Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 12 of 129
Found at i:1805738 original size:26 final size:26
Alignment explanation
Indices: 1805709--1805761 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1805699 GTGGACTTAG
*
1805709 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1805735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1805761 G
1 G
1805762 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1806008 original size:26 final size:26
Alignment explanation
Indices: 1805972--1806024 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1805962 GTTGACTTAG
1805972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1805998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1806024 G
1 G
1806025 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1806953 original size:17 final size:17
Alignment explanation
Indices: 1806931--1806971 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
1806921 GCGGTAGCAC
1806931 ATGCTGGACTCGGGCAT
1 ATGCTGGACTCGGGCAT
*
1806948 ATGCTGGGCTCGGGCAT
1 ATGCTGGACTCGGGCAT
1806965 ATGCTGG
1 ATGCTGG
1806972 TGCCGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.39, T:0.24
Consensus pattern (17 bp):
ATGCTGGACTCGGGCAT
Found at i:1809550 original size:26 final size:26
Alignment explanation
Indices: 1809510--1809562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1809500 GTTGACTTAG
1809510 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
1809536 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
1809562 G
1 G
1809563 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:1810450 original size:26 final size:26
Alignment explanation
Indices: 1810410--1810465 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
1810400 TGGGTTGACT
1810410 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
1810436 TAAGCATAC-AGAGTTCATTCCTAGTC
1 TAAGCATACGA-AGTTCATTCCCAGTC
1810462 TAAG
1 TAAG
1810466 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:1811302 original size:26 final size:26
Alignment explanation
Indices: 1811273--1811325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1811263 GTTGACTTAG
* * *
1811273 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1811299 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1811325 G
1 G
1811326 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1813878 original size:25 final size:25
Alignment explanation
Indices: 1813844--1813893 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
1813834 GAGGGGGACC
* *
1813844 CGACCGATCCCTGGCTTGCGCATCT
1 CGACCGATCCCCGGCTTGCACATCT
1813869 CGACCGATCCCCGGCTTGCACATCT
1 CGACCGATCCCCGGCTTGCACATCT
1813894 TACCCCTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.14, C:0.42, G:0.22, T:0.22
Consensus pattern (25 bp):
CGACCGATCCCCGGCTTGCACATCT
Found at i:1815554 original size:26 final size:26
Alignment explanation
Indices: 1815524--1815576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1815514 GTTGACTTAG
*
1815524 GCATACCGAGTTCATTCCTAGCCTAA
1 GCATACCGAGTTCATTCCCAGCCTAA
* *
1815550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGCCTAA
1815576 G
1 G
1815577 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGCCTAA
Found at i:1817328 original size:26 final size:26
Alignment explanation
Indices: 1817298--1817353 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
1817288 TGGGTTGACT
1817298 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1817324 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1817350 TAAG
1 TAAG
1817354 ATCGGATCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:1817898 original size:885 final size:886
Alignment explanation
Indices: 1814660--1818958 Score: 5622
Period size: 899 Copynumber: 4.9 Consensus size: 886
1814650 GCTTAGGCAG
* * * * * * * *
1814660 ACGGAGTTGATTCCCAGTCAAAGATCAGACCAGACCGAGGGTTACAGTAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCA
** * * * *
1814725 GGCATGTGCTGGTGCTGCATTTTTCGTC-TCCAGGGCACTATCGTCGGAGCATCACTGGAGAACC
65 GGCATGTGCTGGTGCCACATTTTTCTTCGT-CGGGGCACCATCGTCGGAG-AAC-CT---G-ACC
* * *
1814789 TGATCGACAGCATT-GTGTTCCGGCGATCGGGGGGG-TGGAGGGGTGTGCGCACATGATTTGCGA
123 -GA-CG---GCATTGGGGTTCCGACGATCGGGGGGGCTGG-GGGGTGTGCGCACATGATGTGCGA
* * *
1814852 TTGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACA
182 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1814917 CCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGG
247 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1814982 GACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
312 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
1815047 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-T
377 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
*
1815111 TTAAAAAATCTCGAA-CTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
442 TTAAAAAATCTCGAACCT-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
1815175 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
506 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1815240 GGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
571 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
1815305 TCCCGTCCCTCTGACCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGATTAGCTTAGGC
636 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
** * * * * *
1815366 ATACGGAGTTCATTCCCAGTCTAAGATCAGTCCAGATAGAGGGTTGTGGCAGCAGGATCGACAGC
701 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * **
1815431 TCGCAAAGGGGGCCCCGATCGATCCCCATCTTACGCATCCCGCCCCTCTAGCCAGGTTGAAAGCC
766 ACGCAAAGGGGG-CCCGACCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCC-GGCTGAGCGCC
* * *
1815496 CGCACGCTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCTAGCCTAAGCAT
829 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
1815554 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACGAGGGTTGCAGCAGCACATGCTGGGCTCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * *
1815618 AGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACTTGACCGACGAC
65 GGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGC
* * * *
1815682 ATTGGGGTTCCGACGATC--AGGGGC-----GAT-TGCACACATGATGTGCGATGTGTGCTGGTA
129 ATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
1815739 CTTGGCCCTTATATTGGCTCCCTATCACTCATCAAACCACGAGAACTCATACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
1815804 ATTTGAGAATTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTT
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
1815869 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGATTTTTTTTATGCATGCCAACAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
1815934 ATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCGTTCTTAAAAAATTTTAAAAAATCCC
389 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
* * * *
1815999 GAACCGCAAAAAGTTT-GAAAAATCGTGAAAAGTAGAAAACGAATCGTCTTGCCATGAAACTTCA
454 GAACCTCAAAAAGTTTCG-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
1816063 CGTGAAGGCTTAAGGGA-CATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACGTAGAAA
518 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
1816127 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-CCTCGGCTCTC
583 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTC
* * * * * *
1816191 TGGCCGGCATAGAGCCCGCCCGGCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTC
647 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
1816256 ATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAGGATCAGTAGGATGCAAAGGGG
712 ATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGG
* * * * * *
1816321 ACCCGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
777 GCCCGACCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTT
* * *
1816386 CGTGGTTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAGCAT
842 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
1816431 ATGGAGATCATTCCCAGTCTAAGATCGGACCAGTCCAAGGGTTGCGGCAGCACATGTTGGGCTCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * *
1816496 GGCATGTGCCGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCACTGGAGCATCGCCGAAGAACG
65 GGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCAT--C----G--TCG--G-AGAACC
* * * * *
1816560 TGATCGACGGCATTGGGGTTCCGATGATCGGGGGGCCAGGGGGTGGTGTGCGCACATGATGTGTG
118 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-TGGGG-GGTGTGCGCACATGATGTGCG
* * * * *
1816625 ATGGGTGCTAGTACTTGGCCCTTAAATTGGACCCCTATCCCTCATCAATCCTTGAGAACTCACAC
181 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1816690 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
246 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1816755 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-ATTTTAGCTGAATTTTTTTGTG
311 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1816819 CATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCAAAAACTCCTTCTGAAAAATT
376 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * *
1816884 TTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCTTGAAAAATACAAAAGGACTCGTCTTG
441 TTTAAAAAATCTCGAACC-TCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
1816948 CCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCAT
505 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
1817013 TGTTACGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
570 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
1817078 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGG
635 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * *
1817143 CATACGGAGTTCATTCCCAGTCCAAGATTGGACCAGATTGAGGGTTGCAGCAGCAGGATCGGCAG
700 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
1817208 CACGCAGAGGGGGCCTCGATCAATCCCCGTCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCC
765 CACGCAAAGGGGGCC-CGACCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
1817273 CGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCAT
829 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* *
1817331 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGGGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC-GAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * * **
1817396 GGCATGTGCTGGTGCCACATTTTTCTTCG-C-CGG-AGCATTGTCGGAGAACCTAACCGGTGGCA
65 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
* *
1817458 TTGGGG-TCACGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTCGTA
130 TTGGGGTTC-CGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
1817522 CTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1817587 ATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
1817652 AAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTTAATTTTTTTATGCATGCCAAAAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
1817717 ATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAAAAAATTTTAAAAAGTCT
389 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCT
* *
1817781 CGAACCTCAAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
453 CGAACCTCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
1817846 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
518 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
1817911 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTTT
583 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
1817976 GGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTGAGCCATACGGAG
648 GGCCGACGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* ** * * * * ** * * * * * ** *
1818041 TTTATTCCCAGTCTAAGATCAGACTGGACCAAGGGCTGATGTAACAGGATTGGTAGTACATAGAG
709 TTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAG
* * *
1818106 GGGGACCCGACCGATCCCCAG-CTTACGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCACACGCT
774 GGGG-CCCGACCGATCCCC-GTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * *
1818170 CGTTTCGTGGGTTCAGTTAGGCAAACGGAGCTCATTCCCAGTTTAAGCAT
837 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
1818220 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAAGGTTGCGGCAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * *
1818285 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGACGGCA
65 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCA
** * *
1818350 TTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
130 TTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
1818415 TTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
1818480 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
1818545 AATGGTCACAAAATGTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
1818610 TACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTT-TCG----------AAAAAATCTT
390 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCTC
* * * * *
1818663 GAAGCACAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACATCAC
454 GAACCTCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
1818728 GTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
519 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
1818793 ATTAAGATGTGCCTAAACCAACCTACCACCTTATCGATCCACGGCTTGCGCATCCCG---C-C-G
584 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
1818853 G-CGTA-GTGGCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTC
649 GCCG-ACGTAG-TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* *
1818916 ATTCCCAATCTAAGATTGGACCGGA-CTGAGGGTTACGGCAGCA
712 ATTCCCAGTCTAAGATTGGACCGGATC-GAGGGTTGCGGCAGCA
1818959 CATGCTGAGC
Statistics
Matches: 2993, Mismatches: 350, Indels: 146
0.86 0.10 0.04
Matches are distributed among these distances:
871 1 0.00
872 64 0.02
874 2 0.00
875 370 0.12
876 101 0.03
877 90 0.03
878 96 0.03
879 96 0.03
880 1 0.00
881 188 0.06
882 4 0.00
883 12 0.00
884 184 0.06
885 294 0.10
886 38 0.01
887 4 0.00
888 2 0.00
889 292 0.10
890 6 0.00
891 25 0.01
892 287 0.10
893 69 0.02
894 29 0.01
897 4 0.00
898 163 0.05
899 390 0.13
900 181 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACGAGGGTTGCGGCAGCACATGCTGGGCTCAG
GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGA
ACCTCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGCCC
GACCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
Found at i:1820009 original size:713 final size:698
Alignment explanation
Indices: 1818216--1820365 Score: 3078
Period size: 713 Copynumber: 3.1 Consensus size: 698
1818206 CCCAGTTTAA
* * * *
1818216 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAAGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTACGGCAGCACATGCT-GG
* *
1818281 CTCG-GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGA
65 CTCGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGG
*
1818345 CGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
130 CGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1818410 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCAAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1818475 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * * *
1818540 TTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAC
325 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
1818605 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATCT------T
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAT
* * * * * *
1818663 ---GAAGCACAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACAT
455 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
1818725 CACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
520 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* *
1818790 AATATTAAGATGTGCCTAAACCAACCTACCACCTTATCGATCCACGGCTTGCGCATCCCG---C-
585 AATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGTCTCT
1818851 C-GG-CGTAGTGGCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
649 CTGGCCGTAGT-G-C--CCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * * * *
1818903 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTACGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTACGGCAGCACATGCTG-G
* * **
1818968 CTCCA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGATTGG
65 CTCGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGG
** * * ** *
1819032 TAGCATTAGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 CGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1819097 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
1819162 GAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
1819227 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGAA
325 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
1819292 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAA
*
1819357 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
454 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1819422 TCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
1819487 AAATATGAAAATGTACCTAAACCCACCTACCACACTATCGATCCACGGCTTGTGCATCCCGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
1819552 TCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAG
648 TCTGGCCG---TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * * * * *
1819606 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTACGGCAGCACATGCTGGC
*
1819671 TTGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 TCGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---GC--CG---GAGA
*
1819736 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGG-CGGGGGGTGTGCGCAGATGATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* **
1819800 GATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
1819865 CCCCCTTAATGAGCATTTGATATTTTACAGGTTTTCTGCTAGTAGCCATTAAAGTGTCTAAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
1819930 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
315 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1819995 GTATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
380 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAA
* * * * *
1820060 TTTTAAAAAATCCCAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTG
444 ATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
1820125 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1820190 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
574 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGC
* * * *
1820255 ATCCCGTCTCTCTGGCCGGTGTAGTACCCGCCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTAG
638 ATCCCGTCTCTCTGGCC---GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
* * **
1820319 GCATACGGAATTCATTCCCAATCTATGATCAAACCAGACCGAAGGTT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTT
1820366 GTGGCAGTAG
Statistics
Matches: 1304, Mismatches: 119, Indels: 54
0.88 0.08 0.04
Matches are distributed among these distances:
686 1 0.00
687 380 0.29
688 16 0.01
689 8 0.01
695 1 0.00
698 169 0.13
699 1 0.00
701 1 0.00
702 4 0.00
703 133 0.10
704 2 0.00
705 1 0.00
706 2 0.00
707 4 0.00
709 2 0.00
711 2 0.00
713 540 0.41
714 36 0.03
716 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (698 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTACGGCAGCACATGCTGGC
TCGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
TTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
Found at i:1820509 original size:26 final size:26
Alignment explanation
Indices: 1820479--1820530 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1820469 TTTACTTAGT
1820479 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
* *
1820505 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
1820531 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:1821411 original size:26 final size:26
Alignment explanation
Indices: 1821382--1821434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1821372 GTTGACTTAG
* *
1821382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
1821408 GCATACAGAGTCCATTTCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
1821434 G
1 G
1821435 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:1821869 original size:902 final size:900
Alignment explanation
Indices: 1819606--1838228 Score: 23500
Period size: 900 Copynumber: 20.8 Consensus size: 900
1819596 ATTGGCTTAG
* * ** *
1819606 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1819671 -TTGAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAG
66 CTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
** * *
1819735 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCGGGGGGTGTGCGCAGATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* **
1819800 GATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
1819865 CCCCCTTAATGAGCATTTGATATTTTACAGGTTTTCTGCTAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1819930 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1819995 GTATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * *
1820060 TTTTAAAAAATCCCAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1820125 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
***
1820190 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
1820255 ATCCCGTCTCTCTGGCCGGTGTAGTACCCGCCCGCCCG--TCCAC-TCGTTTCGTCGGTTGGCTT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCC-CGTCGTTTCGTCGGTTGGCTT
* * * * * * * * *
1820317 AGGCATACGGAATTCATTCCCAATCTATGATCAAACCAGACCGAAGGTTGTGGCAGTAGGATCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
1820382 CAACACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGT
779 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
1820447 GCCCGCACGCTCGTTTCATGGGTTTACTTAGTCATACGGAGTTCATTCCCAATCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1820504 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-CGATCTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * * * * **
1820568 GCTCGGGCAAGTGCTGGTGCCTCATTTTTCTTCGTCGAGGCACAATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
*
1820633 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGCGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * *
1820698 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCATCAAACCTCGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1820763 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1820828 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
1820893 GTGCGTGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAATTCCTT-TCAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * * * *
1820957 AAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATTGTAAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
1821022 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1821087 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTT
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1821152 CGCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCTCGCCCGCCTACCCGTAAGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-CCCGT-CGTTTCGTCGGTTG
* * * * * * *
1821217 GCTTAGGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGGTGCAGCAGCAAGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA
* * * * *
1821282 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCCTTCTGGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
1821347 GAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1821408 GCATACAGAGTCCATTTCCAGTCTAAGATCAGACTAGACCAAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1821473 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGAACCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * *
1821538 ACCTGACCGACTTCTTTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
1821603 ATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1821668 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
1821733 GGACACTTTTTTCAAATGGTCTCAAAATCTTGAACATTTAGAGTTTTTAGCTGAAATTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
1821798 CTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCCTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
1821863 TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
1821928 CATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
1821993 GGCATGCAGAAATACAAAGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
1822058 TCCCGTCTCTCTGGTCGACGTAGTACCCGCCCGCCCGCC-CGC-TCGTTTCGTCGATTGGCTTAG
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGCTTAG
* * * * *
1822121 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGACAGCAGGATCGGTA
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
1822186 GCACGTAGAGAGGGACCAG-GCTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
781 GCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
1822250 CCCGCACG--C---TCGT---TT--C---GGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1822293 GCATACGGAGTCCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
1822358 CTTAGGCATGTGCTGCTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCCGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
1822423 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGTGCACATCATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
*
1822488 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1822553 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
1822618 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAAGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
1822683 TGCATGCCAAAAAAAATAAAAGCATCATGACTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* ** * *
1822748 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAGCGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1822813 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1822878 TTGGCATGGATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
1822943 CATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCACCCG-----C-TCATTTCGTTGATTCGCTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGCTT
** * * * * *
1823002 AGGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGGAGGATCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * ** * * *
1823067 CAACATGCAGAGAGGGACCCGATCGATCCCCGGCTTAAGCATCCCGCCCCTTTGGCCGACTGAAC
779 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
1823132 ACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
1823189 GCATACAGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
1823254 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTAGGGCACCATCGCCGGAGCATCGCCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG-AG
* * * *
1823319 AAACTGACCGGCGGCATTAGGTTTTCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* ** *
1823384 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAGCTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
1823449 TACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1823514 TAGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 T-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
1823579 TATGCATGCCGACAAAAATACAACAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * ** * *
1823644 AAAATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAATCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1823709 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATGAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1823774 CATTGGCATGCTA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCCT
582 CATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1823838 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACC-CGTCCGTCTCATTTTGTCAG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTC--CCG--TCGTTTCGTCGG
* ** ** * * *
1823902 TTGGCTTAGGTATACGGAGTTCATTCGTAGTCTAAGATTGGACCAGA-TCGAGGGTTGGGGTAGC
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGC
* * * *
1823966 AGGATCGACAGCACGCAGAGGGGGACCC-AGTTGATCCCCGGCTTGCGTATCCCACCCCTCTGGC
771 AGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
1824030 TGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC-A
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1824094 A
900 A
1824095 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-T--A-AG---------A-TC--AGA-C---T-GGAC
* * * *
1824160 CGAGGGTTGCGGTAGCATATGCTGGGCTCGGGCATGTGCCTGGTGTCACATTTTTCTTCGTCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG-CTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** **
1824225 GCACCATTGTCGGAGCATCGTCGGAGAACCTGAGTGGCGGTGTTGGGGTTCCGACGATCGGGGGG
104 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
*
1824290 ACCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1824355 TCCCTCATCAAACCTCGAGAACTCACACCGCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1824420 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1824485 TTCGAGTTTTTAGCTGAATTTTTTTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCAAG
363 TTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
1824550 TTTGGGGCCAAAACTCCTACTGAAAAATTTTTTAAAAAAT-TCGGAACCGTAAAATGTTTCAAAA
427 TTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAA
* * * *
1824614 ATCATAAAAAATAGAAAACGAGTCGTATTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATT
490 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
1824679 GTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCCTAAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* ** * * * *
1824744 CCTACCACCCTATTGATCCACGGCTTATGCATCCTGTCACTTTGGCCGGCGTAGTGCCCGTCCGC
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * *
1824809 CTGCCCGCCCGCTCATTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATTAG
685 CCG-CCTCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** * * * *
1824874 ATCGGACCGAGGGTTGCCACAGCAGGATTGACAGCACGCAGAGGGGGACCCGA-CGGATCCCTGA
748 ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGG
** * * * * *
1824938 CTTGCTTATCCCG-CCCTTTGGCCAGCTGAACGCTCGCACGCTCGTTTCGTGGCTTGACTTAGGC
812 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
1825002 ATACGAAATTCATTCCCAGTCTAA
877 ATACGGAGTTCATTCCCAGTCTAA
** * * *
1825026 GCATACGGAGTTTCATT-CCATGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGCACATGCTG
1 GCATACGGAG-TTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTG
1825090 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
1825144 GAACCTGATCGGCAGCATTAGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
1825209 GCAATGGGTGCTGGTATTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
1825274 CA-CCCCTTCAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTATTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1825338 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTTAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
1825403 GTGCATGCCAAC-AAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * **
1825467 AATTTTAAAAAATCTCAAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1825532 TGCCATGAAACTTCACGTGAAGCCTTAAGCGACCACTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
1825597 ATTGGCACACAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
1825662 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCCACCCATCCGCCAGCCCGCTCGTTTCGTAGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-TCCCG-TCGTTTCGTCGGTTGG
** * * *
1825727 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCATGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* ** * ** ** * *
1825792 TGGCAGCACGCAGAATGGGACCCGGTCGATCCTTGGCTTGCGCATCCTACCCTTCTGGCCGACTG
776 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
1825857 AGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1825917 G-AT-C-G-G---------A-T-T--G----GACT--A---AGGGTTGCAGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
*** * * *
1825956 CTCGGGCATGTGCTGGTGCAAAATTTTTCTTCGTCGGGGCACCATCGTCGGACCATCGTCCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CCGGAG
* * * * * **
1826021 AACCTGATCGGTGGCATTAGGGTTTCGACGATTGACAGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
1826086 GTGATGGGTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1826150 CACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1826215 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1826280 GTGCATGGCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT-CTTTTCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * * * *
1826344 AAGTTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* ** ** * *
1826409 ATGCCATGAAACTTC-CTGTGAACCCTCGAGGGACCATTGTATGAATTTACAAGGCATAAAAATT
517 TTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
1826473 TCGTTAGCATGCAAAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACAGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1826538 GTGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCACGCCCG-CTCGC-TCGTTTCGTCGGTTGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGG
* * * **
1826601 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGATAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * ** * * **
1826666 CGACAGCA-GAAAGAGGTTGACCCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGATT
776 CGGCAGCACG-CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * ** *
1826730 GAGCGCCCGCACGCTCGTTTCCTCGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1826791 GCTTACAGAGTTCATTCCTAGCCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1826856 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
1826921 AACTGACCGGCAGCATTAGGTTTCCGACGATCGGGGGTGGCCAGGAGGGGTGTGCGCACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGG-GGCC-GG-GGGGTGTGCGCACATGATG
* * *
1826986 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1827051 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1827116 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
1827181 TGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
1827246 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAGAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1827311 TTGCCATGAAACTTCACGTGAAGCCTTAAGCGACCACTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
1827376 CATTGGCACACAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
1827441 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCACCCATCCGCCAGCCCGCCTCGTTTCGTAGGTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-TCCCG--TCGTTTCGTCGGTT
* * * * * *
1827506 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AAATCGAGGGCTGTGGTAGCAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAG
* * * * *
1827570 GATCAGCAGCACGCAAAGGGGGACCCGGTTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
773 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1827635 CTGAGC-ACCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTCCCATTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1827697 GCATACGGAGTTCACTCCCAGT-TAAGATCA-AATCAGACCGAGGGTTGTGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* *
1827760 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
1827825 AACCAGACCAGCGGTATTGTGGTTCCGACGATCGGGGGGGCCGGGGGGATGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG-TGTGCGCACATGATGT
* * * *
1827890 GCGATGGGTGCTGGCACATGGACCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1827955 CACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1828020 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1828085 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * ** **
1828150 AATTTTAAAAAATC-CTAAACCGAAAAAAGTTTTGAAAATCCAGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1828214 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCAT--AAA-GG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
1828276 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCCTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1828341 CGCATCCCGTCTCTCTGGGCGACGTAGTGCCCGTCCGCCCGCTCGCCCGCCCACTCGTTCCGTCG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CTCCCG-----TCGTTTCGTCG
* * * ** * *
1828406 GGTGGCTTAGGCATACAGAGTTCACTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGACAGC
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGC
* * * * * * *
1828471 AGGATTGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCAGCCCGCCCCTATGGCC
771 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
1828536 GGTTGAGCGCCCGCACGATTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** **
1828601 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATTGAGGGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
1828665 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
** * * * *
1828719 AACCTGACCAACGGTATTAGGGTTCCAACGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
1828784 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1828849 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1828914 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1828979 GTGCATGCCAAAAAAAATACAAGGATCACGTCTCCCAAGTTTGTGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * *
1829044 AATTTTCAAAAATCCCTAACCGTAAAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1829109 TGCCATGAAACTTCACGTGAA-GCTTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
518 TGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
1829173 CATTGGTACGCAAAAATATGAAAATGTGGCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1829238 CACATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTCCCG-TCGTTTCGTCGGTTG
* * * * *
1829303 GCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATC-GTACTGGA-TCAAGGGCTGCGGTAGCAG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACT-GAGGGTTGCGGCAGCAG
* * ** * * *
1829366 GATCAGCAGCACGCAGAGGGTGACCCGGCCGATCTCCGGCTTGCGCATCCCGTCCCTTTGGCCGG
773 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
1829431 CTGAACGCCCGCACGCTCGTTTCATGGGTTCACTTAGGTAGACGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
1829494 CCATACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTGCAGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1829558 GCTCGGGCATGTGCTGCTGTCGCATTTTTCTTCATCGAGG---CA----C----CATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
1829612 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGCCTGGGGCGTGTGTGCAC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC------G--GGGGGCC-GGGGGGTGTGCGCAC
* *
1829677 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCA
186 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
1829742 GAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1829807 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1829872 TTTTTGTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
1829937 CTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAGAATCGTGAAAATTAGAAAACGA
446 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
1830002 GTCGTCTTGCCATGAGACTTCACGTGAAGCCTTAAGGGACCACTGTATGAATTTGCAAGCCATAA
511 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
1830067 AAATAGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCAC
576 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
1830132 AGCTTGCACATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC-CGCCAGTTCATTTCA
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTC-CC-G-TCGTTTCG
* * * ** * *
1830196 TCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTAGATTGGA-TCGAGGGCTGTGG
703 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGG
* ** ** * *
1830260 TAGCAGGATCAACAGCACAAAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCT
767 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
1830325 GGTCGGCTGACCGCTCGCACGCTTGTTTCGTGGGTT-AC---GGCAGAAGGAGTTCATTCCCAGT
832 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1830386 CTAA
897 CTAA
* * * *
1830390 GCATACGGAGTTCACTCCCAGT-TAAGATC-GAACCGGACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
1830453 GCTCGGGCATGTGCTGGTGCCACATTTTTC-T--TCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** * * *
1830515 AACCAGATCGGCGGTATTACGGTTTCGGCGATCGGGGGGGTCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-C-CGGGGGGTGTGCGCACATGATG
* * * *
1830580 TGCGATGGGTGGTGGCACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1830645 GCA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1830709 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GCCTTAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTT
* * * * *
1830773 GTGTGCATGCCAAAAAAAATACAAGGATGATGTCTACCAAGTTTTGGGCCAAAACTCCTT-TCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GA
*
1830837 AAAAATTTTAAAAAAT-TCAGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGT
450 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
1830900 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
***
1830965 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1831030 CTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CT--CGT--TTT-GTCGGT
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGT
* * * ** * *
1831089 TGGCTAAGGCATACGGAGTTCACTCCCTGTCTAAGATTGGACCGGA-TCGAGGATTACGGCAGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCA
* * * * * * * **
1831153 AGATCGGTAGCACGCAAAGGGGGACCAGATCGATCCCTGGCGTGTGCATCCCGCCCCTCTGGTTG
772 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * **
1831218 ACAGAGCGCCCGCACG--C---TCGTGGGTTGACTTAGGCATACGGAGTTCATTGTCAGTCTAA
837 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** *
1831277 GCATATGGAGTTCATTCCCAGTCTAGGATCAGACTGGACTAAGGGTTGCGGTGGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1831342 ATCGGGCATGTG-TCGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CAT---CGGAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * **
1831395 AACCTGACTGGCGGCATT-GGGTTTCGACGATCGGGGGGTCGGGGGTTGCACGCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1831459 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTAACCCTCATCAAACCTCCAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1831523 CCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1831588 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGC
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
1831653 GCATGCCAACAAAAATACAAGGATCACG--T--C----TTGGGGCCAAAATTCCTT-TCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAA
* * * *
1831709 ATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTC
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
1831774 GCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCAGAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1831839 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** **
1831904 CATCCCGTCTCTCTGGCCGATGTAGTGCCCATCCGCCCGCC-GGC-TCGTTTCGTCGGTTGGCTT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGCTT
** * * *
1831967 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATTGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
1832032 CAGCACGCAGAGGTGAACCC-AGTCGTTCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAG
779 CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
1832096 CTTCCACACGCTCGTTTCGTGGATTGACTTTGGCATACGGAGTTCTTTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
1832154 GCATACGGAGTTCATTCCCAATCTAAGATC-GAATCAGAGTGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
1832218 CCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
*
1832283 AACCTGACCGGCGGCATTGGGATTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGT
*
1832348 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
1832413 CACACCCTTAAAGTGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1832478 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
1832543 GTGAATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGATCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
1832608 AATTTTAAAAAATCTTGAACCGTAAAAAGCTTCGAAAAAT-GTGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1832672 TTGCCATGAAACTTCACGTGAAGGCTTATGGGACCACTATATGAATTTAC-AGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1832736 CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
1832801 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG-----C-TCGTTTCGTCGGTTGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGC
* ** * *
1832860 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGCAGTAGCAGGAAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGG-AT
* * * * * *
1832925 -GGCAACACGCAGAGAGGGACTCGATCGATCCCCAGCTTGCGAATCCCGCCCCTCTGGCCGGTTG
776 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
1832989 AGCGTCCACACGCTC-ATTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
1833049 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1833114 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
1833179 ACTTGGCCAGCGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTG
*
1833244 CGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1833308 A-CCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1833372 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTCTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1833437 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * *
1833501 AGTTTTAAAAAATC-CTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1833565 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1833630 CATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * **
1833695 TGCATCCCGCCTCTCTGGCCGGTGCAGTGCCCACCCGCCCATCCGCTAGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCTCCCG-TCGTTTCGTCGGTTG
* * * *
1833760 GCTAAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGCAGG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGG
* * * *
1833824 ATCGGCAGCACGCAGAGGGGGACCCGATCGATTCCTGGCTTGCGCATCCCGCCCCACTGGCTGGC
774 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1833889 TGAGCG-CCTCACGCTCGTTTCATGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1833950 G-AT-C--AG---------A--C-----T-AGA-T----CGAGGGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1833989 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGAGGCACCAT--------CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
1834043 ACCTAACCGGCGGCATTGGGGTTCCGGTC-ATCAGGGGGGCCGGCCGGGGTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGG--GGGGTGTGCGCACATGATG
* *
1834107 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1834172 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1834237 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTAACACTTTGAGTTTTTAGCAGAATGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTT
* *
1834302 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
** *
1834367 AAAATTGAAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAATT-TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
1834432 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1834497 GGCATTGGCATGGAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** * * *
1834562 TACGCATCCCGTCTCTCTGGCAGACGTAGTTCCCGTTCGCCCGCC-CGC-TCATTTCATCGGTTG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTG
* * * * *
1834625 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGTAGCAAGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA
* * * * * * * * * *
1834690 TCTGCAGCACACAGAGGGAGACCCGACCGATTCCTGACTTACGCATCTCGCCCCTCTGGTCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
1834755 GA-CTTCCCGCACGCTCGTTTCGTGGATTGAGTTTGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
1834816 GCATACAAAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1834881 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCTCCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
1834946 ACCTGACTGGCGGCATT-GGATTCCAACGATCGGGGGGGCCGAGGGGGGTGTGAGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * *
1835010 ACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1835075 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1835140 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
1835205 GTGCATGCCAAC-AAAATACGAGGATCACATCTACCAAGTTTGGGGCTGAAACTCCTT-TCG-AA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * *
1835267 AAATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1835332 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1835397 CATTGGCACGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCAATTGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
1835462 TGCATCCCGTCTCTCTTGCCGGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTCG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTCCCG-TCGTTTCGTCGGTTG
* * * * *
1835527 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGCAGTAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA
** * * * * **
1835592 TCGGTTGCACGCAAAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCATCCCTCTGGCCGGCT
775 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
1835657 GAGCACCTGCACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1835718 GCATACGGAGTTTATTCCCAGTCGAAGATC--A---GACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1835778 CTTGGGCATGTGCTGGTGCCACATTTTTATTCGTCAGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
1835843 ACCTGACCGACGGCATTGGGGCACCGACGACATTGGGGTTCCGGCGATCGAGGGGCCGGGGGGTG
131 ACCT----GAC--C-----GG---CG--G-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
* *
1835908 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAA
179 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
1835973 ACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
244 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
1836038 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTCTTT
309 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
1836103 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
374 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
1836168 ACTCCTTCTGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGGTTCAAAAATCGTGAAAAATAG
439 ACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
*
1836233 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
504 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
1836298 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AACCCACCTGCCACCTTATT
569 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1836362 GATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGTCCGCCCG-CT--CGT--T
634 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGT
* * *
1836422 TT-GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTG
699 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
* * * * * *
1836486 TGGCAGCAGGATTGGCAGCAC-CTAGAGCGGGACCCGA-CTGATCCGCGGCTTGCACATCCCACC
764 CGGCAGCAGGATCGGCAGCACGC-AGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCC
* * * * * * **
1836549 CCTCTGGCTGGCTGAGTG-TCGCACACTCATTTCGTGGATTGACTTAGGCATATAGAGTTCATTC
827 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
1836613 CCAGTCTAA
892 CCAGTCTAA
* * * * * * *
1836622 GCATACGAAGTTTATTCCCAGTCGAAGATCGGACTGGACCGAGTGCTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1836687 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG---CAT--------CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
1836741 ACCTGACCGACGGCATTGGGGTTCCGACGATAGAGAGGCCGGGGGATGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * * *
1836806 ATGGGTGCTGGTAGTTGGCCCTTATATCGGCCCCCTATCCCTCTTCAAACCTTGAAAACTCGCAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1836871 CCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1836936 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
1837001 CATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTCAGGCCTAAACTCATTCTGAAATAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * **
1837066 TTTCAAAAATCACGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
1837131 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
1837196 GGCATGCAAAAATATGGAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTACGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
1837261 T-CTGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCG-----C-TCGTTTCATAGGTTGGCTTAC
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGCTTAG
* * * * ** * * *
1837319 GTATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCAAGGGTTGTGGCGGCAGGATCGACA
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
1837384 GCACGCAGAGCGGGACCCGATCGATCCCCGTCTTACACATCCCACCCCTTTGGCCGGCTGAGCAC
781 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
1837449 CCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
846 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
1837500 -C-TA---AG---A-T--C-G-----GA-C---C-GGACCGAGGGTTGCGGTGGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGG-
** * *
1837543 ATTC-GGCATGT-CTCGGTGCCACATTTTTCTTCATCGGGGCACCAT---C---G--T---CGGA
65 GCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
1837595 GAACCCGACCGACGACATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGT
* * *
1837660 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1837725 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1837790 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGAACACTTCGATTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1837855 ATGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGCCCAAAACTCCTTC-CAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
1837919 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1837984 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCAGAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1838049 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1838114 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGTCCGCCCGCCT---GTTCGTTTCGTCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCG-TCGTTTCGTCGGTTGGC
* *
1838176 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
1838229 CGTAGCACAT
Statistics
Matches: 15562, Mismatches: 1784, Indels: 795
0.86 0.10 0.04
Matches are distributed among these distances:
855 2 0.00
856 282 0.02
857 282 0.02
859 4 0.00
860 1 0.00
861 64 0.00
863 2 0.00
864 100 0.01
865 195 0.01
866 67 0.00
867 105 0.01
868 323 0.02
869 216 0.01
870 5 0.00
871 4 0.00
872 122 0.01
873 5 0.00
874 177 0.01
875 99 0.01
876 270 0.02
877 316 0.02
878 256 0.02
879 14 0.00
880 25 0.00
881 589 0.04
882 79 0.01
883 144 0.01
884 5 0.00
885 170 0.01
886 8 0.00
887 536 0.03
888 206 0.01
889 22 0.00
890 322 0.02
891 181 0.01
892 280 0.02
893 699 0.04
894 668 0.04
895 468 0.03
896 583 0.04
897 455 0.03
898 834 0.05
899 174 0.01
900 1462 0.09
901 151 0.01
902 1416 0.09
903 567 0.04
904 468 0.03
905 344 0.02
906 132 0.01
907 289 0.02
908 5 0.00
909 63 0.00
910 1 0.00
911 7 0.00
912 218 0.01
913 109 0.01
914 168 0.01
915 13 0.00
923 2 0.00
924 2 0.00
925 2 0.00
926 1 0.00
927 3 0.00
928 1 0.00
930 117 0.01
931 341 0.02
932 275 0.02
933 45 0.00
934 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTCCCGTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1822303 original size:26 final size:26
Alignment explanation
Indices: 1822267--1822319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1822257 GCTCGTTTCG
*
1822267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1822293 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1822319 G
1 G
1822320 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:1823199 original size:26 final size:26
Alignment explanation
Indices: 1823163--1823215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1823153 GTTGACTTAG
* * *
1823163 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1823189 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1823215 G
1 G
1823216 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1824104 original size:25 final size:26
Alignment explanation
Indices: 1824070--1824147 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1824060 GTTGACTTAG
*
1824070 GCATATGGAGTTCATTCCCAGTC-AA
1 GCATACGGAGTTCATTCCCAGTCTAA
1824095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1824121 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1824147 G
1 G
1824148 ATCGGATGGG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 22 0.44
26 28 0.56
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1826804 original size:26 final size:26
Alignment explanation
Indices: 1826768--1826817 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1826758 GACTTAGGCA
*
1826768 TACAAAGTTCATTCCTAGTCTAAGCT
1 TACAAAGTTCATTCCTAGCCTAAGCT
*
1826794 TACAGAGTTCATTCCTAGCCTAAG
1 TACAAAGTTCATTCCTAGCCTAAG
1826818 ATCAGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (26 bp):
TACAAAGTTCATTCCTAGCCTAAGCT
Found at i:1828611 original size:26 final size:26
Alignment explanation
Indices: 1828575--1828627 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1828565 GTTGACTTAG
1828575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1828601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1828627 G
1 G
1828628 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1831287 original size:26 final size:26
Alignment explanation
Indices: 1831251--1831301 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1831241 GTTGACTTAG
**
1831251 GCATACGGAGTTCATTGTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1831277 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1831302 GGATCAGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1832164 original size:26 final size:26
Alignment explanation
Indices: 1832128--1832180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1832118 ATTGACTTTG
* *
1832128 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1832154 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1832180 G
1 G
1832181 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1833059 original size:26 final size:26
Alignment explanation
Indices: 1833023--1833075 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1833013 GTTGACTTAG
1833023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1833049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1833075 G
1 G
1833076 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1833555 original size:27 final size:27
Alignment explanation
Indices: 1833497--1833555 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
1833487 ACTCCTTTCG
**
1833497 AAAAAGTTTTAAAAAATCCTGAACCAT
1 AAAAAGTTTTAAAAAATCCTGAAAAAT
* *
1833524 AAAAAG-TTTCAAAAATCGTGAAAAAT
1 AAAAAGTTTTAAAAAATCCTGAAAAAT
1833550 AGAAAA
1 A-AAAA
1833556 TGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCCTGAAAAAT
Found at i:1835870 original size:17 final size:17
Alignment explanation
Indices: 1835848--1835880 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1835838 GGAGAACCTG
*
1835848 ACCGACGGCATTGGGGC
1 ACCGACGACATTGGGGC
1835865 ACCGACGACATTGGGG
1 ACCGACGACATTGGGG
1835881 TTCCGGCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.27, G:0.39, T:0.12
Consensus pattern (17 bp):
ACCGACGACATTGGGGC
Found at i:1839834 original size:26 final size:26
Alignment explanation
Indices: 1839798--1839850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1839788 GTTGACTTAG
1839798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1839824 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1839850 G
1 G
1839851 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1840731 original size:26 final size:26
Alignment explanation
Indices: 1840695--1840747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1840685 GTTGACTTAG
1840695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1840721 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1840747 G
1 G
1840748 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1840957 original size:899 final size:894
Alignment explanation
Indices: 1838888--1841412 Score: 3328
Period size: 899 Copynumber: 2.8 Consensus size: 894
1838878 CCTTTCGTCT
* *
1838888 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
1838953 CG-GTCCAGACCGAGGGTTTCAGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 CGAAT-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCTGCATTTTT
** * **
1839017 CTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
129 CTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGT
* * * *
1839082 GAT-AGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATA
194 GATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
1839145 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
1839210 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTCTTCAAAC-AGTCACAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTC-AACTGGTCACAA
* * *
1839274 AATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGCATCA
387 AATCTTGTACACGTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCA
* * * * * * *
1839339 CATCTACCAAGTTCGGGGCTAAAACTCTTTCCAAAAAAATTTTAAAAAATTTTGAACCGTAAAAA
451 GA-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * * ** *
1839404 GTTTCAAAAAACATGAAAAATAA-AAAACGAGTCGTCTTGAAATGAAACTTCACGTGAAGGCTTT
515 GTTTCAAAAATCGT-AAAAAAAAGAAAACGAGTCGTCTTGCCAT-AAACTTCACGTGAAGGCTTA
* * *
1839468 AGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
578 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTG
* * * * *
1839533 CCTAAACCCACCTACCACCACCCTATCTATCAATGGCTTGCGCATCCCGTCTCTCTGGTCGACGT
643 CCTAAACCCACCT---ACCACCCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGTCGGCGT
** ** * *
1839598 AGTGCC-CCCGCCCCGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
705 AGTGCCTCCCG-CCCGCCCACTCATTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAATC
* ** * * * * * **
1839662 TAAGATCAGATTGGACAAAGGGTTGCGGTAGTAGGATCGGCAGCATGTAGAGGGGGACTCGGTCG
769 AAAGATCAGACCGGACAAAGGGTTGCGGCAGCAGGATCGGCAGCAAGTAAAGGGGGACCCGACCG
* * ** * * *
1839727 ATCACCAGCTTGCGCTTCCCGCCCCTTTGGCCGGTTGAGTGCCCACACGCTTGTTTCGTGG
834 ATCACCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGATTATTTCGTGG
** *
1839788 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCTAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * * *
1839853 C-AGACCAGACAGAGGGTTGCGGCAGCACATGCTGCGCTCAGGCATGTGCTGGTG-TCGTATTTC
66 CGA-ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCT-GCATTTT
* * * * * *
1839916 TCTTTGTCAGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCAGCA-TGGGGTTCCAG
128 TCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
* * * *
1839980 TGATCGGGGGGGCCGGGGGGGTGTGCCCAAATGATGTGTGATGGGTGCTGGTACTTGGTCCTTAT
193 TGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
1840045 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
1840110 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTACAATGGGGACACTTTTTTCAACTGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AATGGGGACACTTTTTTCAACTGGTCACAA
*
1840175 AATCTTGTACAC-TCGAGTTTTTTGCTAAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCAT
387 AATCTTGTACACGTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCA-
* * * *
1840239 GACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTATAAAAAATCCCGAACCGCAAAAAG
451 GACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
** * *
1840304 TTTTGAAAATCGTAAAAAAAAGAAAATGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAAG
516 TTTCAAAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGCCAT-AAACTTCACGTGAAGGCTTAAG
* *
1840369 GGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCC
580 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCC
* *
1840434 TAAACCCACCTACCACCCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGCCGGCATAGTGC
645 TAAACCCACCTACCACCCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGTCGGCGTAGTGC
* *
1840499 CTACCCGCCCGCCCACTCGTTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGA
710 CT-CCCGCCCGCCCACTCATTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAATCAAAGA
** *
1840564 TCAGACCGGACCTAGGGTTGCGGCAGCAGGA-CTGGTAGCACAG-AAAGGGGGACCCGACCGATC
774 TCAGACCGGACAAAGGGTTGCGGCAGCAGGATC-GGCAGCA-AGTAAAGGGGGACCCGACCGATC
* * * *
1840627 CCCGGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC-ATTCATTTCGTGG
837 ACCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGATT-ATTTCGTGG
1840685 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
*
1840750 CGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGATCGTGCATGTGCTGGTGCTGCATTTTTC
66 CGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCTGCATTTTTC
* * *
1840815 TTCGTCGGGGCACCATCTTCGGAGCATCGTCGGAGAACCTGACCGGGGGTATTGGGGTTCCGGTG
130 TTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTG
*
1840880 ATCGGGGGGGCCGGTGGGGGTGTGCACACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATA
195 ATCGGGGGGGCCGG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
1840945 TTGGCCCCCTATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
1841010 CAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGTCACTTTTTTTAAATGATCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTCAACTGGTCACAAA
* * *
1841075 ATCTTGTACACTTTGTGTTTTTTGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
388 ATCTTGTACACGTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCA-
* *
1841139 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAAG
451 GACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* ** * *
1841204 TTTCAAAAATCGTGAAAAATTGAAAACGAGTCGTCTTGCCATGAACTTCACGT-CA-GCTTACA-
516 TTTCAAAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGCCATAAACTTCACGTGAAGGCTTA-AG
* *
1841266 GGACCATTGTATGAATTTGCAAAGCCAT-AAAATGGCATTGGCGCGC-AAAATATGAAGATGTGC
580 GGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGC
* * * *** *
1841329 CT-AACACTACC-ACCAGCCTTATCGATCCACGGCTTGCTTTATCCCGTCTCTCTAGTCGGCGTA
644 CTAAAC-CCACCTACCA-CCCTATCGATCCATGGCTT-CCACATCCCGTCTCTCTGGTCGGCGTA
1841392 GTGCCTCCGCCGCCCGCCCAC
706 GTGCCT-C-CCGCCCGCCCAC
1841413 CCGCCCCGCC
Statistics
Matches: 1422, Mismatches: 175, Indels: 58
0.86 0.11 0.04
Matches are distributed among these distances:
895 7 0.00
896 91 0.06
897 367 0.26
898 61 0.04
899 399 0.28
900 321 0.23
901 176 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
CGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCTGCATTTTTCT
TCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGA
TCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAACTGGTCACAAAATC
TTGTACACGTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCAGACTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
AAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGCCATAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCATGGCTTCCACATCCCGTCTCTCTGGTCGGCGTAGTGCCTCCCG
CCCGCCCACTCATTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGACC
GGACAAAGGGTTGCGGCAGCAGGATCGGCAGCAAGTAAAGGGGGACCCGACCGATCACCAGCTTG
CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGATTATTTCGTGG
Found at i:1844068 original size:862 final size:855
Alignment explanation
Indices: 1841624--1844685 Score: 3499
Period size: 862 Copynumber: 3.5 Consensus size: 855
1841614 GGTTCGGGAT
* *
1841624 CGATC-GGGGG-CGGGAGTGGTGTGCACACATGATGTGC-ATGGGTGCTGGTA-TTGGC-C-TAT
1 CGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTAT
1841683 A-TGG--CCCTAAT-CCTCATC-AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
65 ATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
1841743 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAATTGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACA
* **
1841808 AAATCTTGTATACTTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
193 AAATCTTGTACAC-TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* *
1841873 CACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAAAAGTGAA
257 CACGTCTACCAAGTTTGGGGCC-AAAA--C-TC---------CTT------T-CC-------GAA
*
1841938 AAGTTTCGAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
295 AAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
1842003 AAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGT
360 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGT
* ** * * **
1842068 GCCTAAACCCACCTATCACTTTATCGATTCACGGCTTGCACATCCCGTCTCTCTGGCCGGTATAG
425 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
1842133 TGCCCGCCCGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
490 TGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * **
1842198 AGATCAGACAGGATCGAGGGTTGCGGCAGCAGGATCGGCAGGAAGCAGGGGGGGACCCGACCGAT
555 AGATTAGACTGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCA-AAGGGG----GA-C--T
* * *
1842263 CCTTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
612 -C--GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
1842328 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATT---G-G---------ATC----A--GACC-A
674 TTAGGCATACGGAGTTCATTCCCAGTCTAA-ATTACGGAGTTCATTCCAATCTAAGATGGACCGA
* ** *
1842373 ---AGGGTTGCGGCAGCACATGCTGGGCTC-AGGAATGTGCTGGTGCCGTATTTTTCTTCCTCGG
738 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCATCGG
* *
1842434 GGCACCATCACCGGAGCATCATCGGACAACCTGACCGGCGGCATTGGGGTTCCGG
802 GGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC-G
*
1842489 CGAT--------C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCG-ACCTTAT
1 CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCA-CTTAT
* *
1842544 ATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
1842609 ACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAA
*
1842674 AATCTTGTACACTTCAAGTTTTTAGCTGTATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
194 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
1842739 TGTCTACCATGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
259 CGTCTACCAAGTTTGGGGCCAAAA---C-TCC----------T------T-T----CCG--AAAA
* * ** *
1842804 GTTTGGAAAATCGTGAAAAATAGAAAATGAGTAATCTTGCCATTAAACTTCACGTGAAGGCTTAA
297 GTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
1842869 GGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
362 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGC
*
1842934 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G
427 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
1842997 --TGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCGTACGGAGTTCATTCTCGGTCTAAG
492 CCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
1843060 ATTAGACTGGACCAAGGGTTGTGACAGCAGGATCGGTAGCACGCAAAGGGGGACCCGGCTTGCGC
557 ATTAGACTGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACTCGGCTTGCGC
* * * * *
1843125 ATCTCACCCCTCTGGCAGGCTGAGCGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
622 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* *
1843190 ATTCACTCCCAGTCTAAATGTACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTG
687 GTTCATTCCCAGTCTAAAT-TACGGAGTTCATT-CCAATCTAAGA-TGGACC-GACCGAGGGTTG
* * *
1843255 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGGCACATTTTTCTTCGTCGAGGCACCATCAC
748 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCAC
* * * *
1843320 CGGAGAATCACCGGAGAACCTGGCCGACGGCATTCGGGTTCCAG
813 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC-G
1843364 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTAT
1 CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTAT
* * *
1843429 ATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCATTAAAGTGCATTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
1843494 ACAGGTTTGCTGCCAGTGGCCTTTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACACTTTTTTCAAATGGTCACAA
* * *
1843559 AATCTTGTACACTTCTAGTTTTTCGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
194 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
*
1843624 CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAGTTTTGAAAATCATGAAAAATAGAAAA
259 CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* * * *
1843689 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATCAATTTACAAGACA
324 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * * *
1843754 TAAAAAAGGCATTGGCACGTAGAAATCTGAAGTTGAGACTAAACCCACCTACCACCCTATCGATC
389 TAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
1843819 CACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCTGCCCGCCTGCCCGCTCGTTTCATC
454 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATC
*
1843884 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCAAGGGTTGCGACAG
519 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCAAGGGTTGCGACAG
*
1843949 CAGGATCGGCAGCACGTAAAGGGGGACTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
584 CAGGATCGGCAGCACGCAAAGGGGGACTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
1844014 CCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAAGCA-TACGGA
649 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA--ATTACGGA
* * * *
1844078 GTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
712 GTTCATTCC-AATCTAAGAT-GGA-CCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* ** *
1844143 GTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
774 GTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCG
1844208 GCGGCATTGGGGTTCCG
839 GCGGCATTGGGGTTCCG
* * *
1844225 ACGATCGGGGGTGCCGGGGGGGGTGTGCCCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTT
1 -CGATCGGGGG-GCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTT
1844290 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
63 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
1844355 TTACACGTGTGCTGCTAGTAGCCATTAAAGTGTCTGAAATAGGGTCACTTTTTTCAAATGGTCAC
128 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCAC
* * * * *
1844420 AAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTTGTGCATGCCAACAAAAATACATGGAT
192 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* *
1844485 CACGTCTACTAGGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGCAAA
257 CACGTCTACCAAGTTTGGGGCCAAAA---C-TCC---------TT------TC-----C-G-AAA
* * * * *
1844550 GAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTT
296 -AGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
1844615 AAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATAT
360 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATATGAAGATGT
1844679 GCCTAAA
425 GCCTAAA
1844686 TCTAAGATCG
Statistics
Matches: 1896, Mismatches: 189, Indels: 200
0.83 0.08 0.09
Matches are distributed among these distances:
848 2 0.00
849 82 0.04
851 1 0.00
852 1 0.00
853 1 0.00
854 1 0.00
855 2 0.00
857 20 0.01
858 192 0.10
859 8 0.00
860 98 0.05
861 13 0.01
862 332 0.18
863 256 0.14
864 264 0.14
865 118 0.06
866 2 0.00
867 4 0.00
869 2 0.00
870 4 0.00
871 2 0.00
872 1 0.00
875 105 0.06
876 3 0.00
881 3 0.00
882 3 0.00
884 3 0.00
885 248 0.13
886 1 0.00
887 1 0.00
888 1 0.00
889 59 0.03
890 63 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (855 bp):
CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAGTTTCGAAAATCATGAAAAATAGAAAATG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCAAGGGTTGCGACAGCA
GGATCGGCAGCACGCAAAGGGGGACTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAATTACGGAGTTC
ATTCCAATCTAAGATGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGG
TGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCG
Found at i:1844072 original size:26 final size:26
Alignment explanation
Indices: 1844043--1844095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1844033 GTTGACTTAG
*
1844043 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1844069 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1844095 G
1 G
1844096 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1845267 original size:874 final size:874
Alignment explanation
Indices: 1844069--1845651 Score: 2562
Period size: 874 Copynumber: 1.8 Consensus size: 874
1844059 CCTAGTCTAA
* * * * *
1844069 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACAGCAGCACATGCTGGG
* *
1844134 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** *
1844199 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGGGTGTGCCCACATGATGT
131 ACCTGACCGGCGGCATTGGGGCTCCGACGATCGAGGGCACCGGGGGGGGTGTGCACACATGATGT
** * *
1844264 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 AAGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
1844329 CACCCCCTTAAAGAGCATTTGAGATTTTACACGTGTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAAAGCATTTGAGATTTTACACGTGTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
*
1844394 TAGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
326 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
* * * *
1844459 GTGCATGCCAACAAAAATACATGGATCACGTCTACTAGGTTTGGGGCCAAAACGCCTTCCGAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-ATTTGGGACCAAAACGCCTTCCGAAAA
** * * *
1844524 AATTTTAAAAAATCTTGAACTGCAAAGAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1844589 TGCCATGAAACTTCACGTGAAGGGTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1844653 ATTGGCATGCAGAAATATGAAGATATGCCTAAATCTAAGATCGGACCAGATCGAGGGTTGTGGCA
585 ATTGGCATGCAGAAATATGAAAATATGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGGCA
*
1844718 GTAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTG-ACAACCCGCCTCTCTAG
650 GCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACAACCCGCCTCTCTAG
1844782 CCGACGTAGTGCCCGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
715 CCGACGTAGTGCCCGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
1844847 GTCTAAGATCAAACTGAACTGAAGGTTGCGATAGTAGGATCGATAGCACGCAGAGGGGGACCCGA
780 GTCTAAGATCAAACTGAACTGAAGGTTGCGATAGTAGGATCGATAGCACGCAGAGGGGGACCCGA
1844912 CCGATCCCCGGCTTGCATGGGTTGACTTAG
845 CCGATCCCCGGCTTGCATGGGTTGACTTAG
* * **
1844942 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAAGGTTACAGCAGCTTATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACAGCAGCACATGCTGGG
* * *
1845007 CTGGGGCAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCGTCGCCGGAGA
66 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
1845072 ACCTGACCGGTGGTATTGGGGCTCCGATGATCGATGGCACCGGGGGGGGTTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGGCTCCGACGATCGAGGGCACCGGGGGGGG-TGTGCACACATGATG
* * *
1845137 TAAGATGGGTAG-TGGTACTTGGCTATTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGCACT
195 TAAGATGGGT-GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
1845201 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTGTCTG
259 CACACCCCCTTAAAAAGCATTTGAGATTTTACACGTGTGCTGCT-AGTAGCCATTAAAGTGTCTG
* * *
1845265 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTT
* * *
1845330 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTGGGACCAAAACTCGTTCTGAA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTGGGACCAAAACGCCTTCCGAA
* *
1845395 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1845460 CTTGCCATTAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1845525 GCATTGGCATGTAGAAATATGAAAATGTGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGG
583 GCATTGGCATGCAGAAATATGAAAATATGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGG
*
1845590 CAGCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCTC
648 CAGCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACAACCCGCCTC
1845652 CACGCTCATT
Statistics
Matches: 645, Mismatches: 60, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
873 266 0.41
874 367 0.57
875 12 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACAGCAGCACATGCTGGG
CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGCTCCGACGATCGAGGGCACCGGGGGGGGTGTGCACACATGATGT
AAGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAAAGCATTTGAGATTTTACACGTGTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATGTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTGGGACCAAAACGCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAAATATGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAG
CAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACAACCCGCCTCTCTAGC
CGACGTAGTGCCCGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACTGAACTGAAGGTTGCGATAGTAGGATCGATAGCACGCAGAGGGGGACCCGAC
CGATCCCCGGCTTGCATGGGTTGACTTAG
Found at i:1845714 original size:26 final size:26
Alignment explanation
Indices: 1845678--1845730 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1845668 GTTGACTTAG
1845678 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1845704 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1845730 G
1 G
1845731 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1846040 original size:760 final size:762
Alignment explanation
Indices: 1844942--1846319 Score: 2163
Period size: 760 Copynumber: 1.8 Consensus size: 762
1844932 GTTGACTTAG
* * **
1844942 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAAGGTTACAGCAGCTTATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAAGGTTACAGCAGCACATGCTGGG
* * * *
1845007 CTGGGGCAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCGTCGCCGGAGA
66 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAGGAGA
** * * * *
1845072 ACCTGACCGGTGGTATTGGGGCTCCGATGATCGATGGCACCGGGGGGGGTTGTGCACACATGATG
131 ACCTGACCGACGGCATTGGGACTCCGATGATCGAGGGCACCGGGGGGAGTTGTGCACACATGATG
** * * * *
1845137 TAAGATGGGTAGTGGTACTTGGCTATTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGCACTC
196 TAAGATGGGTACAGGTACTTGGCCATTATATCGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
1845202 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
261 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1845267 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTT-GCTGAATTTTTT
* * * ** * *
1845332 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTT-GGGACCAAAACTCGTTCTGAA
390 TGTCCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTGGGGA-CAAAACTCCTTCCGAA
**
1845395 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
1845460 CTTGCCATTAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATG
*
1845525 GCATTGGCATGTAGAAATATGAAAATGTGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGG
584 GCATTGGCATGCAGAAATATGAAAATGTGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGG
1845590 CAGCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCTCCAC
649 CAGCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCTCCAC
1845655 GCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
714 GCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1845704 GCATATGGAGTTCATTCCCAGTCTAAGATCCGACCAGA-CCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAA-GGTTACAGCAGCACATGCTGG
*
1845768 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAGGAG
65 GCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAGGAG
* ** * ** *
1845833 AACCTGACCGACGGCATTGGGATTTTGATGATCGGGGGGGCC-GGGGGAG-TGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGACTCCGATGATCGAGGGCACCGGGGGGAGTTGTGCACACATGAT
** * *
1845896 GTGCGATGGGTACAGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACT
195 GTAAGATGGGTACAGGTACTTGGCCATTATATCGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
1845961 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
260 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1846026 AATGGGGGCACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAATTTTTGCTGAATTTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGCTGAATTTTTT
*
1846091 TGTCCATGCCAAAAAAAATGCAAGGATCACATCTAAAAAGTTTGGGGACAAAACTCCTTCCGAAA
390 TGTCCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTGGGGACAAAACTCCTTCCGAAA
* *
1846156 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
1846221 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGG
*
1846286 CATTGGCATGCAGAAATATGAAGATGTGCCTAAA
585 CATTGGCATGCAGAAATATGAAAATGTGCCTAAA
1846320 CCCACCTACC
Statistics
Matches: 554, Mismatches: 59, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
759 45 0.08
760 353 0.64
761 13 0.02
762 143 0.26
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (762 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAAGGTTACAGCAGCACATGCTGGG
CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAGGAGA
ACCTGACCGACGGCATTGGGACTCCGATGATCGAGGGCACCGGGGGGAGTTGTGCACACATGATG
TAAGATGGGTACAGGTACTTGGCCATTATATCGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGCTGAATTTTTTT
GTCCATGCCAAAAAAAATACAAGGATCACATCTAAAAAGTTTGGGGACAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGC
ATTGGCATGCAGAAATATGAAAATGTGCCTAAATCTAAGATCGGACCAGACCGAGGGTTGTGGCA
GCAGGATCTGCAACATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCTCCACGC
TCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1846605 original size:26 final size:26
Alignment explanation
Indices: 1846567--1846619 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1846557 GTGGATGTAG
*
1846567 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
1846593 GCATATGGAGTTCTTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1846619 G
1 G
1846620 ATGGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1847494 original size:26 final size:26
Alignment explanation
Indices: 1847464--1847516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1847454 GTTGACTTAG
*
1847464 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1847490 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1847516 G
1 G
1847517 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1848402 original size:26 final size:26
Alignment explanation
Indices: 1848366--1848418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1848356 GTTGACTTAG
*
1848366 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
1848392 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
1848418 G
1 G
1848419 AGTGTACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:1849264 original size:26 final size:26
Alignment explanation
Indices: 1849234--1849286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1849224 GTTGACTTAG
*
1849234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1849260 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1849286 G
1 G
1849287 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:1851026 original size:26 final size:26
Alignment explanation
Indices: 1850997--1851049 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1850987 GCTGACTTAG
*
1850997 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1851023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1851049 G
1 G
1851050 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1852799 original size:26 final size:26
Alignment explanation
Indices: 1852763--1852815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1852753 GTTGACTTAG
1852763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1852789 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1852815 G
1 G
1852816 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1853695 original size:26 final size:26
Alignment explanation
Indices: 1853666--1853718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1853656 GTTGACTTAG
1853666 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1853692 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1853718 G
1 G
1853719 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1853833 original size:903 final size:894
Alignment explanation
Indices: 1845652--1854918 Score: 11155
Period size: 865 Copynumber: 10.5 Consensus size: 894
1845642 ATCCCGCCTC
* *
1845652 CACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* *
1845717 ATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
66 ATTCCCAGTCTAAGAT-CGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** *
1845782 TGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CAGGAGAACCTGACCGACG
130 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCG
** * * * *
1845846 GCATT-GGGATTTTGATGATCGGGGGGGCCGGGGGAGTGTGCGCACATGATGTGCGATGGGTACA
194 GCATTAGGG-TTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1845910 GGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
257 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAA
*
1845975 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTT
321 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
1846040 TTTCAAATGGTCAGAAAATCTTGTACACTTCGAATTTTT-GCTGAATTTTTTTGTCCATGCCAAA
386 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* ** ** * *
1846104 AAAAATGCAAGGATCACATCTAAAAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAA
451 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAAAAAA
* ** * *
1846169 TCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
515 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
** *
1846234 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCAG
580 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
1846299 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCGCGGCTTGTGCATCCTGTCTC
645 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
1846364 TCTGGCTGGCGTAGT--------GCCCGTCCACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
710 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
* * * * * *
1846421 TCATTCCCTGT-TAAGATCAG-CTGGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACGTTGAGG
775 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAGAGG
* * *
1846484 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
839 GGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* * *
1846541 CACGCTCATTTCGTGGGTGGA-TGTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTT
1 CACGCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
* * * * * ** * *
1846605 CTTTCCCAGTGTAAGATGGGA-CTGGACAGAGGGTTGCAACAGCACATGTTGGGCTCGGGCATAT
65 CATTCCCAGTCTAAGAT-CGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* ** * * *
1846669 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTACCGGAGCATCGTCGAAGAACCTGACCAGT
128 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGC
* * * * * *
1846734 GACATTGGGGTTCCGACGATTGGGGGAGCC-GGGGGGTGTGCACATATGATGTGTGATGGGTGCT
193 GGCATTAGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1846798 GGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGCAACTCACACCCCCTTAAA
257 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAG-AACTCACACCCCCTTAAA
* *
1846863 GAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
321 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1846928 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
386 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* **
1846993 AAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTTCG-AAAAATTTTAAAAAA
451 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAA
* * *
1847057 TCTCGAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
515 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1847122 TCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATTGCATTGGCATGCA-
580 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* ** *
1847186 AAAAATTGAAGATGTGCCTAAACCCACCTACCACTGTATCGATCCGCGGCTTGCGCATCCCGTCT
645 AAATA-TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * * * ** *
1847251 CTCTAGCCGACGTAGTGCCCGCCCGTCTGCGCGCCCGTTTCATCGGTTAGCTCGGGCATATGTAG
709 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAG
* ** * ** * * * *
1847316 TT-ATTCCTAGTCTAAGATTGGATCGGATAGAGGGTTGCGGTAGCAGGATCTGTAGCATGGAAAG
774 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAGAG
* ** * * *
1847380 AGGGACCCGGGCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
838 GGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* * **
1847438 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * * * *
1847503 ATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGC-TGGTG
66 ATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTG
* * * *
1847567 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACA
129 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCG
* *
1847632 CCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
194 GCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * *
1847696 GTAGTTGGCCCTTATATTGGCCCCTTATTCCTCATCAAACTTGGAGAACTCACACCCCTTTAAAG
258 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAGAACTCACACCCCCTTAAAG
* * *
1847761 AGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACCTTT
322 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
1847826 TTCAAATGGTCACTAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
387 TTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** * ** *
1847891 AAAATGCAAGGATAACATCTACCGAGTTTGATGCCAAAACTCCTTTCGAAAAATTTTTAAAAAAT
452 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAAT
* * ** *
1847956 CTCAAACTGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
516 CCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
1848021 CACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGA
581 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
1848086 AATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
646 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
1848151 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGA
711 CTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
* * * * * *
1848216 AGTTCATTCCCAGTCTAAGATCATACCGGACTGAGGGTTGCGGCAACAAGATC-GACAGCATGTT
772 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAG-TAGCATGTA
* * * *
1848280 GAGGGGGACCCCG-TTGA-CCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAACGCCCG
835 GAGGGGGA-CCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* * * *
1848340 CACGCCCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * * *
1848405 ATTCCCAGTATAAGAGT-G-TACCGAACCGAGGGTTGCGACAGCACATGCTTGGCTCGGGCATGT
66 ATTCCCAGTCTAAGA-TCGAT-CAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* ** * * * * *
1848468 ACTGGTGCCGTATTTTTCTTCG-CTGAGGCACCATCGTCGGAGCATCATCGGAGAAACTGACCGA
128 GCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * *
1848532 CGGCATTGGGGTTCCAACGATCAGGGGGGCC-GGGGGG-GTGCACACATGATGTGCGATGGGTGC
192 CGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1848595 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAA
256 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAA
* *
1848660 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAAG-GTCTAAAATGGGGACACT
320 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACT
* *
1848724 TTTTTCAAATGGTCACAAAATCTTGTACACTTCA-AGTTTTTACCTG-ATTCTTTTGTGCATGCC
384 TTTTTCAAATGGTCACAAAATCTTGTACACTT-AGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
1848787 AACAAAAATACAAGGATCATG--T--C-----T---------A---C------AAAATTTTAAAA
448 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTTTAAAA
* * *
1848825 AATCCCAAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAA
513 AATCCCGAACCAC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
1848889 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATG
577 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
1848954 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGT
642 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * * * *
1849019 CTCTCTGGCCGGCATAGTGCCCGCCCACCCACGCGCTCGTTTCATCGATTAGCTCAGGCATATGT
707 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
* * * * * * *
1849084 AGTT-ATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGCAGTAGCAGGATCTGTAGCATGCAA
772 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAG
* * * * ** * *
1849148 AAGGGGACCCGACCGATCCCCGGTTTGCGTTTCCCACCCCTTTGGCCGGCTGAGCGCCCG
836 AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* * ***
1849208 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * * *
1849273 ATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATGCTGGGCACGGGC-TAGTG
66 ATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTG
** * * * * * **
1849337 CTGGTGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCATCGGAGAACGTAACCGATG
129 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * *
1849402 CCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-GTGCGTACATGATGTGCGATGGGTGCTG
194 GCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
1849466 GTACTTGGCCCGTATATTGGGCCCCTATTCCTCATCAAACTTGGAGAACTCACACCCCCTTAAAG
258 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAGAACTCACACCCCCTTAAAG
* * *
1849531 TGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTT
322 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
1849596 TTCAAATGGTCACTAAATCATGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
387 TTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** *
1849661 AAAATGCAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
452 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAAAAAAT
* * * * *
1849726 CTCAAACTACAAAATGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTT
516 CCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
1849791 CACATGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGA
581 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
** * * *
1849856 AATATGAAGATGTGAATAAACCAACCAACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
646 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** * * *
1849921 CTGACCGGCGTAGTGCCCGCCCACCTTCCCGTCCGCTCGTTTAATTGGTTGGCTTAGGCATACGA
711 CTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
* * * * *
1849986 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGTTG
772 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAG
* ** * * *
1850051 AGGGGGACCTGATTAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCG
836 AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* *
1850111 CACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T----ATA---AG---
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* *
1850164 ATT----G--T---A-C---CGGACCGAGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCT
66 ATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
1850216 GGTGCCGCATTTTTCTTCGTCGAGGCACCAT---C---G--TCGT---AGAAACTGACCGACGGC
131 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * *
1850270 GTTGGGGTTCCGGCGATCGGCGGGGTC-GGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGT
196 ATTAGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
1850333 ACTTGGCCTTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
260 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAAGAG
** *
1850398 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTTGGACACTCTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
1850463 CAAATAGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
1850528 AATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAATCTCCTTCTGAAAATATTTTAAAAAATCC
454 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAAAAAATCC
* * * * *
1850593 AGAACCACAAAAAGTTTCACAAATCGTGAAAAATAGACAACAAGTCGTCTTGCCATGAAACTTTA
518 CGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* ** * *
1850658 CGTGAAGGCTTAACGGATAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACACAAA
583 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
1850723 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
648 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** *
1850788 GGCTGGCGTAGTGCCCGCCCGCATGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCA
713 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCA
* * * * * * *
1850853 TTCCCAGTCTAAGATCAGACCAGATCAAGGGTTACGACAGCAGGATCGGCAGCATGTACAGGGGG
778 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCAGTAGCATGTAGAGGGGG
** * * *
1850918 ACCCGA-CTGATCCC-CACTTGCGCATCTCACCCCTCTGGCCGGCTGACCGTCCG
842 ACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
* * * *
1850971 CACGCTCGTTCCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * *
1851036 ATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGT
66 ATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
*
1851101 TGGTGCCACATTTTTCTTCGTCGAGGCACCAT--------CA-C--CGGAGAACCTGACCGGCGG
130 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG
* *
1851155 CATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGTTGTGCGATGGGTGCTGGT
195 CATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
1851220 ACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
260 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAGAG
* *
1851285 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGTAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
1851350 CAAATGGTTACAAAATCTTGTACACTTCA-AGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAA
389 CAAATGGTCACAAAATCTTGTACACTT-AGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
1851414 AAATACAAGGATCATGGCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATC
453 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATC
* * * *
1851479 CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTC
517 CCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
1851544 ACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAA
582 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
1851609 ATATGAAGATGTGCCTAAGCCGACCT-CTCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCT
647 ATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
1851673 CTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
711 CTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGG
* * * * * *
1851738 AGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTAGCGATAGTAGGATC-GATAGCATGCA
772 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCAG-TAGCATGTA
* * * * * * *
1851802 AAGGGGGACCCGGTCAATCCCTGGCTTGCGTATCCCGCTCCTTTGGCCAGCTGAGCGCCCG
835 GAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCG
** * * *
1851863 CACATTCATTTGGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * * * *
1851916 A-T--C-G-----GA-C--T-GGACCGAGGGTTACCGCAGCACATACTGGGCTCAGGCATGTG-T
66 ATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
1851967 CGGTGTCACATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCGG
131 -GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG
* * * *
1852032 CATTGGGGTTCCGACAATCGGCGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGG
195 CATTAGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
1852096 TTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
259 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAAAGA
* *
1852161 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
323 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
1852226 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAA-AA
388 TCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
1852290 AGAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAT
453 A-AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAAT
* * ** *
1852355 CCCGAACCGCAAAAGGTTTCAAAAATCAGAAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
516 CCCGAACCACAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * ** *
1852420 TCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATCAGCATGCAG
580 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*** *
1852485 AAATATGAAGATACACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTC
645 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*** *
1852550 TCTGGCCGGCGTAGTGCTTTCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGT
710 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
* * *
1852615 TCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGCTGCAGCAGGATCGGTAGCATGTAGAGG
775 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAGAGG
* * * * *
1852680 GGGACCCGA-CAAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGACCGAGCACACG
839 GGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CG
1852737 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
* * ** *
1852802 TTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCACATGCTGGACTCGGGCATGTGC
66 ATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** *
1852867 TGGTGCCGCATTTTTCTTCAACGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGGCGG
130 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG
* * * *
1852932 CATTAGGGTTTCGATGATCGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTAGT
195 CATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1852997 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCATGAACTCACACCCCCTTAAAGAG
260 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACACCCCCTTAAAGAG
* *
1853062 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
1853127 CAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTGGCTGAATTCTTTTGTGCATGCCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
1853192 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTTGAAAAAATTTTAAAAAATCT
454 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTTGAAAAAATTTTAAAAAATCC
* *
1853257 CGAACCACAAAAAGTTTCGAAAATCGT-AAAACATAGAAAACGAGTCGTCTTGCCATGAAATTTC
518 CGAACCACAAAAAGTTTCAAAAATCGTGAAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * **
1853321 ATGTGAAGGCTGAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATCTCATTGGCACGCAGAA
582 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * * * *
1853386 ATATGAAGATGTGCCTCAACCCAGCTACCAGCCTATCGACCCACAGCTTGCGCATCCCATCTCTC
647 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
1853451 TGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGTCATATAGA
712 TGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGA
* * * * *
1853516 GTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGATCAGCAGCACGTAGA
773 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCAGTAGCATGTAGA
* * * *
1853581 AGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGGGCGCCTG
837 GGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC-G
* * *
1853640 CATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
*
1853705 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGC
66 ATTCCCAGTCTAAGATC-GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** * * * * * *
1853770 TGGTGCCGTATTTTTCTCCGGCGGGCCACCATCGTCGGAGCGTCGTCGGAGAACCTAACCGGCGG
130 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGG
* * * *
1853835 TAATT-GGGTTCCGGCGATCGAGGGGGCCGGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCT
195 -CATTAGGGTTCCGACGATCG-GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1853899 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
257 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACACCCCCTTAAA
1853964 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
321 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
1854029 TTTCAAATGGTCTCAAAATCTTGTACACCTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAC
386 TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
1854094 AAAAATAC-AGTGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
451 AAAAATACAAG-GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTTTAAAAA
* ** * * * *
1854158 ATCCCTAA-C-CTTAAAGTTT-AAAAAGTCATGAAAAATAGAAAATGACTTGTCTTGCCATGAAA
514 ATCCCGAACCACAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
1854220 CTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
578 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* **
1854285 AGAAATA-GAAGATGTGCCTAAACCCACCTACCACCCTATTGATTGACGGCTTGCGCATCCCGTC
643 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
1854349 TCTCTGGCCGGTGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
708 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGA
* * * * *
1854410 GTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGTAGGATCAGTAGCACGTAGA
773 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-CGCAGCAGGATCAGTAGCATGTAGA
* ** * *
1854475 GGGGGACCCGGTCGATCACC-GATTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
837 GGGGGACCCGATCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCG
* * * *
1854534 CACG-TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG---ATCG-G---
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
*
1854591 A----C---C---G---GAT-----CGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCT
66 ATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
1854638 GGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCTTC-ACAGAAGAGCCTGACCGACGG
131 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGG
* * **
1854702 CATTAGGGTTTCGGCGATCGGGGGTTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
195 CATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
** *
1854767 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGTGAACTCACACCCCTTTAAAGAG
260 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAGAACTCACACCCCCTTAAAGAG
* * * *
1854832 CATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
1854897 CAAATGGTCACAAAATCTTGTA
389 CAAATGGTCACAAAATCTTGTA
1854919 GTGCCCGCCC
Statistics
Matches: 7293, Mismatches: 873, Indels: 448
0.85 0.10 0.05
Matches are distributed among these distances:
860 76 0.01
861 102 0.01
862 3 0.00
863 1 0.00
864 1 0.00
865 634 0.09
866 114 0.02
867 158 0.02
868 254 0.03
869 190 0.03
870 36 0.00
871 4 0.00
872 228 0.03
873 2 0.00
874 187 0.03
875 3 0.00
876 7 0.00
877 399 0.05
878 168 0.02
879 6 0.00
880 3 0.00
881 2 0.00
882 4 0.00
883 4 0.00
885 7 0.00
886 115 0.02
887 456 0.06
888 398 0.05
889 243 0.03
890 10 0.00
891 117 0.02
892 69 0.01
893 43 0.01
894 143 0.02
895 13 0.00
896 40 0.01
897 518 0.07
898 439 0.06
899 167 0.02
900 438 0.06
901 193 0.03
902 370 0.05
903 626 0.09
904 24 0.00
905 276 0.04
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
ATTCCCAGTCTAAGATCGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGC
ATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTTTAAAAAATCCCGA
ACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCAGTAGCATGTAGAGGGGGACCC
GATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCG
Found at i:1855160 original size:26 final size:26
Alignment explanation
Indices: 1855124--1855174 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1855114 TTGACTTAGG
1855124 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
1855150 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1855175 GATCGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1856063 original size:26 final size:26
Alignment explanation
Indices: 1856025--1856077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1856015 ATTGACTTAG
1856025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1856051 GCATACGGCGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1856077 G
1 G
1856078 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1856939 original size:26 final size:26
Alignment explanation
Indices: 1856909--1856961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1856899 GTTGACTTAG
*
1856909 GCATACGGAGTTCATTGCC-AGTCTAA
1 GCATACGAAGTTCATT-CCTAGTCTAA
1856935 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
1856961 G
1 G
1856962 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:1857313 original size:895 final size:891
Alignment explanation
Indices: 1854937--1863243 Score: 10161
Period size: 891 Copynumber: 9.4 Consensus size: 891
1854927 CCGTTTGCCT
* * * * * * *
1854937 GCCCGCTCGTTTCTTCGGTTGGGTTAGACATACGAAGTTGATTCCTAGTCTAAGATCAGACCGGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * ** *
1855002 CCGAGGGTT-ACGGTAACAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
66 CCGAGGGTTGA-GGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * * *
1855066 CATCCCGCCCCACTGGCCGACTGAGTGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
1855131 AGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * * *
1855196 ACGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCATCATCA
259 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCT
* * * * * * ** *
1855261 CAGGAGCATCGTCAGAGAACCTGACCGACGGCATTGAGGTTCTGGCGATAATGGGGGTCGGGGGG
324 C-CGA-CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGG
* * **
1855326 TGTGCGCGCATGATGTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCAATCATC
385 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
1855391 AAACCTGGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
450 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1855456 ATTAAAGTGTCTGAAATAGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
515 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
1855521 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCCA
580 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * ** * * *
1855586 AAACTCCATCTGAAAAAATTTTAAAAAATCCCGAACTGGGAAAAGTTTTAAAAATCGTTAAAAAT
645 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
*
1855651 AGAAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
710 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
1855716 AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
775 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
1855781 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCTGCCCGCCCGCTC
840 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTA--G--TGCCCG-CC-CTC
* * **
1855840 GCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * *
1855905 CCGGGGGTTGAGGTAGCAA-ATTGGCAGCACACAGAGGGGGATCC-GACTGATCCCCGGCTTACG
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCG
* * * * * *
1855968 CAGCCCGCCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTCCTGGATTGACTTAGGCATACGG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
1856033 AGTTCATTCCCAGTCTAAGCATACGGCGTTCATTTCCAGTCTAAGATCGGACTGGACTGAGGGTA
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGTT
* *
1856098 GCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA--T
259 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCT
* * * *
1856161 -CG----C-CAGAGAACCTGACCGACGGCATTGGGGTT-TGAACGATCGGGGGGCCGGGGGTCTG
324 CCGACATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-ACGATCGGGGGGCCGGGGG-GTG
*
1856219 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAA
387 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
1856284 ACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1856349 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
1856414 AGCTGAATTGTTTTGTGCTTGCCAACAAAAATACAAGGATCACGGCTACCATGTTTGGGGCCAAA
582 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
1856479 ACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAA
647 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
1856544 AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** * * *
1856609 GCCAAAAAAATGGCATTGGCACATAGAAATATGAAGGTGTGCCTAATCCCACCTACCAGCCTATC
777 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
1856674 TATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAATGCCCG-CCT-
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCTC
* * *
1856723 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATTGGATCGGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *** * * * * ** * * *
1856788 CAGACCATTGTGGCAACACGATCGGCAGCATGCAGAGGGGAACCCGG-CTGATCCACGGCTTCCG
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCG
* * * *
1856852 CATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
1856917 AGTTCATTGCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATCAATGGTT
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
1856982 GCGGCAGCACATGCTGGGCTCGGGCATGCGCTGGTGCCGCTTTTTTCTTCGCCGGGGCACCATCG
259 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-
*
1857047 TCCGATCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGG
323 TCCGA-CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG
*
1857112 TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
385 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
1857177 AAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCC
450 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
1857242 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTT
515 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
1857307 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTCTGTGGCCA
580 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
1857372 AAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
645 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
1857437 A-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGAACCATTGTATGAATTTAC
710 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
1857501 AAGCCATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
775 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
1857566 CCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCGCCCGCCCGCTC
840 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGT----GCCCG-CC-CTC
* * * * *
1857625 GCACGCTCGTTTCATTGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
** * * * * ** *
1857690 CCG-GGGTTGAGGTAGCAAGATTAGTAGTACACAGTGGGGGATCCGACCGATCCCCGACTTGCGC
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * * * * * * *
1857754 AGCCCACCCCTCTGGCCGGCTCAGCACCCGCACGCTCATTTCCTAGATTGGCTTAGGCATACGGA
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
1857819 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTAG
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* *
1857884 CGGCAGCACATGCTGGGCTCGGGCGTGTGCTGGTGCCACATTTTTCTTCGTCTGGGCACCAT-T-
260 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTC
* * * * **
1857947 -G-----TCGGAGAACCTGACCGTCGGCTTTGGGGTTTCGATGATCGGGGGGCCAGGGGTCTGTG
325 CGACATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTG
* * *
1858006 CGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAAC
389 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
1858071 CTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAGTT
454 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TT
1858135 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
1858200 GCTTAATTTTTTTTTGCACGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAA
583 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
1858265 CTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAG
648 CTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1858329 AAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
1858394 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAATCCCACCTACCACCCTATC
777 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1858459 GATCCACCGCTTGTGCATCCCGTCTCTCTGACCGACGTAGTGCCCACCCGTCCGCCCGTCC
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG------C--CCGCCC-T-C
* * * ** *
1858520 GCCCGCTCATTTCCTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAAACCAGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* ** **** * * * * *
1858585 CCGAGGGTTGTGCCAATGGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCTCAGCTTGTGC
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * * **
1858650 ATCCTGCCCCTTTGGCCGGCTGAGCGCACGCATGCTTTTTTCGTGGGTTGACTTAGGCAT----A
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
1858711 --T-A----GAGT-T-----T----A-TTC---CCAGTCAAAGATCGGACCAGACCGAGGGTTGC
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* *
1858755 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTT-TTTGTC-GGGCACCA--T-
261 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCTC
* * * * *
1858814 CG-----TCGGAGCATC-G-CCGG-AGCATTGGGGTTCCGACGATTGGGGGGCCGGTGGGTGTGC
325 CGACATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* * * *
1858871 GCAAATGATGGGCGATGGGTGCTGGAACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACC
390 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1858936 TCAAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
455 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
1859001 AGTGTCTAAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACAC-TCTGAGCTTTTAG
520 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAG
* * *
1859065 CTGAATTTTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAC
584 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
1859130 TCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAA
649 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
1859195 AATGAGTCATCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
714 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
1859260 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
779 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
1859325 TCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGT----G-CCT-
844 TCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCTC
* ** * **
1859368 GCCCGCTGGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGAAT-GGACTAG
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGG
* ** * **
1859432 ACCGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
65 ACCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* *
1859497 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
1859562 AGTTCATTCCCAG--T---C-TA---AG--------A---T----T-GGACCGGACCGAGGGTTA
195 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * ** *
1859602 CGGCATCACATGCTGGGCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAACATCGT
260 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-T
* * * ** * *
1859667 CGGAGCATCACCGGAGAACCTGATCGATGGTATTGGGGTTCCGACGATCAGGGGGGCCAAGGGGG
324 CCGA-CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG
* * *
1859732 TGTGCACACATGATGTGTGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
385 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
1859797 AAACCTCTAGAACTCAAACCGCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
450 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1859862 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTG-G---
515 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* **
1859923 ---G-TGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCA
580 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
1859984 AAACTCCATCCAAAAAAATTTTTAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
645 AAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* * * * * *
1860048 TAGAAAACGAGTCATCTTGCCATGAAACTTCTCGTGAAAGCTTAAGGAACCATTGTATGGATTTG
709 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
1860113 CAAGCCATCAAAATGGCATTGGGACACAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCT
774 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *** * *
1860178 ATCGATCCATGACTTGCACATCCCGCCTCTCTAGTTGGCATACTGCCCGTCGGCCCTCC
839 ATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGCGTAGTG-CC--C-GCCCT-C
* * * * * * * ** *
1860237 GTCAGGTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGATTGAA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * *
1860302 CCAAGGGTTGCGGCAGC---A--GGCAG-----AGA--GGGACCCGATCGATCCTCGACTTGCGT
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* *
1860355 ATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
131 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
1860420 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTTAGATCAGACCAGACCGAGGGTTAC
196 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
*** * * *
1860485 AATAGCACATGCTGGGCTTC-AGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCATCGTCG
261 GGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATC-
* * *** *
1860548 TCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGTAATCGGGGGGCCAGGGGGT
323 TCCGA-CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
1860613 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
386 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
1860678 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCA-TAGCCA
451 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
1860742 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTT
516 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
1860807 TAGCTGAATTTTTTTGTGCCTGCCAACAAAAATACAAGGATCACGTCTACCATGTCTGTGGCCAA
581 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
1860872 AACTCCTTTCGAAAAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA
646 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
1860936 -AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGAACCATTGTATGAATTTACA
711 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
**
1861000 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
776 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
1861065 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACTC
841 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGT----GCCCG-CC-CTC
* * *
1861123 GCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * **
1861188 CCG-GGGTTGAGGTAGCAAGATTGGCAGCACACAGAGGGGGATCCGACCGA-CCCCTGGCTTGCG
66 CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCC-GGCTTGCG
* * * * * *
1861251 C-TGCCCACCCCTCTGGCCGGCTCAGC-ACC-CACGCTCGTTTCCTGGATTGGCTTAGGCATACG
130 CAT-CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
1861313 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTATGATCGGACTGGACCGAGGGT
194 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
1861378 AGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCTGGGCACCA--
258 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
* * * * **
1861441 T-CG-----TCGGAGAACCTGACCGTCGACTTTGGGGTTTCGACGATCGGGGGGCCAGGGGTCTG
323 TCCGACATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTG
* *
1861500 TGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAA
387 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
1861565 ACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1861630 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTT
517 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * * * **
1861695 AGCTTAATTTTTTTTTACATGCCAATAAAAATACAAGGATCACGTCTACCAAGCTCGGGGTGAAA
582 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
1861760 ACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAG
647 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1861825 AAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAA
712 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
1861890 GCCAT-AAAATGCCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCATATC
777 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1861954 GATCCACGGCATGCACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGTCCACCC
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCC-T-----C
* * *
1862011 ACCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCGGA
1 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * ** * *
1862076 CTGAGGGTT-ACGGTAGTAAGATCGGTAGCACACAGAAAGGGACCCGATCGATCCCCGGCTTACG
66 CCGAGGGTTGA-GGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * *
1862140 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGACTT-GCGCATACG
130 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACG
* * * *
1862204 GAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
194 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGT
* * *
1862269 TGCGGTAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC
258 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
** * * * * *
1862334 GTTGGAGCATCGTAGGAGAACCTGACCGGCGACATTGGGGTTCCGGCAACCGGGGGGGCCGGGGG
323 -TCCGA-CATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
* * * *
1862399 GTGTGCGTACATGATGTGCGATGGGTGCCGGTAGTTGGCCCTTATATTGGCCCCGTATCCCTCAT
384 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
1862464 CAAACCTCCAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGC
449 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
1862529 CATTCAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
514 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
1862594 TTTAGCTGAATATTTTTTTTTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGG
579 TTTAGCTG-A-ATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGG
* * *
1862658 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCACGAA
641 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAA
*
1862723 AAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
706 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
1862788 TTACAAGCCATGAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCAC
771 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
1862853 CCTATCAATCCACGTCTTGCGCATCCTGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCCC
836 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG----CCCG-CC-CTC
* * * *
1862916 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATTGATCAGA
1 G--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA-AGATCGGA
* * * * * *
1862981 TCGGACCGAAGGTT-ATAGCAGCAAGATCGACAGCACACAGAGGGGGACCCGGTCGATCCTCGGC
61 CCGGACCGAGGGTTGA-GGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGC
* * * * * * **
1863045 TCGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCATGCTTGTTTCATGGGAGGACTTAGGCA
125 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
1863110 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGACCAGACCAGACCGA
190 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGA
* * * * **
1863175 GGGTTGCGGTAGCACATGCTGCGCTCGGGCATATGCTGGTGTCGTATTTTTCTTCGAT-GGGGCA
254 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCA
1863239 CCATC
318 CCATC
1863244 GTCAGAGAAC
Statistics
Matches: 6432, Mismatches: 763, Indels: 411
0.85 0.10 0.05
Matches are distributed among these distances:
848 216 0.03
849 9 0.00
850 8 0.00
851 2 0.00
852 2 0.00
853 1 0.00
854 2 0.00
855 1 0.00
856 1 0.00
857 97 0.02
858 263 0.04
859 9 0.00
860 1 0.00
861 7 0.00
862 2 0.00
863 6 0.00
864 480 0.07
865 37 0.01
866 183 0.03
867 6 0.00
868 19 0.00
869 72 0.01
870 67 0.01
874 4 0.00
875 1 0.00
877 1 0.00
879 64 0.01
880 123 0.02
881 10 0.00
882 106 0.02
883 77 0.01
884 207 0.03
885 205 0.03
886 224 0.03
887 215 0.03
888 203 0.03
889 137 0.02
890 380 0.06
891 786 0.12
892 2 0.00
893 5 0.00
894 163 0.03
895 481 0.07
896 175 0.03
897 39 0.01
898 6 0.00
899 1 0.00
900 1 0.00
901 205 0.03
902 485 0.08
903 86 0.01
904 174 0.03
905 89 0.01
907 1 0.00
908 2 0.00
909 48 0.01
910 232 0.04
911 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCTCC
GACATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCTC
Found at i:1857846 original size:26 final size:26
Alignment explanation
Indices: 1857810--1857862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1857800 ATTGGCTTAG
1857810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1857836 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1857862 G
1 G
1857863 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1860447 original size:26 final size:25
Alignment explanation
Indices: 1860411--1860459 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
1860401 GTTGACTTAG
1860411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
1860437 GCATACGGAGTTCATTCCAGTCT
1 GCATACGGAGTTCATTCCAGTCT
1860460 TAGATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:1861342 original size:26 final size:26
Alignment explanation
Indices: 1861306--1861356 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1861296 ATTGGCTTAG
1861306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1861332 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1861357 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1861593 original size:886 final size:892
Alignment explanation
Indices: 1859554--1863273 Score: 4612
Period size: 886 Copynumber: 4.2 Consensus size: 892
1859544 GTTGACTTAG
** * *
1859554 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTA-CGGCATCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TAGCGGTAGCACATGCTGG
* * * *
1859618 GCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAACATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--TG
* * * *
1859683 AACCTGATCGATGGTATTGGGGTTCCGACGATCAGGGGGGCCAAGGGGGTGTGCACACATGATGT
125 -ACC-G-GCGA--GCATTGGGGTTCCGACAATCAGGGGGGCC-AGGGGGTGTGCGCACATGATGT
* * *
1859748 GTGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
1859813 AACCGCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1859878 TGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTG-G------G-TGAATTATTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
1859935 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCATCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCCAAAAA
* *
1860000 AATTTTTAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
444 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
1860064 TTGCCATGAAACTTCTCGTGAAAGCTTAAGGAACCATTGTATGGATTTGCAAGCCATCAAAATGG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCAT-AAAATGG
* * * * *
1860129 CATTGGGACACAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGACTTG
572 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * * * * * *
1860194 CACATCCCGCCTCTCTAGTTGGCATACTGCCCGTCGGCCC-TCCGTCA-GGTCATTTCGTCGATT
637 CACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCG-CACGCTCGTTTCATCGATT
* * ** * * *
1860257 GGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGATTGAACCAAGGGTTGCGGCAGC---
701 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAG
* * * * * *
1860319 A--GGCAG-----AGA--GGGACCCGATCGATCCTCGACTTGCGTATCCCGCCCCTTTGGCCGAC
766 ATCGGCAGCACACAGAGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * *
1860375 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 TGAGCGACCGCACGCTCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
1860437 GCATACGGAGTTCATT-CCAGTCTTAGATCAGACCAGACCGAGGGTTA-CAATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TAGCGGTAGCACATGCTGG
* *
1860500 GCTTC-AGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCATCGTCGTCGGAGCATCGTCGG
65 GC-TCGGGCATGTGCTGGTGCCATATTTTTCTTCGTC-GGGGCA-------C----CATCGTCGG
**
1860563 AGAACCTGACCGGC-AGCATTGGGGTTCCGGTAATC-GGGGGGCCAGGGGGTGTGCGCACATGAT
117 AGAACCTGACCGGCGAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGAT
*
1860626 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
182 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
1860691 CACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGA
247 CAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1860755 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
1860820 TTGTGCCTGCCAACAAAAATACAAGGATCACGTCTACCATGTCTGTGGCCAAAACTCCTTTCGAA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCCAAA
*
1860885 AAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA-AAAACGAGTCGT
442 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1860948 CTTGCCATGAAACTTCACGTGAAGGCTTATGGAACCATTGTATGAATTTACAAGCCATAAAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCAT-AAAATG
*
1861013 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
571 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1861078 GCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCACTCGCACGCTCGTTTCATCGGT
636 GCACATCCCGTCTCTCTAGCCGA-CGTAGTGCCCGCCCGCCCACCCGCACGCTCGTTTCATCGAT
* *
1861142 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-GGGTTGA-GGTAGCA
700 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-ACGGCAGCA
* * *
1861205 AGATTGGCAGCACACAGAGGGGGATCCGACCGACCC-CTGGCTTGCGC-TGCCCACCCCTCTGGC
764 AGATCGGCAGCACACAGAGGGGGACCCGATCGACCCTC-GGCTTGCGCAT-CCCACCCCTCTGGC
* *
1861268 CGGCTCAGC-ACC-CACGCTCGTTTCCTGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
827 CGGCTGAGCGACCGCACGCTCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1861331 A
892 A
* * * * *
1861332 GCATACGGAGTTCATTTCCAGTCTATGATCGGACTGGACCGAGGGTAGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
* * *
1861397 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCTGGGCACCATCGTCGGAGAACCTGACCGTC
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
1861462 GA-CTTTGGGGTTTCGACGATC-GGGGGGCCAGGGGTCTGTGCGCACATGATGTGCGATGGGTGC
131 GAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
* *
1861525 TGGCACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAA
*
1861590 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
1861655 TTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTTAATTTTTTTTTACATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
1861720 TAAAAATACAAGGATCACGTCTACCAAG-CTCGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTCT-GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * *
1861784 AATCTCAAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAA
454 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
1861849 CTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAATGCCATTGGCACGTA
519 CTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACACA
* * *
1861914 GAAATATGAGGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCATGCACATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
* * *
1861979 CTCTAGCCGACGTAGTGCCCGCCCGTCCACCCACCCGCTCGTTTCATCGATTGGCTTAGGCATAC
649 CTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCACGCTCGTTTCATCGATTGGCTTAGGCATAC
* * * * * *
1862044 GGAGTTAATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGTAAGATCGGTAGCACAC
714 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCACAC
** * * * *
1862109 AGAAAGGGACCCGATCGATCCC-CGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCA
779 AGAGGGGGACCCGATCGA-CCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGACCGCA
* *
1862173 CGCTCG-TTCCATGGGTTGACTT-GCGCATACGGAGTTCATTCTCAGTCTAA
843 CGCTCGTTTCC-TGGATTGACTTAG-GCATACGGAGTTCATTCCCAGTCTAA
* * *
1862223 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
*
1862288 CTGGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTAGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC------G--TC---GGAGA
* * * * *
1862353 ACCTGACCGGCGA-CATTGGGGTTCCGGCAACCGGGGGGGCCGGGGGGTGTGCGTACATGATGTG
120 ACCTGACCGGCGAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * * * *
1862417 CGATGGGTGCCGGTAGTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCCAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAA
* * *
1862482 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1862547 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTT
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A-ATTTTTT
* * *
1862612 TTTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
378 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCCAAA
* ** *
1862676 AAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGT
442 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1862741 CTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCAT-AAAATG
** * * *
1862806 GCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTT
571 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1862871 GCGCATCCTGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGC-CTGCTCGTTTCGT
636 GCACATCCCGTCTCTCTAGCCGACGTAGTG----CCCGCCCGCCCACCCGCAC-GCTCGTTTCAT
* * * * * **
1862935 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATTGATCAGATCGGACCGAAGGTTATAGC
696 CGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA-AGATCGGACCGGACCGAGGGTTACGGC
* * * *
1863000 AGCAAGATCGACAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTCGCGCATCCCACCCCTCTG
760 AGCAAGATCGGCAGCACACAGAGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTG
* * * * *
1863065 GCCGGCTGAGC-ACCCGCATGCTTGTTTCATGGGA-GGACTTAGGCATACAGAGTTCATTCCCAG
825 GCCGGCTGAGCGA-CCGCACGCTCGTTTCCT-GGATTGACTTAGGCATACGGAGTTCATTCCCAG
1863128 TCTAA
888 TCTAA
* * * * *
1863133 GCATACGGAGTTCATTGCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
* * * * * *
1863198 CTCGGGCATATGCTGGTGTCGTATTTTTCTTCGAT-GGGGCACCATCGTCAGAGAACTTGATCGG
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCG-TCGGGGCACCATCGTCGGAGAACCTGACCGG
1863262 CG-GCATTGGGGT
130 CGAGCATTGGGGT
1863274 AGTAGTACCG
Statistics
Matches: 2473, Mismatches: 275, Indels: 162
0.85 0.09 0.06
Matches are distributed among these distances:
879 63 0.03
880 123 0.05
881 9 0.00
882 88 0.04
883 18 0.01
884 1 0.00
885 221 0.09
886 222 0.09
887 207 0.08
888 213 0.09
889 134 0.05
890 20 0.01
891 142 0.06
892 1 0.00
893 11 0.00
895 72 0.03
896 75 0.03
897 41 0.02
899 25 0.01
902 220 0.09
903 18 0.01
904 173 0.07
905 89 0.04
908 1 0.00
909 60 0.02
910 219 0.09
911 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
GAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCT
CTAGCCGACGTAGTGCCCGCCCGCCCACCCGCACGCTCGTTTCATCGATTGGCTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCACACAG
AGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGACCGCACGC
TCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1862035 original size:888 final size:893
Alignment explanation
Indices: 1859554--1863273 Score: 4583
Period size: 902 Copynumber: 4.2 Consensus size: 893
1859544 GTTGACTTAG
** * *
1859554 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTA-CGGCATCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TAGCGGTAGCACATGCTGG
* * * *
1859618 GCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAACATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--TG
* * * *
1859683 AACCTGATCGATGGTATTGGGGTTCCGACGATCAGGGGGGCCAAGGGGGTGTGCACACATGATGT
125 -ACC-G-GCGA--GCATTGGGGTTCCGACAATCAGGGGGGCC-AGGGGGTGTGCGCACATGATGT
* * *
1859748 GTGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
1859813 AACCGCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1859878 TGGGGACACTTTTTTCAAATGGTCACAAATTCTTGT--ACA-C-----TTTGGGTGAATTATTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTT
* ** *
1859935 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCATCCAAAAA
379 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAA
* *
1860000 AATTTTTAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
444 AATTTTAAAAAATCTCA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
1860064 TTGCCATGAAACTTCTCGTGAAAGCTTAAGGAACCATTGTATGGATTTGCAAGCCATCAAAATGG
508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1860129 CATTGGGACACAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGACTTG
573 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * * * * * * * * *
1860194 CACATCCCGCCTCTCTAGTTGGCATACTGCCCGTCGGCCC-TCCGTCAGGTCATTTCGTCGATTG
638 CACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGATTG
* * ** * * *
1860258 GCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGATTGAACCAAGGGTTGCGGCAGC---A
703 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGA
* * * * * *
1860320 --GGCAG-----AGA--GGGACCCGATCGATCCTCGACTTGCGTATCCCGCCCCTTTGGCCGACT
768 TCGGCAGCACACAGAGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * *
1860376 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GAGCGACCGCACGCTCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
1860437 GCATACGGAGTTCATT-CCAGTCTTAGATCAGACCAGACCGAGGGTTA-CAATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TAGCGGTAGCACATGCTGG
* *
1860500 GCTTC-AGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCATCGTCGTCGGAGCATCGTCGG
65 GC-TCGGGCATGTGCTGGTGCCATATTTTTCTTCGTC-GGGGCA-------C----CATCGTCGG
**
1860563 AGAACCTGACCGGC-AGCATTGGGGTTCCGGTAATC-GGGGGGCCAGGGGGTGTGCGCACATGAT
117 AGAACCTGACCGGCGAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGAT
*
1860626 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
182 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
1860691 CACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGA
247 CAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
1860755 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTT
* * * * *
1860820 TTGTGCCTGCCAACAAAAATACAAGGATCACGTCTACCATG-TCTGTGGCCAAAACTCCTTTCGA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTC-GGGGCCAAAACTCCTTCCAA
* *
1860884 AAAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATA-AAAACGAGTCG
441 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
1860947 TCTTGCCATGAAACTTCACGTGAAGGCTTATGGAACCATTGTATGAATTTACAAGCCATAAAAAT
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAAT
*
1861012 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
571 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1861077 TGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCACTCGCACGCTCGTTTCATCGG
636 TGCACATCCCGTCTCTCTAGCCGA-CGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGA
* *
1861141 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-GGGTTGA-GGTAGC
700 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-ACGGCAGC
* * *
1861204 AAGATTGGCAGCACACAGAGGGGGATCCGACCGACCC-CTGGCTTGCGC-TGCCCACCCCTCTGG
764 AAGATCGGCAGCACACAGAGGGGGACCCGATCGACCCTC-GGCTTGCGCAT-CCCACCCCTCTGG
* *
1861267 CCGGCTCAGC-ACC-CACGCTCGTTTCCTGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
827 CCGGCTGAGCGACCGCACGCTCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1861330 AA
892 AA
* * * * *
1861332 GCATACGGAGTTCATTTCCAGTCTATGATCGGACTGGACCGAGGGTAGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
* * *
1861397 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCTGGGCACCATCGTCGGAGAACCTGACCGTC
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
1861462 GA-CTTTGGGGTTTCGACGATC-GGGGGGCCAGGGGTCTGTGCGCACATGATGTGCGATGGGTGC
131 GAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGG-GTGTGCGCACATGATGTGCGATGGGTGC
* *
1861525 TGGCACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAA
*
1861590 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1861655 TTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTTAATTTTTTTTTACATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * **
1861720 TAAAAATACAAGGATCACGTCTACCAAGCTCGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
1861785 ATCTCAAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAAC
455 ATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * **
1861850 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT-AAAATGCCATTGGCACGTA
520 TTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
1861914 GAAATATGAGGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCATGCACATCCCGTCT
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCT
* *
1861979 CTCTAGCCGACGTAGTGCCCGCCCGTCCACCCACCCGCTCGTTTCATCGATTGGCTTAGGCATAC
650 CTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATAC
* * * * * *
1862044 GGAGTTAATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGTAAGATCGGTAGCACAC
715 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCACAC
** * * * *
1862109 AGAAAGGGACCCGATCGATCCC-CGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCA
780 AGAGGGGGACCCGATCGA-CCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGACCGCA
* *
1862173 CGCTCG-TTCCATGGGTTGACTT-GCGCATACGGAGTTCATTCTCAGTCTAA
844 CGCTCGTTTCC-TGGATTGACTTAG-GCATACGGAGTTCATTCCCAGTCTAA
* * *
1862223 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
*
1862288 CTGGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTAGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC------G--TC---GGAGA
* * * * *
1862353 ACCTGACCGGCGA-CATTGGGGTTCCGGCAACCGGGGGGGCCGGGGGGTGTGCGTACATGATGTG
120 ACCTGACCGGCGAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * * * *
1862417 CGATGGGTGCCGGTAGTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCCAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAA
* * *
1862482 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1862547 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTT
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTG-A-ATTTTTT
* * *
1862612 TTTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
378 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAA
** ** *
1862676 AAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGT
442 AAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1862741 CTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATG
507 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
1862806 GCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTT
572 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
1862871 GCGCATCCTGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCCCGCCCGCCTGCTCGTTTCGTC
637 GCACATCCCGTCTCTCTAGCCGACGTAGTG----CCCGCCCGCCCACCCGCCCGCTCGTTTCATC
* * * * * **
1862936 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATTGATCAGATCGGACCGAAGGTTATAGCA
698 GATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA-AGATCGGACCGGACCGAGGGTTACGGCA
* * * *
1863001 GCAAGATCGACAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTCGCGCATCCCACCCCTCTGG
762 GCAAGATCGGCAGCACACAGAGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTGG
* * * * *
1863066 CCGGCTGAGC-ACCCGCATGCTTGTTTCATGGGA-GGACTTAGGCATACAGAGTTCATTCCCAGT
827 CCGGCTGAGCGA-CCGCACGCTCGTTTCCT-GGATTGACTTAGGCATACGGAGTTCATTCCCAGT
1863129 CTAA
890 CTAA
* * * * *
1863133 GCATACGGAGTTCATTGCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
* * * * * *
1863198 CTCGGGCATATGCTGGTGTCGTATTTTTCTTCGAT-GGGGCACCATCGTCAGAGAACTTGATCGG
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCG-TCGGGGCACCATCGTCGGAGAACCTGACCGG
1863262 CG-GCATTGGGGT
130 CGAGCATTGGGGT
1863274 AGTAGTACCG
Statistics
Matches: 2465, Mismatches: 285, Indels: 158
0.85 0.10 0.05
Matches are distributed among these distances:
879 55 0.02
880 122 0.05
881 11 0.00
882 88 0.04
883 18 0.01
884 1 0.00
885 219 0.09
886 219 0.09
887 209 0.08
888 215 0.09
889 134 0.05
890 20 0.01
891 142 0.06
892 1 0.00
893 11 0.00
895 72 0.03
896 75 0.03
897 41 0.02
899 25 0.01
902 220 0.09
903 18 0.01
904 174 0.07
905 88 0.04
909 61 0.02
910 219 0.09
911 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGC
GAGCATTGGGGTTCCGACAATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
TCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCACACA
GAGGGGGACCCGATCGACCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGACCGCACG
CTCGTTTCCTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1862226 original size:26 final size:26
Alignment explanation
Indices: 1862197--1862249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1862187 GTTGACTTGC
*
1862197 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1862223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1862249 G
1 G
1862250 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1863137 original size:26 final size:26
Alignment explanation
Indices: 1863107--1863159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1863097 GAGGACTTAG
1863107 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1863133 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1863159 G
1 G
1863160 ACCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1863384 original size:26 final size:26
Alignment explanation
Indices: 1863348--1863400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1863338 GTTGACTTAG
1863348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1863374 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1863400 G
1 G
1863401 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1864363 original size:158 final size:159
Alignment explanation
Indices: 1864069--1864436 Score: 481
Period size: 158 Copynumber: 2.3 Consensus size: 159
1864059 CCCACCCGCC
* * * * * *
1864069 CACTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCACTCCCAGTCTAAGATCAGATCGGACCA
1 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
* * *
1864134 AGGGTTGCGGCAGCAGGATTGGCAGTACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATC
66 AGGGTTGCGGCAGCAGGAGTGGCAGCACGCAGAGGGGGACCCAACCGATCCTCAGCTTGCGCATC
*
1864199 CAGCCCCTC-GACCGGCTGAGCGCCTGCA
131 CAGCCCCTCTGACCGACTGAGCGCCTGCA
* *
1864227 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCT
1 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
* * *
1864292 AGGGTTGTGGCAGCAGGGGTGGCAGCACGCAGAGGGGGACCCAACCGATCC-CTGGCTTGCGCAT
66 AGGGTTGCGGCAGCAGGAGTGGCAGCACGCAGAGGGGGACCCAACCGATCCTC-AGCTTGCGCAT
** * *
1864356 CTC-GCCCCTCTGGTCTACTGAGCGCCTGTA
130 C-CAGCCCCTCTGACCGACTGAGCGCCTGCA
* * * * *
1864386 CGCTCGTTTCCTGGGTTGACTTAGGAATACAGAGTTTATTCCCAGTCTAAG
1 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1864437 CATACGGAGT
Statistics
Matches: 183, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
157 1 0.01
158 121 0.66
159 61 0.33
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
AGGGTTGCGGCAGCAGGAGTGGCAGCACGCAGAGGGGGACCCAACCGATCCTCAGCTTGCGCATC
CAGCCCCTCTGACCGACTGAGCGCCTGCA
Found at i:1864441 original size:26 final size:26
Alignment explanation
Indices: 1864412--1864462 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1864402 TGACTTAGGA
* *
1864412 ATACAGAGTTTATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
*
1864438 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
1864463 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:1865332 original size:26 final size:26
Alignment explanation
Indices: 1865302--1865354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1865292 GTTGACGTAG
1865302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1865328 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1865354 G
1 G
1865355 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1868006 original size:26 final size:26
Alignment explanation
Indices: 1867970--1868022 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1867960 GTTGACTTAG
1867970 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1867996 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1868022 G
1 G
1868023 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1868066 original size:899 final size:900
Alignment explanation
Indices: 1866173--1868651 Score: 3292
Period size: 899 Copynumber: 2.7 Consensus size: 900
1866163 CACCCGTTCT
* * * * *
1866173 CAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAC
1 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCG-ACTGAGGGTTGGGGCAGCAC
* * * * * **
1866238 ATG-TCGGGCTCGAGTATGTGCTGGTGCCT-TATTTTTCTTCGTCGGGGTACCATCGTGGGAGCA
65 ATGCT-GGGCTCGGGCAAGTGCTGGTG-CTGTATTTTTCTTCTTCGGGGCACCATCGCCGGAGCA
*
1866301 TCACCGGAGAACCT-ACCGACGGCATTGGGGGGTTCCGACGATCGGGGTGTGCC-ACGGGGGTTG
128 TCACCGGAGAACCTGACCGACGGCATT--GGGGTTCCGACGATCGGGG-GGGCCGA-GGGGG-TG
* * * *
1866364 TGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCACTT-TATTGGCCCCCTATCCCTCACCAA
188 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAACAA
* * *
1866428 ACCTTGAAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCC
253 ACCTCG-AGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1866493 A-TACAAGTGTC-GTAAATTTGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTGGA
316 ATTA-AAGTGTCTG-AAA--TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
1866556 GTGTTCTAGCTGAAATTTTTTTTGTGCATG-CAATAAAACTACAAGGAATCACGTCTACCAAATT
377 GT-TTTTAGCTG-AA-TTGTTTTGTGCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTT
* ** * * * * *
1866620 TGGGG-CAAAACTCCTTTCGAAAAAAAAATTAAAAAAACTCCGAACAGCAAAAAGTTTCAAAATC
438 TGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATC-CCGAACCGAAAAAATTTTGAAAATC
* *
1866684 GTGAAAAATAGAAAACGAGTTG-CTTG-CATGGAAACTTCACCGTGAAGGCTTAAGGGACCATTG
501 GTGAAAAATAGAAAATGAGTCGTCTTGCCAT-GAAACTTCA-CGTGAAGGCTTAAGGGACCATTG
* * * * * *
1866747 TATGGATTTACCAGGCCATAAAAAATGGCATTGGCATGCAGAAA-ATGAGATGTGCCTAAACCCA
564 CATGAATTTA-CAAGCCAT-AAAAATGGCATTGGCACGTAGAAATATAAGATGTGCCTAAACCCA
*
1866811 CCTACCACCCTATCAATCCAAC-GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCACCTG
627 CCTACCACCCTATCGATCC-ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CACCTG
* ** *
1866875 CCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG
688 CCCACCCG-CCGCCAGCTCGTTTCGTCGGTTGGCTTACACATACGGAGTTCATTCCCAGTCTAAG
* * * *
1866940 ATCGGCCCGGATCGAGAGTTACGGCAGCAGGATCAGCAGCACATAAAGGGGGACCCGATCGATCC
752 ATCAGACCGGATCGAGAGTTACGGCAGCAGGATCAGCAGCACACAAAGGGGGACCCGACCGATCC
* * * * * * *
1867005 CCGACTTGCGCATCCCGCCCGTCTGGTCGTTGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTA
817 CCGACTTGCGCATCCCGCCCCTCTGGTCGCTGAGCGCCCGCACGCTCATTTCGCGAGTTGACTTA
*
1867070 GGCATACGGAGTTCATTCC
882 GGCATACAGAGTTCATTCC
* * * *
1867089 CAGTCTAAGCATATAAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGGGGTAGCAC
1 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GACTGAGGGTTGGGGCAGCAC
* *
1867154 ATGCTGGGCTCGGGCAAGTGCTGGTGCTGCATTTTTCTTCTTCGAGGCACCATCGCCGGAGCAT-
65 ATGCTGGGCTCGGGCAAGTGCTGGTGCTGTATTTTTCTTCTTCGGGGCACCATCGCCGGAGCATC
* *
1867218 AGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACA
130 A-CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCA
* *
1867283 CATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCG
194 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAACAAACCTCG
* *
1867348 AGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGT
259 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
1867413 GTCTGCAATGGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
324 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
1867478 ATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
389 ATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
1867543 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAAAAAATG
454 TCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAATTTTGAAAATCGTGAAAAATAGAAAATG
* * * * *
1867608 ACTGGTCTTGCCATGAAACTTCACGTGAAGGCCTAATGGA-CATTAG-ATCAATTTACAAGCCAT
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GCATGAATTTACAAGCCAT
* *
1867671 AAAAATGGCATTGGCACGTAGAAATCTAAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCC
582 AAAAATGGCATTGGCACGTAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
1867736 ACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGT-GCCTGCCCACCCG-C-CCA-CTCGTTTC
646 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCACCTGCCCACCCGCCGCCAGCTCGTTTC
* * **
1867797 GTCGGTTGGCTTACACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTGG
711 GTCGGTTGGCTTACACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGAGTTACGG
* * * *
1867862 CAGCAGGATC-GATAGCACGCAAAGGGGGACCCGACCGATCCCTGACTTGCGCATCCTGCCCCTC
776 CAGCAGGATCAG-CAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTC
* * *
1867926 TAGTTGGCTGATCGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACAGAGTTCATTCC
840 T-GGTCGCTGAGCGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACAGAGTTCATTCC
* *
1867988 CAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGATTGAGGGTTGGGGCAGCAC
1 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GACTGAGGGTTGGGGCAGCAC
* * * *
1868053 ATGCTGGGCTCGGGCAAGGGCTGGTGCCGTTTTTTTCTT-TACCGGGGCACCATCGCCGGAGCAT
65 ATGCTGGGCTCGGGCAAGTGCTGGTGCTGTATTTTTCTTCT-TCGGGGCACCATCGCCGGAGCAT
* * ** * * *
1868117 CACCGAAGAACCTGATCGGTGGCATTGGGGTTCCGACGAACGGGGGGGCCGGGGGGGTGTTCGCA
129 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCA
** * * *
1868182 CAAAATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGGTCCCTATCTCTCAACAAACCTCG
194 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAACAAACCTCG
*
1868247 AGAACTCACACCCCCTTAAAGAGCATTTGAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
259 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
1868312 GTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
324 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
1868377 ATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCT
389 ATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
1868442 TCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAATG
454 TCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAA-TTTTGAAAATCGTGAAAAATAGAAAATG
*
1868507 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATA
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATA
* * *
1868572 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAACCGATCCC
583 AAAATGGCATTGGCACGTAGAAATAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
1868637 CGACTTGCGCATCCC
647 CGGCTTGCGCATCCC
1868652 ACCCTTTTGG
Statistics
Matches: 1388, Mismatches: 150, Indels: 66
0.87 0.09 0.04
Matches are distributed among these distances:
897 1 0.00
898 127 0.09
899 553 0.40
900 96 0.07
902 11 0.01
904 22 0.02
905 10 0.01
906 84 0.06
907 97 0.07
908 42 0.03
909 11 0.01
910 43 0.03
912 47 0.03
913 57 0.04
914 36 0.03
915 22 0.02
916 115 0.08
917 14 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGACTGAGGGTTGGGGCAGCACA
TGCTGGGCTCGGGCAAGTGCTGGTGCTGTATTTTTCTTCTTCGGGGCACCATCGCCGGAGCATCA
CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCAACAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTTTAAAAAATCCCGAACCGAAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGTAGAAATATAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTCACCTGCCCACCCGCCGCCAGCTCGTTTCGTCGG
TTGGCTTACACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGAGTTACGGCAGCA
GGATCAGCAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCG
CTGAGCGCCCGCACGCTCATTTCGCGAGTTGACTTAGGCATACAGAGTTCATTCC
Found at i:1868487 original size:26 final size:26
Alignment explanation
Indices: 1868443--1868494 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1868433 AAAACTCCTT
* *
1868443 CCGAAAAAATTTTAAAAAATCCTGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
**
1868469 CCGAAAAAAGTTTCGAAAATCATGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
1868495 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCATGAA
Found at i:1868734 original size:26 final size:26
Alignment explanation
Indices: 1868703--1868755 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1868693 GTTGACTTAG
1868703 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1868729 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1868755 G
1 G
1868756 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1869331 original size:26 final size:26
Alignment explanation
Indices: 1869302--1869354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1869292 GTTGACTTAG
*
1869302 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1869328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1869354 G
1 G
1869355 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1869702 original size:26 final size:26
Alignment explanation
Indices: 1869660--1869712 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1869650 GTTGACTTAG
* *
1869660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
*
1869686 GCATACGGGGTTAATTCCCAGCCTAA
1 GCATACGGAGTTAATTCCCAGCCTAA
1869712 G
1 G
1869713 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGCCTAA
Found at i:1869777 original size:358 final size:356
Alignment explanation
Indices: 1869121--1869781 Score: 869
Period size: 358 Copynumber: 1.8 Consensus size: 356
1869111 CTGCTCGCAC
** * * *
1869121 GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGATCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * * *
1869186 GGGCTGCGACAACAGGATCGACAGCATGCAAAGGGGGTCCCGATCGATCCCCGACTTGCGAATTC
66 GAGCTACGACAACAGGATCGACAGCA-GCAAAGGGGGACCCGACCGATCCCCGACTTGCGAATCC
** * * ** * *
1869251 TGCCCCTCTGGCGGTTGAACGCTCGGACGCTCGTTCCGTGGGTTGACTTAGGCATGCGGAGTTCA
130 TGCCCCTCTGGCGACTGAACACCCACACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
1869316 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCACAGGTTGCAGCA
195 TTCCCAGTCTAAGCATACGGAGTTAATTCCCAGCCTAAGATCAGATCGAACCACAGGTTGCAGCA
*
1869381 GCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGCTTGCGCATCCCAGCT
260 GCACATGCTGGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGCTTGCGCATCCCAGCT
1869446 CTCTGGCCGGCATTGTGCCCGCCCGCCCGCCT
325 CTCTGGCCGGCATTGTGCCCGCCCGCCCGCCT
* * * * *
1869478 GCTCGTTTTGTTGGTTGGCTTAGGCATACAGAGATCATTCCCATTCTAAGATCAGACCGAACTGT
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGATCATTCCCAGTCTAAGATCAGACCGAACCGA
* * * * * * *
1869543 GAGTTACGACAGCAGGATCGGCAATGC-GCAGAGGGGGACCCGGCCGATCCCCGCCTTGCGCATC
66 GAGCTACGACAACAGGATCGAC-A-GCAGCAAAGGGGGACCCGACCGATCCCCGACTTGCGAATC
* * *
1869607 CTGCCCCTCTGGCCGACTGAGCACCCACACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTT
129 CTGCCCCTCTGG-CGACTGAACACCCACACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTT
* **
1869672 CATTCCCAGTCTAAGCATACGGGGTTAATTCCCAGCCTAAGATCAGATC-AGA-CTGAGTGTTGC
193 CATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGCCTAAGATCAGATCGA-ACCACAG-GTTGC
* * *
1869735 GGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTT
256 AGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTT
1869782 TGTCGGGGCA
Statistics
Matches: 257, Mismatches: 42, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
357 118 0.46
358 137 0.53
359 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.25
Consensus pattern (356 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGATCATTCCCAGTCTAAGATCAGACCGAACCGA
GAGCTACGACAACAGGATCGACAGCAGCAAAGGGGGACCCGACCGATCCCCGACTTGCGAATCCT
GCCCCTCTGGCGACTGAACACCCACACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTAATTCCCAGCCTAAGATCAGATCGAACCACAGGTTGCAGCAG
CACATGCTGGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGCTTGCGCATCCCAGCTC
TCTGGCCGGCATTGTGCCCGCCCGCCCGCCT
Found at i:1870593 original size:26 final size:26
Alignment explanation
Indices: 1870557--1870609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1870547 GTTGACTTAG
* *
1870557 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1870583 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1870609 G
1 G
1870610 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1871865 original size:159 final size:159
Alignment explanation
Indices: 1871625--1871991 Score: 493
Period size: 159 Copynumber: 2.3 Consensus size: 159
1871615 CGCCCGCCCA
* * * * *
1871625 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACGGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAG
* *
1871690 GGTTGCAGTACCAGGATCGACAGCACACAGAGGGTGACCCGATCGACCCCTGACTTGCCCATCCT
66 GGTTGCAGCACCAGGATCGACAGCACACAGAGGGGGACCCGATCGACCCCTGACTTGCCCATCC-
** * * *
1871755 GGCCCC-CTAGCTGGCTGAGCACCCGCATG
130 CACCCCTCTAGCCGGCTGAACACCCGCACG
* * *
1871784 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAG
** * * * * *
1871849 GGTTGCAGCAGTAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCTGACTTGCGCATCCC
66 GGTTGCAGCACCAGGATCGACAGCACACAGAGGGGGACCCGATCGACCCCTGACTTGCCCATCCC
* *
1871914 ACCCCTCTAGCCGGTTGAACGCCCGCACG
131 ACCCCTCTAGCCGGCTGAACACCCGCACG
*
1871943 CTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1871992 CATACGGAGT
Statistics
Matches: 180, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 4 0.02
159 176 0.98
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (159 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAG
GGTTGCAGCACCAGGATCGACAGCACACAGAGGGGGACCCGATCGACCCCTGACTTGCCCATCCC
ACCCCTCTAGCCGGCTGAACACCCGCACG
Found at i:1872001 original size:26 final size:26
Alignment explanation
Indices: 1871965--1872017 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1871955 GTTGACTTAG
1871965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1871991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1872017 G
1 G
1872018 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1872894 original size:26 final size:26
Alignment explanation
Indices: 1872864--1872916 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1872854 GTTGACTTAG
1872864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1872890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1872916 G
1 G
1872917 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1873519 original size:900 final size:897
Alignment explanation
Indices: 1871783--1874266 Score: 3711
Period size: 900 Copynumber: 2.8 Consensus size: 897
1871773 GCACCCGCAT
* * * * *
1871783 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGATCAAACCGGACCG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCC-AGTCTAAGATCAGACCAGACCG
* * * * ** * *
1871847 AGGGTTGCAGCAGTAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCTGACTTGCGCATC
65 AGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
* * * * *
1871912 CCACCCCTCTAGCCGGTTGAACGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
**
1871977 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGA
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-
* * * *
1872042 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCACCGG
259 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
1872107 AGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGTGGGGGTG
324 AGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGATG
* * * *
1872172 TACGCACATGATGTACGATGGGTGCTGGTACATGGCCCTTATATTGG-CCCCTATCCCTCATCAA
388 TGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
1872236 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1872301 TAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
1872366 AGCTGAATGTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
583 AGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
* * * *
1872431 ACACCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
647 ACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAC
1872496 AAAACGAGTCGTCTCGCCATGAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTAACAAG
712 AAAACGAGTCGTCTCGCCATGAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTAACAAG
1872561 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCG
777 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCG
*
1872626 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTTATGCCCGCCCGCCCGCCC
842 ATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTGATGCCCGCCCGCCCGCCC
* ** * *
1872682 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTTAGATTGGACCAAACTGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
1872747 GGGTTGCGGCAGGAGGATTGGTAGCATGCAAAGGGGGAACCGGCCGATCCCCGGCTTG-GAAATC
66 GGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG-CATC
* *
1872811 CCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
1872876 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGGGGGTTGCAG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-G
* * * * * * *
1872941 TAGTACATGCTGGGCTCGAGCATCTGCTGGTGCCACATTTTTCTTTGTTGGGGCGCCAACGCCGG
259 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * *
1873006 AGCATCGCCGGGGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGATG
324 AGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGATG
* * *
1873071 TGCGCACATGATCTGTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAA
388 TGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
1873136 AACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAAT
453 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
1873201 TAAAGTGTCTGAACTGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
518 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
1873266 AGCTGAATTTCTTTGTGCATGCCAACAAAAATACAAGGATCATGACTACCAATTTTGGGGCCAAA
583 AGCTGAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
**
1873331 ACTCCTTTCGAAAAAATTTTAAAAAAT-TCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
647 ACTCCTTTCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
1873395 CAAAACGAGTCGTCTCGCCATGAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTAACAA
711 CAAAACGAGTCGTCTCGCCATGAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTAACAA
1873460 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATC
776 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATC
* * *
1873525 GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGTCC
841 GATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTGATGCCCGCCCGCCCGCCC
* *
1873582 GCTCACTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
1 GCT--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGA
** * * *
1873647 CCGAGGGTTATGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGCCAATCCCCAGCTTGCGC
62 CCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * *
1873712 ATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGA
127 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
1873777 GTTCATTCCTAGTCTAAGCTTACGAAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTG
192 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
1873842 CGGCAACACATGCTGGGCTCGAGCATGTACTGGTACCGCATTTTTCTTCGTCGGGGCACCATCGC
257 C-GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGC
* * * * * * *
1873907 CGGAGCATCGTCAGAGAACCTAACTGGCGGCATTGCGGTTCCGACGATCGGGGGGCCCAGGGGGT
321 CGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGA
* *
1873972 TGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCTTC
386 TGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1874037 AAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
451 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* ** * *
1874101 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTACACACTTCCAATTT
516 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
1874166 TTAGCAGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
581 TTAGCTGA-ATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * *
1874231 AAAAT-CTTTCTGAAAAAAATTTAAAAAATCCCGAAC
645 AAACTCCTTTC-GAAAAAATTTTAAAAAATCTCGAAC
1874267 GGAAGGCTTA
Statistics
Matches: 1416, Mismatches: 155, Indels: 25
0.89 0.10 0.02
Matches are distributed among these distances:
898 1 0.00
899 372 0.26
900 445 0.31
901 5 0.00
902 186 0.13
903 84 0.06
904 322 0.23
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCA
GCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAG
CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGATGTGC
GCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATACAAAA
CGAGTCGTCTCGCCATGAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTAACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCC
ACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTGATGCCCGCCCGCCCGCCC
Found at i:1873807 original size:26 final size:26
Alignment explanation
Indices: 1873771--1873820 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1873761 GACTTAGGCA
* *
1873771 TACGGAGTTCATTCCTAGTCTAAGCT
1 TACGAAGTTCATTCCAAGTCTAAGCT
1873797 TACGAAGTTCATTCCAAGTCTAAG
1 TACGAAGTTCATTCCAAGTCTAAG
1873821 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCAAGTCTAAGCT
Found at i:1875098 original size:839 final size:841
Alignment explanation
Indices: 1873427--1875105 Score: 2424
Period size: 841 Copynumber: 2.0 Consensus size: 841
1873417 AACTTCACGT
**
1873427 GAAGGATTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
1 GAAGGATTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
* * *
1873492 GAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGC
66 AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGC
* * * * * * *
1873557 CGGCGTGGTGCCCGCCCGCCCGTCCGCTCACTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTC
131 CGACGTAGTGCCCGCCAGCCCGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * *
1873622 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATTGGCAGCACGTAGAGGGG
196 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATAGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * **
1873687 GACCCGGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGCGCCCGCACGTTCATT
261 GACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTCGCCGACTGAGCGCCCGCACACTCATT
* *
1873752 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCTTACGAAGTTCATTCCAAGTC
326 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCAAGTC
* *
1873817 TAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTACTGGTACCGCA
391 TAAGATCGGACCAGACCGAGGGTTGCGGCAACACATACTAGGCTCGAGCATGTACTGGTACCGCA
* * *
1873882 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTAACTGGCGGCATTGCGGTT
456 TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGCGGTT
* * *
1873947 CCGACGATCGGGGGGCCCAGGGGGTTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCC
521 CCGACGATCGGGGGGCCCAGGGGGGTGTGCACACATGATATGCGATGGGTGCTAGTACTTGGCCC
* * *
1874012 TTATATTGGCCCTCTATCCCTCTTCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGAT
586 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCCCCCTTAAAGAGCATTTGAGAT
* ** *
1874077 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
651 TTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTCTCAAATGGTCA
*
1874142 CAAAATCTTACACACTTCCAATTTTTAGCAGATTTTTTTTGTGCATGCCAACAAAAATACAAGGA
716 CAAAATCTTACACACTTCCAATTTTTAGCAGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
1874207 TCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAAAATTTAAAAAATCCCGAACG
781 TCATGTCTACAAAGTTTGGGGCCAAAAATCTTTCTGAAAAAAATTTAAAAAATCCCGAACG
* * *
1874268 GAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
1 GAAGGATTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
* * *
1874333 AAAGATGTGCCTAAACCCACCTACTACCCTATCGATGCACGGCTTGCGCATCCCATCTCTCTGGC
66 AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGC
*
1874398 CGACGTAGTGCCCGCCAGCCCG-CCGGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
131 CGACGTAGTGCCCGCCAGCCCGTCC-GCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
* * ** * *
1874462 CATTCCCATTCTATGATC-GAACTGGACTGAGGGTTGA-AGTAGCAGGATCGGCAGCACGCAGAG
195 CATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTT-ATAGCAGCAGGATCGGCAGCACGCAGAG
* * ** * *
1874525 GGGGACCCGGTCGAAT-CCCAGCTTACGCATCCCGCCCCTTTCGCCGGTTGAGTGCCCGTACACT
258 GGGGACCCGG-CCAATCCCCAGCTTACGCATCCCGCCCCTCTCGCCGACTGAGCGCCCGCACACT
* * * *
1874589 CGTTTCGTGGGTTGACTT-GGCATATGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCC
322 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCA
* * * * * * * *
1874653 AGTCTAAGATC-GATCGGACTGAGGGTTGCGGTAGCACATACTAGGCTCGGGCATGTGCTGGTGC
387 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATACTAGGCTCGAGCATGTACTGGTAC
* * * * *
1874717 CGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACC-GACCGACGGCATTGG
452 CGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGC
* * *
1874781 GGTTCCGGCGATCGAGGGGG-CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTT
517 GGTTCCGACGATCG-GGGGGCCCAGGGGGGTGTGCACACATGATATGCGATGGGTGCTAGTACTT
1874845 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
581 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC-CCCCCTTAAAGAGCATT
*
1874910 TGAGATTTTAGAGGTTAGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTCTCAAA
645 TGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTCTCAAA
** ** * *
1874975 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATA
710 TGGTCACAAAATCTTACACACTTCCAATTTTTAGCAGAGTTTTTTTGTGCATGCCAACAAAAATA
* * *
1875040 CAAGGATCATGTCTACAAAGTTT-GGGCCTAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTG
775 CAAGGATCATGTCTACAAAGTTTGGGGCC-AAAAAT-CTTTCTGAAAAAAATTTAAAAAATCCCG
1875103 AAC
838 AAC
1875106 TGTAAAAAGT
Statistics
Matches: 742, Mismatches: 88, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
838 112 0.15
839 278 0.37
840 60 0.08
841 287 0.39
842 5 0.01
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (841 bp):
GAAGGATTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGC
CGACGTAGTGCCCGCCAGCCCGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATAGCAGCAGGATCGGCAGCACGCAGAGGGG
GACCCGGCCAATCCCCAGCTTACGCATCCCGCCCCTCTCGCCGACTGAGCGCCCGCACACTCATT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCAAGTC
TAAGATCGGACCAGACCGAGGGTTGCGGCAACACATACTAGGCTCGAGCATGTACTGGTACCGCA
TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGCGGTT
CCGACGATCGGGGGGCCCAGGGGGGTGTGCACACATGATATGCGATGGGTGCTAGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTCTCAAATGGTCA
CAAAATCTTACACACTTCCAATTTTTAGCAGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCATGTCTACAAAGTTTGGGGCCAAAAATCTTTCTGAAAAAAATTTAAAAAATCCCGAACG
Found at i:1875545 original size:26 final size:26
Alignment explanation
Indices: 1875509--1875561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1875499 GTTGACTTGG
*
1875509 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1875535 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1875561 G
1 G
1875562 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1876445 original size:26 final size:26
Alignment explanation
Indices: 1876406--1876458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1876396 GTTGACTTAG
1876406 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
1876432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
1876458 G
1 G
1876459 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:1877353 original size:26 final size:26
Alignment explanation
Indices: 1877323--1877372 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1877313 AACTTAGGCT
1877323 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
* * *
1877349 TACGGAGTTCTTTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
1877373 ATCAAACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:1878241 original size:26 final size:26
Alignment explanation
Indices: 1878205--1878257 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1878195 GTTGACTTAG
* *
1878205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1878231 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1878257 G
1 G
1878258 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1878646 original size:895 final size:896
Alignment explanation
Indices: 1874268--1881147 Score: 8443
Period size: 888 Copynumber: 7.7 Consensus size: 896
1874258 ATCCCGAACG
* *
1874268 GAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * * *
1874333 AAAGATGTGCCTAAACCCACCTACTACCCTATCGATGCACGGCTTGCGCATCCCATCTCTCTGGC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-GCTCTCTGGC
* *
1874398 CGACGTAGTGCCCGCCAGCCCGCCGGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
130 CG-CGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** * *
1874463 ATTCCCATTCTATGATCGAACTGGACTGAGGGTTGAAGTAGCAGGATCGGCAGCACGCAGAGGGG
190 ATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * * *
1874528 GACCCGGTCGAATCCCAG-CTTACGCATCCCGCCCCTTTCGCCGGTTGAGTGCCCGTACACTCGT
255 GACCCGATCG-ATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
1874592 TTCGTGGGTTGACTT-GGCATATGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCCAGT
319 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
1874656 CTAAGATC-GATCGGACTGAGGGTTGCGGTAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGT
384 CTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGC
* *
1874720 ATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACC-GACCGACGGCATTGGGGT
449 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
1874784 TCCGGCGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCC
514 TCCGGCGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
1874849 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
578 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
1874914 ATTTTAGAGGTTAGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTCTCAAATGGT
643 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
1874979 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAG
708 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
1875044 GATCATGTCTACAAAGTTT-GGGCCTAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTG
773 GATCACGTCTACCAAGTTTGGGGCC-AAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
1875108 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACAT
836 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* **
1875169 GAAGGCTTAAGGGACCATTGTATGAATTTACAAACCAT-AAAATGGCATTGGCACGTAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* *
1875233 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGGC
* * *
1875298 CGACGTAGTGCCCGACCCCCTACCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTC
130 CG-CGTAGTGCCCG---CCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * * * *
1875363 ATTCCCAGTCTAAGACCGGACCGGATTGAAGGTT-AGGACAGTAGGATCGACAGCACCCAGAGGG
190 ATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGAGG-TAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * *
1875427 GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTGTGGCCAGTTGAGCACCCGCACGCTCAT
254 GGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
1875492 TCCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCCGTCTAAGCATGCGGAGTTCATTCCCAGT
319 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
1875557 CTAAGATCAGACCGGATC-ATGGGTTGCGGCAGAACATGCTGGGCTCAGGCATGTGGTGGTGCCG
384 CTAAGATCGGATCGGACCGA-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAG
** * ** *
1875621 CATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTAACCGGCGGCATTGGGG
448 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* *
1875686 TTCCGGCGATCGGGGGGACC-GGGTGGGTGTTCGCACATGATGTGCAATGGGTGCTGGTACTTGG
513 TTCCGGCGATCGGGGGG-CCAGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
1875750 CCCCTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCTTTAAAGAGCATTTG
576 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
1875815 AGATTTTACAGGTTTGCTACCAGTAGTCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATG
641 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
1875880 GTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA-AAAAAGTAC
706 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TAC
* * ** *
1875944 AAGGATCACGTCTACCGAGTTTGGGGCTAAGAA-TCCTTATAAAAAATTTTTAAAAAATCCCAAA
770 AAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTCGAAAAAA-TTTTAAAAAATCCCGAA
* *
1876008 TCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
833 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
**
1876072 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
1876137 GAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTTCGCATCTCGTCTCTCTGGT
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGG-
* * * * *
1876202 CGGCGTAGT----GCCCGCCCGTCCGTTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
129 CCGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
1876263 CCAGTCTAAGATCAGACCGGATC-GAGGGTT-ATGGTAGCAGGATCGGCAAGTACGCAGAGGGGG
194 CCAGTCTAAGATCGGACCAGA-CAGAGGGTTGA-GGTAGCAGGATCGGC-AGCACGCAGAGGGGG
* * * * * * * * *
1876326 ACCCGGTCGATCCTCGATTTACGTATCCCACCCCTTTGGCCGACTGAGCGCCTGCACGCTCGTTC
256 ACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
1876391 CGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
321 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * ** * *
1876456 AAGATCGGATCGGATCGAGGGTTGCGACAGCACATGCTGGAATCGAGCTTGTGCTGGTGCCA-CA
386 AAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCA
* * * * *
1876520 ATTTTCTTCATCGGTGCACCATCGTCGGAGCATCGTCGGAGAACCTCACCGGCGGCATTGGAGTT
450 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
1876585 CCCGCGATCAGGGGTGCC-GGGGGGTGCCGAGGGGGGTGCGCACATGCTGTGCGATGGGTGCTGG
515 CCGGCGATC-GGGGGGCCAGGGGGGT----------GTGCGCACATGATGTGCGATGGGTGCTGG
* * *
1876649 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTCAAGG
569 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * *
1876714 GCATTTGAGATTTTACAGCTTTGTTGCTAGTAGCCATTAAAGAGTCTAAAATGGGGACACTTTTT
634 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
1876779 TCAAATGGTCACAAAATTTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACA
699 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACA
* * *
1876844 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCACAACTCCTTCCGAAAAAATTTTAAAAATT
763 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAAT
* * * ** *
1876909 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTGTCACCATCAAACTT
827 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
1876974 CACGT
892 CACGT
* *
1876979 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAGAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
1877044 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGGC
* * * * * *
1877109 TGGCGTAGTGCCCGCCCGTCCGCCCACCAGTTCATTTCGTCAGTTGGCTTAGGCATACGGAATTC
130 -CGCGTAGTGCCCGCCCG-CC-CGC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
1877174 ATTCCCAGTCTAAGATTGGACC-GAACCA-AAGGTTGCAGCT-GCGGGATCAGCAACACGCAGAG
190 ATTCCCAGTCTAAGATCGGACCAG-A-CAGAGGGTTG-AGGTAGCAGGATCGGCAGCACGCAGAG
* * * * * *
1877236 GGGGACCTGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTC
252 GGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * * *
1877301 GTTTCATGGGTTAACTTAGGCTTACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCTTTCCTA
317 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * * *
1877366 GTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
382 GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA
* *
1877431 GCATTTTTCTTCGTCGGGGCACCA---TC--A-C--CGT---AGAACCTGACCTGCGGCATTAGG
447 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
1877485 GTTCCGGCGATCCGGGGGGCCA-GGGGGTGAGCGCACATGATGTGCGATGGGTGCTGCTACTTGG
512 GTTCCGGCGAT-CGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
1877549 CCGTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
576 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
1877614 AGATTTTGCAGGTTTGCTGCCAATAGCCATTAACGTGTCTGAAATGGGGACACTTTTTTGAAATG
641 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
1877679 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCAAACAAAAATACA
706 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * *
1877744 GGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCATTCTACAAAACTTTTAAAAAATCCTGAACC
771 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGA-AAAAATTTTAAAAAATCCCGAACC
* * * *
1877809 ACAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGT
835 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ** *
1877871 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATAG
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
*
1877936 GAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTGGCC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTCTCTGGCC
* * *
1878000 AGCGAAGTGCCTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
131 -GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
1878065 CAGT-TGAAGATTGGATCAAAAAGAGGGTTGTGGTAGTAGGATCGGCAACACGTAGAGGGGGACC
195 CAGTCT-AAGATCGGACCAGACAGAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * *
1878129 CGATCGA-CCCCGACTCATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
259 CGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
1878193 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAG
324 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* *
1878258 ATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTT
389 ATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTT
* * * *
1878323 TCTTCGTCAGGGCACCATCGTCGGAGCATCG-CCGAGAACTTGACCGACGGCATAT-GGGTTCCG
454 TCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT-TGGGGTTCCG
* * *
1878386 ACGATCGGGGTGGCCAGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
518 GCGATCGGGG-GGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
1878451 TATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
582 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
1878515 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
647 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
1878580 AAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
712 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
1878645 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAATATCCCGAACCGCAAAA
777 ACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* *
1878710 AGTTTCACAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
841 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
1878766 GAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCGTAAAAATTGCTTTGGCACATAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * ** *
1878831 GAAGATGTCCCTAAACCGACCTACCACTGTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGGC
** * * * *
1878896 CGACGTAACGCCCGTCCGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTC
130 CG-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
1878961 CCAGTCTAAGGTAGGACCAGACCA-AGGGTTGCGGCAGCAGGATCGGCAGCACGTAAAGGGGGAC
194 CCAGTCTAAGATCGGACCAGA-CAGAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
** * * *
1879025 CCGGCCGATCCCC-AGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTC
258 CCGATCGATCCCCGA-CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
1879089 TTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTACCAGTCTA
322 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
1879154 AGATCGGATCGGATCGAGAGTT-CTGGCTGCACGTGCTTGGCTCGGGCATGTGCTGGTGTCA-TA
387 AGATCGGATCGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCA
** * * **
1879217 TTTTTCTTCACCGGGGCACCA---TC---G--T--T-AGAGAACCTGATCGGCAACATTGGGGTT
450 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
1879271 TCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGCCC
515 CCGGCGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
1879335 TTATACTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGA
579 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
1879400 TTTTACAGGTTTGCTACTAGTAGCAATTAAAGTCTCTGAAATGGGGACACTGTTTTCAAATGGTC
644 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1879465 AGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGG
709 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* *
1879530 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTA
774 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCA
* ** * * *
1879595 AAATGTTTGGAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGGAACTTCACGT
838 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
1879654 GAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCTTTGGCACACAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
1879719 GAAGATGTGCCTAGACCCACCTAACACCCTATC-ATTTCACGGCTTGCGCATCCCGTCTCTCTGG
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCG-CTCTCTGG
* * * * *
1879783 CCAGCGTAGTGCCCGCCCGCCCGCTCGCTCTTTTTGTCGGTTGGCTTAGGTATACGGAGCTCATT
129 CC-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * * *
1879848 CCCAATATAAGATCAGACCAGGCTGAGGGTTGAGGCAGTAGGATCGACAGCACGGAGAGGGGGAC
193 CCCAGTCTAAGATCGGACCAGACAGAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
* *
1879913 CTGATCGATCCCCG----A-G-A-------------------T--------GCATGCTCGTTTCG
258 CCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
** *
1879945 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTTATTCCCAGTCTAA
323 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * **
1880010 GATCGGACCGGATGGAGGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCA-CATT
388 GATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATT
* * *
1880074 TTTCTTCGTCGGGGCACAATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCT
452 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* *
1880139 GGCGATCGGGAGGGCC-GGGTGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGAACTTGGCCCT
517 GGCGATCGGG-GGGCCAGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
1880203 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
580 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
1880268 TTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTCCAAATGGTCA
645 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
1880333 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTATCCATGCCAACAAAAATACAAGGA
710 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * * *
1880398 TCACGTCTACCATGTTTAGGGCCAAAACACCTCCCGAAAAAATTTTAAAAAATCCCAAACTGTAA
775 TCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* ** * * *
1880463 AAAATTTTGAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGT
839 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
**
1880521 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
1 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
1880586 AAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGC
66 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGGC
* * * *
1880651 CGGTGTAGTGCCTGCCCGCCCGCCTGC-C----C-AC---T-G--TAGGCATACGGAGTTCATTC
130 C-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** *** * * * * *
1880704 CCAGTCTAAGATCAAATTGGACAGAGGGTTGCA-GTAGCAGGATCTGCATCATGTAGTGGGGGAC
194 CCAGTCTAAGATCGGACCAGACAGAGGGTTG-AGGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
1880768 CC-AGTCGATCCCTGGCTTACGCATCCCGCCCTTCTGGCCGGCTGATCGCTCGCACGCTCGTTTC
258 CCGA-TCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
1880832 GTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTA
322 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
1880897 AGATCGGATCGGACCGAGGGTTGCTACAGCAGATGCTGGGCTCGGGCATGTGTTAGTGCCGTATT
387 AGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATT
** * * * * *
1880962 TTTCTTCACCGGGGCACCATCGTCGGAGGATCGCCAGAGAACTTGACCGGCAGG-ATTGTGGTTC
452 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC-GGCATTGGGGTTC
* * * * *
1881026 CGACGATCGATGGGG-CA-GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCTCT
516 CGGCGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
1881089 TATATTGGCCCCCTATCCCTCATTAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATT
580 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
1881148 GTGGCTGCAG
Statistics
Matches: 5189, Mismatches: 642, Indels: 311
0.84 0.10 0.05
Matches are distributed among these distances:
854 1 0.00
855 213 0.04
856 2 0.00
857 1 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 3 0.00
863 2 0.00
865 4 0.00
866 39 0.01
867 466 0.09
868 1 0.00
880 1 0.00
882 1 0.00
883 1 0.00
885 186 0.04
886 183 0.04
887 59 0.01
888 733 0.14
889 10 0.00
890 24 0.00
891 3 0.00
892 248 0.05
893 184 0.04
894 5 0.00
895 426 0.08
896 134 0.03
897 370 0.07
898 184 0.04
899 13 0.00
900 244 0.05
901 91 0.02
902 107 0.02
903 415 0.08
904 96 0.02
905 2 0.00
906 190 0.04
907 253 0.05
908 12 0.00
909 1 0.00
911 7 0.00
912 2 0.00
913 2 0.00
914 193 0.04
915 69 0.01
916 2 0.00
917 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTCTCTGGCC
GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCAGACAGAGGGTTGAGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
ATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTC
TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCG
ATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
Found at i:1879139 original size:26 final size:26
Alignment explanation
Indices: 1879103--1879155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1879093 GTTGACTTAG
*
1879103 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
1879129 GCATATGGAGTTCATTACCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
1879155 G
1 G
1879156 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTACCAGTCTAA
Found at i:1880453 original size:867 final size:855
Alignment explanation
Indices: 1879080--1880673 Score: 2370
Period size: 867 Copynumber: 1.9 Consensus size: 855
1879070 GCGCCCGCAC
* * ***
1879080 GCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATT
* * * * * **
1879145 ACCAGTCTAAGATCGGATCGGATCGAGAGTTCTGGCTGCACGTGCTTGGCTCGGGCATGTGCTGG
66 ACCAGTCTAAGATCGGACCGGATCGAGAGTTCTGACAGCACATGCTGGGCTCAAGCATGTGCTGG
* * *
1879210 TGTCATATTTTTCTTCACCGGGGCACCATCGTTAGAGAACCTGATCGGCAACATTGGGGTTTCGA
131 TGTCACATTTTTCTTCACCGGGGCACCATCGTCAGAGAACCTGACCGGCAACATTGGGGTTTCGA
* *
1879275 CGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATA
196 CGATCGGGAGGGCCGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGAACTTGGCCCTTATA
*
1879340 CTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
261 CTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
* *
1879405 CAGGTTTGCTACTAGTAGCAATTAAAGTCTCTGAAATGGGGACACTGTTTTCAAATGGTCAGAAA
326 CAGGTTTGCTACCAGTAGCAATTAAAGTCTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAA
* * *
1879470 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCAC
391 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATCCATGCCAACAAAAATAAAAGGATCAC
* * * **
1879535 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAATG
456 GTCTACCAAGTTTAGGGCCAAAACACCTCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAA
* * *
1879600 TTTGGAAAATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAA
521 TTTGGAAAATCATGAAAAATAA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
1879664 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGC
585 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGC
* * *
1879729 CTAGACCCACCTAACACCCTATC-ATTTCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT
650 CTAAACCCACCTAACACCCTATCGA-TCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT
1879793 GCCCGCCCGCCCGCTCGCTCTTTTTGTCGGTTGGCTTAGGTATACGGAGCTCATTCCCAATATAA
714 GCCCGCCCGCCCGCTCGCTCTTTTTGTCGGTTGGCTTAGGTATACGGAGCTCATTCCCAATATAA
1879858 GATCAGACCAGGCTGAGGGTTGAGGCAGTAGGATCGACAGCACGGAGAGGGGGACCTGATCGATC
779 GATCAGACCAGGCTGAGGGTTGAGGCAGTAGGATCGACAGCACGGAGAGGGGGACCTGATCGATC
1879923 CCCGAGATGCAT
844 CCCGAGATGCAT
*
1879935 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTTATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATT
* * *
1880000 CCCAGTCTAAGATCGGACCGGATGGAGGGTTGC-GACAGCACATGCTGGGCTCAAGCATGTGCTG
66 ACCAGTCTAAGATCGGACCGGATCGAGAGTT-CTGACAGCACATGCTGGGCTCAAGCATGTGCTG
** * **
1880064 GTGTCACATTTTTCTTCGTCGGGGCACAATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCA
130 GTGTCACATTTTTCTTCACCGGGG--C-A----C----CATCGTCAGAGAACCTGACCGGCAACA
* * * *
1880129 TTGGGG-TTCTGGCGATCGGGAGGGCCGGGTGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGA
184 TTGGGGTTTC-GACGATCGGGAGGGCCGGG-GGGTGTGCACACATGATGTGCGATGGATGCTGGA
* * *
1880193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
247 ACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAG
* * * *
1880258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACT-TTTT
312 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTCTCTGAAATGGGGACACTGTTTT
*
1880322 CCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTATCCATGCCAACAA
377 -CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATCCATGCCAACAA
* *
1880387 AAATACAAGGATCACGTCTACCATGTTTAGGGCCAAAACACCTCCCGAAAAAATTTTAAAAAATC
441 AAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTCCCGAAAAAATTTTAAAAAATC
* * *
1880452 CCAAACTGTAAAAAATTTTGAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTC
506 CCAAACCGTAAAAAATTTGGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTC
**
1880517 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
571 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* *
1880582 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTC
636 ATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
* * *
1880647 TGGCCGGTGTAGTGCCTGCCCGCCCGC
701 TGGCCAGCGTAGTGCCCGCCCGCCCGC
1880674 CTGCCCACTG
Statistics
Matches: 652, Mismatches: 70, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
855 132 0.20
856 1 0.00
857 1 0.00
858 1 0.00
862 1 0.00
865 3 0.00
866 49 0.08
867 461 0.71
868 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (855 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATT
ACCAGTCTAAGATCGGACCGGATCGAGAGTTCTGACAGCACATGCTGGGCTCAAGCATGTGCTGG
TGTCACATTTTTCTTCACCGGGGCACCATCGTCAGAGAACCTGACCGGCAACATTGGGGTTTCGA
CGATCGGGAGGGCCGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGAACTTGGCCCTTATA
CTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
CAGGTTTGCTACCAGTAGCAATTAAAGTCTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATCCATGCCAACAAAAATAAAAGGATCAC
GTCTACCAAGTTTAGGGCCAAAACACCTCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAA
TTTGGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCC
TAAACCCACCTAACACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGC
CCGCCCGCCCGCTCGCTCTTTTTGTCGGTTGGCTTAGGTATACGGAGCTCATTCCCAATATAAGA
TCAGACCAGGCTGAGGGTTGAGGCAGTAGGATCGACAGCACGGAGAGGGGGACCTGATCGATCCC
CGAGATGCAT
Found at i:1882161 original size:26 final size:26
Alignment explanation
Indices: 1882125--1882177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1882115 CTTGAGTTAG
*
1882125 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1882151 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1882177 G
1 G
1882178 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1883051 original size:26 final size:26
Alignment explanation
Indices: 1883021--1883073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1883011 GTTGACTTAG
1883021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1883047 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1883073 G
1 G
1883074 ATCGGGCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1883675 original size:906 final size:892
Alignment explanation
Indices: 1881260--1883949 Score: 3668
Period size: 906 Copynumber: 3.0 Consensus size: 892
1881250 GTTGACTTAG
* * * ***
1881260 GCATATGGAGTTCATTCCCAGTCTAAGATC-GGATCGGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGGCT-AGACCGAGGGTTGCCACAGCACATGCTGG
* * * *
1881324 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGAAGCACCACCAGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCG-AGCA-C-GCAGAG
* *
1881389 AACCT-ATCCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGC
126 AACCTGA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
1881453 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * * * *
1881518 TGCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGCAGCCATTAAAATGTCTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAAGTGTCTGAAATG
* * *
1881583 CGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTGAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
1881648 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CAAAACTTCTTCCAAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCCAAAAAAA
*
1881712 TTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
448 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAGTCATCTT
1881776 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
* * * *
1881841 TTGGCATGTAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGCCTTGGG
577 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * * * *
1881905 CATCCCGCCTCGCTAGCCCGCGTAGT------GCCCGCCTG-CCTGCTTGTTTCATCGGTTGGCT
642 CATCCCGCCTCTCTGGCCCGTGTAGTGCCCCCGCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCT
* *
1881963 TAGGCATACAGAGTTCATTCCCGGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATC-
707 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
1882027 AGCAGCATGCAGAGAGGGACTCGGCGGATCCCCGGCTTGCGCATCCCGCCACTTTGGCCGCCTGA
772 A-CAGCATGCAGAG-GGGAC-CCGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * * *
1882092 GCGCCCGCACGTTCATTTCGTGGCTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
1882151 GCATATGGAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTTG-CAGCAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGGCTAGACCGAGGGTTGCCA-CAGCACATGCTGG
*
1882215 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA--TC--GC-CG--GAGAACC
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCACGCAGAGAACC
* *
1882273 TGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGA
130 TGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGA
*
1882338 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1882403 CGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGA
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCTATTAAAGTGTCTGAAATGGG
* * *
1882468 GACATTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAG-TTTTAACTGAATTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
1882532 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCCTTCCAAAAAAAT
386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACT-CCTTCCAAAAAAAT
* ** * *
1882596 TTTAAAAAATCCCGAACCACAAAAAG-TTTGGAAAATCACGAAGAATAGAAAACGAGTCATCTTG
449 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGG-AAATCATGAAAAATAGAAAACGAGTCATCTTG
*
1882660 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
* * * *
1882725 TGCCACGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGACTTGCGC
578 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * *
1882790 ATCCTGCCTCTCTGGCCCGTGAAGTGCCCGCCCGCCCGCCCGCCCGCTTGCTCGTTTTGTCGGTT
643 ATCCCGCCTCTCTGGCCCGTGTAGTG-CC-CCCGCCCGCCCG-CC-C-TGCTCGTTTCGTCGGTT
* * * * * *
1882855 GGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGTTTAGACCAGACTGAGGGTTGTGGCAGCAGG
703 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* *
1882920 ATCGAAAGCATGCAGAGGGGCACCCAGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGC
768 ATCGACAGCATGCAGAGGGG-ACCC-GCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * *
1882985 AGAGGGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1883047 GCATACGGAGTTCATTCCTAGTCTAAGATCGGGCTAGACCGAGGGTTGCCACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGGCTAGACCGAGGGTTGCCACAGCACATGCTGGG
* * **
1883112 CTCGAGCATGTGCTAGCGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TC-GAGCA-CG-CAGAGA
** * * *
1883177 ACCTGACCGGTGGCATAGGGCTTCCGGTGATCGGGGGGTCGGAGGGGTGTGCGCACATGATGTGC
127 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-CGG-GGGGTGTGCGCACATGATGTGC
* *
1883242 GATTGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1883307 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCTATTAAAGTGTTTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCTATTAAAGTGTCTGAAATG
* *
1883372 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1883437 GCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTTC-AAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCAAAAAAA
* * * * *
1883501 TTTTAAAATATCCTGAACCGTAAAAAGTTTTGGTAATCGTGAAAAATAGAAAATGAGTCGTCTTG
448 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAGTCATCTTG
*
1883566 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAGGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
* * * *
1883631 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATAGATCCACAACTCGCGC
578 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* ** *
1883696 ATCCCGTCTCTCTGGCGGGTGTAGTGCTCTCCCGCCCGACCGCCCT-CTCGTTTCGTCGGTTGGC
643 ATCCCGCCTCTCTGGCCCGTGTAGTGC-C-CCCGCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGC
* * * * ** *
1883760 TTAGGCATACAAACTTCATTCCTAGTCTAAAATCAGACGGGACCGAGGGTTGCGGTAGCAGGATC
706 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
1883825 GACAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGTATCCCACCCCTCTGACCGGCTGA
771 GACAGCATGCAGA-GGGGACCCG-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * *
1883890 GCGCCCACACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1883949 G
1 G
1883950 ATCGAACCAG
Statistics
Matches: 1579, Mismatches: 172, Indels: 85
0.86 0.09 0.05
Matches are distributed among these distances:
880 32 0.02
881 10 0.01
882 64 0.04
883 322 0.20
884 70 0.04
885 2 0.00
888 2 0.00
891 92 0.06
892 8 0.01
894 1 0.00
895 5 0.00
896 269 0.17
897 3 0.00
899 2 0.00
901 1 0.00
902 176 0.11
903 5 0.00
904 3 0.00
905 6 0.00
906 401 0.25
907 104 0.07
908 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGGCTAGACCGAGGGTTGCCACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGAGCACGCAGAGAACCT
GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCTATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCCTGAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCC
TCTCTGGCCCGTGTAGTGCCCCCGCCCGCCCGCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGC
AGAGGGGACCCGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1884560 original size:173 final size:174
Alignment explanation
Indices: 1884271--1884619 Score: 495
Period size: 173 Copynumber: 2.0 Consensus size: 174
1884261 GGGTTGCAGC
* **
1884271 AGCAGGATCGACAGCATGCAGAGGGGCACCCAGCCGATCCCCGACTTGCTTATCCCACCCCTCTG
1 AGCAGGATCGACAGCACGCAGAGGGGCACCCAGCCGATCCCCGACTTGCGCATCCCACCCCTCTG
* * * * *
1884336 GCTGGTTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTC
66 GCCGGCTGAACGCCCGCACACTCCTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
** * * * *
1884401 -AAGCATATGGAGTTCATTTCTAGTCTAAGATCGGACCAGATCG
131 TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
* *
1884444 AGCAGGATCGACAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCACCCCTCT
1 AGCAGGATCGACAGCACGCAGAGGGGCACCCAG-CCGATCCCCGACTTGCGCATCCCACCCCTCT
* ** *
1884508 GGCCGGCTGAGCGCCCGCACGTTCCTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
65 GGCCGGCTGAACGCCCGCACACTCCTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGT
1884573 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
130 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
1884618 AG
1 AG
1884620 GGTTACGGTA
Statistics
Matches: 154, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
172 1 0.01
173 114 0.74
174 39 0.25
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (174 bp):
AGCAGGATCGACAGCACGCAGAGGGGCACCCAGCCGATCCCCGACTTGCGCATCCCACCCCTCTG
GCCGGCTGAACGCCCGCACACTCCTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCACAGTC
TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
Found at i:1884587 original size:26 final size:26
Alignment explanation
Indices: 1884551--1884603 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1884541 GTTGACTTAG
* *
1884551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1884577 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1884603 G
1 G
1884604 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1885467 original size:26 final size:26
Alignment explanation
Indices: 1885437--1885489 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1885427 GTTGACTTAG
1885437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1885463 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1885489 G
1 G
1885490 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1886564 original size:886 final size:877
Alignment explanation
Indices: 1884577--1888001 Score: 4190
Period size: 887 Copynumber: 3.9 Consensus size: 877
1884567 CCCAGTCTAA
* * * *
1884577 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTT-ACGGTAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGA-GGCAGCACATGCTGG
* * *
1884641 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAG
* * * * * *
1884706 AACCTGACTGGCGGCTTTGGGGTTCCGGCGATCGGGGGGT-CGGGGGGTGTGCGCACATGACGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGTGCGCACATGATGTA
* * *
1884770 CGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATTCCTCATAAAACCTTGAGAACTCAC
195 CGATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1884835 ACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1884900 GGGAAC-ATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1884964 TGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
* * * *
1885029 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1885094 GCCATGAAACTTAACGTGAAGGCTGAATGGACCA-T-TATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1885157 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * * *
1885222 CATCCCGTCTTTCTGGTAGACGCAGT--------GCCCG---C-CC-GCTCATTTCGTCGTTTGG
649 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCGCCTGCTCGTTTCATCGGTTGG
* **
1885274 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-AAGTAGCAGGAT
714 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGAT
* * * *
1885338 -AGGTAGCACGTAGAGGGGGACCCGACCGATCCC-CGGTTGGCGCATCCCGCCCCTCTGGTCGGC
779 CA-GCAGCACGTAGAGGGGGACCCGACCGATCCCTGGGTT-GCGCATCCCGCCCCTCTGGCCGAC
* **
1885401 TGAGCACCCGTACACTCATTTCATGGGTTGACTTAG
842 TGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAG
1885437 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC-------GGACCAGAC
* * * *
1885502 CGAGGGTTGCA-GCAGCACATGCTGGGCTCGAGCATGTGTTGCTGCCGCATTTTTCTTCGTCGAG
40 CGAGGGTTG-AGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
** * *
1885566 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGCGTTCCAACGATCGGGGGG
104 GCACCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
1885631 -GCGGGGGGTGTGCGCACATGATGTACGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 TCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTA
*
1885695 TCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTG
* *
1885760 CCAGTAGCCATTAAAGTGTCTGAAATGGGCATAATTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1885825 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACGAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * * * *
1885890 TTGGGGTAAAAAAT-CTTCCGAAAAAGTTTTAAAAAATTCTGAATCGTAAAATGTTTCGAAAGTC
428 TTGGGGCAAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
1885954 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
1886019 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * * ** *
1886084 ACCACCCTATTGATCCACGACTTGCGCATCTCGCCTCTCTAACCGGCGTAGTGCCC-CCCGCCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* **
1886148 -CCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCTGTCTAAGATTGGA-
688 CCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* * **
1886211 CAGGACCGAGGGTTGTGGTAGCAGGATCAACAGCATGCGGAGGGGGACCCGACCGATCCCTGGGT
753 CA-GACCGAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGGT
* * * * * *
1886276 TACGCATCCCACCGCTC-GGCCGACTAAGCGCCCGTATGCTCATTTCGTGCGTTGACTTAG
817 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAG
* * * *
1886336 GCATACGGAGTTCATTCCCAGTGTAAGTTCGGACCGGACCGAGGGTTGAGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGCACATGCTGGG
* * * * * *
1886401 CTCGGGCATATGCTGGTGCTGCATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCATCGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
** * *
1886466 ACCTGACCGGTGGCATTGGGGTTCCGACGTTCGGGGGGTCCGGGGGGTGTGCTCACATGATGTGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGTGCGCACATGATGT-A
* *
1886531 -GATGGGTGCTGGCACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1886595 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1886659 GGGGACACTTTTTTCAAATGGTCAC---A------A-A-----A-----T--C---------TTG
324 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
1886693 TGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAAATCCTTCTGAAAA
1886757 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
** * **
1886822 CACCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATCAC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1886887 ATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
583 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1886952 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCACCCGTCCTCCCGCTCGTTTCA
648 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-CCCG-CCT---GCTCGTTTCA
* * * *
1887017 TCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGGTCAGACCAGACCGAGGGTTGTGGC
706 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGT
* * * * *
1887082 AGCAGGATCGGCATCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGTATCCCGCCCCTCTA
771 AGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGGTTGCGCATCCCGCCCCTCTG
* * * *
1887147 GCAGACTGAGCGCCTGCATGCTCATTTTATGGGTTGACTTAG
836 GCCGACTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAG
* * * * **
1887189 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGTTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGCACATGCTGGG
* **
1887254 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
* * * *
1887319 ACCTGATCGACGGCATTGGGGTTCTGACGATCGGGGGGGCTGGGTGGGTGTGCGCACATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGG-GGGTGTGCGCACATGATGTA
* * * *
1887384 TGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
195 CGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1887449 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1887514 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTTAGCTGAATTTTTTT
324 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTT
* * * * *
1887579 TTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAA
* * ** * * *
1887644 AATTTTAAAAAATCCAGAACCGTAAAGAGTTTTGAAAGTCGTGAAAAATAGAAAATGAGTGGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
1887709 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * **
1887774 ATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTAT
583 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
1887839 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGTCCGGCC-GTTTGTTTCGTCGGTTG
648 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCGCCTGCTCGTTTCATCGGTTG
* * ** * **
1887903 GCTTAGGCATTC-AGAGATCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTACGGTAGCAG
713 GCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGCAG
* * *
1887966 GATCGGTAGCACGTAGAGGGGGACCCGACGGATCCC
776 GATCAGCAGCACGTAGAGGGGGACCCGACCGATCCC
1888002 CTATCCCTTC
Statistics
Matches: 2204, Mismatches: 260, Indels: 183
0.83 0.10 0.07
Matches are distributed among these distances:
842 45 0.02
843 215 0.10
844 8 0.00
848 4 0.00
849 3 0.00
851 1 0.00
852 117 0.05
853 191 0.09
854 106 0.05
855 57 0.03
858 2 0.00
860 19 0.01
862 1 0.00
863 1 0.00
864 2 0.00
865 2 0.00
866 2 0.00
869 2 0.00
870 2 0.00
872 1 0.00
873 172 0.08
874 112 0.05
875 1 0.00
876 1 0.00
878 3 0.00
879 98 0.04
880 2 0.00
883 2 0.00
884 3 0.00
886 367 0.17
887 371 0.17
888 106 0.05
890 2 0.00
893 2 0.00
895 5 0.00
897 2 0.00
898 4 0.00
899 116 0.05
900 49 0.02
901 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCGCCTGCTCGTTTCATCGGTTGGCT
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCA
GCAGCACGTAGAGGGGGACCCGACCGATCCCTGGGTTGCGCATCCCGCCCCTCTGGCCGACTGAG
CGCCCGTATGCTCATTTCATGGGTTGACTTAG
Found at i:1888561 original size:26 final size:26
Alignment explanation
Indices: 1888524--1888576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1888514 GTTGACTTAG
1888524 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
1888550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1888576 G
1 G
1888577 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1889453 original size:26 final size:26
Alignment explanation
Indices: 1889416--1889468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1889406 GTTGACTTAG
*
1889416 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1889442 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1889468 G
1 G
1889469 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1890123 original size:892 final size:891
Alignment explanation
Indices: 1888011--1892032 Score: 5135
Period size: 896 Copynumber: 4.5 Consensus size: 891
1888001 CCTATCCCTT
*
1888011 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCA
1 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* **
1888076 AGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTCAAAA
66 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA-ATCCCGAACCGTAAAAAGTTTCAAAA
* * *
1888141 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATT
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
1888206 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCA
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* **
1888271 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCTGC
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA------G-CTGC
* * * ** *
1888336 CCGCCCGCTCGTTTCATCAGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTA
318 CCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
1888401 GACTGAGGGTTACGGCAGCAAGATCAGCA-A-CATGCATAGGGGGACCCGGTCGATTCCCAGCTT
383 GACTGAGGGTTATGGCAGCAGGATC-G-ATAGCACGCAGAGGGGGACCCCGTCGATCCCCGGCTT
* ** * *
1888464 GCGCATCCCGCCCCTCTGACCGACTGAGTGCTCGCACGCTCGTTTAGTGGGTTGACTTAGGCATA
446 GCGCATCCAGCCCCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
1888529 CGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCT-GACGGAG
511 CGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAG
* *
1888593 GGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACC
575 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACC
** * ** * * * *
1888658 ATCATCAGAGCATCGCCGGAGAACCTGACCGGTGCCTTTGGGGTTCTGGTGATCGGGGGGGCCGG
640 ATCGCCAAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* *
1888723 GGGGTGTGCGCACACGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCT
705 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1888788 CATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTGCCAGT
770 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
1888853 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTA
835 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
1888910 CACTTCAACTTTTTAGCTGAATTTTTTTGTGCATACCAAC-AAAA-ACAAGGATCATGTCTACCA
1 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
1888973 AG-TTGGGGCCATAACTCCTTCCAAAAAAATTTTAAAATATCCCGAACCGCAAAAAGTTTCAAAA
66 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA-ATCCCGAACCGTAAAAAGTTTCAAAA
1889037 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
1889102 GTATGAATTTACAAGCCATAAAAATAGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCG
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
1889167 CCTACCACCCTATCGATCCATGGCTTACGCATCTCGTCTCTCAGGCCTG-CGTAGTGCCTGCCCG
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTA--G-CTGCCCG
* * *
1889231 CCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTTTAAGATTAGACCAGAC
321 CCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
1889296 CGAGGGCTATGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCCGTCGATCCCCGGCTTGTGCA
386 TGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCCGTCGATCCCCGGCTTGCGCA
* * * * * *
1889361 TGTC-GTCCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
451 T-CCAGCCCCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* *
1889425 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTG
515 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTG
* * * **
1889490 CGGCAGCACATGCTGGGCTCGGGCTTGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGC
580 CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGC
* ** *
1889555 CAAAGCATTGCCGGAGAACCTGACCGGTGGCATTGGGGTACCGGCGATCGGGGGGGCCGGGGAGG
645 CAAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GG
*
1889620 TGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
709 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1889685 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
774 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1889750 ATTAAAGTGTCTGGAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTA
839 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
1889803 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACCAAAATACAAGGATCACGTCTACCA
1 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
1889868 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAACAATCCTGAACCGTAAAAAGTTTCAAAA
66 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA-AATCCCGAACCGTAAAAAGTTTCAAAA
* * *
1889933 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGTACCATT
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
1889998 GTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* ** *
1890063 CCAACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTTTGGCCGACGTAG-TGCCCGCCCG
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTGCCCGCCCG
* *
1890127 TCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-CAGGAC
325 T--------TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GAC
** * ** ** * * * * * *
1890191 TGGAATGAGGGTTATGGTTGCAGGATCGGCAGCACGTAGAGAGGGACCCAGCCGATCCCTGACTT
381 CAGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCCGTCGATCCCCGGCTT
* ** * * * *
1890256 GCGCATCCTGTACCTCTGGCCG-GTAGAGCACCCGCACGTTCGTGTCGTGGGTTGACTTAGGCAT
446 GCGCATCCAGCCCCTCTGACCGACT-GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
1890320 ACGAAGTTCATTCTCAATCTAAGCATACGGAGTTCATTCCCAGTCTTAAGATCGGACCGGACCGA
510 ACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTC-TAAGATCGGACTGGACTGA
* * *
1890385 GGGTTGCGGGCAGCACATGCT-GGCTCGAGCATGTGTTGGGTGCCCACCTTTTTCTTCGCCGGGG
574 GGGTTGC-GGCAGCACATGCTGGGCTCGAGCATGTGCT-GGTG-CCACATTTTTCTTCACCGGGG
* * * * *
1890449 CCACCATCCGCCGGATGCCATCCACCAGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATTCG
636 -CACCAT-CGCC-AAAG-CAT-CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA-TC-
* * *
1890514 GAGGGGGGCCGGGGGGGTGGTGTGCACATGATGTGGCAACTGGGTGCCTGGTTACTTGGACCTTA
694 G-GGGGGGCC-GGGGGGT-GTGCGCACATGATGT-GCGA-TGGGTG-CTGG-TACTTGGCCCTTA
* * * *
1890579 TATTGG-CCCCTATCCCTCATCAAGACCTTGAGAACTCCACACCCCCTTACGAGAGCCTTCCGAG
752 TATTGGCCCCCTATCCCTCATCAA-ACCTCGAGAACT-CACACCCCCTTA-AAGAGCATT-TGAG
*
1890643 ATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTGGTCTGAAATGGGGACAGGTTTTTTCCAAA
813 ATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGT-GTCTGAAATGGGGACA-CTTTTTT-C--A
1890708 AATGGTCACAAAAATCTTGT-
872 AATGGTCAC-AAAATCTTGTA
1890728 CACTTCGAGTTTTTAGCCTGAATTTTTTTGTGCATGCCAACAAAAATACCAAGGATCACGTCTAC
1 CACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTAC
* * **
1890793 CAAGTTTGGGG-TAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGA
64 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAA
* *
1890857 AAATCATGAAAAATAGAAAACGGGAT-GCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
128 AAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
1890921 ATTGTATGAATTTGA-AAGCCATAAAAATGGCATTGGCACGTAGAAATCA-GAAGATGTGCCTAA
192 ATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGCAGAAAT-ATGAAGATGTGCCTAA
* *
1890984 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAG-TGCCC
255 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTGCCC
*
1891048 GCCCACCCGCTCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
320 G------C-C-CGT----TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1891113 GATCAGACCAGACTGA-GGTATATGGCAGCAGGATCGGTAGCACGTAGAGGGGGA-CCCGATCGA
373 GATCAGACCAGACTGAGGGT-TATGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCCG-TCGA
* * *
1891176 TCCCCGGCTTGCGCATCCAGCCCCTTTTACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
436 TCCCCGGCTTGCGCATCCAGCCCCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * * *
1891241 CTTAGCCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCTGTCTAAGATCGGAC
501 CTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
1891306 TAGA-TCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCA
566 TGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCA
**
1891370 CCGGGGCACCAT--------CA---CCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATC-
630 CCGGGGCACCATCGCCAAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
* * * * *
1891423 GGGGGGCCGGGTGGTGTGCGCAGATGATGTACGATGGGTGCTGGTACTTGGCCTTTATGTTGGCC
695 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* **
1891488 CCCTATCCCTCTTCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
760 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* ** * *
1891553 TGATATCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
825 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1891618 TA
890 TA
* * *
1891620 CACTCCGAGTTTTTAGCTGAATTTTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTAC
1 CACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * * *** * *
1891685 CAAGTTTGGCACTAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAAGTTTCA
64 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAATCCCGAACCG-TAAAAAGTTTCA
*
1891750 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
127 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
1891815 ATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
192 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
1891880 CCACCTACAACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCC
257 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--CG-A-CG-TAG-C
* * *
1891945 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATC-GA
315 TGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * *
1892009 ATCGGACCGAGGGTTGTGGCAGCA
379 ACCAGACTGAGGGTTATGGCAGCA
1892033 CATGCTGGAC
Statistics
Matches: 2761, Mismatches: 272, Indels: 189
0.86 0.08 0.06
Matches are distributed among these distances:
889 1 0.00
890 65 0.02
891 22 0.01
892 399 0.14
893 277 0.10
894 181 0.07
895 29 0.01
896 463 0.17
897 33 0.01
898 28 0.01
899 47 0.02
900 206 0.07
901 64 0.02
902 42 0.02
903 25 0.01
904 8 0.00
905 17 0.01
906 8 0.00
907 11 0.00
908 32 0.01
909 2 0.00
910 3 0.00
911 44 0.02
912 18 0.01
913 3 0.00
914 6 0.00
915 23 0.01
916 29 0.01
917 12 0.00
918 7 0.00
919 27 0.01
920 10 0.00
921 15 0.01
922 5 0.00
923 1 0.00
925 26 0.01
926 262 0.09
927 50 0.02
928 17 0.01
929 43 0.02
930 192 0.07
931 3 0.00
932 1 0.00
933 1 0.00
934 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCTGCCCGCCCGT
TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
GTTATGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCCGTCGATCCCCGGCTTGCGCATCCAG
CCCCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAG
CACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAAAGC
ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
Found at i:1891298 original size:26 final size:26
Alignment explanation
Indices: 1891247--1891298 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1891237 TTGACTTAGC
*
1891247 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
1891273 CATACGGAGTTCATTCCCTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1891299 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:1893303 original size:26 final size:26
Alignment explanation
Indices: 1893267--1893319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1893257 GTTGAGTTAG
*
1893267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1893293 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1893319 G
1 G
1893320 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1894290 original size:26 final size:26
Alignment explanation
Indices: 1894254--1894306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1894244 GTTGACTTAG
1894254 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1894280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1894306 G
1 G
1894307 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1895166 original size:26 final size:26
Alignment explanation
Indices: 1895130--1895182 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1895120 GTTGACTTAG
1895130 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1895156 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1895182 G
1 G
1895183 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1895279 original size:11 final size:11
Alignment explanation
Indices: 1895263--1895291 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1895253 GCCGGGGTGC
1895263 CATCGCCGGAG
1 CATCGCCGGAG
1895274 CATCGCCGGAG
1 CATCGCCGGAG
1895285 CATCGCC
1 CATCGCC
1895292 AGAGAACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.41, G:0.31, T:0.10
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:1896074 original size:26 final size:26
Alignment explanation
Indices: 1896045--1896097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1896035 GTTGACTTAG
1896045 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1896071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1896097 G
1 G
1896098 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1896966 original size:26 final size:26
Alignment explanation
Indices: 1896937--1896989 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1896927 GTTAACTTAG
*
1896937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1896963 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1896989 G
1 G
1896990 ATCAGACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1897869 original size:26 final size:26
Alignment explanation
Indices: 1897839--1897891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1897829 GTTGACTTAG
1897839 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1897865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1897891 G
1 G
1897892 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1898316 original size:872 final size:872
Alignment explanation
Indices: 1893615--1920066 Score: 18447
Period size: 862 Copynumber: 29.6 Consensus size: 872
1893605 GGCCCTTATA
* * * * *
1893615 TTGGCCCCCTGTCCCTCACCAAACCTCTAGAACTCACACCCTCTTAAAAAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1893680 CAGGTTTGCTGCCAGTA-CCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
66 CAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
1893744 AATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAAAAAAATACAAGGATCA
130 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
1893809 CGTCTACCAAGTTTGGGGCAAAAACT-CTCTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
195 CGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
1893873 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTA
259 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
1893938 AGGGATCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
324 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * * * * *
1894003 ACTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCATCTCTTTGGCCGACATAGT
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * *
1894068 GCCCGCTCGCCCG-CCC-GCTCGTTTCGTCGGTTGGCCTAGGCATACGAAGTTCATTCCCAGTCT
454 GCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** ** * * ** *
1894131 AAGATTGGACTGGACTGAGGGTT-----------A-CGGCAGGACGCAGAGGGGGACTTGGCCGA
519 AAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * ** * **
1894184 TCCCCGGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGCGTCGGCACGCTCGTTTTATGGGTTGA
584 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * * *
1894249 CTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAT
649 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
1894314 CAGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTTGT
714 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
1894379 CGAGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCCGGGGGGCCGGGG
779 CGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGAT-C--GGGG--GGGG
* * * *
1894444 GGTGTAGCACATGATGTGTGATGGGTGCTAGTACTTGGCCC
839 TGTG-CGCACATGATGTGCGATGGGTGCTGGTA------CC
* *
1894485 TTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1894550 TTTTACAGGTTTGATGCCCGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1894615 AC-AAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAATAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
** *
1894679 ATCACGTCTAAGAAGTTTGGGGCCAAAACTCCTTCTG-AAAAATTTTAAAAAATCCCGAACCGCA
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
* * * * *
1894743 AAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTCGTCTCGTCATGAAACTTCACGTGAAGGC
256 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * * * *
1894808 TTAGGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTTGAACGTAAAAATATGAAGAT
321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * * * * *
1894873 TTCCCTAAACCAACCTACCACCCTATCGATCCACGGCTCGCGCATCCCATTTCTCTGGCCGACGC
386 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * *
1894938 AGTGCCCG---GC-CG---CT--T-GTTTCATCGGTTGGCTTAAGCATACGGATTTCATTCCCAT
451 AGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * *
1894993 TCTAAGATCAGATC-GAACTGAGGGTTGTGGTAGCAGGATCGGTAGCACACAGAGGGGGACCTGG
516 TCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * *
1895057 CCGATCCCC-GCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
580 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* *
1895121 TTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
645 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
1895186 AGATCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACCTTTTTCT
710 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-
* * *
1895251 TTGCCGGGGTGCCATCGCCGGAGCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGG
774 TT--C-----G---TCG--GG-GCA----C----CATTGTCGGAGAACCTGACCGACGGCATTGG
* * * * *
1895316 GGTTCCAGCGATCGGGCGAACCGGGGGGGTGTGCTCAAATGATGTGCGATGAGTGCTGGTACTTG
818 GGTT----C--T--GGCGATCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA----
1895381 GCCC
871 --CC
* * *
1895385 TTATATTGGCCCCCTATCCCTTATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1895450 TTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
1895515 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* *
1895580 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTACAAAATCCCGAACCGCA
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
1895645 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCCCGTGAAGGC
256 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
1895710 TTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * *
1895775 GTACCTAAACCCACTTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCTGACGT
386 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * *
1895840 AGTGCCCACCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATCCCC
451 AGTGCCCGCCCGCTCG-CC-CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** *
1895905 AGTCTAAGATCGGACCAAACCGAGGGTTACGAAAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
514 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *** * *
1895970 ACCGAACCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCACATATTCATTTTGTGG
579 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
1896035 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
644 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
1896100 CAGACTAGATCTAGGGTTGCGGCGGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
709 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
1896165 TTCG-CTGAGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTTCGAT
774 TTCGTC-GGGGCACCAT----------T-GTCGGAGAACCTGACCGACGGCATTGGGG-TTC--T
* ** *
1896229 GATCGGAGGGGTTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCC
824 G-GC-GA-TCG--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* * * *
1896289 TTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCACATCCCTTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
1896354 TTTTACAGGTTTGTTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
**
1896419 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * *
1896484 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGCA
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
1896549 AAAAGTTTCAAAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
256 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
1896614 TTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAAAATGAAGAT
321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * ** * * ***
1896679 GTTCCTAAACCCACCAACCACAATATCGATCCATGTCTTGCGCATCCCGTCTCTCTGGCCAATGT
386 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
1896744 AGTGCCCG--C-CT-G-CTC-G-T--TTT-GTCGGTTGGCTTAGGCATACGGAGTACATTCCCAG
451 AGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
1896799 TCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCTGGC
516 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * * * *
1896864 CAATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGT
581 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
1896929 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
646 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
1896994 GACTATATCGAGGGTTGCGGCAACATATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
711 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
1897059 CGCCAGGGCACCATCGCCAAAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
776 CGTCGGGGCACCAT------TG--T---CGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGAT
* *
1897124 CGGAGGGGCAGGGGGGTGTGCGCA-ATGATGTGTGATAGGTGCTGGTACTTGGCCC
830 C-----GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* * *
1897179 TTATATATGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGA
1 ---T-T-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1897244 TTTTACAGGTTTGTTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1897309 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * *
1897374 ATCACGTCTACCAAGTTTGGGGCCAAAACT-CTATCCGAAACAATTTTAAAAAATCCTGAACCGC
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTTAAAAAATCCCGAACCGT
*
1897438 AAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
1897503 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGCAGAAAAATGAAGA
320 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
1897568 TGTGCCGAAATCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCG
385 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
1897633 TAGTGCCCGCCCGCTCGCCCATCTGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
450 TAGTGCCCGCCCGCTCGCCC--CTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * *
1897698 CAATCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCC
513 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * * * *
1897763 GACTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCTGTACACTCGTTTCATG
578 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
*
1897828 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
643 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
**
1897893 TCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
708 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
1897958 CTTCGTCGGGGCACCATTGTCTGAGAACCTAACTGACGGCTTTGGGGTTCTGGCGATC-GGGGGG
773 CTTCGTCGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGG
1898022 GTGTGCAG-ACATGATGTGCGATGGGTGCTGGTA-C
838 GTGTGC-GCACATGATGTGCGATGGGTGCTGGTACC
* *
1898056 TTGGCCCCCTATCACTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1898121 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
1898186 ATCTTTTACACTTCGAGTTCTTAGCTGAATTTTTTGGTGCATCCCAAAAAAAATAAAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * *
1898251 ATTTACC-AGCTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAA
196 GTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
1898315 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
1898380 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAG-AGAAATATGAAGATGTG
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTG
* * * * *
1898444 CCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTATCTCTGGTCAGCGTAGT
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * *
1898509 GCCCGCCCGCTCGCCCGCCTGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGTATACAGAGTTCA
454 GCCCGCCCGCTCG-CC-CCT--------GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
1898574 TTCCAAGTCCAAGATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCATGCAAAGGGGG
509 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * *
1898639 GCCCGACCGATCCCCGACTTGCGTATCTCGCCCCTCTAGCTGGCTGAGCACCCGCACGCTCGTTT
574 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
*
1898704 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCT
639 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
1898769 AAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCGCAT
704 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * ** *
1898834 TTTTCTTTGTTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGGCCGACGGAATTATGCTTC
769 TTTTCTTCGTCGGGGCACCAT----------T-GTCGGAGAACCTGACCGACGGCATTGGGGTTC
*** * ** * * *
1898899 CAACGATTGGGGGGGCCG-G-G--GAGGCATGTGC--T-GGTGCT--T-CAT
823 TGGCGATCGGGGGGGGTGTGCGCACATG-ATGTGCGATGGGTGCTGGTAC-C
** * * * * * * * * * * ** * ***
1898941 TTTTCTTCACTGAGGCAGCATCGTCGGAGCATTGCCGAAGAACTTGATCGGCGGCATTGGGGTTC
1 TTGGC-CCCCT-A-TC--CCTCATC-AAAC-CT--CG-AGAAC-TCA-C-ACCCCCTTAAAG---
* ** * * ****** * * * ** * * *
1899006 CGGCGATCGGGGGGGTCGGGGGGGTGTGC-GCACAAGATGTGCGA-T-GGGTG-CTGGTACT-TG
50 -AGC-AT--TTGAGATTTTACAGGTTTGCTGC-C-AG-T-AGCCATTAAAGTGTCT-GAAATGGG
* * ** ** * ** * ** *** ***
1899066 G-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
106 GACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC---
* * *** *
1899130 TGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCCGAAATGGGGA-CACTTTTTTCGA
156 TGA-ATTTT-----TTTG--TGCA-T-GCCA-AAAAAAATAC--AA---GGATCA-------CG-
* * * ** ** * ** ****
1899194 ATGGTCACAAAATCTT-GTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAA
197 -T-CT-ACCAAGT-TTGGGGC-C-AAAACTCCTT--CTGAA-AAAATT-T---T---A--AAAAA
** * ** ** ** *
1899258 TACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAAATCCTACCAAAAAAATTTAAAA--AATC-
244 T-C-CCGAAC-CG--TAAAAAGTTT-----C-AAAAAT-C-A--TGAAAAATAGAAAACGAGTCG
* *** * * * * *** * * *
1899320 CCAAACCACAATAAAAAGTTTGAAAATCGTGAAAAATAGAAAAACGAGTCGTC-TTGCCATGAAC
294 TC-TTGC-C-AT-GAAA-CTT---CA-CGTG---AA-GGCTTAA-GGGAC--CATTG-TATGAA-
* * * * ** * * * *
1899384 TTCACGTGAACGGCTTAAGGGACCCAATTGTATGAATTTACAAGGCCATAAAAATGGCCATGGGC
341 TTTAC---AA-GCCATAA---A---AA-TG---GCATTGGC-ATG-CAGAAATAT-G--A--AG-
* ** *
1899449 ATGCAGAAATATCAGATGTGCCAAACCCACCTACCACCCTAATCGATCCACGGCTTTGCGGCATC
384 ATG-TG-CCTA--A-A----CC---CAC--CTACCACCCT-ATCGATCCACGGC-TTGC-GCATC
* * * * *
1899514 CCGTCTCTCTAGCCGACGTAGTGCGCACCCGCCCTC-CACCCGTCGCTCGTTTCAG-CGGTTGGC
432 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--CTCGC-CCC-T-GCTCATTTC-GTCGGTTGGC
* * ** * * * *
1899577 TTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGTAGTA-GATT
491 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * *
1899640 GGCAGCACACATA-GGGGACCCGACCGATCCCC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGA
556 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * * *
1899703 GTGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
621 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
** *
1899768 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
686 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
1899833 CATGTGCTGGTGCCACATTTTTCTTCATTGGGGCACTATCGTCGAACCATCACCGGAGAACCTGA
751 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--T-G-----T---CGGAGAACCTGA
* ** *
1899898 TCGGTGGCATTGGGGTTCTGGTGATCGGGGGGCCGGTTGGTGTGCGCACATGATGTGCGATGGGT
805 CCGACGGCATTGGGGTTCTGGCGATC--GGGG--GG--GGTGTGCGCACATGATGTGCGATGGGT
1899963 GCTGGTACGTGGCCC
864 GCTGGTA------CC
* *
1899978 TTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1900042 TTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTATCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1900107 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* *
1900172 ATCATGTCTACC-AGCTTTGGGGCCAAAACTCCTTCTGAAGAAATTTTAAAAAAT-CCGAAACCG
191 ATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG-AACCG
* * ** * *
1900235 TAAAAGGCTTT-GAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAA
254 TAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
1900299 GGCTTAAGGGACCATTGTCTGAACTTACAAGCCAT-AAAATGGCATTGGCATGTAGAAATATGAA
318 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * ** * *
1900363 GATGTACCTAAACCCACCTACCACGCTATCGATCCACGGCTCACGCATCCTGTCTCTCTGGTCGG
383 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
1900428 CGTAGTGCCTGCCCGC-CTGCCCGCCTGCTCATTTTGTCAGTTGGCTTAGGCATACAGAGTTCAT
448 CGTAGTGCCCGCCCGCTC-G-CC-CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
1900492 TCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
510 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * *
1900557 --C--CC-A---CC--C-T--G------G------T---CGGCTGAGCGCCCGTACGTTCGTTTC
575 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
1900594 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
640 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
1900659 AGAACAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTTGTGCCACATT
705 AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * ** *
1900724 TTTCTTCATCAGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGGCC-AGCGAAATTGGGATTC
770 TTTCTTCGTCGGGGCACCA----T------T-GTCGGAGAACCTGACCGA-CGGCATTGGGGTTC
* * *
1900788 TGACGATCGGGGGCTCTGAGGGGCGTGTGTGCGCACATGTTGTGCAATGGGTGCTGGTACTTGGC
823 TGGCGATC----G----G-GGGG-G-GTGTGCGCACATGATGTGCGATGGGTGCTGGTA------
1900853 CC
871 CC
* *
1900855 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
1900920 TTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
1900985 ACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * **
1901050 ATCACGTCTACCAAGTTTGGGGCTAAAAC-CCTTTCTGAAGAAATTTTAAAAAATCTTGAACCGT
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGT
* *
1901114 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGAAGG
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* ** * *
1901179 ATTAAGGGACCATTGTACAAATTTACAAGCCATAGAAATGGCATTGGCATGCAAAAATATGAAGA
320 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
*
1901244 TGTGCCTAAACCCACCTACTC-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGC
385 TGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
1901308 GTGGTGCCTG--C-C-CG-CCC-GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCT
449 GTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *
1901367 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGGGGACCCG
514 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
1901432 ATCGATCCTCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCACCCACAGGCTCGTTTCGTGG
579 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
* * * *
1901497 GCTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
644 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * *
1901562 CGGACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCAGGCATGTG-TTGTGCCGCATTTTTC
709 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * ** *
1901626 TTTGTCGAGGCACCATTGCCAGAGCATCACCGGAGAAGCTGACCGGTGGCATTGGGGTTCCGGCG
774 TTCGTCGGGGCACCATT------G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCTGGCG
* *
1901691 ATCGGGGGGGCCGAGAGGGGTGTGTGAACATGATGTGCGATGGGTGCTGGTACTTGGCCC
828 ATC-----GG--G-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* * *
1901751 TTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1901816 TTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
1901881 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCTACAAAAATACAATG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * *
1901946 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACAC-T
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAC-CGT
*
1902010 AAAAAGCTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAG
255 AAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
1902074 GCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAG
319 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
1902139 ATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCT-TCGACGAC
384 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
1902203 GTAGTGCCCGCCCGC-CTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAAGCATATGGAGTGCATT
449 GTAGTGCCCGCCCGCTC-G-CC-CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
1902267 CCTAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGTAGGACCAGTAGCACGCAGAGGGGAAC
511 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
** ** * * * * ** * * *
1902332 TTGGTCGATCCTCGGTTTACGCATCCCGCCCTTCTGGTAGACTGAGCACCTGCACGCTTGTTTCA
576 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC-
*
1902397 TGGGTTGACTTAGGCATACGAAATTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
640 ---G-TG-----GG--T-TG--A--C--T--TAG-----GCATACGGAGTTCATTCCCAGTCTAA
* * **
1902462 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTATGGCAGCACATGCTGGG
680 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1902527 CTCAGGCATGTG-TTGTGCCGCATTTTTCTTCGTCGAGGCACCATTGCCAGAGCATCACCGGAGA
745 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATT------G--T---CGGAGA
** * * *
1902591 ACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGAGGGGTGTGTGAACATGATGT
799 ACCTGACCGACGGCATTGGGGTTCTGGCGATC-----GG--G-G-GGGGTGTGCGCACATGATGT
1902656 GCGATGGGTGCTGGTACTTGGCCC
855 GCGATGGGTGCTGGTA------CC
* * *
1902680 TTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGATA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
1902745 TTTTATAGGTTTGCTGCCAATAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1902810 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCTACAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * *
1902875 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACAC-T
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAC-CGT
*
1902939 AAAAAGCTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAG
255 AAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1903003 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
319 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
1903068 ATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-TCGACAGC
384 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
1903132 GTAGTGCCCGCCCACT-----C-G----TTTCGTCGGTTGGCTTAAGCATATGGAGTGCATTCCC
449 GTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
1903187 AGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAGGGGAACTCG
514 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * ** * * *
1903252 ATCGATCCCCGGCTTACGCATCCCACCCTTCTGGTTGACTGAGCACCCGCACGCTTGTTTCATGG
579 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
1903317 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
644 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
1903382 CGGATCAAATCGAGGGTTACGGCAGCATATGCCGGGCTCGAGCATGTGTTGGTGCCGTATTTTTC
709 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
1903447 TTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGCGACATTGGGGTT-TCGACGATCGAGGGGT
774 TTCGTCGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCT-GGCGATC----GG-
*
1903511 CCAGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCC
833 ---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* **
1903560 TTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTCCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1903625 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1903690 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * *
1903755 ATCACGTCTACCAAGTTTGGGGCTAAAACTCCTT-TCGAAAAAATTTTCAAAAATCTCGAACCGT
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGT
* ** * * *
1903819 AAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCATGTGAAGG
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
1903884 CTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGAAATATGAAGA
320 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * *
1903949 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTAGCGCATCCCATTTCTCTGGCCGACG
385 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
1904014 TAGTACCCG--C-C-CG-CCC-GCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCA
450 TAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * * *
1904073 GTCTAAGGTTAGACCAGACAGACGGTTGCAGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGG
515 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * * * *
1904138 TCAATCCCCGGCTTACGCTTCCCGCCCCTTTGGCCGGTTGAACACCCACACGCTCGTTTCGTGGA
580 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
*
1904203 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
645 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
1904268 AGACCAGACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCT
710 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * *
1904333 TCGTCAGGGCACCATCGCGGGAGCATCACCGGGGAACCTGACCGGCGGCATTGGTGTTCCGGTGA
775 TCGTCGGGGCACCAT------TG--T---CGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGA
* * **
1904398 TCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGGTCTGTGCTGGTACTTGGGCCC
829 TC------G--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-------CC
1904457 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1904522 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
1904587 ACAAAATCTTGTACAATTCGAATTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAC-AGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * * * * *
1904651 CATCACGTCTACCAAGTTTGGGGTCAAAACACTTTCCGAAAAAATTTTAAAAAATCTCGGACCGC
191 -ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
1904716 AAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTTGTCTTGCCATG-AA-TT----T--A--
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
1904771 C--AA--G---A---TAT-AA---A-AATGGCAT-----TGGCA----CAT--AGAACTATGAAG
320 CTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
1904810 ATGTACCCAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCTCGTCTCTCTGGCCGGT
384 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
1904875 GTTA-TGCCCGCTCGCCCGCCCAAT--T-ATTTCGTCGGTTGGCTTTGGCATACAGAGTTCATTT
449 G-TAGTGCCCGCCCGCTCGCCC-CTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
1904936 CCAGTCTAAGATCAGACC-GAGCCGAGGGTTGTGGTAGCAAGATCGGTAGCACGCAGACGGGGAC
512 CCAGTCTAAGATCAGACCAGA-CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
** * * * * * * * * *
1905000 CCGACCGATCCTAGACTTACGCATCTCACCCCTTTGGTCGGCTGAACACCCGCACGCTTGTTTCA
576 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * ** * * *
1905065 TAGGTTAACTCCGGCATATGGAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
641 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
1905130 GATTGGACTGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTT
706 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
*
1905195 TTCTTTGTCGGGGCACCATCATCGAAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTT-TC
771 TTCTTCGTCGGGGCACCAT--T----G---T--CGGAGAACCTGACCGACGGCATTGGGGTTCT-
* * *
1905259 GACGATCGGCGGGGCCTGGGGGGTGTGTGCACATGATGTGCGATGGGCGCTGGTACTTGGCCC
824 GGCGAT---C--GG---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* * * * *
1905322 TTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTGAAGACCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1905387 TTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCCAAATGGT
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGT
* * * * *
1905451 CACAAAATC-TGATACACTTTGAGTTTTTTGCTGAATTGTTTTGTGCATGCCAACAAAAATACGA
125 CACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * * *
1905515 GGATCTCGTCTGCCAAGGTTGGGGCCAAAACTCCTT-TCCAAAAAATTTTAAAAAATCTCGAACT
189 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACC
* *
1905579 GTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
253 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
1905644 GGATTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
318 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
1905709 GATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGG
383 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
** * * * *
1905774 CGTAGTGCCCGCCCGCTCGCCCGCCCACTCGTTTCATCGATTGG-TGTAGGCATACGAAGTTCAT
448 CGTAGTGCCCGCCCGCTCG-CC-CCTGCTCATTTCGTCGGTTGGCT-TAGGCATACGGAGTTCAT
* *
1905838 TCCCAGTCTAAGATCAGACCGGACCGAGGGTT-----------AT-GGCAGCATGCAGAGGGGGA
510 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * ** ** * * *
1905891 CCCGGCCGATCCTCGGCTTATGCATATCACCCCTCTGGCCAGCTGAGCACCCGCACGCTCATTTC
575 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
1905956 GTGGGTTGAC-TAGGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCACTGCCAGTCT
640 GTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
1906020 AAGATC-GAACATGACCTAGGGTTGGGGCAGCACATGCTGGGCTCAGGCATGTGTTTGTGTCCGC
704 AAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGC
* *
1906084 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACGCCGAAGAACCTGATCAGCGGCATTGGGGT
767 ATTTTTCTTCGTCGGGGCACCATTGTCGGAG-AA--CC--TG-ACC-G---A-CGGCATTGGGGT
*
1906149 TCCGGCGATCGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
821 TCTGGCGATC---GG---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
* * *
1906213 TTATATTGGCCCCCTATCACTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1906278 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1906343 ACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA-GCAAA
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATAC-AA
* * * * *
1906407 GCATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-ATACC
189 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA-ACC
* * *
1906471 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCCCATGAA
253 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
1906536 GGCTTAAGGGACCGTTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAA
318 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
1906601 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTTTCTTTGGCCGG
383 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
1906666 CGTAGTGCCCG---G-TCG-CCC-GCTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCC
448 CGTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * * * * *
1906725 CAGTCTAAGATTGGA-CTGAACAGAGGGTTACGGCAGTACGATTGACAGAACACAGAGGGGGACC
513 CAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * *** * *
1906789 CGACCGATCCTCGTCTTGC-CTTTCTTACCCCTTTGGCCGGCTGAGCACCCGCACGCTTGTTTCG
577 CGACCGATCCCCGGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* *
1906853 TGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
641 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *** * *
1906918 GATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGCATTGGTTCCACATTT
706 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * ** * *
1906983 CTCTTC-ACTGGGGCACCATCACCAGAGCATCGCCGGGGAACCTGATTGTCGGTATTGGGGTTCT
771 TTCTTCGTC-GGGGCACCAT----------T-GTCGGAGAACCTGACCGACGGCATTGGGGTTCT
*
1907047 GACGATCGAGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAACTTGGCCC
824 GGCGATC------G--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-A------CC
* *
1907111 TTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
**
1907176 TTTTACAGGTTTGCTGCCAGTAG-CATTAAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCAA
61 TTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GG
* *
1907240 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAACACAA
124 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* **
1907305 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG
189 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* * ** * *
1907370 CAAAAATTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAG
254 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1907435 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
319 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * * * * **
1907500 ATGTGCCTAAACCCAACGACCACCTTATTGATCCACGGCGTGCACATCCTGTCTCTCTAGCTAGC
384 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
1907565 GTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTC
449 GTAGTGCCCGCCCGCTCG-CC-CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** * * * * *
1907630 CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGTAGGATCGTCAGGACACAGAAGGGGACC
512 CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * * *
1907695 CGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGTTGAGCAACCGTACGCTCATTTCAT
577 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* * * *
1907760 GGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATAAGAAGTTCATTCCCAGTCTAAG
642 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** ** * * *
1907825 ATTTGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTT
707 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * * * * * *
1907890 TCTTTGTCGAGGCACCATCGTC--AGAGCATCACTGGCGGCATTGGGGTTCCGACGATAGGGGGG
772 TCTTCGTCGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTT----C--T--GGCGA
*
1907953 TCGGGGGTGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
829 TCGGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC
*
1908004 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCC-TAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1908068 TTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
1908132 ACAAAATCTTGTACACATCGAGTTTTTAGGTGAATTTTTTTTTGCATGCC-AACAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
**
1908196 ATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
1908261 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGC
256 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
1908326 TTAAGGGACCACTGTATGAATTTATAAGCCATAAAAATGGCATTGGCAGGCGGAAATATGAAGAT
321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* ** *
1908391 GTACCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGCAT
386 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-G
* *
1908456 TA-TGCCCGCCCGCT-----C-G----TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTA
450 TAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * *
1908510 GTCTAAGATCAGACTAGACCAAGGGTTCCGGTAGCAGGATCGGCAGCACGCAGAGAGGGACCCGG
515 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * * * * *
1908575 TCGATCCCTGGCTTACGCATCCCGGCTCTTCTAGCTGGCTGAGCGCCCCGCACACTCGTCTCGTG
580 CCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGC-ACCCGCACGCTCGTTTCGTG
* * * *
1908640 TGTTGACTTAGGCAAAACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAT
643 GGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * ** **
1908705 ATCGGATCGGACCGAGGGTTTGTGGCCAGCAGGAT-C-GGCAGCAC--GCA-GAGGAGAGACCCG
707 ATCGGACCAGACCGAGGG-TTGCGG-CAGCA-CATGCTGG--GCTCGGGCATGTGCTG-GTGCCG
*** ** * * * * * * *
1908765 -ATCGATCCCCGGCTTGCGCATCC--TGCCCCTCTGGCCG--GCTGAGCACCCGCACGCTCGTTC
766 CATTTTTCTTCGTC-GGGGCA-CCATTG----TC-GG-AGAACCT--G-A-CCG-ACG-GCATT-
* **** * * * *** * *
1908825 CGTGGGTTGACTTAGGC-ATACGGAGTTCAT-T-CCCAGTCAATGCATACG-GAGTTCATTCCCA
816 -G-GGGTT--C-T-GGCGAT-CGGGGGGGGTGTGCGCA--C-ATG-AT--GTGCGATGGGT-GCT
* **
1908886 GTCTAAGA
867 G-GT-ACC
** * ** * * ** * * *
1908894 TTGGACCTGACCGAGAGGTTACAGCAGCACATGCGGCTCGGGCATGCGCTGGTGCGCATTTTCTT
1 TTGG-CC---CC-CTA---TCCCTCATCA-A-AC--CTC--G-A-GAAC---T-CACA-C--C-C
* * * * ** * * **** * * * ** *
1908959 TCGTCAGGCAGCATCACCGGAGCA--TCACCGGAGAACCTGACCGGCAG-AATTAGGGT-TCCGA
42 CCTTAAAG-AGCAT---TTGAG-ATTTTACAGG-TTTGCTG-CCAGTAGCCATTAAAGTGTCTGA
* *** **** ***** * * ** *
1909020 CGATCGGGGGGTCCGGGTGGGTGTGCG-CACATGATTGCGATGGGTGCTGTACTT-GACCCTTAT
100 -AAT-GGGGACACTTTTTTCAAATG-GTCACA-AAAT-C--T---TG-TACACTTCGA--GTT-T
* **** *** ** ** * ** *
1909083 ATTCACCCCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTA-AAGAGCATTGA-GATT
151 -TT-AGCTGAAT-TTTTTTGTGC-ATGC-C-A-AA---AAA---AATACAAG-G-A-TCACG--T
* * * * * * ***
1909145 TTA-TAGGTTTGCTGCAGTAGCCACTAAAGT--GTCTGAAACTGGGGACACTTTTTTTCAAATGC
198 CTACCAAGTTTG--G--G--GCCA--AAACTCCTTCTGAAA------A-A-ATTTTAAAAAAT-C
* ** ** * * * *
1909207 TCACAAAAATATTGTACACTTCGAGTTTTTAGCTAAAATTTTTTGTGCATGCCAACAAAAATACA
246 -C-C---GA-ACCGTA-A---AAAG--TTT--C-AAAA------AT-CATG--AA-AAATAGAAA
* ** * ** *** *** * ** ** ** * **
1909272 AGGA-TCTGTC-AACCAAGTTTAGGGC-CAAAAATGCTTTCGAAAAAATTTTAAAAAAATCTTAC
286 ACGAGTC-GTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGT--ATGAAT-TTAC
* ** ** * * *
1909334 -CG-C--AAAAA--GTTTTGAAAAT-CGTGAAAAATAGAAACGAGTCGTCTTGCCATGAAACTTC
346 AAGCCATAAAAATGGCATTG-GCATGC-AGAAATAT-G-AA-GA-T-G---TGCC-T-AAAC-CC
* * ** * * * **** **
1909392 A-CTGA--AGGCTTAAGGA-CCATTGTATGAATTTACAAGACATAAAAATGGCAT-TGGCAC-GC
398 ACCT-ACCA-CCCTATCGATCCA-CG---G--CTTGC--G-CAT-CCCGTCTC-TCTGGC-CGGC
* *** **** * * * * ** * *
1909451 AGAATATGAAGATGTGCCTAAAC-CCACCTAC-CACTCTCTATCGATCCACGCTT-GCGCATCCC
449 -G--TA-G-TG-CCCGCCCGCTCGCC-CCTGCTCA-TTTC-GTCGGT--TGGCTTAG-GCATACG
** * **** ** * * * *** * **
1909513 GTCTCTC-TGGCCGGCATAGTGGCCGCCCGGCCCATCCACTCGTTTCGTCGTG-GTGGATATAGG
502 GAGT-TCAT-TCC--C--AGTCTAAGATCAGACCA--GAC-CG-AGGGT--TGCG-GCA-GCAGG
* ***** *** ****
1909576 CATACGG-AGTTCATTCCCAGTCTAAGATTGGACCGGATGGAAGG-TTACGACAGCAAGATCGAC
553 -AT-CGGCAG--CA--CGCAGAGGGGGACCCGACC-GATCCCCGGCTT--G-C-GC---ATC--C
* ** * * ** * * ** ** * *
1909639 GGTGCATGTAGAGTTGGACATGGTCGCATCCCCGCTTGCGCATCCCGCCCATC-T-GGCCGGCTG
602 CGCCCCTCT-G-GCCGG-C-T-G-AGCA--CCCGC--ACGC-T--CG--TTTCGTGGGTTGACTT
* * * * ** *
1909702 AGCGC--CCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
652 AG-GCATACGGA-GTTC-ATTCCCA-G-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** *
1909765 C--ATCAGACCGAGAGTTGTTGCAGCACATGCT-GGCT-TGGCATGTGCTGGTGCCGCATTTTTC
709 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
1909826 TTCGTCAGGGGCACCATCACCGGAGCCAGTCGCGGAGAACCTGACCGGACGGCATTGGGGTTCCC
774 TTCGTC-GGGGCACCAT----------TGT--CGGAGAACCTGACC-GACGGCATTGGGGTT-CT
1909891 GGCGATC--GGGGGGTGTGCAGCACATGATGTTGCGATGGGTGCTGGTA-C
824 GGCGATCGGGGGGGGTGTGC-GCACATGATG-TGCGATGGGTGCTGGTACC
1909939 TGTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCCTCGAG-ACTCCCACACCCCCTTAAAGA
1 T-TGG--C---------CCCCTATCCCTCATCAAA-CCTCGAGAACT--CACACCCCCTTAAAGA
*
1910003 GCATTTGAGA-TTTACCAGGTTTTGCTGCCAGTAGCC-TT-AAGTGTCTGGAAATGGGGACACCT
51 GCATTTGAGATTTTA-CAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTT
* **
1910065 TTTTCAAATGGTCACAAAATCTTGTACACTATCGAGTTTTTAGCTGACTTTTTTTACGCATGCCA
113 TTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * **
1910130 ACAAAACAT-CAAAGGA-AACGTCTACCAAAGTTTCCGGGCCAAAACTCCTTCCCAAAAAAATTT
177 A-AAAAAATAC-AAGGATCACGTCTACC-AAGTTT-GGGGCCAAAACTCCTT-CTGAAAAAATTT
* * *
1910193 TAAAAAATCCTGAAACCGCAAAAAGTTTCAAAAGTCCATGAAAAATAGAAAACGAGTCGTCTTGC
237 TAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCGTCTTGC
1910258 CATGAAACTTCACGTGAAGGCTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
300 CATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
***
1910323 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TGCCG
364 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CG
* *
1910387 CATCCCGTCTCTCTGGCC-GCGATAGTGCCCG-CCG-TCGCACC-GCTCGTTTCGTC-GTTGGCT
428 CATCCCGTCTCTCTGGCCGGCG-TAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCT
* * * * *
1910447 TAGGCATACCGAGTTCATTCTCAGTCTAAGAT-TGA-CAGA-CGAGGGTTGTGGTAGCAGGATC-
492 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
1910508 GCAGCA--CACAGGGGGACCCGATCGATCCTC-G-TTGCGCATCCTG--CCTCT--CC--C-GAG
557 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * *
1910562 CGTGCCGCACGCTCAGTTTCATGGGTTGACTTATGGCATACGAAGTTCATT--CGGTCTAA-CA-
622 C-ACCCGCACGCTC-GTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
1910623 ACGGAGTTCCATTCCCAGACTAAG-TGTGGACCAGACCGAGGGTCTGCGACAGC-C-TCGGCAGA
684 ACGGAGTT-CATTCCCAGTCTAAGAT-CGGACCAGACCGAGGGT-TGCGGCAGCACAT--GC---
* * * *
1910685 TGGGCTAATCTTGGACATGTGTGTGGATGCCGCATTTTTTCTTCGAT--GGGCACCATCGTTGGA
741 TGGGC---TC--GGGCATGTG-CTGG-TGCCGCA-TTTTTCTTCG-TCGGGGCACCATTGTCGGA
* * *
1910748 GAACCTGGACCGATCGGCATTAGGGTT-TCGACGATCGGGGGGTCGGGGGGTGTGCGCACCTTGA
797 GAACCT-GACCGA-CGGCATTGGGGTTCT-GGCGATC----GG--GGGGGGTGTGCGCA-CATGA
1910812 TGTGCGATGGGTGCTGGTA-C
852 TGTGCGATGGGTGCTGGTACC
1910832 TTGGCCCTTATATTCTCCCCCTATCCCTCAT-AAAGCCTCGAGAACTCACACCCCCTTAAAGAGC
1 TTGG------------CCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
1910896 ATTTGAGATTTTACAGGTTTGTTGCCAGAAGCCATTAAAGTGTTTGAAATGTGGACCACTTTTTT
53 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-CACTTTTTT
* * * * * * * *
1910961 CAAATGCTCCCAAAATCTTGTACCCTACGAGTTTTTAGCTAAAATTTTTTGTGAATGCCAACAAA
117 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* ** * * *
1911026 AATACAAGGATCACGTCTACCATGTTTCAGGCCAAAAATCCATC-CAAAAAATTTT-AAAAATCC
182 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * * *
1911089 C-AAGCCGTAAAAAGTTTTTCGAAAATCAT-CAAAATAGATAATGAGTCGTCTTGCCATGAAACT
247 CGAA-CCGTAAAAAG--TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1911152 TCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCATGCAG
309 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
1911216 AAATATGAAGATGTGCCTAAAACCCATCTACCAACCCTATCGATCCACGGCTTGCGCATCCTGTC
374 AAATATGAAGATGTGCCT-AAACCCACCTACC-ACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
1911281 TCTCTGGTCGACGTATTGCCCGCCCG-T-----CTG-------C--C---T-GC-----C---C-
437 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACG
** * * * * *
1911318 -AG-----T--C--T-TAAGATTGGACCAGACCAAGGGTTGCAGTAGCAGGATC-GCAACACACA
502 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
** *
1911371 GAGGGGGACCCGGTCGATCCCCGGC-TGCGCATCCCTCCCCTCTGGCCGGCTGAGCACCCGCACG
567 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
1911435 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTC
632 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
1911500 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTTGAGCATGTGCTGGT
697 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * *
1911565 GCCACATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACTGGAGAACCTGATCGGCAGCATT
762 GCCGCATTTTTCTTCGTCGGGGCACCAT--T----G--T--C-GGAGAACCTGACCGACGGCATT
* ** * *
1911630 GGGGTTCCGATGATTGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTG
816 GGGGTTCTGGCGA-T---CGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA----
1911695 GCCC
871 --CC
* * *
1911699 TTATATTGCCCCCTATCCCTTCATCAAA-CT-GAGAACTCGACACCCCATTAAAGACCA-TTGAG
1 ---T-TGGCCCCCTATCCC-TCATCAAACCTCGAGAACTC-ACACCCCCTTAAAGAGCATTTGAG
* *
1911761 AATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGT
60 -ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * **
1911826 TCACAAAATCTTGTAC-CTTCGAGTTTTTAGCTGAATTTTATGGTGCATGCCAGTAAAAATACAA
124 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
1911890 GGATCACGT-TACGAAGTTTGGGTCCAAAAC-CCTTCTTGAAAAAATTTTTTTAAAAAATCTCAA
189 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-TGAAAAAA---TTTTAAAAAATCCCGA
* * ** *
1911953 ACCG-CAAAAGTTTTGAAATGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATCGAAACTTCAA
250 ACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTC-A
* * * *
1912017 CGATGAAAG-TTAAGGGAGCATTGGTATGAATTTACAAGCCAT--AAATGGCATTGGCACGTAGA
312 CG-TGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * * *
1912079 AATATGAAGATGTGCCTAAACCCCCCTAACCACCC-ATCGATCCACAGCTTTGCGCGTGCCTGCC
375 AATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGC-TTGCGCAT-CCCGTC
* * * *
1912143 T-TTTGGCAGACGTAGTGCCCGGCCCGC-C-CGCC-GCTC-TTTCGTCGGTTGGCTTAGGCATAC
437 TCTCTGGCCGGCGTAGTGCCC-GCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * *
1912203 GGAGTTCATTCCCAGTCTAAGATC-GACCAGA-CGA-GGTTACAGCGGTA-CAAGATTGGCAGCA
501 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---GCGGCAGCAGGATCGGCAGCA
* * * * *
1912264 CGCACAGGGGGA-CC-ACCCGAT-GCCGCGCATGCGCATCCTGCCCCTCTCTGGTCCGACTTAGA
563 CGCAGAGGGGGACCCGA-CCGATCCCCG-GCTTGCGCATCCCG-CCC-CTCTGG-CCGGC-T-GA
* * *
1912326 GCAACCCGCACGCTTG-TTC-TGGGTTGACTTATGCATAC-GAG-TCATT-CCA-TCTAAG-ATT
621 GC-ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
1912384 CGG-G--C--T--C-G-C----A---G-CC-GA--G-GGG-TG-GGACAGCA-A-GCTGGGCTC-
685 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCACATGCTGGGCTCG
* * ** * *
1912423 GGCATGTGTTGGTG-C-CAATTTTCAGCGCTC-GGGCACCATCGCGAGTCGTCGAGAACCTGAAC
749 GGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCAT----TGTCG--GAGAACCTGACC
* * *
1912485 GACGGCCA-T-GGATTC-GGTGAT-GGGGACCGGGGTGTGCGC-CATGAAGTGCGATGGG-GCTG
807 GACGG-CATTGGGGTTCTGGCGATCGGGG---GGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1912544 GTACTTGCC
868 GTA----CC
1912553 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTA-CCCCTTAAAGAGCATTTGAGA-
1 ---TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGAT
* * *
1912616 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCAGATGGTCA
62 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
1912681 CAAAATCTTGTACACTTCGAGTTCTTT-GCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGG
127 CAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * *
1912745 ATCACGTCTACC-A-------GCCAAAA-TGCCTTCCGAAAAAATTTTAAAAAATTCTGAACCGC
191 ATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
** *
1912801 AAAAAGTTTTGAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
1912866 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACT-TAGAAATATGAAG
320 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAG
* *
1912930 ATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGC
384 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * *
1912995 GTAGTACCAGCCCGCCTGCCCGCCCAACCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTC
449 GTAGT----GCCCGCCCGCTCGCCC--CTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * ** **
1913060 ATTCCC-GATCTAAGATGAGACTGGACCGAGGGTTGCGGTAGCAGGATTGATAGCACATAGAGGG
508 ATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * *
1913124 GGAGCTGGCCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGT
572 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
* * ** * *
1913189 TTCAT-GGTTCGACATAGGCATACGGAGTTCATTCCCAACCTAAGCATACGGAGTTTATTCCTAG
637 TTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
1913253 ACTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCG
701 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * ** *
1913318 TATTTTTCTTCACCGAGTCACCATCACCAGAGCATCATCGGAGAATCC-GACCGGTGGCATTGAG
766 CATTTTTCTTCGTCGGGGCACCAT----------T-GTCGGAGAA-CCTGACCGACGGCATTGGG
* * *
1913382 GTTCCGGTGATCGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
819 GTTCTGGCGATC-----G--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA------
1913447 CC
871 CC
*
1913449 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1913514 TTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1913579 ACAAAATATTGTACACTTCCAGTTTCTAGCTGAATTTTTTTGTGCATGCC-------A-ACAA-G
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * *
1913635 ATCACGTCTACCAAGTTTGGGGCCAAAACACCTT-TCGAAAAAATTTT-AAAAATTCCGAACTGC
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGT
** * *
1913698 AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGC
255 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** * * *
1913763 CTTAAAAGACCATTCTATGAATTTACAAGCCATATAAATGGCATTGGCACGCAGAAATATGAAGA
320 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
1913828 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACG
385 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
1913893 TACTGCCTGCCCGCCCGCCCGCCTGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
450 TA--G--TGCCCGCCCGCTCGCC--CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * *
1913958 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCATGCAGAGGGGG
509 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * ** ** * * * * * *
1914023 ACCCGGCCAATCTTCTACTGGAGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCATTT
574 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* * * *
1914088 CATGGGTTGACTTAGACGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCT
639 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * ** * * *
1914153 AAGATCGGA-CGGATCGAGAGTTTCGATAGCACATGCTTGGCTCGAGCATCTGCTGGTTGCCCGC
704 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG-TG-CCGC
* * * *
1914217 ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCAGAGAACCTAACC-AGCGGCATTGGGG
767 ATTTTTCTTCGTCGGGGCACCAT----------T-GTCGGAGAACCTGACCGA-CGGCATTGGGG
***
1914281 TTCCAACGATCGGGGGGCTAGGGGGGTTGTGCGCACATGATGTGGCGATGGGTGCCTGGTACTTG
820 TTCTGGCGATC----GG---GGGGGG-TGTGCGCACATGATGT-GCGATGGGTG-CTGGTA----
1914346 GCCC
871 --CC
1914350 TATTAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAAGCA-TTGA
1 ------TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGA
* *
1914413 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAAATGGGGACGCTTTTTTTAAATG
59 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATG
*
1914478 GTCACAAAATCTTGTACACTTCGAGTTTCTAGCTG-A-TTTTTTGATGCATGCCAAAAAAAATAC
123 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAAAAAAAATAC
* *
1914541 AAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCTC-AG
187 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGA-
* * * * * *
1914604 GCCGCAAAGAGTTTTCCAAAATCGTGAAAAATAAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
250 ACCGTAAAAAG-TTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
1914669 GTGAAGGCATAAGGGACCATTGTATGGAATTTACAAGCCATAAAAATGGAATTGGCATGCACAAA
313 GTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
** * *
1914734 TATGAAGATAAGCCTAAACCCACCTACCACCCTATCGATCGAC-GTTTGCGCATCCCGTCTCTCT
377 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * * *
1914798 TGTCGGCGTACTGCCCGCCCGCCCGCCTGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGAAC
442 GGCCGGCGTAGTGCCCGCCCGCTCGCC--CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * *
1914863 TTCATT-CCAGTCTAAGATTGGACC-GACTGAGGGTTGCGGCAGCAAGATTGGCAGCACGTAGAG
505 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * ** * *
1914926 GGGGTCCGGGTCGATCCCCGGCTTGCGAATCCC-CCCCTCTGGCCGGCTGAGCACCCGAACGCTC
570 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
* *
1914990 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATT--C-
635 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
1915052 G-----G-T----------------TT-CGGCAGCACATGCTGGGCTCGGGCATCTGCTGGTGTC
700 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
1915094 ACATTTTTCTTCATCGGGGCACCATCGACGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGG
765 GCATTTTTCTTCGTCGGGGCACCAT----------T-GTCGGAGAACCTGACCGA-CGGCATTGG
*
1915158 GGTTCTGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGAACTTGG
818 GGTTCTGGCGATC----GGG---GGGGGTGTGCGCACATGATGTGCGATGGG---T-G--C-TGG
**
1915223 CCCTTATA
869 ----TACC
* *
1915231 TTGGCCCCCTATCCCTCATCATACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
1915296 CAGGTTTGCTGCCAGTAGCCCATTAAAGTGT-TGAAATGGGGATAC-TTTTTC-AATGGTCAAAA
66 CAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
1915358 AATCTTGTACACTTCGAGTTTTCAGGTGAA-TTTTTTGTGCATGCC-AAAAAAATACAAGGATCA
130 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
1915421 CATCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCATAAAAA
195 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** * * * *
1915485 GTTTTGAAAATCGT-AAAAATAGAAAACGAGTCCGTCTTGTCGTGAAACTTCGCGTGAAGGCTTA
260 GTTTCAAAAATCATGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * *
1915549 AGAGACAATTGTATGAATTTACAAGACATAAAAAATGGCATTGGCATGCAGATATATGAAAGATG
324 AGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATG-AAGATG
* * * *
1915614 TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTG
387 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * ** * *
1915679 GTGCCCGCCCACCCGCCCTCCCACTCGTTTCGTCGGTCGGCTTAGGC--ACGGAGTTCATTCCCA
452 GTGCCCGCCCGCTCG-CC-CCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * *
1915742 -TCTAAGATC-GATCCTGGA-TGAGGGTTATGGCA-CAAGGATCGGCAGCATGCAGA-TGGGACC
515 GTCTAAGATCAGA-CC-AGACCGAGGGTTGCGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACC
* * * * *
1915802 CG-TCGATCCTC-GCTTGCGCGTCCCGCCCCTCT-GCC-GCTGAG--CCCGC-TGCTCATTTCGT
577 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
*
1915860 -GG-TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT--GGAGTTTCA-T-CCA-TC---
642 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TTCATTCCCAGTCTAA
* *
1915915 CATCGAGAACC-GA-CG-GGGTTGCGACAGCAC-T-CT-GG-TCGGGCATGTGCTGGTGCCTGCA
706 GATCG-G-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCA
* * *
1915973 -TTTTCTTCGTC-GGGCACCATCGCGGAGCATCGCGGAGAGAACCTGA-CGATGGCATTGGGATT
768 TTTTTCTTCGTCGGGGCACCAT-----TG--T--C-G-GAGAACCTGACCGACGGCATTGGGGTT
* * *
1916035 -TCGCGATCGGGGGGCCAGGGGTGTGTGGCACATGATGTG-GAAT-AGTGCTGGTA-C
822 CTGGCGATC--GGGG---GGGGTGTG-CGCACATGATGTGCG-ATGGGTGCTGGTACC
* * *
1916089 TTGCCCTTATTTGCCCCAAT-CCTCATCAAACCTCGAGAACTCACACACCCCTTAAAAAGCAATT
1 TTG-GC-------CCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGC-ATT
*
1916153 TGAGATTTTTA-AGGTTTGCTGCCGGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
56 TGAGA-TTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
1916217 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
119 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
1916282 TACAAGGATCATGTCTACTAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
184 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
* **
1916347 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
249 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1916412 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCATTGGCACGCAGAAATA
314 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
1916477 TGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
379 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * ** *
1916542 CCGGCGTAGTGCCCACGCGC-CAG-CTC-GCTCGTTTCATTGGTTCACTTAGGCATACGGATTTC
444 CCGGCGTAGTGCCCGCCCGCTC-GCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * **
1916604 ATTCCCAGTGTAAGATCAGATCAGACCAAGGGTTGGGGCTA-CAGGATCTACAGCACGCAGAGGG
508 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC-AGCAGGATCGGCAGCACGCAGAGGG
* * * ** * * * * *
1916668 GAACCAGATCGATCCCTAGCTTGCACAT-CCGACCCCTCTGGCCGGCTAAGCGCCCGCACGTTTG
572 GGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
*
1916732 TTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A----C--
636 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *
1916783 -C------C-G----GACCGAGGGTTGCGGCAGCACATGCTGGCCTTGGGCATGTGCTGGTGCCG
701 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *** * *
1916836 CATTTTTCTTCGAT-GGCGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
766 CATTTTTCTTCG-TCGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGAT
* *
1916900 CATGGGGCCGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTA-C
830 C----GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACC
*
1916948 TTGGCCCTTTTATTGGCCCCTAATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
1 TTGG--C---------CCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * * *
1917013 TTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAATTTTTGAAATGGGGACACTTTTTTCA
54 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
1917078 ACTGGTCCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
119 AATGGT-CACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * * * *
1917143 AATACAAGGATCACATCTA-AAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCT
182 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * *
1917207 CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCA
247 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
1917272 CGTGAAGGCTTAAGGGACCATTTTATGAATTTAGAAGCCATAAAAATGGCATTGGTATGCAGAAA
312 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* ** *
1917337 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTTTCCCATCTCTCT
377 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * ** * * * *
1917402 GGCCGGTATACTGCGTGCCCAC-C-CGCCTGCTCATTTAGTCGGTTCGCTTAGGCATACGGAGTT
442 GGCCGGCGTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
1917465 CATTCCCAGTCTAAGATCAGAACAGACTGAGGGTTGAGGCAGCAAGATCGGCAGAATGCAGAGGG
507 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
1917530 GGACCCGACCAATCCCCGACTTGCACATCCCGCCCCTCTGGCCAGTTGAGCACCCGCACGCTCGT
572 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
*
1917595 TTCGT--G--CA-TT---C--AC----TT-ATT--CA---T-A-C--A--GAGTTCATTCCCAGT
637 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
1917634 CTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTCG
702 CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CG
* * * ** * * **
1917699 TCATTTTTCCTTCG-CGTGGTAACATCATCGGAGAACCTGACCG-TGGCATTGAGGTTCCAGCGA
766 -CATTTTT-CTTCGTCGGGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGA
*
1917762 TCGGGGGGGCTGGGGGGTGTGGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
829 TC-----GG--GGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTA------CC
* **
1917820 TTATATTGGCCCCCTATCCCTTATCAAAACCTCCGAGAACCTCACCACCCATTTAAAGAGCCATT
1 -----TTGGCCCCCTATCCCTCATC-AAACCT-CGAGAA-CTCA-CACCCCCTTAAAGAG-CATT
* * * *
1917885 TGTGATTTTTACAGGTTTTCTGGCCAGTAGCCATT-AAGTGT-TCAGGATGGGGACACTTTTTTC
56 TGAGA-TTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTC
* * ** * *
1917948 AAAATTGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGGACTTGGTTTGTGCATGCC-CAC
118 -AAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAAAA
* *
1918012 AAAATACAAGGATCATGTCTACCAAGTTTGGTG-C----CT-C--C-G-AAAAATTTTAAAAAAT
180 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * * * * *
1918067 CCTCGAACTG-CAAAAGTTT-AAAAA-CCTGAAAAATAGCAAACGAGTTGTCTTGCCATGGAACT
245 CC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1918129 TCACGTGAAGGCCTTAAAGGACCATTGTATGAATTTGACAAGCCATAAAAATGGCATTAGTATGC
309 TCACGTGAAGG-CTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGC
* *
1918194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCTTCCCGTC
372 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * ** ** * * * * *
1918259 TCTCTGGCCGATGTACTGCCTACCAAC-C-CGCTTGCTCATTTCATCGGTTCGCTTAGGTATACG
437 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACG
** * * ** * *
1918322 GAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAATAGGATCGGTAGCACGTA
502 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * *
1918387 GAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACT
567 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
1918452 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A---
632 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
1918506 -C---C------CGGACC--A---AGGGTTGC-ACAGCATATGCTAGGCTTGGGCATGTGCTGGT
697 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
1918555 GCCGCATTTTTCTTCGTCGGTGCACCATCGCCAGAGCATCGCTAGAGAACCTGACCGGCGGCATT
762 GCCGCATTTTTCTTCGTCGGGGCACCAT------TG--TCG---GAGAACCTGACCGACGGCATT
* * * **
1918620 GTGATTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
816 GGGGTTCTGGCGATC------G--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG----
1918685 TGACCC
869 T-A-CC
*
1918691 TTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
1 -----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1918755 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAAT-TTTGAAATGGGGACACTTTTTTCAAATGGTC
61 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1918819 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGG
126 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * * ** * *
1918884 ATCACATCTA-AAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTCAAAAAAATCTCAAACCGTA
191 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA
* *
1918948 AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
256 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
1919013 TTAAGGGACCATTGTATGAATTTAGAAGCGATAAAAATGGCATTGGTACGCAGAAATATGAAGAT
321 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * ** * **
1919078 GTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGTTTCCCGTCTCTCTAGCCGGTAT
386 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
1919143 ACTGCCTGCCAC-CT-G--CCTGCTCATTTAGTCGGTTCGCTTAGGCATACGGAGTTCATT-CCA
451 AGTGCCCGCC-CGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * *
1919203 GTCTAAGAT-TGTA-CAGACTGA-GGTTAG-GG--GGAGGATCGACAGCACGTAGAGGAGCCGAC
515 GTCTAAGATCAG-ACCAGACCGAGGGTT-GCGGCAGCAGGATCGGCAGCACGCAGAGG-G-GGAC
* * *
1919262 CCGA-CGATCCCCGACTTGGCACATCCTCG-CCCTATGG-C-G-TGAG--CCCGCACG--C---T
576 CCGACCGATCCCCGGCTT-GCGCATCC-CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* * *
1919315 --T---TT--C-TAGGCATA--G-GTTCATTTCCA-TC---GCATA-AGAGTTC-TT-TCAGTCT
639 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
1919362 AAGATC-GACCGGA-CGAGGGTTACGGC-GCACAAGCTGGGCT--AGCAAGTGCTGCTGCCGCA-
704 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
1919421 TTTTCTTCATTGGGGCACCAATGAGCATCTCGGAGAACCTGACTCGTACGGCATTGGGGTTC-GG
769 TTTTCTTCGTCGGGGCACC-AT-----TGTCGGAGAACCTGAC-CG-ACGGCATTGGGGTTCTGG
* * **
1919485 CGATCGGGGGCGGGGTGTGCGCACATGATGTGCGAGGATGCCCAGTACTTGGCCCTTATA
826 CGATC-GGGG-GGGGTGTGCGCACATGATGTGC---GATG---GGTGC-TGG----TACC
*
1919545 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-ACATCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
1919609 CAGGTTTGCTACCAGTAGCCCACTAAAGTATTTGGAATGGGGACACTTTTTTCAAATGGTCACAA
66 CAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* ** *
1919674 AATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTCAGCATGCCAGAAAAAATACAAGGATCA
130 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * *
1919739 CGTCTACCAAGTTTGGGGCCAAAAATCCATTC-AAAAAAATTTTAAAAAATCCTGAATCGTAAAA
195 CGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* ** * * * * *
1919803 TGTTTCGTAAATCATGAAAAATAGAAATCGAGTCATCTTGCTATGAAACTTAACATGAAGGCTTA
259 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * *** *
1919868 AAGGACCATTGTATGAATTTACAAACCATAAAAATGGCCTTGGCACATAGAAATATGAAGATGTA
324 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * * *
1919933 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCAGGCTGGTGTAGT
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * ** * *
1919998 GCCCGCCTGCCCG-CCC-GCTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTTCCAATCT
454 GCCCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1920061 AAGATC
519 AAGATC
1920067 GAACCGAACT
Statistics
Matches: 20870, Mismatches: 3069, Indels: 3296
0.77 0.11 0.12
Matches are distributed among these distances:
840 28 0.00
841 44 0.00
842 65 0.00
843 52 0.00
844 13 0.00
845 18 0.00
846 27 0.00
847 19 0.00
848 31 0.00
849 109 0.01
850 78 0.00
851 143 0.01
852 345 0.02
853 161 0.01
854 59 0.00
855 39 0.00
856 61 0.00
857 93 0.00
858 94 0.00
859 150 0.01
860 196 0.01
861 315 0.02
862 970 0.05
863 222 0.01
864 155 0.01
865 433 0.02
866 440 0.02
867 115 0.01
868 92 0.00
869 207 0.01
870 333 0.02
871 487 0.02
872 852 0.04
873 410 0.02
874 158 0.01
875 216 0.01
876 231 0.01
877 244 0.01
878 368 0.02
879 227 0.01
880 862 0.04
881 99 0.00
882 24 0.00
883 66 0.00
884 153 0.01
885 395 0.02
886 74 0.00
887 68 0.00
888 25 0.00
889 292 0.01
890 567 0.03
891 530 0.03
892 880 0.04
893 205 0.01
894 86 0.00
895 92 0.00
896 788 0.04
897 848 0.04
898 706 0.03
899 341 0.02
900 286 0.01
901 227 0.01
902 598 0.03
903 170 0.01
904 562 0.03
905 30 0.00
906 368 0.02
907 64 0.00
908 28 0.00
909 61 0.00
910 56 0.00
911 25 0.00
912 28 0.00
913 90 0.00
914 178 0.01
915 180 0.01
916 21 0.00
917 154 0.01
918 3 0.00
919 6 0.00
920 11 0.00
921 14 0.00
922 4 0.00
923 9 0.00
924 7 0.00
925 7 0.00
926 4 0.00
927 10 0.00
928 6 0.00
929 710 0.03
930 10 0.00
931 1 0.00
932 4 0.00
933 5 0.00
934 5 0.00
935 6 0.00
936 1 0.00
937 2 0.00
938 7 0.00
939 12 0.00
940 5 0.00
941 13 0.00
942 6 0.00
943 7 0.00
944 14 0.00
945 7 0.00
946 7 0.00
947 19 0.00
948 4 0.00
949 13 0.00
950 6 0.00
951 5 0.00
952 13 0.00
953 3 0.00
954 9 0.00
955 10 0.00
956 10 0.00
957 8 0.00
958 4 0.00
959 7 0.00
960 2 0.00
961 5 0.00
962 9 0.00
963 5 0.00
964 11 0.00
965 5 0.00
966 14 0.00
967 11 0.00
968 7 0.00
969 2 0.00
970 7 0.00
971 11 0.00
972 26 0.00
973 17 0.00
974 22 0.00
975 16 0.00
976 11 0.00
977 15 0.00
978 10 0.00
979 12 0.00
980 29 0.00
981 26 0.00
982 8 0.00
983 7 0.00
984 6 0.00
985 4 0.00
986 8 0.00
987 11 0.00
988 16 0.00
989 4 0.00
990 3 0.00
991 7 0.00
992 7 0.00
993 3 0.00
994 3 0.00
995 3 0.00
996 15 0.00
997 14 0.00
998 6 0.00
999 7 0.00
1001 8 0.00
1002 7 0.00
1003 9 0.00
1004 10 0.00
1005 2 0.00
1006 7 0.00
1007 6 0.00
1008 7 0.00
1009 6 0.00
1010 9 0.00
1011 10 0.00
1012 2 0.00
1013 9 0.00
1014 10 0.00
1015 6 0.00
1016 17 0.00
1017 207 0.01
1018 26 0.00
1019 26 0.00
1020 42 0.00
1021 59 0.00
1022 12 0.00
1023 9 0.00
1024 144 0.01
1025 150 0.01
1026 109 0.01
1027 73 0.00
1028 56 0.00
1029 64 0.00
1030 88 0.00
1031 105 0.01
1032 109 0.01
1033 78 0.00
1034 70 0.00
1035 61 0.00
1036 71 0.00
1037 47 0.00
1038 75 0.00
1039 51 0.00
1040 519 0.02
1041 111 0.01
1042 77 0.00
1043 51 0.00
1044 36 0.00
1045 19 0.00
1046 42 0.00
1047 53 0.00
1048 570 0.03
1049 213 0.01
1050 27 0.00
1051 23 0.00
1052 36 0.00
1053 60 0.00
1054 55 0.00
1055 59 0.00
1056 74 0.00
1057 28 0.00
1058 63 0.00
1059 27 0.00
1060 32 0.00
1061 103 0.00
1062 208 0.01
1063 60 0.00
1064 27 0.00
1065 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCTCGCCCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACC
Found at i:1898755 original size:26 final size:26
Alignment explanation
Indices: 1898719--1898771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1898709 GTTGACTTAG
1898719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1898745 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1898771 G
1 G
1898772 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1899766 original size:26 final size:26
Alignment explanation
Indices: 1899736--1899788 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1899726 GTTAACTTAG
1899736 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1899762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1899788 G
1 G
1899789 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1900637 original size:26 final size:26
Alignment explanation
Indices: 1900608--1900660 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1900598 GTTGACTTAG
1900608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1900634 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1900660 G
1 G
1900661 AACAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1902440 original size:26 final size:26
Alignment explanation
Indices: 1902410--1902488 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
1902400 GTTGACTTAG
*
1902410 GCATACGAAATTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
1902436 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
1902462 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AATTCATTCCCAGTCTAA
1902488 G
1 G
1902489 ATCGGACCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:1903357 original size:26 final size:26
Alignment explanation
Indices: 1903327--1903379 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1903317 GTTGACTTAG
1903327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1903353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1903379 G
1 G
1903380 ATCGGATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1904249 original size:26 final size:26
Alignment explanation
Indices: 1904212--1904264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1904202 ATTGACTTAG
*
1904212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1904238 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1904264 G
1 G
1904265 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1905107 original size:26 final size:26
Alignment explanation
Indices: 1905078--1905130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1905068 GTTAACTCCG
* * *
1905078 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1905104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1905130 G
1 G
1905131 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1906009 original size:26 final size:26
Alignment explanation
Indices: 1905973--1906022 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1905963 GACTAGGGCA
*
1905973 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCACTCCCAGTCTAAGCT
*
1905999 TACGGAGTTCACTGCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
1906023 ATCGAACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCT
Found at i:1907802 original size:26 final size:26
Alignment explanation
Indices: 1907772--1907824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1907762 GTTGACTTAG
* *
1907772 GCATACGAAGTTCATTCCCATTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
1907798 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
1907824 G
1 G
1907825 ATTTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:1908908 original size:188 final size:188
Alignment explanation
Indices: 1908490--1908913 Score: 518
Period size: 188 Copynumber: 2.2 Consensus size: 188
1908480 GTTGGCTTAG
* * * * *
1908490 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGACCAAGGG-TTCCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GACCGAGGGTTTCCGGCAGCAGGATCGGC
* * * * * *
1908554 AGCACGCAGAGAGGGACCCGGTCGATCCCTGGCTTACGCATCCCGGCTCTTCTAGCTGGCTGAGC
65 AGCACGCAGAGAGAGACCCGATCGATCCCCGGCTTACGCATCCCGGCCCCTCTAGCCGGCTGAGC
* *
1908619 GCCCCGCACACTCGTCTCGTGTGTTGACTTAGGCAAAACGGAGTTCATTCCCAGTCTAA
130 GACCCGCACACTCGTCTCGTGGGTTGACTTAGGCAAAACGGAGTTCATTCCCAGTCTAA
* * * **
1908678 GCATATGGAGTTCATTCCCAGTCTAATATCGGATCGGACCGAGGGTTTGTGGCCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGACCGAGGGTTTCCGG-CAGCAGGATCGG
* * *
1908743 CAGCACGCAGAGGAGAGACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGA
64 CAGCACGCAGA-GAGAGACCCGATCGATCCCCGGCTTACGCATCCCGGCCCCTCTAGCCGGCTGA
* *
1908807 GC-ACCCGCACGCTCGT-TCCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTC-AA
128 GCGACCCGCACACTCGTCT-CGTGGGTTGACTTAGGCAAAACGGAGTTCATTCCCAGTCTAA
*
1908865 TGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCTGACCGAGAGGTT
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGACCGAG-GGTT
1908914 ACAGCAGCAC
Statistics
Matches: 201, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
187 2 0.01
188 95 0.47
189 37 0.18
190 40 0.20
191 27 0.13
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (188 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGACCGAGGGTTTCCGGCAGCAGGATCGGCA
GCACGCAGAGAGAGACCCGATCGATCCCCGGCTTACGCATCCCGGCCCCTCTAGCCGGCTGAGCG
ACCCGCACACTCGTCTCGTGGGTTGACTTAGGCAAAACGGAGTTCATTCCCAGTCTAA
Found at i:1914136 original size:26 final size:26
Alignment explanation
Indices: 1914106--1914155 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1914096 GACTTAGACG
*
1914106 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCAATCCCAGTCTAAGCA
1914132 TACGGAGTTCAATCCCAGTCTAAG
1 TACGGAGTTCAATCCCAGTCTAAG
1914156 ATCGGACGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCAATCCCAGTCTAAGCA
Found at i:1921052 original size:26 final size:26
Alignment explanation
Indices: 1921022--1921074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1921012 GTTGGCTTAG
*
1921022 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1921048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1921074 G
1 G
1921075 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1922547 original size:26 final size:26
Alignment explanation
Indices: 1922517--1922566 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1922507 GACTTAGTCC
1922517 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
1922543 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1922567 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:1923599 original size:898 final size:890
Alignment explanation
Indices: 1921783--1924094 Score: 3129
Period size: 898 Copynumber: 2.6 Consensus size: 890
1921773 TGACCGGTGA
* * *
1921783 CATTAAGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGG
1 CATT-AGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
1921848 TACTTGGCCTTTATATTGGCCCCCTATCCCTCCATC-AACCTTGAGAACTCACACCCCCTTAAAG
64 TACTTGGCCCTTATATTGGCCCCTTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1921912 AGCATTTGAGAATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTT
128 AGCATTTGAG-ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1921977 TTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
192 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAA
* * * * **
1922041 TAAAAATACAAGGATCATGTCTACGAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAAA
257 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * ** * * *
1922106 ATCTCAAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCTATGAAAC
322 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAAC
*
1922171 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
387 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * * * **
1922236 AAAATATGAAGTTGTGCCTAAACCCACCTACAATCCTATCGGTCCACGGCTTGATCATCCCGTCT
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
* * *
1922301 CTCTGGCCGGCGTAATGCCTGCTCGCCCGCCCGTTCGTTTCGTCAGTTGGCTCAGGCATACGGAG
517 CTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTCAGGCATACGGAG
* * ** * * *
1922366 TTCATCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGTAGGATCAACAGCACGTAGTGG
582 TTCATCCCAGTCTAAGATTAGACCGGACCAAGGGTTACGGTAGCAGGATCAACAGCACGCAGGGG
* * *
1922431 GGGACCCGATCAATCCCCGGCTTGTGCATCCCGCCCCTTTGGCCGGTTGAGCGCCTGCACTCTCG
647 GGGACCCGATCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCG
* * *
1922496 TTTCATGTGTTGACTTAGTCCTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
712 TTTAATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * *
1922561 TCTAAGATCGGATCGAATCGAGGGTTGCGACAGCACATGCTAGGTGCGGGCATGTGCTGGTGCTG
777 TCTAAGATCGGATCGAACCAAGGGTTGCGACAGCACATGCTAGGCACGAGCATGTGCTGGTGCCG
* *
1922626 CATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGG
842 CATTTCTCTTCGTCGGGG--CCATC-T----G-ATCACCGAAGAACCTGAACGACGG
* * *
1922683 CATTAGGTTCCAGCGATCG-GGGTAGCCGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGT
1 CATTAGGTTCCGGCGATCGAGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
1922747 ACTTGGCCCATATATTGGCCCCTTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
1922812 CGTTTGAGATTTTCCAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTGAAATGGGAACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** * * *
1922877 TGAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAACTGAATTTTTTTTTTGCATGCCAACAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAA
* * **
1922942 AATTACAAGGCTCACGTCTACCAAGTTTGGGGCCAAATA-TCCTTCCAAAAAAATTAAAAAAAAT
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCAAAAAAATTTTAAAAAAT
* ** *
1923006 CTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTT
324 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTT
* *
1923071 CACGTGAAGGCTTAAGGGAACATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
1923136 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCT
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
* * * * *
1923201 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTGGTTTAGGCAT
519 CTGGCCGGCGTAAT----GCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTCAGGCAT
* ****
1923266 ACGGAGTTCATTCCCAGTCTAAG-TTCAGACCGGATCAAGGGTTACGGTAGCAGGATCGGTGGCA
576 ACGGAGTTCA-TCCCAGTCTAAGATT-AGACCGGACCAAGGGTTACGGTAGCAGGATCAACAGCA
* * * * * *
1923330 TGCAGAGGGGGGGCCC-AGTCGATCCCCGGCTTGTGTATCCGGCCCCTCTGGCCGGCTGATCGCC
639 CGCAG-GGGGGGACCCGA-TCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
1923394 TGCACGCTCGTTTAATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATATGGAGT
702 TGCACGCTCGTTTAATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
1923459 TCATTCCCAGTCTAAGATCGGATC-AGACCAAGGGTTGCGGCAGCACATGCTGGGCACGAGCATG
767 TCATTCCCAGTCTAAGATCGGATCGA-ACCAAGGGTTGCGACAGCACATGCTAGGCACGAGCATG
* * *
1923523 TGCTGGTGCCGTATTTTTCTTCGTCGGGG-CAT-T-ATCGCCGTAA-AACCTGAACGACGG
831 TGCTGGTGCCGCATTTCTCTTCGTCGGGGCCATCTGATCACCG-AAGAACCTGAACGACGG
* * *
1923580 CATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
1 CATT-AGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
1923645 ACTTGGCCCTTATATTGGCCCCTTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
1923710 TATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
130 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
1923775 CAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTACAAGCCAACAA
195 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAA
* *
1923839 AAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAAAAAATC
260 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* * * * *
1923904 CCGAATCGTAAAAAGTTTCAAAAATCGTTAAAAAAAGAAAA-TGAGTCGTCTTGCCATAAAACTT
325 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACT-AGTCGTCTTGCCATGAAACTT
* *
1923968 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCAGA
389 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
1924033 AATATGAAGATGTGCTTAAACCCACCTACCACCCCATCGATCAATGACTTGCGCATCCCGTC
454 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
1924095 CGCCCGCCCG
Statistics
Matches: 1239, Mismatches: 151, Indels: 47
0.86 0.11 0.03
Matches are distributed among these distances:
896 2 0.00
897 362 0.29
898 566 0.46
899 20 0.02
900 4 0.00
902 4 0.00
903 1 0.00
904 1 0.00
905 4 0.00
906 42 0.03
907 45 0.04
908 188 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
CATTAGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTCAGGCATACGGAGTTCA
TCCCAGTCTAAGATTAGACCGGACCAAGGGTTACGGTAGCAGGATCAACAGCACGCAGGGGGGGA
CCCGATCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTA
ATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGATCGAACCAAGGGTTGCGACAGCACATGCTAGGCACGAGCATGTGCTGGTGCCGCATT
TCTCTTCGTCGGGGCCATCTGATCACCGAAGAACCTGAACGACGG
Found at i:1924737 original size:26 final size:26
Alignment explanation
Indices: 1924690--1924746 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
1924680 CTAAGATCGG
* *
1924690 ATCAGACCGAGGGTTACGGCAGCAGA
1 ATCAGACCAAGGGTTACAGCAGCAGA
*
1924716 ATCAGACCAAGGGTT-CAAGCAGCAGG
1 ATCAGACCAAGGGTTAC-AGCAGCAGA
1924742 ATCAG
1 ATCAG
1924747 TAGCAATGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.33, C:0.23, G:0.32, T:0.12
Consensus pattern (26 bp):
ATCAGACCAAGGGTTACAGCAGCAGA
Found at i:1926845 original size:26 final size:26
Alignment explanation
Indices: 1926816--1926868 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1926806 CCGGTCTGAT
1926816 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
1926842 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
1926868 C
1 C
1926869 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:1927733 original size:26 final size:26
Alignment explanation
Indices: 1927704--1927759 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
1927694 CCGGTCTGAT
1927704 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
1927730 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1927756 CTTA
1 CTTA
1927760 ATTCAAGCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1929518 original size:26 final size:26
Alignment explanation
Indices: 1929482--1929534 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1929472 CCAGTCAAAT
*
1929482 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
1929508 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
1929534 C
1 C
1929535 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTTCGTATG
Found at i:1930415 original size:26 final size:26
Alignment explanation
Indices: 1930386--1930438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1930376 CTGGTCCGAT
*
1930386 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1930412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1930438 C
1 C
1930439 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1931317 original size:26 final size:26
Alignment explanation
Indices: 1931281--1931359 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
1931271 CTGGTCTGAT
1931281 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1931307 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
1931333 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1931359 C
1 C
1931360 CTAAGTCAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:1932219 original size:26 final size:26
Alignment explanation
Indices: 1932190--1932242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1932180 CTGATCCGAT
*
1932190 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1932216 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1932242 C
1 C
1932243 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1933110 original size:26 final size:26
Alignment explanation
Indices: 1933081--1933159 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
1933071 CTGGTCCGAT
* *
1933081 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
1933107 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
1933133 CTTAGACTAGGAATGAATTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
1933159 C
1 C
1933160 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:1934063 original size:26 final size:26
Alignment explanation
Indices: 1934011--1934063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1934001 CCGATCCGAT
* * *
1934011 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
1934037 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
1934063 C
1 C
1934064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:1934949 original size:26 final size:26
Alignment explanation
Indices: 1934910--1934962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1934900 CTGGTCTGTT
1934910 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
1934936 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
1934962 C
1 C
1934963 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:1935819 original size:26 final size:26
Alignment explanation
Indices: 1935783--1935835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1935773 CCAGTCTGAT
1935783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1935809 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1935835 C
1 C
1935836 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.