Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 127 of 129
Found at i:22416653 original size:3 final size:3
Alignment explanation
Indices: 22416647--22416693 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
22416637 TTTTTTAAAA
* ** *
22416647 ATT ATT ATT ATT ATT ATT AAT ATT ATT ATT AAA ATT ATT AAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
22416694 AGTGAAATGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:22417037 original size:110 final size:110
Alignment explanation
Indices: 22416839--22417051 Score: 252
Period size: 110 Copynumber: 1.9 Consensus size: 110
22416829 AACATAAAAC
* * * * * * *
22416839 GATTGGGATGACACCGCAAGTCAAAAAATAATGGATTGATCGAGATAATATCGTGAATCGAATTT
1 GATTGGGATAACACCACAAGTCAAAAAATAAAGAATCGATCGAGATAACATCGCGAATCGAATTT
22416904 ATACCCAGGGGTCTTACAAATCATGCCCGGAGGTCTTATAAAATT
66 ATACCCAGGGGTCTTACAAATCATGCCCGGAGGTCTTATAAAATT
** *
22416949 GATTGGGATAACACCACAAGTTGAAAAATAAAGAATCGATC-AGGATAACATCGCGAATTGAATT
1 GATTGGGATAACACCACAAGTCAAAAAATAAAGAATCGATCGA-GATAACATCGCGAATCGAATT
* * * *
22417013 TAT-GCCTGGAGGTCTTA-AACATCATGTCTGGAGGTCTTA
65 TATACCCAGG-GGTCTTACAA-ATCATGCCCGGAGGTCTTA
22417052 CAGAATCATA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
109 7 0.08
110 79 0.92
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (110 bp):
GATTGGGATAACACCACAAGTCAAAAAATAAAGAATCGATCGAGATAACATCGCGAATCGAATTT
ATACCCAGGGGTCTTACAAATCATGCCCGGAGGTCTTATAAAATT
Found at i:22417113 original size:133 final size:133
Alignment explanation
Indices: 22416913--22417191 Score: 359
Period size: 133 Copynumber: 2.1 Consensus size: 133
22416903 TATACCCAGG
* * * * * *
22416913 GGTCTTACA-AATCATGCCCGGAGGTCTTATAAAATTGATTGGGATAACACCACAAGTTGAAAAA
1 GGTCTTACAGAATCATACCCAGAGGTCTTACAAAATCGACTGAGATAACACCACAAGTTGAAAAA
* ** * *
22416977 TAAAGAATCGATCAGG-ATAACATCGCGAATTGAATTTATGCCTGGAGGTCTTA-AACATCATGT
66 TAAAGAATCGATC-GGAATAACACCGCGAATCAAATTTATGCCTAGAGGTCTTAGAA-ATCATGC
*
22417040 CTGGA
129 CCGGA
* *
22417045 GGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATAACATCACAAG-TGAAAAG
1 GGTCTTACAGAATCATACCCAGAGGTCTTACAAAATCGACTGAGATAACACCACAAGTTGAAAA-
* *
22417109 ATAAAGAATTGATCGGAATAACACCGCGAATCAAATTTGTGCCTAGAGGTCTTAGAAATCATGCC
65 ATAAAGAATCGATCGGAATAACACCGCGAATCAAATTTATGCCTAGAGGTCTTAGAAATCATGCC
22417174 CGGA
130 CGGA
22417178 GGTCTTACAGAATC
1 GGTCTTACAGAATC
22417192 GATTGGGATA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
132 17 0.13
133 108 0.85
134 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (133 bp):
GGTCTTACAGAATCATACCCAGAGGTCTTACAAAATCGACTGAGATAACACCACAAGTTGAAAAA
TAAAGAATCGATCGGAATAACACCGCGAATCAAATTTATGCCTAGAGGTCTTAGAAATCATGCCC
GGA
Found at i:22417202 original size:110 final size:110
Alignment explanation
Indices: 22417043--22417301 Score: 322
Period size: 110 Copynumber: 2.3 Consensus size: 110
22417033 ATCATGTCTG
* * * * *
22417043 GAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATAACATCACAAGTGAAAA
1 GAGGTCTTA-AAAATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACACCACAAGTCAAAA
* * *
22417108 GATAAAGAATTGATCGGAATAACACCGCGAATCAAATTTGTGC-CT
65 AATAAAGAATCGATCGGAATAACACCGCGAATCAAATTTATGCTCT
* * * *
22417153 AGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGTCAAAA
1 -GAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACACCACAAGTCAAAA
* * * **
22417218 AATAATGAATCGATCGGGATAACATCGCGAATTGAATTTATGCTCT
65 AATAAAGAATCGATCGGAATAACACCGCGAATCAAATTTATGCTCT
* *
22417264 GAAGTCTTAAAAATCATGTCCGGAGGTCTTACAGAATC
1 GAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATC
22417302 ATGCTCGGAG
Statistics
Matches: 127, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
110 116 0.91
111 11 0.09
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (110 bp):
GAGGTCTTAAAAATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACACCACAAGTCAAAAA
ATAAAGAATCGATCGGAATAACACCGCGAATCAAATTTATGCTCT
Found at i:22417301 original size:243 final size:244
Alignment explanation
Indices: 22416849--22417942 Score: 1060
Period size: 243 Copynumber: 4.5 Consensus size: 244
22416839 GATTGGGATG
* * * * * * * * * *
22416849 ACACCGCAAGTCAAAAAATAATGGATTGATCGAGATAATATCGTGAATC-GAATTTATAC-CCAG
1 ACACCACAAGTCAAAAGATAAAGAATTGATCGAAATAACACCGCGAATCAGAATTTATGCTCGA-
* * * * **
22416912 GGGTCTTACAAATCATGCCCGGAGGTCTTATAAAATTGATTGGGATAACACCACAAGTTGAAAAA
65 AGGTCTTACAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAAA
* * * *
22416977 TAAAGAATCGATCAGGATAACATCGCGAATTGAATTTATGCCTGGAGGTCTTAAACATCATGTCT
130 TAAAGAATCGATCGGGATAACATCGCGAATTGAATTTATGCCTAGAGGTCTTAAAAATCATGTCC
22417042 GGAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATA
195 GGAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATA
* * * * *
22417092 ACATCACAAGTGAAAAGATAAAGAATTGATCGGAATAACACCGCGAATCA-AATTTGTGC-CTAG
1 ACACCACAAGTCAAAAGATAAAGAATTGATCGAAATAACACCGCGAATCAGAATTTATGCTCGA-
* *
22417155 AGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGTCAAAAAA
65 AGGTCTTACAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAAA
* *
22417220 TAATGAATCGATCGGGATAACATCGCGAATTGAATTTATGCTCT-GAAGTCTTAAAAATCATGTC
130 TAAAGAATCGATCGGGATAACATCGCGAATTGAATTTATGC-CTAGAGGTCTTAAAAATCATGTC
* * * * *
22417284 CGGAGGTCTTACAGAATCATGCTCGGAGGTTTTACAGAATCGATTGAGATA
194 CGGAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATA
* * *
22417335 ACACCACAAGTCAAAAGATAAAGAATTGATTGAGATAACACCGCGAAT-AG-ATATTAGGCTCGA
1 ACACCACAAGTCAAAAGATAAAGAATTGATCGAAATAACACCGCGAATCAGAAT-TTATGCTCGA
* * * * *
22417398 AGGTCTTAGAAATCATGCCCGGAGATCTTACAGAATCGATTGAGATAACACCACAAGTCGAAAGA
65 AGGTCTTACAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAAA
* * * * * *
22417463 TAAAGAATCGATCGGGATAACA-CTGTGAATTGAAATTATACCTAGAGGTTTTACAGAATCATGC
130 TAAAGAATCGATCGGGATAACATC-GCGAATTGAATTTATGCCTAGAGGTCTTA-AAAATCATGT
*** *** * * * *
22417527 CCGGAGGTCTTACAGAATCA-ACTGGGATAACATCACA-AGTCGA--AAAATA
193 CCGGAGGTCTTACAGAATCATACCCAGAGGTC-TTACAGAATCGACTGAGATA
** ** *** * * * *
22417576 A-A--A-AA-TCGATCGAGATAACACCACAAATCGAAATTATACC-CGAAGATCTTAGAAATCAT
1 ACACCACAAGTC-A-AAAGATAA-AGAATTGATCGAAATAACACCGCG-A-ATC--AGAATTTAT
* * * *
22417635 GCTCGAAGGTCATACAGAATCATGTCTGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGT
59 GCTCGAAGGTCTTACA-AATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGT
* * * * * * * *
22417700 CAAAAGATAAAGAATCAATCGAGATAACATCGTGAATCGAATTTATGCCCAGAGGTATTAGAAAT
123 CAAAAAATAAAGAATCGATCGGGATAACATCGCGAATTGAATTTATGCCTAGAGGTCTTAAAAAT
** * *
22417765 CATG-CCTGGAGGTCTTACAGAATCATGTCCAGAAGTCTTACAGAATCGACTGGGATA
188 CATGTCC-GGAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATA
* * * * *
22417822 ACACCATAATTCAAAAGATAAAGAATCGATCGAAATAACATCGCGAATCA-AATTTATGCCCCG-
1 ACACCACAAGTCAAAAGATAAAGAATTGATCGAAATAACACCGCGAATCAGAATTTATG-CTCGA
*
22417885 AGGTCTTACAGAATCATGCCCGGAGGTCTTATAGAATCGATTGGGATAACACCACAAG
65 AGGTCTTACA-AATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAG
22417943 ATCGATTGAG
Statistics
Matches: 694, Mismatches: 125, Indels: 63
0.79 0.14 0.07
Matches are distributed among these distances:
236 2 0.00
237 3 0.00
238 9 0.01
239 13 0.02
240 3 0.00
241 5 0.01
242 8 0.01
243 413 0.60
244 197 0.28
245 5 0.01
246 4 0.01
247 4 0.01
248 14 0.02
249 9 0.01
250 3 0.00
251 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (244 bp):
ACACCACAAGTCAAAAGATAAAGAATTGATCGAAATAACACCGCGAATCAGAATTTATGCTCGAA
GGTCTTACAAATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCACAAGTCAAAAAAT
AAAGAATCGATCGGGATAACATCGCGAATTGAATTTATGCCTAGAGGTCTTAAAAATCATGTCCG
GAGGTCTTACAGAATCATACCCAGAGGTCTTACAGAATCGACTGAGATA
Found at i:22417303 original size:23 final size:23
Alignment explanation
Indices: 22417257--22417324 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
22417247 AATTGAATTT
* * *
22417257 ATGCTCTGAAGTCTTA-AAAATC
1 ATGCTCGGAGGTCTTACAGAATC
22417279 ATG-TCCGGAGGTCTTACAGAATC
1 ATGCT-CGGAGGTCTTACAGAATC
*
22417302 ATGCTCGGAGGTTTTACAGAATC
1 ATGCTCGGAGGTCTTACAGAATC
22417325 GATTGAGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 12 0.31
23 25 0.64
24 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (23 bp):
ATGCTCGGAGGTCTTACAGAATC
Found at i:22417303 original size:133 final size:133
Alignment explanation
Indices: 22417154--22417434 Score: 379
Period size: 133 Copynumber: 2.1 Consensus size: 133
22417144 TTTGTGCCTA
* * *
22417154 GAGGTCTTAGA-AATCATGCCCGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGTCAAAA
1 GAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAA
* * * * *
22417218 AATAATGAATCGATCGGGATAACATCGCGAATTGA-ATTTATGCTCTGAA-GTCTTAAAAATCAT
66 AATAAAGAATCGATCGAGATAACACCGCGAATAGATA-TTAGGCTC-GAAGGTCTTAAAAATCAT
*
22417281 GTCCG
129 GCCCG
* *
22417286 GAGGTCTTACAGAATCATGCTCGGAGGTTTTACAGAATCGATTGAGATAACACCACAAGTCAAAA
1 GAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAA
* * * *
22417351 GATAAAGAATTGATTGAGATAACACCGCGAATAGATATTAGGCTCGAAGGTCTTAGAAATCATGC
66 AATAAAGAATCGATCGAGATAACACCGCGAATAGATATTAGGCTCGAAGGTCTTAAAAATCATGC
22417416 CCG
131 CCG
*
22417419 GAGATCTTACAGAATC
1 GAGGTCTTACAGAATC
22417435 GATTGAGATA
Statistics
Matches: 130, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
132 13 0.10
133 116 0.89
134 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (133 bp):
GAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAA
AATAAAGAATCGATCGAGATAACACCGCGAATAGATATTAGGCTCGAAGGTCTTAAAAATCATGC
CCG
Found at i:22417440 original size:110 final size:110
Alignment explanation
Indices: 22417287--22417655 Score: 420
Period size: 110 Copynumber: 3.3 Consensus size: 110
22417277 TCATGTCCGG
* *
22417287 AGGTCTTACAGAATCATGCTCGGAGGTTTTACAGAATCGATTGAGATAACACCACAAGTCAAAAG
1 AGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAAG
* * * **
22417352 ATAAAGAATTGATTGAGATAACACCGCGAATAGATATTAGGCTCGA
66 ATAAAGAATCGATCGAGATAACACCGCGAATAGAAATTATAC-CGA
* * *
22417398 AGGTCTTAGA-AATCATGCCCGGAGATCTTACAGAATCGATTGAGATAACACCACAAGTCGAAAG
1 AGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAAG
* * * * *
22417462 ATAAAGAATCGATCGGGATAACACTGTGAATTGAAATTATACCTA
66 ATAAAGAATCGATCGAGATAACACCGCGAATAGAAATTATACCGA
* * * * *
22417507 GAGGTTTTACAGAATCATGCCCGGAGGTCTTACAGAATCAACTGGGATAACATCACAAGTCGAAA
1 -AGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTC-AAA
* * * *
22417572 A-ATAAAAAATCGATCGAGATAACACCACAAATCGAAATTATACCCGA
64 AGATAAAGAATCGATCGAGATAACACCGCGAATAGAAATTATA-CCGA
* * * * *
22417619 AGATCTTAGA-AATCATGCTCGAAGGTCATACAGAATC
1 AGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATC
22417656 ATGTCTGGAG
Statistics
Matches: 217, Mismatches: 37, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
109 2 0.01
110 115 0.53
111 94 0.43
112 6 0.03
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (110 bp):
AGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATCGATTGAGATAACACCACAAGTCAAAAG
ATAAAGAATCGATCGAGATAACACCGCGAATAGAAATTATACCGA
Found at i:22417656 original size:23 final size:23
Alignment explanation
Indices: 22417629--22417678 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
22417619 AGATCTTAGA
22417629 AATCATG-CTCGAAGGTCATACAG
1 AATCATGTCT-GAAGGTCATACAG
* *
22417652 AATCATGTCTGGAGGTCTTACAG
1 AATCATGTCTGAAGGTCATACAG
22417675 AATC
1 AATC
22417679 GATTGGGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (23 bp):
AATCATGTCTGAAGGTCATACAG
Found at i:22417862 original size:133 final size:132
Alignment explanation
Indices: 22417507--22417922 Score: 521
Period size: 133 Copynumber: 3.1 Consensus size: 132
22417497 ATTATACCTA
* * * * *
22417507 GAGGTTTTACAGAATCATGCCCGGAGGTCTTACAGAATCAACTGGGATAACATCACAAGTCGAAA
1 GAGGTCTTACAGAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCATAAGTC-AAA
* * * * * * *
22417572 A-ATAAAAAATCGATCGAGATAACACCACAAATCGAAATTATACCCGAAGATCTTAGAAATCATG
65 AGATAAAGAATCGATCGAGATAACATCGCGAATCGAATTTATGCCCG-AGGTCTTAGAAATCATG
22417636 -CTCG
129 CCT-G
* * * *
22417640 AAGGTCATACAGAATCATGTCTGGAGGTCTTACAGAATCGATTGGGATAACACCATAAGTCAAAA
1 GAGGTCTTACAGAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAA
* * *
22417705 GATAAAGAATCAATCGAGATAACATCGTGAATCGAATTTATGCCCAGAGGTATTAGAAATCATGC
66 GATAAAGAATCGATCGAGATAACATCGCGAATCGAATTTATGCCC-GAGGTCTTAGAAATCATGC
22417770 CTG
130 CTG
* * *
22417773 GAGGTCTTACAGAATCATGTCCAGAAGTCTTACAGAATCGACTGGGATAACACCATAATTCAAAA
1 GAGGTCTTACAGAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAA
* * *
22417838 GATAAAGAATCGATCGAAATAACATCGCGAATCAAATTTATGCCCCGAGGTCTTACAGAATCATG
66 GATAAAGAATCGATCGAGATAACATCGCGAATCGAATTTATG-CCCGAGGTCTTAGA-AATCATG
*
22417903 CCCG
129 CCTG
*
22417907 GAGGTCTTATAGAATC
1 GAGGTCTTACAGAATC
22417923 GATTGGGATA
Statistics
Matches: 244, Mismatches: 34, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
132 4 0.02
133 209 0.86
134 31 0.13
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (132 bp):
GAGGTCTTACAGAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCATAAGTCAAAA
GATAAAGAATCGATCGAGATAACATCGCGAATCGAATTTATGCCCGAGGTCTTAGAAATCATGCC
TG
Found at i:22417910 original size:23 final size:23
Alignment explanation
Indices: 22417877--22417922 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
22417867 AATCAAATTT
22417877 ATGCCCCGAGGTCTTACAGAATC
1 ATGCCCCGAGGTCTTACAGAATC
* *
22417900 ATGCCCGGAGGTCTTATAGAATC
1 ATGCCCCGAGGTCTTACAGAATC
22417923 GATTGGGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (23 bp):
ATGCCCCGAGGTCTTACAGAATC
Found at i:22418143 original size:23 final size:22
Alignment explanation
Indices: 22418085--22418150 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
22418075 ATCGAAATTT
*
22418085 TACCCGAAAGTCTTAAAAATCA
1 TACCCGAAGGTCTTAAAAATCA
*
22418107 TACCCGAAGATCTTATAAAATCA
1 TACCCGAAGGTCTTA-AAAATCA
** * *
22418130 TGTCCGGAGGTCTTACAAATC
1 TACCCGAAGGTCTTAAAAATC
22418151 TCAAAATCTT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26
Consensus pattern (22 bp):
TACCCGAAGGTCTTAAAAATCA
Found at i:22418331 original size:41 final size:41
Alignment explanation
Indices: 22418274--22418378 Score: 142
Period size: 41 Copynumber: 2.6 Consensus size: 41
22418264 TTCTGAGGAA
*
22418274 GGTTCC-CTCTAAACAGAGGCTTTGAAATCTTGATTGA-AATT
1 GGTTCCTCT-TAAACAGAGGCTTTGAAATCTTGATTGAGAA-C
22418315 GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
1 GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
* * *
22418356 GGTTCTTCTTAAATAGAGACTTT
1 GGTTCCTCTTAAACAGAGGCTTT
22418379 AAAACTTTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
41 54 0.93
42 4 0.07
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (41 bp):
GGTTCCTCTTAAACAGAGGCTTTGAAATCTTGATTGAGAAC
Found at i:22420095 original size:14 final size:14
Alignment explanation
Indices: 22420076--22420119 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
22420066 AAATATGTCC
22420076 CTTTTATTTTTTTT
1 CTTTTATTTTTTTT
22420090 CTTTTATTTTTGCTTT
1 CTTTTATTTTT--TTT
22420106 -TTTTAGTTTTTTTT
1 CTTTTA-TTTTTTTT
22420120 TATGCCCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 14 0.52
15 5 0.19
16 8 0.30
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.82
Consensus pattern (14 bp):
CTTTTATTTTTTTT
Found at i:22420115 original size:21 final size:20
Alignment explanation
Indices: 22420082--22420120 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22420072 GTCCCTTTTA
*
22420082 TTTTTTTTCTTTTATTTTTGC
1 TTTTTTTACTTTT-TTTTTGC
*
22420103 TTTTTTTAGTTTTTTTTT
1 TTTTTTTACTTTTTTTTT
22420121 ATGCCCCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.05, C:0.05, G:0.05, T:0.85
Consensus pattern (20 bp):
TTTTTTTACTTTTTTTTTGC
Found at i:22426712 original size:16 final size:16
Alignment explanation
Indices: 22426691--22426721 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22426681 TTAGGGTTTT
22426691 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
22426707 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
22426722 GTTTTGAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:22426714 original size:30 final size:30
Alignment explanation
Indices: 22426680--22426736 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22426670 ATATGGAAGG
*
22426680 TTTAGGGTTTTGATTTT-AGAGTTTGGAGAT
1 TTTAGGGTTTGGATTTTGA-AGTTTGGAGAT
*
22426710 TTTAGGGTTTGGGTTTTGAAGTTTGGA
1 TTTAGGGTTTGGATTTTGAAGTTTGGA
22426737 TTTTTGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (30 bp):
TTTAGGGTTTGGATTTTGAAGTTTGGAGAT
Found at i:22426745 original size:51 final size:50
Alignment explanation
Indices: 22426687--22426791 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 50
22426677 AGGTTTAGGG
* *
22426687 TTTTGATTTTAGAGTTTGGAGATTTTAGGG-TTTGGGTTTTGAAGTTTGGAT
1 TTTTGATTTAAGAGTTT--AGATTTTAGGGATTTGGATTTTGAAGTTTGGAT
* * **
22426738 TTTTGATTTAAGGGTTTCGATTTTAGGGATTTTGGATTTTGCGGTTTGGAT
1 TTTTGATTTAAGAGTTTAGATTTTAGGGA-TTTGGATTTTGAAGTTTGGAT
22426789 TTT
1 TTT
22426792 AGGGGTTCGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 10 0.22
51 36 0.78
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (50 bp):
TTTTGATTTAAGAGTTTAGATTTTAGGGATTTGGATTTTGAAGTTTGGAT
Found at i:22426762 original size:15 final size:15
Alignment explanation
Indices: 22426744--22427005 Score: 130
Period size: 15 Copynumber: 16.7 Consensus size: 15
22426734 GGATTTTTGA
*
22426744 TTTAAGGGTTTCGAT
1 TTTAAGGGTTTGGAT
22426759 TTT-AGGGATTTTGGAT
1 TTTAAGGG--TTTGGAT
22426775 TTT--GCGGTTTGGAT
1 TTTAAG-GGTTTGGAT
* * *
22426789 TTTAGGGGTTCGAAT
1 TTTAAGGGTTTGGAT
* *
22426804 TTTAGATGGTTT-GAA
1 TTTA-AGGGTTTGGAT
22426819 TTTAAGGGATTTTGGATT
1 TTTAAGGG--TTTGGA-T
22426837 TTTAAGGGTTTCGGA-
1 TTTAAGGGTTT-GGAT
22426852 TTTAAGGGATTTTGGAT
1 TTTAAGGG--TTTGGAT
22426869 TTT--GCGGTTTGGAT
1 TTTAAG-GGTTTGGAT
* * *
22426883 TTTAGGGGTTCGAAT
1 TTTAAGGGTTTGGAT
* *
22426898 TTTAGATGGTTT-GAA
1 TTTA-AGGGTTTGGAT
22426913 TTTAAGGGATTTTGGATT
1 TTTAAGGG--TTTGGA-T
22426931 TTTAAGGGTTTCGGA-
1 TTTAAGGGTTT-GGAT
*
22426946 TTTAAGGGATTTTGTAT
1 TTTAAGGG--TTTGGAT
*
22426963 TTT-AGGATTTTGGAT
1 TTTAAGG-GTTTGGAT
**
22426978 TTTAAGAAATTTTGGAT
1 TTTAAG--GGTTTGGAT
22426995 TTTAAGGGTTT
1 TTTAAGGGTTT
22427006 TAGAAACCTA
Statistics
Matches: 192, Mismatches: 25, Indels: 60
0.69 0.09 0.22
Matches are distributed among these distances:
14 30 0.16
15 65 0.34
16 45 0.23
17 36 0.19
18 16 0.08
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTAAGGGTTTGGAT
Found at i:22426777 original size:16 final size:16
Alignment explanation
Indices: 22426734--22426998 Score: 132
Period size: 16 Copynumber: 16.9 Consensus size: 16
22426724 TTTGAAGTTT
* *
22426734 GGATTTTTGATTTAAG
1 GGATTTTGGATTTTAG
*
22426750 GG--TTTCGATTTTAG
1 GGATTTTGGATTTTAG
22426764 GGATTTTGGATTTT-G
1 GGATTTTGGATTTTAG
22426779 CGG--TTTGGATTTTAG
1 -GGATTTTGGATTTTAG
* * *
22426794 GG-GTTCGAATTTTA-
1 GGATTTTGGATTTTAG
* *
22426808 -GATGGTTTGAATTTAAG
1 GGAT--TTTGGATTTTAG
22426825 GGATTTTGGATTTTTAAG
1 GGATTTTGGA-TTTT-AG
* *
22426843 GG-TTTCGGATTTAAG
1 GGATTTTGGATTTTAG
22426858 GGATTTTGGATTTT-G
1 GGATTTTGGATTTTAG
22426873 CGG--TTTGGATTTTAG
1 -GGATTTTGGATTTTAG
* * *
22426888 GG-GTTCGAATTTTA-
1 GGATTTTGGATTTTAG
* *
22426902 -GATGGTTTGAATTTAAG
1 GGAT--TTTGGATTTTAG
22426919 GGATTTTGGATTTTTAAG
1 GGATTTTGGA-TTTT-AG
* *
22426937 GG-TTTCGGATTTAAG
1 GGATTTTGGATTTTAG
*
22426952 GGATTTTGTATTTTA-
1 GGATTTTGGATTTTAG
22426967 GGATTTTGGATTTTAAG
1 GGATTTTGGATTTT-AG
**
22426984 AAATTTTGGATTTTA
1 GGATTTTGGATTTTA
22426999 AGGGTTTTAG
Statistics
Matches: 194, Mismatches: 29, Indels: 52
0.71 0.11 0.19
Matches are distributed among these distances:
13 2 0.01
14 36 0.19
15 43 0.22
16 69 0.36
17 30 0.15
18 14 0.07
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.48
Consensus pattern (16 bp):
GGATTTTGGATTTTAG
Found at i:22426860 original size:94 final size:94
Alignment explanation
Indices: 22426744--22426965 Score: 419
Period size: 94 Copynumber: 2.4 Consensus size: 94
22426734 GGATTTTTGA
*
22426744 TTTAAGGGTTTC-GATTTTAGGGATTTTGGATTTTGCGGTTTGGATTTTAGGGGTTCGAATTTTA
1 TTTAAGGGTTTCGGATTTAAGGGATTTTGGATTTTGCGGTTTGGATTTTAGGGGTTCGAATTTTA
22426808 GATGGTTTGAATTTAAGGGATTTTGGATT
66 GATGGTTTGAATTTAAGGGATTTTGGATT
22426837 TTTAAGGGTTTCGGATTTAAGGGATTTTGGATTTTGCGGTTTGGATTTTAGGGGTTCGAATTTTA
1 TTTAAGGGTTTCGGATTTAAGGGATTTTGGATTTTGCGGTTTGGATTTTAGGGGTTCGAATTTTA
22426902 GATGGTTTGAATTTAAGGGATTTTGGATT
66 GATGGTTTGAATTTAAGGGATTTTGGATT
*
22426931 TTTAAGGGTTTCGGATTTAAGGGATTTTGTATTTT
1 TTTAAGGGTTTCGGATTTAAGGGATTTTGGATTTT
22426966 AGGATTTTGG
Statistics
Matches: 126, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
93 12 0.10
94 114 0.90
ACGTcount: A:0.20, C:0.03, G:0.30, T:0.47
Consensus pattern (94 bp):
TTTAAGGGTTTCGGATTTAAGGGATTTTGGATTTTGCGGTTTGGATTTTAGGGGTTCGAATTTTA
GATGGTTTGAATTTAAGGGATTTTGGATT
Found at i:22426966 original size:17 final size:17
Alignment explanation
Indices: 22426819--22427006 Score: 138
Period size: 15 Copynumber: 11.8 Consensus size: 17
22426809 ATGGTTTGAA
22426819 TTTAAGGGATTTTGGATT
1 TTTAAGGGATTTTGGA-T
*
22426837 TTTAAGGG-TTTCGGA-
1 TTTAAGGGATTTTGGAT
22426852 TTTAAGGGATTTTGGAT
1 TTTAAGGGATTTTGGAT
22426869 TTT--GCGG--TTTGGAT
1 TTTAAG-GGATTTTGGAT
* * *
22426883 TTT-AGGG-GTTCGAAT
1 TTTAAGGGATTTTGGAT
* *
22426898 TTTAGATGG--TTT-GAA
1 TTTA-AGGGATTTTGGAT
22426913 TTTAAGGGATTTTGGATT
1 TTTAAGGGATTTTGGA-T
*
22426931 TTTAAGGG-TTTCGGA-
1 TTTAAGGGATTTTGGAT
*
22426946 TTTAAGGGATTTTGTAT
1 TTTAAGGGATTTTGGAT
22426963 TTT-A-GGATTTTGGAT
1 TTTAAGGGATTTTGGAT
**
22426978 TTTAAGAAATTTTGGAT
1 TTTAAGGGATTTTGGAT
22426995 TTTAAGGG-TTTT
1 TTTAAGGGATTTT
22427007 AGAAACCTAA
Statistics
Matches: 137, Mismatches: 18, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
14 15 0.11
15 44 0.32
16 24 0.18
17 38 0.28
18 16 0.12
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.48
Consensus pattern (17 bp):
TTTAAGGGATTTTGGAT
Found at i:22428473 original size:15 final size:15
Alignment explanation
Indices: 22428453--22428487 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
22428443 CTACTTTCTG
22428453 TTTTTCTCTTTTTTA
1 TTTTTCTCTTTTTTA
22428468 TTTTTCTCTTTTTTA
1 TTTTTCTCTTTTTTA
22428483 TTTTT
1 TTTTT
22428488 TTATATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTCTTTTTTA
Found at i:22428528 original size:15 final size:15
Alignment explanation
Indices: 22428508--22428540 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22428498 AATAATTTTT
*
22428508 TTAAAATTATTATTA
1 TTAAAATTATTAATA
22428523 TTAAAATTATTAATA
1 TTAAAATTATTAATA
22428538 TTA
1 TTA
22428541 TAGTGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAAAATTATTAATA
Found at i:22429590 original size:13 final size:14
Alignment explanation
Indices: 22429561--22429595 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
22429551 ACCAACCACG
*
22429561 AAAACAGAAACACA
1 AAAAAAGAAACACA
22429575 AAAAAAGAAACA-A
1 AAAAAAGAAACACA
22429588 AAAAAAGA
1 AAAAAAGA
22429596 CAAACAATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.80, C:0.11, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAACACA
Found at i:22430679 original size:14 final size:14
Alignment explanation
Indices: 22430662--22430704 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
22430652 CTAAAACTCT
22430662 TAAATCCAAACCCC
1 TAAATCCAAACCCC
*
22430676 TAAAATCCAAACCCT
1 T-AAATCCAAACCCC
*
22430691 TAAATCAAAACCCC
1 TAAATCCAAACCCC
22430705 AAACTTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (14 bp):
TAAATCCAAACCCC
Found at i:22430683 original size:15 final size:15
Alignment explanation
Indices: 22430663--22430704 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
22430653 TAAAACTCTT
22430663 AAATCCAAACCCCTA
1 AAATCCAAACCCCTA
*
22430678 AAATCCAAA-CCCTT
1 AAATCCAAACCCCTA
*
22430692 AAATCAAAACCCC
1 AAATCCAAACCCC
22430705 AAACTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (15 bp):
AAATCCAAACCCCTA
Found at i:22430791 original size:29 final size:29
Alignment explanation
Indices: 22430742--22430820 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
22430732 TAAAATCTTC
* **
22430742 AAACTCTAAAATCAAAACCCTAAACCTTTCA
1 AAACT-TAAAA-CCAAACCCTAAACCCCTCA
* *
22430773 TACCTTAAAACCAAACCCTAAACCCCTCA
1 AAACTTAAAACCAAACCCTAAACCCCTCA
*
22430802 AAACTTAAATCCAAACCCT
1 AAACTTAAAACCAAACCCT
22430821 TAAAATCCTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 32 0.80
30 5 0.12
31 3 0.08
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (29 bp):
AAACTTAAAACCAAACCCTAAACCCCTCA
Found at i:22432572 original size:22 final size:22
Alignment explanation
Indices: 22432547--22432590 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
22432537 TGTATATTTA
*
22432547 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
22432569 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
22432591 GAAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:22435607 original size:23 final size:23
Alignment explanation
Indices: 22435577--22435628 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
22435567 ATAGTGTTTG
22435577 ACTAGAGAATTTGAGATAAAAAA
1 ACTAGAGAATTTGAGATAAAAAA
22435600 ACTAGAGAATTTGAGATAAAAAA
1 ACTAGAGAATTTGAGATAAAAAA
22435623 ACTAGA
1 ACTAGA
22435629 AAGATTGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.21
Consensus pattern (23 bp):
ACTAGAGAATTTGAGATAAAAAA
Found at i:22435636 original size:23 final size:23
Alignment explanation
Indices: 22435577--22435636 Score: 86
Period size: 23 Copynumber: 2.6 Consensus size: 23
22435567 ATAGTGTTTG
*
22435577 ACTAGAGAATTTGAGATAAAAAA
1 ACTAGAGAAATTGAGATAAAAAA
*
22435600 ACTAGAGAATTTGAGATAAAAAA
1 ACTAGAGAAATTGAGATAAAAAA
22435623 ACTAGA-AAGATTGA
1 ACTAGAGAA-ATTGA
22435637 AGTACTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 2 0.06
23 33 0.94
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.22
Consensus pattern (23 bp):
ACTAGAGAAATTGAGATAAAAAA
Found at i:22436579 original size:22 final size:22
Alignment explanation
Indices: 22436551--22436594 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
22436541 TGTATATTTA
*
22436551 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
22436573 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
22436595 GATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:22447788 original size:21 final size:21
Alignment explanation
Indices: 22447764--22447808 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
22447754 TTTCATCACT
22447764 TTGAACATCAAG-ATCACCAAC
1 TTGAACATC-AGTATCACCAAC
**
22447785 TTGAGTATCAGTATCACCAAC
1 TTGAACATCAGTATCACCAAC
22447806 TTG
1 TTG
22447809 TATAACATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (21 bp):
TTGAACATCAGTATCACCAAC
Found at i:22450099 original size:172 final size:172
Alignment explanation
Indices: 22449786--22450132 Score: 509
Period size: 172 Copynumber: 2.0 Consensus size: 172
22449776 GATGGGTTGC
* * * * *
22449786 AAATGGGTATTTGAGGAAGGTGAGTTTTGGATAAAATTGTTTAAACAAAAAAGAATATTACGAAT
1 AAATAGGTATTAGAGGAAGGTGAGTCTTGAAGAAAATTGTTTAAACAAAAAAGAATATTAC-AAT
* *
22449851 TACAGAAGCTAAAGGAATAGCAAAATTAAATAAAAGTTAAAGTAAATAACTAATGAATAGTCAAA
65 TACAGAAGCTAAAGGAATAGCAAAATGAAATAAAAGCTAAAGTAAATAACTAATGAATAGTCAAA
* *
22449916 ATAGAGTTCTAAAAGACAAAGCTTGAATACTAAAAGCTGAAGA
130 ACAGAGTTCTAAAAGACAAAGCTTGAATACTAAAAGCTAAAGA
* *
22449959 AAATAGGTATTAGAGGAAGGTGGGTCTTGAAGAAAATTGTTTAAACCAAAAAGAATATCGTA-AA
1 AAATAGGTATTAGAGGAAGGTGAGTCTTGAAGAAAATTGTTTAAACAAAAAAGAATAT--TACAA
* * *
22450023 TTACA-AAGCTGAAGGAATAGTAAAATGAAATAAAAGCTAAAGTAAATAACTAATGAATAGTCGA
64 TTACAGAAGCTAAAGGAATAGCAAAATGAAATAAAAGCTAAAGTAAATAACTAATGAATAGTCAA
* *
22450087 AACAGGGTTCTAAAAGACAAAGCTTGAATACTAAAAGGTAAAGA
129 AACAGAGTTCTAAAAGACAAAGCTTGAATACTAAAAGCTAAAGA
22450131 AA
1 AA
22450133 GGGAAAATAA
Statistics
Matches: 156, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
172 96 0.62
173 58 0.37
175 2 0.01
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.23
Consensus pattern (172 bp):
AAATAGGTATTAGAGGAAGGTGAGTCTTGAAGAAAATTGTTTAAACAAAAAAGAATATTACAATT
ACAGAAGCTAAAGGAATAGCAAAATGAAATAAAAGCTAAAGTAAATAACTAATGAATAGTCAAAA
CAGAGTTCTAAAAGACAAAGCTTGAATACTAAAAGCTAAAGA
Found at i:22451110 original size:247 final size:236
Alignment explanation
Indices: 22450518--22451593 Score: 1243
Period size: 237 Copynumber: 4.5 Consensus size: 236
22450508 TCTAAGAGTA
** ** * *
22450518 AATTATTGAAGGCATTT-TATGAGAAAAATTCCTTAAATAAATTTCTTTTAAAAATTATTTGGGA
1 AATTATTGAAGGTGTTTCT-TGAGAAAAACACCTTGAATAAATTTCTTTTAAAAATTATTTGAGA
* * * * * **
22450582 TTAATAAA-GACGTCTTCTAGTAGAAAACACCTTCAATATTTTGCTATTAAATTGCAAGATGGTT
65 TTATTAAATG-CGTCTTCTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTT
* * * * * * *
22450646 AATGAAGGCTTTTATTCCAGAAAA-A-ATCTTCACTAACTCGTTCTAATTTTTTAAAAAATTTAT
129 AGTGAAAGCGTTTATTCCAGAAAACACAT-TT-ACTAATTCATTCTAATTTTTGAAAGAATTTAT
* *
22450709 TGAAGACATTTTTTACATTATACGCCTTCAATAATTTTTGTACAG
192 TGAAGGCATTTTTTGCATTATACGCCTTCAATAATTTTTGTACAG
22450754 AATTATTGAAGGTGTTTCTTGAGAAAAAACACCTTGAATAAATTTCTTTTAAAAATTATTTGAGA
1 AATTATTGAAGGTGTTTCTTGAG-AAAAACACCTTGAATAAATTTCTTTTAAAAATTATTTGAGA
* * *
22450819 TTATTAAATGTGTCTTCTAGTGGAAAACGCTTTCAATATTCTACTACTAAATTGCAAGACAGTTA
65 TTATTAAATGCGTCTTCTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTA
*
22450884 GTGAAAGCGTTTATTCCAGAAAACACCTTTACTAATTCATTCTAATTTTTGAAAGAATTTATTGA
130 GTGAAAGCGTTTATTCCAGAAAACACATTTACTAATTCATTCTAATTTTTGAAAGAATTTATTGA
*
22450949 AGGCATTTTTGGCATTATACGCCTTCAATAATCCTTCAATCATTTTTGTACAG
195 AGGCATTTTTTGCATTATACGCCTTC---AA----T--A--ATTTTTGTACAG
* *
22451002 AATTATTGAAGGTGTTTCTTGAGAAAAACATCTTGAATAAATTT-TTTTAAAAAATTATTTGAAA
1 AATTATTGAAGGTGTTTCTTGAGAAAAACACCTTGAATAAATTTCTTTT-AAAAATTATTTGAGA
* *
22451066 TTATTAAATGCGTCTTCTAGTAGAAAACGCTTTTAATATTCTACTACTAAATTGCAAGACAGTTA
65 TTATTAAATGCGTCTTCTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTA
* * *
22451131 GTGAAAGTGTTTATTCCAGAAAACACATTTACTAATTCATTCTAATTATTGAACGAATTTATTGA
130 GTGAAAGCGTTTATTCCAGAAAACACATTTACTAATTCATTCTAATTTTTGAAAGAATTTATTGA
**
22451196 AGGTTTTTTTTGCATTATACGCCTTCAATAATTTTTGTACAG
195 AGGCATTTTTTGCATTATACGCCTTCAATAATTTTTGTACAG
* ** *
22451238 AATTATTGAAGGTGCTTCTTGAGAAAAATGCCTTGAATAAA-CTCTTTTTAAAAATTATTTGAGA
1 AATTATTGAAGGTGTTTCTTGAGAAAAACACCTTGAATAAATTTC-TTTTAAAAATTATTTGAGA
** * * * * **
22451302 TTATTAAGGGCATATTCTAGTAGAAAACGCCTTCAATATTTTATTACTAAATTGCAAGATGGTTA
65 TTATTAAATGCGTCTTCTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTA
* * * * * *
22451367 GTGAAGGTGTTTATTCAAGAAAAACACATTTACTAATTCGTTCTAATTTTTGGAAGAATTTACTG
130 GTGAAAGCGTTTATTCCAG-AAAACACATTTACTAATTCATTCTAATTTTTGAAAGAATTTATTG
* *
22451432 AAGGCATTTTTTGCATTATATGCCTTTAATAATTTTT-TAACAG
194 AAGGCATTTTTTGCATTATACGCCTTCAATAATTTTTGT-ACAG
* * * * * * *
22451475 AATTATTGAAGGAGTTTCTTAAGAGAAAACGCCTTCAAT-AATTTCTTTTTAAAATTTTTTTTAG
1 AATTATTGAAGGTGTTTCTTGAGA-AAAACACCTTGAATAAATTTC-TTTTAAAAATTATTTGAG
* * * * *
22451539 TTTATTAAAGGCATTGTCTTCTAATATAAAATGCCTTCAATATT-TCACTACTAAA
64 ATTATTAAATGC---GTCTTCTAGTAGAAAACGCCTTCAATATTCT-ACTACTAAA
22451594 ATTTTAAGAT
Statistics
Matches: 730, Mismatches: 83, Indels: 49
0.85 0.10 0.06
Matches are distributed among these distances:
235 1 0.00
236 155 0.21
237 269 0.37
238 45 0.06
239 1 0.00
240 4 0.01
241 32 0.04
244 3 0.00
246 5 0.01
247 180 0.25
248 35 0.05
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (236 bp):
AATTATTGAAGGTGTTTCTTGAGAAAAACACCTTGAATAAATTTCTTTTAAAAATTATTTGAGAT
TATTAAATGCGTCTTCTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTAG
TGAAAGCGTTTATTCCAGAAAACACATTTACTAATTCATTCTAATTTTTGAAAGAATTTATTGAA
GGCATTTTTTGCATTATACGCCTTCAATAATTTTTGTACAG
Found at i:22451401 original size:484 final size:484
Alignment explanation
Indices: 22450518--22451464 Score: 1282
Period size: 484 Copynumber: 2.0 Consensus size: 484
22450508 TCTAAGAGTA
* **
22450518 AATTATTGAAGGCATTTTATGAGAAAAATTCCTTAAATAAATTTCTTTTAAAAATTATTTGGGAT
1 AATTATTGAAGGCATTTTATGAGAAAAAATCCTTAAATAAATTTCTTTTAAAAATTATTTGAAAT
* * * **
22450583 TAATAAAGACGTCTTCTAGTAGAAAACACCTTCAATATTTTGCTATTAAATTGCAAGATGGTTAA
66 TAATAAAGACGTCTTCTAGTAGAAAACACCTTCAATATTCTACTACTAAATTGCAAGACAGTTAA
* * * *
22450648 TGAAGGCTTTTATTCCAGAAAAAATCTTCACTAACTCGTTCTAATTTTTTAAAAAATTTATTGAA
131 TGAAAGCTTTTATTCCAGAAAAAATCTTCACTAACTCATTCTAATTATTGAAAAAATTTATTGAA
*
22450713 GACATTTTTTACATTATACGCCTTCAATAATTTTTGTACAGAATTATTGAAGGTGTTTCTTGAGA
196 GACATTTTTTACATTATACGCCTTCAATAATTTTTGTACAGAATTATTGAAGGTGCTTCTTGAGA
* * ** * *
22450778 AAAAACACCTTGAATAAATTTCTTTTAAAAATTATTTGAGATTATTAAATGTGTCTTCTAGTGGA
261 AAAAACACCTTGAATAAATCTCTTTTAAAAATTATTTGAGATTATTAAAGGCATATTCTAGTAGA
* *
22450843 AAACGCTTTCAATATTCTACTACTAAATTGCAAGACAGTTAGTGAAAGCGTTTATTCCAGAAAAC
326 AAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTAGTGAAAGCGTTTATTCAAGAAAAC
* *
22450908 ACCTTTACTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGCATTTTTGGCATTATACGCCT
391 ACATTTACTAATTCATTCTAATTTTTGAAAGAATTTACTGAAGGCATTTTTGGCATTATACGCCT
22450973 TCAATAATCCTTCAATCATTTTTGTACAG
456 TCAATAATCCTTCAATCATTTTTGTACAG
** *
22451002 AATTATTGAAGGTGTTTCT-TGAGAAAAACAT-CTTGAATAAATTT-TTTTAAAAAATTATTTGA
1 AATTATTGAAGGCATTT-TATGAGAAAAA-ATCCTTAAATAAATTTCTTTT-AAAAATTATTTGA
* * * *
22451064 AATTATTAAATG-CGTCTTCTAGTAGAAAACGCTTTTAATATTCTACTACTAAATTGCAAGACAG
63 AATTAATAAA-GACGTCTTCTAGTAGAAAACACCTTCAATATTCTACTACTAAATTGCAAGACAG
* * **
22451128 TTAGTGAAAG-TGTTTATTCCAGAAAACACAT-TT-ACTAATTCATTCTAATTATTGAACGAATT
127 TTAATGAAAGCT-TTTATTCCAGAAAA-A-ATCTTCACTAACTCATTCTAATTATTGAAAAAATT
*** *
22451190 TATTGAAGGTTTTTTTTGCATTATACGCCTTCAATAATTTTTGTACAGAATTATTGAAGGTGCTT
189 TATTGAAGACATTTTTTACATTATACGCCTTCAATAATTTTTGTACAGAATTATTGAAGGTGCTT
** *
22451255 CTTGAG-AAAAATGCCTTGAATAAA-CTCTTTTTAAAAATTATTTGAGATTATTAAGGGCATATT
254 CTTGAGAAAAAACACCTTGAATAAATCTC-TTTTAAAAATTATTTGAGATTATTAAAGGCATATT
* * ** * *
22451318 CTAGTAGAAAACGCCTTCAATATTTTATTACTAAATTGCAAGATGGTTAGTGAAGGTGTTTATTC
318 CTAGTAGAAAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTAGTGAAAGCGTTTATTC
* * *
22451383 AAGAAAAACACATTTACTAATTCGTTCTAATTTTTGGAAGAATTTACTGAAGGCATTTTTTGCAT
383 AAG-AAAACACATTTACTAATTCATTCTAATTTTTGAAAGAATTTACTGAAGGCATTTTTGGCAT
* *
22451448 TATATGCCTTTAATAAT
447 TATACGCCTTCAATAAT
22451465 TTTTTAACAG
Statistics
Matches: 402, Mismatches: 52, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
482 2 0.00
483 110 0.27
484 282 0.70
485 6 0.01
486 2 0.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.39
Consensus pattern (484 bp):
AATTATTGAAGGCATTTTATGAGAAAAAATCCTTAAATAAATTTCTTTTAAAAATTATTTGAAAT
TAATAAAGACGTCTTCTAGTAGAAAACACCTTCAATATTCTACTACTAAATTGCAAGACAGTTAA
TGAAAGCTTTTATTCCAGAAAAAATCTTCACTAACTCATTCTAATTATTGAAAAAATTTATTGAA
GACATTTTTTACATTATACGCCTTCAATAATTTTTGTACAGAATTATTGAAGGTGCTTCTTGAGA
AAAAACACCTTGAATAAATCTCTTTTAAAAATTATTTGAGATTATTAAAGGCATATTCTAGTAGA
AAACGCCTTCAATATTCTACTACTAAATTGCAAGACAGTTAGTGAAAGCGTTTATTCAAGAAAAC
ACATTTACTAATTCATTCTAATTTTTGAAAGAATTTACTGAAGGCATTTTTGGCATTATACGCCT
TCAATAATCCTTCAATCATTTTTGTACAG
Found at i:22451611 original size:66 final size:61
Alignment explanation
Indices: 22451540--22451685 Score: 166
Period size: 61 Copynumber: 2.3 Consensus size: 61
22451530 TTTTTTTAGT
* * *
22451540 TTATTAAAGGCATTGTCTTCTAATATAAAATGCCTTCAATATTTCACTACTAAAATTTTAAGATA
1 TTATTAAAGGCATT-TATTC-AACA-AAAA--CCTTCAATATTCCACTACTAAAATTTTAAGATA
22451605 G
61 G
* * * *
22451606 TTATTAAAGGCATTTATTCCACAAACACCTTCAATATTCCACTACTAAACTTTTAAGATGG
1 TTATTAAAGGCATTTATTCAACAAAAACCTTCAATATTCCACTACTAAAATTTTAAGATAG
* *
22451667 TTATTGAAGGCGTTTATTC
1 TTATTAAAGGCATTTATTC
22451686 CATAAAAATG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
61 48 0.68
63 3 0.04
64 2 0.03
65 4 0.06
66 14 0.20
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (61 bp):
TTATTAAAGGCATTTATTCAACAAAAACCTTCAATATTCCACTACTAAAATTTTAAGATAG
Found at i:22451660 original size:61 final size:61
Alignment explanation
Indices: 22451572--22451687 Score: 187
Period size: 61 Copynumber: 1.9 Consensus size: 61
22451562 ATATAAAATG
*
22451572 CCTTCAATATTTCACTACTAAAATTTTAAGATAGTTATTAAAGGCATTTATTCCACAAACA
1 CCTTCAATATTCCACTACTAAAATTTTAAGATAGTTATTAAAGGCATTTATTCCACAAACA
* * * *
22451633 CCTTCAATATTCCACTACTAAACTTTTAAGATGGTTATTGAAGGCGTTTATTCCA
1 CCTTCAATATTCCACTACTAAAATTTTAAGATAGTTATTAAAGGCATTTATTCCA
22451688 TAAAAATGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.37
Consensus pattern (61 bp):
CCTTCAATATTCCACTACTAAAATTTTAAGATAGTTATTAAAGGCATTTATTCCACAAACA
Found at i:22451771 original size:303 final size:298
Alignment explanation
Indices: 22451326--22451907 Score: 656
Period size: 303 Copynumber: 1.9 Consensus size: 298
22451316 TTCTAGTAGA
* ** * *
22451326 AAACGCCTTCAATATTTTATTACTAAATTGCAAGATGGTTAGTGAAGGTGTTTATTCAAGAAAAA
1 AAACACCTTCAATATTCCACTACTAAATTGCAAGATGGTTAGTGAAGGCGTTTATTCAAGAAAAA
* * * * *
22451391 CACATTTACTAATTCGTTCTAATTTTTGGAAGAATTTACTGAAGGCATTTTTTGCATTATATGCC
66 CACATTCACTAATCCATACTAATTTTTGGAAGAATTTACTAAAGGCATTTTTTGCA-TATATGCC
* * *
22451456 TTTAATAATTTTT-TAACAGAATTATTGAAG-GAGTTTCTTAAGAGAAAA-CGCCTTCAATAA-T
130 TTTAATAATTTTTGT-ACAGAATTATTGAAGTCA-TTTCTTAAGA-AAAATCACCTTAAATAATT
* * * * * * * *
22451517 TTCTTTTTAAAATTTTTTTTAGTTTATTAAAGGCATTGTCTTCTAATATAAAATGCCTTCAATAT
192 TTC-TTTTAAAAATTATTTGAGATTAATAAAGG---TATCTTCTAATAAAAAATACCTTCAATAT
**
22451582 TTCACTACTAAAATTTTAAGATAGTTATTAAAGGCATTTATTCCAC
253 TTCACTACTAAAATTACAAGATAGTTATTAAAGGCATTTATTCCAC
** * * *
22451628 AAACACCTTCAATATTCCACTACTAAACTTTTAAGATGGTTATTGAAGGCGTTTATTCCATAAAA
1 AAACACCTTCAATATTCCACTACTAAA-TTGCAAGATGGTTAGTGAAGGCGTTTATTCAAGAAAA
** *
22451693 ATGCATTCACTAATCCATACTAATTTTT-GAAGGAATTTATTAAAGGCATCTCTTATTG-A-ATA
65 ACACATTCACTAATCCATACTAATTTTTGGAA-GAATTTACTAAAGGCAT-T-TT-TTGCATATA
* * * * *
22451755 TGCCTTTAATAATTTTTGTAGATAATTATTGAAGTCATTTTTTGAGAAAAATTACCTTAAATAAT
126 TGCCTTTAATAATTTTTGTACAGAATTATTGAAGTCATTTCTTAAGAAAAATCACCTTAAATAAT
* *
22451820 TTTCTTTTAAAAATTATTTGGGATTAATAAAGGTATCTTCTAGTAAAAAATACCTTCAATATTTC
191 TTTCTTTTAAAAATTATTTGAGATTAATAAAGGTATCTTCTAATAAAAAATACCTTCAATATTTC
22451885 ACTACTAAAATTACAAGATAGTT
256 ACTACTAAAATTACAAGATAGTT
22451908 CGTGAATGTG
Statistics
Matches: 233, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
300 49 0.21
302 30 0.13
303 141 0.61
304 7 0.03
305 3 0.01
306 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (298 bp):
AAACACCTTCAATATTCCACTACTAAATTGCAAGATGGTTAGTGAAGGCGTTTATTCAAGAAAAA
CACATTCACTAATCCATACTAATTTTTGGAAGAATTTACTAAAGGCATTTTTTGCATATATGCCT
TTAATAATTTTTGTACAGAATTATTGAAGTCATTTCTTAAGAAAAATCACCTTAAATAATTTTCT
TTTAAAAATTATTTGAGATTAATAAAGGTATCTTCTAATAAAAAATACCTTCAATATTTCACTAC
TAAAATTACAAGATAGTTATTAAAGGCATTTATTCCAC
Found at i:22452060 original size:240 final size:238
Alignment explanation
Indices: 22451632--22452091 Score: 532
Period size: 240 Copynumber: 1.9 Consensus size: 238
22451622 TTCCACAAAC
* ** * * * *
22451632 ACCTTCAATATTCCACTACTAAACTTTTAAGATGGTTATTGAAGGCGTTTATTCCATAAAAATGC
1 ACCTTCAATATTCCACTACTAAAATTACAAGATAGTTAGTGAAGGCGTTTATTCAAAAAAAATGC
* *
22451697 ATTCACTAATCCATACTAATTTTTGAAGGAATTTATTAAAGGCATCTCTTATTGAATATGCCTTT
66 ATTCACTAATCCATACTAATTTTTGAAGGAATTTATTAAAGGCATCTCTTACTGAATACGCCTTT
* * * * *
22451762 AATAATTTTTGTAGATAATTATTGAAGTCATTTTTTGAGAAAAATTACCTTAAATAATTTTCTTT
131 AATAATTTTTGTACAGAATTATTGAAGGCATTCTTTGAGAAAAAGTA-CTTAAATAATTTT-TTT
* *
22451827 -TAAAAATTATTTGGGATTAATAAAGGTATCTTCTAGTAAAAAAT
194 AAAAAAATTATTTGAGATTAATAAAGGTATCTTCTAGTAAAAAAT
* * * *
22451871 ACCTTCAATATTTCACTACTAAAATTACAAGATAGTTCGTGAATGTGTTTATTCAAAAAAAAATG
1 ACCTTCAATATTCCACTACTAAAATTACAAGATAGTTAGTGAAGGCGTTTATTC-AAAAAAAATG
* * * * * * * *
22451936 CCTTCTCTAATTCATTCTAATTTTTGAATGAATTTATTAAAAGGGAT-TTTTGCTGAATACG-CT
65 CATTCACTAATCCATACTAATTTTTGAAGGAATTTATT-AAAGGCATCTCTTACTGAATACGCCT
* * * *
22451999 TTCAATTATTTTTGTACAGAATTATTGAAGGCGTTCTTTGATAATAAACGT-CTTCAATAATTTT
129 TT-AATAATTTTTGTACAGAATTATTGAAGGCATTCTTTGAGAA-AAA-GTACTTAAATAATTTT
*
22452063 TTTAAAAAAATTATTTGAGATTATTAAAG
191 TTTAAAAAAATTATTTGAGATTAATAAAG
22452092 CATCTTTCAG
Statistics
Matches: 182, Mismatches: 33, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
239 52 0.29
240 119 0.65
241 10 0.05
242 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.41
Consensus pattern (238 bp):
ACCTTCAATATTCCACTACTAAAATTACAAGATAGTTAGTGAAGGCGTTTATTCAAAAAAAATGC
ATTCACTAATCCATACTAATTTTTGAAGGAATTTATTAAAGGCATCTCTTACTGAATACGCCTTT
AATAATTTTTGTACAGAATTATTGAAGGCATTCTTTGAGAAAAAGTACTTAAATAATTTTTTTAA
AAAAATTATTTGAGATTAATAAAGGTATCTTCTAGTAAAAAAT
Found at i:22452871 original size:28 final size:28
Alignment explanation
Indices: 22452840--22452922 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
22452830 AAATATTGTG
* * *
22452840 TTTTGCTGAATAGTATTTTGTGATATTA
1 TTTTGCTGAATGGTATTATATGATATTA
* *
22452868 TTTTGCTGAATGGTATTATATGATTTTT
1 TTTTGCTGAATGGTATTATATGATATTA
*
22452896 TTTTGCTGAATGGTATTGTATGATATT
1 TTTTGCTGAATGGTATTATATGATATT
22452923 GGTATGTTGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.23, C:0.04, G:0.19, T:0.54
Consensus pattern (28 bp):
TTTTGCTGAATGGTATTATATGATATTA
Found at i:22452933 original size:28 final size:28
Alignment explanation
Indices: 22452843--22452939 Score: 77
Period size: 28 Copynumber: 3.5 Consensus size: 28
22452833 TATTGTGTTT
* * * ** *
22452843 TGCTGAATAGTATTTTGTGATATTATTT
1 TGCTGAATGGTATTATATGATATTGGTA
* ** *
22452871 TGCTGAATGGTATTATATGATTTTTTTT
1 TGCTGAATGGTATTATATGATATTGGTA
*
22452899 TGCTGAATGGTATTGTATGATATTGGTA
1 TGCTGAATGGTATTATATGATATTGGTA
* *
22452927 TGTTGAATCGTAT
1 TGCTGAATGGTAT
22452940 GCTGAATGGT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.51
Consensus pattern (28 bp):
TGCTGAATGGTATTATATGATATTGGTA
Found at i:22456000 original size:2 final size:2
Alignment explanation
Indices: 22455993--22456020 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22455983 ATCCTTATTT
22455993 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22456021 AAGAAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22456467 original size:28 final size:28
Alignment explanation
Indices: 22456435--22456548 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 28
22456425 GTGCTAGGTA
*
22456435 GCCCAAAATTTTAAAACATTATTGATCG
1 GCCCAAAATTTTAAAACATTATTAATCG
* *
22456463 GCCCAATAAAATTTTTAAACATTATTAAATCA
1 GCCC---AAAATTTTAAAACATTATT-AATCG
* *
22456495 GCCCAAAATTTTAAACCACTATTAATCG
1 GCCCAAAATTTTAAAACATTATTAATCG
* *
22456523 GCCCAATAAGATTTAAACCATTATTA
1 GCCCAA-AA-TTTTAAAACATTATTA
22456549 GATAGATCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
28 14 0.20
29 18 0.25
30 14 0.20
31 18 0.25
32 7 0.10
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (28 bp):
GCCCAAAATTTTAAAACATTATTAATCG
Found at i:22456475 original size:31 final size:31
Alignment explanation
Indices: 22456439--22456548 Score: 120
Period size: 31 Copynumber: 3.6 Consensus size: 31
22456429 TAGGTAGCCC
*
22456439 AAAATTTTAAAACATTATTGATCGGCCCAAT
1 AAAATTTTAAAACATTATTAATCGGCCCAAT
* *
22456470 AAAATTTTTAAACATTATTAAATCAGCCC---
1 AAAATTTTAAAACATTATT-AATCGGCCCAAT
* *
22456499 AAAATTTTAAACCACTATTAATCGGCCCAAT
1 AAAATTTTAAAACATTATTAATCGGCCCAAT
* *
22456530 AAGA-TTTAAACCATTATTA
1 AAAATTTTAAAACATTATTA
22456549 GATAGATCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
28 8 0.12
29 16 0.24
30 14 0.21
31 21 0.32
32 7 0.11
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (31 bp):
AAAATTTTAAAACATTATTAATCGGCCCAAT
Found at i:22456506 original size:60 final size:59
Alignment explanation
Indices: 22456434--22456548 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 59
22456424 GGTGCTAGGT
* *
22456434 AGCCCAAAATTTTAAAACATTATTGATCGGCCCAATAAAATTTTTAAA-CATTATTAAATC
1 AGCCCAAAATTTTAAAACACTATTAATCGGCCCAATAAAA--TTTAAACCATTATTAAATC
* *
22456494 AGCCCAAAATTTTAAACCACTATTAATCGGCCCAATAAGATTTAAACCATTATTA
1 AGCCCAAAATTTTAAAACACTATTAATCGGCCCAATAAAATTTAAACCATTATTA
22456549 GATAGATCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 6 0.12
59 8 0.16
60 36 0.72
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (59 bp):
AGCCCAAAATTTTAAAACACTATTAATCGGCCCAATAAAATTTAAACCATTATTAAATC
Found at i:22456539 original size:30 final size:29
Alignment explanation
Indices: 22456435--22456548 Score: 108
Period size: 28 Copynumber: 3.9 Consensus size: 29
22456425 GTGCTAGGTA
* * *
22456435 GCCCAA-AATTTTAAAACATTATTGATCG
1 GCCCAATAAATTTAAACCATTATTAATCG
*
22456463 GCCCAATAAAATTTTTAAA-CATTATTAAATCA
1 GCCCAAT-AAA--TTTAAACCATTATT-AATCG
* *
22456495 GCCCAA-AATTTTAAACCACTATTAATCG
1 GCCCAATAAATTTAAACCATTATTAATCG
22456523 GCCCAATAAGATTTAAACCATTATTA
1 GCCCAATAA-ATTTAAACCATTATTA
22456549 GATAGATCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
28 22 0.31
29 8 0.11
30 18 0.26
31 7 0.10
32 15 0.21
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (29 bp):
GCCCAATAAATTTAAACCATTATTAATCG
Found at i:22456568 original size:31 final size:29
Alignment explanation
Indices: 22456433--22456570 Score: 97
Period size: 31 Copynumber: 4.7 Consensus size: 29
22456423 TGGTGCTAGG
* *
22456433 TAGCCCAA-AAT-TTTAAAACATTATTGA
1 TAGCCCAATAATATTTAAACCATTATTAA
* *
22456460 TCGGCCCAATAAAATTTTTAAA-CATTATTAAA
1 T-AGCCCAAT--AATATTTAAACCATTATT-AA
*
22456492 TCAGCCCAA-AAT-TTTAAACCACTATTAA
1 T-AGCCCAATAATATTTAAACCATTATTAA
* *
22456520 TCGGCCCAATAAGATTTAAACCATTATTAGA
1 T-AGCCCAATAATATTTAAACCATTATTA-A
*
22456551 TAGATCCAATAATATTTAAA
1 TAG-CCCAATAATATTTAAA
22456571 TGGAACATTC
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
27 1 0.01
28 22 0.24
29 11 0.12
30 15 0.17
31 26 0.29
32 15 0.17
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.32
Consensus pattern (29 bp):
TAGCCCAATAATATTTAAACCATTATTAA
Found at i:22456969 original size:138 final size:137
Alignment explanation
Indices: 22456714--22456985 Score: 438
Period size: 138 Copynumber: 2.0 Consensus size: 137
22456704 TCTATGACCA
22456714 ATGGTCTCGCTGAGGATGGTGCAATGGCCTTTGGCACAAGTCAAGCTGTTGGACACGCAAATTAT
1 ATGGTCTCGCTGAGGATGGTGCAATGGCCTTTGGCACAAGTCAAGCTGTTGGACACGCAAATTAT
*
22456779 TACAACAGCCGTACTGAAAGGCTTAGCTTGGACTCGATTCAAAGGCCACCCACTCCATATGCGGA
66 TACAACAGCCGTACTGAAAGGCTCAGCTTGGACTCGATTCAAA-GCCACCCACTCCATATGCGGA
22456844 AGTATTCT
130 AGTATTCT
* *
22456852 ATGGTCTCGCTGAGGATGGTTCAATGGCCTTTGGCACAAGTCAAGCTGTTGGAGACGCAAATTAT
1 ATGGTCTCGCTGAGGATGGTGCAATGGCCTTTGGCACAAGTCAAGCTGTTGGACACGCAAATTAT
* * * *
22456917 TACAAGAGTCGTACTGAAAGGCTCAGCTTGGACTTGATTCTAGAA-CCCCCCACTCCATATGCGG
66 TACAACAGCCGTACTGAAAGGCTCAGCTTGGACTCGATTC-A-AAGCCACCCACTCCATATGCGG
*
22456981 GAGTA
129 AAGTA
22456986 GTGAATTTAG
Statistics
Matches: 124, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
138 121 0.98
139 1 0.01
140 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (137 bp):
ATGGTCTCGCTGAGGATGGTGCAATGGCCTTTGGCACAAGTCAAGCTGTTGGACACGCAAATTAT
TACAACAGCCGTACTGAAAGGCTCAGCTTGGACTCGATTCAAAGCCACCCACTCCATATGCGGAA
GTATTCT
Found at i:22457878 original size:2 final size:2
Alignment explanation
Indices: 22457871--22457920 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
22457861 ACCTCTCCCC
* * * * *
22457871 AT AT AT AT AT AC AA AT AT AT AA AT AT AT AA AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22457913 AT AT AT AT
1 AT AT AT AT
22457921 TTTTTTGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (2 bp):
AT
Found at i:22457914 original size:16 final size:16
Alignment explanation
Indices: 22457871--22457920 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
22457861 ACCTCTCCCC
*
22457871 ATATATATATACAAAT
1 ATATATATATATAAAT
*
22457887 ATATAAATATATAAAT
1 ATATATATATATAAAT
* *
22457903 GTATATATATATATAT
1 ATATATATATATAAAT
22457919 AT
1 AT
22457921 TTTTTTGTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
ATATATATATATAAAT
Found at i:22458373 original size:3 final size:3
Alignment explanation
Indices: 22458365--22458404 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
22458355 AGTAATAGCT
22458365 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGCA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA
22458405 GCTACAAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:22459427 original size:42 final size:43
Alignment explanation
Indices: 22459380--22459465 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
22459370 GGGGTAGGTG
* * *
22459380 ATTATTCAAGGCATTTTTGAGTAAAAACATCTTGAATAA-CCA
1 ATTATTCAAAGCATTTCTGAGTAAAAACATCTTCAATAATCCA
* * *
22459422 ATTATTCAAAGCGTTTCTGATTAAAAATATCTTCAATAATCCA
1 ATTATTCAAAGCATTTCTGAGTAAAAACATCTTCAATAATCCA
22459465 A
1 A
22459466 AAAAAATTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 33 0.89
43 4 0.11
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (43 bp):
ATTATTCAAAGCATTTCTGAGTAAAAACATCTTCAATAATCCA
Found at i:22460108 original size:33 final size:33
Alignment explanation
Indices: 22460063--22460168 Score: 113
Period size: 33 Copynumber: 3.2 Consensus size: 33
22460053 AGTTTAGCGA
* * *
22460063 TATTTATGTCTACAAAAGCCACTAAATTAATGG
1 TATTTGTGTCTACAAACGCCACTAAATTAGTGG
* * ** * *
22460096 TATTTGTTTCTACAAACGTCGTTAAGTTAGTGA
1 TATTTGTGTCTACAAACGCCACTAAATTAGTGG
* *
22460129 CATTTGTGTCTACAAACGCCACTAATTTAGTGG
1 TATTTGTGTCTACAAACGCCACTAAATTAGTGG
22460162 TATTTGT
1 TATTTGT
22460169 ATGTTAAAAT
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (33 bp):
TATTTGTGTCTACAAACGCCACTAAATTAGTGG
Found at i:22463327 original size:13 final size:13
Alignment explanation
Indices: 22463309--22463346 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22463299 GCCACCAGTC
22463309 TTTTTTTTTATT-
1 TTTTTTTTTATTG
22463321 TTTTTTTGTTATTG
1 TTTTTTT-TTATTG
*
22463335 TATTTTTTTATT
1 TTTTTTTTTATT
22463347 ATCGTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 7 0.30
13 10 0.43
14 6 0.26
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTATTG
Found at i:22463342 original size:16 final size:16
Alignment explanation
Indices: 22463321--22463355 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22463311 TTTTTTTATT
* *
22463321 TTTTTTTGTTATTGTA
1 TTTTTTTATTATCGTA
22463337 TTTTTTTATTATCGTA
1 TTTTTTTATTATCGTA
22463353 TTT
1 TTT
22463356 AATAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTTTTTATTATCGTA
Found at i:22465199 original size:12 final size:13
Alignment explanation
Indices: 22465173--22465201 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22465163 AAAATAGAGA
22465173 TTTAGTGGCTATT
1 TTTAGTGGCTATT
22465186 TTTAGTGG-TATT
1 TTTAGTGGCTATT
22465198 TTTA
1 TTTA
22465202 AATAAACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.17, C:0.03, G:0.21, T:0.59
Consensus pattern (13 bp):
TTTAGTGGCTATT
Found at i:22466169 original size:62 final size:61
Alignment explanation
Indices: 22466037--22466172 Score: 157
Period size: 62 Copynumber: 2.2 Consensus size: 61
22466027 AAATTAGAGG
* * * *
22466037 GAATTATTCAAGGTATTTTTGGTGAAAAATGCCTTTAATAATCCCATTTAATTTTTATAAA
1 GAATTATTCAAGGTATTTTTGGTCAAAAATGCCTTTAATAACCCCATTCAACTTTTATAAA
* * * * *
22466098 GAGACTATTCAATGTATTTTTTGTCAAAAA-GGCTTTGAATAACCCCATTCAACTTTTATTAGA
1 GA-ATTATTCAAGGTATTTTTGGTCAAAAATGCCTTT-AATAACCCCATTCAACTTTTA-TAAA
22466161 GAATTATTCAAG
1 GAATTATTCAAG
22466173 ACATTTCTGG
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
61 7 0.11
62 49 0.80
63 5 0.08
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (61 bp):
GAATTATTCAAGGTATTTTTGGTCAAAAATGCCTTTAATAACCCCATTCAACTTTTATAAA
Found at i:22466978 original size:34 final size:34
Alignment explanation
Indices: 22466934--22467003 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
22466924 TTCTTGTATT
*
22466934 TTGGGTCAAAT-TCCTAAACTTTC-TATCTGATTTG
1 TTGGATCAAATCT-CTAAAC-TTCATATCTGATTTG
*
22466968 TTGGATCAAATCTCTAAACTTCATGTCTGATTTG
1 TTGGATCAAATCTCTAAACTTCATATCTGATTTG
22467002 TT
1 TT
22467004 ACATTTCTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 3 0.09
34 28 0.88
35 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.44
Consensus pattern (34 bp):
TTGGATCAAATCTCTAAACTTCATATCTGATTTG
Found at i:22475137 original size:21 final size:22
Alignment explanation
Indices: 22475111--22475155 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
22475101 TTCTACGAGC
* *
22475111 GATATCGCTCGATC-GACAAAG
1 GATATCGCTCCATCAAACAAAG
22475132 GATATCGCTCCATCAAACAAAG
1 GATATCGCTCCATCAAACAAAG
22475154 GA
1 GA
22475156 CAAAAAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (22 bp):
GATATCGCTCCATCAAACAAAG
Found at i:22475274 original size:2 final size:2
Alignment explanation
Indices: 22475222--22475257 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22475212 AACTATGTGT
22475222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22475258 ATTTATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22480108 original size:2 final size:2
Alignment explanation
Indices: 22480096--22480124 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
22480086 CAAAGCTTGA
22480096 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22480125 TTCTGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22483408 original size:24 final size:26
Alignment explanation
Indices: 22483381--22483428 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
22483371 AATAAATTGT
*
22483381 TTCACTAAATAA-AAA-AGTGACTAA
1 TTCACTAAAAAACAAATAGTGACTAA
*
22483405 TTCATTAAAAAACAAATAGTGACT
1 TTCACTAAAAAACAAATAGTGACT
22483429 GGATATCGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.50
25 3 0.15
26 7 0.35
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.27
Consensus pattern (26 bp):
TTCACTAAAAAACAAATAGTGACTAA
Found at i:22483976 original size:26 final size:28
Alignment explanation
Indices: 22483947--22484019 Score: 69
Period size: 31 Copynumber: 2.5 Consensus size: 28
22483937 AATTTAATAT
22483947 TATATTAAATATTTCAT-TATAAT-TTA
1 TATATTAAATATTTCATATATAATATTA
* *
22483973 TATAATAAATCATTCGTAATATATAATATTA
1 TATATTAAAT-ATT--TCATATATAATATTA
*
22484004 TATATATATATATTTC
1 TATAT-TAAATATTTC
22484020 TTCTCAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
26 9 0.25
27 3 0.08
29 4 0.11
30 6 0.17
31 10 0.28
32 4 0.11
ACGTcount: A:0.44, C:0.05, G:0.01, T:0.49
Consensus pattern (28 bp):
TATATTAAATATTTCATATATAATATTA
Found at i:22488385 original size:48 final size:48
Alignment explanation
Indices: 22488282--22488463 Score: 277
Period size: 48 Copynumber: 3.9 Consensus size: 48
22488272 AAAAAGACTT
*
22488282 CTCCTCTCAGCAGAGGCCCTCAACGAA-TTTAAAA-ATCATCTTGAAAAAG
1 CTCCTCTCAGCAGAGG--CTCAAC-AACTTTAAAATCTCATCTTGAAAAAG
*
22488331 GT-CTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAG
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAG
22488378 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCA---TGAAAAAG
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAG
22488423 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTT
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTT
22488464 TTCTCAAAAC
Statistics
Matches: 124, Mismatches: 3, Indels: 13
0.89 0.02 0.09
Matches are distributed among these distances:
45 47 0.38
46 13 0.10
47 15 0.12
48 48 0.39
49 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (48 bp):
CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAG
Found at i:22488434 original size:45 final size:45
Alignment explanation
Indices: 22488282--22488460 Score: 254
Period size: 45 Copynumber: 3.8 Consensus size: 45
22488272 AAAAAGACTT
*
22488282 CTCCTCTCAGCAGAGGCCCTCAACGAA-TTTAAAAATCATCTTGAAAAAG
1 CTCCTCTCAGCAGAGG--CTCAAC-AACTTT-AAAATC-TCATGAAAAAG
*
22488331 GT-CTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAG
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCA---TGAAAAAG
22488378 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATGAAAAAG
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATGAAAAAG
22488423 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCAT
1 CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCAT
22488461 CTTTTCTCAA
Statistics
Matches: 122, Mismatches: 3, Indels: 14
0.88 0.02 0.10
Matches are distributed among these distances:
44 2 0.02
45 54 0.44
46 9 0.07
47 9 0.07
48 47 0.39
49 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (45 bp):
CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATGAAAAAG
Found at i:22488436 original size:93 final size:95
Alignment explanation
Indices: 22488282--22488463 Score: 291
Period size: 93 Copynumber: 1.9 Consensus size: 95
22488272 AAAAAGACTT
* *
22488282 CTCCTCTCAGCAGAGGCCCTCAACGAATTTAAAAATCATCTTGAAAAAGGTCTCTCAGCAGAGGC
1 CTCCTCTCAGCAGAGG-CCTCAACGAATTTAAAAATCATCATGAAAAAGCTCTCTCAGCAGAGGC
22488347 TCAACAACTTTAAAATCTCATCTTGAAAAAG
65 TCAACAACTTTAAAATCTCATCTTGAAAAAG
22488378 CTCCTCTCAGCAGAGG-CTCAAC-AACTTT-AAAATC-TCATGAAAAAGCTCCTCTCAGCAGAGG
1 CTCCTCTCAGCAGAGGCCTCAACGAA-TTTAAAAATCATCATGAAAAAGCT-CTCTCAGCAGAGG
22488439 CTCAACAACTTTAAAATCTCATCTT
64 CTCAACAACTTTAAAATCTCATCTT
22488464 TTCTCAAAAC
Statistics
Matches: 82, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
92 11 0.13
93 46 0.56
94 9 0.11
96 16 0.20
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (95 bp):
CTCCTCTCAGCAGAGGCCTCAACGAATTTAAAAATCATCATGAAAAAGCTCTCTCAGCAGAGGCT
CAACAACTTTAAAATCTCATCTTGAAAAAG
Found at i:22498172 original size:142 final size:142
Alignment explanation
Indices: 22497907--22498185 Score: 477
Period size: 142 Copynumber: 2.0 Consensus size: 142
22497897 TCATCCCCAG
*
22497907 AAGCCTTCATAAGAAAAAGACCCATTCTTCCTTAGTCTTTAATGTCAGCCATTAGCTTTTATAAA
1 AAGCCTTCATAAGAAAAAGACCCATTCTTCCTTAGTCTTTAATGTCAGCCATTAGCTTTTACAAA
* *
22497972 ACTCTTCGATTGATGCCTTATTTCGAAGATATGGTTTAAAAAATGTACTCTTCCCACACTTGAAA
66 ACTCTTCGATTGATGCCTTATTTCGAAGATATGGTTGAAAAAATGCACTCTTCCCACACTTGAAA
22498037 AGACTTCCCAAT
131 AGACTTCCCAAT
* *
22498049 AAGCTTTCGTAAGAAAAAGACCCATTCTTCCTTAGTCTTTAATGTCAGCCATTAGCTTTTACAAA
1 AAGCCTTCATAAGAAAAAGACCCATTCTTCCTTAGTCTTTAATGTCAGCCATTAGCTTTTACAAA
* * * *
22498114 ACTCTTCGATTGATGCCTTATTTTGAAGATATGGTTGAGAAAATGCATTTTTCCCACACTTGAAA
66 ACTCTTCGATTGATGCCTTATTTCGAAGATATGGTTGAAAAAATGCACTCTTCCCACACTTGAAA
22498179 AGACTTC
131 AGACTTC
22498186 TAACCTATAC
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 128 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (142 bp):
AAGCCTTCATAAGAAAAAGACCCATTCTTCCTTAGTCTTTAATGTCAGCCATTAGCTTTTACAAA
ACTCTTCGATTGATGCCTTATTTCGAAGATATGGTTGAAAAAATGCACTCTTCCCACACTTGAAA
AGACTTCCCAAT
Found at i:22499626 original size:10 final size:9
Alignment explanation
Indices: 22499598--22499641 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
22499588 TGTGTGTGAA
*
22499598 TTTTTTTGC
1 TTTTTTTGT
*
22499607 TTTTTATGT
1 TTTTTTTGT
22499616 TTTTATTTGT
1 TTTT-TTTGT
22499626 TTTGTTTTGT
1 TTT-TTTTGT
22499636 TTTTTT
1 TTTTTT
22499642 GACCTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 14 0.47
10 15 0.50
11 1 0.03
ACGTcount: A:0.05, C:0.02, G:0.11, T:0.82
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:22500772 original size:13 final size:13
Alignment explanation
Indices: 22500738--22500782 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
22500728 TATTATTATT
22500738 AAATTTATTTTTA
1 AAATTTATTTTTA
* *
22500751 TATTATTATTTTTA
1 AAAT-TTATTTTTA
*
22500765 AAATTTATTTTAA
1 AAATTTATTTTTA
22500778 AAATT
1 AAATT
22500783 AACAAAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AAATTTATTTTTA
Found at i:22501898 original size:7 final size:7
Alignment explanation
Indices: 22501888--22501985 Score: 60
Period size: 7 Copynumber: 13.6 Consensus size: 7
22501878 TTTCTATTTT
22501888 TTTTGTA
1 TTTTGTA
* *
22501895 TTTTTTG
1 TTTTGTA
*
22501902 TTTTATA
1 TTTTGTA
22501909 TTTTG--
1 TTTTGTA
22501914 TTTTGTA
1 TTTTGTA
22501921 TTTTGTA
1 TTTTGTA
22501928 TTTTTTGGTAA
1 --TTTT-GT-A
22501939 TTTT-T-
1 TTTTGTA
*
22501944 TATTGTA
1 TTTTGTA
*
22501951 TTTCGTA
1 TTTTGTA
22501958 TTTTGTA
1 TTTTGTA
22501965 TTTATATGTA
1 -TT-T-TGTA
22501975 TTTTGTA
1 TTTTGTA
22501982 TTTT
1 TTTT
22501986 TGGACAAATT
Statistics
Matches: 71, Mismatches: 9, Indels: 22
0.70 0.09 0.22
Matches are distributed among these distances:
5 8 0.11
6 1 0.01
7 41 0.58
8 3 0.04
9 11 0.15
10 6 0.08
11 1 0.01
ACGTcount: A:0.15, C:0.01, G:0.12, T:0.71
Consensus pattern (7 bp):
TTTTGTA
Found at i:22501898 original size:25 final size:26
Alignment explanation
Indices: 22501870--22501924 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
22501860 CCTCGATTTT
*
22501870 TTTTTTGTTTTCTATTTT-TTTTGTA
1 TTTTTTGTTTTATATTTTGTTTTGTA
22501895 TTTTTTGTTTTATATTTTGTTTTGTA
1 TTTTTTGTTTTATATTTTGTTTTGTA
22501921 TTTT
1 TTTT
22501925 GTATTTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.09, C:0.02, G:0.09, T:0.80
Consensus pattern (26 bp):
TTTTTTGTTTTATATTTTGTTTTGTA
Found at i:22501917 original size:19 final size:19
Alignment explanation
Indices: 22501872--22501931 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
22501862 TCGATTTTTT
*
22501872 TTTTGTTTTCTATTTT-T-
1 TTTTGTTTTGTATTTTATA
* * *
22501889 TTTGTATTTTTTGTTTTATA
1 TTT-TGTTTTGTATTTTATA
*
22501909 TTTTGTTTTGTATTTTGTA
1 TTTTGTTTTGTATTTTATA
22501928 TTTT
1 TTTT
22501932 TTGGTAATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.09
18 10 0.30
19 17 0.52
20 3 0.09
ACGTcount: A:0.10, C:0.02, G:0.10, T:0.78
Consensus pattern (19 bp):
TTTTGTTTTGTATTTTATA
Found at i:22501925 original size:12 final size:12
Alignment explanation
Indices: 22501872--22501926 Score: 67
Period size: 12 Copynumber: 4.5 Consensus size: 12
22501862 TCGATTTTTT
*
22501872 TTTTGTTTTCTA
1 TTTTGTTTTGTA
22501884 TTTT-TTTTGTA
1 TTTTGTTTTGTA
*
22501895 TTTTTTGTTTTATA
1 --TTTTGTTTTGTA
22501909 TTTTGTTTTGTA
1 TTTTGTTTTGTA
22501921 TTTTGT
1 TTTTGT
22501927 ATTTTTTGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
11 6 0.16
12 21 0.57
13 4 0.11
14 6 0.16
ACGTcount: A:0.09, C:0.02, G:0.11, T:0.78
Consensus pattern (12 bp):
TTTTGTTTTGTA
Found at i:22501931 original size:26 final size:25
Alignment explanation
Indices: 22501877--22501985 Score: 85
Period size: 30 Copynumber: 4.2 Consensus size: 25
22501867 TTTTTTTTTG
* * *
22501877 TTTTCTATTTTTTTTGTATTTTTTG
1 TTTTATATTTTTTTTGTATTTTGTA
22501902 TTTTATATTTTGTTTTGTATTTTGTA
1 TTTTATATTTT-TTTTGTATTTTGTA
* *
22501928 TTTTTTGGTAATTTTTTATTGTATTTCGTA
1 --TTTT-AT-ATTTTTT-TTGTATTTTGTA
* * *
22501958 TTTTGTA-TTTATATGTATTTTGTA
1 TTTTATATTTTTTTTGTATTTTGTA
22501982 TTTT
1 TTTT
22501986 TGGACAAATT
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
24 14 0.20
25 14 0.20
26 13 0.19
27 2 0.03
28 8 0.11
29 3 0.04
30 16 0.23
ACGTcount: A:0.15, C:0.02, G:0.11, T:0.72
Consensus pattern (25 bp):
TTTTATATTTTTTTTGTATTTTGTA
Found at i:22501950 original size:30 final size:32
Alignment explanation
Indices: 22501888--22501961 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 32
22501878 TTTCTATTTT
*
22501888 TTTTGTATTTTTTGTTTTATATTTTGTTTTGTA
1 TTTTGTATTTTTTG-TGTATATTTTGTTTTGTA
22501921 TTTTGTATTTTTTG-GTA-ATTTT-TTATTGTA
1 TTTTGTATTTTTTGTGTATATTTTGTT-TTGTA
*
22501951 TTTCGTATTTT
1 TTTTGTATTTT
22501962 GTATTTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
29 2 0.05
30 20 0.53
31 2 0.05
33 14 0.37
ACGTcount: A:0.14, C:0.01, G:0.12, T:0.73
Consensus pattern (32 bp):
TTTTGTATTTTTTGTGTATATTTTGTTTTGTA
Found at i:22502423 original size:163 final size:163
Alignment explanation
Indices: 22502231--22502560 Score: 581
Period size: 163 Copynumber: 2.0 Consensus size: 163
22502221 CCGCTAATAT
22502231 CAAGTCTTAAGTGACGTTTATAAATAACGTCGCTATTTGAATATTTAGTGACGTTTTGATAATAA
1 CAAGTCTTAAGTGACGTTTATAAATAACGTCGCTATTTGAATATTTAGTGACGTTTTGATAATAA
* * *
22502296 ATACCTTAAGTTTTATAAAAACA-TGAAAGCTAACAGTATCTGTAAGTGAAATACTATTACAAAA
66 ACACCTTAAGTTTTATAAAAACACT-AAAACTAACAGTATCTGTAAGTGAAATACTACTACAAAA
*
22502360 CTGTCACTAATCTTTCATTTTCTTGTAGTGACAC
130 CTGTCACTAATCTTTCATTTTCATGTAGTGACAC
* *
22502394 CAAGTCTTGAGTGACGTTTATAAATAACGTCGCTATTTGAATATTTAGTGGCGTTTTGATAATAA
1 CAAGTCTTAAGTGACGTTTATAAATAACGTCGCTATTTGAATATTTAGTGACGTTTTGATAATAA
*
22502459 ACACCTTAAGTTTTATAAAAACACTAAAACTAACAGTATCTGTAAGTGAAATACTACTACAAAAT
66 ACACCTTAAGTTTTATAAAAACACTAAAACTAACAGTATCTGTAAGTGAAATACTACTACAAAAC
22502524 TGTCACTAATCTTTCATTTTCATGTAGTGACAC
131 TGTCACTAATCTTTCATTTTCATGTAGTGACAC
22502557 CAAG
1 CAAG
22502561 GTAATATAAA
Statistics
Matches: 159, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
163 158 0.99
164 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (163 bp):
CAAGTCTTAAGTGACGTTTATAAATAACGTCGCTATTTGAATATTTAGTGACGTTTTGATAATAA
ACACCTTAAGTTTTATAAAAACACTAAAACTAACAGTATCTGTAAGTGAAATACTACTACAAAAC
TGTCACTAATCTTTCATTTTCATGTAGTGACAC
Found at i:22503840 original size:2 final size:2
Alignment explanation
Indices: 22503833--22503870 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
22503823 CTACATAATC
22503833 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT -T AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22503871 ACATACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 30 0.91
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22506226 original size:64 final size:66
Alignment explanation
Indices: 22506110--22506232 Score: 153
Period size: 65 Copynumber: 1.9 Consensus size: 66
22506100 ATTTTTAAAT
** *** *
22506110 ATTATTGAAGGTATTTTTTATCAAAAAACACTTTCAATAATTTTCTTAAT-AAATTTTTATGAGG
1 ATTATTGAAGACATTTTTTATCAAAAAACACTTTCAATAATCCCCTCAATAAAATTTTTATGAGG
22506174 G
66 G
*
22506175 ATTATTGAAGACATTTTTTATCAAAAATACA-TTT-GATAATCCCCTCAATAAAATTTTT
1 ATTATTGAAGACATTTTTTATCAAAAA-ACACTTTCAATAATCCCCTCAATAAAATTTTT
22506233 TGTATAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
64 10 0.20
65 36 0.73
66 3 0.06
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (66 bp):
ATTATTGAAGACATTTTTTATCAAAAAACACTTTCAATAATCCCCTCAATAAAATTTTTATGAGG
G
Found at i:22508254 original size:5 final size:5
Alignment explanation
Indices: 22508244--22508285 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
22508234 TGGATTAATT
*
22508244 TTAAA TTAAA TT-AT TTAAA CTT-AA TTAAA TTAAA TTAAA TTA
1 TTAAA TTAAA TTAAA TTAAA -TTAAA TTAAA TTAAA TTAAA TTA
22508286 TTTTATTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 5 0.16
5 25 0.78
6 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (5 bp):
TTAAA
Found at i:22508681 original size:4 final size:4
Alignment explanation
Indices: 22508661--22508700 Score: 64
Period size: 4 Copynumber: 10.0 Consensus size: 4
22508651 ATCCAATCAA
22508661 AATT AATTT AATT -ATT AATT AATT AATT AATT AATT AATT
1 AATT AA-TT AATT AATT AATT AATT AATT AATT AATT AATT
22508701 TATTGTACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 27 0.79
5 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
AATT
Found at i:22509564 original size:22 final size:22
Alignment explanation
Indices: 22509539--22509601 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 22
22509529 GTTTTAGTAT
22509539 TATTATTATTT-TTTCTATTTTC
1 TATTATT-TTTCTTTCTATTTTC
22509561 TATTATTTTTCTTTCT-TTTT-
1 TATTATTTTTCTTTCTATTTTC
* *
22509581 T-TTCTCTTTCTTTCT-TTTTC
1 TATTATTTTTCTTTCTATTTTC
22509601 T
1 T
22509602 TTCTTCTTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 16 0.43
20 2 0.05
21 7 0.19
22 12 0.32
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (22 bp):
TATTATTTTTCTTTCTATTTTC
Found at i:22509575 original size:15 final size:14
Alignment explanation
Indices: 22509557--22509606 Score: 64
Period size: 15 Copynumber: 3.4 Consensus size: 14
22509547 TTTTTTCTAT
22509557 TTTCTATTATTTTTC
1 TTTCT-TTATTTTTC
*
22509572 TTTCTTTTTTTTCTC
1 TTTCTTTATTTT-TC
*
22509587 TTTCTTTCTTTTTC
1 TTTCTTTATTTTTC
22509601 TTTCTT
1 TTTCTT
22509607 CTTCTTCCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTCTTTATTTTTC
Found at i:22509579 original size:10 final size:10
Alignment explanation
Indices: 22509550--22509612 Score: 74
Period size: 10 Copynumber: 6.2 Consensus size: 10
22509540 ATTATTATTT
22509550 TTTCTATTTTC
1 TTTCT-TTTTC
*
22509561 TATTATTTTTC
1 T-TTCTTTTTC
22509572 TTTCTTTTT-
1 TTTCTTTTTC
*
22509581 TTTCTCTTTC
1 TTTCTTTTTC
22509591 TTTCTTTTTC
1 TTTCTTTTTC
*
22509601 TTTCTTCTTC
1 TTTCTTTTTC
22509611 TT
1 TT
22509613 CCCCTTATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
9 8 0.18
10 27 0.60
11 7 0.16
12 3 0.07
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:22509592 original size:19 final size:20
Alignment explanation
Indices: 22509568--22509605 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
22509558 TTCTATTATT
22509568 TTTCTTTCTTTTT-TTTCTC
1 TTTCTTTCTTTTTCTTTCTC
22509587 TTTCTTTCTTTTTCTTTCT
1 TTTCTTTCTTTTTCTTTCT
22509606 TCTTCTTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTCTTTCTTTTTCTTTCTC
Found at i:22509598 original size:29 final size:31
Alignment explanation
Indices: 22509547--22509606 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 31
22509537 ATTATTATTA
*
22509547 TTTTTTCTATTTTCTATTATTTTTCTTTCTT
1 TTTTTTCTACTTTCTATTATTTTTCTTTCTT
*
22509578 TTTTTTCT-CTTTCT-TTCTTTTTCTTTCTT
1 TTTTTTCTACTTTCTATTATTTTTCTTTCTT
22509607 CTTCTTCCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 14 0.52
30 5 0.19
31 8 0.30
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (31 bp):
TTTTTTCTACTTTCTATTATTTTTCTTTCTT
Found at i:22510932 original size:18 final size:20
Alignment explanation
Indices: 22510899--22510935 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
22510889 TATAAAATAA
22510899 TAAAAAATTAATTAATATAT
1 TAAAAAATTAATTAATATAT
22510919 TAAAAAA-TAA-TAATATA
1 TAAAAAATTAATTAATATA
22510936 AATAAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 3 0.18
20 7 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAAAATTAATTAATATAT
Found at i:22527090 original size:23 final size:23
Alignment explanation
Indices: 22527056--22527101 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22527046 TTTCTTCTGC
22527056 TAACTGTGTTATATATATATATA
1 TAACTGTGTTATATATATATATA
* *
22527079 TAACTGAT-TTATTTATTTATATA
1 TAACTG-TGTTATATATATATATA
22527102 AATGCATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (23 bp):
TAACTGTGTTATATATATATATA
Found at i:22529655 original size:23 final size:23
Alignment explanation
Indices: 22529625--22529673 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
22529615 AAGTTGTTAA
22529625 AAAAATGCATATTTTAGAAACTC
1 AAAAATGCATATTTTAGAAACTC
*
22529648 AAAAATGCATTTTTTAGAAACTC
1 AAAAATGCATATTTTAGAAACTC
22529671 AAA
1 AAA
22529674 TTTAACCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (23 bp):
AAAAATGCATATTTTAGAAACTC
Found at i:22535535 original size:24 final size:26
Alignment explanation
Indices: 22535508--22535555 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
22535498 AATAAATTGT
*
22535508 TTCACTAAATAA-AAA-AGTGACTAA
1 TTCACTAAAAAACAAATAGTGACTAA
*
22535532 TTCATTAAAAAACAAATAGTGACT
1 TTCACTAAAAAACAAATAGTGACT
22535556 GGAAATCGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.50
25 3 0.15
26 7 0.35
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.27
Consensus pattern (26 bp):
TTCACTAAAAAACAAATAGTGACTAA
Found at i:22536055 original size:20 final size:21
Alignment explanation
Indices: 22536030--22536070 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22536020 ACATTAATTA
*
22536030 CAAA-TTTATAATTTAAATAT
1 CAAATTTTAAAATTTAAATAT
22536050 CAAATTTTAAAATTTAAATAT
1 CAAATTTTAAAATTTAAATAT
22536071 TATATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
CAAATTTTAAAATTTAAATAT
Found at i:22556509 original size:3 final size:3
Alignment explanation
Indices: 22556501--22556544 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
22556491 CGGGGCACCT
22556501 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
22556545 TGTTTTGTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22565112 original size:9 final size:9
Alignment explanation
Indices: 22565098--22565132 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
22565088 CAAAACCAAG
22565098 GTTTTAAAA
1 GTTTTAAAA
22565107 GTTTTAAAA
1 GTTTTAAAA
*
22565116 GTTTAAAAA
1 GTTTTAAAA
22565125 G-TTTAAAA
1 GTTTTAAAA
22565133 TACTATATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 6 0.25
9 18 0.75
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (9 bp):
GTTTTAAAA
Found at i:22565594 original size:24 final size:25
Alignment explanation
Indices: 22565562--22565609 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22565552 TAATAAAAAT
22565562 AATCGAATTT-TTATCAAATATAAG
1 AATCGAATTTATTATCAAATATAAG
* *
22565586 AATCGAATTTATTTTTAAATATAA
1 AATCGAATTTATTATCAAATATAA
22565610 TTAATCTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (25 bp):
AATCGAATTTATTATCAAATATAAG
Found at i:22565837 original size:17 final size:17
Alignment explanation
Indices: 22565815--22565848 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22565805 CTAGGAGGAA
*
22565815 GTTTGTGTTAAGCTGTC
1 GTTTGTATTAAGCTGTC
22565832 GTTTGTATTAAGCTGTC
1 GTTTGTATTAAGCTGTC
22565849 TGACAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.26, T:0.47
Consensus pattern (17 bp):
GTTTGTATTAAGCTGTC
Found at i:22566455 original size:20 final size:20
Alignment explanation
Indices: 22566417--22566455 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22566407 AATACAATAT
**
22566417 ATTTAAAATTAAATTTGATA
1 ATTTAAAATTAAAGATGATA
*
22566437 ATTTAAAATTCAAGATGAT
1 ATTTAAAATTAAAGATGAT
22566456 GATATAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (20 bp):
ATTTAAAATTAAAGATGATA
Found at i:22566534 original size:25 final size:25
Alignment explanation
Indices: 22566467--22566536 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
22566457 ATATAATATG
*
22566467 AAAA-TAATATAAATAAATAA--TTA
1 AAAATTAATA-AAATAAAAAATTTTA
** **
22566490 AAAATTAATATGATTTAAAATTTTA
1 AAAATTAATAAAATAAAAAATTTTA
22566515 AAAATTAATAAAATAAAAAATT
1 AAAATTAATAAAATAAAAAATT
22566537 ATATTATATA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
23 9 0.26
24 5 0.14
25 21 0.60
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (25 bp):
AAAATTAATAAAATAAAAAATTTTA
Found at i:22567437 original size:19 final size:19
Alignment explanation
Indices: 22567400--22567437 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22567390 ATTTTTTATA
*
22567400 TAATATTTTAATATGATTT
1 TAATATTTAAATATGATTT
22567419 TAATATATTAAATAT-ATTT
1 TAATAT-TTAAATATGATTT
22567438 AGGTATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TAATATTTAAATATGATTT
Found at i:22567488 original size:18 final size:19
Alignment explanation
Indices: 22567462--22567512 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
22567452 TATTTTATTT
*
22567462 TATAAAAAATTTAA-AAAA
1 TATATAAAATTTAATAAAA
**
22567480 TATATAAAAGCTAATAAAA
1 TATATAAAATTTAATAAAA
*
22567499 -ATATATAATTTAAT
1 TATATAAAATTTAAT
22567513 TTGATTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
TATATAAAATTTAATAAAA
Found at i:22570357 original size:19 final size:19
Alignment explanation
Indices: 22570329--22570382 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
22570319 TTGAGTTTGT
22570329 TTGAATTGAAAAGTTTGAA
1 TTGAATTGAAAAGTTTGAA
* *
22570348 TTGGATTGAAGAGTTTGAA
1 TTGAATTGAAAAGTTTGAA
*
22570367 TTGAACTGAAAA-TTTG
1 TTGAATTGAAAAGTTTG
22570383 GCGTTGAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 4 0.13
19 26 0.87
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (19 bp):
TTGAATTGAAAAGTTTGAA
Found at i:22570809 original size:19 final size:19
Alignment explanation
Indices: 22570762--22570797 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22570752 TTTAAATTTT
22570762 AAAAAAAAGAATGAGAAAA
1 AAAAAAAAGAATGAGAAAA
22570781 AAAAAAAAGAA-GAGAAA
1 AAAAAAAAGAATGAGAAA
22570798 GAAATAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (19 bp):
AAAAAAAAGAATGAGAAAA
Found at i:22571760 original size:15 final size:14
Alignment explanation
Indices: 22571726--22571758 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
22571716 CAAAATGGTG
22571726 AAAAATTTAGAAAT
1 AAAAATTTAGAAAT
22571740 AAAAATTGTA-AAAT
1 AAAAATT-TAGAAAT
22571754 AAAAA
1 AAAAA
22571759 ATAAATTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (14 bp):
AAAAATTTAGAAAT
Found at i:22587944 original size:27 final size:27
Alignment explanation
Indices: 22587896--22587948 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22587886 TTAAAATATG
22587896 ATATAAAAATATAACATAATATAAAAA
1 ATATAAAAATATAACATAATATAAAAA
* *
22587923 ATATATAAAA-ATAATATGATATAAAA
1 ATATA-AAAATATAACATAATATAAAA
22587949 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (27 bp):
ATATAAAAATATAACATAATATAAAAA
Found at i:22587968 original size:24 final size:24
Alignment explanation
Indices: 22587890--22587971 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
22587880 AATAATTTAA
*
22587890 AATATGATATAAAA-ATAT-AACAT
1 AATAT-ATATAAAATATATAAAAAT
22587913 AATATA-A-AAAATATATAAAAAT
1 AATATATATAAAATATATAAAAAT
* *
22587935 AATATGATATAAAAT-TTTAATAAT
1 AATAT-ATATAAAATATATAAAAAT
22587959 AATTATATATAAA
1 AA-TATATATAAA
22587972 TTTCATAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
20 4 0.08
21 5 0.10
22 10 0.20
23 6 0.12
24 17 0.34
25 8 0.16
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (24 bp):
AATATATATAAAATATATAAAAAT
Found at i:22587983 original size:24 final size:23
Alignment explanation
Indices: 22587890--22587984 Score: 65
Period size: 23 Copynumber: 4.1 Consensus size: 23
22587880 AATAATTTAA
* * *
22587890 AATATGATATAAAAATATAACAT
1 AATATGATATAAAATTTTAAAAT
*
22587913 AATAT-A-A-AAAATATATAAAAAT
1 AATATGATATAAAAT-T-TTAAAAT
22587935 AATATGATATAAAATTTTAATAAT
1 AATATGATATAAAATTTTAA-AAT
22587959 AAT-T-ATATATAAATTTCATAAAAT
1 AATATGATATA-AAATTT--TAAAAT
22587983 AA
1 AA
22587985 AAAAATATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
20 4 0.07
21 2 0.03
22 15 0.26
23 16 0.28
24 13 0.22
25 8 0.14
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
AATATGATATAAAATTTTAAAAT
Found at i:22588042 original size:22 final size:22
Alignment explanation
Indices: 22587987--22588044 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
22587977 TAAAATAAAA
*
22587987 AAAT-ATATTTTATATTTTTAT
1 AAATAATATTATATATTTTTAT
* *
22588008 AAATTATAATATATATTTTTAT
1 AAATAATATTATATATTTTTAT
22588030 ATAA-AATATTATATA
1 A-AATAATATTATATA
22588045 AATATATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 4 0.13
22 25 0.81
23 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AAATAATATTATATATTTTTAT
Found at i:22600533 original size:30 final size:29
Alignment explanation
Indices: 22600497--22600553 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 29
22600487 AAAGGGAGTA
22600497 TTTTTAAATATAATTTAGATAACTTTTTAT
1 TTTTTAAATATAATTTAGATAA-TTTTTAT
22600527 TTTTTAAATATAATTTAGATAATTTTT
1 TTTTTAAATATAATTTAGATAATTTTT
22600554 CTAAATGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (29 bp):
TTTTTAAATATAATTTAGATAATTTTTAT
Found at i:22606156 original size:2 final size:2
Alignment explanation
Indices: 22606149--22606179 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22606139 TAGTTATGGT
22606149 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22606180 GTATGTATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22611664 original size:18 final size:18
Alignment explanation
Indices: 22611630--22611664 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22611620 TAATTAGAAT
* *
22611630 TAATATATTTTATTAAAA
1 TAATATATATTAATAAAA
22611648 TAATATATATTAATAAA
1 TAATATATATTAATAAA
22611665 TGTTTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATATATATTAATAAAA
Found at i:22621307 original size:94 final size:94
Alignment explanation
Indices: 22621146--22621335 Score: 380
Period size: 94 Copynumber: 2.0 Consensus size: 94
22621136 CAACTTTATA
22621146 TCCATACCATGCGACAAAGTTGAAATGTGATCTATGTGATCTCTTTAGGAGACCTAAAGAAGACA
1 TCCATACCATGCGACAAAGTTGAAATGTGATCTATGTGATCTCTTTAGGAGACCTAAAGAAGACA
22621211 AAGTCCAAGATGAAGAGAATGCTATGAGG
66 AAGTCCAAGATGAAGAGAATGCTATGAGG
22621240 TCCATACCATGCGACAAAGTTGAAATGTGATCTATGTGATCTCTTTAGGAGACCTAAAGAAGACA
1 TCCATACCATGCGACAAAGTTGAAATGTGATCTATGTGATCTCTTTAGGAGACCTAAAGAAGACA
22621305 AAGTCCAAGATGAAGAGAATGCTATGAGG
66 AAGTCCAAGATGAAGAGAATGCTATGAGG
22621334 TC
1 TC
22621336 TCTAGAAGCA
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (94 bp):
TCCATACCATGCGACAAAGTTGAAATGTGATCTATGTGATCTCTTTAGGAGACCTAAAGAAGACA
AAGTCCAAGATGAAGAGAATGCTATGAGG
Found at i:22629120 original size:20 final size:22
Alignment explanation
Indices: 22629081--22629121 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
22629071 ATGAAAGACT
*
22629081 ATTATATTATAATTATTGAATA
1 ATTATATTATAATAATTGAATA
22629103 ATTA-ATTA-AATAATTGAAT
1 ATTATATTATAATAATTGAAT
22629122 TAATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 4 0.22
22 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (22 bp):
ATTATATTATAATAATTGAATA
Found at i:22629133 original size:16 final size:17
Alignment explanation
Indices: 22629102--22629140 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
22629092 ATTATTGAAT
*
22629102 AATTAATTAAATAATTG
1 AATTAATTAAAAAATTG
*
22629119 AATTAA-TAAAAAATTT
1 AATTAATTAAAAAATTG
22629135 AATTAA
1 AATTAA
22629141 AATTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
AATTAATTAAAAAATTG
Found at i:22629488 original size:13 final size:13
Alignment explanation
Indices: 22629442--22629498 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
22629432 TAGATTAATA
*
22629442 ATTTAAATATTAC
1 ATTTAAATATTAT
* * *
22629455 ATTAAAATTTTTTAA
1 ATTTAAA--TATTAT
22629470 ATTTAAATATTAT
1 ATTTAAATATTAT
*
22629483 ATTTAAATATTTT
1 ATTTAAATATTAT
22629496 ATT
1 ATT
22629499 ATAATTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
13 25 0.71
15 10 0.29
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTAAATATTAT
Found at i:22629540 original size:10 final size:10
Alignment explanation
Indices: 22629469--22629548 Score: 54
Period size: 10 Copynumber: 7.4 Consensus size: 10
22629459 AAATTTTTTA
22629469 AATTTAAATATT
1 AATTT-AATA-T
22629481 ATATTTAA-AT
1 A-ATTTAATAT
* *
22629491 ATTTTATTAT
1 AATTTAATAT
*
22629501 AATTTAAGAAT
1 AATTTAA-TAT
*
22629512 AATTTATGACAT
1 AATTTA--ATAT
22629524 CAATTTAATAT
1 -AATTTAATAT
22629535 AATTTAATAT
1 AATTTAATAT
22629545 AATT
1 AATT
22629549 ATATTTTTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
9 4 0.07
10 23 0.42
11 12 0.22
12 5 0.09
13 11 0.20
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (10 bp):
AATTTAATAT
Found at i:22631453 original size:31 final size:33
Alignment explanation
Indices: 22631392--22631458 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 33
22631382 ATATTATATA
* * *
22631392 TTTTTATAATTATATAAATTATAATTCATAATT
1 TTTTTATAATAATATAAATTATAATACATAAAT
22631425 TTTTTATAA-AATAT-AA-TATAAATACATAAAT
1 TTTTTATAATAATATAAATTAT-AATACATAAAT
22631456 TTT
1 TTT
22631459 AATATTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.10
31 14 0.47
32 4 0.13
33 9 0.30
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (33 bp):
TTTTTATAATAATATAAATTATAATACATAAAT
Found at i:22645799 original size:28 final size:29
Alignment explanation
Indices: 22645767--22645828 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 29
22645757 GAATATTCTC
* *
22645767 TAAAC-TACTATATAACTTTTAATCTTGG
1 TAAACATACCATATAACTTTTAATCTGGG
22645795 TAAACATTACCATATAACTTTTAATCTGGG
1 TAAACA-TACCATATAACTTTTAATCTGGG
22645825 TAAA
1 TAAA
22645829 ACATTGGCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 5 0.17
30 25 0.83
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.39
Consensus pattern (29 bp):
TAAACATACCATATAACTTTTAATCTGGG
Found at i:22645810 original size:30 final size:31
Alignment explanation
Indices: 22645776--22645833 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
22645766 CTAAACTACT
*
22645776 ATATAACTTTTAATCTTGGT-AAACATTACC
1 ATATAACTTTTAATCTGGGTAAAACATTACC
22645806 ATATAACTTTTAATCTGGGTAAAACATT
1 ATATAACTTTTAATCTGGGTAAAACATT
22645834 GGCCAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.40
Consensus pattern (31 bp):
ATATAACTTTTAATCTGGGTAAAACATTACC
Found at i:22651410 original size:30 final size:30
Alignment explanation
Indices: 22651374--22651432 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
22651364 ATGTTCAATC
* * *
22651374 GTATTAACATATTTGACCAATTATGAAATG
1 GTATTAACAAATTCGACCAATGATGAAATG
22651404 GTATTAACAAATTCGACCAATGATGAAAT
1 GTATTAACAAATTCGACCAATGATGAAAT
22651433 AATATTAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (30 bp):
GTATTAACAAATTCGACCAATGATGAAATG
Found at i:22651439 original size:30 final size:30
Alignment explanation
Indices: 22651375--22651439 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
22651365 TGTTCAATCG
* * * **
22651375 TATTAACATATTTGACCAATTATGAAATGG
1 TATTAACAAATTCGACCAATGATGAAATAA
22651405 TATTAACAAATTCGACCAATGATGAAATAA
1 TATTAACAAATTCGACCAATGATGAAATAA
22651435 TATTA
1 TATTA
22651440 GGATAATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (30 bp):
TATTAACAAATTCGACCAATGATGAAATAA
Found at i:22654986 original size:12 final size:12
Alignment explanation
Indices: 22654969--22655005 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
22654959 TAAGAGAAGA
*
22654969 GAGCCCAAGTAT
1 GAGCCCGAGTAT
22654981 GAGCCCGAGTAT
1 GAGCCCGAGTAT
22654993 GAGCCCGAGTAT
1 GAGCCCGAGTAT
22655005 G
1 G
22655006 TCGCCCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.32, T:0.16
Consensus pattern (12 bp):
GAGCCCGAGTAT
Done.