888 389 0.07
889 62 0.01
890 147 0.03
892 218 0.04
893 147 0.03
894 259 0.05
895 468 0.08
896 27 0.00
897 271 0.05
898 5 0.00
899 17 0.00
900 211 0.04
901 89 0.02
902 40 0.01
903 52 0.01
904 300 0.05
905 633 0.11
906 50 0.01
907 2 0.00
909 156 0.03
910 4 0.00
911 1 0.00
913 2 0.00
914 2 0.00
915 2 0.00
916 2 0.00
917 2 0.00
920 3 0.00
921 11 0.00
923 1 0.00
924 2 0.00
925 127 0.02
926 263 0.05
927 346 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
CAGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
Found at i:1678947 original size:12 final size:12
Alignment explanation
Indices: 1678930--1678954 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1678920 CTAGCAAAAT
1678930 GCCCGCCCGCTC
1 GCCCGCCCGCTC
1678942 GCCCGCCCGCTC
1 GCCCGCCCGCTC
1678954 G
1 G
1678955 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:1679207 original size:26 final size:26
Alignment explanation
Indices: 1679130--1679208 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
1679120 GTTGACTTAG
*
1679130 GCATACGGAGTTCATTCCCAGTCAAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1679156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1679182 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1679208 G
1 G
1679209 ATCGAACTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1680473 original size:26 final size:26
Alignment explanation
Indices: 1680443--1680495 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1680433 GTTGACTTAG
*
1680443 GCATATAGAGTTCA-TTCTCAGTCTAA
1 GCATACAGAGTTCATTTC-CAGTCTAA
*
1680469 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
1680495 G
1 G
1680496 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:1681369 original size:26 final size:26
Alignment explanation
Indices: 1681332--1681384 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1681322 GTTGACTTAG
*
1681332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1681358 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1681384 G
1 G
1681385 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1682339 original size:159 final size:159
Alignment explanation
Indices: 1682053--1682417 Score: 559
Period size: 159 Copynumber: 2.3 Consensus size: 159
1682043 CCCGCCCGGA
* * * ** * *
1682053 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCTAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * *
1682118 TTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCTCGTCTTGCGTATCCCGC
66 TTGCAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCAC
1682183 CCCTCTGGCCGACTGAGCGCCCGCACGCT
131 CCCTCTGGCCGACTGAGCGCCCGCACGCT
* *
1682212 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
*
1682277 TTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCAC
66 TTGCAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCAC
* *
1682342 CCCTCTGGCCGGCTGAGCGCCCGTACGCT
131 CCCTCTGGCCGACTGAGCGCCCGCACGCT
*
1682371 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1682418 CATACGGAGT
Statistics
Matches: 185, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
159 185 1.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGCAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCAC
CCCTCTGGCCGACTGAGCGCCCGCACGCT
Found at i:1682442 original size:25 final size:26
Alignment explanation
Indices: 1682391--1682442 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1682381 GTTGACTTAG
1682391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1682417 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1682442 G
1 G
1682443 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1684172 original size:26 final size:26
Alignment explanation
Indices: 1684142--1684194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1684132 GTTGACTTAG
1684142 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1684168 GCATACGAAGTTGATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1684194 G
1 G
1684195 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1685074 original size:26 final size:26
Alignment explanation
Indices: 1685044--1685096 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1685034 CTTGACTTAG
1685044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1685070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1685096 G
1 G
1685097 ATCAGAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1685622 original size:896 final size:897
Alignment explanation
Indices: 1683281--1686261 Score: 4162
Period size: 896 Copynumber: 3.3 Consensus size: 897
1683271 GTTGAATTAG
* * *
1683281 GCATACGGAGTTCATTCCCAATCTAACATC-GAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAA-CGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
1683345 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGG-G-------G-C--ACCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
1683399 AAACTGA-TCGGAGGCATTAGGGTTCCAGTGATCGA-GGGGGCCGGGGGGTGTGCGCTCATGATG
130 AACCTGACT-GGCGGCATTAGGGTT--A-CGATCGATCGGGG--GGGCGGTGTGCGCACATGATG
* * *
1683462 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * * *
1683527 ACACCCTGTTAAAGAGCATTTGACATTTTACAGGGTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1683592 ATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
1683657 TGTGCATGCCAACAAAAATACAAGGATTATGTCTACGAAGCTTGGGGCCAAAACTCCTTCCAAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
* * * ** * * * *
1683722 ATATTTTAAAAAATCCCAAACCG-TAAAAGTTTTGAAAATTAGGAAAAATAGAAAATGAGCCGTC
449 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
1683786 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAGGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1683851 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTG
579 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1683916 CGCATCCCATCTCTCTGGCCGGAGTAGTG-CC-T-GCCCACTCGCCCGCTCGTTTCGTCGGTTGG
644 CGCATCCCATCTCTCTGG-CGGCGTAGTGCCCGTCGCCCGCCCGCCTGTTCGTTTCGTCGGTTGG
* * * ** *
1683978 CTTAGGCATACAGAATGCATTCCCAGTCTAAGATTAGACTGGACCGTGGGTTGCAGTAGCAAGAT
708 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGAT
* * * * * * * * *
1684043 CGGTAGCACGTAGAGGGGGACCCGGCTGATCCCCGACTTATGCATCCCACCCCTCTAGCCGGCTA
773 CGGCAGCACGCATAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTG
* *
1684108 AACGCCCGCATGCTCG-TTCAATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * * *
1684168 GCATACGAAGTTGATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTTCGGTAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1684233 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGTACCATCGCTGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
1684298 ACCTGACCGGCGGCATTGGGGTTCCG-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACTGGCGGCATTAGGGTTACGATCGATCGGGGGGG-C----GGTGTGCGCACATGATGTG
* * *
1684362 CAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1684427 ACCCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAA
256 ACCC-CCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1684492 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
*
1684557 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CAAA
* * *
1684621 AAAATTTTAAAAAATCCCGAACCTCAAGAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1684686 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1684751 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTT
578 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1684816 GTGCATCCCATCTTTCTGGTCGGCGTAGTGCCCGTTCGCCCGCCCGCCTGTTCGTTTCGTCGGTT
643 GCGCATCCCATCTCTCTGG-CGGCGTAGTGCCCG-TCGCCCGCCCGCCTGTTCGTTTCGTCGGTT
1684881 GGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAG
706 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAG
* * * **
1684945 ATCGGCAGCACACATA-GGGGTCCCAGCCGATCCCCAACTTACGCATCCCGTACC-CTGGCCGGC
771 ATCGGCAGCACGCATAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGC
* *
1685008 TGAGCGCCCGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
1685070 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
1685135 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGTCGGATA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCGTCGGAGA
*
1685200 ACCTGACTGGCGGGCATTAGGGTTACGA-CGATCGGGGGGGCGGTGTGCACACATGATGTGCGAT
131 ACCTGACTGGC-GGCATTAGGGTTACGATCGATCGGGGGGGCGGTGTGCGCACATGATGTGCGAT
* * * *
1685264 GGGTGGTGGTACTTGGCCCTTATATTTGCCCCTTATCCGTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
1685329 CTTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
1685394 ACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
1685459 TACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTT
* *
1685524 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
1685589 TGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
1685654 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
585 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
1685719 CCGTCTCTCTGGCTGGCGTAGTACCCGCTCGCCCGTCCCGCCTGTTCGTTTCGTCAGTTGGCCTA
650 CCATCTCTCTGGC-GGCGTAGTGCCCG-TCGCCCG-CCCGCCTGTTCGTTTCGTCGGTTGGCTTA
* * * * * *
1685784 GGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGC-GACAACAAGATCGA
712 GGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAG-TAGCAAGATCGG
* *
1685848 CAGCACGCATAGGGGGACCCAGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
776 CAGCACGCATAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
*
1685913 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
1685970 GCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTAG-GGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTT-GCGGCAGCACATGCTGG
** **
1686034 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCACCATCATCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCGTCGGAG
* *
1686099 AACCTGACTGGCGGCATTGGGGTTACGGCAATCGAGGAGGTCGGGGGGGTGGTGTGCGCACATGA
130 AACCTGACTGGCGGCATTAGGGTTAC-G--ATC---GA--TCGGGGGGGCGGTGTGCGCACATGA
1686164 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
187 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
1686229 TCAAACCCCCTTAAAGAGCATTTGAGATTCTAC
252 TCACACCCCCTTAAAGAGCATTTGAGATTCTAC
1686262 GGAGTTCATT
Statistics
Matches: 1858, Mismatches: 189, Indels: 73
0.88 0.09 0.03
Matches are distributed among these distances:
887 85 0.05
888 3 0.00
893 3 0.00
894 3 0.00
895 7 0.00
896 283 0.15
897 149 0.08
898 251 0.14
899 155 0.08
900 280 0.15
901 182 0.10
902 186 0.10
903 59 0.03
904 58 0.03
905 37 0.02
906 2 0.00
908 115 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACTGGCGGCATTAGGGTTACGATCGATCGGGGGGGCGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CATCTCTCTGGCGGCGTAGTGCCCGTCGCCCGCCCGCCTGTTCGTTTCGTCGGTTGGCTTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGCAAGATCGGCAGCA
CGCATAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:1685974 original size:26 final size:26
Alignment explanation
Indices: 1685944--1685996 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1685934 GTTGACTTAG
1685944 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACGGAA-TTCATTCCCAGTCTAA
1685970 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1685996 G
1 G
1685997 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1686443 original size:26 final size:26
Alignment explanation
Indices: 1686413--1686517 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
1686403 CTTGACTTAG
*
1686413 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1686439 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1686465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1686491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1686517 G
1 G
1686518 ATCAGAATGG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1686614 original size:11 final size:11
Alignment explanation
Indices: 1686598--1686627 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
1686588 GTCGGAGCAC
1686598 CATCGTCGGAG
1 CATCGTCGGAG
1686609 CATCGTCGGAG
1 CATCGTCGGAG
1686620 CATCGTCG
1 CATCGTCG
1686628 AATAACCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:1687405 original size:26 final size:26
Alignment explanation
Indices: 1687375--1687427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1687365 GTTGACTTAG
*
1687375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
1687401 GCATATAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
1687427 G
1 G
1687428 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:1689175 original size:26 final size:26
Alignment explanation
Indices: 1689139--1689188 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1689129 GACTTAGGCT
*
1689139 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGACTAAGCA
*
1689165 TACGGAGTTCATTCCCAGACTAAG
1 TACGAAGTTCATTCCCAGACTAAG
1689189 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGACTAAGCA
Found at i:1692705 original size:25 final size:26
Alignment explanation
Indices: 1692671--1692722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1692661 GTTGACTTAG
1692671 GCATACGGAG-TCATTGCC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
1692696 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1692722 G
1 G
1692723 ATCGGAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1694462 original size:26 final size:26
Alignment explanation
Indices: 1694422--1694472 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1694412 TGACTTAGGT
* *
1694422 ATACGGAGTTAATTCCCAGTCTAAGC
1 ATACAGAGTTAATTCCCAATCTAAGC
*
1694448 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTAATTCCCAATCTAAG
1694473 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTAATTCCCAATCTAAGC
Found at i:1695317 original size:26 final size:26
Alignment explanation
Indices: 1695281--1695333 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1695271 GTTGACTTAG
1695281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1695307 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1695333 G
1 G
1695334 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1696804 original size:710 final size:705
Alignment explanation
Indices: 1695313--1697187 Score: 3121
Period size: 708 Copynumber: 2.6 Consensus size: 705
1695303 CTAAGCATAT
* *
1695313 GGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAG-GGGTTGCGGCAGCACATGCTGGGCTCGG
* *
1695377 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATAGCCAGAGAACCTG
65 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCTGGAGCATAGCCGGAGAACCTG
* *
1695442 ACCGGCGGCATTGGGGTTCTGGC-ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
129 ACCGGCGGCATTGGGGTTCTAGCGATCGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGG
* * *
1695506 GTGCTGGCACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACATCAACAACTCACACCCCC
192 GTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
*
1695571 TTAAGGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
1695636 ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTCAGCTGAATTTTTTTATGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTATGCATG
1695701 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTA
387 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
1695766 AAAAATCCCAAACCGAAAAAAGTTTCGAAAATCGTTAAAATAGAAAACGAGTCGTCTTGCCATGA
451 AAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGTAAAAATAGAAAACGAGCCATCTTGCCATGA
*
1695831 AACTTCACGTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAT
516 AACTTCACATGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAT
1695896 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
581 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
1695961 TCTCTTTTGCCGGCGTAGTGCCCACCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCGTAC
646 TCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCGTAC
* *
1696021 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGG
1696086 CATGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACCATCG-TCGGAGCATAGCCGGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGCT-GGAGCATAGCCGGAGAACCTG
* * *
1696150 ACCTGCGGCATTGGTGTTCTAGCGATCGGGGGGCCGGGGGTTGTGCGCACATGATGTACGATGGG
129 ACCGGCGGCATTGGGGTTCTAGCGATCGGGGGGCCGGGGG-TGTGCGCACATGATGTGCGATGGG
*
1696215 TGTTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
193 TGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
1696280 TAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
1696345 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTATGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTATGCATGC
*
1696410 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACCCCTTCCGAAAAAATTTTA
388 C-AAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
1696475 AAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCATCTTGCCATG
451 AAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGT-AAAAATAGAAAACGAGCCATCTTGCCATG
* *
1696540 AAACTTCACATGAAGGCTTAAGGGACGGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
515 AAACTTCACATGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCATTGGCA
*
1696605 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
580 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
1696670 GTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCTCGA-TTCGTTGGTTGGCTTAGGCGTAC
645 GTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCTC-ATTTCGTTGGTTGGCTTAGGCGTAC
*
1696731 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAGGGGTTGCGACAGCACATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
1696796 CATGTGCTGGCGACGCATTTTTCTTCGCCAGGGCACCATCGCTAGAGCATAACCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCTGGAGCATAGCCGGAGAACCTGA
* * * * *
1696861 CCGGCGGCATTGGGGTTCTACCGATCAGGGGGTCGGGGGTGTGCGCACTTGATATGCGATGGGTG
130 CCGGCGGCATTGGGGTTCTAGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
1696926 CTAGCACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
195 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * *
1696991 AAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGGAAA-GGGGACAC
260 AAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACAC
*
1697055 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTGTTTTATGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTATGCATGCC
* * *
1697120 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCTAAAACTCCTTCCGCAAAAAGTTTTAA
389 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCG-AAAAAATTTTAA
1697185 AAA
452 AAA
1697188 TCGTGCAAAA
Statistics
Matches: 1096, Mismatches: 57, Indels: 27
0.93 0.05 0.02
Matches are distributed among these distances:
707 10 0.01
708 393 0.36
709 322 0.29
710 368 0.34
711 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (705 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCTGGAGCATAGCCGGAGAACCTGAC
CGGCGGCATTGGGGTTCTAGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTATGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCAAACCGAAAAAAGTTTCAAAAATCGTAAAAATAGAAAACGAGCCATCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
TTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTTCGTTGGTTGGCTTAGGCGTAC
Found at i:1698871 original size:26 final size:25
Alignment explanation
Indices: 1698831--1698882 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
1698821 GATGACTTAG
1698831 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATT-CCAGTCTAA
* * *
1698857 GCATACGGAGTTCATTGCAGTCTAA
1 GCATACAGAGCTCATTCCAGTCTAA
1698882 G
1 G
1698883 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACAGAGCTCATTCCAGTCTAA
Found at i:1700663 original size:26 final size:26
Alignment explanation
Indices: 1700626--1700678 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1700616 GTTGACTTAG
*
1700626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1700652 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1700678 G
1 G
1700679 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1701437 original size:894 final size:893
Alignment explanation
Indices: 1698279--1708815 Score: 6204
Period size: 893 Copynumber: 11.5 Consensus size: 893
1698269 NNNNNNNNNN
* *
1698279 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
1698344 TGCATGCCAACAAAAATACAAGGATGACATCTTCCAAGTTTTGGACCAAAACTCCTTCCAAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
** ** * * *
1698409 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* * **
1698474 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCA
196 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
* * * *
1698539 TTGGCATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
261 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * * *
1698604 CATCCCGTCTGTCTGGCCGACGTAGTGCCCGCCCGCTCG-CCTGCCCGTTCGTTTCGTCGGTTGG
326 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCC-GCCCGCTCGTTTCATCGGTTGG
* * * ** * *** *
1698668 CTTAGGCATTCGGAGTTCATTACCAATCTAAGATTGGACCAAACTGAGGGTTGCAATAGCAAGAT
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGAT
* * *** *
1698733 CGCCAGCACGTAGAGGGGGACCCGGCCGATCCCGGCTTGTGCATCCCGCCCCTCTGACCGGCTGA
455 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCGGCTTACACATCCCGCCCCTCTGGCCGGCTGA
* * * * *
1698798 GCGCCCGTACGCTCGTTTCGTTGGATGACTTAGGCATACAGAGCTCATTCCCAGTCTAAGCATAC
520 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *
1698863 GGAGTTCATT-GCAGTCTAAGATCGGA-TCAGACCGAGGGTTGC-GACAGCACATGCTGGGCTCG
585 GAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCA
* * *
1698925 GGCATGTGCTGGTGTCGTATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCATCGGAGAACC
648 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCACCA-CATC---G-----TCGGAGAACC
* ** * * * * *
1698989 TGACCGGTGGCATTGAGGTTCCGGTGATCGGGGGGCCTGGGGTGTGTGCGCACATGTTGTGTGAT
704 TGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGCC-GGGGGGTGTGCACACATGATGTGCGAT
* *
1699054 GGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
768 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCA
* *
1699119 CCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
833 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
1699180 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCCAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1699245 TGCATGCCAACAACAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
*
1699310 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTT
131 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
**
1699375 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAATTTGGCA
196 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
*
1699440 TTGGCA--CATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCATGGCTTG
261 TTGGCATGCA-A-AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * *
1699503 CGTATCCCGTCTCTCAT-GTCGGCGTAGTGCCCACCCGCCCGCCCGTCCGCTCATTTCATCGGTT
324 CGCATCCCGTCTCTC-TGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTT
* **
1699567 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATTGTTGCTGCAGCAGG
388 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGG
* * * *
1699632 ATCGGCAGCATGCAGAAGGGGACCCGGCCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGC
453 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTACACATCCCGCCCCTCTGGCCGGC
*
1699697 TGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
517 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
1699762 TACAAAATTCATTCCCAGTCTAAGATCGAACTTGG-CCGAGGGCTGCAGCAGCACATGCTGGGCT
582 TACGAAGTTCATTCCCAGTCTAAGATCGGAC-TGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * * *
1699826 CGGGCATGTGCTAGTGCCGTATTTTTCTTCA-CTGGGGCA-C-CATCGTCGGAGAACCTGATCGG
646 CAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCACCACATCGTCGGAGAACCTGACCGG
1699888 TGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGCTGTGCACACATGATGTGCGATGGGTGC
711 TGGCATTGGGGTTCCGACGATCGA-GGGGCCGGGGGG-TGTGCACACATGATGTGCGATGGGTGC
* *
1699953 AGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCACCTTAA
774 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAA
*** *
1700018 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAATTATTAAAGTGTCTGGAAT
839 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
1700073 GGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
1700138 TGCATGCCAACAGCAATACAAGGATCACTTTTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
*
1700203 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTT
131 ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* **
1700268 GCTATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAATTTGGCA
196 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
** *
1700333 TTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCG
261 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * *
1700398 CATCCCGTCTCTCAGGTCGTCGTAGTGCCCACCCGCCCGTCCGCCCGCTTGTTTCATCGGTTGGC
326 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGC
* * **
1700463 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGATTGTTGCTGCAGCAGGATC
391 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATC
* * *
1700528 GGCAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTATACATCCCGCCCCTCTGGCCGGCTGA
456 GGCAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTACACATCCCGCCCCTCTGGCCGGCTGA
1700593 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
520 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
1700658 GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG
585 GAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGG
*
1700723 CATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCA-C-CATCGTCGGAGAACCTGATCGGTGGC
650 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCACCACATCGTCGGAGAACCTGACCGGTGGC
* **
1700785 ATTGGGGTTCCGGCGATCGAGGGGCCGGGGGGGCTGTGTGCACATGATGTGCGATGGGTG-TAGG
715 ATTGGGGTTCCGACGATCGAGGGGCC-GGGGGG-TGTGCACACATGATGTGCGATGGGTGCT-GG
*
1700849 TACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGA
777 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGA
* ** *
1700914 GCATTTGAGATTTTATAGGTTTGCTAACCAGTAGTTATTAAAGTGTCTGGAAT
842 GCATTTGAGATTTTACAGGTTTGCT-ACCAGTAGCCATTAAAGTGTCTGAAAT
*
1700967 GGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1701032 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACC-AAAAA
* ** ** *
1701097 -ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
130 TATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * * *
1701161 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCACAAAAATGGC
195 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
* * * *
1701226 ATTGGCATGCAAAAATATGAACATGTGCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTAC
260 ATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * * *
1701291 GCATCCCGTCACTCTGGCC-AGGGTAGTGCCCGCCCGTCCGTCCGCCAGCTCGTTTTATCGGTAG
325 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
* * * *
1701355 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGC-GATAGTAG
389 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCTG-CAGCAG
* ** * * ** * *
1701418 GATCGGCAGCACACAGAGGGGGACCCGATCGATCACCGACTTGCACATCCAACCCCTCTGGTCGA
452 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATC-CCGGCTTACACATCCCGCCCCTCTGGCCGG
* *
1701483 CTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
516 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
1701548 ATACGGAGTTCATTCCAAGTATAAGACCGGACCGGATCGAGGGTTGCAGCAGCACATGCTAGGCT
581 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * **
1701613 AAGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCGCCATCGCCAGAGCATCGTCGGAGAAC
646 CAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG-G-CA---CC--A-CATCGTCGGAGAAC
** * * *
1701678 CTGACCGACGGCATTGGGGTTCCAACGATTTG-GAGGGTCGGGGGGTGTGCACACATGATGTGCG
703 CTGACCGGTGGCATTGGGGTTCCGACGA-TCGAG-GGGCCGGGGGGTGTGCACACATGATGTGCG
* * *
1701742 ATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCGCAC
766 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1701807 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
831 CACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
1701870 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAGTTTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * ** ** ***** * *
1701935 -AGCATGCCAACAAAAATACAAGGAGTTCA-TTCCTAGTCTAAGCATACGGAGTTCATTCCTAGT
65 GTGCATGCCAACAAAAATACAAGGA--TCACGT-CTA--CCAAGTTTGGGGCCAAAACTCCTA-C
* * ** ** ** * * * *** ** * ** *
1701998 CTAAGATCAGATT---GGAT--CG-AGGGTTACGACAGCA-CATGCAGGGCTCGAGCATGTACTG
124 CAAAAAT-ATTTTAAAAAATCCCGAACCG-TA-AAAAGGATCAAAAATCG-T-GA-AAAATA--A
**** * ** * * * * * * * *
1702056 GTGTCGCATTTTTCTTCACCAGGGCACAATCGCTGGAGCATCGCCGGAGAAACTGATCGGCG-GC
181 AAAACG-AGTCGTCTT-GCCA-TG-A-AA---CT---TCA-CG--TGA-AAGCTTA-AGG-GACC
** * * **** * ** ** ** * * *
1702120 ATTG---GGGTTC-C-GGCGACT--GGGGGGGAGAGGTGTGCGCACATGATGTACGATGGGTGCT
229 ATTGTATGAATTCACAAGCCA-TAAAAATGGCATTGGCATGCAAAAAT-ATG-AAGAT--GTAC-
*** ** * ** *** * * * **
1702178 GGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGT-TA
288 ----CTAAACCC--A-CCT-ACCACCCTATCGATC--CATGGCTTGCGCA-TC-C-CGTC-TCT-
** ** *** ** *** * * * ** *** *
1702241 AAGAG-C-ATTTGAGAT-TTTACAGGTTTG-CTGCCAG-TAGCTATT-AAAGTGTCTGAAATGGG
338 CTG-GCCGACGT-AG-TGCCCACCCGCCCGTCCGCCCGCTCG-T-TTCATCG-GT-TGGCTTAGG
* * **** * * ** *** **
1702300 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAAGTTTTTTTGT
396 CATACGGAGTTC--AT--TC-C-CAGTC---TA-AGATC-AG--ACCAGACTG-AG---GGTTG-
* * ** * * ** * ******
1702364 ATGCCAACAAAAATACAAGG-ATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
443 CTG-CAGC-AGGAT-C--GGCAGCACG----CAGAG---GGGG-----AC-CCGGCCGATCCCGG
* * * * * * ** ** * ** **** *
1702428 TTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAATAGAAAACAAG-TCGTTTTGC
490 CTT-ACACATCCCG-CCCCT---CTG-GCCG----GC-TG---AGCGCCCGCACGCTCG-TTT--
* ** * * * * ** ** * **
1702492 CATGAAACTTCACATGAAGGCTTAAGG-GACCATT-GTATGACTTTACAAGCCATAAAAATGGCA
538 CGTG--GGTTGAC-T-TAGGCATACGGAGTTCATTCCCA-G--TCT--AAG-CATACGAA--G--
*** * * ** * ** * ** ** *
1702555 TTGGCATGTAGAAATATGAAGATATGCCTAAACCCA-CCTACCACCCTATCGATCCACA-GCTTG
589 TT--CAT-TCCCAGTCT-AAGATCGGACTGGACCGAGGGTTGCA-GC-A--G---CACATGC-TG
* * * * * * ***** ** * *** *
1702618 CGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGC-CCGCCCGCCCGCTCGCCCGC-CCATTCGTT
642 GGC-T-CAG--GC-AT-G-TG-C-TGGTG-CCGCATTTTTC-TTC-ATCGGGGGCACCA--C--A
* * * * * *** * * * ** *
1702681 TCGTCGGTTCGCTTAGGCAT-ACTGAGT-TCATTCCCAG--CCTAAGATCAGACCGCACCGAGGG
691 TCGTCGG--AG---A-ACCTGACCG-GTGGCATT-GGGGTTCCGACGATC-GA-GGGGCCGGGGG
* * * * * * ** * ** * **
1702742 TTGTGGTA-GCAGGATTGGTAGCACGCAGAGGGGGACCCG-ACCGATCCCCGGCTTGTGCATCCC
746 GTGT-GCACACATGA-T-GT-G--CG-A-TGGGTG-CTGGTA-C-TTGGCC--CTTAT--AT-TG
** * ** ** * * * ** ****** **
1702805 GCCCCTCTGGCCGGTTGAGCGCCCGCACATTGGGTTCGTGGGTTGA-CTT--AG-GCATACG-GA
795 GCCCC-CTATCC--CT---C-ATCAAACCTCGAGAAC-TCACACCACCTTAAAGAGCATTTGAGA
* * * * **
1702865 GTTCATTGCCA-GTCTAAGC-ATCCTG-AGTTCATTCCCA--GTCT-AAGAT
852 -TT--TT-ACAGGT-T-TGCTA-CCAGTAG-CCATT-AAAGTGTCTGAA-AT
* * *** * * * *** * ** * * ** *
1702911 ---CAGAC--TGGACAGAGGGTTACGGCAGCACATGCTGGAC-TCGGGCATGTGCT-GGTGCCAT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATAC---ACTTCGAG--T-TTTTAGCTG--A-
*** ** * * *** * * * ** *
1702969 ATTTTTCTTCACCGGGGC-ACCATCGT-CGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGG
57 ATTTTT-TTGTGCATGCCAACAAAAATAC-AAGGATCA-C---G--TCT-ACC--AAG-TTTGGG
** * * * ** *** ** *
1703032 GTTCCGGCGATCGGGGCCGGGGGGGTGCACACATGATGCGCGATGGGTATTGGCACTTGGCCCTT
110 G--CC--AAAAC---TCC-------TAC-CA-AAAAT-----AT---T-TTAAAAAAT--CCC-G
****** ** * * *
1703097 ATATTGGCCCCGTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATT
147 A-A------CCGTAAAAAGGATCAAAAATCGTGAA---A-A-----ATAAA-A--A-ACGAG---
* * * * * * *
1703162 TTACAGGTTTGCTGCCA-GTAGC--CA--TTAAAGTGTCTGAAATGGGGA-CACTTTTTTCGAAT
189 -T-C--GTCT--TGCCATGAAACTTCACGTGAAA--G-CT-TAA--GGGACCA-TTGTAT-GAAT
* ** *** ** * **** * * * *
1703221 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGC-TG-ATTTTTTTTG-TGCATGCCAACAAAAA
240 --TCAC--AAGC-CATA-AAAATG-G-CATTGGCATGCA-AAAATATGAAG-ATG--TAC----C
** * * * ** *** * ***** * *
1703283 TACAAGGATCACGTCTACCA-CGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCTT
289 TA-AA--CCCAC--CTACCACCCTATCGATCCATGGCT--TGCGC-ATCCCGTCT-----CTC-T
* ** * ** ** **** * ** * *
1703346 GAACC-ACAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCAT-GAAACTT
340 G-GCCGAC--GTAG-TGC--CCA-CCCG-CCCGTCCG--CCCG-CTCGT-TT--CATCG---GTT
** * * * * ** * *** *
1703408 CACGTGAAGGCTTAACGGA--CCATT----GTATGAATTTACA-AGCCATAAAAATGGCATTGGC
388 GGC-T-TAGGCAT-ACGGAGTTCATTCCCAGTCT-AAGAT-CAGA-CCAGACTGA-GG-GTT-GC
* * * * ****** *** * *
1703466 ATGTAGAAATATGAAGAT-GTGCCTA-AACCCA-CCTACCA-CCTATCGATCCACGGCTTGCGCA
444 -TGCAG---CA-G--GATCG-G-C-AGCACGCAGAGGGGGACCCGGCCGATCC-CGGCTTACACA
* * * ** * * * *** * *
1703527 TCCTGTCTCTCTAACCGACATAGTGCCTGCCCGCCCGC-CCACTCGT---TTCA-TCA-G--TA-
498 TCCCGCCCCTCTGGCCGGC-T-GAG-C-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
1703583 -G-G--C-TT---AG----A-CATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCAAGG
559 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGG
* * *
1703634 GTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGGG---
623 GTTGCAGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCAC
* * ** * * * *
1703694 --CATCATAGGAGAACCTGACCGGCAGCATTAGGGTTTCGACGATCGAGCTGGCTGGGGGGTGTG
687 CACATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAG-GGGCCGGGGGGTGTG
* * * *
1703757 CGCACATGATGTGTGATGGGTGCTGGAACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
751 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * **
1703822 CTCAAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
816 CTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
* *
1703887 AAGTGTCTTATAT
881 AAGTGTCTGAAAT
* *
1703900 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
1703965 TGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGTCCAAAACACCTTCCAAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
** * * * * *
1704030 ATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAGAAATCATGCAAAATAGAAAACAAGTCGTCT
131 A-TTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
1704095 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
195 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
* * * *
1704160 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
260 ATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * *
1704225 GCATCCCGTCTCTCTGGCC-AGGGTAGT--------G--C--CCGCCCACTCATTTCGTCGTTTG
325 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
* *
1704277 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTA-CAGG
389 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGC-AGCAGG
* * * * *
1704341 ATCGGCAGCACGCAAAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGGC
453 ATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTACACATCCCGCCCCTCTGGCCGGC
* * * * *
1704406 TGAGTGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATATGCAGTTCATTCCCAGTCTAAGCA
517 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
1704471 TCCG-AGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTT------GCACATGCTGGG--C
582 TACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTC
* * *
1704527 A-GCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCA-C-CATCGTCGGAGAACCTGA-CGGC
647 AGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCACCACATCGTCGGAGAACCTGACCGGT
* * * * * * *
1704587 GGTATTGAGGTTTCGACGATCGGGGGGACGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
712 GGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
** * * *
1704652 TACTTGGAACTTATATTGGCCCCCTATCCCTCATCCAACCTCTAGAACTCACACCCCCTTAAAGA
777 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGA
* **
1704717 GCATTTGAGATTTTTCAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAAT
842 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
1704769 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1704834 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACC-AAAAA
* * * **
1704899 -ATTTTAAAAAATCCCGAACCAT-AAAAGGTTTCAAAAATCATGAAAAATAGTAAACGAGTCGTC
130 TATTTTAAAAAATCCCGAACCGTAAAAAGG-ATCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
* * *
1704962 TTGCCATAAAACTTCACGTG-AAGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
194 TTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGG
* * * * *
1705026 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTG
259 CATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * *
1705091 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCAGCCCGCTCGTTTCGTCG
324 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG---TCC-GCCCGCTCGTTTCATCG
* * * * *
1705156 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGATGGTTG-TGACTG
385 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTG-CAG
* * ** * * * * *
1705220 CAGGATCGGTAGCACACAGA-GGGGACCCGATCGATCCCCGGCTTGCACAGCGCGCCCCTCTAGT
449 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTACACATCCCGCCCCTCTGGC
* *
1705284 CGACTGAGCGCACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
513 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
1705349 AGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCTA-CAGCACATGTTG
578 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-AGCAGCACATGCTG
* * **
1705413 GGCTC-GCGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGG
642 GGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATC-GGG-GGCA-C--C--A-CATCGTCGG
* * * ** * *
1705477 AGAAGCTGACCAGCGGCATTACGGTTTCGACGATCG-GGGGTCGGGGGGGATGTGCACACATGAT
698 AGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGG-CCGGGGGG-TGTGCACACATGAT
* * * *
1705541 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAGCT
761 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
1705606 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTTTGA
826 CACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
1705671 AAT
891 AAT
* *
1705674 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1705739 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACC-AAAAA
* * * **
1705804 -ATTTTAAAAAATCCCGAACCAT-AAAAGGTTTCAAAAATCATGAAAAATAGTAAACGAGTCGTC
130 TATTTTAAAAAATCCCGAACCGTAAAAAGG-ATCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
* * *
1705867 TTGCCATAAAACTTCACGTG-AAGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
194 TTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGG
* * * *
1705931 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
259 CATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* *
1705996 CGCATTCCGTCTCTCTGGCCGACGTAGTGCCCA------C--CCGCCCGCTTGTTTCATCGGTTG
324 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
* * * * * * * * *
1706053 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAAATCAGACCGATGGTTACGGTAGCCA-G
389 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAG-CAGG
* * * ** * * * *
1706117 ATCGACACCACACAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGC
453 ATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTACACATCCCGCCCCTCTGGCCGGC
* *
1706182 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
517 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
1706247 TATTG-ACTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACA-TAGCACATGCTGGGCT
582 TA-CGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * ** **
1706310 -GGGCCATGTGCTGGTGCTGCATTTTTACTTTGTCGAGGCACCATCGCTGGAGCATCGTCGGAGA
646 CAGG-CATGTGCTGGTGCCGCATTTTT-CTTCATCG-GG-GGCA-C-C---A-CATCGTCGGAGA
* * * * * * *
1706374 ACCTAACCGGCGGCATTGCGGTTCCGACGATCGGGGGGCCGGGGGCGTGTGCGCACATTATTTGC
701 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGG-GTGTGCACACATGATGTGC
*
1706439 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATA
765 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
1706504 CCCCCTTAAATAGCATTTCAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
830 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * * *
1706567 GGGGACTCTTTTTTCAAATCGTCACAAAATCATGTATACTTTGAGTTTTTAGCTGAATGTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1706632 TGCATGCCAACAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAC-CAAAAA
** * *
1706697 -ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
130 TATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
** * *
1706761 TGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
* * * * * *
1706826 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCTTATCGATCCACGGCTTAC
260 ATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * *** *
1706891 TCATCCCGTCTATCTGGCCGGCTTAGTGCCCACCCGCCTACCCGCCCGCTCGTTTCGTCGGTTGG
325 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGG
* * * * * **
1706956 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACTGAGGGTTACGGTAGTTGGA
390 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCTGCAGCAGGA
* * * ** * * * **
1707020 TTGGCAGCACGCCTGAGAGGGACCCGATCGATCCCCGGATTGCGCATCCCGCCCCTCTGGCCGAT
454 TCGGCAGCACG-CAGAGGGGGACCCGGCCGAT-CCCGGCTTACACATCCCGCCCCTCTGGCCGGC
* * * * * *
1707085 TGAGCACCTGTATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
517 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
1707150 T-CTAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
582 TACGA-AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * *
1707214 CAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCACTGGAGCATCATCGGAGAAC
646 CAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG--GCA-C-C---A-CATCGTCGGAGAAC
** ** * * *
1707279 CTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCG
703 CTGACCGGTGGCATTGGGGTTCCGACGATC-GAGGGGCC-GGGGGGTGTGCACACATGATGTGCG
** *
1707344 ATGGGTGCTGGTACTTGGAACTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
766 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1707409 CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
831 CACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1707472 GGGGACACTTTTTTCAAATGGTCACAAAATCGTGTATACTTCGAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
1707537 TGCATCCCAACAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TACCAAAAA
** * * **
1707602 -ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGTAAACGAGTCGTCT
130 TATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
* * *
1707666 TGCCATGAAACTTCACGTG-AAGGTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
** * **
1707730 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
260 ATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * *
1707795 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCCGTCTGCCCGCTCATTTCGA-CGGTTG
325 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTC-ATCGGTTG
* * * * * * * *
1707859 G-TTAGACATATGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACCGAGGGTTGCCGTAGTAGGA
389 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGA
* * * *** * * * *
1707923 TCGGTAGCACACAGAGGGGCACCCATTCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCTGGCT
454 TCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTACACATCCCGCCCCTCTGGCCGGCT
** *
1707988 GAGCGCCCGCACAATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
518 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
1708053 ACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGCTACGGCAGCACATGCTGGGCTCG
583 ACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCA
* * * *** **
1708118 GGCATGTGTTGGTGCCACATTTTTTTTTGCCGAGGCACCATCACAGGCGCATCGTCGGAGAACCT
648 GGCATGTGCTGGTGCCGCATTTTTCTTCATCG-GG-GGCA-C-CA----CATCGTCGGAGAACCT
* * * ** * * *
1708183 GACCGGCGGCATTGGGTTTTCGGTGAT-GGGGGGCCAGGGGGGTGTGCGCACATGATTTGCGAT-
705 GACCGGTGGCATTGGGGTTCCGACGATCGAGGGGCC-GGGGGGTGTGCACACATGATGTGCGATG
* * * *
1708246 GGTGCTGGTACTTGGCCCTTATATTGGTCCCGTATCCCTCATCAAACCTCAAGAACTCACACCCC
769 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCAC
*
1708311 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
834 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1708371 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1708436 TGCATGCCAA-AAAAATACAAGGATCACGTTTACCAAATTTGGGGCCAAAACACCTTCCGAAAAA
66 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACC-AAAAA
** ** * * *
1708500 -ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCT
130 TATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
** * * * *
1708564 TGCCATGAAACTTCACGTGATGGCTTAAGGGACTATTGTATTAATTTACAAGCCATAAAAACGGC
195 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
* * * * *
1708629 ATTGGCACGTAGAAATATGAAGATGTGA-TTAAACCCACCTACCACCCTATCGA-CCAACGGCTT
260 ATTGGCATGCAAAAATATGAAGATGT-ACCTAAACCCACCTACCACCCTATCGATCC-ATGGCTT
* * * * *
1708692 CCGCATCCCGTCTCTCTAGCCTG-CGTAGT----TCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
323 GCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGT
* * * * * * * *
1708752 TGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGAACAAATCGGACAGAGGGTTGCGGCAGCA
387 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCA
1708816 CATGTTGGGC
Statistics
Matches: 7581, Mismatches: 1459, Indels: 1197
0.74 0.14 0.12
Matches are distributed among these distances:
856 9 0.00
857 5 0.00
858 7 0.00
859 6 0.00
860 32 0.00
861 5 0.00
862 2 0.00
864 2 0.00
865 6 0.00
866 8 0.00
867 143 0.02
868 107 0.01
869 268 0.04
870 36 0.00
871 32 0.00
872 2 0.00
873 5 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 35 0.00
878 5 0.00
880 1 0.00
882 104 0.01
883 121 0.02
889 11 0.00
891 2 0.00
892 79 0.01
893 1299 0.17
894 1067 0.14
895 49 0.01
896 47 0.01
897 6 0.00
898 122 0.02
899 309 0.04
900 43 0.01
901 427 0.06
902 420 0.06
903 457 0.06
904 450 0.06
905 780 0.10
906 15 0.00
907 17 0.00
908 1 0.00
909 6 0.00
910 7 0.00
911 8 0.00
912 10 0.00
913 6 0.00
914 4 0.00
915 3 0.00
917 5 0.00
919 15 0.00
920 16 0.00
921 13 0.00
922 8 0.00
923 11 0.00
924 7 0.00
925 8 0.00
926 4 0.00
928 5 0.00
930 4 0.00
931 11 0.00
932 3 0.00
933 7 0.00
934 5 0.00
935 3 0.00
936 13 0.00
937 13 0.00
938 12 0.00
939 1 0.00
940 3 0.00
942 2 0.00
943 14 0.00
944 3 0.00
947 2 0.00
948 3 0.00
949 2 0.00
950 2 0.00
951 7 0.00
953 4 0.00
954 4 0.00
956 3 0.00
957 4 0.00
958 1 0.00
959 4 0.00
960 2 0.00
961 2 0.00
962 2 0.00
963 6 0.00
966 4 0.00
970 2 0.00
971 4 0.00
972 8 0.00
973 5 0.00
975 2 0.00
976 1 0.00
977 8 0.00
978 1 0.00
980 3 0.00
981 3 0.00
982 2 0.00
983 1 0.00
984 2 0.00
985 8 0.00
986 5 0.00
987 18 0.00
988 11 0.00
989 27 0.00
990 17 0.00
991 12 0.00
992 16 0.00
993 3 0.00
994 16 0.00
995 9 0.00
996 5 0.00
997 3 0.00
999 5 0.00
1001 6 0.00
1002 12 0.00
1003 15 0.00
1004 2 0.00
1005 1 0.00
1006 1 0.00
1007 1 0.00
1008 4 0.00
1009 13 0.00
1010 23 0.00
1011 7 0.00
1012 1 0.00
1013 3 0.00
1014 3 0.00
1015 13 0.00
1016 1 0.00
1017 2 0.00
1018 7 0.00
1019 11 0.00
1020 24 0.00
1021 6 0.00
1022 2 0.00
1023 2 0.00
1024 129 0.02
1025 134 0.02
1026 97 0.01
1027 37 0.00
1028 44 0.01
1029 47 0.01
1030 67 0.01
1031 81 0.01
1032 100 0.01
1033 68 0.01
1034 59 0.01
1035 55 0.01
1036 64 0.01
1037 45 0.01
1038 72 0.01
1039 47 0.01
1040 513 0.07
1041 106 0.01
1042 73 0.01
1043 46 0.01
1044 34 0.00
1045 17 0.00
1046 34 0.00
1047 48 0.01
1048 561 0.07
1049 201 0.03
1050 20 0.00
1051 17 0.00
1052 25 0.00
1053 31 0.00
1054 29 0.00
1055 46 0.01
1056 61 0.01
1057 27 0.00
1058 30 0.00
1059 22 0.00
1060 30 0.00
1061 100 0.01
1062 206 0.03
1063 57 0.01
1064 27 0.00
1065 12 0.00
1066 22 0.00
1067 34 0.00
1068 27 0.00
1069 81 0.01
1070 25 0.00
1071 5 0.00
1072 14 0.00
1073 14 0.00
1074 12 0.00
1075 17 0.00
1076 28 0.00
1077 30 0.00
1078 10 0.00
1079 11 0.00
1080 23 0.00
1081 10 0.00
1082 2 0.00
1083 2 0.00
1084 2 0.00
1085 5 0.00
1086 3 0.00
1087 9 0.00
1088 5 0.00
1089 6 0.00
1090 11 0.00
1091 2 0.00
1092 1 0.00
1093 4 0.00
1094 1 0.00
1095 6 0.00
1096 1 0.00
1097 1 0.00
1098 2 0.00
1099 9 0.00
1100 4 0.00
1101 18 0.00
1102 13 0.00
1103 12 0.00
1104 8 0.00
1105 7 0.00
1106 3 0.00
1107 1 0.00
1108 1 0.00
1109 3 0.00
1110 1 0.00
1112 1 0.00
1113 4 0.00
1114 2 0.00
1115 3 0.00
1116 3 0.00
1117 2 0.00
1118 2 0.00
1119 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAT
ATTTTAAAAAATCCCGAACCGTAAAAAGGATCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGGCCGATCCCGGCTTACACATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGGCACCACATCGTCGGAGAACCTGACCGGTGGCA
TTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
Found at i:1701549 original size:26 final size:26
Alignment explanation
Indices: 1701520--1701572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1701510 GTTGACTTAG
* *
1701520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
1701546 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
1701572 G
1 G
1701573 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:1702324 original size:427 final size:428
Alignment explanation
Indices: 1701526--1702384 Score: 1280
Period size: 427 Copynumber: 2.0 Consensus size: 428
1701516 TTAGGCATAC
*
1701526 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGACCGGACCGGATCGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGACCAGACCGGATCGAGGG
* ** *** * * *
1701591 TTGCAGCAGCACATGCTAGGCTAAGGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCGCCAT
66 TTACAGCAGCACATGCTAGGCTAAGGCATGTACTGGTGCCGCATTTTTCTTCACCAGGGCACAAT
* * * *
1701656 CGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATTTGGAGGGTCGGGG
131 CGCCAGAGCATCGCCGGAGAAACTGACCGACGGCATTGGGGTTCCAACGATCTGGAGGG-CGGGA
* *
1701721 GGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCTCTCA
195 GGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
1701786 TCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
1701851 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
1701916 TTTTAGCTAAAGTTTTTTTAGCATGCCAACAAAAATACAA
390 TTTTAGCTAAAGTTTTTTT-GCATGCCAACAAAAATACAA
* * * * **
1701956 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGG
1 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGACCAGACCGGATCGAGGG
* *
1702021 TTAC-GACAGCACATGC-AGGGCT-CGAGCATGTACTGGTGTCGCATTTTTCTTCACCAGGGCAC
66 TTACAG-CAGCACATGCTA-GGCTAAG-GCATGTACTGGTGCCGCATTTTTCTTCACCAGGGCAC
** * * **
1702083 AATCGCTGGAGCATCGCCGGAGAAACTGATCGGCGGCATTGGGGTTCCGGCGA-CTGG-GGG-GG
128 AATCGCCAGAGCATCGCCGGAGAAACTGACCGACGGCATTGGGGTTCCAACGATCTGGAGGGCGG
* *
1702145 AGAGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
193 -GAGGTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCC
*
1702210 TCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
257 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
1702275 TAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
322 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
1702340 AGTTTTTAGCTGAAGTTTTTTTGTATGCCAACAAAAATACAA
387 AGTTTTTAGCTAAAGTTTTTTTGCATGCCAACAAAAATACAA
1702382 GGA
1 GGA
1702385 TCACGTCTAC
Statistics
Matches: 387, Mismatches: 38, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
426 24 0.06
427 206 0.53
428 3 0.01
429 6 0.02
430 148 0.38
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (428 bp):
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGACCAGACCGGATCGAGGG
TTACAGCAGCACATGCTAGGCTAAGGCATGTACTGGTGCCGCATTTTTCTTCACCAGGGCACAAT
CGCCAGAGCATCGCCGGAGAAACTGACCGACGGCATTGGGGTTCCAACGATCTGGAGGGCGGGAG
GTGTGCACACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTAAAGTTTTTTTGCATGCCAACAAAAATACAA
Found at i:1702885 original size:26 final size:26
Alignment explanation
Indices: 1702856--1702908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1702846 GTTGACTTAG
*
1702856 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1702882 GCATCCTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1702908 G
1 G
1702909 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1705360 original size:26 final size:26
Alignment explanation
Indices: 1705324--1705376 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1705314 GTTGACTTAG
1705324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1705350 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1705376 G
1 G
1705377 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1706248 original size:26 final size:26
Alignment explanation
Indices: 1706218--1706270 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1706208 GTTGACTTAG
* *
1706218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
**
1706244 GCATATTGACTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
1706270 G
1 G
1706271 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:1708059 original size:26 final size:26
Alignment explanation
Indices: 1708023--1708075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1708013 GTTGACTTAG
1708023 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1708049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1708075 G
1 G
1708076 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1713890 original size:26 final size:26
Alignment explanation
Indices: 1713850--1713902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1713840 CTTGACTTAG
1713850 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
1713876 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
1713902 G
1 G
1713903 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:1716844 original size:541 final size:539
Alignment explanation
Indices: 1715768--1716846 Score: 1748
Period size: 541 Copynumber: 2.0 Consensus size: 539
1715758 TCGACGATCT
* *
1715768 GGGGGCCGGGGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
1 GGGGGCCGGGGGGTGTACGCACAAGATGTGCGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
* * * * * *
1715833 CTGTCCCTCATCAAACCTCGAGAACTCACACCCGCTTGAAGAGCATTTGAGATTTTACAGGTTTG
66 ATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAAGTTTG
*
1715898 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
131 CTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
1715963 CACTTCCAGTTTTTAGCTGATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAC
196 CACTTCCAGTTTTTAGCTGATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
* * * **
1716028 GTTTGGAGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTCGTACCGCAAAAAGTTTTGAAAA
261 GTTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * *
1716093 TCGTGAAAAATAGAACACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
326 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
1716158 TATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAGTATGAAGATGTGCCTAAACCCAC
391 CATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAGTATGAAGATGTGCCTAAACCCAC
*
1716223 CTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCT
456 CTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCT
*
1716288 CGCCCGCCTACTCGTTTCG
521 CGCCCGCCCACTCGTTTCG
* * *
1716307 GGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGTACGCACAAGATGTGCGATGGGTGCTGGTACTT-GACCTTATATTAGCCC
1716372 CATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAAGTTT
65 CATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAAGTTT
* *
1716437 TCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGT
130 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
1716502 ACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC
195 ACACTTCCAGTTTTTAGCTGA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC
** * *
1716567 AAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTTGAACTGCAAAAAGTTTCAAA
259 AAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAA
1716632 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
324 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
1716697 TGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCC
389 TGCATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAGTATGAAGATGTGCCTAAACCC
* * * *
1716762 ACCTACCACCTTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCAGG-GTAGTGCCCGCCC
454 ACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGG-CAGGCATAGTGCCCGCCC
*
1716826 G-TCCGCCTGCCCACTCGTTTC
518 GCT-CGCCCGCCCACTCGTTTC
1716847 ATTGGTTGGC
Statistics
Matches: 496, Mismatches: 40, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
539 45 0.09
540 156 0.31
541 292 0.59
542 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (539 bp):
GGGGGCCGGGGGGTGTACGCACAAGATGTGCGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
ATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAAGTTTG
CTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCCAGTTTTTAGCTGATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
GTTTGGAGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
CATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAGTATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCAGGCATAGTGCCCGCCCGCT
CGCCCGCCCACTCGTTTCG
Found at i:1717048 original size:26 final size:26
Alignment explanation
Indices: 1717019--1717071 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1717009 GTTGACTTAG
*
1717019 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
** *
1717045 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
1717071 G
1 G
1717072 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:1717946 original size:26 final size:26
Alignment explanation
Indices: 1717917--1717969 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1717907 GTTGACTTAG
* * * *
1717917 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
1717943 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
1717969 G
1 G
1717970 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:1718855 original size:26 final size:26
Alignment explanation
Indices: 1718819--1718871 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1718809 GTTGACTTAG
1718819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1718845 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1718871 G
1 G
1718872 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1720639 original size:30 final size:26
Alignment explanation
Indices: 1720603--1720658 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 26
1720593 GGTGACTTAT
1720603 GCATACGGATGTTCCATTCCCAGTCCTAAG
1 GCATACGGA-GTT-CA-TCCCAGT-CTAAG
1720633 GCATACGGAGTTCATCCCAGTCTAAG
1 GCATACGGAGTTCATCCCAGTCTAAG
1720659 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 7 0.27
28 2 0.08
29 3 0.12
30 9 0.35
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGTCTAAG
Found at i:1722411 original size:26 final size:26
Alignment explanation
Indices: 1722374--1722424 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1722364 TTTGACTTAG
*
1722374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1722400 GCATACGAAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1722425 TGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1723311 original size:26 final size:26
Alignment explanation
Indices: 1723273--1723325 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1723263 GTTGACTTAG
*
1723273 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
1723299 GCATATGGTGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1723325 G
1 G
1723326 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1724600 original size:892 final size:889
Alignment explanation
Indices: 1716304--1731121 Score: 15957
Period size: 899 Copynumber: 16.7 Consensus size: 889
1716294 CCTACTCGTT
*
1716304 TCGGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
1 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
1716368 GCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAA
66 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
1716433 GTTTTCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATG
131 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1716498 TTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATC
196 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * ** *
1716563 TACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTTGAACTGCAAAAAGTTT
261 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
1716628 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
326 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *** * *
1716693 CCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAA
391 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAA
* * * * *
1716758 ACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCC-AGGGTAGTGCCC
456 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGT----
* * * * *
1716822 GCCCGTCCGCCTGCCCACTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
516 G--C--CCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
* * * * * * *
1716887 GATCAGACCAGA-CTGAGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATC
577 GATCGGACCGGATCAG-GGTTA--GCAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACTGATC
* * * * * *
1716951 CTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTGTCATGGGTTGACT
638 C-CGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
1717016 TAGGCATATGCAGTTCATTCCCAGTCTAAGCATACGGTGTTCATTCCTAGTCTAAGATCGGA-TC
702 TAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-
* * * * **
1717080 AGACCGAGGGTTGC-GACAGCACATGCTGAGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGT
765 GGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * ** * ***
1717144 CGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACAACATTAGGGTTCCGGCAA
829 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
*
1717205 TCGGGGGGTCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
1 TCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1717268 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
1717333 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
1717398 CTTGTACACTTTGCGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCATGT
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** ** * *
1717463 CTACCAAGTTTGGGGGGAAAAAACCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
**
1717528 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
1717593 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAATAT-AAGATGTTCCT
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA-AAAATATGAAGATGTGCCT
* * * *
1717657 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGTCCGACATAGTGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--
* * * * * *
1717722 TGCCCACCTGTCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAA-TATAAGA
515 TGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC-AAGTCTAAGA
* * * * *
1717786 TCGGACCAGACCGAGGGTTGTAGCAGTAGGATCGGCAGCATGCAGAGGAGGG-CCAGA-TCGATC
579 TCGGACCGGATC-AGGG-T-TAGCAGCAGGATCGACAGCACGCAGAGG-GGGACC-GACT-GAT-
* * * * * * *
1717849 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACACTTGTTTCGTAGGTTGACT
637 CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * ** *
1717914 TAGGCATACAGAGTTTATTCCTAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGACTG
702 TAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
* * *
1717979 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTATTCACCG
766 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
* * * * * * * *
1718044 AGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGGCAGCATTGAGGTTCCGACGA
831 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * *
1718103 TCGGGGGGCC-GGGGGGTGTACGCATATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTG
1 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * *
1718167 GCCTCCTATCCCTCATCAAACTTCGAGAACTCGCACCCTCTTAAAGAGCATTTAAGATTTTACAG
66 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
1718232 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGGCACAAAATG
131 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
1718297 TTGTACATTTCAAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATC
196 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** ** *
1718362 TACCAAGTTTGGAGCCAAAACTCCTTTGGAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTT
261 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
1718427 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
326 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *** * *
1718492 CCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAA
391 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAA
* * * *
1718557 ACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-AGGGTAGTGCCC
456 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGT----
* * * * *
1718621 GCCCGTCCGCCTGCCCACTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
516 G--C--CCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
** * * * ** *
1718686 GATCGGATTGGATTGAGGGTTGCGCCAGCAAGAAT-GGTAGCATGCA-AGGGGGACCTGACTGAT
577 GATCGGACCGGA-TCAGGGTT-AG-CAGC-AGGATCGACAGCACGCAGAGGGGGACC-GACTGAT
* * * * * **
1718749 CCCCGACTTGCGTATCTCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTAATGGGTTGA
637 -CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGA
*
1718814 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
700 CTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
1718879 TGGACCGAGGGTTGC-GACAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCG
764 TGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
** * * * **
1718943 TTGGGGCACCATCGCCAGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
828 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * *
1719005 TCGGGCAGGCCGGGGGGGCTGTGAGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATAT
1 TCGGG-GGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
1719070 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTAC
64 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
1719135 AGGTTTGCTGCAAGTAGCCAATAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAA
129 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
1719200 TCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACTAGGATCACG
194 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * *
1719265 ACTACCAAGTTTGGAGCCAAAAATCCTTTCAAAAAAATTTTAAAAAAATCTCGAACCGCAAAAAG
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAG
** *
1719330 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
323 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * ***
1719395 GGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGTCATGCAAAAATATGAAGATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCC
* * *
1719460 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTTTGGCCGGCGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT--
* * *
1719525 CCGCCCGCCCTCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
516 --GCCCG-CCT---GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCT
* * * *
1719590 AAGATCAGACCGGACCAAGGGTTGTGGCAGCAAGATCGACA-CATC-CAGAGGGGGACCCGA-TC
575 AAGATCGGACCGGATC-AGGG-T-TAGCAGCAGGATCGACAGCA-CGCAGAGGGGGA-CCGACT-
* * * * * * * *
1719652 GATCCCCGGCTTGCGTAT-CCGCCGCTCTGGCCGACTGAGCACCCACACGCTCGTTCCGTGGGTT
634 GAT-CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
1719716 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCTCATTCTAAGATCGG
698 GACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * ** *
1719781 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGGTGCATTTTTCTTG
762 ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * **
1719846 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC-ACCGGCATTAGGGTTACGGCGA
827 ACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGATGA
* * * * *
1719909 TCGGGGGGTCGAGGGGGGGGTGTGCACACATAATGTGCGATGGGTGCTGGTATTTGGCACTTATA
1 TCGGGGGG-C--CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
** *
1719974 TTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTA
63 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
1720039 CAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAA
128 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
1720104 ATGTTGTACACTTCAAGTTTTGAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCAC
193 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * ** * * *
1720169 ATCTACCAAGCTTGGGGGCAAAA-TGATTTGCGAAAAAATTTAAAAAAATCCCGAACCGGAAAAA
258 GTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* ** *
1720233 TTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCACGTTGAAGGGCTT
322 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG-TGAA-GGCTT
* * *
1720298 AAGGGACCATTGTATGGAATTTACAAAAGCCATAAAAATGGCATTGGCATGCA-GAAGATATGAT
385 AAGGGACCATTGTAT-GAATTTAC--AAGCCATAAAAATGGCATTGGCA--CATAAAAATATGAA
* * * * *
1720362 GATGTTGCCAAAAACCCACCGACCACCCTCTCGATCCACGGCTTGCGGCATTCCGTCTCTCTGGC
445 GATG-TGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGCCTCTCTGGC
* * *
1720427 TGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTTCATT
507 CGACGTAGTG----CCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAG-TTCATT
* ** * * * **
1720491 CCCAGTCTAAGATCGGGATTGGATCGAGGGTTGCGGCAGCAAGAACGGGTAGCACGCA-A-GGGG
567 CCAAGTCTAAGATC-GGACCGGATC-AGGGTT--AGCAGCAGGATC-GACAGCACGCAGAGGGGG
* *
1720554 A-C--C---T---GA-TT--G-AT-----CCC-C-GGC---CTGCA-CG-CCTCA---T--TTTA
627 ACCGACTGATCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTG-AGCGCCCGCACGCTCGTTTC
* * *
1720589 ATGGGGTGACTTATGCATACGGATGTTCCATTCCCAGTCCTAAGGCATACGGAGTTCA-TCCCAG
691 GTGGGTTGACTTAGGCA-ACGGA-GTT-CATTCCCAGT-CTAA-GCATACGGAGTTCATTCCCAG
* * * * * * *
1720653 TCTAAGATCGGACCAGGACCGGACGGTTGCGGTAGCACATGCTGGGGCTCGAGCATGTGCTGGTT
751 TCTAAGATCAGA-CTGGACC-GAGGGTTGCAGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTG
** * * * * *
1720718 CCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGTCGAAAAACCTGACCGGCGGCATTG
813 CCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* *
1720783 GGGTTACGACGA
878 GGGTTCCGATGA
* *
1720795 TCGGGGGGGTCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
1 TC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1720860 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
64 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
1720925 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
129 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
1720990 TGTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTATGCATGCAAAAAAAATATACAAGGATCAC
194 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCAC
* * * * * *
1721055 ATCTACCAAGTTTAGGGCCAAAACTCTTTCTGAACAAATTTTAAAAAATCCCGAACCGTAAAAAG
258 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* *
1721120 TTTCGAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
323 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
1721185 GGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCACCTAGAAATATGAAGATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCC
* * * * * * * * * *
1721250 GAAACCAACCGACCA--C-ATCGATCCATGGCTTGCACGTCTCGTCTCTCTGGTCGGCGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGC
* * * * * * *
1721312 CCGCCCTCCCGCCCACCCATTCATTTCATC-AGTTGGCTTTGTCATACGGAGGTCATTCCCAGTC
518 CCG-CCT---G-CC-CGC--TCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCAAGTC
* * * * * * * *
1721376 TAAGACCAGACCAGACTGATGGTT-GCGGTAGTAGGATCGACAGCACACAGAGGGGGATCCGACC
574 TAAGATCGGACCGGA-TCAGGGTTAGC---AGCAGGATCGACAGCACGCAGAGGGGGA-CCGACT
* ** *
1721440 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CACTTGAGCGCCCGCACGCTCATTTCGTGGGT
634 GAT-CCCGACTTGCGCATCCCGCCCCTCTGGCTGGC-TGAGCGCCCGCACGCTCGTTTCGTGGGT
1721504 TGACTTAGGCATACGGAGTTCATTCCCAGT-T-----TA---AG---------A-TC--AGAT--
697 TGACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * *
1721546 --C-GGACCGAGGGTTAC-GACAGCACATGCACGGCTCGAGCATGTGCTGGTGCCGTATTTTTCT
761 GACTGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** *
1721607 TTGCCGGGG---CA----C----CAT-GCCGGAGAACCTGACCGACGGCA-TGGGGCTTCCGGTG
825 TCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTCCGATG
1721659 A
889 A
* * ** * *
1721660 TCGAGGGGG-CTGGGGGGTGTGCACACATGATGTGAAATGGGTGTTGGTACTTGGCTCTTATATT
1 TCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
** * * *
1721724 GGTGCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
1721789 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
1721854 CTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTTGTGCATGCCAACAAAAATACAAGGATCGCG
195 CTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
1721919 TCTACCAAGTTTGCGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
1721984 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGG
324 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
1722049 GACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCT
* * * *
1722114 AAACCCACGTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG--
* *
1722179 CGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
517 C--CCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGAT
* * * * *
1722244 AGGGA-CGGACTGAGGGTTATGGAAGTAGGATC-AGCAGCACGCAGAGGGGGACTCGACTAATCC
580 -CGGACCGGA-TCAGGGTTA--GCAGCAGGATCGA-CAGCACGCAGAGGGGGAC-CGACTGATCC
* * *
1722307 CTGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCACGCACGCTCGTTTCGTGGTTTGACTT
639 C-GACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
1722372 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTATGATCAGACTGG
703 AGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
* * * * **
1722437 ACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCATCGTCGG
767 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * * *
1722502 GGCACCATCGTCGGAGCATTGCCAGAGAACTTGACC-AGCAGCATCGGGGTTCCGATGA
832 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGATGA
*
1722560 TCGGGCGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATT
1 TCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
1722624 GTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
1722689 GGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
1722754 CTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTTCATGCCAACAAGAATACAAGGATCACGG
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * * *
1722819 CTACCAAGTTTGAGGCCAAAACTCCTTTTGAAAAGATTTTAAAAAATCTCGAACCGTAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
*
1722884 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *** *
1722949 ACGATTGTATCAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTA
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTA
** *
1723014 AACCCAAATACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-ACGTATTGCCC
455 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCC
* * *
1723078 GCCTGCCCG-TCCGCTTGCTTCGTCGGA-TGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGA
520 GCCTGCCCGCT-CG--T--TTCGTC-GATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGA
* * * * * * * * *
1723141 TCGGACCAGAACTGAGGCTTGTGGCAGCAGGATCGATAGCGCGTAGAGAGGGACCTGGCTGATCC
579 TCGGACC-GGA-TCAGG-GT-TAGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GACTGATCC
* * *
1723206 CTATCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
639 CGA-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
1723271 AGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGTGTTCGTTCCCAGTCTAAGATCAGACTGA
703 AGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
* * * *
1723336 ACCGACGATTGCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGG
767 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
* * * * * * *
1723401 GGCACCATCATTGGAGCATCGTCGGAGAACCTGACTGCCGACATTGGGGTTCTGATGA
832 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
*
1723459 TCGGGGGGGGGCCGGGGGGGTG-GACGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTAT
1 TC---GGGGGGCCGGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
1723523 ATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
62 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
1723588 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAAGGTCACAA
127 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
** * *
1723653 AAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCC
192 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** *
1723718 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCACAAAAA
257 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
** * * *
1723783 GTTTTGAATATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTTAA
322 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
1723848 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGC
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGC
1723913 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG
452 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG
* * * *
1723978 CCCGCCTGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCTAAGTCTAACATTG
517 CCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCG
* *
1724043 GACTGGATCATGGGTT-GCAGCAGGATCGACAGCACGCAGAGGGGGATCCGACCGATCGCCGACT
582 GACCGGATCA-GGGTTAGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACTGATC-CCGACT
* * * * * *
1724107 TGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGC-A
644 TGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAA
* ** *
1724171 CGGAGTTCATTCCGAAGTCTAAGCATACGGAGTTCATTCTGAGTCTAAGATCACA-TCGGACCGA
709 CGGAGTTCATTCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGA
** * * * * * * * *
1724235 GGGTTGTGGCAGCCCATGCTGGGTTCGGGTAGGTGCGGGAGCCGTATTTTTCTTCGCCGGGGCAC
772 GGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC
* ** * *
1724300 CATCGCCGGAGCATCGTTGGAGAACCTGACC-AGTGGCATTGGGGTTCCGACGA
837 CATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGATGA
1724353 TCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 TCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
1724418 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
1724483 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
1724548 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATAAAAGGATCACAT
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
1724613 CTACCAAGTTTGGGGCCAAAACTACTTCC-AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
** * *
1724677 TTGAAAATCGTGAAAAATAGAAAACGAG-AGATCTAGCCATGAAACTTCACGTGAAGGGCTTAAG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCG-TCTTGCCATGAAACTTCACGTGAA-GGCTTAAG
*
1724741 GGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAT--AAATATGAAGATGTG
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAAAAATATGAAGATGTG
* *
1724804 CCTAAACCCAACTACCACCCTATCGATCCAC-GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
451 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
* *
1724868 GCCCGCCCGTCCGCCCGCTCGCTTCGTCGGA-TGGCTTAGGCATACGAAGTTCATTCCAAGTCTA
516 GCCCG-CC-T--GCCCGCTCGTTTCGTC-GATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
* * * * *
1724932 AGATCAGACCGAATCGAGGGTTCCAACAGCAGGATC-AGCAGCACGTAGAGGGGGACCCG-GTCG
576 AGATCGGACCGGATC-AGGGTT--AGCAGCAGGATCGA-CAGCACGCAGAGGGGGA-CCGACT-G
* *
1724995 ATCCTCGACATGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTG
635 ATCC-CGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
1725060 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
699 ACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* *
1725125 AC-AGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
762 ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
1725189 ACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
827 ACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * ** * *
1725252 TCGGGGGGGCCGGGGGAGTGGGCGCACATGATGTATGATGGATGCTGGTACTTGACCCTTATATT
1 TC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1725317 GGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
1725382 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAA
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
1725447 ATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCCCAT
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * **
1725512 CTACCATGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCTAACCATAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
*
1725577 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
1725642 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAATA--AATATGTGCCT
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA-AAAATATGAAGATGTGCCT
*
1725705 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC
* * * * * * * * *
1725770 TGCCCGCCCGCTTGTTTCGTTGGTTGGCTCAGGCATAAGGAGTTCATTCCCAGT-TAAGATCAGA
519 CGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGA
* * * * ** * *
1725834 TCAGATCGAGGGTTACAGTAGTAGGATCGGTAGCATGCAGAGGTGGACCAGACTGATCCCTGACT
584 CCGGATC-AGGGTT--AGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GACTGATCCC-GACT
* * * *
1725899 TGCGCTTCCCGCCCCTCTGGCCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGG---
644 TGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAA
* * * * *
1725961 C--A---CATTCCCAGTCAAAG-AT-C-GA----A---CCGGAC-ATG-T--G-CTGGGCTCG-G
709 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC-CGAG
* * ** ** **** * * * * *
1726005 GCATGTGCTGGTGCCACATTTTTTTTTATCGGGGCA---CCATCGT--CGGA----GCATCACCG
773 G-GT-TGCAGCAG-CACA--TGCTGGGCTC-GGGCATGTGC-TGGTGCCGCATTTTTCTTCACCG
*** * ** * ** * ** *** *
1726061 GATAACC-T-GACCAACGGCATTG--GG-GTTCCGATGATCAGGGGGGCCGGGGGGGTGTGCGCA
831 GGGCACCATCGTCGGA--GCATCGCCGGAGAACC--TGA-C-CGACGG-CATTGGGGT-TCCG-A
*
1726121 -CA
887 TGA
** * ** * ** ** ** ** * ** *
1726123 -CGATGCG-C-GATGGGTGCTGC-TAC-T--TG-GCCCT-TATATTGGCCCCCTATCCCTCATCA
1 TCGGGGGGCCGGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGG-TACTTGGCCCTTAT-A
** * * *** * * * * ****** *
1726179 ---AACCTCGAGAACTCA-C-ACCCCCTTA-AA--GAGCA-TTTGAGAT--------------TT
63 TTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTT
1726221 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
126 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
1726286 AAATCTTGTACACATCGAGTTTTTAACTAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATC
191 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
1726351 ATGTCTACCAAGTTTGGGGCCAAAATTCCTTTC-AAAAAACTTTAAAAAAATCCCGAACCTCAAA
256 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAA
* * * * *
1726415 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGATT
320 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** *
1726480 AAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
385 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGT
* *
1726545 GCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
450 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAG
* *
1726610 TGCCCGCCCACCTGCCC-CTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTACC-AGTCT
515 TGCCCG----CCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT-CCAAGTCT
* * * * *
1726673 AAGATCAGATCGGACTGATGCG---GCAGCAGGATC-AGCAGCACGCAGA-GGGGACTCGA-TCA
575 AAGATCGGACCGGA-TCA-GGGTTAGCAGCAGGATCGA-CAGCACGCAGAGGGGGAC-CGACT-G
** * * * *
1726732 ATCCCCGACTTATGCATCCCGCCCCTCTGGGTGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTG
635 AT-CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
1726797 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGGTCGGA
699 ACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC--A
* * * *
1726862 TTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTT
761 ---GACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * * *
1726927 CTTCGTCGGGGCAGCATCATCGAAGCAT---C-----ACC-G---GA--G-A-------ACC---
823 CTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
1726967 --
888 GA
* ** * * *
1726967 T-----GGCC-GGGGGGTGTGCGCACATGATGTGCAACAGGTACCGATACTTGGCCCTTATATTG
1 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
1727026 GCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCGCCTTAAAAAGCATTTGAGATTTTACAG
66 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
1727091 CTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
131 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
1727156 TTGTAAACTTCAAG-TTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
196 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
1727220 TACCAAGTTTGGGGCCAAAACTCGTTGCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
261 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
1727285 CAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
326 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * ** *
1727350 CCATTGTATGAATTTACAAGAAACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
391 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAA
* * * * *
1727415 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTTTGGTCGGCGTAGTGCCTT
456 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG----
* * *
1727480 CCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTC
517 CCCG-CC-T------GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTC
* * * * * * * *
1727545 TAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGCACTGA-TCG
574 TAAGATCGGACCGGATC-AGGGTT--AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGACT-G
* * *
1727609 ATCCCCAGCTTGCGCATCTCGCCCCTATGG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
635 ATCCCGA-CTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
1727673 AACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATGCGGAGTTCATTACCAGTCTAAAATCAG
698 GACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
1727738 ACTAGATCGAGGGTTGCGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTT
762 ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
1727803 GCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGACGACATTGGGGTTCCGACGA
827 ACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* *
1727866 TCGGGTGGGCCGGGGGGTGGGTGTGCGCACATCATGTGCGATGGGTGTTGGTACTTGGCCCTTAT
1 TCGGG-GGGCC--GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1727931 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
62 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
1727996 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAA
127 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
1728061 AATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATC
192 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATC
* ** * *
1728126 ATGTCTATGAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
256 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * *
1728191 AGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTA
321 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
1728256 AGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACACAGAAATATGAAGATGTG
386 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTG
* * * * *
1728320 CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCTCGTCTCTCTGGACGACGTAGT
451 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
* * * * * * *
1728385 GCCCGCCCGACCACCCACTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
516 GCCCGCCTG----CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
* * * * * *
1728450 GATCGGATCGAACTGAGGGTTACGGCTGTAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGAT
577 GATCGGACCGGA-TCAGGGTTA--GCAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACT-GAT
* * * * * * * *
1728514 CCCCGGCTTGCGAATCCCACCCCTTTGGCCGGCTGAGCGTCCGCACACTCGTTTCATGGGTTGAC
637 -CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
1728579 TTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GAT----C-
701 TTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * **
1728618 GGACCGAGGGTTACGGCAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTGCTTCGTC
765 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * *
1728683 GGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCGGCAATGGGGTTCCAACGA
830 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * * *
1728732 TCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGCACTTGGCCCCTATATT
1 TC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1728797 GGCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
1728862 GGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
1728926 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
1728991 CTACCAAGTTTGGGGCCAAAACTCTTTCCG-AAAAATTTTAAAAAAT-CCAAACCGCAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * *
1729054 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
325 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
1729119 ACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTA
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTA
* **
1729184 AACCCACCTACCACCCTATCGATCCAC-GCTTGCGCAT-CCGTCTCT-TGGCCGGTGTAGTGCCT
455 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--T
* ** *
1729246 GCCCTCCCGCCCGCCCGCTCGTTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
516 G----CCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
* * * * * *
1729311 GATCGGACTGGACTGAGGGTT-GCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCAGTCGAT
577 GATCGGACCGGA-TCAGGGTTAGC---AGCAGGATCGACAGCACGCAGAGGGGGACCGACT-GAT
* * * * * * *
1729375 CCCCGGCTTGCGCATCCCACCTCTCTGG-TCGGCTCAGCGCCCGCACGCTTGTTTCATTGGTTGA
637 -CCCGACTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
1729439 CTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
700 CTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
1729504 TGGACTGAGGGTTGC-GCTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCG
764 TGGACCGAGGGTTGCAGC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * * * * * ** * * * *
1729568 TCGAGGTACGATAGTCGGAGCATCACCGGAGAACCTGATCGATAGTATTGGAGTACCGACGA
828 CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * *
1729630 T-GGAGGGGTC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATT
1 TCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1729693 GGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
1729758 GGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * **
1729823 CTTGTACACTTCGA-TTTGTT-GGTGGTATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGT
195 CTTGTACACTTCGAGTTT-TTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * **
1729886 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAAAGGCAAAAAG
258 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * * * * *
1729951 TTTCAAAAATCTTAAAAAATAAAAAACGAGTCGTCTTGCCATAAAACTTCATGTGGAGGCTTAAG
323 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * * * *
1730016 GGACCATTGTATAAATTTATAGGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCC
* *
1730081 TAAACCCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCAGGA-GTAGTG
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC-CGACGTAGTG
* * * *
1730144 CCCGTCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
517 --C--CCGCCTGCCCG----CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTC
* * * * *
1730209 TAAGATCAGACCGGATCGAGGGTTGCGGCAACAGGATCAACAGCACGCAGAGAGGGACCTGACTG
574 TAAGATCGGACCGGATC-AGGGTT--AGCAGCAGGATCGACAGCACGCAGAGGGGGACC-GACTG
* * * * * * *
1730274 ATCCCCAGCTTGCGCATCTCGTCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTA
635 ATCCCGA-CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
1730339 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GA
699 ACTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
** * * * * ** *
1730403 ACCAGACCGAGGGTTACAGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCAAATTTTTCTTT
762 ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * * *
1730468 GCTGGGACACCATCATCGGAGCATCACCGGAGAACTTGACCGACGACATTGGGATTCCGATGA
827 ACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
* * *
1730531 TCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATT
1 TC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
1730595 GGCCCCCTATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
65 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
1730660 GGTTTACTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
130 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
1730725 CTTGTACACTTAGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGT
195 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
1730789 CTACCAAGTTTAGGGCCAAAAATCCATCC-AAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGT
* * *
1730853 TTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTGAGG
324 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
1730918 GACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCT
* * *
1730983 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC
* * * *
1731048 CGCCTGCCCGCCCGCTCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTA
519 CGCCT----GCCCG----CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
1731113 AGATCGGAC
576 AGATCGGAC
1731122 TGGACTGATG
Statistics
Matches: 11920, Mismatches: 1454, Indels: 1085
0.82 0.10 0.08
Matches are distributed among these distances:
840 4 0.00
841 9 0.00
842 13 0.00
843 341 0.03
844 98 0.01
845 10 0.00
846 3 0.00
847 45 0.00
848 25 0.00
849 10 0.00
850 2 0.00
851 2 0.00
852 13 0.00
853 2 0.00
855 2 0.00
857 10 0.00
858 11 0.00
859 117 0.01
860 84 0.01
861 237 0.02
862 247 0.02
863 553 0.05
864 310 0.03
865 135 0.01
866 95 0.01
867 20 0.00
868 30 0.00
869 17 0.00
870 28 0.00
871 17 0.00
872 100 0.01
873 61 0.01
874 46 0.00
875 28 0.00
876 25 0.00
877 251 0.02
878 82 0.01
879 13 0.00
880 39 0.00
881 28 0.00
882 19 0.00
883 32 0.00
884 44 0.00
885 265 0.02
886 210 0.02
887 75 0.01
888 60 0.01
889 5 0.00
890 7 0.00
891 131 0.01
892 359 0.03
893 24 0.00
894 267 0.02
895 195 0.02
896 162 0.01
897 219 0.02
898 941 0.08
899 1228 0.10
900 364 0.03
901 1057 0.09
902 1108 0.09
903 123 0.01
904 274 0.02
905 556 0.05
906 330 0.03
907 22 0.00
908 12 0.00
909 276 0.02
910 158 0.01
911 170 0.01
912 39 0.00
913 25 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG
CCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACC
GGATCAGGGTTAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGACTGATCCCGACTTGCGCAT
CCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGA
Found at i:1725102 original size:26 final size:26
Alignment explanation
Indices: 1725066--1725118 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1725056 GTTGACTTAG
1725066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1725092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1725118 G
1 G
1725119 ATCGGAACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1726833 original size:26 final size:26
Alignment explanation
Indices: 1726803--1726855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1726793 GTTGACTTAG
*
1726803 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1726829 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1726855 G
1 G
1726856 GTCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1727716 original size:26 final size:26
Alignment explanation
Indices: 1727680--1727731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1727670 GTTAACTTAG
1727680 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTACC-AGTCTAA
*
1727706 GCATGCGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
1727732 AATCAGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:1729475 original size:26 final size:26
Alignment explanation
Indices: 1729444--1729496 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1729434 GTTGACTTAG
*
1729444 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1729470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1729496 G
1 G
1729497 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1730360 original size:901 final size:897
Alignment explanation
Indices: 1728583--1731134 Score: 3630
Period size: 901 Copynumber: 2.8 Consensus size: 897
1728573 GTTGACTTAG
* *
1728583 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTACGGC-AGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTACAGCTAGCACATGCTG
* * * * * *
1728646 GACTCGGGCATGTGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--T
65 GGCTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTC-GGGCACCATAGTCGGAGCATCACCGGA
* * *
1728706 G-ACC-G-GCG-GCAATGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
129 GAACCTGACCGAGC-ATTGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
* * *
1728767 TGATGGGTGCTGGCACTTGGCCCCTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1728832 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1728896 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAATTTTTTTG
* *
1728961 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG-AAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
*
1729025 ATTTTAAAAAAT-CC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
450 ATTTTAAAAAATCCCGAAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1729088 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGT
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1729153 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGC
579 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1729217 GCAT-CCGTCTCT-TGGCCGGTGTAGTGCCTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGCTGG
644 GCATCCCGTCTCTCTGGCCGGAGTAGTGCCCG-CCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * *
1729280 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGATAGCAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAACAGGAT
** * * * *
1729345 CGGCAGCACACAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACCTCTCTGGTCGGCTC
773 CAACAGCACACAGAGAGGGACCCACTCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGGCTC
* * * * * *
1729410 AGCGCCCGCACGCTTGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
838 AGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1729470 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGC-GCTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACAGCTAGCACATGCTGG
* * *
1729534 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGTACGATAGTCGGAGCATCACCGGAG
66 GCTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCG-GGCACCATAGTCGGAGCATCACCGGAG
* * * *
1729599 AACCTGATCGATAGTATTGGAGTACCGACGAT-GGAGGGGTCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCG--AGCATTGG-GTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
* *
1729663 CAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1729728 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1729793 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTGTT-GGTGGTATTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT-TTAGCT-GAATTTTTTT
**
1729857 GTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAA
* * * * *
1729922 AATTTAAAAAAATCCCGAAAGGCAAAAAGTTTCAAAAATCTTAAAAAATAAAAAACGAGTCGTCT
449 AATTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * * *
1729987 TGCCATAAAACTTCATGTGGAGGCTTAAGGGACCATTGTATAAATTTATAGGCCACAAAAATGGC
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1730052 ATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGC
579 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
1730116 GCATCCCGTCTCTCTGGCAGGAGTAGTGCCCGTCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
644 GCATCCCGTCTCTCTGGCCGGAGTAGTGCCCG-CCGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* *
1730181 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGCAACAGGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAACAGGA
* * **
1730245 TCAACAGCACGCAGAGAGGGACCTGACT-GATCCCCAGCTTGCGCATCTCGTCC-CTCTGGCCGG
772 TCAACAGCACACAGAGAGGGACC-CACTCGATCCCCAGCTTGCGCATC-CCACCTCTCTGGCCGG
*
1730308 CTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 CTCAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** *
1730371 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAG-TAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACAGCTAGCACATGCTGG
* *
1730435 GCTCGAGCATGTGCTGGTGCCAAATTTTTCTTTG-CTGGGACACCATCA-TCGGAGCATCACCGG
66 GCTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTC-GGG-CACCAT-AGTCGGAGCATCACCGG
* *
1730498 AGAACTTGACCGACGACATTGGGATTCCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATG
128 AGAACCTGACCGA-G-CATTGGG-TTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATG
* * * * *
1730563 TGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1730628 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTAAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1730693 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGATTTTTAGCTGAATTTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCTGAATTTTTTT
* * * * *
1730758 GTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCATCCAAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
* * *
1730823 AGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCT
450 A-TTTTAAAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
1730888 TGCCATGAAAGTTCACGTGAAGGCTTGAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
1730953 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
579 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1731018 GCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCTGCCCGCCCGCTCACTCGTTTCATCGGTTGG
644 GCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCC-GCCCGCCCGCCCACTCGTTTCGTCGGTTGG
* * * *
1731083 CTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGACTGGACTGATGGTT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
1731135 TTGGTAGCAC
Statistics
Matches: 1481, Mismatches: 143, Indels: 67
0.88 0.08 0.04
Matches are distributed among these distances:
886 3 0.00
887 100 0.07
888 2 0.00
890 3 0.00
892 1 0.00
893 3 0.00
894 1 0.00
895 2 0.00
896 146 0.10
897 128 0.09
898 28 0.02
899 164 0.11
900 23 0.02
901 559 0.38
902 317 0.21
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACAGCTAGCACATGCTGG
GCTCGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGCACCATAGTCGGAGCATCACCGGAGA
ACCTGACCGAGCATTGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTA
AAAAATCCCGAAACGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGAGTAGTGCCCGCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAACAGGATCAACAGCA
CACAGAGAGGGACCCACTCGATCCCCAGCTTGCGCATCCCACCTCTCTGGCCGGCTCAGCGCCCG
CACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1730375 original size:26 final size:26
Alignment explanation
Indices: 1730345--1730397 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1730335 GTTAACTTAG
1730345 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1730371 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1730397 G
1 G
1730398 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1732302 original size:59 final size:59
Alignment explanation
Indices: 1732175--1732458 Score: 308
Period size: 59 Copynumber: 4.7 Consensus size: 59
1732165 TCTTGTGTAG
* * *
1732175 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* *
1732232 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTGCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* * * *
1732291 GGAAAATTGATACTTTCGACTTTTCCTCAAAAATTTTTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-----TATTTTTTTTGAAAATTTATTTCTAA
* * * ** *
1732355 GGAAAATGGATTACTTTCAACTTTT-TCCTAAAATA-TTTTTCAGAAATTTTGATTT-TCAA
1 GGAAAATTGA-TACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCT-AA
*
1732414 GGAAGATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAAATATTTTTTTTG
1732459 GAACTTTTGA
Statistics
Matches: 188, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
57 34 0.18
58 27 0.14
59 66 0.35
60 6 0.03
61 6 0.03
64 36 0.19
65 13 0.07
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
Done.