Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 104 of 129
Found at i:17302081 original size:13 final size:13
Alignment explanation
Indices: 17302063--17302087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17302053 TATTTCTGCT
17302063 TCTTTTTTATTTC
1 TCTTTTTTATTTC
17302076 TCTTTTTTATTT
1 TCTTTTTTATTT
17302088 GCTATTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTTATTTC
Found at i:17302263 original size:20 final size:20
Alignment explanation
Indices: 17302240--17302277 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
17302230 ATTTAATTAT
17302240 TTATTTCTT-TATTATTTACA
1 TTATTTCTTCTATT-TTTACA
17302260 TTATTTCTTCTATTTTTA
1 TTATTTCTTCTATTTTTA
17302278 AGCAGCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTTCTTCTATTTTTACA
Found at i:17312258 original size:2 final size:2
Alignment explanation
Indices: 17312253--17312278 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
17312243 TATATGTGTG
17312253 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
17312279 CACGTATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17320086 original size:15 final size:14
Alignment explanation
Indices: 17320061--17320090 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
17320051 GTTATAAATG
17320061 ATTAACTTATTTATT
1 ATTAACTTA-TTATT
17320076 ATTAACTTATTATT
1 ATTAACTTATTATT
17320090 A
1 A
17320091 ATTTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTAACTTATTATT
Found at i:17320087 original size:11 final size:11
Alignment explanation
Indices: 17320069--17320377 Score: 119
Period size: 11 Copynumber: 28.9 Consensus size: 11
17320059 TGATTAACTT
17320069 ATTTATTATTA
1 ATTTATTATTA
*
17320080 ACTTATTATTA
1 ATTTATTATTA
*
17320091 ATTTA-AATTA
1 ATTTATTATTA
* *
17320101 AATTATTAGTA
1 ATTTATTATTA
*
17320112 ATTTACTATTA
1 ATTTATTATTA
** * *
17320123 CGTTATTAGTG
1 ATTTATTATTA
*
17320134 ATTTATTGTTA
1 ATTTATTATTA
*
17320145 A---GTTATTA
1 ATTTATTATTA
17320153 ATTTATTATTA
1 ATTTATTATTA
* * *
17320164 AATTACTAATA
1 ATTTATTATTA
*
17320175 ATTTATTATTTC
1 ATTTATTA-TTA
17320187 ATTTGA-TA-T-
1 ATTT-ATTATTA
17320196 ATTTATTA-TA
1 ATTTATTATTA
*
17320206 ATGTTATTATTG
1 AT-TTATTATTA
*
17320218 ATTTACTTCTTA
1 ATTTA-TTATTA
**
17320230 ATTTACCGATT-
1 ATTTA-TTATTA
**
17320241 ATTTATTAAAA
1 ATTTATTATTA
* * *
17320252 AGTTATAAATA
1 ATTTATTATTA
17320263 A-TTA--ATTA
1 ATTTATTATTA
17320271 ATTTATTATTA
1 ATTTATTATTA
* * *
17320282 AATTATTACTG
1 ATTTATTATTA
*
17320293 A-TTA-AATTA
1 ATTTATTATTA
* *
17320302 AATTATTAATA
1 ATTTATTATTA
*
17320313 ATTTACTATT-
1 ATTTATTATTA
*
17320323 ATGTTATTAGTA
1 AT-TTATTATTA
*
17320335 ATTTATTGTTA
1 ATTTATTATTA
* *
17320346 AGTTATTAATTT
1 ATTTATT-ATTA
*
17320358 A-TTATTAATA
1 ATTTATTATTA
17320368 ATTTATTATT
1 ATTTATTATT
17320378 TTATTTTTAT
Statistics
Matches: 213, Mismatches: 64, Indels: 42
0.67 0.20 0.13
Matches are distributed among these distances:
8 11 0.05
9 13 0.06
10 26 0.12
11 135 0.63
12 27 0.13
13 1 0.00
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.54
Consensus pattern (11 bp):
ATTTATTATTA
Found at i:17320101 original size:21 final size:21
Alignment explanation
Indices: 17320076--17320116 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
17320066 CTTATTTATT
* *
17320076 ATTAACTTATTATTAATTTAA
1 ATTAAATTATTAGTAATTTAA
17320097 ATTAAATTATTAGTAATTTA
1 ATTAAATTATTAGTAATTTA
17320117 CTATTACGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
ATTAAATTATTAGTAATTTAA
Found at i:17320173 original size:19 final size:19
Alignment explanation
Indices: 17320134--17320173 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
17320124 GTTATTAGTG
* * *
17320134 ATTTATTGTTAAGTTATTA
1 ATTTATTATTAAATTACTA
17320153 ATTTATTATTAAATTACTA
1 ATTTATTATTAAATTACTA
17320172 AT
1 AT
17320174 AATTTATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTTATTATTAAATTACTA
Found at i:17320317 original size:201 final size:201
Alignment explanation
Indices: 17319999--17320365 Score: 578
Period size: 201 Copynumber: 1.8 Consensus size: 201
17319989 ATTGGTGATA
** *
17319999 ATTATAAAATTATAATTGATTTATTACTAATTTATTGATTATTTATTAAAAAGTTATAAATGATT
1 ATTATAAAATTATAATTGATTTATTACTAATTTACCGATTATTTATTAAAAAGTTATAAATAATT
* * *
17320064 AACTTATTTATTATTAACTTATTATTAATTTAAATTAAATTATTAGTAATTTACTATTACGTTAT
66 AACTTATTTATTATTAAATTATTACTAATTTAAATTAAATTATTAATAATTTACTATTACGTTAT
*
17320129 TAGTGATTTATTGTTAAGTTATTAATTTATTATTAAATTACTAATAATTTATTATTTCATTTGAT
131 TAGTAATTTATTGTTAAGTTATTAATTTATTATTAAATTACTAATAATTTATTATTTCATTTGAT
17320194 ATATTT
196 ATATTT
** *
17320200 ATTATAATGTTATTATTGATTTACTT-CTTAATTTACCGATTATTTATTAAAAAGTTATAAATAA
1 ATTATAAAATTATAATTGATTTA-TTAC-TAATTTACCGATTATTTATTAAAAAGTTATAAATAA
* *
17320264 TTAA-TTAATTTATTATTAAATTATTACTGA-TTAAATTAAATTATTAATAATTTACTATTATGT
64 TTAACTT-ATTTATTATTAAATTATTACTAATTTAAATTAAATTATTAATAATTTACTATTACGT
17320327 TATTAGTAATTTATTGTTAAGTTATTAATTTATTATTAA
128 TATTAGTAATTTATTGTTAAGTTATTAATTTATTATTAA
17320366 TAATTTATTA
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
201 92 0.61
202 59 0.39
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (201 bp):
ATTATAAAATTATAATTGATTTATTACTAATTTACCGATTATTTATTAAAAAGTTATAAATAATT
AACTTATTTATTATTAAATTATTACTAATTTAAATTAAATTATTAATAATTTACTATTACGTTAT
TAGTAATTTATTGTTAAGTTATTAATTTATTATTAAATTACTAATAATTTATTATTTCATTTGAT
ATATTT
Found at i:17322525 original size:2 final size:2
Alignment explanation
Indices: 17322509--17322546 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
17322499 TTTGACATCC
* *
17322509 AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17322547 GCTTTACCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:17324208 original size:22 final size:21
Alignment explanation
Indices: 17324158--17324215 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
17324148 ATAACTTATA
17324158 ATATAATTTTGGTAACCATTG
1 ATATAATTTTGGTAACCATTG
* **
17324179 ATAAAATTTTGGTAAGCTTTTG
1 ATATAATTTTGGTAA-CCATTG
*
17324201 ATATAATTTTAGTAA
1 ATATAATTTTGGTAA
17324216 TTAACCTTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 14 0.45
22 17 0.55
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (21 bp):
ATATAATTTTGGTAACCATTG
Found at i:17324610 original size:22 final size:22
Alignment explanation
Indices: 17324538--17324619 Score: 65
Period size: 22 Copynumber: 3.7 Consensus size: 22
17324528 ATAATTATTA
** * *
17324538 ATTTACTATTATGTTATCAGCG
1 ATTTACTATTAAATTATAAACG
* * **
17324560 ATTTAATATTAAATTATCAATT
1 ATTTACTATTAAATTATAAACG
* *
17324582 ATCTACTGTTAAATTATAAACG
1 ATTTACTATTAAATTATAAACG
*
17324604 ATTTACTACTAAATTA
1 ATTTACTATTAAATTA
17324620 GCATTGATTA
Statistics
Matches: 45, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (22 bp):
ATTTACTATTAAATTATAAACG
Found at i:17324663 original size:11 final size:11
Alignment explanation
Indices: 17324647--17324863 Score: 56
Period size: 11 Copynumber: 19.8 Consensus size: 11
17324637 TTTATGAGTG
17324647 ATTTATTATTA
1 ATTTATTATTA
* *
17324658 AGTTATTGACTA
1 ATTTATT-ATTA
*
17324670 ATTTATTGTTA
1 ATTTATTATTA
* *
17324681 ATTTATTAATG
1 ATTTATTATTA
*
17324692 ATTTACTA-TA
1 ATTTATTATTA
* *
17324702 A--AATAATTA
1 ATTTATTATTA
* *
17324711 A-TGATTAGCTA
1 ATTTATTA-TTA
* *
17324722 ATTTAGTACTTG
1 ATTTATTA-TTA
*
17324734 A-TTATTACTA
1 ATTTATTATTA
*
17324744 ATTTATGATTA
1 ATTTATTATTA
* * *
17324755 AGTTATTAGTG
1 ATTTATTATTA
17324766 ATTTATTATTA
1 ATTTATTATTA
* * **
17324777 AATTATAAAAA
1 ATTTATTATTA
*
17324788 ATTTA-CATATA
1 ATTTATTAT-TA
* * * *
17324799 AATTATCAATG
1 ATTTATTATTA
17324810 ATTTATTATT-
1 ATTTATTATTA
17324820 ATATTATCT-TTA
1 AT-TTAT-TATTA
17324832 ATTTATTACTTA
1 ATTTATTA-TTA
*
17324844 ATTTTTTGATT-
1 ATTTATT-ATTA
17324855 ATTTATTAT
1 ATTTATTAT
17324864 AAAATATATT
Statistics
Matches: 143, Mismatches: 49, Indels: 29
0.65 0.22 0.13
Matches are distributed among these distances:
8 2 0.01
9 3 0.02
10 13 0.09
11 93 0.65
12 31 0.22
13 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.52
Consensus pattern (11 bp):
ATTTATTATTA
Found at i:17324716 original size:88 final size:86
Alignment explanation
Indices: 17324504--17324717 Score: 196
Period size: 88 Copynumber: 2.4 Consensus size: 86
17324494 AATATAAAAA
* * *
17324504 AATTTATTAATGATTGACAATTAAATAATTATTAATTTACTATTATGTTATCAGCGATTTAATAT
1 AATTTATTAATGATTTACTA-TAAATAATTATTGA-TTACTATTATGTTATCAGCGATTTAATAT
*
17324569 TAAATTATCAATTATCTACTGTT
64 TAAATTATCAATAATCTACTGTT
* * * * ** * * *
17324592 AAATTATAAACGATTTACTACTAAATTAGCATTGATTACTATTGAT-TTATGAGTGATTTATTAT
1 AATTTATTAATGATTTACTA-TAAATAATTATTGATTACTATT-ATGTTATCAGCGATTTAATAT
* * * * *
17324656 TAAGTTATTGACTAATTTATTGTT
64 TAAATTA-TCAATAATCTACTGTT
*
17324680 AATTTATTAATGATTTACTATAAAATAATTAATGATTA
1 AATTTATTAATGATTTACTAT-AAATAATTATTGATTA
17324718 GCTAATTTAG
Statistics
Matches: 97, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
87 30 0.31
88 67 0.69
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (86 bp):
AATTTATTAATGATTTACTATAAATAATTATTGATTACTATTATGTTATCAGCGATTTAATATTA
AATTATCAATAATCTACTGTT
Found at i:17324760 original size:22 final size:22
Alignment explanation
Indices: 17324734--17324782 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
17324724 TTAGTACTTG
17324734 ATTATTACTAATTTATGATTAA
1 ATTATTACTAATTTATGATTAA
* * * *
17324756 GTTATTAGTGATTTATTATTAA
1 ATTATTACTAATTTATGATTAA
17324778 ATTAT
1 ATTAT
17324783 AAAAAATTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (22 bp):
ATTATTACTAATTTATGATTAA
Found at i:17324827 original size:22 final size:22
Alignment explanation
Indices: 17324744--17324827 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
17324734 ATTATTACTA
* * * *
17324744 ATTTATGATTAAGTTATTAGTG
1 ATTTATTATTAAATTATCAATG
* **
17324766 ATTTATTATTAAATTATAAAAA
1 ATTTATTATTAAATTATCAATG
*
17324788 ATTTA-CATATAAATTATCAATG
1 ATTTATTAT-TAAATTATCAATG
*
17324810 ATTTATTATTATATTATC
1 ATTTATTATTAAATTATC
17324828 TTTAATTTAT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
21 2 0.04
22 44 0.92
23 2 0.04
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (22 bp):
ATTTATTATTAAATTATCAATG
Found at i:17324896 original size:20 final size:20
Alignment explanation
Indices: 17324871--17324913 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
17324861 TATAAAATAT
*
17324871 ATTGCTTGTTTAAAATGTTG
1 ATTGCTTGCTTAAAATGTTG
*
17324891 ATTGCTTGCTTGAAATGTTG
1 ATTGCTTGCTTAAAATGTTG
17324911 ATT
1 ATT
17324914 ATATAAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.07, G:0.21, T:0.49
Consensus pattern (20 bp):
ATTGCTTGCTTAAAATGTTG
Found at i:17327957 original size:162 final size:162
Alignment explanation
Indices: 17327778--17328416 Score: 998
Period size: 162 Copynumber: 4.0 Consensus size: 162
17327768 ACCAATTTTC
* ***** ** *
17327778 TTGAAAATTAATTTTAATAAGTTATATAAGTTTTGAAATTTTTTTTTGAAAATTTATTTAACTTA
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATTTCAAAAAATTATTTAACTTA
17327843 CTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
66 CTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
17327908 AATATGAAGAGCAAAATTTAAAATATAACTTT
131 AATATGAAGAGCAAAATTTAAAATATAACTTT
* ** **
17327940 TTGAAAATTAATTTTAATAAGTTATATAAGTTTTGAAAAAAGTTTTCAAAAAATTAGGTAACTTA
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATTTCAAAAAATTATTTAACTTA
*
17328005 CTATATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
66 CTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
*
17328070 AATATGAAGAGCAAAATTTAAAATATAACATT
131 AATATGAAGAGCAAAATTTAAAATATAACTTT
* *
17328102 TTGAAAATTAATTTAAATACGTTATATAAGTTTTGAAAAAAAA-TTC-AAAAATTTTTATAACTT
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATTTCAAAAAATTATT-TAACTT
* * * *
17328165 ACTAAATAAAGATATTTAAAAATTTATAAAAAAAAATTAATTAGTCTTAATTAAAAATAAATTAA
65 ACTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAA
*
17328230 AAATATGAAGAGCAAAATTTAAAATATAACTAT
130 AAATATGAAGAGCAAAATTTAAAATATAACTTT
* *
17328263 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATATCAAAAAATTATATAACTTA
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATTTCAAAAAATTATTTAACTTA
17328328 CTAAATAAAGATATTTAAAAA-TTATATAAAAA-AATTAAATAGTTTTACTTAAAAATAAATTAA
66 CTAAATAAAGATATTTAAAAATTTATA-AAAAATAATTAAATAGTTTTACTTAAAAATAAATTAA
*
17328391 AAATACGAAGAGCAAAATTTAAAATA
130 AAATATGAAGAGCAAAATTTAAAATA
17328417 CATTTAAAAA
Statistics
Matches: 440, Mismatches: 33, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
160 7 0.02
161 200 0.45
162 225 0.51
163 8 0.02
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (162 bp):
TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAAAAAAATTTCAAAAAATTATTTAACTTA
CTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
AATATGAAGAGCAAAATTTAAAATATAACTTT
Found at i:17328179 original size:323 final size:323
Alignment explanation
Indices: 17327778--17328416 Score: 1032
Period size: 323 Copynumber: 2.0 Consensus size: 323
17327768 ACCAATTTTC
* ***** **
17327778 TTGAAAATTAATTTTAATAAGTTATATAAGTTTTGAAATTTTTTTTTGAAAATTTATTTAACTTA
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAATAAAAATTCAAAAATTTATTTAACTTA
* * *
17327843 CTAAATAAAGATATTTAAAAATTTATAAAAAATAATTAAATAGTTTTACTTAAAAATAAATTAAA
66 CTAAATAAAGATATTTAAAAATTTATAAAAAAAAATTAAATAGTCTTAATTAAAAATAAATTAAA
* *
17327908 AATATGAAGAGCAAAATTTAAAATATAACTTTTTGAAAATTAATTTTAATAAGTTATATAAGTTT
131 AATATGAAGAGCAAAATTTAAAATATAACTATTTGAAAATTAATTTAAATAAGTTATATAAGTTT
** * * *
17327973 TGAAAAAAGTTTTCAAAAAATTAGGTAACTTACTATATAAAGATATTTAAAAATT-TATAAAAAA
196 TGAAAAAAAATATCAAAAAATTAGATAACTTACTAAATAAAGATATTTAAAAATTATAT-AAAAA
*
17328037 TAATTAAATAGTTTTACTTAAAAATAAATTAAAAATATGAAGAGCAAAATTTAAAATATAACATT
260 -AATTAAATAGTTTTACTTAAAAATAAATTAAAAATACGAAGAGCAAAATTTAAAATATAACATT
*
17328102 TTGAAAATTAATTTAAATACGTTATATAAGTTTTGAAA-AAAAATTCAAAAATTT-TTATAACTT
1 TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAATAAAAATTCAAAAATTTATT-TAACTT
*
17328165 ACTAAATAAAGATATTTAAAAATTTATAAAAAAAAATTAATTAGTCTTAATTAAAAATAAATTAA
65 ACTAAATAAAGATATTTAAAAATTTATAAAAAAAAATTAAATAGTCTTAATTAAAAATAAATTAA
17328230 AAATATGAAGAGCAAAATTTAAAATATAACTATTTGAAAATTAATTTAAATAAGTTATATAAGTT
130 AAATATGAAGAGCAAAATTTAAAATATAACTATTTGAAAATTAATTTAAATAAGTTATATAAGTT
*
17328295 TTGAAAAAAAATATCAAAAAATTATATAACTTACTAAATAAAGATATTTAAAAATTATATAAAAA
195 TTGAAAAAAAATATCAAAAAATTAGATAACTTACTAAATAAAGATATTTAAAAATTATATAAAAA
17328360 AATTAAATAGTTTTACTTAAAAATAAATTAAAAATACGAAGAGCAAAATTTAAAATA
260 AATTAAATAGTTTTACTTAAAAATAAATTAAAAATACGAAGAGCAAAATTTAAAATA
17328417 CATTTAAAAA
Statistics
Matches: 291, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
322 58 0.20
323 194 0.67
324 39 0.13
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (323 bp):
TTGAAAATTAATTTAAATAAGTTATATAAGTTTTGAAATAAAAATTCAAAAATTTATTTAACTTA
CTAAATAAAGATATTTAAAAATTTATAAAAAAAAATTAAATAGTCTTAATTAAAAATAAATTAAA
AATATGAAGAGCAAAATTTAAAATATAACTATTTGAAAATTAATTTAAATAAGTTATATAAGTTT
TGAAAAAAAATATCAAAAAATTAGATAACTTACTAAATAAAGATATTTAAAAATTATATAAAAAA
ATTAAATAGTTTTACTTAAAAATAAATTAAAAATACGAAGAGCAAAATTTAAAATATAACATT
Found at i:17330059 original size:56 final size:56
Alignment explanation
Indices: 17329922--17330365 Score: 432
Period size: 56 Copynumber: 7.7 Consensus size: 56
17329912 TTTTGTGCAG
* * * *
17329922 AAAAATTGATACTTTCAATTTTTTCTAAAAATATTTTTTTAGAAATTTTAATCTCGAG
1 AAAAATTGATACTTTCAATTTTTTCTCAAAATA-TTTTTT-GAAAATTTAATTTCGAA
* * * *
17329980 GAAAATTGATACTTTCAACTTTTTCTCAAAATATCTTTTGAAACTTTAATTTCGAA
1 AAAAATTGATACTTTCAATTTTTTCTCAAAATATTTTTTGAAAATTTAATTTCGAA
* * ** *
17330036 AAAAATTGATACTTTCAATTTTTTCTCAAAAAAAACTTTTTTAAAAATTT-ATTTTTATG
1 AAAAATTGATACTTTCAATTTTTTCTC--AAAATA-TTTTTTGAAAATTTAATTTCGA-A
* * *
17330095 AAAAATTGATACTTTTAATTTTTTCTCAAAATATTTTTTAGAAACTTTAATTTTCGAC
1 AAAAATTGATACTTTCAATTTTTTCTCAAAATATTTTTT-GAAAATTTAA-TTTCGAA
* * * * **
17330153 GAAAATTGATACTTTCAATTTTTTTTCAAAAAATTTTTTTTTTTGAAAATTT-TTTTTTAA
1 AAAAATTGATACTTTCAATTTTTTCTC--AAAA---TATTTTTTGAAAATTTAATTTCGAA
17330213 GAAAAATTGATACTTTCAA-TTTTTCTCCAAAATATTTTTTGAAAATTTTAATTTCG-A
1 -AAAAATTGATACTTTCAATTTTTTCT-CAAAATATTTTTTGAAAA-TTTAATTTCGAA
* * **
17330270 GAAAATTGATACTTTCAACTTTTTTCTCAAAA-ATTGTTTTAAAAATTT-ATTTTTAA
1 AAAAATTGATACTTTCAA-TTTTTTCTCAAAATATT-TTTTGAAAATTTAATTTCGAA
*
17330326 AAAAATTGATACTTTCAATTTTTTTTCAAAAATATTTTTT
1 AAAAATTGATACTTTCAATTTTTTCTC-AAAATATTTTTT
17330366 TTATTTTATT
Statistics
Matches: 320, Mismatches: 44, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
55 12 0.04
56 106 0.33
57 36 0.11
58 75 0.23
59 45 0.14
60 14 0.04
61 18 0.06
62 7 0.02
63 7 0.02
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.48
Consensus pattern (56 bp):
AAAAATTGATACTTTCAATTTTTTCTCAAAATATTTTTTGAAAATTTAATTTCGAA
Found at i:17330218 original size:17 final size:17
Alignment explanation
Indices: 17330171--17330220 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
17330161 ATACTTTCAA
*
17330171 TTTTTTTTCA-AAAAAT
1 TTTTTTTTAAGAAAAAT
**
17330187 TTTTTTTTTTG-AAAAT
1 TTTTTTTTAAGAAAAAT
17330203 TTTTTTTTAAGAAAAAT
1 TTTTTTTTAAGAAAAAT
17330220 T
1 T
17330221 GATACTTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 22 0.79
17 6 0.21
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
TTTTTTTTAAGAAAAAT
Found at i:17330406 original size:10 final size:9
Alignment explanation
Indices: 17330376--17330475 Score: 55
Period size: 8 Copynumber: 10.9 Consensus size: 9
17330366 TTATTTTATT
*
17330376 TAAAGAAAA
1 TAAAAAAAA
*
17330385 T-AAAATAA
1 TAAAAAAAA
17330393 TAAAACAAAA
1 TAAAA-AAAA
17330403 TAAAAGTGAAAA
1 TAAAA---AAAA
17330415 TAAAAAAAA
1 TAAAAAAAA
*
17330424 -AGAAAAAA
1 TAAAAAAAA
* *
17330432 -AAGAAAAG
1 TAAAAAAAA
*
17330440 TAAAACAAA
1 TAAAAAAAA
*
17330449 -AATAAAAA
1 TAAAAAAAA
17330457 TAAAATAAAGA
1 TAAAA-AAA-A
17330468 TAAAAAAA
1 TAAAAAAA
17330476 TATTAAATAA
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
8 24 0.35
9 16 0.23
10 14 0.20
11 6 0.09
12 9 0.13
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.12
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:17330432 original size:25 final size:23
Alignment explanation
Indices: 17330381--17330475 Score: 66
Period size: 23 Copynumber: 4.0 Consensus size: 23
17330371 TTATTTAAAG
* *
17330381 AAAATAAAATAATAAAACAAAATAA
1 AAAAGAAAATAA-AAAA-AAAAAAA
**
17330406 AAGTGAAAATAAAAAAAAAGAAAA
1 AAAAGAAAATAAAAAAAAA-AAAA
* *
17330430 AAAAGAAAAGT-AAAACAAAAATA
1 AAAAGAAAA-TAAAAAAAAAAAAA
* * *
17330453 AAAATAAAATAAAGATAAAAAAA
1 AAAAGAAAATAAAAAAAAAAAAA
17330476 TATTAAATAA
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
22 1 0.02
23 23 0.42
24 21 0.38
25 10 0.18
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (23 bp):
AAAAGAAAATAAAAAAAAAAAAA
Found at i:17330444 original size:6 final size:5
Alignment explanation
Indices: 17330381--17330486 Score: 67
Period size: 5 Copynumber: 20.6 Consensus size: 5
17330371 TTATTTAAAG
* * *
17330381 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAA AAAAG AAAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* *
17330430 AAAAG AAAAGT AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAA- AAATAT
1 AAAAT AAAA-T AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAAAT AAA-AT
*
17330479 TAAAT AAA
1 AAAAT AAA
17330487 CCTAATCTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
3 3 0.04
4 7 0.09
5 45 0.56
6 22 0.27
7 4 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:17330460 original size:17 final size:16
Alignment explanation
Indices: 17330381--17330473 Score: 64
Period size: 17 Copynumber: 5.6 Consensus size: 16
17330371 TTATTTAAAG
*
17330381 AAAATAAAATAATAAAAC
1 AAAAT-AAA-AATAAAAA
* *
17330399 AAAATAAAAGTGAAAAT
1 AAAATAAAAAT-AAAAA
*
17330416 AAAA-AAAAA-GAAAA
1 AAAATAAAAATAAAAA
* *
17330430 AAAAGAAAAGTAAAACA
1 AAAATAAAAATAAAA-A
17330447 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAA-A
*
17330464 AAGATAAAAA
1 AAAATAAAAA
17330474 AATATTAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
14 7 0.12
15 4 0.07
16 9 0.15
17 35 0.58
18 5 0.08
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:17330461 original size:11 final size:11
Alignment explanation
Indices: 17330381--17330486 Score: 63
Period size: 11 Copynumber: 9.2 Consensus size: 11
17330371 TTATTTAAAG
17330381 AAAATAAAATAA
1 AAAATAAAAT-A
*
17330393 TAAAACAAAATA
1 -AAAATAAAATA
*
17330405 AAAGTGAAAATAA
1 AAAAT-AAAAT-A
* *
17330418 AAAAAAAGAAAA
1 AAAATAA-AATA
*
17330430 AAAAGAAAAGTA
1 AAAATAAAA-TA
17330442 AAACA-AAAATA
1 AAA-ATAAAATA
17330453 AAAATAAAATA
1 AAAATAAAATA
*
17330464 AAGATAAAA-A
1 AAAATAAAATA
* *
17330474 AATATTAAATA
1 AAAATAAAATA
17330485 AA
1 AA
17330487 CCTAATCTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
10 9 0.12
11 27 0.36
12 23 0.31
13 16 0.21
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:17331386 original size:20 final size:21
Alignment explanation
Indices: 17331325--17331406 Score: 61
Period size: 18 Copynumber: 4.2 Consensus size: 21
17331315 TTTCAGCCGA
*
17331325 ATAAATC-AAAGAAATAA-A-
1 ATAAATCAAAATAAATAACAG
* *
17331343 AAAAATC-AAATAAAT--CAA
1 ATAAATCAAAATAAATAACAG
*
17331361 ATAAATCAAAA-AATTAACAG
1 ATAAATCAAAATAAATAACAG
*
17331381 ATAAATTAAAATTAAATAACAG
1 ATAAATCAAAA-TAAATAACAG
17331403 ATAA
1 ATAA
17331407 TATATAATCT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
17 1 0.02
18 22 0.44
19 3 0.06
20 12 0.24
22 12 0.24
ACGTcount: A:0.68, C:0.07, G:0.04, T:0.21
Consensus pattern (21 bp):
ATAAATCAAAATAAATAACAG
Found at i:17331521 original size:12 final size:11
Alignment explanation
Indices: 17331493--17331596 Score: 55
Period size: 11 Copynumber: 9.7 Consensus size: 11
17331483 AATACCTAAG
17331493 ATAAAAATAA-A
1 ATAAAAA-AATA
*
17331504 AGAAAAAAATA
1 ATAAAAAAATA
*
17331515 TATAAAACAATA
1 -ATAAAAAAATA
17331527 ATAATAAAAATA
1 ATAA-AAAAATA
17331539 A-AAATAAAAT-
1 ATAAA-AAAATA
*
17331549 GTAAAATACAA-A
1 ATAAAA-A-AATA
17331561 AT--AAAAATA
1 ATAAAAAAATA
*
17331570 A-AAATAAA-A
1 ATAAAAAAATA
17331579 ATAAAAAAATA
1 ATAAAAAAATA
17331590 A-AAAAAA
1 ATAAAAAA
17331597 GAAAATAGAC
Statistics
Matches: 72, Mismatches: 8, Indels: 27
0.67 0.07 0.25
Matches are distributed among these distances:
8 2 0.03
9 5 0.07
10 22 0.31
11 24 0.33
12 19 0.26
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (11 bp):
ATAAAAAAATA
Found at i:17331534 original size:37 final size:37
Alignment explanation
Indices: 17331493--17331592 Score: 109
Period size: 37 Copynumber: 2.7 Consensus size: 37
17331483 AATACCTAAG
*
17331493 ATAAAAATAAAAGAAAAAAATATATAAA-AC-AATAATA
1 ATAAAAATAAAA-AAAAAAATATA-AAATACAAATAAAA
* *
17331530 ATAAAAAT-AAAAATAAAATGTAAAATACAAAATAAAA
1 ATAAAAATAAAAAAAAAAATATAAAATAC-AAATAAAA
17331567 ATAAAAATAAAAATAAAAAA-ATAAAA
1 ATAAAAATAAAAA-AAAAAATATAAAA
17331593 AAAAGAAAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
34 3 0.06
35 11 0.21
36 3 0.06
37 22 0.42
38 9 0.17
39 5 0.09
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (37 bp):
ATAAAAATAAAAAAAAAAATATAAAATACAAATAAAA
Found at i:17331601 original size:6 final size:6
Alignment explanation
Indices: 17331493--17331585 Score: 91
Period size: 6 Copynumber: 15.2 Consensus size: 6
17331483 AATACCTAAG
* * * *
17331493 ATAAAA ATAAAA GAAAAAA ATATATA A-AACA ATAATA ATAAAA ATAAAA
1 ATAAAA ATAAAA -ATAAAA ATA-AAA ATAAAA ATAAAA ATAAAA ATAAAA
*
17331542 AT-AAA ATGTAAA ATACAAA ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA AT-AAAA ATA-AAA ATAAAA ATAAAA ATAAAA ATAAAA A
17331586 AATAAAAAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 12
0.80 0.08 0.13
Matches are distributed among these distances:
5 8 0.11
6 47 0.64
7 19 0.26
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:17331870 original size:42 final size:44
Alignment explanation
Indices: 17331773--17331871 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 44
17331763 ATCAAAGCTT
* * * * *
17331773 TTCTAAGCAAAGGCTCAACGACTTTGAGAAACATAAATGGTTCC
1 TTCTAATCAGAGGCTCAAAGACTTTGAGAAAAATAAATGGCTCC
* *
17331817 TT-TAATTAGAGGCTTAAAGACTTTGA-AAAAATAAATGGCT-C
1 TTCTAATCAGAGGCTCAAAGACTTTGAGAAAAATAAATGGCTCC
17331858 TTCTAATCAGAGGC
1 TTCTAATCAGAGGC
17331872 ATCACGATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.07
42 22 0.48
43 19 0.41
44 2 0.04
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (44 bp):
TTCTAATCAGAGGCTCAAAGACTTTGAGAAAAATAAATGGCTCC
Found at i:17331940 original size:41 final size:41
Alignment explanation
Indices: 17331883--17332095 Score: 297
Period size: 41 Copynumber: 5.2 Consensus size: 41
17331873 TCACGATTTT
* * * * *
17331883 AATTGCTCCTCTAAACAGAGACACTATGAATTTGGAAAGTA
1 AATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
*
17331924 AATTGCTTCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
1 AATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
17331965 AATTGCTCCTCTAAACAGAGG---CACGACTTTGAAAAGTA
1 AATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
* **
17332003 AATTACTTTTCTAAACAGAGGCACCACGACTTTGAAAAGTA
1 AATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
* *
17332044 AATTACTCCTCTAAACAGAGGCATCACGACTTTGAAAAAGTA
1 AATTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTA
17332086 AATTGCTCCT
1 AATTGCTCCT
17332096 TAACAATCAT
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 35 0.23
41 103 0.67
42 16 0.10
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (41 bp):
AATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
Found at i:17332021 original size:79 final size:79
Alignment explanation
Indices: 17331883--17332089 Score: 297
Period size: 79 Copynumber: 2.5 Consensus size: 79
17331873 TCACGATTTT
* * * *
17331883 AATTGCTCCTCTAAACAGAGACACTATGAATTTGGAAAGTAAATTGCTTCTCTAAACAGAGGCAC
1 AATTGCTCCTCTAAACAGAGGCAC---GACTTTGAAAAGTAAATTACTTCTCTAAACAGAGGCAC
17331948 CACGACTTTGAAAAGTA
63 CACGACTTTGAAAAGTA
*
17331965 AATTGCTCCTCTAAACAGAGGCACGACTTTGAAAAGTAAATTACTTTTCTAAACAGAGGCACCAC
1 AATTGCTCCTCTAAACAGAGGCACGACTTTGAAAAGTAAATTACTTCTCTAAACAGAGGCACCAC
17332030 GACTTTGAAAAGTA
66 GACTTTGAAAAGTA
*
17332044 AATTACTCCTCTAAACAGAGGCATCACGACTTTGAAAAAGTAAATT
1 AATTGCTCCTCTAAACAGAGG---CACGACTTTG-AAAAGTAAATT
17332090 GCTCCTTAAC
Statistics
Matches: 115, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
79 71 0.62
82 33 0.29
83 11 0.10
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (79 bp):
AATTGCTCCTCTAAACAGAGGCACGACTTTGAAAAGTAAATTACTTCTCTAAACAGAGGCACCAC
GACTTTGAAAAGTA
Found at i:17333113 original size:7 final size:7
Alignment explanation
Indices: 17333103--17333137 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
17333093 TTCATTCATT
17333103 TTTTTTA
1 TTTTTTA
17333110 TTTTTTA
1 TTTTTTA
17333117 TTTTTTA
1 TTTTTTA
17333124 TTTTTTTA
1 -TTTTTTA
17333132 TTTTTT
1 TTTTTT
17333138 TTTAAGCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:17333120 original size:15 final size:14
Alignment explanation
Indices: 17333103--17333137 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
17333093 TTCATTCATT
17333103 TTTTTTATTTTTTA
1 TTTTTTATTTTTTA
17333117 TTTTTTATTTTTTTA
1 TTTTTTA-TTTTTTA
17333132 TTTTTT
1 TTTTTT
17333138 TTTAAGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTATTTTTTA
Found at i:17338037 original size:15 final size:14
Alignment explanation
Indices: 17338013--17338042 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
17338003 TCTTTCTCCT
17338013 TCTTTAGCCTTCTC
1 TCTTTAGCCTTCTC
17338027 TCTTCTAGCCTTCTC
1 TCTT-TAGCCTTCTC
17338042 T
1 T
17338043 AACATTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.37, G:0.07, T:0.50
Consensus pattern (14 bp):
TCTTTAGCCTTCTC
Found at i:17343663 original size:16 final size:16
Alignment explanation
Indices: 17343645--17343682 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
17343635 TTTTTCCTCA
17343645 AAAAATTTTTTTTT-G
1 AAAAATTTTTTTTTAG
17343660 -AAAATTTTTTTTTAGG
1 AAAAATTTTTTTTTA-G
17343676 AAAAATT
1 AAAAATT
17343683 GATACTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 13 0.65
16 1 0.05
17 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
AAAAATTTTTTTTTAG
Found at i:17343669 original size:13 final size:14
Alignment explanation
Indices: 17343646--17343672 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17343636 TTTTCCTCAA
17343646 AAAATTTTTTTTTG
1 AAAATTTTTTTTTG
17343660 AAAATTTTTTTTT
1 AAAATTTTTTTTT
17343673 AGGAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
AAAATTTTTTTTTG
Found at i:17343686 original size:59 final size:58
Alignment explanation
Indices: 17343501--17343949 Score: 431
Period size: 59 Copynumber: 7.8 Consensus size: 58
17343491 GTTTTTGTGC
* * *
17343501 AGGAAAAATTGATACTTTCAACTTTTTCTC--AAAATATTTTTTTAGAAATTTTAATCTTG
1 AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAAATATTTTTTGA-AAATTTT--TTTTT
* * * * **
17343560 AGG-AAAATTGATACTTTTAACTTTTTTTC--AAAATATCTTTTG-AAACTTTAATTT
1 AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAAATATTTTTTGAAAATTTTTTTTT
* * *
17343614 CGAAAAAATTGATACTTTCAA-TTTTTCCTCAAAAAATTTTTTTTTGAAAATTTTTTTTT
1 AGGAAAAATTGATACTTTCAACTTTTT-CTCAAAAAA-TATTTTTTGAAAATTTTTTTTT
* * *
17343673 AGGAAAAATTGATACTTTCAATTTTTTC-CCAAAAATATTTTTTGAAAATTTTGATTTTCA
1 AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAAATATTTTTTGAAAATTTT--TTTT-T
* *
17343733 AGG-AAAATTGATACTTTCAACTTTTTCTTAAAAAAATTTTTTTTGAAAATTTTTTTTT
1 AGGAAAAATTGATACTTTCAACTTTTTC-TCAAAAAATATTTTTTGAAAATTTTTTTTT
* * * **
17343791 AAGAAAAATTGATACTTTCAACTTTTT-TCCAAAAATATTTTTTGAAAACTTTAATTT
1 AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAAATATTTTTTGAAAATTTTTTTTT
* ** *
17343848 CGAGAAAAATTGATACTTTCAAC-TTTTCTTC-AAAAAT-CGTTTT-AAAATTTATTTTT
1 AG-GAAAAATTGATACTTTCAACTTTTTC-TCAAAAAATATTTTTTGAAAATTTTTTTTT
* *
17343904 AAGAAAAATTGATACTTTCAACTTTTTTTCAAAAATATATATTTTT
1 AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAA-ATAT-TTTTT
17343950 TGATTTTATT
Statistics
Matches: 322, Mismatches: 47, Indels: 42
0.78 0.11 0.10
Matches are distributed among these distances:
54 8 0.02
55 40 0.12
56 23 0.07
57 54 0.17
58 76 0.24
59 92 0.29
60 8 0.02
61 21 0.07
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (58 bp):
AGGAAAAATTGATACTTTCAACTTTTTCTCAAAAAATATTTTTTGAAAATTTTTTTTT
Found at i:17343787 original size:12 final size:13
Alignment explanation
Indices: 17343765--17343789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17343755 TTTTCTTAAA
17343765 AAAATTTTTTTTG
1 AAAATTTTTTTTG
17343778 AAAATTTTTTTT
1 AAAATTTTTTTT
17343790 TAAGAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
AAAATTTTTTTTG
Found at i:17343796 original size:16 final size:16
Alignment explanation
Indices: 17343754--17343800 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 16
17343744 TACTTTCAAC
*
17343754 TTTTTCTTAA-AAAAA
1 TTTTTTTTAAGAAAAA
*
17343769 TTTTTTTT--GAAAAT
1 TTTTTTTTAAGAAAAA
17343783 TTTTTTTTAAGAAAAA
1 TTTTTTTTAAGAAAAA
17343799 TT
1 TT
17343801 GATACTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 12 0.46
15 7 0.27
16 7 0.27
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (16 bp):
TTTTTTTTAAGAAAAA
Found at i:17343973 original size:5 final size:5
Alignment explanation
Indices: 17343965--17344051 Score: 70
Period size: 5 Copynumber: 16.6 Consensus size: 5
17343955 TTATTTAAAG
* *
17343965 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAAAT AAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT --AAAAT AAAAT
* *
17344012 AAAAT AAAAAT AAAAT AAAGAT AAAAT AATAT TAAAT AAA
1 AAAAT -AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAA
17344052 CTTAATCTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
3 3 0.05
5 42 0.64
6 12 0.18
7 9 0.14
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:17344004 original size:23 final size:23
Alignment explanation
Indices: 17343966--17344026 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
17343956 TATTTAAAGA
*
17343966 AAAT-AAAATAATAAAACAAAATAA
1 AAATAAAAATAA-AAAATAAAA-AA
* *
17343990 AAGTGAAAATAAAAAATAAAAAA
1 AAATAAAAATAAAAAATAAAAAA
17344013 AAATAAAAATAAAA
1 AAATAAAAATAAAA
17344027 TAAAGATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 14 0.44
24 11 0.34
25 7 0.22
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (23 bp):
AAATAAAAATAAAAAATAAAAAA
Found at i:17344010 original size:6 final size:6
Alignment explanation
Indices: 17343965--17344037 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
17343955 TTATTTAAAG
* *
17343965 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAATA AAAA-A TAAAA-A
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA -AAAATA
*
17344012 AAAATA AAAAT- AAAATA AAGATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
17344038 TAATATTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
5 15 0.27
6 35 0.64
7 5 0.09
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:17344015 original size:17 final size:18
Alignment explanation
Indices: 17343965--17344042 Score: 81
Period size: 19 Copynumber: 4.3 Consensus size: 18
17343955 TTATTTAAAG
*
17343965 AAAATAAAATAATAAA-AC
1 AAAATAAAATAA-AAATAA
*
17343983 AAAATAAAAGTGAAAATAA
1 AAAATAAAA-TAAAAATAA
17344002 AAAATAAAA-AAAAAT-A
1 AAAATAAAATAAAAATAA
*
17344018 AAAATAAAATAAAGATAA
1 AAAATAAAATAAAAATAA
17344036 AATAATA
1 AA-AATA
17344043 TTAAATAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
16 10 0.20
17 10 0.20
18 15 0.29
19 16 0.31
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (18 bp):
AAAATAAAATAAAAATAA
Found at i:17344015 original size:29 final size:30
Alignment explanation
Indices: 17343964--17344035 Score: 103
Period size: 29 Copynumber: 2.4 Consensus size: 30
17343954 TTTATTTAAA
* *
17343964 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAATAATAAAAAAAAATAAAAAT
17343994 GAAAATAAAA-AATAAAAAAAAATAAAAAT
1 GAAAATAAAATAATAAAAAAAAATAAAAAT
17344023 -AAAATAAAGATAA
1 GAAAATAAA-ATAA
17344036 AATAATATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 8 0.21
29 18 0.47
30 12 0.32
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (30 bp):
GAAAATAAAATAATAAAAAAAAATAAAAAT
Found at i:17344021 original size:11 final size:11
Alignment explanation
Indices: 17343965--17344040 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 11
17343955 TTATTTAAAG
17343965 AAAATAAAATAA
1 AAAATAAAA-AA
* *
17343977 TAAAACAAAATA
1 -AAAATAAAAAA
*
17343989 AAAGTGAAAATAA
1 AAAAT-AAAA-AA
17344002 AAAAT-AAAAA
1 AAAATAAAAAA
*
17344012 AAAATAAAAAT
1 AAAATAAAAAA
* *
17344023 AAAATAAAGAT
1 AAAATAAAAAA
17344034 AAAATAA
1 AAAATAA
17344041 TATTAAATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
10 7 0.13
11 27 0.52
12 5 0.10
13 13 0.25
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAA
Found at i:17344040 original size:16 final size:16
Alignment explanation
Indices: 17343995--17344037 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
17343985 AATAAAAGTG
17343995 AAAATAAAAAATAAAAA
1 AAAAT-AAAAATAAAAA
17344012 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAA-A
*
17344029 AAGATAAAA
1 AAAATAAAA
17344038 TAATATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:17344070 original size:4 final size:4
Alignment explanation
Indices: 17343996--17344093 Score: 66
Period size: 4 Copynumber: 25.0 Consensus size: 4
17343986 ATAAAAGTGA
* *
17343996 AAAT AAA- AAAT AAA- AAA- AAAT -AA- AAAT AAAAT AAAG ATA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT
* *
17344039 AATATT AAAT AAACT TAAT CTAAT -AAT AAAT AAAT AAAT AAAT AAAT
1 AA-A-T AAAT AAA-T AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT
17344086 AAAT AAAT
1 AAAT AAAT
17344094 GAAAACAAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 22
0.75 0.04 0.21
Matches are distributed among these distances:
3 18 0.23
4 45 0.57
5 13 0.16
6 3 0.04
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:17344901 original size:9 final size:9
Alignment explanation
Indices: 17344876--17344922 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
17344866 TCAGCTGAAT
*
17344876 AAATCAAAG
1 AAATCAAAA
17344885 AAAT-AAAA
1 AAATCAAAA
17344893 AAATCAAAA
1 AAATCAAAA
* *
17344902 AAATCAGAT
1 AAATCAAAA
17344911 AAAT-AAAA
1 AAATCAAAA
17344919 AAAT
1 AAAT
17344923 TAACAGATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
8 13 0.41
9 19 0.59
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (9 bp):
AAATCAAAA
Found at i:17344929 original size:20 final size:21
Alignment explanation
Indices: 17344906--17344954 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
17344896 TCAAAAAAAT
17344906 CAGATAAA-TAAAA-AAATTAA
1 CAGATAAATTAAAATAAA-TAA
17344926 CAGATAAATTAAAATTAAATAA
1 CAGATAAATTAAAA-TAAATAA
17344948 CAGATAA
1 CAGATAA
17344955 TATATAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.31
21 5 0.19
22 10 0.38
23 3 0.12
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.22
Consensus pattern (21 bp):
CAGATAAATTAAAATAAATAA
Found at i:17345088 original size:6 final size:6
Alignment explanation
Indices: 17345079--17345139 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
17345069 CAATATTAAT
* * *
17345079 AATAAA AATAAA AAT-GA AATAAA AATAAA TATAAA AATGTAA AATACAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AAT-AAA AATA-AA
17345128 AA-AAA AA-AAA AA
1 AATAAA AATAAA AA
17345140 GACTTACCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
5 13 0.28
6 24 0.52
7 9 0.20
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:17345100 original size:11 final size:11
Alignment explanation
Indices: 17345084--17345117 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
17345074 TTAATAATAA
17345084 AAATAAAAATG
1 AAATAAAAATG
*
17345095 AAATAAAAATA
1 AAATAAAAATG
17345106 AATATAAAAATG
1 AA-ATAAAAATG
17345118 TAAAATACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
AAATAAAAATG
Found at i:17346526 original size:5 final size:5
Alignment explanation
Indices: 17346512--17346559 Score: 69
Period size: 5 Copynumber: 9.6 Consensus size: 5
17346502 AAATATTAAT
* * *
17346512 AAAGG AAATG AAATG AAATG AAAGG AAAGG AAAGG AAAGG AAAGG AAA
1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAA
17346560 ATAAAGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.06
Consensus pattern (5 bp):
AAAGG
Found at i:17346565 original size:15 final size:15
Alignment explanation
Indices: 17346527--17346565 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
17346517 AAATGAAATG
17346527 AAATGAAAGGAAAGGA
1 AAAT-AAAGGAAAGGA
**
17346543 AAGGAAAGGAAAGGA
1 AAATAAAGGAAAGGA
17346558 AAATAAAG
1 AAATAAAG
17346566 TTTTTTAAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (15 bp):
AAATAAAGGAAAGGA
Found at i:17347488 original size:15 final size:15
Alignment explanation
Indices: 17347468--17347498 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17347458 AAAAATAAAA
17347468 TTTTTTTAACTTTTC
1 TTTTTTTAACTTTTC
*
17347483 TTTTTTTAGCTTTTC
1 TTTTTTTAACTTTTC
17347498 T
1 T
17347499 CTCAAATTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTTTTAACTTTTC
Found at i:17351402 original size:19 final size:20
Alignment explanation
Indices: 17351378--17351415 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
17351368 GGAGAAGTAA
17351378 GGTTTAATTAA-TTTAATTT
1 GGTTTAATTAACTTTAATTT
17351397 GGTTTAATTAACTTTAATT
1 GGTTTAATTAACTTTAATT
17351416 GTTTTCTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.55
Consensus pattern (20 bp):
GGTTTAATTAACTTTAATTT
Found at i:17352939 original size:15 final size:15
Alignment explanation
Indices: 17352917--17352951 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
17352907 TAAAATTATC
17352917 AAAA-TTTAAATATT
1 AAAATTTTAAATATT
*
17352931 AAAATTTTAATTATT
1 AAAATTTTAAATATT
17352946 AAAATT
1 AAAATT
17352952 ATGACTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AAAATTTTAAATATT
Found at i:17354793 original size:14 final size:15
Alignment explanation
Indices: 17354776--17354818 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
17354766 TTTATTATAT
17354776 ATAAT-TAATTATTA
1 ATAATATAATTATTA
*
17354790 ATAATATCA-TATTA
1 ATAATATAATTATTA
*
17354804 ATAATATTATTATTA
1 ATAATATAATTATTA
17354819 TCATTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
ATAATATAATTATTA
Found at i:17354867 original size:33 final size:34
Alignment explanation
Indices: 17354786--17354887 Score: 84
Period size: 33 Copynumber: 2.9 Consensus size: 34
17354776 ATAATTAATT
* *
17354786 ATTAATAATATCATATTAATAATATTATTATTATCA
1 ATTAAT-ATATCA-ATTAATAATATTATAATTATAA
*
17354822 TTTAAT-TAATCAATT-ATAATATTAATAATT-TAA
1 ATTAATAT-ATCAATTAATAATATT-ATAATTATAA
* *
17354855 ATTAATATATCAAAATTAATATTATTTTAATTA
1 ATTAATATATC--AATTAATAATATTATAATTA
17354888 GCATAAATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
33 18 0.34
34 10 0.19
35 13 0.25
36 12 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (34 bp):
ATTAATATATCAATTAATAATATTATAATTATAA
Found at i:17354998 original size:5 final size:5
Alignment explanation
Indices: 17354990--17355014 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
17354980 CCATTCAACT
17354990 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
17355015 TTCAAATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:17355765 original size:18 final size:19
Alignment explanation
Indices: 17355742--17355782 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
17355732 AAATTTAATG
17355742 TTTTAAAAAACTAAAA-AA
1 TTTTAAAAAACTAAAATAA
**
17355760 TTTTAAAAATTTAAAATAA
1 TTTTAAAAAACTAAAATAA
17355779 TTTT
1 TTTT
17355783 TGTATTAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTTAAAAAACTAAAATAA
Found at i:17355851 original size:21 final size:21
Alignment explanation
Indices: 17355823--17355864 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
17355813 TGAGCATAAG
17355823 AACTA-TTTATATAAT-TTAAT
1 AACTATTTTAT-TAATCTTAAT
17355843 AACTGATTTTATTAATCTTAAT
1 AACT-ATTTTATTAATCTTAAT
17355865 TATTATATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.21
21 5 0.26
22 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.50
Consensus pattern (21 bp):
AACTATTTTATTAATCTTAAT
Found at i:17363736 original size:23 final size:23
Alignment explanation
Indices: 17363710--17363755 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
17363700 TCCACATTCT
*
17363710 TTGTTCTCTTCTGCGAATTAATA
1 TTGTTATCTTCTGCGAATTAATA
17363733 TTGTTATCTTCTGCGAATTAATA
1 TTGTTATCTTCTGCGAATTAATA
17363756 GTCAGAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.48
Consensus pattern (23 bp):
TTGTTATCTTCTGCGAATTAATA
Found at i:17365039 original size:43 final size:43
Alignment explanation
Indices: 17364992--17365135 Score: 130
Period size: 47 Copynumber: 3.1 Consensus size: 43
17364982 TATAAAAATT
17364992 ATATTAATTATAATTTATGTTGATATATTAAATTTATTATATA
1 ATATTAATTATAATTTATGTTGATATATTAAATTTATTATATA
* * **
17365035 ATATTATTAATATAAATTTAAT-TAT-ATCATTTTTTATATTATTATCTTATTA
1 ATATTA--ATTAT-AATTT-ATGT-TGAT-ATATTAAAT-TTATTA---TA-TA
*
17365087 ATATTAATTATAATTTGTGTTGATATATTAAATTTATTATATA
1 ATATTAATTATAATTTATGTTGATATATTAAATTTATTATATA
17365130 ATATTA
1 ATATTA
17365136 TTAATATAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 26
0.69 0.08 0.23
Matches are distributed among these distances:
43 14 0.18
44 2 0.03
45 4 0.05
46 8 0.10
47 15 0.19
48 14 0.18
49 8 0.10
50 4 0.05
51 2 0.03
52 8 0.10
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (43 bp):
ATATTAATTATAATTTATGTTGATATATTAAATTTATTATATA
Found at i:17365061 original size:14 final size:13
Alignment explanation
Indices: 17365015--17365156 Score: 53
Period size: 14 Copynumber: 10.4 Consensus size: 13
17365005 TTTATGTTGA
17365015 TATATTAAATTTAT
1 TATA-TAAATTTAT
17365029 TATAT-AATATTAT
1 TATATAAAT-TTAT
17365042 TAATATAAATTTAAT
1 T-ATATAAATTT-AT
* *
17365057 TATAT-CATTTTT
1 TATATAAATTTAT
* *
17365069 TATAT-TATTATCT
1 TATATAAATT-TAT
*
17365082 TAT-TAATATTAAT
1 TATATAA-ATTTAT
***
17365095 TATAATTTGTGTTGA-
1 TAT-ATAAAT-TT-AT
17365110 TATATTAAATTTAT
1 TATA-TAAATTTAT
17365124 TATAT-AATATTAT
1 TATATAAAT-TTAT
17365137 TAATATAAATTTAAT
1 T-ATATAAATTT-AT
17365152 TATAT
1 TATAT
17365157 CATTTTTTAT
Statistics
Matches: 97, Mismatches: 14, Indels: 34
0.67 0.10 0.23
Matches are distributed among these distances:
12 16 0.16
13 26 0.27
14 35 0.36
15 19 0.20
16 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (13 bp):
TATATAAATTTAT
Found at i:17365091 original size:95 final size:96
Alignment explanation
Indices: 17364991--17365200 Score: 345
Period size: 95 Copynumber: 2.2 Consensus size: 96
17364981 ATATAAAAAT
17364991 TATATTAATTATAATTTATGTTGATATATTAAATTTATTATATAATATTATTAATATAAATTTAA
1 TATATTAATTATAATTTATGTTGATATATTAAATTTATTATATAATATTATTAATATAAATTTAA
17365056 TTATATCATTTTTTATATTATTA-TCTTATTA
66 TTATATCATTTTTTAT-TTATTATTCTTATTA
*
17365087 -ATATTAATTATAATTTGTGTTGATATATTAAATTTATTATATAATATTATTAATATAAATTTAA
1 TATATTAATTATAATTTATGTTGATATATTAAATTTATTATATAATATTATTAATATAAATTTAA
*
17365151 TTATATCATTTTTTATTTTTTATTTCTTATTA
66 TTATATCATTTTTTATTTATTA-TTCTTATTA
*
17365183 TATATCATATTAT-ATTTA
1 TATATTA-ATTATAATTTA
17365201 CAATTAACAA
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
94 5 0.05
95 79 0.75
96 8 0.08
97 9 0.08
98 5 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (96 bp):
TATATTAATTATAATTTATGTTGATATATTAAATTTATTATATAATATTATTAATATAAATTTAA
TTATATCATTTTTTATTTATTATTCTTATTA
Found at i:17365166 original size:43 final size:43
Alignment explanation
Indices: 17365024--17365167 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
17365014 ATATATTAAA
17365024 TTTATTATATAATATTATTAATATAAATTTAATTATATCATTT
1 TTTATTATATAATATTATTAATATAAATTTAATTATATCATTT
* * * *
17365067 TTTA-TATTATTATCTTATTAATATTAATTATAATTTGTGTTGATAT-ATTAAA
1 TTTATTA-TATAATATTATTAATATAAATT-TAA------TT-ATATCATT--T
17365119 TTTATTATATAATATTATTAATATAAATTTAATTATATCATTT
1 TTTATTATATAATATTATTAATATAAATTTAATTATATCATTT
17365162 TTTATT
1 TTTATT
17365168 TTTTATTTCT
Statistics
Matches: 80, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
42 2 0.03
43 29 0.36
44 7 0.09
45 5 0.06
50 5 0.06
51 7 0.09
52 23 0.29
53 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (43 bp):
TTTATTATATAATATTATTAATATAAATTTAATTATATCATTT
Found at i:17365469 original size:14 final size:14
Alignment explanation
Indices: 17365428--17365470 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
17365418 TTTATTAAGA
*
17365428 TTATTTTAAA-AAT
1 TTATTTTAAATTAT
*
17365441 ATATTTTATAATTAT
1 TTATTTTA-AATTAT
17365456 TTATTTTAAATTAT
1 TTATTTTAAATTAT
17365470 T
1 T
17365471 AGATATGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 7 0.28
14 9 0.36
15 9 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATTTTAAATTAT
Found at i:17366733 original size:113 final size:111
Alignment explanation
Indices: 17366606--17366832 Score: 255
Period size: 112 Copynumber: 2.0 Consensus size: 111
17366596 TTTTATGTTT
* ** ** *
17366606 TATTTTTTTATATTTTCAACAAAAAACTATGTTTTTATCTTATA-AGTA-TCGTATTTTCAACAA
1 TATTTTTTCATATTTGAAACAAAAAACTATGTTTTTAT-TTA-ACAAAAGTCATATTTTCAACAA
* * *
17366669 AGACTATAT-TTTTTATC-TTATAAATGTCATTTTATTGAATTCTGAAAAA
64 AGA-T-TATGTTTTTATCTTTA-AAATGTCATATTATTAAATTCTAAAAAA
* * * *
17366718 TATTTTTTACATATTTGAAATAAAAGACTTTGTTTTTATTTAACAAAAGTCATCTTTTCAACAAA
1 TATTTTTT-CATATTTGAAACAAAAAACTATGTTTTTATTTAACAAAAGTCATATTTTCAACAAA
17366783 GATTATGTTTTTATCTTTAAAATGTCATATTATTAAATTCTAAAAAA
65 GATTATGTTTTTATCTTTAAAATGTCATATTATTAAATTCTAAAAAA
17366830 TAT
1 TAT
17366833 ACTTTCCATA
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
111 4 0.04
112 50 0.52
113 43 0.44
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.47
Consensus pattern (111 bp):
TATTTTTTCATATTTGAAACAAAAAACTATGTTTTTATTTAACAAAAGTCATATTTTCAACAAAG
ATTATGTTTTTATCTTTAAAATGTCATATTATTAAATTCTAAAAAA
Found at i:17366978 original size:113 final size:113
Alignment explanation
Indices: 17366812--17367193 Score: 285
Period size: 113 Copynumber: 3.4 Consensus size: 113
17366802 AAATGTCATA
* * * * * * *
17366812 TTATTAAATTCTAAAAAATATACTTTCCATACTTTCAA-TAAAGATTGCATTTTTATCTTAGAAA
1 TTATTAAATTCTAAAAAATAAATTTTTCATATTTTCAACAAAAG-TTACGTTTTTATCTTAGAAA
* * * * *
17366876 TGTTGTTTTTTTCAATAAAGAGTGCTTGTTTATCTTAAAAACT-TTGTCT
65 TATTATTTTTTTCAATAAAAACTGCTTATTTATCTTAAAAA-TGTTGTCT
* ** * *
17366925 TTATTAAATTCTAAAAATTATTTTTTTTATATTTTCAACAAAAGTTACGTTTTTATCTTTGAAAC
1 TTATTAAATTCTAAAAAATAAATTTTTCATATTTTCAACAAAAGTTACGTTTTTATCTTAGAAA-
* * * * * * * *
17366990 T-TCA-TCTTTTCAACAAATATTGCTTTTTTATCTTTAAAATGTTGTTTTTT
65 TATTATTTTTTTCAATAAAAACTGCTTATTTATCTTAAAAATGTTG---TCT
* * * *
17367040 TTTTTAAATTCTAAAAAATAAATTTTTCATATTTTTAATAAAA-CTACGTTTTTATCTTAGAAAT
1 TTATTAAATTCTAAAAAATAAATTTTTCATATTTTCAACAAAAGTTACGTTTTTATCTTAGAAAT
* * *** *
17367104 ATAATTTTTTT-AATAAAAACTG-TATATTTTTGGGAAAAATGTTATCT
66 ATTATTTTTTTCAATAAAAACTGCT-TATTTATCTTAAAAATGTTGTCT
* * * *
17367151 TTGTTAAATTC-AAAAAATTAATTTTTTTATATTTTAAACAAAA
1 TTATTAAATTCTAAAAAA-TAAATTTTTCATATTTTCAACAAAA
17367194 ATCACATTTT
Statistics
Matches: 213, Mismatches: 46, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
110 6 0.03
111 34 0.16
112 32 0.15
113 52 0.24
114 46 0.22
115 43 0.20
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (113 bp):
TTATTAAATTCTAAAAAATAAATTTTTCATATTTTCAACAAAAGTTACGTTTTTATCTTAGAAAT
ATTATTTTTTTCAATAAAAACTGCTTATTTATCTTAAAAATGTTGTCT
Found at i:17367022 original size:112 final size:111
Alignment explanation
Indices: 17366767--17367103 Score: 315
Period size: 112 Copynumber: 3.0 Consensus size: 111
17366757 TTAACAAAAG
*
17366767 TCATCTTTTCAACAAAGATT-ATGTTTTTATCTTTAAAA--TGTCATATTATTAAATTCTAAAAA
1 TCATCTTTTCAACAAAGATTGCT-TTTTTATCTTTAAAATTTGTC-T-TTATTAAATTCTAAAAA
* * * * * * *
17366829 ATATACTTTCCATACTTTCAATAAAGATTGCATTTTTATCTTAGAAATGT
63 ATATATTTTTCATATTTTCAAAAAAG-TTACGTTTTTATCTTAGAAATCT
** * * * * * *
17366879 TGTTTTTTTCAATAAAGAGTGCTTGTTTATCTTAAAAACTTTGTCTTTATTAAATTCTAAAAATT
1 TCATCTTTTCAACAAAGATTGCTTTTTTATCTTTAAAA-TTTGTCTTTATTAAATTCTAAAAAAT
* * *
17366944 ATTTTTTTTATATTTTCAACAAAAGTTACGTTTTTATCTTTGAAA-CT
65 ATATTTTTCATATTTTCAA-AAAAGTTACGTTTTTATCTTAGAAATCT
* * *
17366991 TCATCTTTTCAACAAATATTGCTTTTTTATCTTTAAAATGTTGTTTTTTTTTTTAAATTCTAAAA
1 TCATCTTTTCAACAAAGATTGCTTTTTTATCTTTAAAAT-TTG---TCTTTATTAAATTCTAAAA
* * *
17367056 AATAAATTTTTCATATTTTTAATAAAA-CTACGTTTTTATCTTAGAAAT
62 AATATATTTTTCATATTTTCAA-AAAAGTTACGTTTTTATCTTAGAAAT
17367104 ATAATTTTTT
Statistics
Matches: 178, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
111 1 0.01
112 62 0.35
113 50 0.28
114 23 0.13
115 42 0.24
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (111 bp):
TCATCTTTTCAACAAAGATTGCTTTTTTATCTTTAAAATTTGTCTTTATTAAATTCTAAAAAATA
TATTTTTCATATTTTCAAAAAAGTTACGTTTTTATCTTAGAAATCT
Found at i:17367029 original size:22 final size:20
Alignment explanation
Indices: 17367004--17367047 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
17366994 TCTTTTCAAC
17367004 AAATATTGCTTTTTTATCTTTA
1 AAATATTG-TTTTTT-TCTTTA
* *
17367026 AAATGTTGTTTTTTTTTTTA
1 AAATATTGTTTTTTTCTTTA
17367046 AA
1 AA
17367048 TTCTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 6 0.30
22 7 0.35
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (20 bp):
AAATATTGTTTTTTTCTTTA
Found at i:17367826 original size:42 final size:41
Alignment explanation
Indices: 17367731--17367829 Score: 139
Period size: 41 Copynumber: 2.4 Consensus size: 41
17367721 TGGCATGAAG
*
17367731 AAATGCCTTAATTGCTCATCAATTAAGATATTTTCTTCATC
1 AAATGCCTTAATTGATCATCAATTAAGATATTTTCTTCATC
*
17367772 AAATGCCTTAATTGATCATCAATTAA-AT-TGTTTCTTCACCTT
1 AAATGCCTTAATTGATCATCAATTAAGATAT-TTTCTTCA--TC
17367814 AAATGCCTTAATTGAT
1 AAATGCCTTAATTGAT
17367830 AATTTTATGA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
39 1 0.02
40 10 0.19
41 25 0.47
42 17 0.32
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.41
Consensus pattern (41 bp):
AAATGCCTTAATTGATCATCAATTAAGATATTTTCTTCATC
Found at i:17374721 original size:51 final size:50
Alignment explanation
Indices: 17374615--17374749 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 50
17374605 GTTGAAGGAT
* **
17374615 TTTTGGGATTTAATTCCAGAATCAATT-GGATTAAAATGACATGGAAAGA
1 TTTTGGGATTTAATTCTAGAATCAATTCACATTAAAATGACATGGAAAGA
* ** **
17374664 TATTTGGGATTTAATTCTAGAATTAATTCACATTAAAATGATGTTTAAAGA
1 T-TTTGGGATTTAATTCTAGAATCAATTCACATTAAAATGACATGGAAAGA
*
17374715 CTTTTGGGATTTAATTCTAGAATCAATTCATATTA
1 -TTTTGGGATTTAATTCTAGAATCAATTCACATTA
17374750 TGATGAAATT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 24 0.33
51 47 0.64
52 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (50 bp):
TTTTGGGATTTAATTCTAGAATCAATTCACATTAAAATGACATGGAAAGA
Found at i:17378144 original size:9 final size:9
Alignment explanation
Indices: 17378130--17378160 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
17378120 AGAGGTGTGC
17378130 AAAAAAA-A
1 AAAAAAATA
17378138 AAAAAAATA
1 AAAAAAATA
17378147 AAAAAAATA
1 AAAAAAATA
17378156 AAAAA
1 AAAAA
17378161 GAGAAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (9 bp):
AAAAAAATA
Found at i:17378167 original size:16 final size:16
Alignment explanation
Indices: 17378130--17378169 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
17378120 AGAGGTGTGC
*
17378130 AAAAAAAAAAAAAAAT
1 AAAAAAAAAAAAAAAG
*
17378146 AAAAAAAATAAAAAAG
1 AAAAAAAAAAAAAAAG
17378162 AGAAAAAA
1 A-AAAAAA
17378170 CGAAGACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.90, C:0.00, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:17379219 original size:29 final size:29
Alignment explanation
Indices: 17379181--17379264 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
17379171 TCGCTTAATC
*
17379181 TTGGCTCAATCTAGATCATT-TTTTGACT-
1 TTGGTTCAATCTAGATCATTGTTTTGA-TG
17379209 TGTGGTTCAATCTCA-ATCATTTGTTTTGATG
1 T-TGGTTCAATCT-AGATCA-TTGTTTTGATG
* *
17379240 TTGGTTCAGTCCAGATCATTGTTTT
1 TTGGTTCAATCTAGATCATTGTTTT
17379265 AGCCCATAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.02
29 22 0.47
30 17 0.36
31 7 0.15
ACGTcount: A:0.19, C:0.15, G:0.18, T:0.48
Consensus pattern (29 bp):
TTGGTTCAATCTAGATCATTGTTTTGATG
Found at i:17379438 original size:34 final size:34
Alignment explanation
Indices: 17379376--17379482 Score: 119
Period size: 34 Copynumber: 3.1 Consensus size: 34
17379366 TGCAAATTTG
* * *
17379376 GAAGTCCTTATGAACCTAAAATTTTTGTGAATCTA
1 GAAGTCCTTACGAACTTGAAA-TTTTGTGAATCTA
* *
17379411 GAATTTC-TACGAAACTTGAAATTTTGTGAATCT-
1 GAAGTCCTTACG-AACTTGAAATTTTGTGAATCTA
17379444 GAAAGTCCTTACGAACTTGAAATATTTGTGAATCTA
1 G-AAGTCCTTACGAACTTGAAAT-TTTGTGAATCTA
17379480 GAA
1 GAA
17379483 CCTTTGCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
33 1 0.02
34 29 0.48
35 29 0.48
36 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (34 bp):
GAAGTCCTTACGAACTTGAAATTTTGTGAATCTA
Found at i:17379495 original size:69 final size:69
Alignment explanation
Indices: 17379363--17379573 Score: 219
Period size: 69 Copynumber: 3.1 Consensus size: 69
17379353 AATATTTCAT
* * * * * *
17379363 TCTTGCAAATTTGGAAGTCCTTATGAACCTAAAATTTTTGTGAATCTAGAATTTCTACGAAACTT
1 TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATATTTGTGAATCTAGAACTTCTACAAAACTT
17379428 GAAA
66 GAAA
* *** * * * *
17379432 TTTTGTGAATCTGAAAGTCCTTACGAACTTGAAATATTTGTGAATCTAGAACCTT-TGCAAAACT
1 TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATATTTGTGAATCTAGAA-CTTCTACAAAACT
17379496 TGAAA
65 TGAAA
* * * **
17379501 TCTTACAAATCTGAAAGTCCTTGTGAACCTAAAATCTTTGTGAATCTAGAA-TCTCAATGAAACT
1 TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATATTTGTGAATCTAGAACT-TCTACAAAACT
17379565 TGAAA
65 TGAAA
17379570 TCTT
1 TCTT
17379574 GTGAATATTT
Statistics
Matches: 114, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
67 1 0.01
68 1 0.01
69 110 0.96
70 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (69 bp):
TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATATTTGTGAATCTAGAACTTCTACAAAACTT
GAAA
Found at i:17379496 original size:35 final size:33
Alignment explanation
Indices: 17379398--17379501 Score: 97
Period size: 34 Copynumber: 3.0 Consensus size: 33
17379388 AACCTAAAAT
*
17379398 TTTTGTGAATCTAGAA-TTTCTACGAAACTTGAAA
1 TTTTGTGAATCTAGAACCTT-TAC-AAACTTGAAA
*
17379432 TTTTGTGAATCT-GAAAGTCC-TTACGAACTTGAAA
1 TTTTGTGAATCTAG-AA--CCTTTACAAACTTGAAA
*
17379466 TATTTGTGAATCTAGAACCTTTGCAAAACTTGAAA
1 T-TTTGTGAATCTAGAACCTTTAC-AAACTTGAAA
17379501 T
1 T
17379502 CTTACAAATC
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
33 3 0.05
34 27 0.47
35 26 0.45
36 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (33 bp):
TTTTGTGAATCTAGAACCTTTACAAACTTGAAA
Found at i:17379543 original size:17 final size:17
Alignment explanation
Indices: 17379521--17379554 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17379511 CTGAAAGTCC
17379521 TTGTGAACCTAAAATCT
1 TTGTGAACCTAAAATCT
* *
17379538 TTGTGAATCTAGAATCT
1 TTGTGAACCTAAAATCT
17379555 CAATGAAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (17 bp):
TTGTGAACCTAAAATCT
Found at i:17379616 original size:138 final size:138
Alignment explanation
Indices: 17379363--17379625 Score: 339
Period size: 138 Copynumber: 1.9 Consensus size: 138
17379353 AATATTTCAT
* * * * * *
17379363 TCTTGCAAATTTGGAAGTCCTTATGAACCTAAAATTTTTGTGAATCTAGAATTTCTACGAAACTT
1 TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATCTTTGTGAATCTAGAATCTCAACGAAACTT
* * ** *
17379428 GAAATTTTGTGAATCTGAAAGTCCTTACGAACTTGAAATATTTGTGAATCTAGAACCTTTGCAAA
66 GAAATCTTGTGAATATGAAAGTCCTTACGAACTAAAAACATTTGTGAATCTAGAACCTTTGCAAA
17379493 ACTTGAAA
131 ACTTGAAA
* *
17379501 TCTTACAAATCTGAAAGTCCTTGTGAACCTAAAATCTTTGTGAATCTAGAATCTCAATGAAACTT
1 TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATCTTTGTGAATCTAGAATCTCAACGAAACTT
*** * * *
17379566 GAAATCTTGTGAATATTTCA-TTCTTATGAATCTAAAAACATTTGTGAATCTTGAACCTTT
66 GAAATCTTGTGAATATGAAAGTCCTTACGAA-CTAAAAACATTTGTGAATCTAGAACCTTT
17379626 ACGATTTTGT
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
137 8 0.08
138 97 0.92
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (138 bp):
TCTTACAAATCTGAAAGTCCTTATGAACCTAAAATCTTTGTGAATCTAGAATCTCAACGAAACTT
GAAATCTTGTGAATATGAAAGTCCTTACGAACTAAAAACATTTGTGAATCTAGAACCTTTGCAAA
ACTTGAAA
Found at i:17380177 original size:51 final size:51
Alignment explanation
Indices: 17380088--17380226 Score: 156
Period size: 51 Copynumber: 2.7 Consensus size: 51
17380078 GTAATTAAAG
* * **
17380088 GATTTTTGGGATTTAATTCCAGAATCAATTGGCATTAAAAATGATG-TGAAAA
1 GATTTTTGAGATTTAATTCCAGAATTAATTCACATT-AAAATGATGTTG-AAA
* * *
17380140 GA-TTTTGAGATTTAATTCCATAATTAATTCACGTTAAAATGATGTTGAGA
1 GATTTTTGAGATTTAATTCCAGAATTAATTCACATTAAAATGATGTTGAAA
* * *
17380190 GATTTTTAAGATTTAATTTCAGAATTAATTCATATTA
1 GATTTTTGAGATTTAATTCCAGAATTAATTCACATTA
17380227 TGATGAAATC
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
50 13 0.18
51 58 0.79
52 2 0.03
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.40
Consensus pattern (51 bp):
GATTTTTGAGATTTAATTCCAGAATTAATTCACATTAAAATGATGTTGAAA
Found at i:17380797 original size:25 final size:23
Alignment explanation
Indices: 17380735--17380798 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
17380725 TTTTGACTTC
* *
17380735 ATTTTTCTTATTTAATTTATGTT
1 ATTTTTCTTATTTTATTTATCTT
17380758 ATTTTGT-TTATTTTTATTTACTCTT
1 ATTTT-TCTTA-TTTTATTTA-TCTT
17380783 ATTATTTCTTATTTTA
1 ATT-TTTCTTATTTTA
17380799 AATTGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
23 8 0.24
24 9 0.26
25 12 0.35
26 5 0.15
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (23 bp):
ATTTTTCTTATTTTATTTATCTT
Found at i:17384564 original size:24 final size:24
Alignment explanation
Indices: 17384519--17384586 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
17384509 GTCCAAGTAG
*
17384519 TCATTATTTTA-T-GTTTATTTGT
1 TCATTATTTTATTATTTTATTTGT
*
17384541 TTATTATTTTATT-TATTTATTTGT
1 TCATTATTTTATTAT-TTTATTTGT
*
17384565 TCATTTTTTTATTATTTTATTT
1 TCATTATTTTATTATTTTATTT
17384587 TTTTGGGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.26
23 1 0.03
24 27 0.69
25 1 0.03
ACGTcount: A:0.19, C:0.03, G:0.04, T:0.74
Consensus pattern (24 bp):
TCATTATTTTATTATTTTATTTGT
Found at i:17384577 original size:32 final size:31
Alignment explanation
Indices: 17384522--17384590 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
17384512 CAAGTAGTCA
*
17384522 TTATTTTATGTTTATTTGTTTATTATTTTAT
1 TTATTTTATGTTCATTTGTTTATTATTTTAT
* *
17384553 TTATTTATTTGTTCATTTTTTTATTATTTTAT
1 TTATTT-TATGTTCATTTGTTTATTATTTTAT
17384585 TT-TTTT
1 TTATTTT
17384591 GGGTTTTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 9 0.26
32 24 0.71
ACGTcount: A:0.17, C:0.01, G:0.04, T:0.77
Consensus pattern (31 bp):
TTATTTTATGTTCATTTGTTTATTATTTTAT
Found at i:17384587 original size:16 final size:17
Alignment explanation
Indices: 17384527--17384590 Score: 80
Period size: 16 Copynumber: 3.9 Consensus size: 17
17384517 AGTCATTATT
*
17384527 TTATGTTTATTTGTTTA
1 TTATGTTTATTTTTTTA
*
17384544 TTAT-TTTATTTATTTA
1 TTATGTTTATTTTTTTA
*
17384560 TT-TGTTCATTTTTTTA
1 TTATGTTTATTTTTTTA
17384576 TTAT-TTTATTTTTTT
1 TTATGTTTATTTTTTT
17384591 GGGTTTTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
15 1 0.02
16 35 0.85
17 5 0.12
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.77
Consensus pattern (17 bp):
TTATGTTTATTTTTTTA
Found at i:17384590 original size:8 final size:8
Alignment explanation
Indices: 17384532--17384590 Score: 64
Period size: 8 Copynumber: 7.4 Consensus size: 8
17384522 TTATTTTATG
*
17384532 TTTATTTG
1 TTTATTTT
*
17384540 TTTATTAT
1 TTTATTTT
*
17384548 TTTATTTA
1 TTTATTTT
*
17384556 TTTATTTG
1 TTTATTTT
*
17384564 TTCATTTT
1 TTTATTTT
*
17384572 TTTATTAT
1 TTTATTTT
17384580 TTTATTTT
1 TTTATTTT
17384588 TTT
1 TTT
17384591 GGGTTTTATC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.17, C:0.02, G:0.03, T:0.78
Consensus pattern (8 bp):
TTTATTTT
Found at i:17385519 original size:4 final size:4
Alignment explanation
Indices: 17385480--17385522 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
17385470 TTTTTGGTTT
* * * *
17385480 TTTA TTTT TTTA TCTA TTTA TCTA TTTA TTTG TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
17385523 TTTTTAAGTA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:17386463 original size:4 final size:4
Alignment explanation
Indices: 17386438--17386491 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
17386428 TTATTTTATG
*
17386438 TTTA TTTG TTTA -TTA TTTTA TTTA TTTA TTTA TTTA -TTA -TTA TTTTA
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
17386485 TTT- TTTA
1 TTTA TTTA
17386492 GGGTTTTATC
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 12 0.28
4 25 0.58
5 6 0.14
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:17387456 original size:24 final size:24
Alignment explanation
Indices: 17387429--17387481 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
17387419 CTATTTTTGG
17387429 TATTTTTTTATTT-TTTCATCTATT
1 TATTTTTTTATTTGTTT-ATCTATT
*
17387453 TATTTTTTTATTTGTTTATTTATT
1 TATTTTTTTATTTGTTTATCTATT
17387477 T-TTTT
1 TATTTT
17387482 AAGTATTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 20 0.74
25 3 0.11
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (24 bp):
TATTTTTTTATTTGTTTATCTATT
Found at i:17387482 original size:8 final size:8
Alignment explanation
Indices: 17387415--17387478 Score: 56
Period size: 8 Copynumber: 7.8 Consensus size: 8
17387405 AGCCAAGCTG
*
17387415 TTTTCTAT
1 TTTTTTAT
*
17387423 TTTTGGTAT
1 TTTT-TTAT
17387432 TTTTTTAT
1 TTTTTTAT
*
17387440 TTTTTCAT
1 TTTTTTAT
* *
17387448 CTATTTAT
1 TTTTTTAT
17387456 TTTTTTAT
1 TTTTTTAT
*
17387464 TTGTTTAT
1 TTTTTTAT
17387472 TTATTTT
1 TT-TTTT
17387479 TTTAAGTATT
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
8 34 0.77
9 10 0.23
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.77
Consensus pattern (8 bp):
TTTTTTAT
Found at i:17387587 original size:25 final size:25
Alignment explanation
Indices: 17387559--17387606 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
17387549 TTAATTATCC
17387559 AATGATGAAATTTTCA-AAAATTTTA
1 AATGAT-AAATTTTCATAAAATTTTA
* *
17387584 AATGGTAAATTTTTATAAAATTT
1 AATGATAAATTTTCATAAAATTT
17387607 ATAGGTGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (25 bp):
AATGATAAATTTTCATAAAATTTTA
Found at i:17392200 original size:17 final size:17
Alignment explanation
Indices: 17392178--17392248 Score: 72
Period size: 17 Copynumber: 4.1 Consensus size: 17
17392168 ATAATGGATG
17392178 AAAAATAAAAAATGAAA
1 AAAAATAAAAAATGAAA
*
17392195 AAAAATGAAAAATGAAA
1 AAAAATAAAAAATGAAA
** *
17392212 ATGTAA-AAAACATGAAA
1 A-AAAATAAAAAATGAAA
*
17392229 AATAAAAAAAAAATGAAA
1 AA-AAATAAAAAATGAAA
17392247 AA
1 AA
17392249 GAAGAGAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
17 29 0.67
18 14 0.33
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.13
Consensus pattern (17 bp):
AAAAATAAAAAATGAAA
Found at i:17392207 original size:24 final size:25
Alignment explanation
Indices: 17392175--17392237 Score: 94
Period size: 24 Copynumber: 2.6 Consensus size: 25
17392165 TCAATAATGG
17392175 ATGAAAAATAAAAAATG-AAAAAAA
1 ATGAAAAATAAAAAATGTAAAAAAA
* *
17392199 ATGAAAAAT-GAAAATGTAAAAAAC
1 ATGAAAAATAAAAAATGTAAAAAAA
17392223 ATGAAAAATAAAAAA
1 ATGAAAAATAAAAAA
17392238 AAAATGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.18
24 24 0.71
25 4 0.12
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.14
Consensus pattern (25 bp):
ATGAAAAATAAAAAATGTAAAAAAA
Found at i:17393367 original size:33 final size:33
Alignment explanation
Indices: 17393307--17393377 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
17393297 GCTTGATATT
* ** **
17393307 TGCATAGCATGAATTGCATTTTTGAATGTTTAG
1 TGCATAGCATGAATTGCATGTGAGAATGTCCAG
*
17393340 TGCATAGCATGCATTGCATGTGAGAATGTCCAG
1 TGCATAGCATGAATTGCATGTGAGAATGTCCAG
17393373 TGCAT
1 TGCAT
17393378 GAAGTCGGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (33 bp):
TGCATAGCATGAATTGCATGTGAGAATGTCCAG
Found at i:17393681 original size:44 final size:44
Alignment explanation
Indices: 17393611--17394025 Score: 325
Period size: 44 Copynumber: 9.3 Consensus size: 44
17393601 ATTGTCGAGA
* * *
17393611 AGCTTTATTTATTTTCTAGAAGTTGTTGAGTCTCTAATTAGAGG
1 AGCTTTATTTATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
** * *
17393655 AATTTTGTTTATTTTTTAGAAGTTGTTGAGCCTCTAATTAGAGG
1 AGCTTTATTTATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * * * *
17393699 AGCTTTATTTGCTGTTTTA-AAGTTGTTGAGCCTTTGATTAAATG
1 AGCTTTATTT-ATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * *
17393743 AGCTTTATTTAATTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGG
1 AGCTTTATTT-ATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * ** *
17393788 AGCTTTGTTTATTTTTAAGAAGTTACTGAGCCTTTGATTAGAGG
1 AGCTTTATTTATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * **
17393832 AGCTTTATTTACTTTTTTA-AAGTTATTGAGCTTCTGATTAGAAA
1 AGCTTTATTTA-TTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * * * * * * *
17393876 AACTCTATTTATTTTCTCAAAAGTCGTTAAGCTTCTGATTAGAAG
1 AGCTTTATTTATTTT-TTAGAAGTTGTTGAGCCTCTGATTAGAGG
* * **
17393921 AG-TCTTATTTATTTTTTTCAAAAGTCGTTGAGCCTC-GATTAGATA
1 AGCT-TTATTTA-TTTTTT-AGAAGTTGTTGAGCCTCTGATTAGAGG
* * ** * * *
17393966 AGGTTTATTTACTTTTTCAGAAGTCATTGAGCATCTGATTAAAAG
1 AGCTTTATTTA-TTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
* *
17394011 AGTTTTATTTGTTTT
1 AGCTTTATTTATTTT
17394026 CCAAGAATTA
Statistics
Matches: 301, Mismatches: 60, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
43 4 0.01
44 170 0.56
45 107 0.36
46 20 0.07
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (44 bp):
AGCTTTATTTATTTTTTAGAAGTTGTTGAGCCTCTGATTAGAGG
Found at i:17393768 original size:133 final size:132
Alignment explanation
Indices: 17393611--17393918 Score: 370
Period size: 133 Copynumber: 2.3 Consensus size: 132
17393601 ATTGTCGAGA
* * * * *
17393611 AGCTTTATTTATTTTCTAGAAGTTGTTGAGTCTCTAATTAGAGGAATTTTGTTTATTTTTTAGAA
1 AGCTTTATTTATTTTCTAAAAGTTGTTAAGCCTCTAATTAGAGGAACTTTGTTTATTTTTAAGAA
** * *
17393676 GTTGTTGAGCCTCTAATTAGAGGAGCTTTATTTGCTGTTTTAAAGTTGTTGAGCCTT-TGATTAA
66 GTTACTGAGCCTCTAATTAGAGGAGCTTTATTTACTGTTTTAAAGTTATTGAG-CTTCTGATTAA
17393740 ATG
130 ATG
* *
17393743 AGCTTTATTTAATTTT-TCAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTAAG
1 AGCTTTATTT-ATTTTCT-AAAAGTTGTTAAGCCTCTAATTAGAGGAACTTTGTTTATTTTTAAG
* * *
17393807 AAGTTACTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTAAAGTTATTGAGCTTCTGATTA
64 AAGTTACTGAGCCTCTAATTAGAGGAGCTTTATTTACTGTTTTAAAGTTATTGAGCTTCTGATTA
*
17393872 GAA-A
129 -AATG
* * * * *
17393876 AACTCTATTTATTTTCTCAAAAGTCGTTAAGCTTCTGATTAGA
1 AGCTTTATTTATTTTCT-AAAAGTTGTTAAGCCTCTAATTAGA
17393919 AGAGTCTTAT
Statistics
Matches: 152, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
132 19 0.12
133 131 0.86
134 2 0.01
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (132 bp):
AGCTTTATTTATTTTCTAAAAGTTGTTAAGCCTCTAATTAGAGGAACTTTGTTTATTTTTAAGAA
GTTACTGAGCCTCTAATTAGAGGAGCTTTATTTACTGTTTTAAAGTTATTGAGCTTCTGATTAAA
TG
Found at i:17393932 original size:133 final size:133
Alignment explanation
Indices: 17393662--17394008 Score: 373
Period size: 133 Copynumber: 2.6 Consensus size: 133
17393652 AGGAATTTTG
* * * * * *
17393662 TTTATTTTTTAGAAGTTGTTGAGCCTCTAATTAGAGGAGCTTTATTTGCTGTTTTAAAGTTGTTG
1 TTTATTTTTAAGAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTAAAGTTATTG
* * * * *
17393727 AGCCTT-TGATTAAATGAGCTTTATTTAATTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGC
66 AG-CTTCTGATTAAATAAACTCTATTTAATTTTTCAAAAGTCGTTAAGCCTCTGATTAGAAGAGC
*
17393791 TTTG
130 TTTA
**
17393795 TTTATTTTTAAGAAGTTACTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTAAAGTTATTG
1 TTTATTTTTAAGAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTAAAGTTATTG
*
17393860 AGCTTCTGATTAGAA-AAACTCTATTT-ATTTTCTCAAAAGTCGTTAAGCTTCTGATTAGAAGAG
66 AGCTTCTGATTA-AATAAACTCTATTTAATTTT-TCAAAAGTCGTTAAGCCTCTGATTAGAAGAG
17393923 -TCTTA
129 CT-TTA
* * ** * * *
17393928 TTTATTTTTTTCAA-AAGTCGTTGAGCC-TCGATTAGATAAGGTTTATTTACTTTTTCAGAAGTC
1 TTTA--TTTTT-AAGAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTA-AAGTT
*
17393991 ATTGAGCATCTGATTAAA
62 ATTGAGCTTCTGATTAAA
17394009 AGAGTTTTAT
Statistics
Matches: 181, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
132 9 0.05
133 107 0.59
134 29 0.16
135 34 0.19
136 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (133 bp):
TTTATTTTTAAGAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTATTTACTTTTTTAAAGTTATTG
AGCTTCTGATTAAATAAACTCTATTTAATTTTTCAAAAGTCGTTAAGCCTCTGATTAGAAGAGCT
TTA
Found at i:17393982 original size:46 final size:46
Alignment explanation
Indices: 17393717--17394025 Score: 148
Period size: 45 Copynumber: 6.9 Consensus size: 46
17393707 TTGCTGTTTT
* * * *
17393717 AAAGTTGTTGAGCCTTTGATTA-AATGAG-CTTTATTTAATTTT-TCA
1 AAAGTCGTTAAGCCTCTGATTAGAA-GAGTC-TTATTTATTTTTCTCA
* * *
17393762 AAAGTTGTTAAGCCTCTGATTAGAGGAG-CTTTGTTTA-TTTT-T-A
1 AAAGTCGTTAAGCCTCTGATTAGAAGAGTC-TTATTTATTTTTCTCA
*** * * *
17393805 AGAAGTTACTGAGCCTTTGATTAGAGGAG-CTTTATTTACTTTTT-T--
1 A-AAGTCGTTAAGCCTCTGATTAGAAGAGTC-TTATTTA-TTTTTCTCA
** * * **
17393850 AAAGTTATTGAGCTTCTGATTAGAA-AAACTCTATTTA-TTTTCTCA
1 AAAGTCGTTAAGCCTCTGATTAGAAGAGTCT-TATTTATTTTTCTCA
* *
17393895 AAAGTCGTTAAGCTTCTGATTAGAAGAGTCTTATTTATTTTTTTCA
1 AAAGTCGTTAAGCCTCTGATTAGAAGAGTCTTATTTATTTTTCTCA
* *
17393941 AAAGTCGTTGAGCCTC-GATTAGATA-AGGT-TTATTTACTTTT-TCA
1 AAAGTCGTTAAGCCTCTGATTAGA-AGA-GTCTTATTTATTTTTCTCA
* * * * * * *
17393985 GAAGTCATTGAGCATCTGATTAAAAGAGTTTTATTTGTTTT
1 AAAGTCGTTAAGCCTCTGATTAGAAGAGTCTTATTTATTTT
17394026 CCAAGAATTA
Statistics
Matches: 219, Mismatches: 29, Indels: 32
0.78 0.10 0.11
Matches are distributed among these distances:
42 4 0.02
43 5 0.02
44 82 0.37
45 95 0.43
46 33 0.15
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (46 bp):
AAAGTCGTTAAGCCTCTGATTAGAAGAGTCTTATTTATTTTTCTCA
Found at i:17393990 original size:90 final size:90
Alignment explanation
Indices: 17393610--17394025 Score: 286
Period size: 89 Copynumber: 4.7 Consensus size: 90
17393600 GATTGTCGAG
** * * * * *
17393610 AAGCTTTATTTA-TTTTCTAGAAGTTGTTGAG-TCTCTAATTAGAGGAATTTTGTTTA-TTTTTT
1 AAGCTTTATTTATTTTTC-AGAAGTCATTGAGCT-TCTGATTAGAAGAGTCTTATTTATTTTTTT
* * *
17393672 -AGAAGTTGTTGAGCCTCTAATTAGAG
64 CAAAAGTTGTTGAGCCTCTGATTAGAA
* * ** *
17393698 GAGCTTTATTTGCTGTTTT-A-AAGTTGTTGAGCCTT-TGATTA-AATGAG-CTTTATTTA-ATT
1 AAGCTTTATTT-AT-TTTTCAGAAGTCATTGAG-CTTCTGATTAGAA-GAGTC-TTATTTATTTT
* *
17393757 TTTCAAAAGTTGTTAAGCCTCTGATTAGAG
61 TTTCAAAAGTTGTTGAGCCTCTGATTAGAA
* * * * * * *
17393787 GAGCTTTGTTTATTTTTAAGAAGTTACTGAGCCTT-TGATTAGAGGAG-CTTTATTTACTTTTTT
1 AAGCTTTATTTATTTTTCAGAAGTCATTGAG-CTTCTGATTAGAAGAGTC-TTATTTATTTTTTT
* *
17393850 --AAAGTTATTGAGCTTCTGATTAGAA
64 CAAAAGTTGTTGAGCCTCTGATTAGAA
* * * * *
17393875 AAACTCTATTTATTTTCTCAAAAGTCGTTAAGCTTCTGATTAGAAGAGTCTTATTTATTTTTTTC
1 AAGCTTTATTTATTTT-TCAGAAGTCATTGAGCTTCTGATTAGAAGAGTCTTATTTATTTTTTTC
* *
17393940 AAAAGTCGTTGAGCCTC-GATTAGAT
65 AAAAGTTGTTGAGCCTCTGATTAGAA
* * * * *
17393965 AAGGTTTATTTACTTTTTCAGAAGTCATTGAGCATCTGATTAAAAGAGTTTTATTTGTTTT
1 AAGCTTTATTTA-TTTTTCAGAAGTCATTGAGCTTCTGATTAGAAGAGTCTTATTTATTTT
17394026 CCAAGAATTA
Statistics
Matches: 263, Mismatches: 47, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
87 5 0.02
88 77 0.29
89 99 0.38
90 61 0.23
91 21 0.08
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (90 bp):
AAGCTTTATTTATTTTTCAGAAGTCATTGAGCTTCTGATTAGAAGAGTCTTATTTATTTTTTTCA
AAAGTTGTTGAGCCTCTGATTAGAA
Found at i:17394321 original size:16 final size:16
Alignment explanation
Indices: 17394295--17394335 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
17394285 AGTCATTCTT
*
17394295 TTATGTTTATTTGTTTA
1 TTAT-TTTATTTATTTA
17394312 TTATTTTATTTATTTA
1 TTATTTTATTTATTTA
*
17394328 TTTTTTTA
1 TTATTTTA
17394336 GGTTTTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (16 bp):
TTATTTTATTTATTTA
Found at i:17394457 original size:3 final size:3
Alignment explanation
Indices: 17394449--17394495 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
17394439 ATTAAGTGAA
17394449 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
17394496 GTTAAAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:17395315 original size:4 final size:4
Alignment explanation
Indices: 17395293--17395338 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
17395283 TTTTGTTATT
* * *
17395293 TTTA TTT- TTTA TCTA TTTA TTTA TTTG TTTG TTTA TTTA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
17395339 AGTATTGTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
3 6 0.17
4 30 0.83
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:17395598 original size:23 final size:24
Alignment explanation
Indices: 17395562--17395606 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
17395552 TTTTATTTTT
*
17395562 AAAAAAATAATAAAACATAAAAGA
1 AAAAAAATAATAAAAAATAAAAGA
*
17395586 AAAAAAAT-GTAAAAAATAAAA
1 AAAAAAATAATAAAAAATAAAA
17395607 AAAGTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.13
Consensus pattern (24 bp):
AAAAAAATAATAAAAAATAAAAGA
Found at i:17396557 original size:104 final size:105
Alignment explanation
Indices: 17396376--17396584 Score: 321
Period size: 104 Copynumber: 2.0 Consensus size: 105
17396366 TTAGGAGCTC
* * **
17396376 CTTAAAATGATAGATTCATTAGGTGACCAATCAAACCTAGTTAAAAAAGATTGATGGTAACTCCT
1 CTTAAAAGGATAGATTCATTAGGTGACCAATCAAACCTAATTAAAAAAGATTGATGACAACTCCT
17396441 TAAGTTAAGTCTAGCTATAGATTTTTGGATCT-TATGTTA
66 TAAGTTAAGTCTAGCTATAGATTTTTGGATCTATATGTTA
* * * *
17396480 CTTAAAAGGATTGATTCATTAGGTGGCCAATCAGACCTAATTAAAAAAGATTGGTGACAACTCCT
1 CTTAAAAGGATAGATTCATTAGGTGACCAATCAAACCTAATTAAAAAAGATTGATGACAACTCCT
* *
17396545 TAAGTTAGGTCTAGCTATAGATTTTTGGATTTATATGTTA
66 TAAGTTAAGTCTAGCTATAGATTTTTGGATCTATATGTTA
17396585 TGACAGTTTG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
104 87 0.93
105 7 0.07
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35
Consensus pattern (105 bp):
CTTAAAAGGATAGATTCATTAGGTGACCAATCAAACCTAATTAAAAAAGATTGATGACAACTCCT
TAAGTTAAGTCTAGCTATAGATTTTTGGATCTATATGTTA
Found at i:17400155 original size:8 final size:8
Alignment explanation
Indices: 17400128--17400234 Score: 57
Period size: 8 Copynumber: 13.4 Consensus size: 8
17400118 ATAATGGATG
17400128 AAAAAT-A
1 AAAAATGA
17400135 AAAAA--A
1 AAAAATGA
*
17400141 AATAATGA
1 AAAAATGA
17400149 AAAAATG-
1 AAAAATGA
17400156 AAAAATGA
1 AAAAATGA
*
17400164 AGAAAA-AA
1 A-AAAATGA
*
17400172 AAAGAAAGAA
1 AAA-AATG-A
*
17400182 CAAAAATTA
1 -AAAAATGA
*
17400191 AAACATG-
1 AAAAATGA
17400198 AAAAATGTA
1 AAAAATG-A
17400207 AAAACATG-
1 AAAA-ATGA
17400215 AAAAATGGA
1 AAAAAT-GA
17400224 AAAAATGA
1 AAAAATGA
17400232 AAA
1 AAA
17400235 TTGAAAGAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 25
0.70 0.08 0.22
Matches are distributed among these distances:
6 5 0.06
7 22 0.28
8 27 0.35
9 15 0.19
10 6 0.08
11 3 0.04
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.12
Consensus pattern (8 bp):
AAAAATGA
Found at i:17400161 original size:7 final size:7
Alignment explanation
Indices: 17400125--17400240 Score: 62
Period size: 7 Copynumber: 15.9 Consensus size: 7
17400115 TCAATAATGG
17400125 ATGAAAA
1 ATGAAAA
17400132 AT-AAAA
1 ATGAAAA
*
17400138 A-AAAATA
1 ATGAAA-A
17400145 ATGAAAAA
1 ATG-AAAA
17400153 ATGAAAA
1 ATGAAAA
17400160 ATGAAGAA
1 ATGAA-AA
17400168 A--AAAA
1 ATGAAAA
*
17400173 AAGAAAGA
1 ATGAAA-A
*
17400181 A-CAAAA
1 ATGAAAA
*
17400187 ATTAAAA
1 ATGAAAA
17400194 CATGAAAA
1 -ATGAAAA
17400202 ATGTAAAAA
1 ATG--AAAA
17400211 CATGAAAA
1 -ATGAAAA
17400219 ATGGAAAAA
1 AT-G-AAAA
17400228 ATGAAAA
1 ATGAAAA
*
17400235 TTGAAA
1 ATGAAA
17400241 GAAAATGAGT
Statistics
Matches: 89, Mismatches: 5, Indels: 30
0.72 0.04 0.24
Matches are distributed among these distances:
5 3 0.03
6 12 0.13
7 37 0.42
8 21 0.24
9 13 0.15
10 3 0.03
ACGTcount: A:0.72, C:0.03, G:0.12, T:0.14
Consensus pattern (7 bp):
ATGAAAA
Found at i:17400245 original size:17 final size:16
Alignment explanation
Indices: 17400125--17400248 Score: 79
Period size: 17 Copynumber: 8.2 Consensus size: 16
17400115 TCAATAATGG
17400125 ATGAAAAAT-AAAAAA
1 ATGAAAAATGAAAAAA
*
17400140 A--AATAATG-AAAAA
1 ATGAAAAATGAAAAAA
*
17400153 ATGAAAAATGAAGAAA
1 ATGAAAAATGAAAAAA
*
17400169 A--AAAAA-G-AAAGA
1 ATGAAAAATGAAAAAA
* * *
17400181 A-CAAAAAT-TAAAAC
1 ATGAAAAATGAAAAAA
*
17400195 ATGAAAAATGTAAAAAC
1 ATGAAAAATG-AAAAAA
*
17400212 ATGAAAAATGGAAAAA
1 ATGAAAAATGAAAAAA
*
17400228 ATGAAAATTGAAAGAAA
1 ATGAAAAATGAAA-AAA
17400245 ATGA
1 ATGA
17400249 GTACTCAAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.05
13 17 0.20
14 9 0.11
15 13 0.15
16 20 0.24
17 22 0.26
ACGTcount: A:0.71, C:0.02, G:0.13, T:0.14
Consensus pattern (16 bp):
ATGAAAAATGAAAAAA
Found at i:17401362 original size:33 final size:33
Alignment explanation
Indices: 17401302--17401373 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
17401292 GCTTGACATT
* * ** **
17401302 TGCATTGCATGCATTGCATTTTTGAATGTTTAG
1 TGCATAGCATGCATTGCATGTGAGAATGTCCAG
*
17401335 TGCATAGCGTGCATTGCATGTGAGAATGTCCAG
1 TGCATAGCATGCATTGCATGTGAGAATGTCCAG
17401368 TGCATA
1 TGCATA
17401374 AAGCCGGGAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (33 bp):
TGCATAGCATGCATTGCATGTGAGAATGTCCAG
Found at i:17401764 original size:45 final size:45
Alignment explanation
Indices: 17401577--17402001 Score: 314
Period size: 45 Copynumber: 9.8 Consensus size: 45
17401567 ATTGTCCAAA
*
17401577 AGCTTTATTTATTTTCT-ATAAGTTGTTGAGCCTTTGATTAG-AG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* * * *
17401620 AACTTTGTTTA-TTT-TCAAGAAGTTATTGAGCCTTTGATTAGAGG
1 AGCTTTATTTATTTTCTCAA-AAGTTGTTGAGCCTTTGATTAGAAG
* * * * *
17401664 CGTTTTATTTACTTTT-TTAAAA-TTGTTGAACCTTTAATTA-AATG
1 AGCTTTATTTA-TTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAA-G
* * *
17401708 AGCTTTATTTATTTTCTCAAAAGTTATTAAGCCTCTGATTAGAAG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* * * * *
17401753 AGCTTTGTTTATTTT-TCAGAAGTTGTTAAGCCTTTGATTATAGG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* * *
17401797 AGC----TTTA-TTT-T--AAAGTTGTTGAGCATCTGATTAGAGG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* * * ** * * * * *
17401834 AGTTTTATTTGTTTTCCCAAAAGTCATTAAGCATCTGATTATAGG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* * * *
17401879 AGCCTTATTTATTTTTTCAAAAGTCGTTGAGCCTCTGATTA-AATG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAA-G
* **
17401924 AGCTTTATTTATTTTCTCAAAAATCATTGAGCCTTTGATTAGAAG
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
* *
17401969 AGCTTTATTTGTTTTC-CAAGA-TTG-TGAGCCTTT
1 AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTT
17402002 ACTTAAAAAA
Statistics
Matches: 305, Mismatches: 58, Indels: 39
0.76 0.14 0.10
Matches are distributed among these distances:
37 23 0.08
39 4 0.01
40 4 0.01
41 4 0.01
42 16 0.05
43 36 0.12
44 70 0.23
45 138 0.45
46 10 0.03
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.45
Consensus pattern (45 bp):
AGCTTTATTTATTTTCTCAAAAGTTGTTGAGCCTTTGATTAGAAG
Found at i:17401816 original size:37 final size:37
Alignment explanation
Indices: 17401727--17401843 Score: 99
Period size: 37 Copynumber: 3.0 Consensus size: 37
17401717 TATTTTCTCA
* * *
17401727 AAAGTTATTAAGCCTCTGATTAGAAGAGCTTTGTTTATTTTT
1 AAAGTTGTTAAGCATCTGATTAGAGGAGC----TTTA-TTTT
* * *
17401769 CAGAAGTTGTTAAGCCTTTGATTATAGGAGCTTTATTTT
1 -A-AAGTTGTTAAGCATCTGATTAGAGGAGCTTTATTTT
* *
17401808 AAAGTTGTTGAGCATCTGATTAGAGGAGTTTTATTT
1 AAAGTTGTTAAGCATCTGATTAGAGGAGCTTTATTT
17401844 GTTTTCCCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
37 30 0.47
38 1 0.02
39 4 0.06
40 4 0.06
43 1 0.02
44 24 0.38
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.44
Consensus pattern (37 bp):
AAAGTTGTTAAGCATCTGATTAGAGGAGCTTTATTTT
Found at i:17402327 original size:25 final size:23
Alignment explanation
Indices: 17402299--17402352 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 23
17402289 TTTGGATTTT
*
17402299 ATTTTTTTTGTTATTTCATTTTATG
1 ATTTTTTTTGTTATTT-ATCTT-TG
* *
17402324 ATTTGTTTTGTTGTTTATCTTTG
1 ATTTTTTTTGTTATTTATCTTTG
17402347 ATTTTT
1 ATTTTT
17402353 CATTTAGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 7 0.28
24 4 0.16
25 14 0.56
ACGTcount: A:0.13, C:0.04, G:0.11, T:0.72
Consensus pattern (23 bp):
ATTTTTTTTGTTATTTATCTTTG
Found at i:17402373 original size:24 final size:23
Alignment explanation
Indices: 17402343--17402387 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
17402333 GTTGTTTATC
* *
17402343 TTTGATTTTTCATTTAGTTTTTTA
1 TTTGATTTATC-TTTAGGTTTTTA
17402367 TTTGATTTATCTTTAGGTTTT
1 TTTGATTTATCTTTAGGTTTT
17402388 GATAGCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.16, C:0.04, G:0.11, T:0.69
Consensus pattern (23 bp):
TTTGATTTATCTTTAGGTTTTTA
Found at i:17402415 original size:3 final size:3
Alignment explanation
Indices: 17402407--17402452 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
17402397 AAATTAGGTG
17402407 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
17402453 GAGGTTAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:17403854 original size:43 final size:43
Alignment explanation
Indices: 17403802--17403893 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
17403792 AAAAAAAGTG
* * ** *
17403802 AAAATTCTAAATT-GACCCAAATTGAGGGAAATTTATAAATAAA
1 AAAAATCTAAATTAG-CCCAAATGGAGAAAAATTTAGAAATAAA
*
17403845 AAAAATCTAAATTAGCCCAAATGGATAAAAATTTAGAAATAAA
1 AAAAATCTAAATTAGCCCAAATGGAGAAAAATTTAGAAATAAA
17403888 ATAAAA
1 A-AAAA
17403894 ATAAAAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 36 0.88
44 5 0.12
ACGTcount: A:0.57, C:0.09, G:0.10, T:0.25
Consensus pattern (43 bp):
AAAAATCTAAATTAGCCCAAATGGAGAAAAATTTAGAAATAAA
Found at i:17405639 original size:31 final size:31
Alignment explanation
Indices: 17405602--17405661 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
17405592 TTAAAAATTC
* *
17405602 TTATACTAGTACAAAATTTGAAATTTAGTTT
1 TTATACTAGCACAAAATTCGAAATTTAGTTT
* *
17405633 TTATACTCGCACGAAATTCGAAATTTAGT
1 TTATACTAGCACAAAATTCGAAATTTAGT
17405662 CCTAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (31 bp):
TTATACTAGCACAAAATTCGAAATTTAGTTT
Found at i:17405856 original size:16 final size:13
Alignment explanation
Indices: 17405808--17405884 Score: 57
Period size: 14 Copynumber: 5.5 Consensus size: 13
17405798 AGAATATCAT
17405808 ATTAATAATATTAA
1 ATTAATAAT-TTAA
* *
17405822 TATT-ATCATTTAT
1 -ATTAATAATTTAA
17405835 ATTAATCAATTGTAA
1 ATTAAT-AATT-TAA
17405850 CATTAATAATTTAA
1 -ATTAATAATTTAA
**
17405864 ATTAATATATCAAA
1 ATTAATA-ATTTAA
17405878 ATTAATA
1 ATTAATA
17405885 TTATTTTAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
12 3 0.06
13 12 0.24
14 21 0.41
15 9 0.18
16 6 0.12
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.44
Consensus pattern (13 bp):
ATTAATAATTTAA
Found at i:17406847 original size:10 final size:10
Alignment explanation
Indices: 17406832--17406861 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
17406822 ATCAAGCTTT
17406832 TATATTTTAA
1 TATATTTTAA
17406842 TATATTTTAA
1 TATATTTTAA
17406852 T-TATTTTAA
1 TATATTTTAA
17406861 T
1 T
17406862 TAGTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:17406858 original size:9 final size:9
Alignment explanation
Indices: 17406834--17406863 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
17406824 CAAGCTTTTA
17406834 TATTTTAAT
1 TATTTTAAT
17406843 ATATTTTAAT
1 -TATTTTAAT
17406853 TATTTTAAT
1 TATTTTAAT
17406862 TA
1 TA
17406864 GTAATTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Done.