Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 11 of 129
Found at i:1732388 original size:123 final size:123
Alignment explanation
Indices: 1732175--1732457 Score: 343
Period size: 123 Copynumber: 2.4 Consensus size: 123
1732165 TCTTGTGTAG
* *
1732175 GGAAAATTGATACTTTCAACTTTT-CCCTAAAAATA------TTTTTTGGAAATTTATTTTTAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTTTTTTGAAAATTTATTTTTAAG
* **
1732233 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-A-TTGCAAA
66 GAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCAGAAAATTTGATTTGC-AA
* * * *
1732291 GGAAAATTGATACTTTCGACTTTTCCTCAAAAATTTTTTTTTTTTTTTGAAAATTTATTTTTAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTTTTTTGAAAATTTATTTTTAAG
* * * *
1732356 GAAAATGGATTACTTTCAACTTTT-TCCTAAAATATTTTTCAGAAATTTTGATTTTCAA
66 GAAAATGGA-TACTTTCAACTTTTCCCCAAAAATATTTTTCAGAAAATTTGATTTGCAA
*
1732414 GGAAGATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTT
1732458 GGAACTTTTG
Statistics
Matches: 139, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
116 23 0.17
117 7 0.05
122 12 0.09
123 80 0.58
124 17 0.12
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (123 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTTTTTTTGAAAATTTATTTTTAAG
GAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAGAAAATTTGATTTGCAA
Found at i:1732514 original size:28 final size:28
Alignment explanation
Indices: 1732481--1732558 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
1732471 TTTATTTAAA
*
1732481 GAAAATAGAATAATAA-AAAAATAAAAGT
1 GAAAATA-AATAAAAATAAAAATAAAAGT
1732509 GAAAATAAATAAAAATAAAAATAAAA--
1 GAAAATAAATAAAAATAAAAATAAAAGT
* *
1732535 -AAAGTAAAAACAAAATAAAAATAA
1 GAAAATAAATA-AAAATAAAAATAA
1732559 GATAAAGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
25 8 0.18
26 13 0.29
27 7 0.16
28 17 0.38
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.15
Consensus pattern (28 bp):
GAAAATAAATAAAAATAAAAATAAAAGT
Found at i:1732518 original size:16 final size:16
Alignment explanation
Indices: 1732495--1732554 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
1732485 ATAGAATAAT
*
1732495 AAAA-AAATAAAAGTG
1 AAAATAAATAAAAGTA
*
1732510 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
1732526 AAAATAAA-AAAAGTA
1 AAAATAAATAAAAGTA
*
1732541 AAAACAAAATAAAA
1 AAAA-TAAATAAAA
1732555 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
15 14 0.37
16 20 0.53
17 4 0.11
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:1732524 original size:6 final size:6
Alignment explanation
Indices: 1732497--1732572 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
1732487 AGAATAATAA
* *
1732497 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAAAT AAAAAAAGT AAAAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT --AAAAA-T AAAAAT
* * *
1732545 CAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1732573 AATATTAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
4 4 0.07
5 8 0.14
6 33 0.59
7 5 0.09
8 5 0.09
9 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:1732543 original size:37 final size:34
Alignment explanation
Indices: 1732477--1732576 Score: 101
Period size: 37 Copynumber: 2.7 Consensus size: 34
1732467 GATTTTTATT
* **
1732477 TAAAGAAAATAGAATAATAAAAAAATAAAAGTGAAAA
1 TAAAAAAAATA-AA-AATAAAAAAATAAAA-ACAAAA
1732514 TAAATAAAAATAAAAATAAAAAAAGTAAAAACAAAA
1 TAAA-AAAAATAAAAATAAAAAAA-TAAAAACAAAA
*
1732550 TAAAAATAAGATAAAGATAAAAAAATA
1 TAAAAA-AA-ATAAAAATAAAAAAATA
1732577 TTAAATAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
35 2 0.04
36 22 0.40
37 25 0.45
38 6 0.11
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (34 bp):
TAAAAAAAATAAAAATAAAAAAATAAAAACAAAA
Found at i:1732549 original size:15 final size:15
Alignment explanation
Indices: 1732494--1732549 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
1732484 AATAGAATAA
*
1732494 TAAAAA-AATAAAAG
1 TAAAAATAAAAAAAG
* *
1732508 TGAAAATAAATAAAAA
1 TAAAAATAAA-AAAAG
1732524 TAAAAATAAAAAAAG
1 TAAAAATAAAAAAAG
*
1732539 TAAAAACAAAA
1 TAAAAATAAAA
1732550 TAAAAATAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 5 0.15
15 16 0.47
16 13 0.38
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (15 bp):
TAAAAATAAAAAAAG
Found at i:1732555 original size:26 final size:28
Alignment explanation
Indices: 1732520--1732572 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
1732510 AAAATAAATA
1732520 AAAATAAAAATAA-AAAAAG-TAAAAAC
1 AAAATAAAAATAAGAAAAAGATAAAAAC
*
1732546 AAAATAAAAATAAGATAAAGATAAAAA
1 AAAATAAAAATAAGAAAAAGATAAAAA
1732573 AATATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.54
27 5 0.21
28 6 0.25
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (28 bp):
AAAATAAAAATAAGAAAAAGATAAAAAC
Found at i:1732556 original size:32 final size:30
Alignment explanation
Indices: 1732482--1732558 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 30
1732472 TTATTTAAAG
* *
1732482 AAAATAGAATAATAAAAAAATAAAAGTGAAAA
1 AAAATA-AA-AATAAAAAAAAAAAAGTAAAAA
*
1732514 TAAATAAAAATAAAAATAAAAAAAGTAAAAA
1 AAAATAAAAATAAAAA-AAAAAAAGTAAAAA
1732545 CAAAATAAAAATAA
1 -AAAATAAAAATAA
1732559 GATAAAGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 8 0.21
31 14 0.36
32 17 0.44
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (30 bp):
AAAATAAAAATAAAAAAAAAAAAGTAAAAA
Found at i:1732563 original size:11 final size:11
Alignment explanation
Indices: 1732497--1732652 Score: 83
Period size: 11 Copynumber: 13.9 Consensus size: 11
1732487 AGAATAATAA
1732497 AAAAATAAAAGT
1 AAAAATAAAA-T
*
1732509 GAAAAT-AAAT
1 AAAAATAAAAT
1732519 AAAAATAAAA-
1 AAAAATAAAAT
*
1732529 ATAAAA-AAAGT
1 A-AAAATAAAAT
*
1732540 AAAAACAAAAT
1 AAAAATAAAAT
*
1732551 AAAAATAAGAT
1 AAAAATAAAAT
*
1732562 AAAGATAAAA-
1 AAAAATAAAAT
* *
1732572 AAATATTAAAT
1 AAAAATAAAAT
*
1732583 AAAACCTAATCTAAT
1 AAAA-ATAA---AAT
*
1732598 AAATATAAAA-
1 AAAAATAAAAT
1732608 AACAAATAAAAT
1 AA-AAATAAAAT
*
1732620 AAAAAAATAAAT
1 AAAAATA-AAAT
1732632 AAAGAA-ATAAAT
1 AAA-AATA-AAAT
1732644 AAAAA-AAAA
1 AAAAATAAAA
1732653 CCTGGAGCGG
Statistics
Matches: 114, Mismatches: 17, Indels: 28
0.72 0.11 0.18
Matches are distributed among these distances:
10 27 0.24
11 51 0.45
12 25 0.22
13 2 0.02
14 3 0.03
15 6 0.05
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:1732602 original size:4 final size:4
Alignment explanation
Indices: 1732595--1732646 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
1732585 AACCTAATCT
* * * *
1732595 AATA AATA TAAAA AACA AATAA AATA AAAA AATA AATA AAGA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
1732645 AA
1 AA
1732647 AAAAAACCTG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
4 32 0.82
5 7 0.18
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (4 bp):
AATA
Found at i:1732626 original size:17 final size:18
Alignment explanation
Indices: 1732598--1732634 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
1732588 CTAATCTAAT
1732598 AAATATAAAAAACAAATA
1 AAATATAAAAAACAAATA
*
1732616 AAATA-AAAAAATAAATA
1 AAATATAAAAAACAAATA
1732633 AA
1 AA
1732635 GAAATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (18 bp):
AAATATAAAAAACAAATA
Found at i:1733551 original size:22 final size:22
Alignment explanation
Indices: 1733504--1733601 Score: 64
Period size: 22 Copynumber: 4.5 Consensus size: 22
1733494 ATTAGAGAAG
* * *
1733504 ATAATAAA-AAAAATATTATAGG
1 ATAATAAATAAAAAAATAATA-T
1733526 ATAA-AAATAAAAATAATAATAT
1 ATAATAAATAAAAA-AATAATAT
1733548 ATAATTAAATAAATAAAAATAA-AT
1 ATAA-TAAAT-AA-AAAAATAATAT
*
1733572 A-AATAAATAAAACAAAAAATA-
1 ATAATAAATAAAA-AAATAATAT
1733593 ATAA-AAATA
1 ATAATAAATA
1733602 TATATATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
20 2 0.03
21 16 0.25
22 21 0.33
23 7 0.11
24 7 0.11
25 7 0.11
26 3 0.05
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.24
Consensus pattern (22 bp):
ATAATAAATAAAAAAATAATAT
Found at i:1733562 original size:4 final size:4
Alignment explanation
Indices: 1733530--1733634 Score: 55
Period size: 4 Copynumber: 27.2 Consensus size: 4
1733520 TATAGGATAA
* * *
1733530 AAAT AAAA ATAAT -AAT ATAT AATT AAAT AAAT -AA- AAAT AAAT AAAT
1 AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * *
1733576 AAAT AAA- ACAAA AAAT -AAT AAA- AATAT ATAT ATTAT TAAT -AAT AAAT
1 AAAT AAAT A-AAT AAAT AAAT AAAT AA-AT AAAT A-AAT AAAT AAAT AAAT
1733623 AAAT -AAT AAAT A
1 AAAT AAAT AAAT A
1733635 CATAGGATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
3 19 0.24
4 53 0.67
5 7 0.09
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (4 bp):
AAAT
Found at i:1733572 original size:14 final size:14
Alignment explanation
Indices: 1733530--1733578 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
1733520 TATAGGATAA
1733530 AAATAAAAAT-AAT
1 AAATAAAAATAAAT
* *
1733543 AATATATAATTAAAT
1 AA-ATAAAAATAAAT
1733558 AAATAAAAATAAAT
1 AAATAAAAATAAAT
1733572 AAATAAA
1 AAATAAA
1733579 TAAAACAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 2 0.07
14 23 0.77
15 5 0.17
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATAAAAATAAAT
Found at i:1733578 original size:18 final size:17
Alignment explanation
Indices: 1733504--1733632 Score: 88
Period size: 18 Copynumber: 7.5 Consensus size: 17
1733494 ATTAGAGAAG
*
1733504 ATAATAAAAA-AAATATT
1 ATAATAAAAATAAATA-A
1733521 ATAGGATAAAAAT-AA-AA
1 ATA--ATAAAAATAAATAA
* *
1733538 ATAATAATATATAATTAA
1 ATAATAA-AAATAAATAA
1733556 ATAAATAAAAATAAATAA
1 AT-AATAAAAATAAATAA
*
1733574 ATAA-ATAAAACAAA-AA
1 ATAATA-AAAATAAATAA
*
1733590 ATAATAAAAATATATATA
1 ATAATAAAAATAAATA-A
* * *
1733608 TTATTAATAATAAATAA
1 ATAATAAAAATAAATAA
1733625 ATAATAAA
1 ATAATAAA
1733633 TACATAGGAT
Statistics
Matches: 86, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
15 4 0.05
16 16 0.19
17 24 0.28
18 28 0.33
19 14 0.16
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.28
Consensus pattern (17 bp):
ATAATAAAAATAAATAA
Found at i:1733623 original size:55 final size:56
Alignment explanation
Indices: 1733528--1733634 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 56
1733518 ATTATAGGAT
1733528 AAAAATAAAAATAATAATATATAATTAAATAAATAAAAATAAATAAATAAATAAAACA
1 AAAAATAAAAATAATAATATATAATTAAATAAAT-AAAATAAAT-AATAAATAAAACA
*
1733586 AAAAATAATAAA-AATATATATATTATT-AAT-AAT-AAATAAATAATAAATA
1 AAAAATAA-AAATAATA-ATATATAATTAAATAAATAAAATAAATAATAAATA
1733635 CATAGGATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
54 8 0.17
55 8 0.17
57 3 0.07
58 15 0.33
59 12 0.26
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (56 bp):
AAAAATAAAAATAATAATATATAATTAAATAAATAAAATAAATAATAAATAAAACA
Found at i:1733953 original size:18 final size:18
Alignment explanation
Indices: 1733930--1733971 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1733920 AGAGGTAACT
1733930 TTTTTTCATTTTTTTTGC
1 TTTTTTCATTTTTTTTGC
**
1733948 TTTTTTGTTTTTTTTTGC
1 TTTTTTCATTTTTTTTGC
1733966 TTTTTT
1 TTTTTT
1733972 TTTTAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.07, G:0.07, T:0.83
Consensus pattern (18 bp):
TTTTTTCATTTTTTTTGC
Found at i:1734059 original size:1 final size:1
Alignment explanation
Indices: 1734053--1734102 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
1734043 ATAGAGGTAA
* * * * *
1734053 TTTTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTTATTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1734103 AAATGATCAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.06, C:0.00, G:0.04, T:0.90
Consensus pattern (1 bp):
T
Found at i:1734077 original size:18 final size:18
Alignment explanation
Indices: 1734054--1734095 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
1734044 TAGAGGTAAT
1734054 TTTTTTTTTGTTTTTTTA
1 TTTTTTTTTGTTTTTTTA
1734072 TTTTTTTTTGTTTTTTTA
1 TTTTTTTTTGTTTTTTTA
1734090 TTTTTT
1 TTTTTT
1734096 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.90
Consensus pattern (18 bp):
TTTTTTTTTGTTTTTTTA
Found at i:1734093 original size:25 final size:23
Alignment explanation
Indices: 1734053--1734102 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 23
1734043 ATAGAGGTAA
1734053 TTTTTTTTTTGTTTTTTTATTTT
1 TTTTTTTTTTGTTTTTTTATTTT
*
1734076 TTTTTGTTTTTTTATTTTTTATTTT
1 TTTTT-TTTTTGT-TTTTTTATTTT
1734101 TT
1 TT
1734103 AAATGATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 5 0.21
24 6 0.25
25 13 0.54
ACGTcount: A:0.06, C:0.00, G:0.04, T:0.90
Consensus pattern (23 bp):
TTTTTTTTTTGTTTTTTTATTTT
Found at i:1734149 original size:126 final size:123
Alignment explanation
Indices: 1733859--1734214 Score: 488
Period size: 126 Copynumber: 2.9 Consensus size: 123
1733849 TTTTTTTTAC
* * *
1733859 CAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
** **
1733924 GTAACTTTTTTTCATTTTTTT-TGCTTTTTTGTTTTTTTTTGCTTTTTTTTTTAAATTGAT
66 GTAA-TTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTTTT--TTTTTTTTTTAAATTGAT
* * *
1733984 CAAAGCTCCTCTAAGTAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1734049 GTAATTTTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTTATTTTTTATTTTTTAAA-TGAT
66 GTAA--TTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTT-TTTTTT-TTTTTTAAATTGAT
* *
1734110 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAAGAAACATAAATGAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* *
1734175 GCAA-CTTTTTTG-TTTTTTA-TTTTTTTTGTTTTTTTTTTTT
66 GTAATTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTTTTTTT
1734215 AAAGCTCCTC
Statistics
Matches: 209, Mismatches: 18, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
120 5 0.02
121 16 0.08
122 7 0.03
123 7 0.03
125 63 0.30
126 85 0.41
127 24 0.11
128 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (123 bp):
CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
GTAATTTTTTTTGTTTTTTTATTTTTTTTTGTTTTTTTTTTTTTTTTTTTAAATTGAT
Found at i:1734201 original size:16 final size:15
Alignment explanation
Indices: 1734180--1734214 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
1734170 TAGAGGCAAC
1734180 TTTTTTGTTTTTTATT
1 TTTTTTGTTTTTT-TT
1734196 TTTTTTGTTTTTTTT
1 TTTTTTGTTTTTTTT
1734211 TTTT
1 TTTT
1734215 AAAGCTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.03, C:0.00, G:0.06, T:0.91
Consensus pattern (15 bp):
TTTTTTGTTTTTTTT
Found at i:1734307 original size:42 final size:41
Alignment explanation
Indices: 1734218--1734461 Score: 364
Period size: 42 Copynumber: 5.9 Consensus size: 41
1734208 TTTTTTTAAA
* ***
1734218 GCTCCTCTAAACAGAGACTTGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
1734259 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1734301 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
1734343 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAAGT-AATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
1734383 GCTCCTTTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
* *
1734425 GCTCCTTTAAACAGAGGCACCATGACTTTGAGAAAGT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGT
1734462 GACTTTGAGA
Statistics
Matches: 188, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
40 33 0.18
41 36 0.19
42 118 0.63
43 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:1734417 original size:82 final size:83
Alignment explanation
Indices: 1734218--1734461 Score: 375
Period size: 82 Copynumber: 2.9 Consensus size: 83
1734208 TTTTTTTAAA
* ***
1734218 GCTCCTCTAAACAGAGACTTGACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
1734282 GACTTTTAGAAAGTAAATT
66 GAC-TTTGGAAAGTAAATT
*
1734301 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1734366 GACTTTGGAAAGT-AATT
66 GACTTTGGAAAGTAAATT
* * *
1734383 GCTCCTTTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1734448 GACTTTGAGAAAGT
66 GACTTTG-GAAAGT
1734462 GACTTTGAGA
Statistics
Matches: 149, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
82 72 0.48
83 42 0.28
84 35 0.23
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGGAAAGTAAATT
Found at i:1734466 original size:14 final size:14
Alignment explanation
Indices: 1734447--1734475 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1734437 AGAGGCACCA
1734447 TGACTTTGAGAAAG
1 TGACTTTGAGAAAG
1734461 TGACTTTGAGAAAG
1 TGACTTTGAGAAAG
1734475 T
1 T
1734476 AAATTGCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (14 bp):
TGACTTTGAGAAAG
Found at i:1734490 original size:180 final size:173
Alignment explanation
Indices: 1734390--1734707 Score: 402
Period size: 180 Copynumber: 1.8 Consensus size: 173
1734380 ATTGCTCCTT
* *
1734390 TAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCATGAC-TT-
1 TAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTC
* * *
1734453 T-GAGA-A-AGT-GACTTTGAGAAAGTAAATTGCTCCTCTAAATAGAGGCACCACGACTTT-TAG
65 TCGAAATAGAGTCGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGA-
*
1734513 AAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTCCCCTC
129 AAAGTAAATTGCTCCTCTAAACAAAGGCACCATGACTTTCCCCTC
*
1734558 TAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTCC
1 TAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTT--
*
1734623 CCTCTAAATAGAGTCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
64 -CTCGAAATAGAGT-----CGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1734687 TTTTGG-AAAGTAAATTGCTCC
123 -TTTGGAAAAGTAAATTGCTCC
1734708 CTGACAATCA
Statistics
Matches: 127, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
167 34 0.27
168 25 0.20
172 1 0.01
173 2 0.02
174 1 0.01
175 3 0.02
180 51 0.40
181 10 0.08
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (173 bp):
TAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTCT
CGAAATAGAGTCGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAA
AGTAAATTGCTCCTCTAAACAAAGGCACCATGACTTTCCCCTC
Found at i:1734497 original size:56 final size:56
Alignment explanation
Indices: 1734406--1734517 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 56
1734396 GAGGCACCAC
* *
1734406 GACTTTGGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCATGACTTTGAGAAAGT
1 GACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGT
* *
1734462 GACTTT-GAGAAAGTAAATTGCTCCTCTAAATAGAGGCACCACGACTTTTAGAAAGT
1 GACTTTGGA-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGT
1734518 AAATTGCTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 2 0.04
56 49 0.96
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (56 bp):
GACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGT
Found at i:1734521 original size:42 final size:42
Alignment explanation
Indices: 1734462--1734551 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
1734452 TTGAGAAAGT
*
1734462 GACTTTGAGAAAGTAAATTGCTCCTCTAAATAGAGGCACCAC
1 GACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
1734504 GACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAT
1 GACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1734546 GACTTT
1 GACTTT
1734552 CCCCTCTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
GACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
Found at i:1734548 original size:98 final size:96
Alignment explanation
Indices: 1734366--1734551 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 96
1734356 AAGGCACCAC
* *
1734366 GACTTTGGAAAGTAATTGCTCCTTTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCT
1 GACTTTGGAAAGTAATTGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCT
*
1734431 TTAAACAGAGGCACCATGACTTTGAGAAAGT
66 CTAAACAGAGGCACCATGACTTTGAGAAAGT
*
1734462 GACTTTGAGAAAGTAAATTGCTCCTCTAAATAGAGGCACCACGACTTTTAG-AAAGTAAATTGCT
1 GACTTTG-GAAAGT-AATTGCTCCTCTAAACAGAGGCACCACGAC-TTTAGAAAAGTAAATTGCT
1734526 CCTCTAAACAGAGGCACCATGACTTT
63 CCTCTAAACAGAGGCACCATGACTTT
1734552 CCCCTCTAAA
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
96 7 0.08
97 6 0.07
98 66 0.80
99 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (96 bp):
GACTTTGGAAAGTAATTGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCT
CTAAACAGAGGCACCATGACTTTGAGAAAGT
Found at i:1734566 original size:28 final size:28
Alignment explanation
Indices: 1734526--1734579 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
1734516 GTAAATTGCT
*
1734526 CCTCTAAACAGAGGCACCATGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
*
1734554 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
1734580 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:1734606 original size:69 final size:69
Alignment explanation
Indices: 1734484--1734689 Score: 376
Period size: 69 Copynumber: 3.0 Consensus size: 69
1734474 GTAAATTGCT
* *
1734484 CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGAC
1 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1734549 TTTCC
65 TTTCC
1734554 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1734619 TTCC
66 TTCC
*
1734623 CCTCTAAATAGAGTCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1734688 TT
66 TT
1734690 TGGAAAGTAA
Statistics
Matches: 133, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
69 110 0.83
70 23 0.17
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (69 bp):
CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
TTCC
Found at i:1734635 original size:28 final size:28
Alignment explanation
Indices: 1734595--1734648 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
1734585 GTAAATTGCT
1734595 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
1734623 CCTCTAAATAGAGTCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
1734649 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:1734668 original size:41 final size:42
Alignment explanation
Indices: 1734623--1734707 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
1734613 ACGACTTTCC
* *
1734623 CCTCTAAATAGAGTCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1734664 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1734706 CC
1 CC
1734708 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:1734999 original size:44 final size:43
Alignment explanation
Indices: 1734929--1735042 Score: 119
Period size: 43 Copynumber: 2.6 Consensus size: 43
1734919 TGGAGGCTCA
* *
1734929 CATCCAAAAGTTAAAGGTTCTT-ATTTGGCAAACTTGG-AATTCAT
1 CATCCAAAAATTAAAGCTT-TTCATTTGG-AAACTTGGAAATTC-T
**
1734973 -ATCCAAAAATCTAAAGCTTTTCATTT-GAATTTTGGAAATTCT
1 CATCCAAAAAT-TAAAGCTTTTCATTTGGAAACTTGGAAATTCT
1735015 CATCCAAAAATTCAAAGCTTTTCATTTG
1 CATCCAAAAATT-AAAGCTTTTCATTTG
1735043 AGTTCAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
42 8 0.13
43 41 0.68
44 11 0.18
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (43 bp):
CATCCAAAAATTAAAGCTTTTCATTTGGAAACTTGGAAATTCT
Found at i:1735013 original size:43 final size:42
Alignment explanation
Indices: 1734962--1735043 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 42
1734952 TTTGGCAAAC
1734962 TTGGAATTCAT-ATCCAAAAA-TCTAAAGCTTTTCATTTGAATT
1 TTGGAATTC-TCATCCAAAAATTC-AAAGCTTTTCATTTGAATT
1735004 TTGGAAATTCTCATCCAAAAATTCAAAGCTTTTCATTTGA
1 TTGG-AATTCTCATCCAAAAATTCAAAGCTTTTCATTTGA
1735044 GTTCAAAGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
42 5 0.14
43 30 0.81
44 2 0.05
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (42 bp):
TTGGAATTCTCATCCAAAAATTCAAAGCTTTTCATTTGAATT
Found at i:1735275 original size:22 final size:22
Alignment explanation
Indices: 1735227--1735285 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
1735217 GGTTTCACTC
*
1735227 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTCAAAT
**
1735250 -TCAAAGATTCTCATTTCAGTT
1 CTCAAAGATTCTCATTTCAAAT
*
1735271 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
1735286 CAAAACATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTCAAAT
Found at i:1736385 original size:8 final size:9
Alignment explanation
Indices: 1736357--1736411 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
1736347 TTTGAATCTC
1736357 TTTTTTTCA
1 TTTTTTTCA
*
1736366 -TTTTCTCA
1 TTTTTTTCA
*
1736374 TTTTTTTCT
1 TTTTTTTCA
1736383 TTTTTTCTCA
1 TTTTTT-TCA
*
1736393 TTTTTTTCT
1 TTTTTTTCA
1736402 TTTTTTTCA
1 TTTTTTTCA
1736411 T
1 T
1736412 CATCTTCTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
8 7 0.18
9 23 0.61
10 8 0.21
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:1736404 original size:18 final size:19
Alignment explanation
Indices: 1736366--1736438 Score: 94
Period size: 19 Copynumber: 3.7 Consensus size: 19
1736356 CTTTTTTTCA
1736366 TTTTCTCATTTTTTTCTTT
1 TTTTCTCATTTTTTTCTTT
1736385 TTTTCTCATTTTTTTCTTTT
1 TTTTCTCATTTTTTTC-TTT
*
1736405 TTTTCATCATCTTCTCTT-TTT
1 TTTTC-TCAT-TT-TTTTCTTT
1736426 TTTTCTCATTTTT
1 TTTTCTCATTTTT
1736439 CATCCATTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
18 1 0.02
19 18 0.38
20 12 0.25
21 12 0.25
22 2 0.04
23 3 0.06
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCTCATTTTTTTCTTT
Found at i:1740410 original size:57 final size:57
Alignment explanation
Indices: 1740348--1740686 Score: 439
Period size: 57 Copynumber: 5.7 Consensus size: 57
1740338 TCTTGTGTAG
*
1740348 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
1740405 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
**
1740462 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTTAA
*
1740521 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-------TATTTTTTTG-AAATTTATTTTTA
1740585 A
57 A
* ** *
1740586 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTTAA
* *
1740645 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1740687 TGGAACTTTT
Statistics
Matches: 249, Mismatches: 18, Indels: 28
0.84 0.06 0.09
Matches are distributed among these distances:
57 87 0.35
58 28 0.11
59 81 0.33
65 49 0.20
66 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
Found at i:1740532 original size:59 final size:58
Alignment explanation
Indices: 1740348--1740686 Score: 443
Period size: 59 Copynumber: 5.7 Consensus size: 58
1740338 TCTTGTGTAG
*
1740348 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
*
1740405 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
**
1740462 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATA-TTTTTTTGAAAATTTATTTTTAA
*
1740521 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-------TATTTTTTTGAAAATTTATTTTTA
1740585 A
58 A
* ** * *
1740586 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTT-ATTTTTAA
* *
1740645 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1740687 TGGAACTTTT
Statistics
Matches: 249, Mismatches: 18, Indels: 28
0.84 0.06 0.09
Matches are distributed among these distances:
56 7 0.03
57 77 0.31
58 24 0.10
59 88 0.35
65 49 0.20
66 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:1740686 original size:124 final size:120
Alignment explanation
Indices: 1740348--1740687 Score: 462
Period size: 124 Copynumber: 2.8 Consensus size: 120
1740338 TCTTGTGTAG
**
1740348 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTCAAGGAAAATT
* *
1740413 GATACTTTCAACTTTTCCCTAAAAATA------TTTTTTGGAAATTTATTTTTAA
66 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTTGAAAATTTATTTTTAA
1740462 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTTGAAAATTTA-TTTCAAAGGAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTC-AAGGAA
* *
1740525 AATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
62 AATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTTTTTTTGAAAATTTATTTTTAA
* ** *
1740586 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAAGGAAGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTCAAGGAAAA
1740651 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
64 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1740688 GGAACTTTTG
Statistics
Matches: 198, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
114 27 0.14
115 18 0.09
116 40 0.20
122 11 0.06
123 16 0.08
124 82 0.41
125 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTTGAAAATTTATTTTTAA
Found at i:1740733 original size:6 final size:6
Alignment explanation
Indices: 1740712--1740805 Score: 54
Period size: 6 Copynumber: 15.7 Consensus size: 6
1740702 TTATTTAAAG
* *
1740712 AAAAT- AAAATA ATAAA-A ATAAATA AAAGTG AAAAT- -AAATA AAAATA
1 AAAATA AAAATA A-AAATA A-AAATA AAAATA AAAATA AAAATA AAAATA
* * * *
1740758 AAAATA AAGAAAA GTAAAACA AAAATA AAAAT- AAGATA AAGATA AAAA
1 AAAATA AA-AATA --AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
1740806 AATATTAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
4 4 0.06
5 9 0.12
6 46 0.64
7 8 0.11
8 3 0.04
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:1740747 original size:16 final size:16
Alignment explanation
Indices: 1740712--1740787 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
1740702 TTATTTAAAG
*
1740712 AAAATAAA-ATAA-TA
1 AAAATAAATAAAAGTA
*
1740726 AAAATAAATAAAAGTG
1 AAAATAAATAAAAGTA
*
1740742 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
1740758 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
1740774 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
1740788 ATAAGATAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
14 8 0.16
15 3 0.06
16 32 0.63
17 8 0.16
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:1740762 original size:32 final size:33
Alignment explanation
Indices: 1740712--1740799 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 33
1740702 TTATTTAAAG
* *
1740712 AAAATAAAATAATAAAAATAAATAAAAGTGAAA-A
1 AAAAT-AAA-AATAAAAATAAAGAAAAGTAAAACA
*
1740746 TAAATAAAAATAAAAATAAAGAAAAGTAAAACA
1 AAAATAAAAATAAAAATAAAGAAAAGTAAAACA
*
1740779 AAAATAAAAAT-AAGATAAAGA
1 AAAATAAAAATAAAAATAAAGA
1740800 TAAAAAAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 30 0.62
33 14 0.29
34 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (33 bp):
AAAATAAAAATAAAAATAAAGAAAAGTAAAACA
Found at i:1740796 original size:11 final size:11
Alignment explanation
Indices: 1740712--1740819 Score: 64
Period size: 10 Copynumber: 9.8 Consensus size: 11
1740702 TTATTTAAAG
1740712 AAAATAAAATAAT
1 AAAAT-AAA-AAT
*
1740725 AAAA-ATAAAT
1 AAAATAAAAAT
*
1740735 AAAAGTGAAAAT
1 AAAA-TAAAAAT
1740747 -AAATAAAAAT
1 AAAATAAAAAT
*
1740757 AAAAATAAAGA-
1 -AAAATAAAAAT
*
1740768 AAAGTAAAACA-
1 AAAATAAAA-AT
1740779 AAAATAAAAAT
1 AAAATAAAAAT
* *
1740790 AAGATAAAGAT
1 AAAATAAAAAT
*
1740801 AAAA-AAATAT
1 AAAATAAAAAT
*
1740811 TAAATAAAA
1 AAAATAAAA
1740820 CCTAATCTAA
Statistics
Matches: 74, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
10 29 0.39
11 29 0.39
12 12 0.16
13 4 0.05
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:1740798 original size:27 final size:28
Alignment explanation
Indices: 1740751--1740804 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
1740741 GAAAATAAAT
1740751 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
1740778 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
1740805 AAATATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:1740972 original size:10 final size:10
Alignment explanation
Indices: 1740957--1740982 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1740947 GGCTTGAGAA
1740957 GCTCGGCTTG
1 GCTCGGCTTG
1740967 GCTCGGCTTG
1 GCTCGGCTTG
1740977 GCTCGG
1 GCTCGG
1740983 AGGGGGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.42, T:0.27
Consensus pattern (10 bp):
GCTCGGCTTG
Found at i:1741788 original size:27 final size:26
Alignment explanation
Indices: 1741758--1741839 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 26
1741748 AAAAAATTAT
1741758 TATAGAATAAAAAAATAAAAATAAAAA
1 TATA-AATAAAAAAATAAAAATAAAAA
*
1741785 TATATAATTAAATAAATAAAAATACAAAA
1 TATA-AA-TAAAAAAATAAAAATA-AAAA
1741814 -ATAAATAAAATAAA-AAATAATAAAAA
1 TATAAATAAAA-AAATAAA-AATAAAAA
1741840 AATATATATT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
26 11 0.23
27 15 0.31
28 18 0.38
29 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (26 bp):
TATAAATAAAAAAATAAAAATAAAAA
Found at i:1741802 original size:4 final size:4
Alignment explanation
Indices: 1741763--1741878 Score: 68
Period size: 4 Copynumber: 30.0 Consensus size: 4
1741753 ATTATTATAG
* * * *
1741763 AATA AAAA AATA AA-A ATAAA AATA TATA ATTA AATA AAT- AA-A AATA
1 AATA AATA AATA AATA A-ATA AATA AATA AATA AATA AATA AATA AATA
* * * *
1741809 CAA-A AATA AATAA AATA AA-A AAT- AATA AAAA AATA TATA TTATT AAT-
1 -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA -AATA AATA
1741856 AATA AATA AATA AAT- AATA AATA
1 AATA AATA AATA AATA AATA AATA
1741879 CATAGGATAT
Statistics
Matches: 88, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
3 20 0.23
4 57 0.65
5 11 0.12
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:1741804 original size:22 final size:23
Alignment explanation
Indices: 1741766--1741939 Score: 85
Period size: 24 Copynumber: 7.3 Consensus size: 23
1741756 ATTATAGAAT
*
1741766 AAAA-AAATAAAAATAAAAATATA
1 AAAATAAAT-AAAATAAAAATACA
* *
1741789 TAATTAAAT-AAATAAAAATACA
1 AAAATAAATAAAATAAAAATACA
1741811 AAAATAAATAAAATAAAAAATA-A
1 AAAATAAATAAAAT-AAAAATACA
* **
1741834 TAAAA-AAATATATATTATTAATA-A
1 -AAAATAAATA-A-AATAAAAATACA
*
1741858 TAAATAAAT-AAATAATAAATACA
1 AAAATAAATAAAATAA-AAATACA
* *
1741881 TAGGATATACATAAAATATAAAATA-A
1 -A--AAATAAATAAAATA-AAAATACA
1741907 AATAA-AAATAAAAATAAAAATGACA
1 AA-AATAAAT-AAAATAAAAAT-ACA
*
1741932 AAGATAAA
1 AAAATAAA
1741940 ATTGGACCTA
Statistics
Matches: 114, Mismatches: 18, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
21 3 0.03
22 24 0.21
23 25 0.22
24 35 0.31
25 9 0.08
26 7 0.06
27 10 0.09
28 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAATAAATAAAATAAAAATACA
Found at i:1741815 original size:18 final size:17
Alignment explanation
Indices: 1741768--1741924 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 17
1741758 TATAGAATAA
1741768 AAAAAT-AAAAATAAA-
1 AAAAATAAAAAATAAAT
* *
1741783 AATATATAATTAAATAAAT
1 AA-AAATAA-AAAATAAAT
1741802 AAAAATACAAAAATAAAT
1 AAAAATA-AAAAATAAAT
1741820 -AAAATAAAAAAT-AAT
1 AAAAATAAAAAATAAAT
* * *
1741835 AAAAA-AATATATATTATT
1 AAAAATAA-A-AAATAAAT
*
1741853 AATAATAAATAAATAAAT
1 AAAAATAAA-AAATAAAT
* *
1741871 AATAAATACATAGGATATACAT
1 AA-AAATA-A-A--AAATAAAT
*
1741893 -AAAATATAAAATAAAAT
1 AAAAATAAAAAAT-AAAT
1741910 AAAAAT-AAAAATAAA
1 AAAAATAAAAAATAAA
1741925 AATGACAAAG
Statistics
Matches: 108, Mismatches: 18, Indels: 31
0.69 0.11 0.20
Matches are distributed among these distances:
15 7 0.06
16 20 0.19
17 18 0.17
18 40 0.37
19 9 0.08
20 6 0.06
21 2 0.02
22 6 0.06
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (17 bp):
AAAAATAAAAAATAAAT
Found at i:1741859 original size:27 final size:27
Alignment explanation
Indices: 1741770--1741871 Score: 91
Period size: 28 Copynumber: 3.7 Consensus size: 27
1741760 TAGAATAAAA
*
1741770 AAATAAAAATAAAAATATATA-ATTAAAT
1 AAATAAAAATAAAAAAATATATATT--AT
* * **
1741798 AAATAAAAATACAAAAATAAATAAAAT
1 AAATAAAAATAAAAAAATATATATTAT
1741825 AAA-AAATAATAAAAAAATATATATTAT
1 AAATAAA-AATAAAAAAATATATATTAT
* *
1741852 TAATAATAAATAAATAAATA
1 AAATAA-AAATAAAAAAATA
1741872 ATAAATACAT
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 23 0.39
28 31 0.53
29 2 0.03
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (27 bp):
AAATAAAAATAAAAAAATATATATTAT
Found at i:1741863 original size:55 final size:56
Alignment explanation
Indices: 1741767--1741876 Score: 138
Period size: 54 Copynumber: 2.0 Consensus size: 56
1741757 TTATAGAATA
1741767 AAAAAATAAAAATAAAAATATATAATTAAATAAATAAAAATACAA-AAATAAATAAAAT
1 AAAAAATAAAAATAAAAATATATAATT-AATAAATAAAAATA-AATAAAT-AATAAAAT
* *
1741825 AAAAAATAATAA-AAAAATATAT-ATT-ATTAATAATAAATAAATAAATAATAAA
1 AAAAAATAAAAATAAAAATATATAATTAATAAATAA-AAATAAATAAATAATAAA
1741877 TACATAGGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
54 15 0.31
55 9 0.19
56 3 0.06
57 10 0.21
58 11 0.23
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (56 bp):
AAAAAATAAAAATAAAAATATATAATTAATAAATAAAAATAAATAAATAATAAAAT
Found at i:1741875 original size:58 final size:57
Alignment explanation
Indices: 1741697--1741878 Score: 140
Period size: 59 Copynumber: 3.1 Consensus size: 57
1741687 CAGCCCTCCA
* * * * * *
1741697 AAATAAAAATCAAATAAATAAAAA-AATAATAGATAATTAGA-AAAGATAATAAAAAAATT
1 AAAT-AAAAT-AAA-AAATAAAAATAAAAATATATAATTAAATAAATAAAATACAAAAA-T
* *
1741756 ATTATAGAATAAAAAAATAAAAATAAAAATATATAATTAAATAAATAAAAATACAAAAAT
1 A-AATAAAAT-AAAAAATAAAAATAAAAATATATAATTAAATAAAT-AAAATACAAAAAT
* *
1741816 AAATAAAATAAAAAATAATAAA-AAAATATATATTATTAATAATAAAT-AAATA-AATAAT
1 AAATAAAATAAAAAATAA-AAATAAAA-ATATATAATT-A-AATAAATAAAATACAAAAAT
1741874 AAATA
1 AAATA
1741879 CATAGGATAT
Statistics
Matches: 102, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
58 32 0.31
59 45 0.44
60 8 0.08
61 17 0.17
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.25
Consensus pattern (57 bp):
AAATAAAATAAAAAATAAAAATAAAAATATATAATTAAATAAATAAAATACAAAAAT
Found at i:1741908 original size:12 final size:12
Alignment explanation
Indices: 1741891--1741925 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
1741881 TAGGATATAC
1741891 ATAAAATATAAA
1 ATAAAATATAAA
1741903 ATAAAATA-AAA
1 ATAAAATATAAA
1741914 ATAAAA-ATAAA
1 ATAAAATATAAA
1741925 A
1 A
1741926 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:1741914 original size:73 final size:70
Alignment explanation
Indices: 1741783--1741916 Score: 173
Period size: 73 Copynumber: 1.9 Consensus size: 70
1741773 TAAAAATAAA
*
1741783 AATATATAATTAAATAAATAAAAATACAAAAATAAATAAAATAAAAAATAATAAAAAAATATATA
1 AATATATAAATAAATAAATAAAAATACAAAAATAAATAAAATAAAAAATAATAAAAAAATATATA
1741848 TTATT
66 TTATT
* * *
1741853 AATA-ATAAATAAATAAATAATAAATACATAGGATATACATAAAATATAAAATAA-AATAAAAAT
1 AATATATAAATAAATAAATAA-AAATACA-A--AAATAAATAAAATAAAAAATAATAA-AAAAAT
1741916 A
61 A
1741917 AAAATAAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
69 15 0.27
70 11 0.20
71 1 0.02
72 2 0.04
73 26 0.47
ACGTcount: A:0.69, C:0.02, G:0.01, T:0.27
Consensus pattern (70 bp):
AATATATAAATAAATAAATAAAAATACAAAAATAAATAAAATAAAAAATAATAAAAAAATATATA
TTATT
Found at i:1741926 original size:12 final size:12
Alignment explanation
Indices: 1741768--1741927 Score: 60
Period size: 12 Copynumber: 12.5 Consensus size: 12
1741758 TATAGAATAA
1741768 AAAAATAAAAAT
1 AAAAATAAAAAT
*
1741780 AAAAATATATAATT
1 AAAAATA-A-AAAT
1741794 AAATAAATAAAAAT
1 -AA-AAATAAAAAT
*
1741808 ACAAAA-ATAAAT
1 A-AAAATAAAAAT
1741820 -AAAATAAAAAAT
1 AAAAAT-AAAAAT
*
1741832 AATAA-AAAAAT
1 AAAAATAAAAAT
* * **
1741843 ATATATTATTAAT
1 A-AAAATAAAAAT
1741856 AATAAATAAATAAAT
1 AA-AAAT-AA-AAAT
*
1741871 AATAAATACATAGGAT
1 AA-AAATA-A-A-AAT
* *
1741887 ATACAT-AAAAT
1 AAAAATAAAAAT
1741898 ATAAAAT-AAAAT
1 A-AAAATAAAAAT
1741910 AAAAATAAAAAT
1 AAAAATAAAAAT
1741922 AAAAAT
1 AAAAAT
1741928 GACAAAGATA
Statistics
Matches: 113, Mismatches: 18, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
10 4 0.04
11 15 0.13
12 42 0.37
13 16 0.14
14 9 0.08
15 19 0.17
16 8 0.07
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:1742301 original size:26 final size:26
Alignment explanation
Indices: 1742265--1742317 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1742255 GTTGACTTAG
1742265 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
1742291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1742317 G
1 G
1742318 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1743666 original size:715 final size:706
Alignment explanation
Indices: 1742291--1743755 Score: 2239
Period size: 715 Copynumber: 2.1 Consensus size: 706
1742281 CCCAGCCTAA
* *
1742291 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATGCAGGG
* * * *
1742356 CTTCGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTTGCCAGAGA
66 CTTCGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCAGAGA
* * *
1742421 ACATGACCGACGGCATCGGGGTTCCGGTGACCGGGGGGGTCGGGAGGTGTGCGCACAAGATGTGC
131 ACATAACCGACGGCATCGGGGTTCCGGCGACCGGGGGGGCCGGGAGGTGTGCGCACAAGATGTGC
* *
1742486 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
*
1742551 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * *
1742616 GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGATTTTGT
326 GGGACACTTTAATCAAATGGACACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGATTTTGT
1742681 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
1742746 TTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
* *
1742811 CCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATGAAAATGGCAT
521 CCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCAT
* * * * * *
1742876 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
586 TGGCACGCAAAAATATGAAGAAGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGCGC
* *
1742941 ATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTTGTTGGTTGGCTTAG
651 ATCCCGTCTCTCTGACCGACGTAGT----G--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * *
1743005 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATGCAGGG
* * **
1743070 C-TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATTAGGGCACCATCGTCGGAGCATCGCTGGAG
66 CTTC-GGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCAGAG
* * * * * * *
1743134 AACCTAATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACATAACCGACGGCATCGGGGTTCCGGCGACCGGGGGGGCC-GGGAGGTGTGCGCACAAGATGT
* * *
1743199 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCTAAGCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCA
1743264 CACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1743329 TGGGGACACTTTAATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGTTTTT
324 TGGGGACACTTTAATCAAATGGACACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGATTTT
* *
1743394 GTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCGAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
1743459 AATTTTAGAAAATCTCGAACTATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
1743524 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGC
519 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGC
* * * *
1743589 ATTGGCATGCAAAAATATGAAGAAGTGCGGAAACCCACGTACCACCCAATTGATCCACGGCTTGC
584 ATTGGCACGCAAAAATATGAAGAAGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGC
* * * * *
1743654 GCGTCGCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
649 GCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
1743712 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
1743756 TATATGGCAG
Statistics
Matches: 680, Mismatches: 69, Indels: 11
0.89 0.09 0.01
Matches are distributed among these distances:
707 67 0.10
709 1 0.00
711 1 0.00
713 2 0.00
714 145 0.21
715 464 0.68
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATGCAGGG
CTTCGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCAGAGA
ACATAACCGACGGCATCGGGGTTCCGGCGACCGGGGGGGCCGGGAGGTGTGCGCACAAGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTAATCAAATGGACACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATGATTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCAT
TGGCACGCAAAAATATGAAGAAGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:1744783 original size:26 final size:26
Alignment explanation
Indices: 1744747--1744800 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
1744737 TGGGTTGACT
1744747 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
1744773 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
1744799 TA
1 TA
1744801 AGATTGGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:1746555 original size:26 final size:26
Alignment explanation
Indices: 1746526--1746578 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1746516 GTTGACTTAG
1746526 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
* *
1746552 GCATACAGAGTTCATTCTCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1746578 G
1 G
1746579 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1748939 original size:711 final size:708
Alignment explanation
Indices: 1747391--1749412 Score: 2940
Period size: 711 Copynumber: 2.8 Consensus size: 708
1747381 GGGCTACGGT
** * *
1747391 AGCACATAATGGGCTCGGGCATGTGCTGGGGCCGTAATTTTCTTCGTCGGGGCACCTTCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCA-C--CATC-GA
* *
1747456 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGCC-GGGGGTGTGCG
62 -CAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCG
* * *
1747520 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCCCATCAACCCT
123 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
1747585 CGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
188 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
1747650 GTGTCTAAAATGGGGAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
253 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCT
* *
1747715 GAATTGTTTTCTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCC
317 GAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCC
* *
1747780 TTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
382 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
* * *
1747845 GAGTCGTCTTGCCTTCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCAT
447 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
1747910 AAAAATGGCATTGGCATC-CAAAAATCTGAAGATGTTCCTAAACCCACCTACCACCCTATCGATC
512 AAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ****
1747974 CACGGCTTGCGCATCCCGTCTCTCTGACCGGTGTAGTGTTTGCCTGCCAGCCCGCCCGCTCATTT
576 CACGACTTGCGCATCCCATCTCTCTGACCGGTATAATGCCACCCTGCCAGCCCGCCCGCTCATTT
* * * *
1748039 CGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGTCGAGGGTTTGT
641 CGTCGGTTGGCTGAGGCATACGGACTTCATTCCCAATCTAAGATCAGATCAGGTCGAGGGTTTGC
*
1748104 GGC
706 AGC
** *
1748107 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCA---TC-GA
* *
1748172 GCATTGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC----GG--GGTGGGTGTGCG
62 -CA-T-C-GGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCG
*
1748231 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCT
123 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
1748296 CGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
188 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
1748361 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
253 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCT
* * * * *
1748426 AAATTTTTTTGTGCGTGCCAA-AAAAATACAAGGATCAGGTCTACCACGTTTGGGGCCAAAAATC
317 GAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATC
* * **
1748490 CTTCCGAAAAAATTTGAAAAAATCCCGAACCGCAGAAAGTTTTGAAAATTATGAAAAATAGAAAA
381 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
*
1748555 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCA
446 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
1748620 TAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATC
511 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
1748685 CACGACTCGCGCATCCCATCTCTCTGGCTGTTATAATGCCCACCCGTCCGCCTGCCCGTCCGCTC
576 CACGACTTGCGCATCCCATCTCTCTGACCGGTATAATG-CCACCC-T--GCCAGCCCGCCCGCTC
* *
1748750 GTTTCGTCGGTTGGCTTAGGCATACGGAACTTCATTCCCAATCTAAGATCAGAT-AGGATCGAGG
637 ATTTCGTCGGTTGGCTGAGGCATACGG-ACTTCATTCCCAATCTAAGATCAGATCAGG-TCGAGG
1748814 G-TTGCAGC
700 GTTTGCAGC
*
1748822 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGTGCACCATC-A-A-C
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGACATC
1748884 GGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCCGGGGGGTGTGCGCACATGA
66 GGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG-CCGGGGGGTGTGCGCACATGA
* * *
1748949 TTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAAC
130 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1749014 TCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTG
195 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1749079 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTACTTTTTTAGCTGAA-TTT
260 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGA-GTTTTTAGCTGAATTTT
* *
1749143 TTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGA
324 TTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGA
* * **
1749208 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
388 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
*
1749273 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1749338 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGACT
518 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
1749403 TGCGCATCCC
583 TGCGCATCCC
1749413 GTCAATCTGG
Statistics
Matches: 1178, Mismatches: 104, Indels: 53
0.88 0.08 0.04
Matches are distributed among these distances:
704 36 0.03
705 1 0.00
708 3 0.00
710 48 0.04
711 860 0.73
712 6 0.01
713 3 0.00
715 102 0.09
716 118 0.10
717 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGACATC
GGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTT
TGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
GCATCCCATCTCTCTGACCGGTATAATGCCACCCTGCCAGCCCGCCCGCTCATTTCGTCGGTTGG
CTGAGGCATACGGACTTCATTCCCAATCTAAGATCAGATCAGGTCGAGGGTTTGCAGC
Found at i:1749659 original size:26 final size:26
Alignment explanation
Indices: 1749623--1749675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1749613 GTTGACTTAG
1749623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1749649 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1749675 G
1 G
1749676 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1750557 original size:26 final size:26
Alignment explanation
Indices: 1750521--1750572 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1750511 TTGACTTAGA
*
1750521 CATACGGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
*
1750547 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
1750573 ATCGGACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:1750650 original size:897 final size:887
Alignment explanation
Indices: 1748780--1753253 Score: 5873
Period size: 888 Copynumber: 5.1 Consensus size: 887
1748770 CATACGGAAC
* ** * *
1748780 TTCATTCCCAATCTAAGATCAGATAGGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * **
1748845 TGCTGGTGCCGTAATTTTCTTCGTCGGTGCACCATCAACGGAGAACCTGACCGACGGCATTGGGG
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * ** *
1748910 TTCCGATGATCGGGGGGCCCGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCC
131 TTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
1748975 CTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
1749040 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
1749105 CACAAAATCTTGTACACTTT-ACTTTTTTAGCTGAA-TTTTTTGTACATGCCAACAAAAATACAA
326 CACAAAATCTTGTACACTTTGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
1749168 GGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACC
390 GGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC-GAACC
1749232 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
453 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
1749297 GGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
518 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * **
1749362 GATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTGCGCATCCCGTCAATCTGGCCGA
583 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
1749427 CGTA---A------TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
648 CGTAGTGACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * * * * *
1749483 AGTCTAAGATTGGATCGAATCAAGGGTTGCAGTAGCAGGATTGGTAGCATGCAGAGGGGGACCCG
713 AGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
1749548 GTCGATCCCTGGCTTGCACGTCTCGCCCCTCTGGCCGGCTGAGCATCCGCACGTTCGTTTCGTGG
778 ATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCA-CCGCACGCTCGTTTCGTGG
* *
1749613 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAG
842 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
* * * *
1749659 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATT
1 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
1749724 TGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGAACCTGACCGACGGCATTGGGG
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGG
*
1749789 TTTCGACGATTGGGGGGGTCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
131 TTCCGACGATTGGGGGGGTCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
1749854 CCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
1749919 GATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * * *
1749984 TGACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTTTTTGCGTGCCAAAAAAAATTCA
325 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACA
*
1750049 AGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACC
389 AGGATCATGTCTACCAAGTTTGGG-CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACC
* * * *
1750114 GCAAAAA-TTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTACCATGAAACTTCACGTGAA
453 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
1750178 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATCAA
518 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * *
1750243 GATGTGCCTAAACCCACGTACCACCCTATCGATCAACGGCTTGCGTATCCCGTCTCTCTGGCCGA
583 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* *
1750308 CGTAGTGTCCACCCGCCCGCCCGCCCGCCTTCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTT
648 CGTAGTG---ACCCGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
1750373 CATTCCCAGTTTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCCCGTAGAGGG
706 CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
1750438 GGACCC-AGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGTTGAGCGACCACACGCTCG
771 GGACCCGA-TCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGC-ACCGCACGCTCG
*
1750502 TTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAATCTAAGCATACAGAG
834 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
* *
1750556 TTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
1750621 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGGAGAACCTGACCGGCGGAATTGGTG
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * *
1750686 TTCCGGCGA-TCGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
131 TTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
1750750 ATTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCTTTTAAG
196 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
1750815 ATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
261 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
1750880 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAACAAAAATACAA
326 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAA
* * **
1750945 GGATCATGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTAAAAAAATCTTAAACC
390 GGATCATGTCTACCAAGTTT-GGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCTCGAACC
* * * * * * *
1751009 GTAAAACGTTTCAAAACTCATGAAAAATAGAAAACGAGTCATCTTGACTTGAAACTTCACATGAA
453 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
1751074 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TTCA-AGAATATG
518 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT-AGA-AATATG
* * * * *
1751137 AAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTACGCATCTCATTTCTCTGGCC
581 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * * *
1751202 AACATAATG-CCCACCCGCCCCCCCGCACGTTTCGTCAGTCGGCTTAGGCATACGGAGTTCACTC
646 GACGTAGTGACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * * *
1751266 CCAGTCTAAAATCAGACTGGA-CTGAGGGTTGTTGCAGCAAGATTGGCGGCACGTAGAGGGGGAC
711 CCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
** * * *
1751330 CCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCA
775 CCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGC-ACCGCACGCTCGTTTCG
1751395 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAA--T---C-T--A-AG
839 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
* *
1751435 ---A-T--C-G-----GATC-GA----ACCGAGGGTTGCGGCAGCAAAT-CTTGGGCTCGAGCAT
1 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCAT
* *
1751482 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGAAGAACCTGACCG
65 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC---G---C--CGGAGAACCTGACCG
* ** * *
1751547 ACGGCATTGGGGTTTCGACGATTGGGGGGCCGGGGGAGGGGTGTGCGCACACGATGTGTGATGGG
119 ACGGCATTGGGGTTCCGACGATTGGGGGG--GTCGG-GGGGTGTGCGCACATGATGTGCGATGGG
1751612 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
181 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
1751677 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
246 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
1751742 CTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTCTTTTGTGCATGC
311 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
1751807 CAAGAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAA-TGCCTTTCAAAAAAAGTTTA
376 CAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACT-CCTTTCGAAAAAATTTTA
* *
1751871 AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
439 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
1751936 AAACTTCACGTGAAGGCTCAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
504 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
1752001 TGCT-GTAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCC
569 CG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
1752065 CGTCTCTCTGACCGGCATAGTG-CCCGCCTGCCCGCCCACTCATTTCGTCTGTTGGCTTAGGCAT
633 CGTCTCTCTGGCCGACGTAGTGACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
1752129 ACGGAGTTCATTCCCAGTCTAAGAGCAGACTGGATCGAGGGTTGTGGCAGCTGGATCGGCAGCAC
698 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * *
1752194 GCAGAGGGGGACCCGACCGATCCCCGGCTTACACATCGCGCCCCTTTGGCCGGTTGAGCACCCGT
763 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCA-CCGC
* * *
1752259 AAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATA-GGAG
827 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
*
1752319 TTCATTCCC-GATCTAAGATCAGACCGGACTC-AGGGTTGCGGCAGCACATGCTGGGATCGGGCA
1 TTCATTCCCAG-TCTAAGATCAGACCGGAC-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** *
1752382 TGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACTGACGGCATTGG
64 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGG
* * * *
1752447 GGTTCCGGA-GA-TCGGGGGGTCGGGGGGCGTGTGCACACATGATGTGCGATGGGTGTTGGGACT
129 GGTTCC-GACGATTGGGGGGGTC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
1752510 TGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCAAGGACTCACACCTCTTTAAAGAGCAT
191 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* *
1752575 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACATTTTTTTCAA
256 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
1752640 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TCGAATTGTTTTGTGCATGCCAACAAAAA
321 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
1752704 TACAAGGATCGTATCTACCATGTTCAGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCC
385 TACAAGGATCATGTCTACCAAGTT-TGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCTC
* *
1752768 GAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
448 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * * *
1752833 GTGAAGGCTTAAGGGAGCATTGTATGAATTTAGAAGCCATGAAAAGGGCATTGGCATGCAGAAAT
513 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * * * *
1752898 ATGAAGATGTGCCCAATCCCACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTG
578 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
** * *
1752963 GCCGGTGTAGTG-CCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTCAGGCATACGGAGTTCA
643 GCCGACGTAGTGACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
1753027 TTCCCAGT-TGAAGATCAGATCGGAAT-GATGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGG
708 TTCCCAGTCT-AAGATCAGACCGG-ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
1753090 GGACCCGATCAATCCCCGGCTTGCACATCCCGTCCCTCTGGCCGGCTGAGCACCCGCACGTTCAT
771 GGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCA-CCGCACGCTCGT
* * * *
1753155 TTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCGTACGGAG
835 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
* *
1753208 TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCA
1 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
1753254 TCGTCGGAGC
Statistics
Matches: 3160, Mismatches: 342, Indels: 176
0.86 0.09 0.05
Matches are distributed among these distances:
861 1 0.00
862 64 0.02
863 1 0.00
865 4 0.00
866 2 0.00
867 4 0.00
871 1 0.00
872 1 0.00
873 31 0.01
874 6 0.00
875 1 0.00
876 451 0.14
877 197 0.06
878 2 0.00
879 132 0.04
880 200 0.06
881 184 0.06
882 87 0.03
883 2 0.00
884 2 0.00
886 1 0.00
887 12 0.00
888 815 0.26
889 54 0.02
890 33 0.01
891 2 0.00
892 15 0.00
893 9 0.00
894 1 0.00
895 279 0.09
896 188 0.06
897 312 0.10
898 5 0.00
900 1 0.00
901 58 0.02
902 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCATTGGGG
TTCCGACGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCATGTCTACCAAGTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC
GATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCACCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
Found at i:1752820 original size:888 final size:887
Alignment explanation
Indices: 1751408--1754487 Score: 3082
Period size: 888 Copynumber: 3.5 Consensus size: 887
1751398 GTTGACTTAG
* * * * *
1751408 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAAATCTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATC-TGGG
* ** *
1751473 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGAAGA
65 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCA-C--CATC---G--TC--CGGAGA
* * *
1751538 ACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCCGGGGGAGGGGTGTGCGCACACGATG
120 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGG-C-GGGG-GGCGTGTGCGCACATGATG
*
1751603 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
1751668 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1751733 ATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTCTTT
311 ATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *** * **
1751798 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAA-TGCCTTTCAAA
376 TGTGCATGCCAACAAAAATACAAGGATCGTATCTACCAAGTTCAGGGCCAAAACT-CCTTTCAAA
* * * *
1751862 AAAAGTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
440 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
* *
1751927 CTTGCCATGAAACTTCACGTGAAGGCTCAAGCGACCATTGTATGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1751992 GCATTGGTATGCTGTAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
570 GCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1752057 GCGCATCCCGTCTCTCTGACCGGCATAGTGCCCGCCTGCCCGCCCACTCATTTCGTCTGTTGGCT
635 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCT
* * *
1752122 TAGGCATACGGAGTTCATTCCCAGTCTAAGAGCAGA-CTGGATCGAGGGTTGTGGCAGCTGGATC
700 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGATGGTTGTGGCAGCAGGATC
* * *
1752186 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACACATCGCGCCCCTTTGGCCGGTTGA
764 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCGCGCCCCTCTGGCCGGCTGA
* * *
1752251 GCACCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
829 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
1752310 GCATA-GGAGTTCATTCCC-GATCTAAGATCAGACCGGACTC-AGGGTTGCGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGAC-CGAGGGTTGCGGCAGCACAT-CTG
* * * *
1752372 GGATCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CCGGAGAACCTGACT
63 GGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCCGGAGAACCTGACC
* *
1752436 GACGGCATTGGGGTTCCGGA-GATCGGGGGGTCGGGGGGCGTGTGCACACATGATGTGCGATGGG
128 GACGGCATTGGGGTTTC-GACGATCGGGGGG-CGGGGGGCGTGTGCGCACATGATGTGCGATGGG
* * * *
1752500 TGTTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCAAGGACTCACACCTCTT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC-CTT
1752565 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACA
255 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACA
* *
1752630 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TCGAATTGTTTTGTGCATG
320 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATG
* *
1752694 CCAACAAAAATACAAGGATCGTATCTACCATGTTCAGGGCCAAAACTCC-TTCTGAAAAAATTTT
384 CCAACAAAAATACAAGGATCGTATCTACCAAGTTCAGGGCCAAAACTCCTTTC-AAAAAAATTTT
* *
1752758 AAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
448 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * * *
1752823 GAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTAGAAGCCATGAAAAGGGCATTGGC
513 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
1752888 ATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCCTATCAATCCACGACTTACGCATCC
578 ATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
1752953 CGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GATTGGCTCAGGCAT
643 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTG-TTGGCTTAGGCAT
* * *
1753017 ACGGAGTTCATTCCCAGT-TGAAGATCAGATCGGAAT-GATGGTTGCGGCAACAAGATCGGCAGC
707 ACGGAGTTCATTCCCAGTCT-AAGATCAGATCGG-ATCGATGGTTGTGGCAGCAGGATCGGCAGC
* * * *
1753080 ACGCAGAGGGGGACCCGATCAATCCCCGGCTTGCACATCCCGTCCCTCTGGCCGGCTGAGCACCC
770 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCGCGCCCCTCTGGCCGGCTGAGCACCC
* * * *
1753145 GCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
835 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1753198 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAG--CATC---G-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATCTGGGC
**** * * * * **
1753257 TCGGAGCAT-CACCGGAG--A-A-----CTTGACCGGTGG---TAT--T--GGGGTTCC-G---G
66 TC-GAGCATGTGTTGGTGCCACATTTTTCTTCACCGG-GGCACCATCGTCCGGAGAACCTGACCG
* ** * * ** * *
1753302 A--G-ATCGGGG----G-C--TCGGGGGGCGTGTGCGCACATGATGTGC-GGTGGTTGTTGGGAC
129 ACGGCATTGGGGTTTCGACGATCGGGGGGCG-G-G-GGGCGTG-TGCGCACAT-GATG-TGCGA-
* ** ** * * ***
1753356 TTGGCCCTTATA-TTGGCCAC--CTA-T--CCCTC-ATCAACC-C-TCGAGAA-CTCACACCCCC
187 TGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATC--CCTCATC-A-AACCTCA-A-GAAC
* * * * * * * * * *** *
1753411 TTAAAGAGCATTT---GAG-ATTTTATAGGTTTGC-TGCCAG-TAGCCATTAAAGCGTC-TTAAA
245 -T-CACACCCTTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCT-GCCAGT--AGC--CATTAAA
** * ** ** **** ** *
1753469 -TG-GGGACACTTTTTTCAAAAGGTCACAAAATCTTGT-AC---A-C-T-T-CA-----AGTTTT
302 GTGTCTGA-AATGGTGAC-ACTTTTTTC-AAA--TGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * * *
1753519 AAGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC-AAGTCTACCAAGTT-TGGACCC
362 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTA-TCTACCAAGTTCAGG-GCC
*
1753582 AAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
425 AAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
1753647 TAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGGATGAATTTA
490 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* ***
1753712 CAAGCCATAAAAATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCTGTCTACCACCC
555 CAAGCCATAAAAATGGCATTGGCATGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * *
1753776 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGACGTAATGCCCGCCCGCCCGCCCGTCC
619 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCG--C--CC
* ** *
1753841 GCCCGCTCACTTCGT-TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGA
676 GCCCGCTCATTTCGTCT-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGG
* * * * * ** * **
1753905 ACCGATGGTTGTAGCAGCAGGATCGGTAGCACGTAGAGGGGGACTCTTCCGATCCCCGACTTGTG
740 ATCGATGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCA
* **
1753970 CAT-GCCGCCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
805 CATCG-CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
*
1754034 GAGTTCATTCCTAGTCTAA
869 GAGTTCATTCCCAGTCTAA
* ** *
1754053 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGAAAGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT-CTGGG
* ** *
1754118 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCTTCGT-CGGAGAACCTGACCGA
65 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCCGGAGAACCTGACCGA
* * *
1754182 CGGCATTAGGGTTTCGACGATCGGGGGGCCGGGGGC-TGTGCGCACGTGATGTGCGATGGGTGCT
130 CGGCATTGGGGTTTCGACGATCGGGGGGCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCT
* * **
1754246 GGTACTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCT-TTAAA
* *
1754311 GAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGG-GACACTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGTGACACTT
1754375 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1754440 CAAAAATACAGGGATCGTATCTACCAAGTTCAGGGCCAAAACT-CTTTC
388 CAAAAATACAAGGATCGTATCTACCAAGTTCAGGGCCAAAACTCCTTTC
1754488 TGAAAACCCA
Statistics
Matches: 1749, Mismatches: 292, Indels: 282
0.75 0.13 0.12
Matches are distributed among these distances:
846 3 0.00
847 262 0.15
848 5 0.00
849 1 0.00
851 9 0.01
852 2 0.00
853 3 0.00
854 22 0.01
855 251 0.14
856 17 0.01
857 19 0.01
858 17 0.01
859 15 0.01
860 9 0.01
861 7 0.00
862 11 0.01
863 1 0.00
864 1 0.00
865 3 0.00
868 1 0.00
869 7 0.00
870 6 0.00
872 3 0.00
874 9 0.01
875 7 0.00
876 1 0.00
879 3 0.00
881 1 0.00
882 21 0.01
883 22 0.01
884 16 0.01
885 14 0.01
886 17 0.01
887 30 0.02
888 660 0.38
889 61 0.03
890 41 0.02
891 2 0.00
892 1 0.00
894 5 0.00
895 64 0.04
896 3 0.00
898 4 0.00
900 1 0.00
901 84 0.05
902 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATCTGGGC
TCGAGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCCGGAGAACCTGACCGAC
GGCATTGGGGTTTCGACGATCGGGGGGCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCGTATCTACCAAGTTCAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC
CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCTGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGATCGGATCGATGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGACCGATCCCCGGCTTGCACATCGCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1753214 original size:26 final size:26
Alignment explanation
Indices: 1753175--1753224 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1753165 GACTTAGGCA
*
1753175 TACGGAGTTTATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
1753201 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1753225 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:1754063 original size:26 final size:26
Alignment explanation
Indices: 1754027--1754079 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1754017 GTTGACTTAG
*
1754027 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1754053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1754079 G
1 G
1754080 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1755669 original size:26 final size:26
Alignment explanation
Indices: 1755632--1755684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1755622 GTTGACTTAG
*
1755632 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1755658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1755684 G
1 G
1755685 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1756262 original size:891 final size:893
Alignment explanation
Indices: 1754762--1757235 Score: 3300
Period size: 891 Copynumber: 2.7 Consensus size: 893
1754752 TAGGCATATG
* * *** *
1754762 GAGTTCATTCCAAGTCTAAGATCAGATTGGACCGAGGGTTGCGACAGCACATGCTGGGCTC-AGG
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGA-G
* * * *** * ** *
1754826 CATGTGCTAGTGTCACATTTTTCTTCGTTGGGGCACCATCGCTGGAGCATTGCCGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA---CT----CA-ACCCGGAGAACCTAA
* * * *
1754891 CTGGCAGCATTGGGGTTCCGGAGATCGGGGGGGTCGGGGGGGTGTCCGCGCATGATGTGCGATGG
122 CCGACGGCATTGGGGTTCC-GAGATCGGGGGGG-CGGGGGGGTGTGCGCGCATGATGTGCGATGG
* * * * *
1754956 GTGCTGG-GACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAACCCTCAAGAACTCACACCTC
185 GTGCTGGTG-CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCAC
* * *
1755020 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGA
249 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1755085 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTCCAT
314 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-
1755150 A-CCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
378 AGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
1755214 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCA
443 TAAAAAAT-CCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
1755279 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
507 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
1755344 TAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACAT-
572 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATC
* * *
1755408 TCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGTCT-GCCCACTCGTTTCGTCGGTTGGCTTA
637 CCCTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-TCTCGCCCACTCGTTTCGTCGGTTGGCTTA
* *
1755472 GGCAGATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGT-GGTAGCAAGATCG
701 GGCAGATGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACTGAGGATT-TCGGTAGCAAGATCG
* * *
1755535 ACAGCACGTAGAGAGGGACCCGACCGAT-CCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGA
764 ACAGCACGCAGAGAGGGACCCGACCAATCCCT-GGCTTGCACATCCCACCCCTCTGGCCGACTGA
* * * *
1755599 GCGCCCGCGCGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATAC
828 GCGCCCGCACACTCATTCCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
*
1755664 G
893 A
* ** *
1755665 GAGTTCATTCCCAGTCTAAGATCAAACCAGTCCGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGC
** * *
1755730 ATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCA-TC-A-CCGGCGAACCTAACCGACGGTA
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCACTCAACCCGGAGAACCTAACCGACGGCA
* * *
1755792 TTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTGC
131 TTGGGGTTCCGA-GATCGGGGGGGCGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTGC
* *
1755857 TTGGCCCTTATATTGGCCACTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCA
* *
1755922 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGAGACTTTTTTCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
1755987 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAA
* * * * * * *
1756052 TACAAGGATCATGACTACCATGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTGAAAAAATCTCA
390 TACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CG
*
1756117 AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
454 AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
* * *
1756182 TGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATA
519 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * *
1756247 TAAAGATGGGCCTAAACCCACCTACC-CCTCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTG
584 TGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACAGCTTGCACATCCCCTCTCTCTG
* * * * * * * *
1756311 GCCGACGTAGTTCCCGCCCGCGCTTTCGCTCGCTCGTTTCTTTGGTTGGCTTAGGCATATGGAGT
648 GCCGACGTAGTGCCCGCCCGCCCTCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGATGGAGT
* * * * *
1756376 TCATTCCTAGTCTAAGATCGGATCAGACTGAGGATTTCGGTAGCAGGATCGGCAGCACGCAGAGG
713 TCATTCCCAGTCTAAGATCAGATCAGACTGAGGATTTCGGTAGCAAGATCGACAGCACGCAGAGA
* ** * * *
1756441 GGGACCCTACCAATCCCTGGCTTGCACATCCTTCCCCTCTGGTCGGCTGAGCGCCCGCACACTCG
778 GGGACCCGACCAATCCCTGGCTTGCACATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCA
* * *
1756506 TTTCGTGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACA
843 TTCCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
** * * *
1756557 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGC
* *
1756622 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGTATCGCCGGAGAACCTAAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA-C-TC--A--A-C-CCGGAGAACCTAAC
* * * * *
1756687 CGACGGCATTGGGGTTCCAACGATCGTGGGGACGGGGGGGTGTGCGCGCATGATGTGTGTTGGGT
123 CGACGGCATTGGGGTTCCGA-GATCGGGGGGGCGGGGGGGTGTGCGCGCATGATGTGCGATGGGT
** *
1756752 GCTAATACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAACCTCGAGAACTCACACCACCT
187 GCTGGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATC-AAACCTCGAGAACTCACACCACCT
* * *
1756817 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCACTAAAGTGTCAGAAATGGGGACA
251 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
1756882 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTTGCAT
316 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCAA
* * * *
1756947 GCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAGTTTT
379 GCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* **
1757012 CAAAAATCCTGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
444 AAAAAATCC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
1757077 GAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACACGCCATAGAAATGGCATTGGC
508 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** *
1757142 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCAATCCATGGCTTGCGCATCC
573 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCC
* * *
1757207 CGTCTCTATGGCTTG-CGTAGTGCCCGCCC
638 CCTCTCTCTGGC-CGACGTAGTGCCCGCCC
1757236 TATCGATCCC
Statistics
Matches: 1382, Mismatches: 161, Indels: 53
0.87 0.10 0.03
Matches are distributed among these distances:
890 4 0.00
891 443 0.32
892 338 0.24
893 4 0.00
895 3 0.00
899 1 0.00
900 1 0.00
903 188 0.14
904 133 0.10
905 1 0.00
906 264 0.19
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCACTCAACCCGGAGAACCTAACCGACGGCA
TTGGGGTTCCGAGATCGGGGGGGCGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTGCT
TGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAAT
ACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAA
CCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCCTCTCTCTGGCC
GACGTAGTGCCCGCCCGCCCTCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGATGGAGTTCA
TTCCCAGTCTAAGATCAGATCAGACTGAGGATTTCGGTAGCAAGATCGACAGCACGCAGAGAGGG
ACCCGACCAATCCCTGGCTTGCACATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCATTC
CGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
Found at i:1757348 original size:26 final size:26
Alignment explanation
Indices: 1757312--1757386 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
1757302 GTTGACTTAG
1757312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1757338 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1757364 GCATACAGAGTTCATTCTCAGTC
1 GCATACGGAGTTCATTCCCAGTC
1757387 AAAGATCAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1758278 original size:26 final size:26
Alignment explanation
Indices: 1758241--1758293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1758231 GTTGACTTAG
*
1758241 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1758267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1758293 G
1 G
1758294 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1759095 original size:905 final size:896
Alignment explanation
Indices: 1757338--1760157 Score: 3825
Period size: 905 Copynumber: 3.1 Consensus size: 896
1757328 CCCAGTCTAA
* * * * * * *
1757338 GCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCTCAGTCAAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* * *
1757403 CGAAGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG
66 CGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG-GG
* * *
1757468 CACTATTGCCAAAGCATCGTCGGAGAACCTGACCGACGACTTTGGGGTTCCGACGATCAGAAGGG
130 CACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATC-GGAGGG
* ** *
1757533 TCGGGGGGGTGTGCGCACAT-ATGTGTAATGGGTGCTGGTACATGGCCCATATATTGGGCCCCTA
193 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATT-GGCCCCTA
* *
1757597 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
257 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1757662 CCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1757727 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
1757792 TTGCAGCCAATACTCCTTCTGAAAAAATTTTAAAAAATACCAAATCGCAAAAAGTTTCAAAAATC
452 TTGCAGCCAA-ACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAATC
*
1757857 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGTGACCATTGTA
516 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTA
* * *
1757922 TGAATTTACAATCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATCTACCTAAACCCACCT
581 TGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
1757987 ACCACCCGATCTATCCACAGCTTGCGCATCCAGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCGG
646 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCG
* * *
1758052 CCCGCCCGCTCGTTTCGTCGATTGGCATAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGATC
711 CCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
1758117 AGACCGAGAGTTACGGCAACAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTG
775 AGACAGAGGGTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTG
* *
1758182 CACATTCTGCCCCTCTGGCCGGCTAAGCATCCACACGCTCGTTTCGTGGGTTGACTTAG
840 CGCATTCTGCCCCTCTGGCCGGCTAAGC--CCACACGCTCGTTTCGTGGCTTGACTTAG
* * *
1758241 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
* *
1758306 CGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGT
66 CGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGG-
* * * * *
1758371 CACCATTGTCGAAGCATCATCGGAGAACCTGACCAACGGCATTGGGGTTCCGACAATCGGAGGGA
130 CACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGAGGG-
* * * *
1758436 CCGGGAGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTCAGCCCGT
193 CCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATT-GGCCCCT
1758501 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
1758566 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
1758631 CTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAGAAATACAAGGATCACGTCTACCAAG
386 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
1758696 TTTGCAGCCGAAACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAT
451 TTTGCAGCC-AAACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAT
*
1758761 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
515 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
* *
1758826 ATGAATTTACAATCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACC
580 ATGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
1758891 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCTGCCCGCCC
645 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCC
* *
1758956 GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGAC
710 GCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
1759021 CAGACAGAGGGTTACGGTAGCAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCTCGGCTT
774 CAGACAGAGGGTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTT
* * *
1759086 ACGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGCTTGACTTAG
839 GCGCATTCTGCCCCTCTGGCCGGCT-A-AGCCCACACGCTCGTTTCGTGGCTTGACTTAG
*
1759146 GCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA--TC
** *
1759211 ATTCCCAGTCTAGGATCAGACTGGATCGAAGGTTACGATAGCACATGCTGGGCTCGGGCATCG-G
62 A-GACC-G--AAGG-T-----T-G--C--A-G---C---AGCACATGCTGGGCTCGGGCAT-GTG
* * * * *
1759275 CTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGACT
104 CTGGTGCCACATTTTTCTTCATC-GGGCACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACG
* * *
1759340 ACATTGGGGTTTCGACGATCGAGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
167 ACATTGGGGTTCCGACGATCG-GAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
1759404 GTACTTGGCCCCTATATTGGCCCCCTATCCCTCACCAAACCTTAAGAACTCACACCCCCTTAAAG
231 GTACTTGGCCCATATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
1759469 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTT
295 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
* * *
1759534 TTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGACA-TTTTTTGTGTATGCCAAC
360 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAAC
* * ** *
1759598 AAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
424 AAAAATACAAGGATCACGTCTACCAAGTTTGCAGCC-AAACTCCTTCTGAAAAAATTTTAAAAAA
** * *
1759663 TGTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
488 TGCCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * **
1759728 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAACGCATTGGCATGCAG
553 TCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGCAG
* *
1759793 AAATATGAAGATGTGCCTAAACCCACCGAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
618 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * * * *
1759858 TCTAGCCAGCATAGTGCCCGCCCGCCCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACA
683 TCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACG
* * * * * * **
1759923 GAGTGCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGACAACCGGATCGGTAGCACGT
747 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACAGAGGGTTACGGCAACAGGATCGATAGCACAC
* * * * **
1759987 AGAAGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAATGCCCGTAC
811 AGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGCCGGCT-AA-GCCCACAC
* **
1760052 GCTCGTTTCATGTTTTGACTTAG
874 GCTCGTTTCGTGGCTTGACTTAG
* * *
1760075 GCATACTGAGTTCATTCCCAGTCTAAGAATACGGAGTGT-ATTCCCAGTCTAAGATCGGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGATCAGA
**
1760139 CCGAAGGTTGTGGCAGCAC
65 CCGAAGGTTGCAGCAGCAC
1760158 GCAGAGGGGG
Statistics
Matches: 1693, Mismatches: 182, Indels: 84
0.86 0.09 0.04
Matches are distributed among these distances:
902 7 0.00
903 171 0.10
904 14 0.01
905 678 0.40
906 7 0.00
907 6 0.00
909 4 0.00
910 1 0.00
911 1 0.00
913 3 0.00
914 2 0.00
915 1 0.00
919 1 0.00
920 2 0.00
921 3 0.00
922 1 0.00
923 1 0.00
924 3 0.00
925 3 0.00
927 4 0.00
928 5 0.00
929 670 0.40
930 4 0.00
931 93 0.05
932 8 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
CGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGC
ACCATTGCAAAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGAGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCTATCCC
TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGC
AGCCAAACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGC
CCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAG
AGGGTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATT
CTGCCCCTCTGGCCGGCTAAGCCCACACGCTCGTTTCGTGGCTTGACTTAG
Found at i:1759182 original size:26 final size:26
Alignment explanation
Indices: 1759146--1759222 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
1759136 CTTGACTTAG
*
1759146 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTAA
1759172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1759198 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1759223 GGATCAGACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1760423 original size:26 final size:26
Alignment explanation
Indices: 1760394--1760446 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1760384 GTTGATTTAG
* *
1760394 GCATACAGAGTTTATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1760420 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1760446 G
1 G
1760447 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1761314 original size:26 final size:26
Alignment explanation
Indices: 1761285--1761337 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1761275 GTTGACCTAT
1761285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
1761311 GCATATGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1761337 G
1 G
1761338 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1762179 original size:26 final size:26
Alignment explanation
Indices: 1762128--1762180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1762118 GTTAAATTAC
* *
1762128 GCATACGGAGTTCATTCCCGGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
1762154 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1762180 G
1 G
1762181 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1763004 original size:26 final size:26
Alignment explanation
Indices: 1762975--1763027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1762965 GTTGACTTAG
1762975 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
* * *
1763001 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
1763027 G
1 G
1763028 ATCAGATGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:1763181 original size:26 final size:25
Alignment explanation
Indices: 1763145--1763196 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1763135 GTTGACTTAG
*
1763145 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AATCTAA
1763171 GCATACGGAGTTCATTCCAATCTAA
1 GCATACGGAGTTCATTCCAATCTAA
1763196 G
1 G
1763197 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:1764960 original size:26 final size:26
Alignment explanation
Indices: 1764930--1764982 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1764920 GTTGACTTAG
*
1764930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1764956 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1764982 G
1 G
1764983 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1766604 original size:26 final size:26
Alignment explanation
Indices: 1766568--1766619 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1766558 GTGGATTTAG
* *
1766568 GCATACAGAGTTCATTTCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1766594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1766620 TATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1767492 original size:26 final size:26
Alignment explanation
Indices: 1767456--1767506 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1767446 TGACTTAGGT
1767456 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
1767482 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1767507 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1767908 original size:886 final size:883
Alignment explanation
Indices: 1765819--1768619 Score: 3599
Period size: 886 Copynumber: 3.1 Consensus size: 883
1765809 GGAGCATCGT
* * *
1765819 CGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATCGAGGGGGCC-GGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
1765883 ATGTGCGATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
1765948 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTCT-CTGCCAGTAGCCATTAAAGTGTC
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TGCTGCCAGTAGCCATTAAAGTGTC
* * *
1766011 TAAAATGGGGACACTTTTTTCAAATGG--ACACAATCTTGTACACTTCGATTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATT
* *
1766074 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCC
260 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCC
** *
1766139 GAAAAAATTTAAAAAAATCTCGAACCGTAAAAATTTTTGAAAATCGTGAAAAATTA-AAAACGAG
325 GAAAAAATTT-AAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCATGAAAAA-TAGAAAACGAG
* * * *
1766203 TCGTGTTGCCATGAAGCTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAAAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1766268 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
452 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * ** * *
1766333 GCTTGCGCGTCCCGTCTCTCTGGCGGGTGTAATGCCTGCCCGCCCACCCGTCCGCTCGTTTCGTC
517 GCTTGCGCAACCCGTCTCTCTGGCCGACGT-A-G--TGCCCGCTCGCCCG-CCGCTCGTTTCGTC
* * **
1766398 GGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTATGATTGGACCAGACTGAGGGTTGCGGTAG
577 GGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACC-GACTGAGGGTTGCGGTAG
* * * * *
1766463 TAGGATCGACAGCACACAAAGGGGGACTCGACCAATCCCTA-ACTTCCGTATGCCGCCCCTCTGG
640 CAGGATCGACAGCACACAAAGGGGGAC-CGACCGATCCC-AGGCTTGCGCAT-CCGCCCCTCTGG
** * * * * * * * *
1766527 CCGGCTGAGCGCCTGCACGGTCATTTTGTGGGTGGATTTAGGCATACAGAGTTCATTTCTAGTCT
702 CCGGCTGAGCATC-GCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCT
* *
1766592 AAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACTGAGGGTTGCGGCAGCACATGTTG
766 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTG
* * *
1766657 GGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGA-CGGGGTACCATCGCCGGAGCATCGC
831 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGG--CCAT---C---GCATCAC
* *
1766718 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCCCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACAT
** * *
1766783 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG--------CCC-C--CAAACCTCGAAA
65 GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * * *
1766837 ACTCACGCTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
1766902 TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-T
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATT
* * * * *
1766966 TTTTTGTGCATGCCAACAAAATTACAAGGATCA-AGTCTGCCATGTTTGGCGCCAAAACTCCTTT
260 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACA-TCTACCATGTTTGGGGCCAAAACTCCTTC
1767030 CGAAAAAATTTACAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
324 CGAAAAAATTTA-AAAAATCTCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAG
*
1767095 TCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
1767160 AATGGCATTGGCTTGCAAAAATATGAATATGTACCTAACCCCAGCTACCACCCTATCGATCCACG
452 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
1767225 GCTTGCGCAACCCGCCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCAGCTCGTTTCGTCGGTT
517 GCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCC-GCTCGTTTCGTCGGTT
* * * * *
1767290 GGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAATCA-AGTTGCAGCAGCAGGA
581 GGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGACTGAGGGTTGCGGTAGCAGGA
* * * * *
1767354 TCGGCAGCACACAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCTCGCCCCTTTGGCCGGCT
645 TCGACAGCACACAAAGGGGGACC-GACCGATCCCAGGCTTGCGCATC-CGCCCCTCTGGCCGGCT
* *
1767419 GAGCAATCGCACACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCAT
708 GAGC-ATCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCAT
* * *
1767484 ACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCG
772 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
1767549 AGCATGTGCTGGTGCCCCATTTTTCTTCATCGAGG-CA-C-CATCAC
837 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCCATCGCATCAC
* * * *
1767593 CGGAGAATCTGACCGGCGGCATTAGTGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * *
1767658 ATGTACGGTCGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
1767723 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1767788 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGACTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
* *
1767853 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTCGGGGCCAAAACTCCTTCCG
261 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCG
* * * * * *
1767918 ATAAAATTTTAAAAAATCCCAAATCATACAAAATTTCCAAAATCATGAAAAATAGAAAACGAGTC
326 A-AAAAATTTAAAAAATCTCGAACCGTA-AAAATTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
1767983 CTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1768048 TGGCATTGGAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGC
454 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
1768113 TTGCACAGCCAGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGG
519 TTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCG-CT---CGCCCG-CCGCTCGTTTCGTCGG
* * ** *
1768178 TTGGCTTTGGCATACGGAGTTCATTCCCAATCTAAGATCAGATTGGACTGAGGGTTGTGGTAGCA
579 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CCGACTGAGGGTTGCGGTAGCA
** *
1768243 GGATCGACAGCATGCAAAGGGGGACCCGGCCGATCCCAGGCTTGCGCATCC-CACCCGTCTGGCC
642 GGATCGACAGCACACAAAGGGGGA-CCGACCGATCCCAGGCTTGCGCATCCGC-CCC-TCTGGCC
* * * *
1768307 GGCTGAGTGCCT-GCACGTTCGTTTCGTGGGTTGACTTAGGTATACAAAGTTAATTCCCAGTCTA
704 GGCTGA--GCATCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTA
* * * * *
1768371 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCACATGCTGG
767 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGG
* * **
1768436 GCTCGGGAATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATTGCTGGAGCATCAC
832 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG--CCA-T-C----GCATCAC
** * * *
1768496 CGGAGAACCTGACTAGCGACATTGGGGTT-CTAGCGATCGGGGGGGCCGGGGGTTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACAT
1768560 GATG-AGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 GATGTA-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1768620 CAAGATGTGC
Statistics
Matches: 1654, Mismatches: 191, Indels: 110
0.85 0.10 0.06
Matches are distributed among these distances:
874 49 0.03
875 47 0.03
879 1 0.00
882 3 0.00
883 3 0.00
885 132 0.08
886 456 0.28
887 22 0.01
888 64 0.04
889 1 0.00
890 77 0.05
891 91 0.06
892 455 0.28
893 37 0.02
894 2 0.00
895 2 0.00
898 1 0.00
899 43 0.03
901 51 0.03
902 3 0.00
903 114 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (883 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTAAAAAATCTCGAACCGTAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACACAAAGGGGGACCGACCGATCCCAGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCATCG
CACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCATCGGGGCCATCGCATCAC
Found at i:1768925 original size:26 final size:26
Alignment explanation
Indices: 1768889--1768944 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
1768879 TGGGTTGACT
1768889 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1768915 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1768941 TAAG
1 TAAG
1768945 ATCAGATCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:1770519 original size:26 final size:26
Alignment explanation
Indices: 1770483--1770535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1770473 GTTAACTTAG
*
1770483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1770509 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1770535 G
1 G
1770536 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1771629 original size:26 final size:26
Alignment explanation
Indices: 1771599--1771650 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1771589 TAACTTTGGG
*
1771599 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGGTCATTCCCAGTCTAAGA
1771625 ATACGGAGGTCATTCCCAGTCTAAGA
1 ATACGGAGGTCATTCCCAGTCTAAGA
1771651 TCGGACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
ATACGGAGGTCATTCCCAGTCTAAGA
Found at i:1775173 original size:25 final size:23
Alignment explanation
Indices: 1775144--1775191 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
1775134 TAGGCATACA
1775144 GAGTTCATTCCCAATCTAAGCATAG
1 GAGTTCATT-CCAATCTAAG-ATAG
*
1775169 GAGTTCATTCCGATCTAAGATAG
1 GAGTTCATTCCAATCTAAGATAG
1775192 ACCAGACCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 9 0.41
25 9 0.41
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (23 bp):
GAGTTCATTCCAATCTAAGATAG
Found at i:1776066 original size:26 final size:26
Alignment explanation
Indices: 1776030--1776079 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1776020 GACTTAGGCA
1776030 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
1776056 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1776080 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:1776918 original size:26 final size:26
Alignment explanation
Indices: 1776882--1776934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1776872 GTTGACTTAG
*
1776882 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1776908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1776934 G
1 G
1776935 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1778524 original size:26 final size:26
Alignment explanation
Indices: 1778487--1778539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1778477 GTTGACTTAG
*
1778487 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1778513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1778539 G
1 G
1778540 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1780019 original size:905 final size:900
Alignment explanation
Indices: 1777617--1780089 Score: 3492
Period size: 891 Copynumber: 2.7 Consensus size: 900
1777607 TAGGCATATG
* **
1777617 GAGTTCATTCCAAGTCTAAGATCAGATTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * ** * *
1777682 ATGTGCTAGTGTCACATTTTTCTTCGTTAGGGCACCATCGCTGGAGCATTGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGAG-A-TGCCGGAGAACCTAAC
* * * * *
1777747 TGGCAGCATTGGGGTTCCAGA-GATCGGGGGGGTCGGGGGGGTGTCCGCGCATGATGTGCGATGG
128 CGACGGCATTGGGGTTCCA-ACGATC-GGGGGGACGGGGGGGTGTGCGCGCATGATGTGCGATGG
* * * * *
1777811 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAACCCTCAAGAACTCACACCTCC
191 GTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCACC
*
1777876 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAATAGGGA
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AGAAATGGGGA
** * *
1777940 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTATAGTTTTTAGTTGAATTTTTTTGTCCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
1778005 ACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
385 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
1778070 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCAT
450 GAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
*
1778135 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1778200 AGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT-T
580 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
1778264 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCACTCGTTTCGTCGGTTGGCTTAGG
645 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCACTCGTTTCGTCGGTTGGCTTAGG
* *
1778329 CAGATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAAGATCGACAG
710 CAGATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGATTGTGGCAGCAAGATCGACAG
* * * *
1778394 CACGCAGAGAGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCC
775 CACGCAGAGAGGGACCCAACCAATCCTCGGCTTGCACATCCCACCCCTCTAGCCGACTGAGTGCC
* * * * * *
1778459 CGCGCGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACG
840 CACACACTCATTCCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
* * * *
1778520 GAGTTCATTCCCAGTCTAAGATCAAACCAGTCCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * *
1778585 ATGTGCTGGTGCTGCATTTTTCTTTGCCGAGGCACCA---TC---A--CCGGCGAACCTAACCGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGATGCCGGAGAACCTAACCGA
* * * * * *
1778642 CGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCC
131 CGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCT
* * *
1778707 GGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCACCTTAAA
* *
1778772 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTT
261 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTT
* *
1778837 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAA
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1778902 AAAAATACAAGGATCACGACTACCATGTTTGGGGCTAAAACTCCTTCC-AAAAAAATTTGAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTG-AAAA
* * * * *
1778966 ATATCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
455 ATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * **
1779031 TTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCATTGGCACATA
520 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
1779096 GAAATATAAAGATGTGCCTAAACCCACCTACC-CCTCTATCGATCCACGGCTTGCGCATCCCCTC
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
1779160 TCTCTGGCCGACGTAGTGCCCGCCCGCGC-TTTCGCTCGCTCGTTTCTTTGGTTGGCTTAGGCAT
649 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCT-GCCCACTCGTTTCGTCGGTTGGCTTAGGCAG
* ** * *
1779224 ATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATTGAGGATT-TCGGCAGCAAGATCGGCAGT
713 ATGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGATTGT-GGCAGCAAGATCGACAGC
* ** * *
1779287 ACGCAGAGGGGGACCCAACCAATCC-CTGGCTTGCACATCCTTCCCCTCTAGTCGGCTGA-TCGC
776 ACGCAGAGAGGGACCCAACCAATCCTC-GGCTTGCACATCCCACCCCTCTAGCCGACTGAGT-GC
* * * *
1779350 CCACACACTCGTTTCGTGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACA
839 CCACACACTCATTCCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
* * *
1779412 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1779477 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGTATCGCCGGAGAACCTAAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAG-AT-GCCGGAGAACCTAAC
* *
1779542 CGACGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGGGGTGTGCGCGCATGATGTGTGTTGGG
128 CGACGGCATTGGGGTTCCAACGATCGGGGGGAC-GGGGGGGTGTGCGCGCATGATGTGCGATGGG
** *
1779607 TGCTAATACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAACCTCGAGAACTCACACCACC
192 TGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC-AAACCTCAAGAACTCACACCACC
* *
1779672 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCACTAAAGTGTCAGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGAC
*
1779737 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCAT
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * *
1779802 GCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAGTTTT
385 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
1779867 GAAAAAT-CCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
450 GAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
1779931 GAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACATGCCATAGAAATGGCATTGGC
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
1779996 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
580 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
1780061 CGTCTCTATGGCTTG-CGTAGTGCCCGCCC
645 CGTCTCTCTGGC-CGACGTAGTGCCCGCCC
1780090 TATCGATCCC
Statistics
Matches: 1384, Mismatches: 159, Indels: 52
0.87 0.10 0.03
Matches are distributed among these distances:
890 11 0.01
891 440 0.32
892 332 0.24
895 3 0.00
899 1 0.00
900 1 0.00
903 129 0.09
904 64 0.05
905 326 0.24
906 68 0.05
907 9 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGATGCCGGAGAACCTAACCGA
CGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCACCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAA
TACCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGATG
GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGATTGTGGCAGCAAGATCGACAGCACGCA
GAGAGGGACCCAACCAATCCTCGGCTTGCACATCCCACCCCTCTAGCCGACTGAGTGCCCACACA
CTCATTCCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
Found at i:1780202 original size:26 final size:26
Alignment explanation
Indices: 1780166--1780240 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
1780156 GTTGACTTAG
1780166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1780192 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1780218 GCATACAGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
1780241 AAAGATCAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1781132 original size:26 final size:26
Alignment explanation
Indices: 1781095--1781147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1781085 GTTGACTTAG
*
1781095 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1781121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1781147 G
1 G
1781148 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1781947 original size:903 final size:892
Alignment explanation
Indices: 1780192--1783009 Score: 3734
Period size: 903 Copynumber: 3.1 Consensus size: 892
1780182 CCCAGTCTAA
* * * * *
1780192 GCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
*
1780257 CGAAGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG
66 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG-GG
* * *
1780322 CACCATTGCCAAAGCATCGTCGGAGAACCTGACCGACGACTTTGGGGTTCCGATGATCAGAGGGG
130 CACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CGACGATC-GAGGGG
* * * *
1780387 TCGGGGGGGTGTGCGCACAT-ATGTGTGATGGGTGCTGGTACATGGCCCATATATTGGGCCCCTA
192 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTATATATT-GGCCCCTA
* *
1780451 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
255 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTG
*
1780516 CCAGTAGCCATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
319 CCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
1780581 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
384 TTCGAGTTTTTAGCTGAA--TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
1780646 TTGCAGCCAATACTCCTTCTGAAAAAATTTTAAAAAATACCAAATCGCAAAAAGTTTC-AAAAAT
447 TTGCAGCCAA-ACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAAT
*
1780710 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGTGACCATTGT
511 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
* * *
1780775 ATGAATTTACAATCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATCTACCTAAACCCACC
576 ATGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
1780840 TACCACCCGATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCG
641 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCTGCCCGCCC
* * *
1780905 GCCCGCCCGCTCGTTTCGTCGATTGGCATAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGAT
706 GCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
1780970 CAGACCGAGAGTTACGGCAACAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTT
770 CAGACAGAGGGTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTT
* * *
1781035 GCACATTCTGGCCCTCTGGCCGGCTAAGCATCCACACGCTCGTTTCGTGGGTTGACTTAG
835 GCGCATTCTGCCCCTCTGGCCGGCTAAGC--CCACACGCTCGTTTCGTGGCTTGACTTAG
* * *
1781095 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * **
1781160 TGAAGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCGGCGGGT
66 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG-
** * * * *
1781225 CACCATTGTTGAAGCATCATAGGAGAACCTGACCAACGGCATTGGGGTTCGACAATCGGAGGGGC
130 CACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCGACGATC-GAGGGGC
* *
1781290 CGGGAGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTCGGCCCGTAT
193 CGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTATATATT-GGCCCCTAT
*
1781355 -CCTCATCAAACCTTGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTAACAGGTTGCTGC
256 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-ACAGGTTGCTGC
* * *
1781419 CAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACAC
320 CAGTAGCCATTAAAGTGTCTAAAATAGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACAC
*
1781484 TTCGAGTTTTTAGCTGAATTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
384 TTCGAGTTTTTAGCTGAATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
*
1781549 GCAGCCGAAACTCCTTTTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCA
449 GCAGCC-AAACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCA
1781614 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGC-TAAGGGACCATTGTAT
513 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTAT
* * *
1781678 GAATTTACAATCCATAAAAATGGCATTGGCATGTTAGAAATAGGAAGATTGTGCCTAAACCAACC
578 GAATTTACAATCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGA-TGTGCCTAAACCCACC
* * *
1781743 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCAGCGTAGTGCTTGCCCGCCT
641 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCTGCCCGCCC
* *
1781808 GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGAC
706 GCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * **
1781873 CAGACAGAGGGTTACGGTAGCAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCTTCGGCTT
770 CAGACAGAGGGTTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTT
* * *
1781938 ACGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCATTT-GTGGCTTGACTTAG
835 GCGCATTCTGCCCCTCTGGCCGGCT-A-AGCCCACACGCTCGTTTCGTGGCTTGACTTAG
*
1781997 GCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG--T---C-TA---AG---
* *
1782062 ATTCCCAGTCTAGGATCGGACTGGATCGAAGGTTACGGTAGCACATGCTGGGCTCGGGCATCG-G
54 ------A-TC--GGATCGGAC-----CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTG
* * * * *
1782126 CTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACTGACG
104 CTGGTGCCACATTTTTCTTCA-CCGGGCACCATTG-CAAAGCATCGTCGGAGAACCTGACCGACG
*
1782191 GCATTGGGGTTTCGACGATCGAGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGG
167 GCATTGGGG-TTCGACGATCGA-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
1782255 TACTTGGCCCT-TATATTGGCCCCCTATCCCTCACCAAACCTTAAGAACTCACACCCCCTTAAAG
230 TACTTGG-CCTATATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
*
1782319 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTT
293 AGCATTTGAGATTTTAC-AGGTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTT
* * * * *
1782384 TTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGACTTTTTTTATGTATGCCAACA
357 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTGTGCATGCCAACA
* ** ** *
1782449 AAAATACAAGGATCATGTCTAGTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
420 AAAATACAAGGATCACGTCTACCAAGTTTGCAGCC-AAACTCCTTCTGAAAAAATTTTAAAAAAT
** *
1782514 GTTGAA-CGCAAAAAGTTTCAAAAAATCATGAAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
484 GCCGAATCGCAAAAAGTTTCAAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
1782578 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAT-GCATTGGCAATG
548 TTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCAT-AAAAATGGCATTGGC-ATG
*
1782642 CAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGT
611 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * *
1782707 CTCTCTAGCCAGCATAGTGCCCGCCCGCCCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCAT
676 CTCTCTGGTCAGCGTAGTGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCAT
* * * * * *
1782772 ACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGACAACCGGATCGGTAGCA
740 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACAGAGGGTTACGGCAACAGGATCGATAGCA
** * * * * *
1782836 CGTAGAAGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCG
804 CACAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGCCGGCT-AA-GCCCA
* * **
1782901 TACGCTCGTTTCATGTTTTGACTTAG
867 CACGCTCGTTTCGTGGCTTGACTTAG
*
1782927 GCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTGT-ATTCCCAGTCTAAGATCGGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGATCGGATCGGA
*
1782991 CCGAAGGTTGTGGCAGCAC
65 CCGAAGGTTGCGGCAGCAC
1783010 GCAGAGGGGG
Statistics
Matches: 1684, Mismatches: 175, Indels: 111
0.85 0.09 0.06
Matches are distributed among these distances:
901 148 0.09
902 239 0.14
903 467 0.28
904 18 0.01
905 2 0.00
907 1 0.00
908 2 0.00
909 9 0.01
911 4 0.00
912 1 0.00
920 1 0.00
921 4 0.00
923 8 0.00
924 2 0.00
925 1 0.00
926 2 0.00
927 98 0.06
928 208 0.12
929 355 0.21
930 104 0.06
931 10 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGC
ACCATTGCAAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCGACGATCGAGGGGCCGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTGGCCCCTATCCCTC
ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCCA
AACTCCTTCTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCTGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGG
TTACGGCAACAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATTCTGC
CCCTCTGGCCGGCTAAGCCCACACGCTCGTTTCGTGGCTTGACTTAG
Found at i:1782033 original size:26 final size:26
Alignment explanation
Indices: 1781997--1782073 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
1781987 CTTGACTTAG
*
1781997 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTAA
1782023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1782049 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1782074 GGATCGGACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1782526 original size:928 final size:930
Alignment explanation
Indices: 1781095--1782979 Score: 2663
Period size: 929 Copynumber: 2.0 Consensus size: 930
1781085 GTTGACTTAG
* *
1781095 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
* * * * *
1781160 TGAAGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCGGCGGGT
66 CGAAGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCAGCGGGG
* **
1781225 CACCATTGTTGAAGCATCATAGGAGAACCTGACCAACGGCATTGGGGTTCGACAATCGGAGGGGC
131 CACCATCGCAGAAGCATCATAGGAGAACCTGACCAACGGCATTGGGGTTCGACAATCGGAGGGGC
* *
1781290 CGGGAGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTCGGCCCGTAT
196 CGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTCGGCCCCTAT
* *
1781355 CCTCATCAAACCTTGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTAACAGGTTGCTGCC
261 CCTCACCAAACCTTAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTAACAGGTTGCTGCC
* *
1781420 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACT
326 AATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
1781485 TCGAGTTTTTAGCTGAATTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
391 TCAAGTTTTTAGCTGAATTTTTATGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* **
1781550 CAGCCGAAACTCCTTTTGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCAT
456 CAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCAT
* *
1781615 G-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGC-TAAGGGACCATTGTAT
521 GAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* *
1781678 GAATTTACAATCCAT-AAAAATGGCATTGGC-ATGTTAGAAATAGGAAGATTGTGCCTAAACCAA
586 GAATTTACAAGCCATAAAAAAT-GCATTGGCAATG-CAGAAATAGGAAGA-TGTGCCTAAACCAA
* * * * * **
1781741 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCAGCGTAGTGCTTGCCCGC
648 CCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCATAGTGCCCGCCCGC
* * * *
1781806 CTGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAG
713 CCGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
** * * **
1781871 ACC-AGACAGAGGGTTACGGTAGCAGGATCGATAGCACACAGAGGGGGACCTGGTCGATCTTCGG
778 ACCGA-ACAGAGGGTTACGACAACAGGATCGATAGCACACAGAAGGGGACCTGGTCGATCCCCGG
* * * *
1781935 CTTACGCATTCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCATTT-GTGGCTTGACTTAGGC
842 CTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCATTTCATGGCTTGACTTAGGC
*
1781999 ATACGGAGTTCATTCCCAGTCTCA
907 ATACGGAGTTCATTCCCAGTCTAA
*
1782023 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGA-CTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGA
* * * *
1782087 TCGAAGGTTACGGTAGCACATGCTGGGCTCGGGCATCG-GCTGGTGCCATATTTTTCTTCATCGG
65 TCGAAGGTTACGGCAGCACATGCTGGGCTCGAGCAT-GTGCTGGTGCCACATTTTTCTTCAGCGG
* * ** *
1782151 GGCACCATCGCCAG-AGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTTCGACGATC-GAG
129 GGCACCATCG-CAGAAGCATCATAGGAGAACCTGACCAACGGCATTGGGG-TTCGACAATCGGA-
*
1782214 GGGGCC-GG-GGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCT-TATATT-GGC
191 GGGGCCGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTATATATTCGG-
*
1782275 CCCCTATCCCTCACCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-ACAAG
254 CCCCTAT-CCTCACCAAACCTTAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTAAC-AG
* * *
1782339 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACAC-TTTTTTCAAATGGTTACAAAATC
317 GTTGCTGCCAATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTTCAAATGGTCACAAAATC
* * * *
1782403 TTGTACACTTCAAGTTTTTAGCTGACTTTTTTTATGTATGCCAACAAAAATACAAGGATCATGTC
382 TTGTACACTTCAAGTTTTTAGCTGA--ATTTTTATGCAAGCCAACAAAAATACAAGGATCACGTC
** ** **
1782468 TAGTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATGTTGAA-CGCAAAAAGTTT
445 TACCAAGTTTGCAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTT
*
1782532 CAAAAAATCATGAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
510 CAAAAAATCATGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
1782597 GACCATTGTATGAATTTACAAGCCATAAAAAATGCATTGGCAATGCAGAAATATGAAGATGTGCC
575 GACCATTGTATGAATTTACAAGCCATAAAAAATGCATTGGCAATGCAGAAATAGGAAGATGTGCC
*
1782662 TAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCATAGTGC
640 TAAACCAACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCATAGTGC
* * * *
1782727 CCGCCCGCCCGCCTGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
705 CCGCCCGCCCGCCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * **
1782792 AAGATCAGACCGAACTGAGGGTTGCGACAACCGGATCGGTAGCACGTAGAAGGGGACCTGGTCGA
770 AAGATCAGACCGAACAGAGGGTTACGACAACAGGATCGATAGCACACAGAAGGGGACCTGGTCGA
* * ** * **
1782857 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGTACGCTCGTTTCATGTTTTGA
835 TCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCATTTCATGGCTTGA
*
1782922 CTTAGGCATACTGAGTTCATTCCCAGTCTAA
900 CTTAGGCATACGGAGTTCATTCCCAGTCTAA
1782953 GCATACGGAGTGT-ATTCCCAGTCTAAG
1 GCATACGGAGT-TCATTCCCAGTCTAAG
1782980 ATCGGATCGG
Statistics
Matches: 846, Mismatches: 93, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
926 2 0.00
927 99 0.12
928 270 0.32
929 354 0.42
930 111 0.13
931 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (930 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
CGAAGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCAGCGGGG
CACCATCGCAGAAGCATCATAGGAGAACCTGACCAACGGCATTGGGGTTCGACAATCGGAGGGGC
CGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTATATATTCGGCCCCTAT
CCTCACCAAACCTTAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTAACAGGTTGCTGCC
AATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCAAGTTTTTAGCTGAATTTTTATGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
CAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATGCCGAATCGCAAAAAGTTTCAAAAAATCAT
GAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAAATGCATTGGCAATGCAGAAATAGGAAGATGTGCCTAAACCAACCG
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCATAGTGCCCGCCCGCCCG
CCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
GAACAGAGGGTTACGACAACAGGATCGATAGCACACAGAAGGGGACCTGGTCGATCCCCGGCTTA
CGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCATTTCATGGCTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAA
Found at i:1782957 original size:26 final size:26
Alignment explanation
Indices: 1782927--1782979 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1782917 TTTGACTTAG
*
1782927 GCATACTGAGT-TCATTCCCAGTCTAA
1 GCATACGGAGTGT-ATTCCCAGTCTAA
1782953 GCATACGGAGTGTATTCCCAGTCTAA
1 GCATACGGAGTGTATTCCCAGTCTAA
1782979 G
1 G
1782980 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGTATTCCCAGTCTAA
Found at i:1784163 original size:26 final size:26
Alignment explanation
Indices: 1784127--1784179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1784117 GTTGACCTAT
1784127 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1784153 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1784179 G
1 G
1784180 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1784984 original size:26 final size:26
Alignment explanation
Indices: 1784948--1785000 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1784938 GTTAACTTAC
1784948 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
1784974 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1785000 G
1 G
1785001 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1785832 original size:26 final size:26
Alignment explanation
Indices: 1785803--1785855 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1785793 GTTAACTTAG
1785803 GCATACGAAGCTCATTCCCAATCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
* * * *
1785829 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
1785855 G
1 G
1785856 ATCAGATGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAATCTAA
Found at i:1786009 original size:26 final size:25
Alignment explanation
Indices: 1785973--1786024 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1785963 GTTGACTTAG
1785973 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
*
1785999 GCATACGGAGTTCATTCCATTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
1786024 G
1 G
1786025 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:1789429 original size:26 final size:26
Alignment explanation
Indices: 1789393--1789444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1789383 GTGGATTTAG
1789393 GCATACAGAGTTCATTTCC-AATCTAA
1 GCATACAGAGTTCA-TTCCTAATCTAA
*
1789419 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
1789445 TATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:1791167 original size:26 final size:26
Alignment explanation
Indices: 1791127--1791177 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1791117 TGACTTAGGT
1791127 ATATGAAGTTAATTCCCAGTCTAAGC
1 ATATGAAGTTAATTCCCAGTCTAAGC
* *
1791153 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGAAGTTAATTCCCAGTCTAAG
1791178 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (26 bp):
ATATGAAGTTAATTCCCAGTCTAAGC
Found at i:1791603 original size:26 final size:26
Alignment explanation
Indices: 1791567--1791619 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1791557 GTTGACTTAG
1791567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1791593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1791619 G
1 G
1791620 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1792791 original size:711 final size:698
Alignment explanation
Indices: 1791427--1792823 Score: 1980
Period size: 711 Copynumber: 2.0 Consensus size: 698
1791417 GTTTATTCCC
* * * * *
1791427 AGTCTAAGATTGGATCAGACCAAGGGTTGACGTAGCAGGATCGGCACCACACTGAGGGGGACCCG
1 AGTCTAAGATTAGACCAGACCAAGGGTTGACGCAGCAGGATCGGCACCACACAGAGGGGGACCCA
* * * *
1791492 GTCGATTCCAGGCTTGCACATTCTAGCCCTCTGGCTGGCTGAGCGCCCGCACACTCATTTCGTGG
66 GTCGATCCCAGGCTCGCACATTCCAGCCCTCTGGCTAGCTGAGCGCCCGCACACTCATTTCGTGG
**
1791557 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
131 GTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
1791622 CGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTC
196 CAGACCAGACTGAGGGTTGCGGCAGAACATGCTGGGCTCGAGCATGTGCTGGCGTCACATTTTTC
* * * * *
1791687 TTCGTCGAGGCACCATCGTCGGAGAACTTGACCTGCGGCATTGGGGTTCCGGCATCGAGGGGTCG
261 TTCGTCGAGGCACCATCGTCGGAGAACCTGACCTGCGGCATTAGGGTTACGGCACCGAGGGGGCG
* * *
1791752 GGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCT
326 GGGGGTGTGCACAAATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
1791817 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
391 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
*
1791882 TAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATCTTGTACACTTTG
456 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTG
* * * * *
1791947 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAATGCAAGGATCACGTCTACTAAGTTTGG
521 AGTTTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* **
1792012 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGA
586 GGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* *
1792077 AAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCATAGTTCATTCAT
651 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATAGTTCATTCAT
* ** * * **
1792125 AGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCCA
1 AGTCTAAGATTAGACCAGACCAAGGGTTGACGCAGCAGGATCGGCACCACACAGAGGGGGACCCA
* * * * * *
1792190 GTCGATCCCCGGCTCGCGCA-TCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACGCTCGTTTTGTG
66 GTCGATCCCAGGCTCGCACATTCCAG-CCCTCTGGCTAGCTGAGCGCCCGCACACTCATTTCGTG
*
1792254 GGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGA
130 GGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
1792319 TCAGACCAGA-TCGAGGGTTGCGGTAGAACATGCTGGGCTC-AGGCATGTGCTGGCG-CTACATT
195 TCAGACCAGACT-GAGGGTTGCGGCAGAACATGCTGGGCTCGA-GCATGTGCTGGCGTC-ACATT
* *
1792381 TTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACC-GACGGCGTTAGGGTTA
257 TTTCTTCGTCGAGGCA-C--CATC---G--T---CGGAGAACCTGACCTG-CGGCATTAGGGTTA
* *
1792445 CGGCGACCG-GCGGGGCGAGGGGTTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCT
310 CGGC-ACCGAG-GGGGCG-GGGGGTGTGCACAAATGATGTGCGATGGATGCTGGTACTTGGCCCT
*
1792509 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCATTTGAGAT
372 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
1792574 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
437 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCA
* *
1792639 CAAAATCTTGTACACTTTGATTTTTTAGATGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGA
502 CAAAATCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
1792704 TCATGTCTACCAAGTTTGGGGATAAAATTCCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTA
567 TCACGTCTACCAAGTTTGGGGACAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
*
1792768 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
631 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
1792824 CGTGAAGGCT
Statistics
Matches: 614, Mismatches: 65, Indels: 27
0.87 0.09 0.04
Matches are distributed among these distances:
697 6 0.01
698 230 0.37
699 1 0.00
701 4 0.01
704 1 0.00
706 1 0.00
708 1 0.00
709 29 0.05
710 8 0.01
711 329 0.54
712 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (698 bp):
AGTCTAAGATTAGACCAGACCAAGGGTTGACGCAGCAGGATCGGCACCACACAGAGGGGGACCCA
GTCGATCCCAGGCTCGCACATTCCAGCCCTCTGGCTAGCTGAGCGCCCGCACACTCATTTCGTGG
GTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACTGAGGGTTGCGGCAGAACATGCTGGGCTCGAGCATGTGCTGGCGTCACATTTTTC
TTCGTCGAGGCACCATCGTCGGAGAACCTGACCTGCGGCATTAGGGTTACGGCACCGAGGGGGCG
GGGGGTGTGCACAAATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTG
AGTTTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATAGTTCATTCAT
Found at i:1793201 original size:26 final size:26
Alignment explanation
Indices: 1793165--1793217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1793155 GTTAACTTAG
*
1793165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
1793191 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
1793217 G
1 G
1793218 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:1794312 original size:26 final size:26
Alignment explanation
Indices: 1794282--1794333 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1794272 TAACTTTGGG
*
1794282 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGGTCATTCCCAGTCTAAGA
1794308 ATACGGAGGTCATTCCCAGTCTAAGA
1 ATACGGAGGTCATTCCCAGTCTAAGA
1794334 TCGGACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
ATACGGAGGTCATTCCCAGTCTAAGA
Found at i:1794398 original size:226 final size:226
Alignment explanation
Indices: 1793995--1794403 Score: 658
Period size: 226 Copynumber: 1.8 Consensus size: 226
1793985 CCTTGAGTTA
* * *
1793995 CGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGGATAT
1 CGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTAACTTAGGGATAC
* * *
1794060 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAGCAAGGG
66 GGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
* * * *
1794125 TTGCGGCAGCACATGCTGGGCTCGAGCGTGTGCTGGTGTCGCATTTTTCTTCGTCGGAGCATCGT
131 TTGCGGCAGCACATGCTGGGCTCGAGCATGTACTGCTGTCACATTTTTCTTCGTCGGAGCATCGT
1794190 CAGAGAACCTAACTGGCCGATCCCCGGCTTG
196 CAGAGAACCTAACTGGCCGATCCCCGGCTTG
* * * * *
1794221 CGCGTCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCGTTTCATGGGTTAACTTTGGGATAC
1 CGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTAACTTAGGGATAC
1794286 GGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
66 GGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
*
1794351 TTGCGGTAGCACATGCTGGGCTC-AGGCATGTACTGCTGTCACATTTTTCTTCG
131 TTGCGGCAGCACATGCTGGGCTCGA-GCATGTACTGCTGTCACATTTTTCTTCG
1794404 CCGGGCCACC
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
225 1 0.01
226 165 0.99
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.24
Consensus pattern (226 bp):
CGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTAACTTAGGGATAC
GGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG
TTGCGGCAGCACATGCTGGGCTCGAGCATGTACTGCTGTCACATTTTTCTTCGTCGGAGCATCGT
CAGAGAACCTAACTGGCCGATCCCCGGCTTG
Found at i:1795964 original size:893 final size:894
Alignment explanation
Indices: 1794207--1795954 Score: 2521
Period size: 893 Copynumber: 2.0 Consensus size: 894
1794197 CCTAACTGGC
** * * * * * *
1794207 CGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACACTCGTTTCATGGGT
1 CGATCCCCAACTTGCGCATCACACCCCTCTAGCAGGCTGAGCGCCCGGACACTCGTTTCATGGGT
* * *
1794272 TAACTTTGGGATACGGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCG
66 TAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCG
** *
1794337 GACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTACTGCTGTCACATTTTTCTT
131 GACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTACTGCTGTCACATTTATCTT
* ** * *
1794402 CGCCGGGCCACCATCACCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT
196 CGCCGGGCCACCATCACCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTACGATTCCGACGAT
** *
1794467 CGGGGCGGTCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATAATG
261 CGGGGCGGTCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAATG
* *
1794532 GCCTCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
326 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
1794597 GTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
391 GCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
* **
1794662 TTGTAAACTTTGAGTTTTAGCAGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCT
456 TTGTAAACTTTGAGTTTTAGCAGAATTTTTTGATGCATGCCAACAAAAATACAAGGATCACATCT
*
1794727 ACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAATTTTAAAAAATGCCGAACCGTAAAAAGTTTC
521 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATGCCGAACCGTAAAAAGTTTC
* *
1794792 AAAAATCGGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACC
586 AAAAATCGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACC
*
1794857 AATGTATGAATTTACAAACCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
651 AATGTATGAATTTACAAACAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * *
1794922 CCACCTACCACCCTATCGATCCACGGCTTGCATATCCCTCCTCTCCGATCGGTATAGTGCCCACC
716 CCACCTACCACCCTATCGATCAACGGCTTGCACATCCCTCCTCTCCGACCGGCATAGTGCCCACC
* * * *
1794987 CGCCCGCTCATTTCGTCAGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCGCATCGG
781 CGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGGTCAGTCCCAGTCTAAGATCGAATCGG
*
1795052 ACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGTGACCCGAT
846 ACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGTGACCCGAT
* ** *
1795101 CGATCCCCAACTTGCGCATCACACCCCTCTAGCAGGCTGAGCGCTCGGACTTTCGTTTCGTGGGT
1 CGATCCCCAACTTGCGCATCACACCCCTCTAGCAGGCTGAGCGCCCGGACACTCGTTTCATGGGT
* * * *
1795166 TCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
66 TAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCG
* * *
1795231 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCATTTATCT
131 GACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTACTGCTGTCA-CATTTATCT
* * ** * * *
1795295 TCGTCGGGGCACCATCGTCAGAGCATCGTC-GAAGAACCTTACCGGCGGCATTACGATTCCGATG
195 TCGCCGGGCCACCATCACCAGAGCATCGCCAG-AGAACCTGACCGGCGGCATTACGATTCCGACG
*
1795359 ATCGGAGG-GG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
259 ATCGG-GGCGGTCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
* *
1795422 TTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
323 ATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
1795486 CAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
388 CAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAA
* *
1795551 ATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGA-GCATGCCAACAAAAATACAAGGATCA
453 ATCTTGTAAACTTTGAG-TTTTAGCAGAAT-TTTTTGATGCATGCCAACAAAAATACAAGGATCA
*
1795615 CATCTACCTAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAT-CTCGAACCG-AAA
516 CATCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATGC-CGAACCGTAAA
* * *
1795677 AAGTTTCAAAAATTGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
579 AAGTTTCAAAAATCG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTT
* * * * * *
1795742 AAGGGACCATTGTATGATTTTACAAGCAATAAAAATGGTATTGGCACGTAGAAATATGAATATGT
643 AAGGGACCAATGTATGAATTTACAAACAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* ** * *
1795807 GCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCAT-CTCTTTGGCCGGCGTA
708 GCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCACATCCC-TCCTCTCCGACCGGCATA
* * * *
1795871 GTGCCCGCCCGCCCGCCTGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGGTCAGT-CCAGTCT
772 GTGCCCACCCG--C-CC-GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGGTCAGTCCCAGTCT
1795935 AAGATCGGAAT-GGACCGAGG
833 AAGATC-GAATCGGACCGAGG
1795955 TTTGCAGCAG
Statistics
Matches: 755, Mismatches: 85, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
892 125 0.17
893 338 0.45
894 230 0.30
895 3 0.00
896 23 0.03
897 36 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CGATCCCCAACTTGCGCATCACACCCCTCTAGCAGGCTGAGCGCCCGGACACTCGTTTCATGGGT
TAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATCG
GACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTACTGCTGTCACATTTATCTT
CGCCGGGCCACCATCACCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTACGATTCCGACGAT
CGGGGCGGTCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAATG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
TTGTAAACTTTGAGTTTTAGCAGAATTTTTTGATGCATGCCAACAAAAATACAAGGATCACATCT
ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATGCCGAACCGTAAAAAGTTTC
AAAAATCGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACC
AATGTATGAATTTACAAACAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCAACGGCTTGCACATCCCTCCTCTCCGACCGGCATAGTGCCCACC
CGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGGTCAGTCCCAGTCTAAGATCGAATCGG
ACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGTGACCCGAT
Found at i:1796579 original size:712 final size:711
Alignment explanation
Indices: 1795200--1796678 Score: 2222
Period size: 712 Copynumber: 2.1 Consensus size: 711
1795190 CCCAGTCTAA
* * * *
1795200 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGGTCAGTCCCAGTCTAAGATCGGAACGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
1795265 CTCAGGCATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGAAGA
66 CTCACGCATGTGCTGGTACAGAATTTACCTTCGTCGGCGCACCATCGCCAGAGCATCGCCGAAGA
* * * * *
1795330 ACCTTACCGGCGGCATTACGATTCCGATGATCGGAGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTACGATTCCGACGATCGGAGGGGCCAGGGGGTGTACGCACATGATATGC
*
1795395 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1795460 CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1795525 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGAG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGAG
* * * *
1795590 CATGCCAACAAAAATACAAGGATCACATCTACCTAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CACGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAAT
** *
1795655 TTTAAAAAATCTCGAACCGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAGCGAGTCGTCTTGCC
456 TTTAAAAAATCTCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1795720 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCAATAAAAATGGTATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTG
* *
1795785 GCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
586 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCAT
* *
1795850 CCCATCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCTTCGGTTGGCTTAG
651 CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATC-GTTGGCTTAG
* *
1795912 GCATACGGAGGTCAGT-CCAGTCTAAGATCGGAATGGACCGAGGTTTGC-AGCAGCACATGCTGG
1 GCATACGGAGGTCAGTCCCAGTCTAAGATCGGAACGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * *
1795975 GCTCACGCATGTGCTGGTACTGTAATTT-CCTTCGTC-GCGCACCATTGCCCGAGCA-CAGCC-A
65 GCTCACGCATGTGCTGGTACAG-AATTTACCTTCGTCGGCGCACCATCGCCAGAGCATC-GCCGA
** * * *
1796036 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTACGCACATGA
128 -AGAACCTGACCGACGGCATTACGATTCCGACGATCGGAGGGGCC-AGGGGGTGTACGCACATGA
1796101 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
1796166 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1796231 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
** **
1796296 TTTTTGCACGCCAACAAAAATACAAAGATCATGTCTACCAAGTTTGGGG-CAAAACCCCTTC-GA
385 TTTGAGCACGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCTG-
1796359 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCTCGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * * *
1796424 GTCTTGCCATGTAACTTCATGTTAAGGCTTCAA-GGACCATTGTATGAATTTAGAAGCCATAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCAATAAAA
* * *
1796488 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATGGATCCACAG
577 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAG
* *
1796553 CTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGTTGG
642 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGTTGG
1796618 CTTAG
707 CTTAG
* * * * * *
1796623 GCATACGGAGTTCATTCCCAGTCTAAGATC-AAACCGGACTGAAGGTTGCGGCAGCA
1 GCATACGGAGGTCAGTCCCAGTCTAAGATCGGAA-CGGACCGAGGGTTGCGACAGCA
1796679 GGATCGGTAG
Statistics
Matches: 690, Mismatches: 65, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
709 2 0.00
710 56 0.08
711 216 0.31
712 414 0.60
713 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGGTCAGTCCCAGTCTAAGATCGGAACGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCACGCATGTGCTGGTACAGAATTTACCTTCGTCGGCGCACCATCGCCAGAGCATCGCCGAAGA
ACCTGACCGACGGCATTACGATTCCGACGATCGGAGGGGCCAGGGGGTGTACGCACATGATATGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGAG
CACGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAAT
TTTAAAAAATCTCGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCAT
CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGTTGGCTTAG
Found at i:1796819 original size:26 final size:26
Alignment explanation
Indices: 1796784--1796834 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1796774 TGACTAAGGG
1796784 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1796810 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1796835 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1797102 original size:226 final size:226
Alignment explanation
Indices: 1796708--1797132 Score: 652
Period size: 226 Copynumber: 1.9 Consensus size: 226
1796698 GGGGACCCGA
* * *
1796708 CCGATCCTTGAGTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGG
1 CCGATCCCTGACTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGG
* * * *
1796773 CTGACTAAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 CTAACTAAGGGATACGGAGTTCATTCCCACTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATC
* * * **
1796838 GGACTGGAGCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCGTGTGCTGGTGTCGCAGTTTTCT
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTACTGTCGCAGTTTTCT
1796903 TCGTTGGAGCATCATCAGAGAACCTAACTGG
196 TCGTTGGAGCATCATCAGAGAACCTAACTGG
* * *
1796934 CCGATCCCTGACTTGCGCGTCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGG
1 CCGATCCCTGACTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGG
* ** * * *
1796999 TTAACTTTGGGATACGGAGTTCATTCCCTCTCTCAGAATACGGAGGTCATTCCCAGTCTATGATC
66 CTAACTAAGGGATACGGAGTTCATTCCCACTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATC
*
1797064 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTACTGTCGCATTTTTCT
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTACTGTCGCAGTTTTCT
1797129 TCGT
196 TCGT
1797133 CGGGCCACCA
Statistics
Matches: 177, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
226 177 1.00
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.25
Consensus pattern (226 bp):
CCGATCCCTGACTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGG
CTAACTAAGGGATACGGAGTTCATTCCCACTCTAAGAATACGGAGGTCATTCCCAGTCTAAGATC
GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTACTGTCGCAGTTTTCT
TCGTTGGAGCATCATCAGAGAACCTAACTGG
Found at i:1799605 original size:718 final size:716
Alignment explanation
Indices: 1797036--1799865 Score: 4025
Period size: 723 Copynumber: 4.0 Consensus size: 716
1797026 CTCTCTCAGA
* * *
1797036 ATACGGAGGTCATTCCCAGTCTATGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * * *
1797101 CGGGCATGTGCTACTGTCGCATTTTTCTTCGTCGGGCCACCATCACCGGAGCATTGCCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATAGCCAGAGAAC
** * *
1797166 CTGACCGACGGCATTGGGGTTCTAGCGATCGGGGCGGTCGAGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCG
* * * * * *
1797231 ATGGGTGCTGGTACTTGGCTCTTATAATGGCCTCCTATCCTTTATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1797296 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGG
* *
1797361 GGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1797426 CATGCC----AAA-ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGCAAAAATT
390 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * * *
1797486 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATACAAAGCGAGTCGTCTTGCC
455 TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1797551 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCAATAAAAATGGTATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
1797616 GCACGCAGAAATATAAATATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
585 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
1797681 CCCATCTCTCTGGCCGGCGTAGT----GCCCG--C-CCGCCCGCTCGTTTCTTCGGTTGGCTTAG
650 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCTTCGGTTGGCTTAG
1797739 GC
715 GC
* * *
1797741 ATACGGAGTTCAGT-CCAGTCTAAGATCGGAACGGACCGAGGTTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * ** ** *
1797805 CAGGCATGTGCTGGTACCGTAATTTCCTTCGTC-ACGCACCATTGCCGGAGCACT-GTCAGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA-TAGCCAGAGAA
* * * * *
1797868 CCTGACCGACGGCATTGGGGATCCGACGATCGGGGGAGCTGGGGGGGGTGTGCGCACACGATGTG
130 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC--CGGGGGGTGTGCGCACATGATGTG
*
1797933 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1797998 ACCCCCTTAAAGAGCTTTTGAGATTTTACTGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAAT
* *
1798063 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1798128 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAA
388 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
1798193 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
*
1798258 GCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAATGGC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGC
* * * * *
1798322 ATCGGCACGA-AAAAATATGAAGATGTGCCTAAACACACCTACTACCCTATTGATCCACGGCTTG
581 ATTGGCAC-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
1798386 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCCCACTCGCCCGCCCGCTCGTTTCGTT-
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CGC-C-CG-CCGCCCGCTCGTTTC-TTC
*
1798450 GGTTGACTTAGGC
704 GGTTGGCTTAGGC
* * * **
1798463 ATACGGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCCAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
1798528 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCCCCGGAGCATCA-CCGGATAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAT-AGCCAGAGAA
* * *
1798592 CTTGATCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGG-GTGCTCGCACATGATGTG
130 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG--CGCACATGATGTG
* ** *
1798656 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCTGCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
1798721 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAGTGTATAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAAT
* *
1798786 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCT-AATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
1798850 GTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCGAAA
387 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAA
* * * * **
1798914 AAATTTTGAAAAATCCCAAAGCGCAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
*
1798979 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCCA-AAAAATG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CCATAAAAATG
*
1799043 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1799108 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCTTCGGCT
644 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCTTCGGTT
1799173 GGCTTAGGC
708 GGCTTAGGC
* * *
1799182 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
1799247 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCACCGGAGCATAGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATAGCCAGAGAAC
* *
1799312 CTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACTTGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
1799377 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
1799442 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTATCTAAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGG
* * * * *
1799507 GACACTTTTTTCAATTGGTCACAAAATCTTGTACGCTACGAGTTTTTAGCTGATTTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1799572 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAAAGTT
391 ATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * *
1799637 TTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCT-TGAAAAATTGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAAT-TATGAAAAATAGAAAACGAGTCGTCTTGC
*
1799701 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * *
1799766 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGTGCA
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
1799831 TCCCGCCTCTTTGGCCGGCGTAGTGCCCGCCCGCC
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
1799866 TGTTTGTTTC
Statistics
Matches: 1890, Mismatches: 192, Indels: 73
0.88 0.09 0.03
Matches are distributed among these distances:
703 54 0.03
704 287 0.15
705 13 0.01
709 3 0.00
710 240 0.13
714 3 0.00
716 1 0.00
717 6 0.00
718 459 0.24
719 182 0.10
720 5 0.00
721 5 0.00
722 49 0.03
723 523 0.28
724 58 0.03
725 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATAGCCAGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCTTCGGTTGGCTTAGG
C
Found at i:1800085 original size:26 final size:26
Alignment explanation
Indices: 1800049--1800101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1800039 GTTGACTTAG
*
1800049 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
*
1800075 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
1800101 G
1 G
1800102 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:1800965 original size:26 final size:26
Alignment explanation
Indices: 1800936--1800988 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1800926 GTTGACTTAG
1800936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1800962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1800988 G
1 G
1800989 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1802020 original size:26 final size:26
Alignment explanation
Indices: 1801990--1802042 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1801980 GTTGACTTAG
1801990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1802016 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1802042 G
1 G
1802043 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1802908 original size:26 final size:26
Alignment explanation
Indices: 1802879--1802931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1802869 GTTGACTTAG
*
1802879 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1802905 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1802931 G
1 G
1802932 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1804158 original size:882 final size:881
Alignment explanation
Indices: 1800962--1804716 Score: 4614
Period size: 882 Copynumber: 4.2 Consensus size: 881
1800952 CCCAGTCTAA
* * *
1800962 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
1801027 GCACGTAAAGGGGGACCCGGCCGATGCACGGCTTGCGGATCCCGCCCCTCTGG-TCGGCTGAGCG
66 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCG
* * * *
1801091 TCCGCACGCTCGTTTCGTTTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC
130 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * * *
1801156 AGATCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCGTATTTTTCTTTG-
195 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTTTCTTCGT
* * *
1801219 CTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGGCCGACGGCATTGGGGTTCCGACAATCT
259 C-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
1801284 GGGGGGCCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
323 GGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * ****
1801349 CCCCCTATCCCTCATCAAACCACAAGAACACATGTTCCCTTAAAGAGCATTTGAGATTTTACAGG
387 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
1801414 TTTGTTGCCTGTAGCCATTAAAGAGTCTT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATC
452 TTTGCTGCCAGTAGCCATTAAAGTGT-TTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
1801478 TTGTACACTTCAAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
516 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * **
1801543 TACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTT
581 TACCAAATTTGGG-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
*
1801608 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTACA-GG
645 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGG
*
1801672 ACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCA--CATAGAAATATGAAGATGTGCC
709 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCC
* * * * * *
1801735 TAAACCCACCAACAATCCTATCGATCCACGACTTGCGCATCCTGCCTCTCTGGCCGGCGTAGT--
772 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
1801798 ----------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAG
837 CCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * ** *
1801833 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACTGA--GTTGCGACAATAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * **
1801896 GCACGCAGAGGGGGACCCGACTGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGATTGAGCGC
66 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* *
1801961 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG
* * *
1802026 TTCATTCCCAGTCTAAGATTGGATCAGACCGATGGTTGCGACAGCACATGCTGGGCTCGGGCACG
187 ---------A-TC-------GGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * *
1802091 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAGCCTGACCGA
235 TGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGA
*
1802156 CGGCATTGGGGTTTCGACGATCGGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
300 CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
1802220 CTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC---
364 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * *
1802281 -----C--TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAGAATGGAGACATT
429 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACT
* * *
1802339 TTTTTCAAATGGCCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
494 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
1802404 A-ACAAAATACAAGGATCACGTCTACCCAGTTTGGGCCAAAACTCCTTCCGAAAACATTTTAAAA
559 ACA-AAAATACAAGGATCACGTCTACCAAATTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * *
1802468 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCAGGAAA
623 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
1802533 CTTCACGTGAAGTCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
688 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
1802598 AAAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCCGTC
753 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
1802663 TCTCTGGTCGGCCTAGTGCCCGCCCGCCCGCCCGCCTACCCGCTCGCTCGTTTCGTCGGTTGGCT
818 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCT
1802728 TAG
879 TAG
* ** * *
1802731 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* *
1802796 GCACGTAGAGGGGGA------C--T---CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
66 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* * *
1802850 CCGCATGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
131 CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CC---C--AG--T-CTAAG
*
1802915 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGGGCAGCACATGCTGGGCTCGGGCATG
187 ---A-T--C-G-----GATC--A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
1802980 TGCTGGTAAC-GCATTTTTCTTCGCCGGGGAACCATCGTCGGAG-A--ACC--TG-A-CT-A--G
235 TGCTGGT-GCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * *
1803034 -CGACATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
299 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** *
1803098 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCATA
364 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * *
1803163 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACT
429 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACT
* *
1803228 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTTGCTGAATTTTTTTGTGCATGCCA
494 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
1803293 ACAAAAATACAAGGATCACGTCTACCAAATTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAA
559 ACAAAAATACAAGGATCACGTCTACCAAATTTGG-GCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * * *
1803358 AATCCCAAACTC-TGAAAAGTTTCGAGAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAA
623 AATCCCAAAC-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1803422 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCATG
687 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
1803487 CAAAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
752 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
1803552 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCCCGCTCTTTTCATCGGTTGGATTAG
817 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * **
1803617 GCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGATTGAGGGTTGCGGCAGCAGGATCAGG-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GGC
** * *
1803681 AGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCACACCCCTCTGGCTGGCTGAGCG
65 AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* ** *
1803746 CCCGCACGCTCGTTTCG-TGAGTTAACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCGGAT
130 CCCGCACGCTCGTTTCGTTG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * *
1803810 CAGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGAGCATGGGCTGGTGCTGCATTTTTCTTCGT
194 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGT
* * *
1803875 CGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGG
259 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* *
1803940 GGGGGCCGGGGGGGTGTGCGCCCATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
324 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1804005 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
389 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
1804070 TGTTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACGTTTTTCAAATGGTTACAAAATCTTG
454 TGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* ** * * *
1804135 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAACAAAAGTATAAGGATCATGTCTA-
519 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * ** * **
1804199 CAAAGTTTTGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATTCTGAACCGTAAAAAATTTTG
584 CAAA--TTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
* * *
1804264 AAAATCGTGAAAAATAGAAAGCGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
647 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
1804329 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAAAATATGAAGATGTGCCTAAAC
712 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
*
1804394 CCACCTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC
777 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
1804458 CGCCCGCCAC-ACCGCCCGCTCGTTTCATCGATTGGCTTAG
842 CGCCCGCC-CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * *
1804498 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACAAGACCGAAGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
1804563 GCACGTAGAGGGGGACCCGGTCGATCCTCGACTTGCACATCCCGCCCCTCTGGCTGGCGTAGTGC
66 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGC-T-GAG-
** * *
1804628 CCGCCCGC-CTGCTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
128 -CGCCCGCAC-GCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
1804692 GACCGGACTGAGGGTTGCGGCAGCA
191 GATCAGACCGAGGGTTGCGGCAGCA
1804717 GGATTGGCAG
Statistics
Matches: 2487, Mismatches: 274, Indels: 232
0.83 0.09 0.08
Matches are distributed among these distances:
869 114 0.05
870 1 0.00
871 111 0.04
872 1 0.00
874 4 0.00
875 2 0.00
876 5 0.00
877 10 0.00
878 109 0.04
879 7 0.00
880 1 0.00
881 194 0.08
882 659 0.26
883 151 0.06
884 9 0.00
885 76 0.03
886 97 0.04
887 4 0.00
888 7 0.00
889 290 0.12
890 242 0.10
891 2 0.00
892 2 0.00
893 6 0.00
894 83 0.03
895 124 0.05
896 13 0.01
897 70 0.03
898 63 0.03
900 30 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AATTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:1804745 original size:163 final size:160
Alignment explanation
Indices: 1804473--1804846 Score: 486
Period size: 163 Copynumber: 2.3 Consensus size: 160
1804463 GCCACACCGC
* *
1804473 CCGCTCGTTTC-ATCGATTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACAAGAC
1 CCGCTCGTTTCGA-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGAC
* * *
1804537 CGAAGGTTGTGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCTCGACTTGCACA
65 CGAAGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCACGACTTGCACA
1804602 TCCCGCCCCTCTGG-CTGGC-GTAGTGCCCGCCCG
130 TCCCGCCCCTCTGGTC-GGCTG-AGTG-CC-CCCG
**
1804635 CCTGCTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 CC-GCTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGAC
* * * * * *
1804700 TGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCACGGCTTGCGCA
65 CGAAGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCACGACTTGCACA
* *
1804765 TCCCGTCCCTCTGGTCGGCTGAGTGCCCAC-
130 TCCCGCCCCTCTGGTCGGCTGAGTGCCCCCG
* ** * *
1804795 ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAG
1 CCGCTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1804847 CATACGGAGT
Statistics
Matches: 188, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
159 46 0.24
160 1 0.01
161 2 0.01
162 4 0.02
163 132 0.70
164 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
CCGCTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACC
GAAGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCACGACTTGCACAT
CCCGCCCCTCTGGTCGGCTGAGTGCCCCCG
Found at i:1804849 original size:26 final size:26
Alignment explanation
Indices: 1804820--1804870 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1804810 GTTGACTTAG
*
1804820 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1804846 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1804871 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.