Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 13 of 129
Found at i:1936836 original size:26 final size:26
Alignment explanation
Indices: 1936797--1936849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1936787 CTGGTCTGAT
1936797 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
1936823 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCATATG
1936849 C
1 C
1936850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:1937706 original size:26 final size:26
Alignment explanation
Indices: 1937677--1937729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1937667 CTGGTCCGAT
1937677 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
1937703 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1937729 C
1 C
1937730 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1938608 original size:26 final size:26
Alignment explanation
Indices: 1938579--1938631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1938569 CTAGTCTGAT
*
1938579 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1938605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1938631 C
1 C
1938632 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1939510 original size:26 final size:26
Alignment explanation
Indices: 1939471--1939523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1939461 CTAGTCTGAT
*
1939471 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1939497 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1939523 C
1 C
1939524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1940312 original size:904 final size:901
Alignment explanation
Indices: 1926608--1942571 Score: 16109
Period size: 890 Copynumber: 17.7 Consensus size: 901
1926598 NNNNNNNNNN
* * *
1926608 TAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACACCCCCCCCG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCA
** * * * * * * * * *
1926673 GCCCATCCAATCGTCAGAACCCCAATGTCGGCGGTCAGGTTCTTCGACGATGCTTCGACGATGGT
65 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-
* * * *
1926738 GCCCCGATGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTT
128 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
1926803 GGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATG
193 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
1926868 CCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * *
1926933 CAGGGATCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTG-TTGCCGGAACCCTCGATCCAGTA
323 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTT-CCGCAACCCTCGGTCCGGTC
* *
1926997 TGATCTTAGA-TAGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-G-CGGGCGGA
387 TGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGG
* * *
1927058 CGGGCGGGCACTACGCCGTCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGT
451 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *** ** *
1927123 GGGTTTAGGCACATCATCATATTTCTATGTGCCAATGCCATTTAGATGGCTTGTAAATTTATACA
516 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
1927188 ATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
581 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * *
1927253 TTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGGAAAGAATTTT-GCCCCAAACT
646 TTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * ** *
1927316 TGGTAGACGTTATCCTTGT-GTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCAAAGTG
710 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
1927380 TATAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
775 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
1927445 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
840 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
1927507 TAGAGGGCAAATATAAGGGCCAAGTACCAG-ACCCATTGCACATCATGTGCG--CA------CA-
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * * *
1927562 CCCCCCCGATCGCCGGAACCCCCATGTCACCGGTCAAGTTCTCCAGTGATGCTCCGGTGATGGTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-G
* * ** * *
1927627 CCCTGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTCA
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * *
1927692 ATCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGC
194 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * ** * * * *
1927757 TTAATTCAAGCCACAAAACGAGCGTGCGGGTGCTCAAACAGCCAAAGGGGCAGGATGCGTAAGCC
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * *
1927822 GGGGATGGGTCGGGTCCCACTCTGCGTGCTGTCGATCCGGCTGCCACAACCCTTGATCCGGTC-G
324 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTG
* * *
1927886 AATCTTGGACTAGGAATG-A-TCCGTATGCCTAAGCCAACCGACGAAACG-A-G-CGGACGGGCG
389 -ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCG
* * * *
1927946 GGCGGGCACTACGTCCGGCCAAAAGAGAC-GGATGC-AAAGCCGTGGGATCGATAGAGTGGTATG
453 GGCGGGCACTACGT-CGGCC-AGAGAGACGGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAGG
* *
1928009 TGGG-TTAGGCACATCTTCATAGTTCTGCATTGCCAAT--CATTTTTATGGCTTGTAAATTCAGA
515 TGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
1928071 CCAATGGTCCCTTAAGCCTTGCATGGTG-AGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCA
579 -CAATGGTCCCTTAAGCCTT-CA-CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** ** * * *
1928135 CAATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTC-GAAACGAGTTTTGGCCCC
641 TGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCC
* * *
1928199 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAAT-AGCTAAAAACTCA
705 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
1928263 AAGTGTACAAGATTTTGTGGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTAC
770 AAGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
1928328 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
834 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
1928393 GGA
899 GGA
* * * * * *
1928396 TAAGAGGCCAATATAAGAGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCTCCGG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * *
1928461 CCCCCCCGATCGCCGAAACCCCAACGCCACCTGTCAGGTTCTCCGAC-A--AT---G-G-TGG-C
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGCC
** * * * *
1928517 CCGATAAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGAT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* **
1928582 CTAGT-TCGAT-TTCAGACTGGGAATGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATGC
196 CTGGTCT-GATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
1928645 CTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAACAGGCCAGAAGGGCGGGATACGTAAGCC
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * * **
1928710 AGGGATTGGCCGGGTCCCCCTTTGCTTGCTACCGATCCTGCTGCCGCAACCCTTGGTCCGGTCCA
324 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTG
*** * *
1928775 ATCTTAGACTGATTATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCA
389 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGA-CGGGCGGGCG
* * * *
1928840 GGTGAGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGG
453 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
1928905 GTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAAT
518 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
1928970 GGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
583 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * **
1929035 TGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTTT
648 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
1929100 TAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCACCTAAAAACTCGAAGTGTAC
713 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
**
1929165 AAGATTTTGTGAGGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAA
778 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
1929229 ACCTGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGACTTCTCGAGGTTTGATGAGGGA
843 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
1929287 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACGCCCACCCCC
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCA
* * ** * * * * *
1929352 GACCCCCCTATCATCGGAACCTCAATGCCGCCAGTGATGCTT-T--GACGA---T---G-G-T-G
65 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GGTTCTCCGGCGATGCTCCGGCGATGG
* * *
1929405 CCTCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** ** * * *
1929470 GTCCAGTCAAATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGGAATGAACTTCGTATGC
194 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
1929535 CTAAGTCAACCCATGAAACGAGCGTGCGGTTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCC
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
1929600 GGGGATCGGTCGGGTCCCCTTCTGTGTCCTGACGATCCTACTAT-CGCAACCCTCGGTCTGGTCC
324 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCCGCAACCCTCGGTCCGGTCT
* * * *
1929664 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GACGGGCGGGC
* * * * * * * * * *
1929729 GGGCGGGCACTACGCCAGCTAGAGAGACAGGATGTGCACGCCGTGGATCAATAAGGTGGTCGTTG
452 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1929794 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
517 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* ** * **
1929859 TGGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGACGACTTTTTTTTTATTTTTCACAATTT
582 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* *
1929924 TTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
647 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * *
1929989 GTAGACGTGATCCTTGTGTTTTTATTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
712 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
**
1930054 CAAGATTTTGTGATGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
777 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
1930119 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGAA
842 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
1930179 TAGGGGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCAG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * ** * *
1930244 CCCCCTCGATCGTCAGAACCCCAATACC-CATAGTCAGGTTCCCCGGTGATGCTCCGGCGATGGT
66 CCCCCCCGATCGCCGGAACCCCAATGCCGC-CGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-
* * * ** ** * *
1930308 GCCCC-AGTGAAGAGAAATGCGGAACCAATGCATGTTCGAGCCCAGCGTGTGCTGTCGCAACCCT
128 GCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
1930372 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
192 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *** *
1930437 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTAAGAAGCGCAAG
257 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * * * * * * *
1930502 ACGAGGATCGGTCGGGTCCCTCTCTGTGTTCTGTCAATCCTACTGCCGTAACCCTCTGTTCAGTC
322 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTC
** * *
1930567 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACG-A-G-CGGGC-GAC
387 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGC
* * * *
1930628 ---CGGGCACTACATCGGCCAAAGAAACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
452 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
1930690 GGTTTAGGCACATCTTCATATTTCTACATGCCAATG-CTTTTTTGTGGCTTGTAAATTCATACAA
517 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
1930754 CGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
582 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
1930819 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATG
647 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * * *
1930884 GTAGACTTGATGCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTA
712 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
1930949 CAACATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCA
777 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
1931014 AACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGAGTGA
842 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
** * * *
1931074 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACAGACCACACATCATGTGCGCACACCCCCCCGG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * *
1931139 CCCCCTCGATCGCCGGAACACCAATGCCGCTGGTCAGGTTCCCCGGTGATGCTCCGACGATGGTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-G
* *
1931204 CCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
1931269 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGC
194 GTCTGGTCTGATCTTAGACT-GG---G-A------ATG---A-AC------T---C--CGTATGC
* *
1931334 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGTGGGTGCTCAGCC
233 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * ** * * *
1931399 GGCCAAAGGGGCGGGAAGCGTAAGCCGGGGATTGACCGGGTCCCCCTCTACGTGCTGTCGATCTT
298 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * * * *
1931464 GCTACTGCAACCGTCTGTCTGGTCTAACCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
363 GCTTCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
1931529 TGACGAAACG-A--A----CGGGCGGTCGGGTACTACGTCGGCCAGAGAAATGGGATGCGCTAGC
428 CGACGAAACGAACGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
1931587 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
493 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
1931652 TTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGA
558 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * * * *
1931717 CTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTACGGTTCGGGATTTTTGAAAATTTTTTC-
623 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCA
* * *
1931781 GAAAGGAGTTTTAGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAC
688 G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
1931845 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTC-
752 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
**
1931909 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGACTTTAAGGGGGTGTGAGT
817 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
1931974 TCTCGAGGTTTGATGAGGTA
882 TCTCGAGGTTTGATGAGGGA
**
1931994 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * *
1932059 ACCCCTCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGA---T---G-G-T-GCC
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGCC
* * * * * *
1932115 CCGATGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGAT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
1932180 CTGATCCGATCTTAGAGTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
196 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** ** * * *
1932245 AAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAATCAACCAGAAGGGCGGGATGCGTAAACCGG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * * *
1932310 GGATCGATCGAGTTCCCCTCTGCATGCTACTGGTCCTGC-TGCGACAACCCTCGGTCTGGTCTGA
326 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCG-CAACCCTCGGTCCGGTCTGA
* * *
1932374 TCTTAGACTGGGAATGCACTCCATATGCTTAAGCCAACCGACG--A--AACGA-------GCGGG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCGGG
* *
1932428 CGGGCACTACG-CTGTC-GAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
455 CGGGCACTACGTCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
1932491 TTTGGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
519 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
1932556 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGACGACTCGTTTTCTATTTTTCATGATTTTT
584 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
1932621 -AAAGCTTTTTAG-TGTTCGAGATTTTTTCAATTTTTTTCGGAAGGTGTTTTGGCCCCAAACTTG
649 GAAA-CTTTTT-GCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
*
1932684 GTAGACGTGATCCTTGTATTTTTGTAGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAGTGT
712 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGT
* * *
1932748 ACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTATTGGCAGC
776 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
1932813 AAACCTATAAAATATCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGA
841 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
1932874 TAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCACACACCCCTCTCG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCA
* * * *
1932939 GCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCTGGCAATGGT
65 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-
* * **
1933004 GCCTCGACGAAGAAAAATGCGGCA-CAACACATGCCTGAGCCCAGCATGTGCTGCCATAACCCTC
128 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
1933068 GGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATG
193 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA---C---T-
* * * *
1933133 CTTAGACTAGGAATGAATTTTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGTGCTCAGT
251 C-----C--------------GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * * * ** ** * * * *
1933198 CTACCAGAAGGGCGGGATGCGTAAACCGAGGATCGACCAAGTTCCCCTCTGCGTGCTACTGGTCC
297 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
1933263 TACTGCCGCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGCACTCCATATGCTTAAGCCAA
362 TGCTTCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** ** * * * *
1933328 CCGACGAAACGAGCGGGTGGGTAGGCGGGCGAGCACTACGTCGTCGA-AGAGACGGGATGCACAA
427 CCGACGAAACGAAC-GACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
1933392 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGCATGCCAATGCCA
491 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
1933457 TTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGAC
556 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
1933522 GACTCGTTTTCTATTTTTCATGATTTTT-AAAGCTTTTTAG-TGTTCGAGATTTTTTCAAATTTT
621 GACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTT-GCGGTTCGAGATTTTTTAAAATTTT
*
1933585 TTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCAC-TGTATTTTTGTAGGCATGCAC
684 TTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCAC
*
1933648 AAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
747 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
1933713 TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTG
812 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
1933778 TGAGTTCTCAAGGTTTGATGAGGGA
877 TGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
1933803 TAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTTCACACACCCCTCCCG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCA
* * *
1933868 GCCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCAATGG
65 G-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G
* * * ** *
1933933 TGCCTCGACAAAGAAAAATGCGGCA-CAACACATACTTGAGCCCAGCATGTGCTGCCGTAACCCT
128 -GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * *
1933997 CGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGCAT
192 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * **
1934062 GCCTAAGTCAACCCACGAAACGAGCATGTGGGTGCTCAGCCGGCCAAAGGGTTGGGATGCGCAAG
257 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * * * *
1934127 CCGAGGATCGATCGGGTCCCGCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTCAGTCTGGTC
322 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTC
* *
1934192 TGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACG--A--AACGA---GCGGGC
387 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGC
* * *
1934250 GGGCAGGCACCACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGGGGTAGGT
452 GGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
1934314 GGGTTTAGGCACATCTTCATATGTT-TGCATGCCAATGCCATTTCTATGGCTTGTAAATTTGTAC
516 GGGTTTAGGCACATCTTCATAT-TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
1934378 AATGGTCCCTTAATCCTTCTCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
580 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
1934443 TTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTCTTCAGAAAGG-GTTTTAGCCCCAAAC
645 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAAC
*
1934507 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACT
709 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
1934572 GTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
774 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
1934637 GAAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGCGA
839 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
1934700 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAACATGTGCGCACACACGCCCCT
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-C-CCCC-
* * * * * * * *
1934765 CGGACCCCCCGATCGTCAGAACCCCAATTCCGCTGGCCAGGTTCTCCGACGATGCTCCGGCGATG
63 CAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-
* * *
1934830 GTGCCCTGACGAAGAAAAATGCGGCA-CAAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACC
127 G-GCCCCGACGAAGAAAAATGCGGCACCAA-CACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* **
1934894 CTCGGTCTGGTCTGTTCTTAGACTACGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
190 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
1934959 ATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCA----G-C-------C--GA--C-C-
255 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* *
1935006 A------G---GGT-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGG
320 AGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGG
* * * * * *
1935061 TCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCA
385 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GACGGGCG
* * * * ** * *
1935126 GGCGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCGTGAGCTGTGGATCGATAGTGTGGTAG
449 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
1935191 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTATGGCTTGTAAGTTCAGA
514 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
1935255 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
579 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
1935320 -TTTTCAAAGCCTTTTACGGTTTCG-GATTTTTTAAAATTTCTTCAGAAGGAGTTTTGGCCCCAA
644 TTTTTGAAA-CTTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* *
1935383 AGC-TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGA
707 A-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
1935447 AGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
771 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
1935512 GAAGCAAACCTATAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
836 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
1935577 A
901 A
* **
1935578 TAGGGGGCCAATATAAGGGCCACGTACCAGCACCCATCGCACATCATGTGCGCACA-CCAACC-G
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * * * * *
1935641 GCCCCCCGATCACCAGAACCCCAATGCCACCGATCAGGTTCTCCGGTGATGGTTCGACGATAGTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-G
* * * * *
1935706 CCCCAATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCC-CTAACCCTC
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC-AACCCTC
** *
1935770 GGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
193 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
1935835 CCTAAGTTAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * **
1935900 CGGGGATCGGTCGGGTCCCCCTATGTGTGCTGCCAATCCTACTACTGCAACCCTCAATCCGGTCT
323 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCT
* * *
1935965 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCG-CTGAAACGAGCGGACGGGTGGG
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAAACGAAC-GACGGGCGGG
* *
1936029 AGGGCGGGTGCGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
451 CGGGC--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
1936094 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCA
512 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
1936159 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
577 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * ** * * *
1936224 GATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGTAGGATTTTTGGCTCCAA
642 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
1936289 ACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCACAAAATAATTCAGCTAAAAACTTGAA
707 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
1936354 GTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGG
772 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
1936419 AAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
837 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
1936484 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGA-
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * *
1936548 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAAGTTCTTCGGCAATGCTCCGACGATGCTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG--G
* ** * * ** *
1936613 CCCC-AGTGAAGAAAAATGAAGCACCAGCACATG-CC---TCC--C-TG-GCCCCCCCAA---TC
129 CCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * ** * * * **
1936666 -AT-TGG---AAGCATA-ATTCCG-TTG-GC-CAGGT-T-CTCCGAC---G-ATG--CTCCGGTG
193 GGTCTGGTCTGATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTGGGAATGAACTCC-GT-
* **** * * * **** * * * * *
1936714 ATG-GTGCCCCAA-CAAAGAAA-AATGCG-GCATAAGCACATGCCCAAGCCCAGCATGTGC-TG-
255 ATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGTGCTCA-G-CC--GGCCAG-AGGGGCGGGA
* * ** * * ***** * * *
1936773 T-CGTAACCCTCGG-TCTGGTCTGATCTTAGACTGAGAATGAACT-CC-AT-ATGCTTAGACTAG
314 TGCGCAAGCCGGGGATC-GGTCGGGTCCCCCTCTGCG--TG--CTGCCGATCCTGCTT---C-CG
* ** * ** * * * ** * * * * ** * * *
1936833 GAATGAACTCCGT-ATGCCTAAGTC-AACCCAT-GAAACGAGCGTGCGGGTG-CTCAGCCAGCTA
370 CAA--CCCTCGGTCCGGTCTGA-TCTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGCCAAC-C
* ** * * * ** * * **
1936894 GAGGGGCGAGATACGGAA-GTCGGG-GATCGGTCGGGTC-C-CCCTTTG-CATGCTGCCGATCTT
429 GA----CGA-A-AC-GAACGACGGGCGGGCGGGCGGG-CACTACGTCGGCCA-G-AG-AGA-CGG
* * * * ** * * * *** * **
1936954 GCTACCGCAA-CCCTCGG-TCCGGTCTGAT-CTTGGACTGGCAATA--AAC-TC-T-ATATACCT
482 GAT-GCGCAAGCCGT-GGAT-CGATAGGGTGGTAGG--TGGGTTTAGGCACATCTTCATATTTCT
* * ******* ** * **** ** * * * * **
1937011 AAGCTAACCGACGAAATGAGCGGGCGGGCA-GGCGGGCGAGCGGGCGGGCACTACGCTGACCAGA
542 --GC--A-TG-C-CAAT--GC-CATTTTTATGGCTTG-TA-AATTC--ATACAATGGT-CCCTTA
* *** * * *** ** * * * *
1937075 GAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTA-GGTTGGTTTAGGC-ACATCTTCAT-A
592 -AGCCTTCACGTG-AA---GT--TTC-AT-GGCAAG-ACGACTCGTTT--TCTA-TTTTTCATGA
* ** * ** *
1937137 TTTCTCTATGCCAATGCCATTTTTATGGCTT-GTA-AATTCATACAATGGTCCCTTAAGCCTTCA
644 -TT-T-T-TG--AA--AC-TTTTTGCGG-TTCG-AGATTTTTTAAAAT--T---TT-----TTCA
* * *** * ** ** * ** *
1937200 CG-TGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
688 -GAAGGAGTTT--TGGCCCCA--A---ACTTGGTA---GACGTGATCCTTG-TA-TTTTT---GT
* ** * ** * * * **
1937264 TCGGGATTTTTTA-AAATTTTTTCAGAAGGAGTTTTAGCCCCAAAGCTGGTAAATGTGATCCTTT
737 T-GGCA---TGCACAAA-------A-AA--A--TTCAG-CTAAAAACTCG--AA-GTG-TAC-AA
* * *** * ** * * ** *
1937328 TATTTTTGTTGGGATGCA-CCAAAAAATTCAGCTAAGAACTCGAAGTGTACA-AGA-TTTTGTGA
780 GA-TTTTG-T--GA-CCATTTGAAAAA---AG-T--G-TC-CCCA-T-TTCAGACACTTTAATGG
* * * * ** *** * * * *
1937390 CCATTTG-A-AAAAAGTGTCCCCATTTCAGA--CACTTTAATGGCTACTGGCAGCAAACCTGTAA
830 CTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAA-GG-----GG--G------TGTGA
** * * * * * *
1937451 AATCTCAAATGCTCTTTAAGGGGGTG
880 GTTCTC-GA-GGT-TTGATGAGGG-A
**** *
1937477 TGAGTTCTCCAGGTTTGATGAGTGATAGGGGGCCAAGTACCAGCACCCATCGCATATCATGT-CT
1 T-AGGGGGCCA------AT-A-T-A-A--GGGCCAAGTACCAGCACCCATCGCACATCATGTGC-
* * * *
1937541 G--CA------CA-CCCCCCCGATCGCCAGAACCCCAATGCCGTCAGTCAGGTTCTCCGAC-A--
52 GCACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * *
1937594 AT---G-G-T-GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
117 CTCCGGCGATGGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * *
1937653 TCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
182 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
** * * * * *
1937718 AACTTTGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTGCTCAGCCAGCCAGAGGGGTGG
247 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
* * * * *
1937783 GATGCGCAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCACAACCGT
312 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCT
* * * * * * *
1937848 CAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGCA
377 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-
* * * * * * *
1937913 GATGGGCGAGCGGGTGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAT
441 GACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * ** *
1937978 GGTGGTAGGTGGGTTTCGGCACATCTTCATTTTTCTGTGTTCCAATGCCATTTTTATGGCTTGTA
506 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
* *
1938043 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATT
571 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
1938108 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGG
636 TTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* *
1938173 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAA
701 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
1938238 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
766 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
1938303 TACCGACAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGAT
831 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
1938368 GAGGGA
896 GAGGGA
* * *
1938374 TAGGGGG-CATATATAAGGGCCAAGTACCAGCACCTATCACACATCATGTGCGCACA-CCCCCTA
1 TAGGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCA
* * * **
1938437 -CCCCTCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTTGGCGATGGT
65 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-
* * * * * *
1938501 GCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCTACCGCAACCCTC
128 GCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
1938566 GATCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
193 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
1938631 CCTAAGTTAACCCACGAAACGAGCATACGGGCGCTCAACCGACCAGAGGGGCGGGATGTGCAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * * *
1938696 CAGGGATTGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGATCT
323 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCT
* * *
1938761 AATCTTAGACTGGGAATGTACTCCGTATGCCTAAGCCAACCGAC--AA--AACGA-------GCA
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCG
* * * * * * * ** *
1938815 GGCGGGCACTACATTGGCCAAAAAGACGGGATGCACAAGACATGGATCGATATTGTGGTTGGTGG
453 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
1938880 GTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
518 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
1938945 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCATGATTTT
583 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
1939010 TGAAACTTTTTGTGGTTCGGGATTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGG
648 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
*
1939075 TAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
713 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
1939140 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACCGACAACAA
778 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
1939205 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGATGTGAGTTCTTGAGGTTTGATGAGGGA
843 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
1939264 TAGGGGTCCATTATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCCAA
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* ** * * * * * *
1939329 CCCCTCCGATCATCGAAACTCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-G
* * * *
1939394 CCTCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTAG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
1939459 ATCTAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGTGAATGAACTCTGTATGC
194 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
1939524 CTAAGTCAACCCACAAAATGAACATGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC
259 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * **
1939589 GGGGTTCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTTCGTAACCCTCGGTTTGGTCTG
324 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTG
*
1939654 ATCTTAGACTGCGG-ATGAACTCCGTATGCCTAAACCAACCGACGAAACGAACGGACGGGCGGGC
389 ATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GACGGGCGGGC
* * * *
1939718 GGGTGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAAGTG
452 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
1939783 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
517 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
1939848 TTGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCAAGGCGACTCGTTTTTTATTTTTCATGATTT
582 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
1939913 TTGAAACTTTTTGCGGTTCGAGATTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
647 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * *
1939978 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACCTCAAAGTGT
712 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCGAAGTGT
* * * *
1940043 ACAAGATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTGCTGGCAGC
776 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
1940108 AAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGTTTTGATAAGGGA
841 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
1940169 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGAGTACACCCCCCCAG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * * *
1940234 TCCCCCCGATCGCTGGAACCCTAATACTGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGCA
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGC-
* * * * * * * *
1940299 CCCGGCAAAGAAAAAGGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCAG
130 CCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
1940364 TCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
195 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
1940429 TAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAG-CG
260 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * *
1940493 GGGATCGGCCAGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCAGTTCGATCTGA
325 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTGA
* * * *
1940558 TCTTAGAATGGGAATGAAATCCGTATGCTTAAGCCAACCGATGAAAC--A--A-------GCGGG
390 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCGGG
* * * * *
1940612 CAGGCACTACGTCGGCCAGAGAAATGGGATGCGCGAGCCGTGGATCGATAGGGTGGTAGGTTGGT
455 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * * * *
1940677 TTAGGGAAATCTTCATATTTTTACGTTCAAATGCCATTTTTATGGCTTCTAAATTCATACAATGG
520 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *** * * *
1940742 TCCCCTAAGCCTTCACGTGAAGTTTCATGATGAGACGACTTGTTTTCTATTTTTCACGATTTCTG
585 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* **
1940807 AAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTCTTA
650 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*
1940871 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAA
715 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
1940936 GATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACGGGCATCAAAC
780 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
1941001 CTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGGGGGA
845 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
1941058 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGC-TACACCCCCCCGG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * * *
1941122 CCCCTCGGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC-A--AT---G-G-T-GCC
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGCC
* * * * * *
1941178 TCGACAAAGAAAAAAGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGT
131 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * **
1941243 CTGATCTTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTTTATGCCT
196 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
1941308 AAGTCAACCCATGAAACGAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGCGAGATGTGCAAGCCGG
261 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * * **
1941373 GGATCGGCCAAGT--CCC-C--C-T-CTG-CG-TCCTG---CCGCAACCCTCAGTCCAGTCCAAT
326 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTGAT
* *
1941426 CTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAAACG-A-G-CGGGCGGGCGAGC
391 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCGGGC
* * *
1941488 GGGCACTATGTCGGCCAAAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
456 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
1941553 TAGTCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGAT
521 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
1941618 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
586 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
1941683 AACTATTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AGAGAGCTTTT-GCCCCAAACTTGGT
651 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAG-GAG-TTTTGGCCCCAAACTTGGT
* * * *
1941746 AGACGTGATCCTTGTATTTTTGTTGGCCTGGACAAAAAAATTCTGCTAAAAACACGAAGTGTACA
714 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
1941811 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGG-TACTGGCAGCAA
779 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAA
* * * *
1941875 ACCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTAGAGGTTTGGTGAGGGA
843 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
1941934 CAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCG--CA-CCCCCCGG
1 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
* * * * ** * *
1941995 CCCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGCTTCTCCGATGAGGCTCCGACGATGGTG
66 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGAT-G-G
* * * * * ** *
1942060 CCCTGACGAAGAAAAATACGGCACCAACAAATGCGCGAGCCTAGCATGTGCTATCGTAACCCTCG
129 CCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
1942125 GTCCGGT-TCGATCTTAGACTGGGAATGAATTCCGTATGCTTAAACTGGGAATGAACTCCGTATG
194 GTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** *
1942189 CCTAGGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGCCGGGCAGAGGGGCGGGATGCGCAAGC
258 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
** * * * * *
1942254 CGGGGATCGCCCGGGTTCCCCTATACGTGCTGCCGATCCTGCTGCCAC-ACCCTCGGTCCGGTCT
323 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCT
* * * * * ** *
1942318 GATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGCGGGTGGGCAGGC
388 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GACGGGCGGGC
* * * * *
1942383 AGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGTCTTGGATCGATAGGGTGGTAGGTG
452 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
1942448 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAA
517 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
1942513 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
582 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
1942572 GCCCAGCATG
Statistics
Matches: 12675, Mismatches: 1818, Indels: 1144
0.81 0.12 0.07
Matches are distributed among these distances:
867 60 0.00
868 1 0.00
870 5 0.00
871 89 0.01
872 5 0.00
873 246 0.02
874 6 0.00
875 226 0.02
876 228 0.02
877 25 0.00
878 751 0.06
879 229 0.02
880 153 0.01
881 74 0.01
882 14 0.00
883 183 0.01
884 217 0.02
885 29 0.00
886 113 0.01
887 161 0.01
888 649 0.05
889 348 0.03
890 1255 0.10
891 513 0.04
892 516 0.04
893 242 0.02
894 111 0.01
895 593 0.05
896 128 0.01
897 445 0.04
898 130 0.01
899 386 0.03
900 25 0.00
901 118 0.01
902 280 0.02
903 103 0.01
904 871 0.07
905 323 0.03
906 369 0.03
907 92 0.01
908 4 0.00
909 82 0.01
910 14 0.00
911 6 0.00
912 18 0.00
913 10 0.00
914 10 0.00
915 8 0.00
916 2 0.00
917 172 0.01
918 5 0.00
919 5 0.00
920 203 0.02
921 370 0.03
922 145 0.01
923 6 0.00
924 2 0.00
925 4 0.00
926 3 0.00
927 3 0.00
928 1 0.00
929 494 0.04
930 193 0.02
931 1 0.00
932 6 0.00
934 3 0.00
935 1 0.00
937 5 0.00
940 8 0.00
941 3 0.00
942 8 0.00
944 3 0.00
945 4 0.00
946 3 0.00
948 8 0.00
949 3 0.00
950 8 0.00
953 5 0.00
955 1 0.00
956 2 0.00
958 6 0.00
959 1 0.00
960 14 0.00
961 7 0.00
963 2 0.00
964 3 0.00
965 4 0.00
966 1 0.00
967 5 0.00
968 2 0.00
969 2 0.00
970 25 0.00
971 3 0.00
973 4 0.00
974 1 0.00
975 9 0.00
976 10 0.00
977 9 0.00
978 19 0.00
979 6 0.00
980 11 0.00
981 4 0.00
982 2 0.00
983 1 0.00
984 2 0.00
987 31 0.00
988 10 0.00
989 10 0.00
990 7 0.00
991 5 0.00
992 8 0.00
993 4 0.00
994 13 0.00
995 7 0.00
996 3 0.00
997 2 0.00
998 47 0.00
999 16 0.00
1000 18 0.00
1001 12 0.00
1002 14 0.00
1003 11 0.00
1004 8 0.00
1005 3 0.00
1006 48 0.00
1007 21 0.00
1008 7 0.00
1009 3 0.00
1010 4 0.00
1011 10 0.00
1012 11 0.00
1013 26 0.00
1014 13 0.00
1015 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG
CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGCC
CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTCGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGACGGGCGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
Found at i:1940411 original size:26 final size:26
Alignment explanation
Indices: 1940375--1940427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1940365 CCGATCTGAT
1940375 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1940401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1940427 C
1 C
1940428 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1941304 original size:26 final size:26
Alignment explanation
Indices: 1941248--1941305 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
1941238 TTGGTCTGAT
1941248 CTTAT-CTTAGACTGGGAATGAACTC
1 CTTATGCTTAGACTGGGAATGAACTC
*
1941273 CGTATGCTTAGACTGGGAATGAACTC
1 CTTATGCTTAGACTGGGAATGAACTC
*
1941299 TTTATGC
1 CTTATGC
1941306 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTATGCTTAGACTGGGAATGAACTC
Found at i:1942166 original size:26 final size:26
Alignment explanation
Indices: 1942137--1942189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1942127 CCGGTTCGAT
* *
1942137 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
1942163 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
1942189 C
1 C
1942190 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:1942643 original size:26 final size:27
Alignment explanation
Indices: 1942614--1942668 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
1942604 GTCCGATCTT
*
1942614 AGACAGGGAATGAACTCCGTATG-CTA
1 AGACAGGGAATGAACTCCATATGCCTA
*
1942640 AGACTGGGAATGAACTCCATATGCCTA
1 AGACAGGGAATGAACTCCATATGCCTA
1942667 AG
1 AG
1942669 TCAACCCACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
AGACAGGGAATGAACTCCATATGCCTA
Found at i:1942991 original size:475 final size:474
Alignment explanation
Indices: 1942097--1943046 Score: 1408
Period size: 475 Copynumber: 2.0 Consensus size: 474
1942087 CAAATGCGCG
* * * * * * *
1942097 AGCCTAGCATGTGCTATCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAATTCCGTAT
1 AGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTAT
* * * * *
1942162 GCTTAAACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATAAAACGAGCGTGCGGGTGCTCAG
66 GCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCAGAAAACAAGCATGCGGGTGCTCAG
* * * *
1942227 CCGGGCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCCCGGGTTCCCCTATACGTGCTGCCGATC
131 CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTTCCCCTATACGTGCTGCCGATC
1942292 CTGCTGCCACACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAA
196 CTGCTGCCACACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAA
* * * * **
1942357 CCGACAAAATGAGCGGGTGGGCAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
261 CCGACAAAACGAGCGGGTGGACAGGCAGGCAGGCACTACCCCGGCCAGAGAGACGGGATGCACAA
* * *
1942422 GTCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
326 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
1942487 TTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
391 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
1942552 GACTCGTTTTCTATTTTTC
456 GACTCGTTTTCTATTTTTC
*
1942571 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTAT
1 AGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTAT
1942636 GC-TAAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAA-AAGCATGCGGGTGCTC
66 GCTTAA-ACTGGGAATGAACTCCATATGCCTAAGTCAACCCA-GAAAACAAGCATGCGGGTGCTC
* * * * * *
1942699 AGCCGGCCAGAGGGGTGGGATGCACAAGTCGGGGATCGATCGAG-TCTCCCTCTGCGTGCTGCTG
129 AGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTTC-CCCTATACGTGCTGCCG
*
1942763 ATCCTGCTGTCGCA-ACCCTCGGTCTGGTCTGATCTTAGACT-AGGAATGAACT-TCGTATGCCT
193 ATCCTGCTG-C-CACACCCTCGGTCCGGTCTGATCTTAGACTGA-GAATGAACTCT-GTATGCCT
** * ** *
1942825 AAGCCAACCGATGAAACGAGTGGGTGGATGGGCGGGCAGGCACTACCCCGGCCAGAGAGACGGGA
254 AAGCCAACCGACAAAACGAGCGGGTGGACAGGCAGGCAGGCACTACCCCGGCCAGAGAGACGGGA
*
1942890 TGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCC
319 TGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
1942955 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
384 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
*
1943020 GCAAGACGACTCGTTTTTTATTTTTC
449 GCAAGACGACTCGTTTTCTATTTTTC
1943046 A
1 A
1943047 CAATTTTTGA
Statistics
Matches: 426, Mismatches: 43, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
473 5 0.01
474 168 0.39
475 251 0.59
476 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (474 bp):
AGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACAGGGAATGAACTCCGTAT
GCTTAAACTGGGAATGAACTCCATATGCCTAAGTCAACCCAGAAAACAAGCATGCGGGTGCTCAG
CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTTCCCCTATACGTGCTGCCGATC
CTGCTGCCACACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAA
CCGACAAAACGAGCGGGTGGACAGGCAGGCAGGCACTACCCCGGCCAGAGAGACGGGATGCACAA
GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTC
Found at i:1943542 original size:26 final size:26
Alignment explanation
Indices: 1943504--1943556 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1943494 CTGGTCTGAT
* *
1943504 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1943530 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1943556 C
1 C
1943557 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1944007 original size:26 final size:26
Alignment explanation
Indices: 1943978--1944030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1943968 CCGATCTGAT
*
1943978 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
*
1944004 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
1944030 C
1 C
1944031 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:1946492 original size:26 final size:26
Alignment explanation
Indices: 1946456--1946505 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1946446 CCGGTCCGAT
1946456 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTGCGTATG
* *
1946482 CTTAGATTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTGCGTA
1946506 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCGTATG
Found at i:1947385 original size:26 final size:26
Alignment explanation
Indices: 1947349--1947401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1947339 CAGGTCTGAT
1947349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1947375 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1947401 C
1 C
1947402 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1947559 original size:893 final size:891
Alignment explanation
Indices: 1944819--1947897 Score: 4158
Period size: 894 Copynumber: 3.4 Consensus size: 891
1944809 GTCCAGCATG
* * * *
1944819 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTATATTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
1944884 CTGATGAAATGAGCGGGCGGGCCGGCGAGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCG
66 CCGATGAAACGAACGGGCGGG-C--AG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
* * *
1944949 TGTATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
127 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTT
* *
1945014 TATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
192 TATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * *
1945079 CGTTTTCTATTTTTCAAAATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAA
257 CGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* ** *
1945144 AAGGATTTTTGGTGCCAAACTTGGTAGACATAATCCTTGTTTTTTTGTTGGCATGCACAAAAAAA
321 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG-TTTTTTGTTGGCATGCAC--AAAAA
*
1945209 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
383 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* **
1945274 TACACTTTAATGGCTACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
448 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
1945339 TCTTAAGGTTTGAAGAGGGATAGGGGGCCAACATAAAGGCCAAGTACCAGCACCCATCGTACATC
513 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *** *
1945404 ATGTGCGCACACCACCCGG-CCCCTCGATCGTTGGAACCCCAATGTCGTCGGTCAGGTTCT-C--
578 ATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * *
1945465 C---G----GTGATGGTGCCCCGGTGAAGAAAAATGTGACACCAACACATGCCCGAGCCTAGCAT
643 CGATGCTCCGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCAT
* * * *
1945523 GTGCTGCCGCAACCCT-CGATCTA-GTCCAATCTTAGACAGGGAATGAACTCCGTATGCTTACAC
708 GTGCTGCCGCAACCCTCCG-TC-AGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
* * * * *
1945586 TGGGAATGAACTCCATATGGCTAAGTCAACCCA-TGAAACGAGCGTGCGGGTGCTCAGCCGGCAA
771 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACT-AAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * *
1945650 AAGGGGCT-GGATGCGCAAG-TCGAGGATCGATCGGGTCCCCCTCTACGTGCTACTGATCC
835 GAGGGG-TGGGATGCGCAAGCT-G-GGATCGACCGGGTCCCCCTCTGCGTG-TTCTGATCC
* * * *
1945709 TGCTGCCATATA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTGCCACA-ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
1945773 ACCGACGAAACGAGCGGACGAGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
65 ACCGATG-AA--A-C-GA--A-CGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ***
1945838 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-TGATTTCTATGTGCCAATGC
122 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCCTGCCAATGC
*
1945902 CATTTTTATGGCTTTCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
186 CATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
1945967 GC-ATCCCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTAAACTTT
251 ACGA-CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
** *
1946031 TTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
315 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-TTTTTGTTGGCATGCACA
*
1946095 AAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
379 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
1946160 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTCTAAGGGGGTGT
444 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
1946225 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTGCA
509 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
1946290 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCTCAATGCCGTCTGTCAGGTTC
574 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTC
* * ** *
1946355 TCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAGGTGGCACCAACACATGCTCGAGCC
638 TCCGGCGATGCTCC-GTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCC
* * *
1946420 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTGCGTATGCTT
702 CAGCATGTGCTGCCGCAACCCTCCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
1946485 AGATTGGGAATGAACTTCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCCGG
767 AGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * *
1946550 CCAGAGGGACGGCATGCACAAGCCGGGGATCGACGGGGTCCCCCTCTGCGTGCTATC-GATCC
832 CCAGAGGGGTGGGATGCGCAAG-CTGGGATCGACCGGGTCCCCCTCTGCGTG-T-TCTGATCC
* * * * *
1946612 TGCTGCCACAGCCCTCGGTCCGGTCTGATCTTAAACTGGGAGTGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
1946677 CCGATGAAACGAACGGGCGGGCAGGCACTACGCAGGCCTGAGAGACGAGATGCGTAAGCCATGGA
66 CCGATGAAACGAACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
* *
1946742 TCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCTATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATG
1946807 GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
196 GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
1946872 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATATTTTAAAATTTTTT-GGAAGGA
261 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
* *
1946936 GTTATGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTGTTGGTATGCACAAAAAAATTCAGC
326 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
1947001 TAAAAAGTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
1947066 AATGGCTACTGGCAGCACACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
1947131 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGC
521 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * **
1947196 ACACCCCCCGGCCCCCCCGATTACCAGAACCCCAAAGGCACCGGTCAGGTTCTCCGGCGATGCTC
586 ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * * *
1947261 CGATGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGT
651 CG-TGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTGC
*
1947326 CGCAACCCTCCGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGA
715 CGCAACCCTCCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGA
* * *
1947391 ACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGAGCACTCAGTCGGCCAGAGGGGTGGG
780 ACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGG
* * *
1947456 ATGCGCAAGCTGGGAATCGACCGGGTCCCCCTATGCATGTTGCTGATCT
845 ATGCGCAAGCTGGG-ATCGACCGGGTCCCCCTCTGCGTGTT-CTGATCC
* * ** * *
1947505 TGTTGCCGCAACCCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
1947570 CTGATGAAACGAACGGGCGGGCAGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCA
66 CCGATGAAACGAACGGGCGGGCA----GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
*
1947635 TGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACATCTTCATATTTTTGCCTGCCAATGCCATTT
127 TGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCCTGCCAATGCCATTT
* * *
1947699 TTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGAC
191 TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
1947764 TTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCAG
256 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
** *
1947829 AAGGAGTTTTTACCCCAAACTTGGGTAGAC--GATCCTTGTATTTTGTTGGCATGCAC-AAAAAA
321 AAGGAGTTTTGGCCCCAAACTT-GGTAGACATGATCCTTGTTTTTTGTTGGCATGCACAAAAAAA
1947891 TTCAGCT
385 TTCAGCT
1947898 TTTTAAAAAC
Statistics
Matches: 1930, Mismatches: 212, Indels: 88
0.87 0.10 0.04
Matches are distributed among these distances:
890 256 0.13
891 12 0.01
892 82 0.04
893 374 0.19
894 402 0.21
895 244 0.13
896 16 0.01
897 236 0.12
898 31 0.02
899 8 0.00
900 1 0.00
902 2 0.00
903 263 0.14
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (891 bp):
TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAACGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATG
GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTTTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
CGTGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCC
GCAACCCTCCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
CTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
TGCGCAAGCTGGGATCGACCGGGTCCCCCTCTGCGTGTTCTGATCC
Found at i:1950462 original size:26 final size:26
Alignment explanation
Indices: 1950433--1950485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1950423 CTGGTCCAAT
1950433 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1950459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1950485 C
1 C
1950486 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1951370 original size:26 final size:26
Alignment explanation
Indices: 1951319--1951371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1951309 CCGGTCCGAT
* *
1951319 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
1951345 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
1951371 C
1 C
1951372 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:1954640 original size:716 final size:715
Alignment explanation
Indices: 1953255--1954704 Score: 2142
Period size: 716 Copynumber: 2.0 Consensus size: 715
1953245 GATCTGGTAT
* * * * *
1953255 GATCTTAGAATGGGAATGAACTCTGTATGCCTAATCCAACCGACGAAACGAGCGGCCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGCGGGC
*** * * * * *
1953320 GAGCGGGCACTACGTTGGGTAGAGAGACGGGATGCGCAAGTCATGAATCAATAGGGGGTAGGTGG
66 GAGCGGGCACTACGCCAGCTAGAGAGACGAGACGCGCAAGCCATGAATCAATAGGGGGGAGGTGG
*
1953385 ATTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 ATTTAGGCACATATTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
1953450 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTTTATTTTTCATGATTTT
196 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
*
1953515 TGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTTGAAAGACGTTTTGCCCAAAACCTGAT
261 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGACGTTTTGCCCAAAACCTGAT
* * * ** * *
1953580 AGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
326 AGACATGATCCTTGTATTCTTCATGGCATGCACAAAAAAACTCAGCTAAAAACTCAAAGTGTACA
* * *
1953645 AGATTTTGCGACCATTTGAAAAAAAGTGTCCGCATTTTAGACACTTTAATGGCTACTGGCAGCAA
391 AGATTTTGCGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAA
1953710 ACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
456 ACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
1953775 GAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCTCCCGA
521 GAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGA
* * * *
1953840 TCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACAA
586 TCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCAGCGATGGTGACCCGACAA
* * * *
1953905 AGAAAAATGCCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTGCAACCCTCGGTTCGATC
651 AGAAAAATGCCGACACCAGCAAATGCCC-AGCCCAACATGTGCTACAGCAACCCTCGGTTCGATC
1953970 C
715 C
* * * *
1953971 GATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGATCCGACGGGTGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGCGGGC
* * * *
1954036 GGGCGGGCGCTACGCCAGCTAGAGAGACGAGACGCGCAAGCCGTGGATCAATAGGGTGGGAGGTG
66 GAGCGGGCACTACGCCAGCTAGAGAGACGAGACGCGCAAGCCATGAATCAATAGGG-GGGAGGTG
* * *
1954101 GTTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
130 GATTTAGGCACATATTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
1954166 TGGTCCCTTAAGCCTTCACGTGAAGTTT-ATGGTAAGACGACTCGTTTTCTATTTTTCATAATTT
195 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTT
* * * *
1954230 TTGAAACTTTTTGCGGTTCTAGATTTTTTAAAATTTTTTTGGAAGGA-GTTTTGGCACC-AAACT
260 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT-GAAAGACGTTTT-GC-CCAAAACC
*
1954293 TGGTAGACATGATCCTTGTATTCTTCATGGCATGCACAAAAAAACTCAGCTAAAAACTCAAAGTG
322 TGATAGACATGATCCTTGTATTCTTCATGGCATGCACAAAAAAACTCAGCTAAAAACTCAAAGTG
* *
1954358 TACTAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCA
387 TACAAGATTTTGCGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCA
* *
1954422 GCAAACCTGTAAAGTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** * * *
1954487 GGGGGCCAATATAAGGGCCAAGTTCCAGCATCCATTGCACATCATGTGCGCACA-CCCCCGGCCC
517 GGGGGAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--C
*
1954551 CCCCGATCGCCAGAACCCCAATGCCGTCGGTCAAGTTCTCC-AGCGATGCTCC-GACGATGGTGA
580 CCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGA-CGATGCTCCAG-CGATGGTGA
*
1954614 CCCGACAAAGAAAAATG-CGACACCAGCAAATGCCCAGCCCAGCATGTGCTACAGCAACCCTCGG
643 CCCGACAAAGAAAAATGCCGACACCAGCAAATGCCCAGCCCAACATGTGCTACAGCAACCCTCGG
* *
1954678 TTTGATCT
708 TTCGATCC
*
1954686 GATATTAGACTGGGAATGA
1 GATCTTAGACTGGGAATGA
1954705 CTCTATATGC
Statistics
Matches: 656, Mismatches: 70, Indels: 17
0.88 0.09 0.02
Matches are distributed among these distances:
715 56 0.09
716 343 0.52
717 255 0.39
718 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (715 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGCGGGC
GAGCGGGCACTACGCCAGCTAGAGAGACGAGACGCGCAAGCCATGAATCAATAGGGGGGAGGTGG
ATTTAGGCACATATTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGACGTTTTGCCCAAAACCTGAT
AGACATGATCCTTGTATTCTTCATGGCATGCACAAAAAAACTCAGCTAAAAACTCAAAGTGTACA
AGATTTTGCGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCAGCAA
ACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGA
TCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCAGCGATGGTGACCCGACAA
AGAAAAATGCCGACACCAGCAAATGCCCAGCCCAACATGTGCTACAGCAACCCTCGGTTCGATCC
Found at i:1955606 original size:26 final size:26
Alignment explanation
Indices: 1955570--1955622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1955560 CTGGTCCAAT
* *
1955570 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
1955596 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
1955622 C
1 C
1955623 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:1955887 original size:158 final size:159
Alignment explanation
Indices: 1955596--1955963 Score: 481
Period size: 158 Copynumber: 2.3 Consensus size: 159
1955586 ACTCCGTATG
* * * * * * *
1955596 CTTAGACTGGGAATAAACTCTGTATGCCTAAGTTAACCCAGGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGC
* * *
1955661 CGACCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCACCCC
66 CGACCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTACTGCCAACCC
* *
1955726 TGCTGCCACAACCCTAGGTCTGGTCCGAT
131 TGCTGCCACAACCCTAGGTCCGATCCGAT
*
1955755 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGC
** * *
1955820 CGGTC-GAGGGGCTG-GATGCGCAAG-CTGAGGATCGGTCGGGTCCCCCTCTGCGTACTGCCAAT
66 CGACCAGAGGGGC-GAGATGCGCAAGCCAG-GGATCGGTCGGGTCCCCCTCTGCGTACTGCCAAC
* * *
1955882 CCTGCTGCCGCAACCCTTGGTCCGATCTGAT
129 CCTGCTGCCACAACCCTAGGTCCGATCCGAT
* * * *
1955913 CTTAGACTGGGAGTGAACTCCATATGCCTAAGCCAACCAACGAAACGAGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTG
1955964 GGCGGGTGGG
Statistics
Matches: 183, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
157 2 0.01
158 120 0.66
159 61 0.33
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGC
CGACCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTACTGCCAACCC
TGCTGCCACAACCCTAGGTCCGATCCGAT
Found at i:1956668 original size:26 final size:26
Alignment explanation
Indices: 1956632--1956684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1956622 CCAGTTCAAT
1956632 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
1956658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
1956684 C
1 C
1956685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:1956945 original size:26 final size:26
Alignment explanation
Indices: 1956905--1956957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1956895 CTGGTCTGAT
1956905 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* *
1956931 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
1956957 C
1 C
1956958 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:1957054 original size:273 final size:274
Alignment explanation
Indices: 1956545--1957056 Score: 686
Period size: 273 Copynumber: 1.9 Consensus size: 274
1956535 ACGATGCTTC
* * **
1956545 GACGATGGTGCCCCAAAGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTC
1 GACGATGGTGCCCCAAAGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
* *
1956610 GTAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAA
66 GCAACCCTCGGTCCAGTTCAATCTTAGACTGGCAATGAACTCCGAATGCTTAGACTGGGAATGAA
* * *
1956675 CTCCGTATGCCTAAGTCAACAAACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGCGCGGGA
131 CTCCGTATGCCTAAGTCAACAAACGAAACAAGCATGCGGGCGCTCAGCCAGACAGAGGCGCGGGA
* ** * * *
1956740 TGTGCAAGTTGGGGATAGACTGGGCCCCCCTCTGCGTGCTGTCGGTACTACTACCCCAATGCCGC
196 TGCGCAAGCCGAGGATAGACCGGGCCCCCCTCTACGTGCTGTCGGTACTACTACCCCAATGCCGC
1956805 CAATCAAGTTCTCT
261 CAATCAAGTTCTCT
** * *
1956819 GACGATGGTG-CCCATCGAAGAAAAATACGACACCAGCACATGCCCGAGCGCAGCATGTGCTACC
1 GACGATGGTGCCCCAAAGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
* * * *
1956883 GCAACCCTCGGT-CTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGA
66 GCAACCCTCGGTCCAGTTC-AATCTTAGACTGGCAATGAACTCCGAATGCTTAGACTGGGAATGA
* * ** * * * * *
1956947 ACTCTGTATGCCTAAGTCCACCCATGAAACAAGCATGCGGGTGCTCAGCCGGACAGAGGGGTGGG
130 ACTCCGTATGCCTAAGTCAACAAACGAAACAAGCATGCGGGCGCTCAGCCAGACAGAGGCGCGGG
* * *
1957012 ATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTATGTGCTGTCG
195 ATGCGCAAGCCGAGGATAGACCGGGCCCCCCTCTACGTGCTGTCG
1957057 ATCTTGCTGC
Statistics
Matches: 202, Mismatches: 35, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
272 4 0.02
273 188 0.93
274 10 0.05
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (274 bp):
GACGATGGTGCCCCAAAGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
GCAACCCTCGGTCCAGTTCAATCTTAGACTGGCAATGAACTCCGAATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACAAACGAAACAAGCATGCGGGCGCTCAGCCAGACAGAGGCGCGGGA
TGCGCAAGCCGAGGATAGACCGGGCCCCCCTCTACGTGCTGTCGGTACTACTACCCCAATGCCGC
CAATCAAGTTCTCT
Found at i:1957839 original size:26 final size:26
Alignment explanation
Indices: 1957810--1957862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1957800 CCGATCTGAT
*
1957810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
1957836 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
1957862 C
1 C
1957863 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:1958729 original size:26 final size:26
Alignment explanation
Indices: 1958700--1958752 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1958690 CCAGTCCGAT
1958700 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
1958726 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1958752 C
1 C
1958753 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:1960451 original size:26 final size:26
Alignment explanation
Indices: 1960415--1960467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1960405 GTTGACTTAG
1960415 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* * *
1960441 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1960467 G
1 G
1960468 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1961365 original size:26 final size:26
Alignment explanation
Indices: 1961328--1961380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1961318 GTTGACTTAG
*
1961328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1961354 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1961380 G
1 G
1961381 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1963505 original size:880 final size:882
Alignment explanation
Indices: 1959866--1969304 Score: 10179
Period size: 898 Copynumber: 10.6 Consensus size: 882
1959856 NNNNNNNNNT
* *
1959866 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* *
1959931 CATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
66 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * * * *
1959996 TTAAAAAATCCCAAACCGTAAAAAATTTCAAAAATCGTGAAAAATTGAAAATGAGTCGTCTTGCC
131 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
1960061 ATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
196 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
1960126 GCACACAAAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGA-CC-ACGATTACGCGC
261 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTT--GCGC
* * * *
1960188 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCGCCCGTCCGCCCGCTCGTTTCATTGGTTGG
324 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCC--CCG-CCGTTCGTTTCGTCGATTGG
* * * **
1960251 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA-TGAAGGTCACGGCAGCAGGA
386 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGAGGGTTGCGGCAGCAGGA
* * * * * * * *
1960315 TCGGTAGCATGCAGTGGGGGACCAGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
450 TCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
1960380 GAGCACCCGCACGTTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCAT
515 GAGCGCCCGCACGCTCGTTTCG-TGG-TG---T----AT---GAG-TCATT--CAG--T-AGCAT
* * * *
1960445 ACGGAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTAACGGCAGCACATGCTGGGCTCC
562 ACGAAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT-C
* *
1960510 G-GCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCGCCAGAGAAC
625 GAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCAGAGAAC
* * * * ** * *
1960573 CTGATCGACAGCATTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGTTTGCGCACATGATGTGCAA
689 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
1960638 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCATACC
754 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
1960703 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAACCATTAAAGTGTCTGAAATCG
819 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
1960767 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTTAGCTGAATTTTTTTGT
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGT
*
1960831 GCATGCCAACAAAAATACAAGGA-CACGACTACCAAGTTTGGGGGACCAAAAAC-CCTTTCGAAA
65 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT-GGGG-CC-AAAACTCCTTTCGAAA
*
1960894 AAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAATCATGAAAAAATAGAAAACGAGTC
126 AAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATG-AAAAATAGAAAACGAGTC
* * *
1960959 GTCCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGACTTTACCAAGCAATAAA
188 GT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAA
* *
1961024 AATTGGCATTGGCAAT-CAGAAATATGAAGATGTGCCTAAACCCCACCTGCCACCCCTACCCGAT
251 AA-TGGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAAA-CCCACCTACCA-CCCTA-TCGAT
* * * * *
1961088 CC-ACGCTTGCGCATCCTGTCTCTCTGGCCAGGCGTAGTGCCCGCCCGATCGCCCGC-CCGTTCA
311 CCAAGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCG-CCG-CCGCCCCCGCCGTTCG
* * *
1961151 TTTCGTC-AGTTGGCTTGGGCATACGGAGTTCATTCCCCGTCTAAGATCGGA-TCAGACTGAGGG
373 TTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACTGAGGG
* * * *
1961214 TTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATTCCGC
436 TTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC
*
1961279 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGTGTTGACTTAGGCATACGGAGTTCATT
501 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG-G-TG---T----AT---GAG-TCATT
* *
1961344 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC-GACCAAGGGTTGCGGCAGC
553 --CAG--T-AGCATACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGC
* * ** * *
1961408 ACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTCTT-TTAATCGGGGCACCATCGTCGTAGC
612 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTT-TTCTTCATCGGGGCACCATCGTCGGAGC
*
1961472 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGGTGTGC
676 ATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGC
* *
1961537 GCACATGATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACC
739 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
1961602 TCGAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTGCAGGTTTGCTGCCAATAGCCATTCA
804 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
1961666 AGTGTCTGAAATGG
869 AGTGTCTAAAATGG
* * ** *
1961680 GGACACTTTTTTCAAATAGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTGTTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1961745 CATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
66 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* *
1961810 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
130 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
1961875 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATT
195 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1961940 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
260 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCA
*
1962005 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCG--CCCG-C-TT-GTTTCGTCGGTTGGCTTA
325 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCCCGCCGTTCGTTTCGTCGATTGGCTTA
* * * * ** * *
1962063 GGCACACGGAGTTCATTCCCAGTCTAAGATCGAAC-CAGGCCAAGGGTTGCGGTAGCAGGATCAG
390 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
1962127 TAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCACATGCCGGCCCTCTGGTCGGCTGAGC
454 CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
1962192 TCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCGAGCAAACGG
519 GCCCGCACGCTCGTTTCGT-GG-TG---T----AT---GAG-TCATT--CAGT---AGCATACGA
* * ** * * * *
1962257 AGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGGGTTGCAGTAGCACATGCTGGGC-CAGGGC
566 AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GAGC
* * * *
1962321 ATGTGCTGGTGCCGCATTTGTCTTCGTCGGGGCACCA---T-----CATCG---TAGAACCTGAC
629 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
* * *
1962375 CGGTGGCATTGGGGTTCTGACGATCGGGGTGGCCGGGGGGTGTGCGCAC-TGGATGTGCGATGGG
694 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT-GATGTGCGATGGG
* * *
1962439 TGCTGTTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
758 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
1962504 TAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
823 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
1962564 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
** *
1962629 CATGCCAAATAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTTCAAAAAAAT
66 CATGCCAAA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* *
1962694 TTTAATAAATCCCGAACCGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
130 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
1962759 CATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATT
195 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
1962824 GGCATTCAGAAATATGAAGATGTGCCTAAACCCACGTACCGCCCTATCGATCTAAGGCCTTGCGC
260 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGG-CTTGCGC
* * ** *
1962889 ATCCCCGTCTTTCTAGCCGGTATAGTACCCGTCCGCCGCCCTCCGTCCGTTCGTTTCGTCGATTG
324 AT-CCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCGCCC-CCG-CCGTTCGTTTCGTCGATTG
* * * * *
1962954 GCTTAGGCACACGGAGTTCATTCCTAGTCTAAGATCGGAGTGAACTGAGGGTTGCGGCAGTAAGA
385 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGGA
* * * *
1963019 TTGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCGCCTCTGGCCGACT
450 TCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
1963084 GAACGCCCGCACGTTTGTTTCGTGG-GT-TG-G-C-TT-AG-A-CATACGAAGTTTATTCCAGTC
515 GAGCGCCCGCACGCTCGTTTCGTGGTGTATGAGTCATTCAGTAGCATACGAAGTTCATTCCAGTC
* * *
1963141 TAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTACCACA
580 TAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACA
* *** * *
1963206 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGTATTAGGGTT
645 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTT
* ** * * *
1963271 CCGGCGATCAAGGGGGCCAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
710 CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
1963336 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
775 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
1963401 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGG
840 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
1963444 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
**** * *
1963509 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTAAAAAAATCCTTCCGAAAAAAT
66 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* *
1963574 TTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
130 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
1963639 CATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATTAATTTACAAGCCATAAAAATGGCATT
195 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
1963704 GGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCA
260 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCA
* * * * * *
1963769 TCCTGTCTCTCAGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGCCTGCTCATTTTGTCGGA-T
325 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCG-CC-CCCGCC-GTTCGTTTCGTC-GATT
* * * * ** * ***
1963833 GGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGAACCAAACTGAGGATTGCAATAGCAGG
384 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGG
* * * * * * *
1963898 ATCGGTAGCACGCAGAGGGGGACACGGTCGATCCTCGGCTTGCGCATCACGCCCCTCTGACCGGC
449 ATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** *
1963963 TGAGCGCTTGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCAAGTCTAAGCA
514 TGAGCGCCCGCACGCTCGTTTCGT-GG-TG---T----AT---GAG-TCATT-C-AG--T-AGCA
* * * * * * * * *
1964028 TACGGAGTTCATTCCCAGCCTAAGATTGGGCTGGACCAAGGGTTGCGGTAGCACATGTTGGGCTC
561 TACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* * * * *
1964093 GGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CAGGAGCATCACCGGAGAAC
625 GAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCAGAGAAC
* * * *
1964157 CTGACCGGCGGCATTAGGGTTCTGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGA
689 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1964222 TGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
754 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1964287 CCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGT-TCAAAATGG
819 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGG
** * *
1964351 GGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTTTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* *
1964416 CAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAATTCCTTTCGAAAAAAT
66 CATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* *** * * * * **
1964480 TTAAAAAAATCTTAAACCGCAAAAAGCTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTCAC
130 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
1964545 CATTAAACTTGACGTGAAGGCTTAAGGGACCATTGCATGAATTTACGAGCCATAAAAATGGCATT
195 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1964610 TGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CCACGGCTTGCGCA
260 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCA
* * *
1964674 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGTCCACCCTCC-CC-CTCATTTCGTC-AGTTGG
325 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-G-CCGCCC-CCGCCGTTCGTTTCGTCGA-TTGG
* * * * * *
1964736 CTTAGGCATAAGGTGTTCATTCCCAGTCTAAGATCTGAAT-AGCCGAGGGTT------GC--GA-
386 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGGAT
* *** * * *
1964791 ---CAGCACGCAGAGGGGGACCCGATAGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGACTG
451 CGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
1964853 AGCACCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATA
516 AGCGCCCGCACGCTCGTTTCG-TGG-TG---T----AT---GAG-TCATT--CAG--T-AGCATA
* * * *
1964918 CGGAGTTCATTCCTAGTCTAAGATCGAATCGGACCGAGGGTAACGGCAGCACATGCTGGGCTCCG
563 CGAAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCT-CG
* *
1964983 -GCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCGCCAGAGAACC
626 AGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCAGAGAACC
* * * * ** * *
1965046 TGATCGACAGCATTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGTTTGCGCACATGATGTGCAAT
690 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
1965111 GGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCATACCC
755 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
1965176 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAACCATTAAAGTGTCTGAAATCG
820 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
1965239 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTAAGCTGAATTTTTTTGT
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTTGT
* * *
1965303 GCATGCCAAAAAAAATACAAGGATCACGACTACCAAGTTTGGGACCAAAACCCCTTTCGAAAAAA
65 GCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
1965368 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATGGAAAATGAGTCGTCTTG
129 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
1965433 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCAT
194 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
1965498 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCATGGCTTGCGC
259 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
** * * * *
1965563 ATCCCGTCTCTCTACCCAGTGTAGTGCCCGCCCGTCCGCCCAC-CCGTTCGTTTCATCGATTGGC
324 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCGCCCCCGCCGTTCGTTTCGTCGATTGGC
* * * * *
1965627 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCAGACCGAGGGTTGCCGTAGCAGGAT
387 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
1965691 TGACAGCACTTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGTTG
451 CGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
1965756 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAATCTAAGCATA
516 AGCGCCCGCACGCTCGTTTCGT-GG-TG---T----AT--G-AG-TCATT--C-A-GT-AGCATA
* * * * ** *
1965821 CGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAACAGCACATGCTGGGCTTGA
563 CGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA
* * * *
1965886 GCAAT-TGCTGGTGTCACATTTTTCTTCGTCGGGTCACCATCGTCAGAGCATCGCCAGAGAACCT
627 GC-ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCT
* * *
1965950 GACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGTC-GGGGG-GTGCGCAAATGATGTGCGATG
691 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
1966013 GGTGCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTAATCAAACTTCGAGAACTCACACCCC
756 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
1966078 CTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGG
821 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* ** * *
1966140 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTGAATTTTGTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * *** * * *
1966205 CATCCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGTGGAAATTCCTTCCAAAAAAAT
66 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * * *
1966270 TTTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGCCGTCTTG
130 TTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
1966335 CCATGAAACTTCACGGGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
194 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * **
1966400 TGGCATGCAGAAATATGTAGATATACCTAAACCCTCCTACCACCCTATCGATCGGTTA-GCTTGC
259 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC--CAAGGCTTGC
* * * * * *
1966464 GCATCTCGTCTCTCTGGTCGGCGTAGTACCCG-C-CCGCCCGC-CCGTTCATTTCGTCGGTTGGC
322 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCCCGCCGTTCGTTTCGTCGATTGGC
* * * * * *
1966526 TTAGGCATACGGAGTTCATTTCAAGTCTAAGATCGGATCAGATC-AAGGGTTACGGCAGCAGGAT
387 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGAGGGTTGCGGCAGCAGGAT
* * ** * *
1966590 CGGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTCACGCATCCCGCCACTC-GGCCCGACT
451 CGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGGCT
*
1966654 GAGAGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
515 GAGCGCCCGCACGCTCGTTTCG-TGG-TG---T----AT---GAG-TCATT--CAG--T-AGCAT
* * *
1966719 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
562 ACGAAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCG
* * * * * * ** * *
1966784 GGCATATGCTGGTGCCACATTTTTCTTCGTCAGGGCACCAACGTCGGATCATCATCGGAGAACTT
626 AGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCT
* ** * * * * *
1966849 GACCAGCGGCATTGGCTTTTCGACGATCAGGGGGGCCGAGGGGTGTGCACACATGATGTGAGATG
691 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
1966914 GGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTTGAGAACTCACA-CCC
756 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
1966978 CTCAAAGAGCATTTGAGATTGTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAATTAG
821 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
1967040 GGACACTTTTTGCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
** * * *
1967104 CATGGAAACAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAACAAA
66 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-AAA
* * ** * *
1967168 TTTTAAAAAATCCCGAACCGCAAAAATTTTTGAAAATCCTGAAAAATAAAAAACGAGTCGTCTTG
129 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* ** * * *
1967233 CCATGAAACTTCACGTGAAGGCTTAAGGGACTAGAGTATGAATTTACATGCCATAAAAATGGGAA
194 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
1967298 TGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
259 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
** ** **
1967363 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCGCCTGC-CCACTCGTTTCGTCGATTTATCT
324 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCCCGCCGTTCGTTTCGTCGA-TTGGCT
* * * ** * *
1967425 TAGGCATACGGAGTTCATTCCTAGTCTAAGATGGGACTGGACCAAGGGTTACGGCAGTAGGATCG
388 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGGATCG
* * * ** * * * * *
1967490 GTAGCACTTTGAGGGGGATGCGACCGATCCTCGACTTGCGCATCCCTCCCCTCTGGCCTGCTGAG
453 GCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** *
1967555 CGGCCGTACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGG
518 CGCCCGCACGCTCGTTTCGT-GG-TG---T----AT---GAG-TCATT--CAG--T-AGCATACG
* * *
1967620 GAGTTCACTCCCAGCCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
565 AAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
* * * * * *
1967685 ATGTGCTGGTGCTACATTTTTCTTCCT-TGGGCACCATC-ACTGGAGCATCGTCAGAGAAGCTGA
629 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCAGAGAACCTGA
*
1967748 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGG
693 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
1967812 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
758 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
1967877 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
823 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * *
1967937 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATGTTTTTGTG
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
*
1968002 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAATG
66 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-A
** * * ** * *
1968066 TTTTAAAAAATCCCGAATAGCAAATAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
129 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
1968131 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
194 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
1968196 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCGTATTGATCCACGGCTTGCGC
259 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGC
* * * * ** * *
1968261 ATCCCGTGTCTCTGGCCGACGTAATGCCCG-C-TCG--CCCGTCCACTCATTTCGTCGGTTGGCT
324 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCCCG-CCGTTCGTTTCGTCGATTGGCT
* ** * * * *
1968322 TAGGCATACAGCCTTCATTCTCAG-CTAAGATCAGACTGAACTAAGGGTTGTGGCAGCAGGATCG
388 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGGATCG
* ** * * ** * * ** *
1968386 ACAGCACACAGAAGGGGATCCGATCGATCCCCAGCTTGCGCAGCCTACCCCTCTGGCCAGCTGAG
453 GCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
1968451 CGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGCATATG
518 CGCCCGCACGCTCGTTTC----G-TG--GT--G--TAT-GAG-TCATT--CA--GT-AGCATACG
* ** * *
1968516 GAGTTCATTCACAGTCTGGGATCGGACCGGACAGAGGGTTACGGTAGCACATGCTGGGCTCGAGC
565 AAGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
* *
1968581 ATGTGCTGGTGTCGCATTTTTC-T--TC---G------C--CGGAGCAT---C-----A-C--A-
629 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
* * *
1968620 ------TA-TGGGGTTCTGACGATCGGGGGGGCC-GGGGG-GTGCGCACATGATGTGGGATGGGT
694 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1968676 GCCGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATT
759 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
1968741 AAAGAGCGTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCG
824 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
1968800 AGACACTTTTTTCAAATGGTCAAAAAATCTTGTGCACTTTGAGTTTTTAGCTGAATTTTTTT-TT
1 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * * ** *
1968864 CACTTGCCAAAAAAAATACAAAGATCATGTCTACTAAGTTTGGGCCCAAAGGTCGTTTCGAAAAA
66 CA--TGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
1968929 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
128 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
1968994 GCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
193 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1969059 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
258 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
* * * * * *
1969124 CATCCCGTCTCTCTAGTCGGCATAGTGCCTGCCCGCC-CGCCCGCTTGCTT-GTTTCGTC-AGTT
323 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCGCCCCCGC-CG-TTCGTTTCGTCGA-TT
* * * * * * * * *
1969186 GGCTTAGGCATACGAAGATCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTACAGTAGCAGG
384 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGG
* *
1969251 ATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCC
449 ATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
1969305 ACCCGCCTGC
Statistics
Matches: 7392, Mismatches: 942, Indels: 440
0.84 0.11 0.05
Matches are distributed among these distances:
862 3 0.00
863 196 0.03
864 266 0.04
865 16 0.00
866 1 0.00
867 2 0.00
868 35 0.00
869 149 0.02
870 13 0.00
871 1 0.00
872 2 0.00
874 1 0.00
875 3 0.00
877 5 0.00
878 27 0.00
879 15 0.00
880 609 0.08
881 8 0.00
882 2 0.00
883 87 0.01
884 356 0.05
885 52 0.01
886 24 0.00
887 5 0.00
888 480 0.06
889 196 0.03
890 93 0.01
891 15 0.00
892 5 0.00
893 4 0.00
894 4 0.00
895 212 0.03
896 491 0.07
897 224 0.03
898 721 0.10
899 411 0.06
900 103 0.01
901 449 0.06
902 192 0.03
903 308 0.04
904 70 0.01
905 65 0.01
906 246 0.03
907 426 0.06
908 62 0.01
909 43 0.01
910 20 0.00
911 41 0.01
912 158 0.02
913 365 0.05
914 103 0.01
915 2 0.00
917 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCCCGCCGTTCGTTTCGTCGATTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGTGTATGAGTCATTCAGTAGCATACGAAGTTCATTCCAGTCTAAGAT
CGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
TTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
Found at i:1964033 original size:26 final size:26
Alignment explanation
Indices: 1963999--1964051 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1963989 GTTGACTTAG
* *
1963999 GCATGCGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
*
1964025 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
1964051 G
1 G
1964052 ATTGGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGCCTAA
Found at i:1964923 original size:26 final size:26
Alignment explanation
Indices: 1964887--1964939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1964877 GTTGACTTAG
1964887 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* * *
1964913 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
1964939 G
1 G
1964940 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:1965823 original size:26 final size:26
Alignment explanation
Indices: 1965787--1965842 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
1965777 TGGGTTGACT
1965787 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATTCCCAATC
*
1965813 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAATC
1965839 TAAG
1 TAAG
1965843 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAATC
Found at i:1966725 original size:26 final size:26
Alignment explanation
Indices: 1966689--1966741 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1966679 GTTGACTTAG
1966689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1966715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1966741 G
1 G
1966742 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1967616 original size:26 final size:26
Alignment explanation
Indices: 1967587--1967639 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1967577 GTTGACTTAG
* *
1967587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGCCTAA
*
1967613 GCATAGGGAGTTCACTCCCAGCCTAA
1 GCATACGGAGTTCACTCCCAGCCTAA
1967639 G
1 G
1967640 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGCCTAA
Found at i:1969414 original size:144 final size:142
Alignment explanation
Indices: 1969154--1969447 Score: 399
Period size: 144 Copynumber: 2.1 Consensus size: 142
1969144 CATAGTGCCT
* * * * *
1969154 GCCCGCCCGCCCGCTTGCTTGTTTCGTCAGTTGGCTTAGGCATACGAAGATCATTCCCAGTCTAA
1 GCCCGCCCACCCGCCTGCTCGTTTCATCAGTTAGCTTAGGCATACGAAGATCATTCCCAGTCTAA
* * ** *
1969219 GATTGAACTGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
66 GATGGAACTGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACACAGAGGGGGACACGACCGATC
*
1969284 CCTGGCTTGCGCA
131 CCCGGCTTG-GCA
* * * * *
1969297 TCCCGCCCACCCGCCTGCTCGTTTCATCAGTTTATCTTAGGCATAGGGAGTTCATTCCCAGTCTA
1 GCCCGCCCACCCGCCTGCTCGTTTCATCAG-TTAGCTTAGGCATACGAAGATCATTCCCAGTCTA
* * *
1969362 AGATGGGATTGGACCGAGGGTTACAGCAGCAGGATCGGTAGCACACAGAGGGGGACACGACCGAT
65 AGATGGAACTGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACACAGAGGGGGACACGACCGAT
1969427 CCCCGGCTTGGCA
130 CCCCGGCTTGGCA
1969440 GCCCGCCC
1 GCCCGCCC
1969448 CTCTGGCCGG
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
143 35 0.27
144 95 0.73
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.20
Consensus pattern (142 bp):
GCCCGCCCACCCGCCTGCTCGTTTCATCAGTTAGCTTAGGCATACGAAGATCATTCCCAGTCTAA
GATGGAACTGGACCGAGGGTTACAGCAGCAGGATCGGCAGCACACAGAGGGGGACACGACCGATC
CCCGGCTTGGCA
Found at i:1969531 original size:26 final size:26
Alignment explanation
Indices: 1969495--1969547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1969485 GTTGACCTAG
*
1969495 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCACAATCTAA
*
1969521 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATTCACAATCTAA
1969547 G
1 G
1969548 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCACAATCTAA
Found at i:1970423 original size:26 final size:26
Alignment explanation
Indices: 1970394--1970446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1970384 GTTGACTTAG
1970394 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1970420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1970446 G
1 G
1970447 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1973258 original size:900 final size:898
Alignment explanation
Indices: 1971511--1973369 Score: 2702
Period size: 900 Copynumber: 2.1 Consensus size: 898
1971501 CCCGCACGCT
* * *
1971511 CGCCTGCCCGCTCGTTTCGTCTGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
1971576 CCAGACCAAGAGTTATGGTAGCAGGATTGGCATCACGCAGAGGGGAACCCTGCCGATCCCCGGCT
66 CCAGACCAAGAGTTACGGCAGCAGGATCGGCAGCACGAAAAGGGGAACCCGGCCGATCCCCGGCT
* * * * *
1971641 TGCGCATCCCGCCCTTTTGGCAGGCAGAGCGCCCGCATGCTCGTTTGGTGGGTTGACTTAGGCAT
131 TGCGCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * * ** *
1971706 ACGGAGATCATTCCTAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAG
196 ACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAG
** *
1971771 GGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACC
261 GGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGCGCACC
* * * *
1971836 ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGTACTGGGGTTCCAGCGATCGGGGGGGTCGG
326 ATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCACTGGGGTTCCAGCGATCAGGGGGCTCGG
* * *
1971901 GGGGTGTGCGTACATGATGTGCAATGAGTGATTGTACTTGGCCCTTATATTGGCCCCCTATCCCT
391 GGGGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1971966 CATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGC
456 CATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGC
1972031 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGA
521 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGA
*
1972096 GTTTTTAGCTGAATTTGTTTGTGCACGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTAGGG
586 GTTTTTAGCTGAATTTGTTTGTGCACACCAAAAAAAATACAAAGATCACGTCTACCAAGTTAGGG
* * * **
1972161 CCAGAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
651 CCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAA
*
1972226 AATTCAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
716 AATACAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
* *
1972291 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAGCAATCACC
781 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACC
* *
1972356 CTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
846 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
* * *
1972409 CGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
1972474 CCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGAAAAGAGGG-ACCCGGTCGATCCCCGGG
66 CCAGACCAAGAGTTACGGCAGCAGGATCGGCAGCACGAAAAG-GGGAACCCGGCCGATCCCCGGC
* **
1972538 TT-CTGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGC
130 TTGC-GCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGC
* * *
1972602 ATACAGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCA
194 ATACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCA
* * * *
1972667 AGGGTTGCAGTGTAGCACATGTTGGGCT-TGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GA
259 AGGGTTGCA--GCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGCCAG-
* * * * * *
1972730 CGCACCATCGTCGGAGCATCATCGGTGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGG
320 CGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCACTGGGGTTCCAGCGATCAGGGG
* * * * *
1972795 GCT-GGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTATTTGGGCCTTATATTGGTCCCCT
385 GCTCGGGGGGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCT
*
1972859 CTCCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
450 ATCCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
1972924 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATTGTCACAAAATCTTGTACA
515 ACCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACA
* * * *
1972989 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAAAAAAAAATACAAGGATCATGTCTACCAG
580 CTTCGAGTTTTTAGCTGAATTTGTTTGTGCACACC-AAAAAAAATACAAAGATCACGTCTACCAA
* **
1973054 GTTTGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAAT
644 GTTAGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAAT
* * * *
1973119 CGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
709 CGTGAAAAATACAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
**
1973184 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
774 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
1973249 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCC
839 AACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
* * * *
1973309 CACCCGTCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGAT
1973370 GGGATCGGAT
Statistics
Matches: 851, Mismatches: 103, Indels: 12
0.88 0.11 0.01
Matches are distributed among these distances:
897 1 0.00
898 224 0.26
899 214 0.25
900 412 0.48
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCAAGAGTTACGGCAGCAGGATCGGCAGCACGAAAAGGGGAACCCGGCCGATCCCCGGCT
TGCGCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
ACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAG
GGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGCGCACC
ATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCACTGGGGTTCCAGCGATCAGGGGGCTCGG
GGGGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGC
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTGTTTGTGCACACCAAAAAAAATACAAAGATCACGTCTACCAAGTTAGGG
CCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAA
AATACAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
Found at i:1975034 original size:26 final size:26
Alignment explanation
Indices: 1974991--1975067 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
1974981 TTAACTTAGG
1974991 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
* * *
1975017 CGTATGTAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
1975043 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1975068 GATCAGACCA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1976315 original size:898 final size:898
Alignment explanation
Indices: 1973402--1980430 Score: 8485
Period size: 898 Copynumber: 7.9 Consensus size: 898
1973392 GGTTCCGGCA
* * * *
1973402 ATCGGAGGGG-CGGGGGGGTGTGCGCAGATGATGTGCGATGTGTGCTGGTACTTGGCCCATATAT
1 ATCGG-GGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1973466 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
1973531 AGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
1973595 ATCTTATACACTTCGGGTTTTTTAGTTGAATTTTTTCTATGCATG-CAATAAAAAATACAA-GAT
194 ATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTT-TGTGCATGCCAACAAAAAATACAAGGAT
* * * * * * *
1973658 CATGTCTAGCAAGTTT-GGGCCAAAACACCATCTG-AAAAATTTTTAAAAATCTCGAACCGTAAA
257 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
** * * * **
1973721 AAGTTTTGAAAATCGTG-AAAATAGAAAACGTGTCATCTTG-CATGAAACTTCTTGTGAA-GCTT
322 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
1973783 AAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGTAGAAATATGAAGA-GT
387 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
** * * *
1973847 GCC-AAACCCACCTACCACCCTATCGATTTACGGCTTGCGCATCCTGTCTCTCTGGCCGACCTAG
452 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
1973911 TGCCCGCCCGTCCG-C-CCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
517 TGCCCGCCCGCCCGCCGCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
1973974 TAAGATCAGACCAGACTGAGGGTTACGATAGCAGGATCGGCAACACGCAGAGGGGGACCTGACGG
582 TAAGATCAGA-C---CTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGGCTG
* ** * * *
1974039 ATCCTCGGCTTGCGCATCTTGCCCCTCTGGTCGGCTGAGCGCCCGTACTCTCATTTCGTGGGTTG
643 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * * **
1974104 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCTAGTCTAAGATTAGA
708 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * ** *
1974169 CCAGATCGAGGGATGCGGCAGCACATGCTGGGCTTGGGCATGCACTGGTGCCGTATTTTTCTTCG
773 TCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * ** *
1974234 TCGGGGCACCATCGTCGGGGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCC-AGCG
838 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGA-TG
* *
1974295 ATCAGGGGGGCCCGGGGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATA
1 ATC-GGGGGG-CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
1974360 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTA
64 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
1974425 CAGGTTTGCTACTAGTAGCCATTATAGTGTCTAAAATGGGGACACTTCTTTCAAATGGTCACAAA
129 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
1974490 ATCTTGTACTCTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCA
194 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCA
* * * *
1974554 AGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
259 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* ** * * *
1974619 GTTTTAAAAATGGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTTACGTGAAGGCTTAA
324 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
1974684 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGC
389 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* ** * * * *
1974749 CTAAACCCACCTACCACCCCT-TCGATTCGTGGCTTGCGCATCCTGTCTTTTTGGCCAGCGTAGT
454 CTAAACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * * ** **
1974813 GCCTGCCCGCTCGCTCGCCCGATAGTTTCCTCGGTCAGCTTAGGCATACGGAGTTCATTCCTGGT
518 GCCCGCCCGCCCGC-CG-CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * *
1974878 CTAAGATCAAACTGGACTAAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCC
581 CTAAGATCAGAC----CTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGG--
* ** * * * * ** * * * * **** ** ** * *
1974943 CT-CTGGCTGGC-TGAGC-GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
640 CTGATCCCCGGCTTGCGCATCCCGC-CCCTC-TGGC-CGGCTGAGCGCCCGCACGCTCATTTCGT
***** * ** * * * * *
1975005 TCCCAGTC-TAACCGTATGTAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAG
702 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * *
1975069 ATCAGACCAGATCGAGGGTTGCGACAGCACATGCTCGGCTCGGGCATGTGCTGGTGTCGCATTTT
767 ATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
** * * * **
1975134 TCTTCACCGGTGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGG-CGACATCAGGGTTCCG
832 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCG-CATTGGGGTTCCG
1975198 ATG
896 ATG
* * * * * *
1975201 ATCGGGGGGGCC-GGGGGATGTGCGCACATGATATGTGATGGGTGCTGGAACTTGGCCATTATAT
1 ATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
1975265 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
1975330 AGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
1975395 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTCTGCATGCCAACAAAAAA-ACAAGGATCAT
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCAC
* * *
1975459 GTCTAACAAGTTTGGAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
260 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* * * *
1975524 TTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAG
325 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
1975589 GGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
390 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
1975654 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
455 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
**
1975719 CCGCCCGCCCGCCTGCACGTTCGTTTCGTCGACTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
520 CCGCCCGCCCGCC-GC-CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * * **
1975784 AAGATCAGATC-GAGGGTTATAGCAGCAGGATTGGTAGCATGCAGAATGGGACCCAACTGATCCC
583 AAGATCAGACCTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGGCTGATCCC
* * * * * ** *
1975848 CGGTTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCTCGTACGCTTGTTTCGTCGGTTGACTTA
648 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
*
1975913 GGCATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
713 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
** ** * * * * *
1975978 CCGAGCATTGCGGTAGCATATGCTGGGCTCGAGCATTTGCTGGTGCCACATTTTTCTTCATCGGG
778 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
*
1976043 GCACCATCGTCGGAGCATTACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGATG
843 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGATG
*
1976099 ATCGGGGGGCCGGGGGTGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
1976164 AGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCGCTCAAAGAGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
1976229 AGTTTGCTGCTAGTAACCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
1976294 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTACCAA-AAAAAATACAAGGATCACG
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACG
* * *
1976358 TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAATCGCAAAAAGT
261 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* * * * *
1976423 TTCAAATATCGTGAAAAATAGAAAACGAGTCATCTTGCTATGAAACTTCACGTCAAGGCTTAAGG
326 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
1976488 GACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
391 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
*
1976553 AAACCCACCTACCACCCTATCGATCCACGGCTT-CTGCATCCCGTCTC-CTTGGCTGGCGTAGTG
456 AAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTC-TGGCCGGCGTAGTG
* * * *
1976616 CCCACCCGCCCGTCC-AC--TCGTTTCATCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCT
519 CCCGCCCGCCCG-CCGCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * ** *
1976678 AAGATCAGACCGAACAGAGGGTTACAGTAGTAGGATCAGCAGCACATAG-AGTGGGACCCGGTTG
583 AAGATCAGA-C---CTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAG-GGGACCCGGCTG
* * * *
1976742 ATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGCTTAGCGCCCGCACGCTCATTTCGTGGTTTG
643 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * * *
1976807 ACTTAGGCATACGGAGTTCATTTCCAGTCTAAGAATACAAAGTTCATTCCCAATCTAAGATTGGA
708 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
1976872 CCAGACCGAGGGTTGC-ATCAGCACATGTTGGGCTTGGGCATGTACTGGTGCCGCATTTTTCTTC
773 TCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * **
1976936 GTCGGCGCA-CA--GTC---G--T---CGGAGAACCTGACTGGCCGCATTGGGGTTCCGGCG
837 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGATG
* * ** *
1976987 ATCGGGGGGCC-GGGGGGTGTGCACACAAGATGTGTGATGACTGCTGGTACATGGCCCTTATATT
1 ATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
1977051 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTCAGATTTTATA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
1977116 GGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
1977181 CTTGTACACTTCCAGTTTTTTGCTGAATTTTTTTGTACATGCCAAC-AAAAATACAAGGATCACG
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACG
* * **
1977245 TCTACCAAGTTTGGGCCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAATTGCAAAAAGT
261 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
* *
1977310 TTCAAAAATCATGAGAAAA-AAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAG
326 TTCAAAAATCATGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
1977374 GAACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCC
390 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
** * *
1977439 TAAACCCACCTACCACTGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCTGCGTAGT--
455 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
1977502 --GCCCGCCCG-C-CCATTCGTTCCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAA
520 CCGCCCGCCCGCCGCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1977563 GATCAGACCAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACACAG-AGAGGGACCCGGCTAAT
585 GATCAGA-C---CTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAG-GGGACCCGGCTGAT
* * * *
1977627 CCACGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCCCGCTCATTTCGTGGGTTGAC
645 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
* * * *
1977692 TTAGGCATACGGAGTTCATTCCCAGTCGAAGCATATAGAGTTCATTCCCAATCTAAGATCGGATT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC
* * *
1977757 GGATCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
775 GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* ** * *
1977822 GGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCGTTGGGGTTCCGGTG
840 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGATG
* * *
1977881 ATTGGGGGGCCGGGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATAT
1 ATCGGGGGGCC-GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
1977946 TGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
1978011 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
1978076 TCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT-TGCATGCCAAC-AAAAATAGAAGGATCAC
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCAC
* * * * *
1978139 GTCTACCAAGTTTGGGG-CAAAAATCTTTTCGAAAAAATTTTAAAAAATC-CTGAACTGTAAAAA
260 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAA
**
1978202 GTTTTGAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 GTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-
* * * *
1978266 AAGGGACCATGGTATGAATTTAGAAGCCATAAAAAT-GCATTGGCATGGAGAAATATGAAGATGT
387 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * *
1978330 GCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCACATCCCGTCTCT-TGCGTCGACGTA
452 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCGGCGTA
* * * * *
1978394 GTGCCCACCCGCCCGTCCGTCCGCTGGTTTCGTCGGTTAGCTTAGGCATACGGCGTTCATTCCCA
516 GTGCCCGCCCGCCCG-CCG-CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * **
1978459 GTCTAAGATTGGACCAGACC-GAGGGTTGCGGGTAGCAGGATTGGCAGCACGTAGAGGGGGATTC
579 GTCTAAGA-T----CAGACCTGAGGGTTAC-GGTAGCAGGATCGGCAGCACGCAGAAGGGGACCC
* * * * * * * * * * *
1978523 -GATCGAT-CCTGGCCTTGCACATGCCGCCCCTCTAGCCGGTTGAGCACTCGTACTCTCGTTTCG
638 GGCT-GATCCCCGG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
1978586 T-GG--G--TT-GG----C----TT-A----C-G-C--A--ATAC-GAAGTTCATTCCCAGTCTA
701 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTA
* * * * * **
1978625 AGATCGGATCGGA-CGAGTGCTGCCGGCAGCACATGCTGGGCTCAGGCTTGTGCTGGTGTTGCAT
765 AGATCGGATCGGACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
** * ** * ** **
1978689 TTTTCTTCACCGGGTCACCATCACCGGACCATCGTCGGAGAACCTGACCGGCATCATTGGGGTTC
829 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTC
1978754 CGATG
894 CGATG
* *
1978759 ATCGGGGGGCCGGGGGGCCGGGGCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTT
1 AT--------CGGGGGGCC---G-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTT
* * *
1978824 GGCCCTTTTATTGG-CCCC-AGTCCCTCATCAAACCTCGAGAACTCAAACCCCATTAAAGAGCAT
54 GGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
1978887 TTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
118 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * ** *
1978952 ATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTATGCATGTAAAAAAAAAA
183 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAA
*
1979017 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCA
248 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* ** * *
1979082 AACCGTAAAAAGTTTTGAAAATCAGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
313 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
1979147 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAAAAATA
378 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* *
1979212 TGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGG
443 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** *
1979277 CCGGTGTAGTGCCCGCCCG--C-CCG-C--TCGTTTCGTCAATTGGCTTAGGCATATGGAGTTCA
508 CCGGCGTAGTGCCCGCCCGCCCGCCGCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
1979336 TCCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCATGCAG-AGAGG
573 TTCCCAGTCTAAGATCAGA-C---CTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAG-GG
* * * * *
1979400 GACCCGGCTAATCCCCGGCTTGTGCATCCTGCCCCTTTGGTCGGCTGAGCGCCCGCACGCTCATT
633 GACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
* *
1979465 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCGAAGCATACAGAGTTCATTCCCAGTC
698 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
* *
1979530 TAAGATCGGATTGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
763 TAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
1979595 TTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCACCGGAGAACCTGACCGGCGGCGTTGGGGTT
828 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTT
**
1979660 CCGGCG
893 CCGATG
* * * * *
1979666 ATCGGGGGGGCCAGCGGGGTGTGCGCAAATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 ATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1979731 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
1979796 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCCTGAAATGGGGACACTTTTTTC-AATGGTCACAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
1979860 ATCTTGAACACTTCGAATTTTTAGTTGAA-TATTTTGTGCATGCCAACAAAAAGTACAAGGATCA
194 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCA
* * * *
1979924 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATGTAAAAAATCCCGAACCGCAAAAG
259 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA
* * *
1979988 GTTTCGAAAATCCTGAAAAATAG-AAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAA
324 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
1980052 GGGACCATTATATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGAAGATGTGC
389 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
1980117 CTAAACCAACCTA-CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTG
454 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
1980181 CCCGCCCGCCCGCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
519 CCCGCCCGCCCGCCG-CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * * * *
1980246 AAGATCAGATCGGACCGAGGTTGCGACAGTAGGATCGGCATCACGCAG-AGGGGATCCGGCCGAT
583 AAGATCAGACCTGA--G-GGTTACGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGGCTGAT
** * *
1980310 CATCGGACTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCTGCACGCTC-GTTCGTGGGTTGA
645 CCCCGG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
* *
1980373 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGGTCTAA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA-GTCTAA
1980431 TATGTGATGG
Statistics
Matches: 5261, Mismatches: 714, Indels: 317
0.84 0.11 0.05
Matches are distributed among these distances:
877 8 0.00
878 129 0.02
879 1 0.00
880 1 0.00
881 3 0.00
882 69 0.01
883 337 0.06
884 4 0.00
885 2 0.00
886 11 0.00
887 454 0.09
888 203 0.04
889 62 0.01
890 67 0.01
891 188 0.04
892 5 0.00
893 90 0.02
894 409 0.08
895 319 0.06
896 364 0.07
897 236 0.04
898 720 0.14
899 355 0.07
900 71 0.01
901 60 0.01
902 65 0.01
903 76 0.01
904 513 0.10
905 110 0.02
906 174 0.03
907 147 0.03
908 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
ATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCGCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAAGGGGACCCGGCTGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGTCGGAGCATCACCGGAGAACCTGACCGGCCGCATTGGGGTTCCGATG
Found at i:1980407 original size:26 final size:27
Alignment explanation
Indices: 1980378--1980430 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
1980368 GTTGACTTAG
1980378 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATTCCCAGGTCTAA
*
1980404 GCATACGGAGTTCATTTCCAGGTCTAA
1 GCATACGGAGTTCATTCCCAGGTCTAA
1980431 TATGTGATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGGTCTAA
Found at i:1981139 original size:26 final size:26
Alignment explanation
Indices: 1981109--1981159 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1981099 GTTGACTTAG
*
1981109 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
* *
1981135 GCATACGGACTTCATTCTCAGTCTA
1 GCATACGAACTTCATTCCCAGTCTA
1981160 TGATCGGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:1982934 original size:26 final size:26
Alignment explanation
Indices: 1982898--1982950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1982888 GTTGACTTAG
*
1982898 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1982924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1982950 G
1 G
1982951 ATCAGACGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1983094 original size:26 final size:26
Alignment explanation
Indices: 1983058--1983110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1983048 GTTGACTTAG
1983058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1983084 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1983110 G
1 G
1983111 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1986050 original size:894 final size:895
Alignment explanation
Indices: 1983954--1987549 Score: 4697
Period size: 894 Copynumber: 4.1 Consensus size: 895
1983944 GTTGACTTAG
*
1983954 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTAGG
* *
1984019 CTC-AGGCATGCGCTGGTGCCACATTTTTCTTCA-TCGGGGCACCATCGCC-GAGCATCACCGGA
66 CTCGA-GCATGTGCTGGTGCCACATTTTTCTTCACT-GGGGCACCATCGCCGGAGCATCGCC-GA
1984081 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTCCGCACATGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT-CGCACATGATG
* *
1984145 TGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1984210 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1984275 ATGGGGACACTTTGTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
* *
1984340 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAA
387 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAA
* * *
1984405 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
* * *
1984470 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGCATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * * *
1984535 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATACATGGCTTG
582 CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
** * *
1984600 CGCATCCCGTCTCTCTGGCC-GGCATAGTGCCCGCCCGCCCGCTCG-TTCGTCGGTTGGCTTAGG
647 CGCATCCCGTCTCTCTGGCCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
* * ** ** * * *
1984663 CATACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACCAAATGTTGCGATAGTAGGATCAGCAA
712 CATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCAACAG
* * * ** *
1984728 CACGTAGAGGGGGACCTGACCGATCCTCGGCTTACACATCCTGCCCCTCTGGCCGGCTGAGCGCT
777 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCC
** *
1984793 CGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAA-ATTTCATT-CCAGTCTAA
842 CGCACGCTCGTTTCATGGGTTGACTTAGGCATA-AAGAGTTCATTCCCAGTCTAA
* * * *
1984846 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAAACCGAGGGTTGCAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GAACCGAGGGTTGCGGCAGCACATGCTAG
** * * * *
1984910 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTACTGGGGCACCATCGCCGAAGCATTGCTTGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGC-CGAG
* *
1984975 AACCTGACCGGCGGCATTGGGGTTTCGGA-GATCGGGGGGGCCGGTGGGGGTGTGCGCACATGAT
129 AACCTGACCGACGGCATTGGGG-TTCCGACGATCGGGGGGGCCGG-GGGGGTGT-CGCACATGAT
*
1985039 GTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
1985104 CACATCCCTTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCAAG-AGCCATTAAAGTTTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
1985168 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* *
1985233 TTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAA
386 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
* *
1985298 AAAATTTTGAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
*
1985363 GTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
*
1985428 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
581 GCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* *
1985493 GCGCATCCCGTCTCTCTGG-TGGGTGTAGTGCCCGTCCGCCCGCTCATTTCGTCAGTTGGCTTAG
646 GCGCATCCCGTCTCTCTGGCCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * *
1985557 GCATAC-GAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCAACA
711 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCAACA
* * * * * *
1985621 GCACGTAGAGCGGGACCCGATCGATCCCCGTCTTACGGATCCCACACCTCTGGCCGACTGAGCGC
776 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
1985686 CCGTACGCTCGTTTCGTGGGTTGACTTCGGCATAAAGAGTTCATTCCCAGTCTAA
841 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAA
* * * * * *
1985741 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGCTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTAGG
* ** * * *
1985806 CT-GGGCCATGTGCTGGCACCGCATTTTTCTTCACTGTGGCACCATCGTCGGAGCATCGCCAGAG
66 CTCGAG-CATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCC-GAG
* **
1985870 AACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGAAGTGT-GCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTCGCACATGATGT
*
1985934 GCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1985999 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1986064 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
* **
1986129 ATGCATGCCAACAAAAACT-CAAGGATCACGTCTACCAAGTTTAGCACCAAAACTCCTTCTGAAA
388 ATGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAA
* * *
1986193 AAATTTTGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTG
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
* *
1986258 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTT-ACAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * *
1986322 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTG
582 CATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * *
1986387 CGCATCCCGTTTCTCTGGCCGACACAGTGCTCGCCCGCCCGTCGGCTCGCTCGTTTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCG----GGTG-TAG--TGCCCGTCCGCCCGCTCGTTTCGTCAGTTG
* * ** **
1986452 GCTTAGGCATA-GGAGTTAATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTATGGCAGC---A
705 GCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGA
** *
1986513 T-----G--C-TA-AGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
770 TCAACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCT
* * *
1986569 GAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCAT-ACGAAGTTCATTCCCA-T-T--
835 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAAG-AGTTCATTCCCAGTCTAA
*
1986626 -C-TA---AG---------A-TC--AGATC-G---G-ACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
1986669 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCG-AGA
* * * * * *
1986734 ACCTGACTGACGGCATTGTGGTTTCGATGATTGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT-CGCACATGATGTG
* * *
1986798 CGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1986863 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1986928 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
* ** * *
1986993 TGCATGCCAACAAAGTTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAA
* * * * ** * * * *
1987058 ATTTTAAAAAAACCTGAATCGTAAAAA-TTTTGAAAATCGTGAAAAACAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* *
1987122 G-CATTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
519 GCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
* * * * * *
1987186 ACTGGCACATAAAAATATGAAGACGTGCCTAGACCCAGCTACCACCCTATCGATCCAAGGCTTGC
583 ATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * *
1987251 GCATCCTGTCTCTCTGG-C-TG-GCA-T---AGT--GCCCGCTTGTTTCGTCGGTTGGCTTAGGC
648 GCATCCCGTCTCTCTGGCCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
* * * * * *
1987307 ATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACCAAGGGTTGCGGCAGTAGGATCGACAGC
713 ATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCAACAGC
* * * * *
1987372 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CTATCTCCTCTGGCCGGCTGAGCGCC
778 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCA-CCCCTCTGGCCGGCTGAGCGCC
* * * ** *
1987436 CGCACGCTCGTTCCATGGGTTGACTCATGCATACGGAGATCA-TCCCAGTCTAA
842 CGCACGCTCGTTTCATGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAA
*
1987489 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGC
1987550 CGGGCTCGGG
Statistics
Matches: 2367, Mismatches: 260, Indels: 161
0.85 0.09 0.06
Matches are distributed among these distances:
847 29 0.01
848 39 0.02
849 2 0.00
851 2 0.00
856 2 0.00
857 1 0.00
858 1 0.00
859 7 0.00
860 84 0.04
861 11 0.00
862 76 0.03
863 468 0.20
864 4 0.00
865 2 0.00
867 1 0.00
868 7 0.00
870 2 0.00
871 1 0.00
877 1 0.00
878 2 0.00
880 7 0.00
881 1 0.00
883 2 0.00
884 2 0.00
885 23 0.01
887 1 0.00
888 3 0.00
889 88 0.04
890 2 0.00
891 1 0.00
892 100 0.04
893 255 0.11
894 752 0.32
895 299 0.13
896 3 0.00
898 5 0.00
899 2 0.00
901 79 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGCCGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
GGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
TCCCGTCTCTCTGGCCGGGTGTAGTGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
CGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCAACAGCACG
TAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTCTAA
Found at i:1987498 original size:25 final size:26
Alignment explanation
Indices: 1987464--1987515 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1987454 GTTGACTCAT
1987464 GCATACGGAGATCA-TCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
1987489 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
1987515 G
1 G
1987516 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:1989217 original size:26 final size:26
Alignment explanation
Indices: 1989181--1989231 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1989171 TGAATTAGGT
1989181 ATACGAAGTTCATTCCTAGTCTAAGC
1 ATACGAAGTTCATTCCTAGTCTAAGC
*
1989207 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCTAGTCTAAG
1989232 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGC
Found at i:1990425 original size:26 final size:26
Alignment explanation
Indices: 1990379--1990429 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1990369 TTGACCTAGG
* *
1990379 CATACGGAGCTCTTTCTCAGTCTAAT
1 CATACGGAGCTCATTCCCAGTCTAAT
*
1990405 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGCTCATTCCCAGTCTAA
1990430 GATTAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAT
Found at i:1990620 original size:369 final size:367
Alignment explanation
Indices: 1989937--1990645 Score: 980
Period size: 369 Copynumber: 1.9 Consensus size: 367
1989927 GGGACCCCGA
* * * * * *
1989937 CCGATCCCGGCTTGCGCAACTTGCCCCTCTGGCCGGCTGAGCGCCCACACGTTGTTTCGTTGGTT
1 CCGATCCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACGTCGTTTCGTGGGTT
* * * *
1990002 GACCTAGGCGTGAGAAGTTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
66 GACCTAGGCATGAGAAGTCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
1990067 GACGGACCGAGGGTTTTCATACCACAATGTTGGGCTCGGCCATGTGCTGGTGCCACATTTTTCTT
131 GACAGACCGAGGGTTTGCACACCACAATGCTGGGCTCGGCCATGTGCTGGTGCCACATTTTTCTT
** * * *
1990132 TGTCGAGGCACCATCGTCGGACATCGCCAGAGAACCTGACCGGCAGCATTGGGTTCCGATGAATC
196 CATCGAGGCACCATCGCCGGACATCGCCAGAGAACCTAACCAGCAGCATTGGGTTCCGATGAATC
* * *
1990197 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGC
261 GGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGC
1990262 CCCCTATCCCTCATCTTGCGCATCCCCGTGTCTCTCGTCCGG
326 CCCCTATCCCTCATCTTGCGCATCCCCGTGTCTCTCGTCCGG
* *
1990304 CCGATCCCCGGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
1 CCGAT-CCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACG-TCGTTTCGTGGG
* * * *
1990369 TTGACCTAGGCAT-ACGGAG-CTCTTTCTCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGA
64 TTGACCTAGGCATGA-GAAGTCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * **
1990432 TTAGACCAGACCGAGGG-TTGCGACAGCAC-ATGCTGGGCTCGAG-CATGTGTTGGTGCCATTTT
128 TCAGA-CAGACCGAGGGTTTGC-ACACCACAATGCTGGGCTCG-GCCATGTGCTGGTGCCACATT
*
1990494 TTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTAACCAGCAGCATTGGGGTTCC
190 TTTCTTCATCGAGGCACCATCGCCGGA-CATCGCCAGAGAACCTAACCAGCAGCATT-GGGTTCC
*
1990559 GGTG-ATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
253 GATGAATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
*
1990623 ATATTATCCCCCTATCCCTCATC
318 ATATTAGCCCCCTATCCCTCATC
1990646 AAACATCGAG
Statistics
Matches: 298, Mismatches: 36, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
367 5 0.02
368 136 0.46
369 147 0.49
370 10 0.03
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.26
Consensus pattern (367 bp):
CCGATCCCGGCTTACGCAACCTACCCCTCTGGCCGGCTGAGCACCCACACGTCGTTTCGTGGGTT
GACCTAGGCATGAGAAGTCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACAGACCGAGGGTTTGCACACCACAATGCTGGGCTCGGCCATGTGCTGGTGCCACATTTTTCTT
CATCGAGGCACCATCGCCGGACATCGCCAGAGAACCTAACCAGCAGCATTGGGTTCCGATGAATC
GGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGC
CCCCTATCCCTCATCTTGCGCATCCCCGTGTCTCTCGTCCGG
Found at i:1991303 original size:26 final size:26
Alignment explanation
Indices: 1991274--1991326 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1991264 GTTGACTTAG
1991274 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1991300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1991326 G
1 G
1991327 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1991853 original size:26 final size:26
Alignment explanation
Indices: 1991823--1991875 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1991813 ATTGACTTAC
1991823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1991849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1991875 G
1 G
1991876 ATTCGTCGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1993579 original size:26 final size:26
Alignment explanation
Indices: 1993543--1993595 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1993533 GTTGACTTAG
*
1993543 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1993569 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1993595 G
1 G
1993596 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1994055 original size:900 final size:896
Alignment explanation
Indices: 1991882--1996338 Score: 5821
Period size: 900 Copynumber: 5.0 Consensus size: 896
1991872 TAAGATTCGT
* * ** * * * * *
1991882 CGGGGCACCATCATCGGAGCATCACCAGATAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
1 CGGGGCACCATCGTCAGAGCATCGTCGGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATCGG
1991947 GGGGCCGG-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
66 GGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
1992011 CCCTATCCCTCTTCAAACCTCG-AGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTATAGGT
131 CCCTATCCCTCATCAAACCT-GAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1992075 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCGCAAAATCT
195 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCT
* * *
1992140 TGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
259 TGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTA
** * ** *
1992205 CCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAGCCGCAAAAAGTTTCA
324 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTCA
*
1992270 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
389 AAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1992335 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * **
1992400 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTTTCTCTGGC--C--G-G-CG-TAG-
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACTAGTGCCGCCCGC
1992457 CGCCCGCC-CGCC--CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-CGCAGTCTA
584 CGCCCGCCGC-CCTTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCG-AGTCTA
* * * * *
1992518 AAATCAGATCGGACCGGTAGCAGGAT-AGGCAGCACGTC-GAGGGGGACCCGACCGATCCCCGGC
647 AGATCAGACCGGACCAGCAGCAGGATCA-GCAGCACG-CAGAGGGGGACCCGGCCGATCCCCGGC
* * * * * * *
1992581 TTGTGCATCCCGACCCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGTCTTAGGCA
710 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
1992646 TACAGAGTTCATTCCCAGTCTAA-CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
775 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
* * *
1992710 GGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACT-TTTTTCTTCAC
840 GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA-TATTTTTCTTCAC
* * * * * * * * * * *
1992767 CGGGG-ACCATTGACGGAGCATCATCAGAGAACCTGACCGACGGTATTGGGGTTCTGACGATCGG
1 CGGGGCACCATCGTCAGAGCATCGTCGGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATCGG
* *
1992831 GGAGGCC--AGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTTGC
66 GG-GGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
1992894 ACCCTATCCCTTATCAAACCTCG-AGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGG
130 CCCCTATCCCTCATCAAACCT-GAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
1992958 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
194 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
1993023 TGTACACTTCGTGTTTTTAGCTGAAATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCT
259 TGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCT
** * * *
1993088 ACCAAAATTGGGGCCAAAATTCCTTCCAAAAAAACTTTAAAAAATCCCGAAACGTAAAAAGTTTC
323 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTC
* *
1993153 ACAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGAC
388 AAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
1993218 CGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
453 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
1993283 CCCACCTAGCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCAGACATAGTGCCCGC
518 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GAC-TAGTG-CCGC
1993348 CCGTCCGCCCGCCTGCCCTTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGA
580 CCG-CCGCCCGCC-GCCCTT-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGA
* * *
1993413 GTCTAAGATCAGGCCGGACCAGCAACAGGATCAGCAGCACGCAGCGGGGGACCCGGCCGATCCCC
642 GTCTAAGATCAGACCGGACCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCC
* * * * *
1993478 GGCTTGCGTATCCTGCCCCTCTGGCCGGTTGAGCGCCCGTATGCTTGTTTCGTGGGTTGACTTAG
707 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1993543 GCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAAT
772 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT
* * * * *
1993608 CGAGGGTTACGGCAGGACATGCTGGGCTCGAGCATATGCTGGTGTCGTATTTTTCTTCAC
837 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCAC
* * * *
1993668 CGGGGCATCATCGTTAGAGCATCG-CTGGAGAACATGACCGGCAGCATTGGTGTTCCGGCAATCG
1 CGGGGCACCATCGTCAGAGCATCGTC-GGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATCG
* ** *
1993732 GGAGGGCCGGAGGGGGTATGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
65 GG-GGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
1993797 CCCCCTATCCCTCATCAAACCTGAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGG
129 CCCCCTATCCCTCATCAAACCTGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
1993862 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
194 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
** * *
1993927 TGTACACTTTTAGTTTTGAG-TGAATTTTTTGTGCAAGCCAA-AAAAATACAGGGATCACGTCTA
259 TGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTA
*
1993990 CCAAG-TTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCTGAAACTTAAAAAGTTTCA
324 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTCA
* * ** * *
1994054 CAAATAGTGAAAAATAGAAAATGAGTTGTCTTGCCAAGAAACTTCACGTGAAGCCTTAAGGGACC
389 AAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1994119 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
1994184 CCACCTACCACCCTATCGATTCACGGCTTGCGTATCCCGTCTCTCTAGCCGACGTAGTGCCCGCC
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCGAC-TAGTG-CCGCC
* * *
1994249 CGTTCGCCCGCCTGCCCTTCTGGTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCGAG
581 CG-CCGCCCGCC-GCCCTTC-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGAG
* * * * *
1994314 TCTAAGATCGGGCCGGACCAGCAACAGGATCAGTAGCATGCAGAGGGGGACCCGGCCGATCCCCG
643 TCTAAGATCAGACCGGACCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCG
* * *
1994379 GCTTGCGTATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
708 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
1994444 CATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC
773 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC
* *
1994509 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCAC
838 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCAC
* * * *
1994568 CGGGGCATCATCGTC-GAAGCATCGTTGGAGAACATGACCGGCAGCATTGGTGTTCCGGCAATCG
1 CGGGGCACCATCGTCAG-AGCATCGTCGGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATC-
* * * * *
1994632 GGGGGGCCGGAGGGGGTATGCGCACATGATGTGCAATGGGTGCTGGTATTTGGCCTTTATATTGG
64 GGGGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
1994697 CCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGG
129 CCCCCTATCCCTCATCAAACCTGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
1994762 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCT
194 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** * * *
1994827 TGTACACTTTGAGTTTGAAGATGAATTTTTTTGTGCAAGCCAAAAAAAATACATGGATCACGTCT
259 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCT
* * * *
1994892 ACCAAGTTTGGGGCCAAATCTCTTTCTGAAAAAA-TTTAGAAAAATCC-GAATCGT-AAAAGTTT
323 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTA-AAAAATCCTGAAACGTAAAAAGTTT
** * * * * *
1994954 TGAAAATCGTTAAAACTAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
387 CAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
1995019 CCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGCAGAAATGTGAAGATGTGCCTAA
452 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * * *
1995084 AGCCACCTACCAACCTATCGATACACGGCTTGCGCGTCCCATCTCTCTGGCTGACATAATG-C-C
517 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GAC-TAGTGCCGC
* * * *
1995147 CC-CCGCCCGCC-CGCC-T-GCTCGTTTCGTCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGT
580 CCGCCGCCCGCCGC-CCTTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGAGT
* * ** * **
1995208 CTAAGATTAGACCAGACCGAGGGTTGGGGCAGCAGGATTGGCAGCACGCAGAGGGGAACCCGATC
644 CTAAGATCAGACCGGACC-A--------GCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCC
* * * * *
1995273 GATCCCTGGCTTGCGCATCTTGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTT
700 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
1995338 GACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGG
765 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
1995403 ACC-GACCGAGGGTTGCGGTAACACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTT
830 ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCATATTTTTCTT
* *
1995466 GAT
894 CAC
* *
1995469 C-AGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACC-GCGGCATTGGTGTT-CGGCGATCGG
1 CGGGGCACCATCGTCAGAGCATCGTCGGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATCGG
*
1995531 GGGGCCGG-GGGGGATGTGTGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATT-GC
66 GGGGCCGGAGGGGG-TGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
1995594 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGT
130 CCCCTATCCCTCATCAAACCTGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1995659 ATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTT
195 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
1995724 GTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
260 GTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTA
* * * *
1995789 CCAAGTTTAGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTT
324 CCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCT-GAAACGTAAAAAGTTT
* * * *
1995853 CAAAAATCA-TGAAAAATAGAAAACGAGTTGA-CTTGCCATAAAACTTCACGTGCAGGCTAAAGG
387 CAAAAAT-AGTGAAAAATAGAAAACGAG-TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * ***
1995916 GACCATTGTATGAATTTACAGGCCAAAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
450 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
*
1995981 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG--TCTCT-----CT-G-GCCG-
515 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACTAGTGCCGC
* *
1996036 -C-CCG--C-CCG---TT--CT--TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGT
580 CCGCCGCCCGCCGCCCTTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-CCGAGT
* * * * *
1996089 CTAAGATGA-ACCGATTGAGGGTTTGCGGTAGCAGGATC-G--GTACGCAGA-GGGGACCCGGCC
644 CTAAGATCAGACCG---GA------CCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCC
* * * *
1996149 GAT-CCCAGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCG-CCGCACACTCGTTTCGTGGGTT
700 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
1996212 GACTTAGGCATACGGAGTTCATT-CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
765 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
*
1996276 ACCGGATCGA-GGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCGTATTTTTCTT
830 ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCATATTTTTCTT
1996339 TGTCGGCACC
Statistics
Matches: 3187, Mismatches: 307, Indels: 168
0.87 0.08 0.05
Matches are distributed among these distances:
873 91 0.03
874 46 0.01
875 32 0.01
876 12 0.00
877 8 0.00
879 1 0.00
880 44 0.01
881 13 0.00
882 2 0.00
883 47 0.01
884 469 0.15
885 11 0.00
886 1 0.00
887 1 0.00
888 5 0.00
889 2 0.00
890 2 0.00
891 2 0.00
893 55 0.02
894 2 0.00
895 4 0.00
896 205 0.06
897 93 0.03
898 17 0.01
899 172 0.05
900 996 0.31
901 186 0.06
902 408 0.13
903 39 0.01
904 221 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CGGGGCACCATCGTCAGAGCATCGTCGGAGAACATGACCGGCGGCATTGGTGTTCCGGCGATCGG
GGGGCCGGAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTTTAAAAAATCCTGAAACGTAAAAAGTTTCAAA
AATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACTAGTGCCGCCCGCCG
CCCGCCGCCCTTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGAT
CAGACCGGACCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG
CGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCAC
Found at i:1994479 original size:26 final size:26
Alignment explanation
Indices: 1994443--1994495 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1994433 GTTGACTTAG
1994443 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
1994469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
1994495 G
1 G
1994496 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:1995381 original size:26 final size:26
Alignment explanation
Indices: 1995345--1995396 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1995335 GTTGACTTAG
1995345 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
1995371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
1995397 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:1996253 original size:25 final size:26
Alignment explanation
Indices: 1996219--1996270 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1996209 GTTGACTTAG
1996219 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1996244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1996270 G
1 G
1996271 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1999649 original size:899 final size:896
Alignment explanation
Indices: 1997905--1999761 Score: 2655
Period size: 899 Copynumber: 2.1 Consensus size: 896
1997895 TCCGCACGCT
* * *
1997905 CGCCTGCCCGCTCGTTTCGTCTGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
1997970 CCAGACCGAGGGTTATGGTAGCAGGATTGGCATCACGCAGAGGGGAACCCTGCCGATCCCCGACT
66 CCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGAAAAGGGGAACCCGGCCGATCCCCGACT
* * * * *
1998035 TGCGCATCCCGCCCTTTTGGCAGGCAGAGCGCCCGCATGCTCGTTTGGTGGGTTGACTTAGGCAT
131 TGCGCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * * **
1998100 ACGGAGATCATTCCTAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAG
196 ACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAG
** *
1998165 GGTTAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACCAT
261 GGTTAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGCGCACCAT
* * * *
1998230 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGTACTGGGGTTCCAGCGATCGGGGGGGTCGGGG
326 CGCCGGAGCATCGTCGGAGAACCTAACCGACGGCACTGGGGTTCCAGCGATCAGGGGGCTCGGGG
* * *
1998295 GGTGTGCGTACATGATGTGCAATGAGTGATTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
391 GGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
1998360 TGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAG
456 TGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAG
1998425 CCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGT
521 CCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
1998490 TTTTAGCTGAATTTGTTTGTGCACGCCAACAAAAATACAAAGATCACGTCTACCAAGTTAGGGCC
586 TTTTAGCTGAATTTGTTTGTGCACACCAAAAAAAATACAAAGATCACGTCTACCAAGTTAGGGCC
* * * * * **
1998555 AGAACTCCTTTCGAAAAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
651 AAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAA
*
1998620 TTCAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA
716 TACAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA
* *
1998685 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCT
781 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCT
* *
1998750 ATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
846 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
* *
1998801 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * **
1998866 CCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGAAAAGAGGG-ACCCGGTCGATCCTCGGG
66 CCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGAAAAG-GGGAACCCGGCCGATCCCCGAC
* **
1998930 TT-CTGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGC
130 TTGC-GCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGC
* * *
1998994 ATACAGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCG
194 ATACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCG
* * * *
1999059 AGGGTTGCAGTGTAGCACATGTTGGGCT-TGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GA
259 AGGGTT--A--GCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGCCAG-
* * * * * *
1999122 CGCACCATCGTCGGAGCATCGTCGGTGAACCTAACCGGCGGCATTGGGGTTCCGGTGATCAGGGG
318 CGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGCACTGGGGTTCCAGCGATCAGGGG
* * * * *
1999187 GCT-GGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTATTTGGGCCTTATATTGGTCCCCT
383 GCTCGGGGGGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCT
* *
1999251 CTCCCTCATGAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
448 ATCCCTCATGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
1999316 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATTGTCACAAAATCTTGTACA
513 ACCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACA
* * *
1999381 CTTCGAGTTTTTAGCTGAATTT-TTTGTGCACACCAAAAAAAAATACAAGGATCATGTCTACCAG
578 CTTCGAGTTTTTAGCTGAATTTGTTTGTGCACACC-AAAAAAAATACAAAGATCACGTCTACCAA
* **
1999445 GTTTGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAAT
642 GTTAGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAAT
* * * * *
1999510 CGTGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
707 CGTGAAAAATACAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
1999575 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
772 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
1999640 TACCACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTTTGGCAGGCGTAGTGCCCGCC
837 AACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
* * *
1999700 CACCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATC
1999762 GGATCGGATC
Statistics
Matches: 848, Mismatches: 104, Indels: 15
0.88 0.11 0.02
Matches are distributed among these distances:
895 1 0.00
896 221 0.26
897 3 0.00
898 12 0.01
899 512 0.60
900 99 0.12
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGAAAAGGGGAACCCGGCCGATCCCCGACT
TGCGCATCCCACCCCTCTGGCAGGCAGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
ACAGAGATCATTCCCAGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAG
GGTTAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGCGCACCAT
CGCCGGAGCATCGTCGGAGAACCTAACCGACGGCACTGGGGTTCCAGCGATCAGGGGGCTCGGGG
GGTGTGCGCACAAGATGTGCAATGAGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TGAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTGTTTGTGCACACCAAAAAAAATACAAAGATCACGTCTACCAAGTTAGGGCC
AAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAA
TACAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCC
Found at i:2001431 original size:26 final size:26
Alignment explanation
Indices: 2001384--2001460 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
2001374 TTAACTTAGG
*
2001384 CATACGGAGTGCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
* * *
2001410 CGTATGTAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
2001436 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2001461 GATCAGACCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:2004615 original size:896 final size:894
Alignment explanation
Indices: 2002662--2006779 Score: 5146
Period size: 896 Copynumber: 4.6 Consensus size: 894
2002652 TGAAATGGGG
* * * * *
2002662 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTACCAAAAAAAATACAAGGATCACGTCTACC
1 ACACTTCGA-TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
2002727 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTTGAATCGCAAAAAGTTTC-AA
65 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCGAA
* * *
2002791 ATATC-GTGAAAAATAGAAAACGAGTCATCTTGCTATGAAACTTCACGT-CAGGCTTAAGGGACC
130 A-ATCAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
2002854 ATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
194 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
2002919 CCACCTACCACCCTATCGATCCACGGCTT-CTGCATCCCG-CTCTCCTTGG-CGGCGTAGTGGCC
259 CCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCT-C-TGGCCGGCGTAGT---C
* * * * *
2002981 ACCCGCCCGTCCA-CTCGTTTCATCGGTTGGCATAGGCATACGGAGTTCATT-CCAGTCTAAGAT
318 GCCCGCCCGCCCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * *
2003044 CAGACC-GAACAGAGGGTTACAGTAGTAGGATCAGCAGCACATAGAGTGGGACCCGGTTGATCCC
383 CAGACCAG-ACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAG-AGGACCCGGCTGATCCC
* * *
2003108 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCGCCCGCACGCTCATTTCGTGGTTTGACTTA
446 CGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
* * * * * * *
2003173 GGCATACGGAGTTCATTTCCAGTCTAAGAATACAAAGTTCATTCCCAATCTAAGATTGGACCAGA
510 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* * * *
2003238 CCGAGGGTTGC-ATCAGCACATGTTGGGCTTGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGG
575 CCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * * **
2003302 CGCA-CA--GTC---G-----TCGGAGAACCTGACTGGCCGCATTGGGGTTCCGGCGATCGGGGG
639 GGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG
* ** *
2003356 GCCGGGGGGTGTGCACACAA-GATGTGTGATGACTGCTGGTACATGGCCCTTATATTGGCCCCCT
704 GCCGGGGGGTGTGCACA-AATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
2003420 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTCAGATTTTATAGGTTTGCT
768 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
2003485 GCCAGTAGCCGTTAAAGTGTCTGAAATGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGT
833 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
2003547 ACACTTCCAGTTTTTTGCTGAATTTTTTGTA--CATGCCAACAAAAATACAAGGATCATGTCTAC
1 ACACTTCGA-TTTTTAGCTGAATTTTTT-TATGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * ** *
2003610 CAAGTTTGGGCCCGAAACTCCTT-CGAAAAAATTT-TAAAAATCTCGAATTGCAAAAAGTTTCAA
64 CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCGA
* * *
2003673 AAATCA-TGAGAAAA-AAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGAAC
129 AAATCAGTGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
2003736 CATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAA
193 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
** * *
2003801 CCCACCTACCACTGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCTGCGTAGT-GCCCG
258 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCG
* *
2003865 CCCGCCCAGTTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
323 CCCGCCCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
2003930 CAGACCGAGGGTTACGGTAGCAAGATCGGCAGCACACAGAGAGGACCCGGCTAATCCACGGCTTG
388 CAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGAGGACCCGGCTGATCCCCGGCTTG
* *
2003995 CGCATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCCCGCTCATTTCGTGGGTTGACTTAGGCATAC
453 CGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * * *
2004060 GGGAGTTCATTCCCAGTCGAAGCATATAGAGTTCATTCCCAAATCTAAGATCGGATTGGATCGAG
517 -GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC-AGTCTAAGATCGGATCGGACCGAG
* * *
2004125 GGTTTGTGACAGCACCATGCT-GGCTCGGGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCA
580 GG-TTGCGACAGCA-CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
* * * *
2004188 CCATCGTCGGAGCATCATCGGAGAACCTGACCGGTTGGCGTTGGGGTTCCGGTGATTGGGGGGGC
643 CCATCGTCGGAGCATCATCGGAGAACCTGACCGG-CGGCATTGGGGTTCCGATGA-TCGGGGGGC
*
2004253 CGGGGGGGTGTGCACAAATGATGTGCGAATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTA
706 C-GGGGGGTGTGCACAAATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2004318 TCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTG
769 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2004382 CCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
834 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
2004443 ACACTT-GATTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAGAAGGATCACGTCTACCA
1 ACACTTCGATTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
2004507 AGTTTGGGG-CAAAAATCTTTTCGAAAAAATTTTAAAAAATC-CTGAACTGTAAAAAGTTTTGAA
66 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTC-GAACCGCAAAAAGTTTCGAA
*
2004570 AAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
130 AATCAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
2004634 TGGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACC
195 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
2004699 CACCTACAACCCTATCGATCCACGGCTTGCACATCCCGTCTCT-TGGGTCGACGTAGTGCCCACC
260 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGT---CGCC
* * * * *
2004763 CGCCCGTCCGTCCGCTGGTTTCGTCGGTTAGCTTAGGCATACGGCGTTCATTCCCAGTCTAAGAT
321 CGCCCG-CC--CAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * ** *
2004828 TGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGATTC-GATCGATCCC
383 CAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGA-GAGGACCCGGCT-GATCCC
* * * * * * * * *
2004892 TGGCTTGCACATGCCGCCCCTCTAGCCGGTTGAGCACTCGTACTCTCGTTTCGT-GG--G--TT-
446 CGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
*
2004951 GGCTTAC---G--CA-T---A--C---G-----A-AGTTCATTCCCAGTCTAAGATCGGATCGGA
510 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* * * * * ** *
2004996 CCGAGTGCTGCGGCAGCACATGCTGGGCTCAGGCTTGTGCTGGTGTTGCATTTTTCTTCACCGGG
575 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* ** * * **
2005061 TCACCATCACCGGACCATCGTCGGAGAACCTGACCGGCATCATTGGGGTTCCGATGATCGGGGGG
640 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGG
* * * *
2005126 CCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGG-CCCC-AG
705 CCGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-
* * * *
2005189 TCCCTCATCAAACCTCGAGAACTCAAACCCCTTTAAAGAGCATTTGAGATTTTATAAGTTTGCTG
769 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2005254 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
834 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** *
2005315 ACACTTCGCGTTTTTAGCTGAATTTTTTTATGCATGTAAAAAAAAAATACAAGGATCACGTCTAC
1 ACACTTCG-ATTTTTAGCTGAATTTTTTTATGCATG-CCAACAAAAATACAAGGATCACGTCTAC
* * * *
2005380 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTTG
64 CAAGTTTGGGGCCAAAAATCCTTCCG-AAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCG
*
2005445 AAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAA-GGAC
128 AAAATCAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
2005508 CATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTA-AAATATGAAGATGTGCCTAAA
193 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* *
2005572 CCCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGT-GCCCG
258 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCG
* ** * *
2005636 CCCGCCC-GCTCGTTTCGTCAATT-GCTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCAGAC
323 CCCGCCCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
2005699 CAGACCGAGGGTTACAGGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGGCTAATCCCCGGCT
388 CAGACCGAGGGTTAC-GGTAGCAGGATCGGCAGCACGCAGAGA-GGACCCGGCTGATCCCCGGCT
* * *
2005764 TGTGCATCCTGCCCCTTTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
451 TGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * *
2005829 ACGAAGTTCATTCCCAGTCGAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAG
515 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* *
2005894 GGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTCTTCGTCGGGGCAC
580 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCATCGGGGCAC
* * * **
2005959 CATCGTCGGAGAATCACCGGAGAACCTGACCGGCGGCGTTGGGGTTCCGGCGATCGGGGGGGCCA
644 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCC-
*
2006024 GCGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
707 G-GGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
2006089 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
771 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2006154 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGA
836 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
2006213 ACACTTCGAATTTTTAGTTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
1 ACACTTCG-ATTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
2006278 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATGTAAAAAAATCCCGAACCGCAAAAGGTTTCGAA
65 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCGAA
* *
2006343 AATC-CTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
130 AATCAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
2006407 TTATATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGAAGATGTGCCTAAACC
195 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* *
2006472 AACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
260 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCC
*
2006537 GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
322 GCCCG--C-CCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * * * * **
2006602 AGATCGGACCGAGTGTTGCGACAGTAGGATCGGCATCACGCAGAGGGGA-CCGGCCGATCATCGG
384 AGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGAGGACCCGGCTGATCCCCGG
* *
2006666 CTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCA
449 CTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
*
2006731 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGGTCTAA
514 TACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA-GTCTAA
2006780 TATGTGATGG
Statistics
Matches: 2796, Mismatches: 325, Indels: 206
0.84 0.10 0.06
Matches are distributed among these distances:
866 52 0.02
867 83 0.03
868 5 0.00
870 4 0.00
871 56 0.02
872 110 0.04
873 29 0.01
874 41 0.01
875 150 0.05
876 121 0.04
877 99 0.04
878 6 0.00
879 14 0.01
880 110 0.04
881 84 0.03
882 102 0.04
883 169 0.06
884 60 0.02
885 28 0.01
886 2 0.00
887 1 0.00
888 2 0.00
891 1 0.00
892 3 0.00
893 89 0.03
894 102 0.04
895 78 0.03
896 371 0.13
897 220 0.08
898 237 0.08
899 3 0.00
900 8 0.00
901 3 0.00
902 12 0.00
903 180 0.06
904 71 0.03
905 7 0.00
906 34 0.01
907 49 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
ACACTTCGATTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCGAAA
ATCAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCC
GCCCAGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGAGGACCCGGCTGATCCCCGGCTTGCGC
ATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC
GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGT
GCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:2006764 original size:26 final size:26
Alignment explanation
Indices: 2006728--2006779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2006718 GTTGACTTAG
2006728 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCAGGTCTAA
2006754 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
2006780 TATGTGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:2007458 original size:733 final size:733
Alignment explanation
Indices: 2006049--2007511 Score: 2220
Period size: 733 Copynumber: 2.0 Consensus size: 733
2006039 AATGATGTGC
2006049 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2006114 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
* *
2006179 GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGTTGAATATTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAATATTTTTAT
*
2006244 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-CAAAAAAA
* *
2006309 TGTAAAAAAATCCCGAACCGCAAAAGGTTTCGAAAATCCTGAAAAATAGAAAACGAGTCGTCCTG
260 TGTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCCTG
* ***
2006374 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCGT
325 CCATGAAACTTCACGTGAAGGCTTAAGGAACCATTATATGAATTTACAAGCCATAAAAATGAAAT
* *
2006439 TGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
390 TGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGC
* *
2006504 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
455 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCACG-TCGTTTCGTCGGTTGGCT
* * * * *
2006569 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGTGTTGCGACAGTAGGATCG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCG
* * * *
2006634 GCATCACGCAGAGGGGACCGGCCGATCATCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGC
583 GCAGCACGCAGAGAGGACCGGCCGATCATCGGCTTGCGCATCCACCCCTCTGGCCGGCTGAGCCC
* * * * *
2006699 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
648 CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAC
2006764 TTCATTC-CAGGTCTAATATGT
713 TTCATTCTC-GGTCTAATATGT
* * *
2006785 GATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCTTATCTCTCATCAAACCTCGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2006850 CCCCCTTACAA-AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
66 CCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* * *
2006914 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTA
130 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAATATTTTTA
* ****
2006978 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-TTGCAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCAAAAAAA
* * ** * ** *
2007042 TTTTAAAAAATCTTGAACCGCAAAAATTTTCAAAAATGTTGAAAAATAGAAAACGAGTCGTCTTG
260 TGTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCCTG
* * *
2007107 CCATTAAACTTCACGTGAAGTCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGAAAT
325 CCATGAAACTTCACGTGAAGGCTTAAGGAACCATTATATGAATTTACAAGCCATAAAAATGAAAT
* *
2007172 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
390 TGGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGC
* * *
2007237 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCG-CTCAC-TCGTTTCGTCGGTTGGCTTA
455 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCACGTCGTTTCGTCGGTTGGCTTA
* **
2007300 GGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGC
520 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGGC
* * * *
2007365 AGCATGGCAGAGAAGGACCCGGCTGATC-CCTGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAG
585 AGCA-CGCAGAG-AGGA-CCGGCCGATCATC-GGCTTGCGCAT-CCACCCCTCTGGCCGGCTGAG
2007429 CCCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
645 CCCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
2007494 AACTTCATTCTCGGTCTA
710 AACTTCATTCTCGGTCTA
2007512 TGATTGGATT
Statistics
Matches: 657, Mismatches: 63, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
729 80 0.12
730 6 0.01
731 7 0.01
732 19 0.03
733 307 0.47
734 1 0.00
735 62 0.09
736 173 0.26
737 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (733 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAATTTTTAGCTGAATATTTTTAT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCAAAAAAAT
GTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCCTGC
CATGAAACTTCACGTGAAGGCTTAAGGAACCATTATATGAATTTACAAGCCATAAAAATGAAATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCACGTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGGCA
GCACGCAGAGAGGACCGGCCGATCATCGGCTTGCGCATCCACCCCTCTGGCCGGCTGAGCCCCCG
CACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAACTTC
ATTCTCGGTCTAATATGT
Found at i:2009260 original size:26 final size:26
Alignment explanation
Indices: 2009224--2009276 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2009214 GTTGACTTAG
*
2009224 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2009250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2009276 G
1 G
2009277 ATAGACCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2009421 original size:26 final size:26
Alignment explanation
Indices: 2009385--2009437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2009375 GTTGACTTAG
2009385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2009411 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2009437 G
1 G
2009438 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2011125 original size:26 final size:26
Alignment explanation
Indices: 2011096--2011148 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2011086 GTTGACTTAG
* *
2011096 GCATACAGATTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2011122 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2011148 G
1 G
2011149 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2013776 original size:26 final size:28
Alignment explanation
Indices: 2013747--2013798 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
2013737 GACTCTAGGC
2013747 ATACGGAG-ATCA-TCCCAGTCTAAGCT
1 ATACGGAGTATCATTCCCAGTCTAAGCT
*
2013773 ATACGGAGTTTCATTCCCAGTCTAAG
1 ATACGGAGTATCATTCCCAGTCTAAG
2013799 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 8 0.35
27 3 0.13
28 12 0.52
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (28 bp):
ATACGGAGTATCATTCCCAGTCTAAGCT
Found at i:2015299 original size:891 final size:884
Alignment explanation
Indices: 2012883--2015788 Score: 3630
Period size: 891 Copynumber: 3.2 Consensus size: 884
2012873 GTTGACTTAG
* * *
2012883 GCATACGAAGTTCATTCCCAGTCTAAGAT-CAGA-TCGGACCGAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCA-ACT-GGACCGAGGGTTGCGGCAGCACATGTTG
* **
2012946 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG----A-CACC---GCATCGTCGGA
* * *
2013011 GAACCTGACTGACGGCATTGTGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
121 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
2013076 GCGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2013141 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2013206 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCT-AATTTTTTT
** *
2013270 GTGCATGCCAACAAAGTTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
379 GTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
2013335 ATTTTAAAAAAA-CCTGAACCGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
444 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
2013398 TGCATTGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
509 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
* *** * * * * *
2013463 ACTGGCACATAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCCATCCAAGGATTAC
574 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2013528 GCATCCCGTCTCTCTGGCTGGCATAGT--G--C-CCG-----CTCGTTTCGTCGGTTGGCTTAGG
639 GCAT-CCGTCTCTCTGGCCGACGTAGTCCGCCCGCCGCCCCCCTCGTTTCGTCGGTTGGCTTAGG
* * ** * *
2013583 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGGCAG
703 CATACGGAGTTCATTCCCA-TCTAAGATCA-AACCAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
2013648 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCACCCCTCTGGTCGACTGAGCGCC
766 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCC
* *
2013713 CGGCACGCTCGTTTTCATGGGTTTGACTCTAGGCATACGGAGATCA-TCCCAGTCTAA
831 C-GCACGCTCG-TTTCGTGGG-TTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAA
**
2013770 GCTATACGGAGTTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGGGCAGCACATGC
1 GC-ATACGGAG-TTCATTCCCAGTCTAAGATCCAACTGGACCGAGGGTTGC--GGCAGCACATG-
* * * * * ** *
2013835 TAGGCCTCTGGCATGTGCTAGCGCGC-TGTTTTTCCTTCGGTCGACGG-CACC-CATCGTCGGAG
61 TTGGGCTCGGGCATGTGCTGGTGC-CACATTTTT-CTTC-GTCG-GGGACACCGCATCGTCGGAG
*
2013897 AACCTAACCGGACGGCATTGGGGGTTCCGAACGATCGGGGGGGGCCGGGGGGGTGGTAGCGCACA
122 AACCTGACC-GACGGCATT-GGGGTTCCG-ACGATC-GGGGGGGCC-GGGGGGT-GT-GCGCACA
* * * *
2013962 TGATCGTACGATGGGTGCTCCGTACTTGGCCCTTATATTAGCCCCCTATCCTTCAACAAACCTCG
180 TGAT-GTGCGATGGGTGCT-GGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCG
*
2014027 AGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
243 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
2014092 GTCTGACATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTTGTACACTTCGAGTTTTAGCTA
308 GTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGATTTTTAGCTA
* * *
2014157 ATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCT----AGTTTTGGGCCAAAACTCTT
371 ATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
* ** *
2014217 TTTGAAAAAATTTT-AAAAAAT-CCGAACCCACAAAAAAGTTTTGAAAATTGTGAAAAATAGAAA
436 TCTG-AAAAATTTTAAAAAAATCCCGAA-CC-GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * *
2014280 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGAACATTTTATGAATTTACAAGCC
498 ACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCC
* *
2014345 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTGCCACCCTATCGAT
563 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
2014410 CCACGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCACGCCCTCTCACTCGTT
628 CCACGGCTTGCGCATC-CGTCTCTCTGGCCGACGTAGT--CCGCCCGC-CGCCC-C-C-CTCGTT
* * * * *
2014475 TCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCGATCTAAGATTGAACCCAACTGAGGGTTGC
686 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-ATCTAAGA-TCAAACCAACCGAGGGTTGC
* * * * * * * **
2014540 GGTAGTAGGATTGGCAACACGTAGAGGGGGACCTGACCGATCCCTGGCTTGTTCATCCCACCCCT
749 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCT
* * * * *
2014605 CTAGCCGACTGAGTGCCCGTACGCTCGTTTCGTCGGTTGACTTAGGCATACGGTGTTCATTCCCA
814 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
2014670 GTCTAA
879 GTCTAA
* * * * * * *
2014676 GCAAATGGAGTTCGTTCCCAGTCTAAGATCCAATTGGATCGAGGTTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACTGGACCGAGGGTTGCGGCAGCACATGTTGGG
2014741 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG-CA-C-CATCGTCGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGACACCGCATCGTCGGAGAACCTGACC
* * * * *
2014803 GGCGACATTGGGGTTTCGACGATCGGGGGGGCC-AGGGG-GTGCGCACATTATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
2014866 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTAT
196 CTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-T
*
2014930 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
2014995 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGTTAAATTTTTTTGTCCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCT-AATTTTTTTGTGCATGCC
** * *
2015060 AACAAAAATATGAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGACAAAATTTTAAA
388 AACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAAATTTTAAA
* *
2015125 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGA
452 AAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGA
* ** *
2015190 AACGTCACGTGAAGGCTTAAGGGACCATTGCATGAACTTACAAGCCATAAAAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
2015255 GCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-G
* *
2015320 TCTCTCTGGCCGACGTAGTACCTGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCA
646 TCTCTCTGGCCGACGTAGT-CC-GCCCG-CCG-CC-CCC-CTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
2015385 TACGGAGTTCATTCCCAATCTAAGATCAAACTAGACCGAGGGTTGCGGCAGGAAGATCGACAGCA
705 TACGGAGTTCATTCCC-ATCTAAGATCAAACCA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * *
2015450 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCTGGCTGAGCGCCCG
768 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCG
* * *
2015515 CACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
833 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
2015567 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACTGGACCGAGGGTTGCGGCAGCACATGTTGGG
*
2015632 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACTGGGGTATCATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGG-A-CA---CC---GCATCGTCGGAG
* * * *
2015696 AACCTGAGCGACGGCATTGGGGTTTC-AGTGATCGGGGGGGCCGGGGGGTGTGCGCATATGATGT
122 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
2015760 GCGATGGGTGCTGGTACTTGGCCCTTATA
186 GCGATGGGTGCTGGTACTTGGCCCTTATA
2015789 GGTTTGCTGC
Statistics
Matches: 1737, Mismatches: 201, Indels: 145
0.83 0.10 0.07
Matches are distributed among these distances:
884 13 0.01
885 53 0.03
886 142 0.08
887 42 0.02
888 23 0.01
889 47 0.03
890 49 0.03
891 504 0.29
892 52 0.03
893 202 0.12
894 149 0.09
895 58 0.03
896 20 0.01
897 21 0.01
898 5 0.00
899 5 0.00
900 6 0.00
901 27 0.02
902 58 0.03
903 4 0.00
904 74 0.04
905 21 0.01
906 19 0.01
907 7 0.00
908 8 0.00
909 125 0.07
910 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCAACTGGACCGAGGGTTGCGGCAGCACATGTTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGACACCGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTAGCTAATTTTTTTGTGCATGCCAAC
AAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTTAAAAAAA
TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
TCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCT
CTGGCCGACGTAGTCCGCCCGCCGCCCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCATCTAAGATCAAACCAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2015577 original size:26 final size:26
Alignment explanation
Indices: 2015541--2015593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2015531 GTTGACTTAG
* *
2015541 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2015567 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2015593 G
1 G
2015594 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2016779 original size:26 final size:26
Alignment explanation
Indices: 2016733--2016783 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2016723 TTGACCTAGG
* *
2016733 CATACGGAGCTCTTTCTCAGTCTAAT
1 CATACGGAGCTCATTCCCAGTCTAAT
*
2016759 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGCTCATTCCCAGTCTAA
2016784 GATTAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAT
Found at i:2017646 original size:26 final size:26
Alignment explanation
Indices: 2017617--2017669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2017607 GTTGACTTAG
* *
2017617 GCATACGTAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2017643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2017669 G
1 G
2017670 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2018202 original size:26 final size:26
Alignment explanation
Indices: 2018172--2018224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2018162 GTTGAGTTAC
*
2018172 GCATAC-AGAGTTCATTCCCAGTTTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
2018198 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2018224 G
1 G
2018225 ATTGGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2019986 original size:26 final size:26
Alignment explanation
Indices: 2019957--2020009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2019947 GTTGACTTAG
2019957 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2019983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2020009 G
1 G
2020010 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2020894 original size:26 final size:26
Alignment explanation
Indices: 2020865--2020917 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2020855 GTTGACTTAG
2020865 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2020891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2020917 G
1 G
2020918 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2021805 original size:26 final size:26
Alignment explanation
Indices: 2021769--2021820 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2021759 GTTGACTTAG
2021769 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
2021795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2021821 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:2021879 original size:904 final size:902
Alignment explanation
Indices: 2017984--2030902 Score: 17214
Period size: 891 Copynumber: 14.4 Consensus size: 902
2017974 CCGCCGCCCA
* ** * ** *
2017984 CCGCCCGCTTGTTTCGTCGGTTGGCAGAGGCATACGGCGTTCATTCCCAGTCTAAGATTGGACCG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * * * *
2018049 GACCGAGGGTTACAACAG-TGGAATCGACAGCACGCAGAGGGAGACCCGATCGATCCCCGGCTTG
66 GACCGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
2018113 CGCATCCAGCCCCTTTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGCGTTGAGTTACGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * * *
2018178 AGAGTTCATTCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGAGCAGATCGAAGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * **
2018243 TTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCAT
260 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
** * * * *
2018308 CACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
325 CGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
*
2018373 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
390 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
2018438 TTCAAACCTCGAGAACTCACACCCCCTTAAGGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
455 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
2018503 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGA
520 GCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
2018568 GTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC-ACCAAGTTTGGG
584 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
2018631 GCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAGCCGCAAAAAGTTTCAAAAATCGTGAA
649 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAA
*
2018696 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
713 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
2018761 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
778 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
2018826 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-----CGCCCGC
843 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* ** * *
2018879 CCGCCCACTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGATCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
2018944 GA-C--------CGGCAGCAGGATAGGCAGCATGTAGAGGGGGA-CCGGCCGATCCCCGGCTTAC
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * ** * *
2018999 GCATCCCGACCCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTAATGGGTTGTCTTAGGCATACA
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
2019064 GAGTTCATTCCCAGTCTAA-CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * * *
2019128 TACGGCAGCAGATGCTAGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCGGGG-ACCATT
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * ** *
2019192 GACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGAGGCC-ATGT
326 GTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * * * *
2019256 GGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTTGCACCCTATCCCTCA
391 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
2019321 TCAAACCTCGAGAACTCAGACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAG
456 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
2019386 CAATTCAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
521 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * **
2019451 TTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAAATTGGGGC
586 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * ** * * *
2019516 CGAAACTCTTTCCGAAAAAACTTTAAAAAATCCTGAAACATAAAAAGTTTCACAAATAGTGAAAA
651 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGAAAAAGTTTTAAAAATCGTGAAAA
*
2019581 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTT
715 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
2019646 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
780 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
2019711 TATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCTCGTCTGCCCGT
845 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-C-C--C-GCCCGC
* * *
2019774 CTGCCTTTCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG
1 CCGCC---C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
2019839 GCCGGACC-A--------GCAACAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGAC
62 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
2019895 TTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGCT-AGTTGACTTAGGC
127 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGC
* *
2019959 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
191 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * **
2020024 AGGATTACGGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGC
256 AGGGTTGCGG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * * *
2020089 ATCATCGTCGAAGCATCGCTGGAGAACATGACAGACAGCATTTGGTGTTCCGACAATCGGGGGGG
320 ACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCA-TTGGGGTTCCGACGATCGGGGGGG
*
2020154 CCGGAGGGGGTATGCGCACATGATGTGCGAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
384 CCGG-GGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2020219 TATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAATGAGCATTTGAGATTTTACAGGTTTGC
447 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
2020283 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
512 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
2020348 ACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCA
577 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCA
** * * ** * *
2020413 AAATTGGGGCCAAAACTCCTTCCGAAAAAAACTTTAAAAAATCCTGAAACTTAAAAAGTTTCACA
641 AGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCG-AACCGAAAAAGTTTTAAA
* * *
2020478 AATAGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCAT
704 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
2020543 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
769 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
2020608 ACCTACCACCCTATCGATTCATGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCTCG
834 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-C-C-
*
2020673 TCTGCCCGT
896 -C-GCCCGC
* ** *
2020682 CTGCCTTTCTGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG
1 CCGCC---C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * ** *
2020747 GCCGGACC-A--------GCAACAGGATCAGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGAC
62 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
2020803 TTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGCT-AGTTGACTTAGGC
127 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGC
* *
2020867 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
191 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * **
2020932 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCA
256 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* ** * ** * *
2020997 TCATCGTCAAAGCATCGCTGGAGAACATGACCGGTAGCATTGGTGTTCCGACAATCGGGGGGGCC
321 CCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
*
2021062 GGAGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
386 GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2021127 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGC
450 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
2021192 CAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACT
515 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** * * * *
2021257 TTGAGTTTGAAGATGAATTTTTTTGTGCAAGCCAAAAAAAATACATGGATCACGTCTACCAAGTT
580 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
2021322 TGGGGCCAAATCTCTTTCTGAAAAAA-TTTAGAAAAATCCCGAATCGTAAAAGTTTTGAAAATCG
645 TGGGGCCAAAACTCCTTCCGAAAAAATTTTA-AAAAATCCCGAACCGAAAAAGTTTTAAAAATCG
* * *
2021386 TTAAAACTAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
709 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
2021451 GAATTTACAAGCCATAAAAATAGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAAGCCACCTA
774 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
2021516 CCAACCTATCGATACACGGCTTGCGCGTCCCATCTCTCTGGCTGACATAATGCCCCCCCGCCCGC
839 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCCCCGCCCGC
* * * *
2021581 CCGCCTGCTCGTTTCGTCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
2021646 GACCGAGGGTTGGGGCAGCAGGATTGGCAGCACGCAGAGGGGAACCCGATCGATCCCTGGCTTGC
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * * *
2021711 GCATCTTGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACG
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
2021776 GAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
2021841 TGCGGTAACACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTT-GATCAGGGCACCAT
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCAT
* * ** *
2021905 CGTCAGAGCATCG-TCGGAGAACCTGACCGACGGCATTGGTATT-CGGCGATCGGGGGGGCCGGG
325 CGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
2021968 GGGGATGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCC
389 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2022032 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTATGCTGCCAG
453 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
2022097 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCG
518 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
2022162 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAG
583 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-G
* * * * *
2022227 GGGCCAAAATTCCTGCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTG
647 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTG
* * * * *
2022292 AAAAATAGAAAACGAGTTGACTTGCCATAAAACTTCACGTGCAGGCTAAAGGGACCATTGTATGA
711 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
2022357 ATTTACAGGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
776 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
2022422 ACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGC
841 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGC
* *
2022485 CCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC
* * * * * *
2022549 GGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTG
65 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
*
2022614 CGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
2022678 GGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
**
2022743 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA-
260 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * *
2022807 --TC---G--T--C-GGAGAACCTGACCGACGACATTGGGGATCCGACGATCGGGGGGGCCGGTG
325 CGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
*
2022862 GGGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
390 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
2022927 ATCAAACCTAGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
455 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
2022992 GCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
520 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
2023057 TTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGG
585 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** * * *
2023121 CCAAAACTCCTTCCGGAAAAATTTTAAAAAATCTTGAACGGCAAAAAGTTTCAAAAATCATGAAA
650 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAAA
2023186 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
714 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
2023251 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACC
779 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
2023316 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGC
844 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGC
* * * * * *
2023376 CCGCCCGTTCTTTTCGTTGGTTGGGTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
2023441 GACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGA-CGATCCCCGACTTG
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTG
* * * * * * * *
2023505 TGCATCCCGCCCGTCTGGCCAGTTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTAGGCATAT
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
2023570 GGAGTTCATTCCTAGTCTAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * **
2023635 TTGCGGCAGCACATGCTGGGCTCGGGCTTATGCTGGTGCCATATTTTTCTTCGTCGGGGCACCA-
260 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* *
2023699 --TC---G--T--C-GGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGG
325 CGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG
* * * *
2023754 GAGGTGTACGCACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCT
389 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
2023819 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
454 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
2023884 AGCCATTAAAGTGTGTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGA
519 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
2023949 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGG
584 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
2024014 GCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGGA
649 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAA
* * * *
2024078 AAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTTAAT
713 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
2024143 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
778 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
2024208 CCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAG---CCCGCCCGC
843 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* *
2024265 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * *
2024330 AACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
2024395 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACG
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
2024460 GAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGTATAAAATCGGATCGGACTGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
2024525 GGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCACC
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * *
2024590 GTCGGAGCAACGCAGGAGAACCTGACTGGCGGCATTGAGGTTCTGACGATC-GGAGGGCC-GGGG
326 GTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* *
2024653 GGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTGA
391 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * * *
2024718 TCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTCATATTTTATAGGTTTGCTACCAGTAG
456 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
2024783 CCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
521 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * **
2024848 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGACTGGGGC
586 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
2024913 CAAAACTCCTTTC-AAGAAAATTTTAAAAAATCCCGAACC-ACAAAA---ACAAAATTCGTG-AA
651 CAAAACTCCTTCCGAA-AAAATTTTAAAAAATCCCGAACCGA-AAAAGTTTTAAAAATCGTGAAA
* *
2024972 AA-A-AAAATGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATT
714 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** *
2025035 TACAAGCTGTAAAAATGGCATTGGC-T-CATAGAAATATGAAGATGTGCCTAAACCCACCAACCA
779 TACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
2025098 CCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTA--G-CGCTCGCCCGC
842 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* * ** * *
2025156 CCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCTAGTCTAAGATCAGATC-
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * * * * *
2025220 GAACCAAGCGTCGCGACAGCAAGATTGGCAGCACACAGATGGGGACCCTG-TCGATCTCCGGTTT
66 G-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTT
* ** * * *
2025284 GTGCATCCCGATCCTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAAA
129 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
2025349 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * * *
2025414 GTTGCAGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCTGCATTTTTCTTC-ACTGAGGCACC
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* * * * *
2025478 ATCG-CTGGAGCATCG-TCGGGGAACCTGATCGACGGCATCGGGGTTCCGGCGATCGGGGGGGCC
323 ATCGTC-GGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
2025541 GAGGGGGTGTGCGCGCATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
386 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
2025606 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
451 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2025671 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
516 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
2025736 CGAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
581 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * * * * *
2025801 GGGGCAAAAAAGCCTTCCGAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTGAAAAATCAT
646 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GAAAAAGTTTTAAAAATCGT
2025866 GAAAAA-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
710 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
2025930 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
775 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
2025995 CATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGTCGGCGTAGT-------GCCCAC
840 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* * * *
2026051 CCGCCCGCTCGTTTTGTCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCAGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * **
2026116 GACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCC-AGCCGATTCCTAGCTTG
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTG
* * ** * *
2026180 TGCATCCCACCCCTCAAGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
130 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
2026245 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------
* * * *
2026310 AGTCTAAGATCGGACCTGACCGAGGGTTACGACAACACATGCTAGGCTCGGGCATGTGCTGGTGC
247 A--C------C-G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
2026375 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ATCGGAGAACCTAACCGGTGACATTA
299 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTG
* * * *
2026439 GCGTTTCGGCGATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
363 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
2026503 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAACGAGCATT
428 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
2026568 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCGAA
493 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
2026633 TGGCCACAATATCTTGTACACTTCGAGTTTTTCA-CTGAATTTTTTTATGCATGTCAAAAAAAAT
558 TGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
2026697 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGA
622 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * **
2026762 ACCCAAAAAGTTTCAAAAATTTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
687 ACCGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
2026827 AAGCCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGTCATGCAGAAATATG
752 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * *
2026892 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACTGCTTGCGCATCCCATCACTCTGGCC
817 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * **
2026957 GGCATAGTGCCCGCCCGCCCAT
882 GACGTAGTGCCC-CCCGCCCGC
* * * ** * * *
2026979 CTGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTGCAGTCCAAGATCGGATCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * *
2027044 GATCGAGGGTTGCGGTAGCAGGATTGGCAGCACACAAAGTGGGACCCGACTGATCCCGGGCTTGC
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
2027109 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
2027174 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
2027239 TGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* **** ** * *
2027304 GCCGGAGCATCGCCATTGAACCTGACCGGCAACTTTGGGGTTCCGGCGATCGGGGGGGCC-GGGG
326 GTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
2027368 GGTGTTCGCACATGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
391 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
2027433 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG
456 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
2027498 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
521 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
2027563 TTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGC
586 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
2027628 CAAAAATCCTTCCGAACAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAA
651 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAAAA
*
2027693 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
715 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
2027758 ACAAGCCACAAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
780 ACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
2027823 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTGCCCGACGTAGTG---CCCGCCCGC
844 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* **
2027879 CCG-CCGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * ** * ** * *
2027943 GACTGAGCGTTACAGCAGCAGGATCGAAAACACGCAGAGGGGGACCCGGTCGATGCCTGGCTTGC
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
2028008 GCATCCTGCCCCTCTGGTCGACTGAGCGCCCGAACGCTTGTTTCGTGGGTTGACTTAGGCATACG
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
2028073 GAGTTCATT-CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * *
2028137 TGTGACAACACATGCTGGGCTCAGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* *
2028202 GCCGGAGCATCG-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG
326 GTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
2028265 GTGTGCGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTC
390 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
2028330 ATCAAACCTCCAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
455 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
2028395 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
520 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
2028460 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGG
585 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
2028525 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTCAAAATCATGAAA
650 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCGTGAAA
* *
2028590 AATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTT
714 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
2028655 TACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACGCACCTACCACC
779 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
2028720 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAAT-------GCCCGC
844 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
* * * **
2028772 CCGCCCGCTCATTTCGTCGGTTGGCTGAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** ** * * * *
2028837 GACTGAGGGTTATGATAGCAAGATCGACAGCATGCAGAGGGGGAACC-AGCCGATCCCCGGCTTG
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTG
** * *
2028901 CGCATCCCGCCCCTAC-GGCTTGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATA
130 CGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
2028965 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * ** **
2029030 GTTGTGGTAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCA
259 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* *
2029095 TCGTCGGAGCTTCG-TCGGAGATCCTGACCGGCGGCATTGGGGTTCC-AGCGATC-GGGGGGCCG
324 TCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-
* * *
2029157 GGGGGGCTGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
386 GGGGGG--GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2029222 TCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
449 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2029287 CCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
514 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
2029352 TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
579 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
2029416 TTGGGGCCAAGACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGCAGAAAGTTTCAAAAATC
644 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATC
* *
2029481 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
708 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
2029546 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
773 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
2029611 ACCACCTTATCGATCCACGACTTGCACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCTCGCCCG
838 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCG
2029676 C
902 C
*
2029677 CCGCCCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 CCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * * * *
2029742 ACCAGACTGAGGGTTGCGATAGCAGGATTGGCAGCACGCAGAGGGAGACCCGAGTCGATCCTCGA
62 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGG
* * * * * *
2029807 CTTACGTATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAGGC
126 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
2029872 ATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
191 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** * * * *
2029937 AGGGTTACGGCAGCACATGCTATGCCCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGCA
256 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * *
2030002 CCA---TC---G--T--C-GGAGAACTTGACTGGCGG-ATTGGGGTTCCGATGATC-GGGGGGCC
321 CCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
2030054 GGCGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTAT
386 GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2030119 CCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
450 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
2030184 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTCGTACACT
515 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
2030249 TCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTT
580 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
2030313 TGGGGCCAAAACTTCTTCCGAAAAAATTCTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCG
645 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAGTTTTAAAAATCG
2030378 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
709 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
2030443 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
774 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * **
2030508 TCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCCCACCCGCCTAC
839 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGC
* * * * * * *
2030573 CCGCCCACTCATTTTGTCGATTGGCTTTGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCA
1 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * ** * *
2030638 GACCAAGGGTTGCGACAGCATGATCGGTAGCACTTAGAGGGGGACCCGACCGATCCCTGGCTTGT
66 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * * * *
2030703 GCATCCCACCCCTCTGGTCGGCTGAGTGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACA
131 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
2030768 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-TC--A---GACCGAGGGT
196 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
2030827 TACGACAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
261 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
2030892 GTCGGAGCATC
326 GTCGGAGCATC
2030903 ACCGAAGAAC
Statistics
Matches: 10728, Mismatches: 1110, Indels: 373
0.88 0.09 0.03
Matches are distributed among these distances:
881 45 0.00
882 182 0.02
883 292 0.03
884 93 0.01
885 159 0.01
886 21 0.00
887 2 0.00
888 5 0.00
889 290 0.03
890 5 0.00
891 942 0.09
892 432 0.04
893 866 0.08
894 258 0.02
895 504 0.05
896 477 0.04
897 650 0.06
898 770 0.07
899 431 0.04
900 132 0.01
901 50 0.00
902 631 0.06
903 586 0.05
904 685 0.06
905 116 0.01
906 338 0.03
907 199 0.02
908 498 0.05
909 93 0.01
910 181 0.02
913 1 0.00
915 1 0.00
917 1 0.00
919 23 0.00
920 449 0.04
921 101 0.01
922 2 0.00
924 1 0.00
926 1 0.00
927 2 0.00
928 212 0.02
929 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
GTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAGTTTTAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCGC
Found at i:2022708 original size:26 final size:26
Alignment explanation
Indices: 2022672--2022724 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2022662 GTTGACTTAG
2022672 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2022698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2022724 G
1 G
2022725 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2026275 original size:26 final size:26
Alignment explanation
Indices: 2026239--2026317 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2026229 GTTGACTTAG
*
2026239 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2026265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2026291 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2026317 G
1 G
2026318 ATCGGACCTG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2027203 original size:26 final size:26
Alignment explanation
Indices: 2027167--2027219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2027157 GTTGACTTAG
2027167 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2027193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2027219 G
1 G
2027220 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2028100 original size:25 final size:26
Alignment explanation
Indices: 2028066--2028117 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
2028056 GTTGACTTAG
*
2028066 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2028091 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2028117 G
1 G
2028118 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2028997 original size:26 final size:26
Alignment explanation
Indices: 2028960--2029012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2028950 GTTGACTTAG
*
2028960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2028986 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2029012 G
1 G
2029013 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2029900 original size:26 final size:26
Alignment explanation
Indices: 2029870--2029922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2029860 GTTGACTTAG
*
2029870 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2029896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2029922 G
1 G
2029923 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2030797 original size:26 final size:26
Alignment explanation
Indices: 2030761--2030813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2030751 GTTGACTTAG
2030761 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2030787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2030813 G
1 G
2030814 TCAGACCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2031602 original size:58 final size:56
Alignment explanation
Indices: 2031406--2031620 Score: 228
Period size: 58 Copynumber: 3.7 Consensus size: 56
2031396 GGTAAGGGAC
2031406 AATTGATACCTTTC-ACTTTTT-CCAAAAAGCTATGCTTTTTTTGAAAAGTTTACTTTTAAGG-A
1 AATTGATA-CTTTCAACTTTTTCCCAAAAA--TAT--TTTTTTT--AAA-TTTA-TTTTAAGGAA
*
2031468 AATTGATACTTTCAACTTTTTTCCC-AAAATATTTTTTTTAAATATATTTTAA-GAA
1 AATTGATACTTTCAAC-TTTTTCCCAAAAATATTTTTTTTAAATTTATTTTAAGGAA
*
2031523 AA-TGATACGTTCAACTTTTTTCCTCAAAAATATTTTTTTTAAACTTTATTTTTAAGGAA
1 AATTGATACTTTCAAC-TTTTTCC-CAAAAATATTTTTTTTAAA-TTTA-TTTTAAGGAA
2031582 AATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTT
1 AATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTT
2031621 GGAAATTTTG
Statistics
Matches: 138, Mismatches: 4, Indels: 26
0.82 0.02 0.15
Matches are distributed among these distances:
54 21 0.15
55 10 0.07
56 20 0.14
57 7 0.05
58 27 0.20
59 12 0.09
60 12 0.09
61 8 0.06
62 10 0.07
63 9 0.07
64 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (56 bp):
AATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTAAATTTATTTTAAGGAA
Found at i:2034417 original size:26 final size:26
Alignment explanation
Indices: 2034387--2034439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2034377 GTTGACTTAG
2034387 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2034413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2034439 G
1 G
2034440 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2035514 original size:893 final size:890
Alignment explanation
Indices: 2032654--2037769 Score: 6422
Period size: 892 Copynumber: 5.7 Consensus size: 890
2032644 NTCGGACTGA
* * * * * * *
2032654 ATCGAGGGTTACGGCAGGACATGCTGGGCTCGAGCATATGCTGGTGTCGTATTTTTCTTCACCGG
1 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * * * * *
2032719 GGCATCATCGTTAGAGCATCGCTGGAGAACATGACCGGCAGCATTGGTGTTCCGGCAATCGGGAG
66 GGCACCATC------G--T--C-GGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATCGGGGG
* * *
2032784 GGCCGGAGGGGGTATGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
120 GGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
2032849 CTATCCCTCATCAAACCT-GAAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTT
183 CTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
2032913 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
247 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** ** * * * * *
2032978 ACACTTTTAGTTTGAAGATGAATTTTTTTGTGCAAGCCAAAAAAAATACAGGGATCACGTCTACC
312 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** * **
2033043 AAGTTTGGGGCCAAATCTCCTTCTGAAAAAA-TTTAGAAAAATCCCAAACCG-TAAAAGTTTTGA
377 AAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA-AAAAATCCTGAACCGCAAAAAGTTTCAA
* * *
2033106 AAATCGTTAAAACTAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
441 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
2033171 TTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAAGC
506 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
2033236 CACCTACCAACCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGACATAATGCCC-CCT
571 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-
*
2033300 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
635 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
2033365 CAGACCAGACTGAGGGTTGGGGCAGCAGGATCAACACCACGCAGAGGGGAACCCGATCGATCCCC
700 CAGACCGGACTGA-GGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
* ** * * * *
2033430 GGCTTGTGCATCTTGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATAGGTTGACTTAG
764 GGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
2033495 GCATACGGAATTCATTCCCAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAAATCGGATCGG
828 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * *
2033558 ATCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCAG
1 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-G
* * *
2033623 GGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT-CGGCGATCGGGGG
65 GG-------G-C--ACCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATCGGGGG
*
2033687 GGCCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT-GCCCC
120 GGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
2033751 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTATG
183 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2033816 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTCTA
248 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
2033881 CACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
313 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
2033946 AGTTTAGGGGCCAAAATTCCTGCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAA
378 AATTT-GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAA
* * * * *
2034010 AAATCGTGAAAAATAGAAAACGAGTTGACTTGCCATAAAACTTCACGTGCAGGCTAAAGGGACCA
441 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * ** **
2034075 TTGTATGAATTTACAGGCGAAAAAAATTTCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
506 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
2034140 CACCTACCACCCTATCGATCCATGACTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
571 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
* * *
2034205 GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATC
636 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** *
2034270 -GAACTGGACCGAGG--GT---TGC--G----GCAGCACGTAGAGGGGGACCCGACCGATCCCCA
701 AG-ACCGGACTGAGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG
* *
2034323 GCTTGCGCATCCCGCTCCTCTGGCCGGCTGAGCGCCCCCACAG-TCGTTTCATGGGTTGACTTAG
765 GCTTGCGCATCCCGC-CCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAG
* * * *
2034387 GCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGA
828 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
*
2034450 ATTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
1 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* ** *
2034515 GGCACCATCGTCGGAGAACCTGACC-G-ACGACATTGGGGATCCGATGATCGGTGGGGCCGGTGG
66 GGCACCATCGTCGGAGAACCTGACCAGCA-G-CATTGGGGTTCCGGCGATCGGGGGGGCCGG-GG
*
2034578 GGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
128 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
2034643 TCAAACCTTGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
193 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
2034708 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
258 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
2034773 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGT
323 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGC
*
2034838 CAAAACTCCTTCCGGAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
388 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
2034903 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
453 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
2034968 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
518 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
2035033 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTC-CCCGCCCGCC
583 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-CGCCCGCCCGCC
* * * * *
2035097 CGTTCTTTTCGTTGGTTGGGTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTG
647 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * * ** * *
2035162 AGAGTTGTGGCAGCCGGATCGGTAGCACGTAGAGGGGGACTTGGCCGATCCCCGACTTGCGCATC
712 AG-GTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * *
2035227 CCGCCCATCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTT
776 CCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
2035292 CATTCCTAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGG
840 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * ** *
2035343 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTTATGCTGGTGCCATATTTTTCTTCGTCGG
1 ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
2035408 GGCACCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGAG
66 GGCACCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG-G
* * *
2035473 GTGTACGCACATGATGTGTGATGGGTGCT-GTACTCGGCCCTTATATTGGCCCCCTATCCCTCAT
129 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
2035537 CAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGC
194 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
2035601 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTT
259 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
2035666 TTGAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAATTTGGGGTC
324 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCC
* * * *
2035731 AAAACTCCTTCTGGAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGGAAAG
389 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
2035796 GAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTTAATTTA
454 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
2035861 CAAGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
519 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
2035926 ATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCGCCCGCCCGCCCG
584 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCG
* * * ** *
2035987 CTCGTTTTGTCGGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
649 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA-
** * * * * *
2036052 GGTTGCAGTAGTAGGATAAGCAGCACGCAGAGGGGGACCGCGATCGATCCTCGGCTTGCGCATCC
713 GGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACC-CGGTCGATCCCCGGCTTGCGCATCC
* *
2036117 CGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
777 CG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
2036182 ATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGTATAAGATCGGATCAG
841 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * * *
2036232 A-CTGAGGGTAGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
1 ATC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG
* * * * * * *
2036296 GGGCACCACCGTCGGAGCAACGCAGGAGAACCTGACTGGCGGCATTGAGGTTCCGACGAGCGGAG
65 GGGCACCATCGTCGGAG-AAC-C---TG-ACC--A---GCAGCATTGGGGTTCCGGCGATCGGGG
* * * *
2036361 GGGTCGGGGGGTGTGCACACATGATGCGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
119 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * * *
2036426 TATCCCTGATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTCATATTTTATAGGTTTGC
184 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2036491 TACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTAC
249 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
2036556 ACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCA
314 ACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
2036621 AGA-CTGGGGCCAAAACTCCTTTC-AAGAAAATTTTAAAAAAT-CTCGAACCACAAAAA----CA
378 A-ATTTGGGGCCAAAACTCCTTCCGAA-AAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCA
* * * *
2036679 AAATTCATG-AAAA-A-AAAATGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACC
440 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
2036741 ATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCTCGAAGAAATATGAAAGATGTGCCTAAA
505 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG-AAGATGTGCCTAAA
* * * *
2036806 CCCACCCTACCACCCTATCGAATCCATGGCTTGTGCAT-CCGTCTCTCTGCTGGCTGACGTAGCG
569 CCCA-CCTACCACCCTATCG-ATCCACGGCTTGCGCATCCCG--TCTCT-CTGGCCGACGTAGTG
** * * * * *
2036870 CTAGCCCGCCTGCCCGCCCGTTCGATTCGTC-GTTGGCTTAGGCATGCGAAGTTCATTCCCAGTC
629 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
2036934 TAAGATCAGACCGAACT-AGGCATCGTGACAACAGGATCGGCAGCACGGAGAGGGGGACCCTGTC
694 TAAGATCAGACCGGACTGAGG--TTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGTC
* * * * *
2036998 GATCCCCGGTTTGTGCATCCTGTTCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
757 GATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
2037063 GACTTAGACATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
821 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
2037128 A-CTGG
886 ATC-GG
* * *
2037133 ATCGAGGGTTGCAGCAGCACATCATCGAAGTTCATTTCGTGGCTTGGGCATGTGCTGGTGCTGCA
1 ATCGAGGGTTGCGGCAG--CA-CAT----G--C---T-G-GGCTCGGGCATGTGCTGGTGCCGCA
* * ** *
2037198 TTTTTCTTCA-CTGAGGCACCATCGCCGGAGCATCATCGGCCAACCTGATCGACGGCATTGGGGT
52 TTTTTCTTCATC-GGGGCACCATCGTCGGAG-A--A-C--CTGACC--A--G-CAGCATTGGGGT
* *
2037262 TCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCGCATGATGTGCAATGGGTGCTGGTACTTGGCC
105 TCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
2037327 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGGG
169 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
2037392 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
234 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
2037457 CACAAAATCTTGTACACTTCGAGTTTTTAGC-GAAATTTTTTTATGCATGCCAACAAAAATACAA
299 CACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTATGCATGCCAACAAAAATACAA
* * ** * ** ** **
2037521 GGATCACGTCTACCAAGTTTGGGGCAAAAAAGCCTTCCAAAAAAATTAAAAAAAATCCCAAACAA
363 GGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG
* * * *
2037586 CAAAAAGTTTGAATAATCATGAAAAA-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAG
428 CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
2037650 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
493 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
2037715 ATGTGCCTAAAGCCACCTACCATCC-ATCGATCCACGGCTTGCGCATCCCGTCTCT
558 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
2037770 ATGGGTCGGG
Statistics
Matches: 3691, Mismatches: 406, Indels: 218
0.86 0.09 0.05
Matches are distributed among these distances:
880 2 0.00
881 369 0.10
882 217 0.06
883 1 0.00
884 3 0.00
887 3 0.00
888 97 0.03
889 191 0.05
890 7 0.00
891 5 0.00
892 589 0.16
893 296 0.08
894 120 0.03
895 23 0.01
896 22 0.01
897 24 0.01
898 33 0.01
899 66 0.02
900 141 0.04
901 220 0.06
902 269 0.07
903 122 0.03
904 329 0.09
905 6 0.00
907 1 0.00
908 1 0.00
909 1 0.00
910 1 0.00
912 1 0.00
913 2 0.00
914 3 0.00
915 170 0.05
916 200 0.05
917 16 0.00
918 8 0.00
919 19 0.01
920 22 0.01
921 91 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
GGCACCATCGTCGGAGAACCTGACCAGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGT
TGTGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
Found at i:2037107 original size:26 final size:26
Alignment explanation
Indices: 2037071--2037122 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2037061 TTGACTTAGA
*
2037071 CATACTGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
2037097 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
2037123 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:2038588 original size:18 final size:18
Alignment explanation
Indices: 2038561--2038702 Score: 56
Period size: 22 Copynumber: 7.1 Consensus size: 18
2038551 AAATCAAAAA
2038561 AATATTATAAGAAAAATAAT
1 AATA-TATAA-AAAAATAAT
* *
2038581 AATA-ATAAATAAATTAT
1 AATATATAAAAAAATAAT
*
2038598 AATATATAATAAATATAGA-
1 AATATATAA-AAAAATA-AT
*
2038617 ACTATATAAATAAAATACAT
1 AATATATAAA-AAAATA-AT
*
2038637 ATAAATATTAACAAAAATAAAT
1 A-ATATA-TAA-AAAAAT-AAT
*
2038659 AAATAAATAAGTAAAAAT-AT
1 -AATATATAA--AAAAATAAT
2038679 ACATATAATAATAATAAATAAT
1 A-ATAT-ATAA-AA-AAATAAT
2038701 AA
1 AA
2038703 AATACATAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 29
0.68 0.10 0.21
Matches are distributed among these distances:
17 11 0.12
18 9 0.10
19 19 0.20
20 14 0.15
21 15 0.16
22 22 0.24
23 3 0.03
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (18 bp):
AATATATAAAAAAATAAT
Found at i:2038712 original size:55 final size:53
Alignment explanation
Indices: 2038576--2038712 Score: 127
Period size: 55 Copynumber: 2.5 Consensus size: 53
2038566 TATAAGAAAA
** * **
2038576 ATAATAATAATAAATAA-ATTATAATATATAATAAATATAGAACTATATAAAT
1 ATAATAATAATAAATAATAAAATAATAAATAATAAATATAGAAAAATATAAAT
* * * *
2038628 AAAATACAT-ATAAATATTAACAAAAATAAATAAATAAATA-AGTAAAAATATACAT
1 ATAATA-ATAATAAATAATAA-AATAATAAAT-AATAAATATAG-AAAAATATAAAT
2038683 ATAATAATAATAAATAATAAAATACATAAA
1 ATAATAATAATAAATAATAAAATA-ATAAA
2038713 ATACAAAAGA
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
52 12 0.18
53 3 0.05
54 14 0.21
55 37 0.56
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (53 bp):
ATAATAATAATAAATAATAAAATAATAAATAATAAATATAGAAAAATATAAAT
Found at i:2038715 original size:24 final size:23
Alignment explanation
Indices: 2038628--2038715 Score: 56
Period size: 27 Copynumber: 3.7 Consensus size: 23
2038618 CTATATAAAT
* *
2038628 AAAATACATATAAAT-ATTAA-CA
1 AAAATACATA-AAATAATAAATAA
* *
2038650 AAAATAAAT-AAATAAATAAGTAA
1 AAAATACATAAAAT-AATAAATAA
2038673 AAATATACATATAATAATAATAAATAA
1 AAA-ATAC--ATAA-AATAATAAATAA
2038700 TAAAATACATAAAATA
1 -AAAATACATAAAATA
2038716 CAAAAGAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
20 4 0.08
22 11 0.22
23 4 0.08
24 7 0.14
25 4 0.08
26 2 0.04
27 13 0.25
28 6 0.12
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.26
Consensus pattern (23 bp):
AAAATACATAAAATAATAAATAA
Found at i:2039600 original size:26 final size:26
Alignment explanation
Indices: 2039564--2039616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2039554 GTTGACTTAG
2039564 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2039590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2039616 G
1 G
2039617 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2041414 original size:26 final size:26
Alignment explanation
Indices: 2041374--2041424 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2041364 TTGACTTAGG
* *
2041374 ATACAGAGTTGATTCCCAGTTTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
2041400 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
2041425 ATCGGACCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:2041644 original size:901 final size:902
Alignment explanation
Indices: 2038840--2050906 Score: 15493
Period size: 901 Copynumber: 13.5 Consensus size: 902
2038830 AGGTAGGATT
* * * *
2038840 GGGTTCCGGCGATTGGAGGGGCC-GGGGGGTGTGCACACATCATGTGTGATGGGTGCTGGTACTT
1 GGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
2038904 GGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
2038968 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTATCTAAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
2039033 TGGTCACAAAATCTTGTACGCTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * *
2039098 CAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTTCGAAAATATTTTAAAAAATCCTGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * * * * *
2039163 CCGCAAAAAGTTTAAAAAATCATGAAAAATTGAAAACGATTCGTCTTGCCGTGAAACTTCATGTG
325 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
2039228 AAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * *
2039293 AAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
2039358 GGCGTAAT----GACCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
520 -GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * **
2039419 TTCCTAGTATAAGATTGCACCAGACCGAGGGTTGCGGCAGTAAGATCAACAGCACAT-AGAGGGG
584 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCAC-TCAGAGGGG
** * **
2039483 GACCC-AGTTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGT
648 GACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
2039547 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGT
712 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * *
2039612 CTAAGATCAGATCGGACCGAGGGTTATGACAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCGC
777 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
2039677 ATTTTTCTTCTTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGATCGGCAGCATTG
842 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
2039738 GGGTTTCGGCGATCGGGGGAGCCGGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTT
1 GGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
2039803 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
2039868 TGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
2039933 TGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTACATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
2039998 CATGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATTCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* *
2040063 CCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTG
325 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
**
2040128 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
2040193 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * **
2040258 GACGTAATGCCCGCCCGCCTGCCCGCCCGTCCGCTCGTTTCGTCAATTGGCTTAGGCATACGGAG
520 G-CGTAGTGCCCG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
2040323 TTCATTCCCAGTCTAAGATCGCACCAGACCGAGGGTTGCCGCAGCAAGATCGGCAACACGCAGAG
580 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAG
* *
2040388 AGGGACCCGACCGATCCCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
645 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
2040452 GTTTCGTGGGTTAATTTAGGCATACGAAGTTCATTCCCAGTCTAAGCTTATGGAGTTCATTCCCA
710 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * **
2040517 GTCTAAGATCAGATCAGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTG
775 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * * *
2040582 GTATTTTTCTTTGCCGAGGCACCATCGACGGAGCGTCGCCGGAGAACCTGACCGGCAGG-ACTA
840 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC-GGCATTG
** * * *
2040645 GGGTTTTGGTGATCGGGGGGGCC-GGGGGGTATGCGCACATGATGTGCAATGGGTGCTGGTACTT
1 GGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
2040709 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
2040774 TGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTTG-AATGGGGACA-TTTTTTCAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAA
* * * *
2040837 ATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTGTTTTATGCATGTCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
2040902 ACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
* * * * *
2040967 ACCGCAAAACGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * * *
2041032 GAAGGCTTAAGGCACCATTGTGTGAAGTTACAAGCCATAAAAATGGCATTGGCATACAGGAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
2041097 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCCGTCTCTCTAGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
2041162 CAGCGTAGTGCCCGCCCACCCGTCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTC
519 C-GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * **
2041227 ATTCCCAGTCCAAGATCGGACCAGACCAAGGGTTGCGGCAGTAAGATCGGTGGCACTCAGAGGGG
583 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGGG
* ** * * *
2041292 GGCCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCGTT
648 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
2041357 TCGTGGGTTGACTTAGG-ATACAGAGTTGATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTC
713 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
2041421 TAAGATCGGACCGTACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
778 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
2041486 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCTGCATTG
843 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* *
2041546 GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTG
1 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2041611 GCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * *
2041676 GAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTGAATT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
2041741 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
2041806 ----A--A-G----CC-A---T------AAAAATCCTTTCAAAAAAATTTTAGAAAATCCCGAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * * *
2041850 CGTAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACAAGTCATCTTGCCGTGAAACTTGACGTGA
326 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
2041915 AGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC-------T--
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * * *
2041971 -GA------T---CCCACCTACCACGCTATCGATCCACGGCTTACGCATCCCGTCTCCCTGATCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCC
* * * *
2042026 GCGTAGTGCCCGCCCGTCTGGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
520 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * *** * ** *
2042091 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCATGATCAATAACACGAAAAGGGGGA
585 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGGGGA
* * * *
2042156 CCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTC
650 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * * * *
2042221 ATTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCGA
715 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
2042286 AGATCGAACTGGACCGAGGGTTGCGGCACCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATT
780 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
2042351 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGTATTG
845 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
2042409 GGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTACGATGGGTGCTAGTACTT
1 GGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
2042474 GGCCCTTATATTCGCCCCCTGTCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
2042539 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
2042604 TGGTCAAAAAAT-TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
2042668 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAACTCTAAAAAATCTCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * *
2042733 CCGTAAAAAGTTTTAAAATTCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
325 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* ***
2042798 AAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * *
2042863 AAGATGTTCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
2042928 GACGTATTGCCCGCCCGCTCGCCCGCACACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
520 G-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
2042993 TTCCTAGTATAAGATTGGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCA-TGCAGAGGGG
584 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACT-CAGAGGGG
* * * * * * *
2043057 GACCCAACCGATCCCTGGCTTGTGCATCTCC-CCCCTCTAGTCGACTGAGCGCCCGCACACTCGT
648 GACCCGACCGATCCCCGGCTTGCGCATC-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
2043121 TTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCTCAGT
712 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* ** * ** * *
2043186 CTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTGGGCTCTAGAATGTGCTGGTGCCCC
777 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* ** ** *
2043251 ATGTTTCTTCACCGGGGCACCATC-TCCGGAGCATCTACGGAGAACCTGACTGGCGGCATTG
842 ATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** * *
2043312 GGGTTCTGATGATCGGGTGGGCCGGAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACT
1 GGGTTCCGGCGATCGGG-GGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
2043377 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * * *
2043442 TTGAGATTTTGCAGGTATGCTACCAGCAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
2043507 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
2043572 A-AAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAAA-TTTAAAAAATCCCG
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAAAATTTTAAAAAATCCCG
** ** ** * * * *
2043635 AACTATAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCGTGAAAGTTCACA
323 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
2043700 TGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* * *
2043765 TGAAGATGTGCCTAAACCCAACTACCACCTTATCGATCCACGGCTTGCGCATCCCATCTCTCTCG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-G
* * * * *
2043830 TCAGCGTAGT--------GCTCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGTCATACGGAGTT
517 GCCGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
2043887 CATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACTCA-AGGG
582 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGG
* * * ** * *** * * ** *
2043951 GGTGCCCGACCGATCCACGGTTTATGCATCTCGGTTCTCTAGCCGGTTGAATGCCCGTACGCTCG
647 GG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
2044016 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A----C--
711 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
2044068 -C----A----A----ACCGAGGTTTGTGGTAGCACATGCTGGCCTCGAGCATGTGCTGGTGCTG
776 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * * * *
2044120 CATTTTTCCTCGTTAGGGCACCAAC-ACTGGCGCATCGCCGGAGAACCTGACCGACGGCATTG
841 CATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
2044182 CGGTTCCGAC-AGTCGAGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACT
1 GGGTTCCGGCGA-TCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
2044245 TGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * * *
2044310 TTGAGATTTTGCAGGTATGCTGCCAGTAGCAATTAAAGTGTATAAAATGGGGACACTTTATTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
** * *
2044375 ATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATGTTTTTGTGCGTGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
2044440 AGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATT-CGAAAAAAGTTTAAAAAATCTCG
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCCCG
* * **
2044504 AACCGCAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
323 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
2044569 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* *
2044634 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCACATCCCGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
**
2044699 CCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTT
518 CCG-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
2044760 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGG
582 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGG
*
2044825 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGT
647 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* **
2044890 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGT
712 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * * **
2044955 CTAAGATCGGACTGGACCAAGGGTTATGGCAACACATGCTGGGCTCTGGCATGTGCTGGTGCCTT
777 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
2045020 ATTTTTCTTCGTCGGGGCACCATCGTTGGTGCATCACCGGAGAACCTGACCGGCGGCATTG
842 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** *
2045081 GGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGGCGATCG-GGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
2045146 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
2045211 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
2045276 ATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** * * * * *
2045341 ATGAGGATCACGTCTACCAATTTTAGGGCCAAAAATCCTGCCGAAAAAAATTTT-AAAAATCCCT
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCCG
*
2045405 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
323 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * **
2045470 TGAAGGGTTAAGGGACCATTTTATGAATTTACATGCCATAAAAATGGCACTGGCACGTAGAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
2045535 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * *
2045600 CCGACGTAGTGTCCGTCCGTCCGCCAGCCCTCTCGTTTCATCGGTTGGCTTAGGCGTACAGGAAT
518 CCG-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGT
* * * * *
2045665 TCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCTCGT-AGAG
581 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCAC-TCAGAG
* * * * * * * * ** *
2045729 GGGGACCCGATCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGGTTGAGCACCTGGATACTT
645 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * * *
2045794 ATTTCATTGGTTGACTTAAGCATAAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
710 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
2045859 GTCGAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG-TTGGGAATGTGCTGGTGAC
775 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
2045923 GCAATTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTG
840 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
2045986 GGGTTCCGACGATCGGGGGGGGCCGGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGTTA
1 GGGTTCCGGCGATC--GGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
2046051 CTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTCAAAGAGC
62 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
2046116 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAATTGGGGACACATTTTTC
127 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
2046181 AAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
192 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * ** **
2046246 ATACAAGGATCTCGTCTACCAAGCTTGCAG-CAAAGTGTCCTTCCAAAAAAATTTTAAAAAATCC
257 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
2046310 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTTTTGCCATGAAACTTCA
321 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** *
2046375 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAA
386 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * * * * *
2046440 TATGAAGATGTGCCTGAACCAACCTACCACCCTATCGATCAATGGCTTGCGCATACTGTCTCTCT
451 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * *
2046505 GGTAGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGCG
516 GG-CCGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
2046566 TTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTAGGATCCGTAGC-TTGCAGA
580 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACT-CAGA
* * * ** * *
2046630 GGGGGACCCGACCTATCCCCGGCTTGTGCATCCTGCCCCTCTGGTTGGCTGAGCGCCTGAACGCT
644 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * *
2046695 CGTTTCGTGGGCTGACTTAGGCATAAGGAGTTTATTCGCAGTCTAAGCATACGAATTTCATTCCC
709 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** * *
2046760 AGTCTAAGATCGGACTGGACTGAGGGTTATGGCAGCATATGCTAGGCTCGGGCATGTGCTGGTGC
774 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * *
2046825 CACATTTTTCTTCATCGGGGCACCATCG-CAGGAGCATCGCCGGAGAACCTGACCGGCAGCATTA
839 CGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * ** *
2046889 GGGTTCCGGTGATCGGGGGGGCCGGGGTGGGTGTGCACACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGGCGATC-GGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2046954 TGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
2047019 TTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
2047084 ATGGTCACAAAATGTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
2047149 ACAAGGATCTCGTCTACCAAGTTTGCGGCCAAAACTCCTTCCAAAAAAACTTTAAAAAATCTCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
** * * *
2047214 ACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
2047279 GAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATGT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
*
2047344 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
**
2047409 CGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTC
519 C-GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *** ** * * * * * *
2047470 ATTCCCAATCTAAGATTGGAATGGATTGAAGGTTGTGGCAGTAAGACCGGTAGCA-TGCAGATGG
583 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACT-CAGAGGG
* * * * * *
2047534 GG-CCCTAACCGATCCCCGGTTTGTGCATCCCGCCCCTC-GACCGGCTGAGCGCCCACACACTCG
647 GGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * *
2047597 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTTATTTCCAG
711 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** **
2047662 TCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGATG
776 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
2047727 CTTTTTTCTTCGTTGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGACCGGCAGCATTG
841 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
2047789 AGGTTTCGGTGATCGGGGGGGCCGGGGGGCGGTGTGCGCACATGATGTGCGATGGGAGCTGGTAC
1 GGGTTCCGGCGATC-GGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
2047854 TTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTGACACCCCCTTAAAGGGCA
63 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
2047919 TTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCA
128 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
2047983 AATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-C--C---AA
193 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
2048042 -AC---GATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCTG
258 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
* *
2048103 AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAAC-TCACG
323 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * ** *
2048167 TGAAGGCTTTAGGGACCATTGAACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* * *
2048232 TGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAACGGCTTGCGCATCTCGTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
2048297 CCGCGCGTAGTGCACGCCCGCCCACCTGCCCGCT-GTTTCGTCGATTGGCTTAGGCATACGGACT
518 -C-CGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** ** *
2048361 TCATTCCCACTCTAAGATCGGACCCGATTGAGGGTTGCGATAGCAAGATCGGTAGCACAT-AGAG
581 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCAC-TCAGAG
** * * *
2048425 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGTTC
645 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* **
2048490 ATTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCC
710 GTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
2048554 GGTCTAAGATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGGCTCTGGCATGTGCTGGTGT
774 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
2048619 CGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTG
839 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
** *
2048683 GGGTTCCGGCGATCGGGGGGGCCGGGGTGGGTGTGCGCACAAAATGTGGGATGGGTGCTGGTACT
1 GGGTTCCGGCGATC-GGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2048748 TGGCCCTTATGTTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
2048813 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTATCTTAAATGGGGACATTTTTTTGAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
** *
2048878 ATGGTCACAAAATCTTAAACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** * **
2048943 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATATTAGGAAATCCCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
* * * * * **
2049008 ACTGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAATTTTCACGT
324 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ** *
2049073 GAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
2049138 GAAGATGTACCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCACATCCCGTCTCTCT-GC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
2049202 AAAGCGTAGTGCCCGCCCACCCGCCCGCTCGCTTGTTTCGTCGGTTGGCCTAGGCATACGGAGTT
519 --CGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * ** * * * *
2049267 CATTCCCAGTCTAAGAAT-AGACTGGATCGAGGGTTGCAACAGCAGGATCGACAGTACCCAGAGG
582 CATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGG
*** ** ** * *
2049331 GGGACCCGATATATCCTTGATTTGCGCATCTCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCG
646 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * ** * *
2049396 TTTCATGGGTTGAATTACGCATACATAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAG
711 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
2049461 TCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGACA
776 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * **
2049526 CATTTTTCTTCGCCGGGGCACCATC-ACTGGAGCATCGCTGGAGAACCTAACCAACGGCATTG
841 CATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
2049588 GGGTTCCGGTGATGGGGGGGTC-GGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
1 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2049652 GCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
2049717 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
2049782 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
2049847 AAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * *
2049912 TGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACTAGTCGTCTTGCCATGAAACTTCACGTGA
326 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
2049977 AGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACACAGAAATATAA
391 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * *
2050042 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCCCTGGTCG
456 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
2050107 ACGTAGTGCCCGCCCGCCTGTCTGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
521 -CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
2050172 TCCCAGTCTAAAATCTGACCAGACCGAGGGTT---GTAGC-A-A----CA-C-GT-AGAGGGGGA
585 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGGGGA
** * * * * ** *
2050225 CCCGGTCGATCCTCGGCATACACATCCCGCCCCTCTGGCCGATTGAGCGCCCGTACGCTCGTTTC
650 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
2050290 GTGGGTTGACATAGCCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTA
715 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * *
2050355 AGATTGAACCAAACCGAGGGTTACGGTAGCACATG-TCGGGCTCGGGC-TAGTG-TCGGTGTCGT
780 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCAT-GTGCT-GGTGCCGC
* * **
2050417 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGATGGCATTG
842 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * *
2050478 GGGTTTCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGTACTTG
1 GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** *
2050542 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAAAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
2050607 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTATTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2050672 GGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAC
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
2050737 AGGGATCACGTCTACTAAGTTTTGGGCCAAAACTCGTT-CAAAAAGAATTTTAAAAAATCTCGAA
261 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-AATTTTAAAAAATCCCGAA
* *
2050801 CCATAAAAAGTTTGC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
325 CCGTAAAAAGTTT-CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
2050865 GAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAA
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
2050907 GGGACCATCG
Statistics
Matches: 9765, Mismatches: 1218, Indels: 380
0.86 0.11 0.03
Matches are distributed among these distances:
862 219 0.02
863 212 0.02
864 175 0.02
865 1 0.00
867 1 0.00
868 229 0.02
869 236 0.02
870 101 0.01
871 4 0.00
873 186 0.02
874 12 0.00
875 2 0.00
876 1 0.00
878 2 0.00
880 1 0.00
881 140 0.01
882 1 0.00
884 140 0.01
885 1 0.00
887 2 0.00
889 132 0.01
890 717 0.07
891 7 0.00
893 258 0.03
894 293 0.03
895 13 0.00
896 181 0.02
897 7 0.00
898 18 0.00
899 165 0.02
900 700 0.07
901 1598 0.16
902 881 0.09
903 507 0.05
904 527 0.05
905 925 0.09
906 383 0.04
907 663 0.07
908 123 0.01
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACTCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
Found at i:2043175 original size:26 final size:26
Alignment explanation
Indices: 2043139--2043189 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2043129 TTGACTTAGG
*
2043139 CATATGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
2043165 CATACGGAGTTCATTCTCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2043190 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:2045841 original size:26 final size:26
Alignment explanation
Indices: 2045810--2045861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2045800 TTGGTTGACT
2045810 TAAGCATA-AGGAGTTCATTCCCAGTC
1 TAAGCATACA-GAGTTCATTCCCAGTC
2045836 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2045862 GAAGATCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:2047645 original size:26 final size:26
Alignment explanation
Indices: 2047615--2047667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2047605 GTTGACTTAG
*
2047615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2047641 GCATACAGAGTTTATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2047667 G
1 G
2047668 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2048538 original size:26 final size:26
Alignment explanation
Indices: 2048509--2048561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2048499 GTTGACTTAG
*
2048509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2048535 GCATATAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2048561 G
1 G
2048562 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2049444 original size:26 final size:26
Alignment explanation
Indices: 2049414--2049466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2049404 GTTGAATTAC
* *
2049414 GCATACATAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2049440 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2049466 G
1 G
2049467 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2050341 original size:26 final size:26
Alignment explanation
Indices: 2050305--2050356 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2050295 TTGACATAGC
2050305 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* *
2050331 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
2050357 ATTGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:2051173 original size:26 final size:26
Alignment explanation
Indices: 2051136--2051188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2051126 GTTGACTTAG
**
2051136 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2051162 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
2051188 G
1 G
2051189 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2051720 original size:835 final size:820
Alignment explanation
Indices: 2050130--2051741 Score: 2266
Period size: 835 Copynumber: 1.9 Consensus size: 820
2050120 CCGCCTGTCT
* *
2050130 GCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCTGACCAGA
1 GCCCACTCATTTCGTCAGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAAATCTGACCAGA
*** *
2050195 CCGAGGGTTGTAGCAACACGTAGAGGGGGACCCGGTCGATCCTCGGCATACACATCCCGCCCCTC
66 CCGAGGGTTGTAGCAACACGTAGAAAAGGACCCGGCCGATCCTCGGCATACACATCCCGCCCCTC
* * *
2050260 TGGCCGATTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACATAGCCATACAGAGTTCATTCCCAG
131 TAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGCCATACAGAGTTCATTCCCAG
* * * *
2050325 TCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTGAACCAAACCGAGGGTTACGGTAGCACATG
196 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAAACCGAGGGTTACGGTAGCACACG
* * * *
2050390 TCGGGCTCGGGCTAGTGTCGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
261 TCAGGCTCGGGCAAGTGTCGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* ** * *
2050455 GAAGAACCTGACCGATGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
326 GAAGAACCTGACCGACGGCATTAAGGTTTCGACAATCGGGGGGCCGGGGGGTGTGCGCACAAGAT
*
2050520 GTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAAAACT
391 GTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACT
* * *
2050585 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
456 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTACCAGTAGCCATTAAAGTGTCTGA
**
2050650 AATAGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
521 AATAGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATTTTT
* * *
2050715 TTATGCATGCCAAAAAAAATACAGGGATCACGTCTACTAAGTTTTGGGCCAAAACTCGTTCAAAA
586 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCAAAA
* * ** * *
2050780 AGAATTTTAAAAAATCTCGAACCATAAAAAGTTTGCAAAATCGTGAAAAATAGAAAACGAGTCGT
651 AGAATATTAAAAAATCTCCAACCATAAAAAGTTTAAAAAATCGTAAAAAATAGAAAACGAGTCAT
* * *
2050845 CTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAGGG
716 CTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGGG
2050910 ACCATCGATCCCGTCTCTCAGGTCGGGGTGGTGCCCGCCC
781 ACCATCGATCCCGTCTCTCAGGTCGGGGTGGTGCCCGCCC
* * *
2050950 GCCCACTCGTTTCGTCAGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGG
1 GCCCACTCATTTCGTCAGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAAATCT-GACCAG
* * ***
2051014 ACTGAGGGTTGTAACAGCAGGATCGACAGCATGCAGAAAAGGACCCGGCCGATCCTCGGCTTGTG
65 ACCGAGGGTTGT---AGCA--A-C-AC-G--T--AGAAAAGGACCCGGCCGATCCTCGGCATACA
* * * * *
2051079 CATCCCGCCCCTCTAGCCGGCTGAGCGTCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAG
118 CATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGCCATACAG
** **
2051144 AGTTCATTCCTTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGT
183 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-AGAACCAAACCGAGGGT
* *
2051208 TGCGGTAGCACACG-CTAGGCTCGGGCAAGTG-CTGGTGCCATATTTTTTTTCGTCGGGGCACCA
247 TACGGTAGCACACGTC-AGGCTCGGGCAAGTGTC-GGTGCCATATTTTTCTTCGTCGGGGCACCA
* * * *
2051271 TCGTTGGAGCATTG-CTGGAGAACCTGACTGACGGCATTAAGG-TTCTGACAATCGGGGGGGCCG
310 TCGTCGGAGCATCGTC-GAAGAACCTGACCGACGGCATTAAGGTTTC-GACAATC-GGGGGGCCG
* * *
2051334 AGGGGAGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATC
372 -GGGG-GTGTGCGCACAAGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
2051399 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTGGCTACC
435 CCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTACC
* * *
2051464 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTT
500 AGTAGCCATTAAAGTGTCTGAAATAGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTT
* *
2051529 AAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
565 AAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** * *
2051594 TTTGCCAAAACTCCTTCCGAAAA-AATATTAAAAAATCTCCAACCGTAAAAAGTTTAAAAAATCG
630 TGGGCCAAAACTCCTT-CAAAAAGAATATTAAAAAATCTCCAACCATAAAAAGTTTAAAAAATCG
*
2051658 TAAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCAGGTGAAGGCTTAAGGGACCATTGTAT
694 TAAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTAT
2051723 GAATTTACAAGCCATAAAA
759 GAATTTACAAGCCATAAAA
2051742 ATGGCATTGG
Statistics
Matches: 691, Mismatches: 79, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
819 1 0.00
820 68 0.10
823 4 0.01
825 1 0.00
826 1 0.00
827 2 0.00
828 1 0.00
830 1 0.00
831 6 0.01
832 226 0.33
833 10 0.01
834 4 0.01
835 361 0.52
836 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (820 bp):
GCCCACTCATTTCGTCAGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAAATCTGACCAGA
CCGAGGGTTGTAGCAACACGTAGAAAAGGACCCGGCCGATCCTCGGCATACACATCCCGCCCCTC
TAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGCCATACAGAGTTCATTCCCAG
TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAAACCGAGGGTTACGGTAGCACACG
TCAGGCTCGGGCAAGTGTCGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
GAAGAACCTGACCGACGGCATTAAGGTTTCGACAATCGGGGGGCCGGGGGGTGTGCGCACAAGAT
GTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTACCAGTAGCCATTAAAGTGTCTGA
AATAGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATTTTT
TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCAAAA
AGAATATTAAAAAATCTCCAACCATAAAAAGTTTAAAAAATCGTAAAAAATAGAAAACGAGTCAT
CTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGGG
ACCATCGATCCCGTCTCTCAGGTCGGGGTGGTGCCCGCCC
Found at i:2052484 original size:881 final size:842
Alignment explanation
Indices: 2051288--2053788 Score: 3309
Period size: 881 Copynumber: 2.9 Consensus size: 842
2051278 AGCATTGCTG
* * * * * * *
2051288 GAGAACCTGACTGACGGCATTAAGGTTCTGACAATCGGGGGGGCCGAGGGGAGTGTGCGCACAAG
1 GAGAACCTGACCGGCGACATTGAGGTTCCGACGATCGGGGGGGCCG-GGGG-GTGTGCGCACATG
* *
2051353 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAA
* * *
2051418 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTGGCTACCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
2051483 GAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTT
***
2051548 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTTGCCAAAACTCCTTCCG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
2051613 AAAAAATATTAAAAAATCTCCAACCGTAAAAAGTTTAAAAAATCGTAAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATC-CCAACCGCAAAAA-TTTAAAAAATCATGAAAAATAGAAAACGAGTC
* * *
2051678 ATCTTGCCATGAAACATCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
387 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2051743 TGGCATTGGCATGCAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGATCCACGGC
452 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
2051808 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGTACGCCCGCTCGTTTCGTCGGTTAGCTTA
517 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CGCCCGCTCATTTCGTCGGTTGGCTTA
* * * *
2051873 GGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAAGGTTACAGCAGCAGGATCAGC
580 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGCAGCAAGATC-GC
*
2051938 AGCACGCAGAGGGGGACCCTG-TCGATCCTCGGCCTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
644 AGCACGCAGAGGGGGACCC-GATCGATCCTCGGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
2052002 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
708 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
2052067 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGAATGCGCTGGTGCTGCATTTTTCTTCAT
773 CAGACCGAGGGTTACGGCAGCACATGCTGGGCTC----A-------GTGCCGCATTTTTCTT--T
*
2052132 CGGGGCACCATCACCAAAGCATCACCGAAGCATCGCCA
825 ----G--------CC--AGCA-CA-C----CATCACCA
* * * *
2052170 GAGAACCTGTCCGGCGACTTTGGGGTTCCGGCGATCGGGGGGGCCGGGGAGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGACATTGAGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGA
* * *
2052235 TGTGGGATGGGTGCTGGAACTTGGCCCTTATATTGACCTCCTATCCCTCATCAAACCTCGAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
2052300 TCACAGCCCTTTAAAGAGCATTTGACATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
2052365 AAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTT
195 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTT
* **
2052430 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAGC-CCTTTTG
260 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCG
* * * * **
2052494 AAAGAATTTTAAAAAATCCTGAACCACGAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTC
324 AAAAAATTTTAAAAAATCC-CAACCGC-AAAAATTTAAAAAATCATGAAAAATAGAAAACGAGTC
* *
2052559 GTCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
387 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
2052624 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CTCTATCGATCCACGGC
452 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
2052688 TTACGCATCCCATCACTTTGGCTGGCGTAGTGCCCGCCCGCCCGGCCGCTCACTCATTTCGTCGG
517 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--CG--C--CCG----CTCATTTCGTCGG
* * *
2052753 TTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCA
572 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGCAGCA
* * * *
2052818 AGATCGACAGCATGCAGAGGGGGACCCGATCGATCC-CCGACTGGCGCATCTCGCCCCTCTGGCC
637 AGATCG-CAGCACGCAGAGGGGGACCCGATCGATCCTCGGCCT-GCGCATCCCGCCCCTCTGGCC
* * *
2052882 GACTGAGCG-CCGCACGCTCATTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
700 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2052946 GATCTGATCGGATCGAGGGTTACGGCAGCACATGTTGGGCTCAGTGCCGCATTTTTCTTTGCCAG
765 GATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGTGCCGCATTTTTCTTTGCCAG
* *
2053011 GACACCATCACCG
830 CACACCATCACCA
* *
2053024 GAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGGCCAGGGTGGTGTGCGCACATGA
1 GAGAACCTGACCGGCGACATTGAGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
* *
2053089 TGTGCGATAGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-AGA
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGA-A
2053152 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
2053217 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTT
* * *
2053282 TTTTGTGTAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
2053347 AAAAAATTTTAAAAAATCCCAAACCGCAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCG
324 AAAAAATTTTAAAAAATCCC-AACCGCAAAAATTTAAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
2053412 TCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATCAAAAT
388 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
2053477 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
453 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
2053542 TGCACATCCCGTCTCTCTGGCCGGCGT-GATG-CC-CGCCCGCTCATTTCGTCGGTCGGCTTAGG
518 TGCGCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCGCCCGCTCATTTCGTCGGTTGGCTTAGG
* * * * *
2053604 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTCA-CAGCAAGATTGGTA
582 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTT-ACAGCAGCAAGA-TCGCA
* *
2053668 GGACACG-A-AGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
645 -G-CACGCAGAGGGGGACCCGATCGATCCTCGGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
2053731 CCCCGTATGCTCATTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
708 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2053789 CATACGGAGT
Statistics
Matches: 1440, Mismatches: 152, Indels: 94
0.85 0.09 0.06
Matches are distributed among these distances:
841 119 0.08
842 57 0.04
843 3 0.00
845 3 0.00
847 1 0.00
849 2 0.00
852 146 0.10
853 280 0.19
854 80 0.06
855 3 0.00
858 1 0.00
859 2 0.00
860 3 0.00
862 2 0.00
870 1 0.00
874 1 0.00
876 15 0.01
880 49 0.03
881 404 0.28
882 43 0.03
883 1 0.00
884 3 0.00
887 94 0.07
888 127 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (842 bp):
GAGAACCTGACCGGCGACATTGAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCAACCGCAAAAATTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGCAGCAAGATCGCAGCACGC
AGAGGGGGACCCGATCGATCCTCGGCCTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTACGGCAGCACATGCTGGGCTCAGTGCCGCATTTTTCTTTGCCAGCACACCATCACCA
Found at i:2053798 original size:26 final size:26
Alignment explanation
Indices: 2053762--2053814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2053752 GTTGACTTAG
*
2053762 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2053788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2053814 G
1 G
2053815 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2053915 original size:185 final size:184
Alignment explanation
Indices: 2053603--2054021 Score: 576
Period size: 185 Copynumber: 2.3 Consensus size: 184
2053593 GTCGGCTTAG
*
2053603 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTCACAGCAAGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG-CACAGCAAGATCGGTA
* * * *
2053668 GGACACGAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCCC
65 GCACACGAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCCC
* * **
2053733 CCGTATGCTCATTTTGTGAGTTGACTTAGGCATACGGAGTTCATTC-CTAGTCTAA
130 CCGCACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTCTC-AGTCTAA
* *
2053788 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCATCAGTAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCA-CAGCAAGATCGGTA
*
2053853 GCATGCA-G-AGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGG-TCAGCTGAG
65 GCA--CACGAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCT-AGCTGAG
* * * * *
2053915 CGCCCGCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCTCAGTTTAA
127 CCCCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
* * *
2053973 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC
2054022 GGCAGCACAC
Statistics
Matches: 208, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
184 3 0.01
185 201 0.97
186 2 0.01
187 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCACAGCAAGATCGGTAG
CACACGAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCCCC
CGCACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
Found at i:2056912 original size:882 final size:882
Alignment explanation
Indices: 2053788--2056947 Score: 4099
Period size: 884 Copynumber: 3.5 Consensus size: 882
2053778 CCTAGTCTAA
* * * **
2053788 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGC-ATCAGTAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGT-AGCAAGATCGCA
** * * *
2053852 AGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCAGCTGAGCG
65 AGCACACAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGCTGAGCG
* * * * * *
2053917 CCCGCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATT-CTCAGTTTAAGCATACGG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCT-AGTCTAAGCAAACGG
* * ** * * *
2053981 AGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGGCAGCACACGCTGGGCTCGAGCA
194 AGTTCATTCCCAGTCTAAGATCAAACTGGACC-AAGGTTGCGGCAGCACATGCTGGGCTCGGGCA
2054046 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACC
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGAACCTGACC
* *
2054111 -AGCGGCATTAGGGTTCCGGTGATCGGGGGGTCGGGGGGGTTGTGCGCACATGATGTGCAATGGG
312 GA-CGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCAATGGG
*
2054175 TGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCC-CATCAAACCTCGAGAACTCACACCCCCT
375 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * * *
2054239 TAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCAGTAAAGTGTCTAAAATAGGGACA
440 TAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
2054304 CTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTATGCATGC
505 CTTTTTTCAAATAGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
2054369 CAACAAAAATACAAGGATCATGTCTACTAAGTTTTGGGCTAAAACTCCTTCAAAAAAAATTTTAA
570 CAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
* ** *
2054434 AAAATCTCTAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
635 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
2054499 AACTTAACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCAC
700 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* ** * *
2054564 ATAGAAATATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGACTTGCGCTTCCCG
765 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
2054629 TCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
830 TCTCTCTGGCCGGCGTAGT----GCCCGCCCG-CC-CCT-----CT--TTTCGTCTGTTGGCTTA
2054694 G
882 G
* * * * * * * *
2054695 GCCTACAGAG-TCATTCCCAGTCTAAAGATAGAATCA-AATCGAGGGTTACGGCAGCAAGATTC-
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCGGACCAGACT-GAGGGTTGCGGTAGCAAGA-TCG
* * * * *
2054757 CGTAGCACGCAGAGGGGGACCGCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGGTCAGGC
63 C-AAGCACACAGAGGGGGACC-CGATCGATCCCCGACTTGAGCATCCCACCCCTCT-GGTC-GGC
*
2054822 TGAGCGCCCGTTC-CGCTCGTTT-GTGGGTTGA-TTAGGCATAGGCCGGAGTTCATTCC-ATGTC
124 TGAGCGCCCG--CACGCTCGTTTCGTGGGTTGACTTAGGCATA---CAGAGTTCATTCCTA-GTC
* * * * *
2054883 TAACCATAACGGAGTTTCAATTCCCTGTCTAAGATCGAAC-GCAAACTGATAGGTTGCGGCAGCA
183 TAAGCA-AACGGAG-TTC-ATTCCCAGTCTAAGATCAAACTG--GAC-CA-AGGTTGCGGCAGCA
2054947 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCAT
241 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CAT
* * * * *
2055012 CACCGGAGAACCTAACCGATGGCATTGGGGTTCCGATGATCGGGGGGGTC-GGGGGGTGTGCTCA
295 CACCGGAGAACCTGACCGACGGCATTAGGGTTCCGATGATC-GGGGGGCCGGGGGGGTGTGCGCA
* * * * *
2055076 CATGATGTGCGATGGGAGTTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTG
359 CATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
2055141 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
424 AGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
2055206 GTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATATTGTACACTTC-ACGTTTTTTGCTG
489 GTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATATTGTACACTTCGA-GTTTTTAGCTG
* * ***
2055270 AATTTTTTTGTGCATGCCAATAAAAATACAGGGATCGCATCTACTAAGTTTGGGGCCAAAAATCC
553 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCC
* * *
2055335 TTTCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
618 TTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
2055400 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
683 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
2055465 AAAGATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAAACCACCTACCCCCCTATCGATCC
748 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * **
2055530 ACCGCTTGCGCATCCCGTCTCTCCGGCCAGCGTAGTGCCTGCCCGCCCGCTCGCTTCGTCTGTTG
813 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CTCTTTTCGTCTGTTG
2055595 GCTTAG
877 GCTTAG
* * *
2055601 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGTAGCAGGATCG-AC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAGATCGCA-
*
2055665 AGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGCTGAGCG
65 AGCACACAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGCTGAGCG
* * *
2055730 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTGAGCAAACGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCAAACGGA
* * * *
2055795 GTTCATTCCCAATCTAAGCTCAAA-TCGGACCGCAGGTTGCGGTAGCACATGCTGGGCTCGGGCA
195 GTTCATTCCCAGTCTAAGATCAAACT-GGACC-AAGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
2055859 TGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGTAGAACCTGACCGATGGCATTGG
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTAG
*
2055924 GGTTCCGATGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
323 GGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
2055989 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTG
388 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTG
*
2056054 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATA
453 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATA
2056119 GTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
518 GTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
2056184 AGGATCATGTCTACAAAGTTTGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCCGAACC
583 AGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACC
* *
2056249 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAA
648 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * * *
2056314 GGCTAAAGGGCCCATTGCATGAATTTACAAGCCATAAAAATGGCATTCGG-ATGCAGAAATATGA
713 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGCACGTAGAAATATGA
* *
2056378 AGATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCG
777 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
2056443 GCGTAGTGCCCGCCCGCCCAT-TTTTCGTCTGTTGCCTTAG
842 GCGTAGTGCCCGCCCGCCCCTCTTTTCGTCTGTTGGCTTAG
* ** * * ** *
2056483 ACATACGGAGTTCATTCTTAGTCTAAGATCGGACCAGGCTGAGGGTTGTGGTAATAGGATCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAGATC-GCA
*
2056548 AG-ACACAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGTTGAGCG
65 AGCACACAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGCTGAGCG
* * * * *
2056612 CCCGCACGCTCATTTCGTTGATTGACTTAGGCATACAGAGTTCATTCCTAGTCTGAGCAAACGAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCAAACGGA
*
2056677 GTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
195 GTTCATTCCCAGTCTAAGATCAAACTGGACCAA-GGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
2056742 GTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCACCGTAGAACCTGACCGACGGCATTAGG
259 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTAGG
* * *
2056807 GTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGC
324 GTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
* * **
2056872 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGTGATTGA
389 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGA
2056937 GATTTTACAGG
454 GATTTTACAGG
2056948 GATCACGTCT
Statistics
Matches: 2001, Mismatches: 196, Indels: 137
0.86 0.08 0.06
Matches are distributed among these distances:
881 1 0.00
882 440 0.22
883 11 0.01
884 516 0.26
885 3 0.00
888 1 0.00
892 2 0.00
895 59 0.03
896 2 0.00
897 16 0.01
898 4 0.00
899 7 0.00
900 20 0.01
901 10 0.00
902 21 0.01
903 13 0.01
904 30 0.01
905 19 0.01
906 64 0.03
907 44 0.02
908 21 0.01
909 33 0.02
910 13 0.01
911 18 0.01
912 11 0.01
913 23 0.01
914 15 0.01
915 3 0.00
916 17 0.01
917 58 0.03
918 488 0.24
919 9 0.00
920 1 0.00
921 4 0.00
925 1 0.00
929 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAGATCGCAA
GCACACAGAGGGGGACCCGATCGATCCCCGACTTGAGCATCCCACCCCTCTGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCAAACGGAG
TTCATTCCCAGTCTAAGATCAAACTGGACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTAGGGT
TCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTC
ACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCCCTCTTTTCGTCTGTTGGCTTAG
Found at i:2057442 original size:26 final size:26
Alignment explanation
Indices: 2057413--2057465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2057403 ATTGACTTAG
2057413 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
2057439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
2057465 G
1 G
2057466 ATTGAACTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:2058787 original size:882 final size:880
Alignment explanation
Indices: 2056942--2062572 Score: 4453
Period size: 882 Copynumber: 6.4 Consensus size: 880
2056932 ATTGAGATTT
* * * *
2056942 TACAGGGATCACGTCTACCAGGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* * * * *
2057007 TACCGCAAAACGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
2057072 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ATAGAAAT
131 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGA-AGAAAT
*
2057136 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTG
195 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
2057201 GCCAGCGTAGTGCCCGCCTGCCCGTCCGCCTACTCGTTTCATCGATTGGCTTAGGCATACAGAGT
260 GCCGGCGTAGTG-CCGCC-GCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * *
2057266 TCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGCAGCAACAGGATCGACAGTACCCAGAGG
319 TCATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTACACAGAGG
* * * * * * *
2057331 GGGACCCGGCCGATCCCCGGCTTGTGCATCCGCCCCTCAGGCCTGCTAAACGCCCGCATGCTCGT
383 GGGA-CCGGCCGATCCCTGGCTTGTGCATCCCCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGT
* * * *
2057396 TTCGTGGATTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
447 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT-AGCAAATGGAGTTCATTCCCA-T
* * * * * * *
2057461 CTAAGATTGAACTGTACCGAGGGTTGTGGTAGCACGTGCTGGGCTCAGGCATGTGCTGGTGCAGC
510 CTAAGATCGAA-TGGA-CGAGGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
2057526 ATTTTTTTTTGTCGGGGCACCATCATCGGAGCATCGCCGGAAAACCTGACCGACGATATTGGGGT
573 ATTTTTCTTCGTCGGGGCACCATC-T----G-AT---CGTAGAACCTGACCGACG-TATTGGGG-
2057591 TTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
627 TTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
*
2057656 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTAAG
692 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAG
* * *
2057721 ATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGT
757 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
2057786 CACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCGACAAAAA
822 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
2057845 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTGAAAAAATCCCA
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* * * *
2057910 AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * **
2057975 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGCAGGGATA
131 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATA
*
2058040 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
*
2058105 CCGGCGTAGTG-C-CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGTCATACGGAGTTCATTGC
261 CCGGCGTAGTGCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-C
* * * * *
2058168 CAGTCTATGATCGGATCTGACCAAGGGTTGCAGCAGTAGGATCGGCAGTACACAGAGGGGGACCG
325 CAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTACACAGAGGGGGACCG
* * * * *
2058233 ACCGATCCCTGGCTTGGGCATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGG
390 GCCGATCCCTGGCTTGTGCATCCC-CCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGG
*
2058298 GTTAACTTAGGCATACAGAGTTCATTCCCAGTCTGAGCAAATGGAGTTCATTCCCAATCTAAGAT
454 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCT-AGCAAATGGAGTTCATTCCC-ATCTAAGAT
* *
2058363 CGAATTGGATCGAGGTTTCTGGTAGCACATGCTGGGATCGGGCATGTGCTGGTGCCGTATTTTTC
517 CGAA-TGGA-CGAGGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
** * **
2058428 TTCACCGGGGCACCAT-T-ATCGTAGAACCTGACCGACAGCATTGGGGTTCAAACGATCGGGGGG
580 TTCGTCGGGGCACCATCTGATCGTAGAACCTGACCGAC-GTATTGGGGTTC-GGCGATCGGGGGG
* * *
2058491 GCC-AGGGGGTGTGCGCACAGGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGG-CCCCT
643 GCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
2058554 ATCCCTCGTCAAACCTCGAGAACCCACACCCCCTTAAAGAGCAATTGAGCTTTTACAGGTTTGCT
708 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCT
* * *
2058619 ACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
773 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
2058684 CTTCGAGTTTTTAGTTGAAGTTTTTTGTGCATGCCAACAAAAA
838 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
2058727 TACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* * *
2058792 AACCGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
2058857 TGAAGGCTT-AAGAGACCATTCTATGAATTTACAAGCCTTGAAAATGGCATTGGCATGAAGAAAT
131 TGAAGGCTTAAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAAT
*
2058921 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
195 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
2058986 GCTGACGTAGTGCTCGCCCGCCCGCCCGCTCGTCCGCTCGCCCGCTCGTTTCATCAGTTGGCTTA
260 GCCGGCGTA--G-T---------G-CCGC-CG--C-C-CGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * * *
2059051 GGCATACGGAGTTCATTTCCATTCTAAGTTCGGACCGGACTGAGGGTTGC-GATAGCAGGATCAG
307 GGCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCAGGATCGG
* * * * * * * *
2059115 CAGCACACAGAGGGGGACTCGGTCGAT-CCTCGACTTGTGCTTCTCGCCCTCTAGCCGACTGAGC
370 CAGTACACAGAGGGGGAC-CGGCCGATCCCT-GGCTTGTGCATCCCCCCCTCTGGCCGGCTGAGC
* * * * * *
2059179 ACTCACATGCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTA--AGATCG-
433 ACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGCAAATGGA
* * * * *
2059241 G---A----C--C-AA-A-C----CGA-G-GGTTGC-AGTAGCACATACTGGGCTAGGGCATGTG
498 GTTCATTCCCATCTAAGATCGAATGGACGAGGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTG
* * * *
2059287 CTGATGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACATGACCGGCG
563 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-T----G-ATCGT---AGAACCTGACCGAC-
* * **
2059352 GTATTCGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGGACATGATGTGCAATGGGTGCTG
618 GTATTGGGGTTC-GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
* * * * *
2059417 GTACTTGGCCCTTATACTGGCCCCCAATCCCTCATCAAACCTAGAGAACTCACACACCTTTAAAG
682 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
2059482 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACAGTTTT
747 AGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
2059547 TTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
812 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
2059612 AAAA
877 AAAA
* * ** ** * *
2059616 TACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATTGTTGTGAAAAAATTTTAAAAAATTCAA
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* *
2059681 AACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** ** * * * **** ** *
2059746 TGAAGGCTTAAGGGACCCTATCAATCCA-TGACTAGTGCAT-CCCGTCTC-TCTGGC-TG--G--
131 TGAAGGCTTAAAGGACCAT-TGTATGAATTTACAAG-CCATAAAAATGGCAT-TGGCACGAAGAA
* * ** * * * *** * *
2059803 CT-T----A-GTGCCCACCCGTCCGCCTGCC-CGCTCGTTTCG-TCGGTTGGCTTAG-GCATACG
193 ATATGAAGATGTGCCTAAAC--CCACCTACCAC-C-C-TATCGATC-CACGGCTT-GCGCATCCC
** * * ** * * ** * * *
2059859 GAGT-TCAT-TCCTAGTC-TAAGAT--CG-AACCAGACCG-AGGGTT--GCGG-TAGC--AGG-A
251 GTCTCTC-TGGCC--GGCGT-AG-TGCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * *** * *
2059911 T-CGGCAG--CA-T---GT-TGAGA-GGGACCCAG-CTGA-TCCT-C-GTCTTGCA-CATC--C-
311 TACGG-AGTTCATTCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCAG-C-AGCAGGATCGGCA
* **** * * ** ** * * ** * *
2059959 -TGC-CA-CTCTGG-CCGGCTGAGCGACC--GCACGCT-CAT---TTCAT-GGGTTGACTTAGGC
372 GTACACAGAGGGGGACCGGCCGATC--CCTGGCTTG-TGCATCCCCCCCTCTGGCCGGCTGA-GC
** * * *** * * * *
2060013 A--TACATTGTTC-ATTC-CCAGTCGA---A-GCATACGGAGTTCATTCCCAGTC-A-AAGAACG
433 ACCCGCA-TGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGCA-AATG
* * ** * * ** *
2060068 GACCAGATCAAGGGTT-GCGGC--AG--C-ACAT-G-CTAGG-CTC-GG--GCATGTGGTGGTGC
496 G---AGTTC-A---TTCCCATCTAAGATCGA-ATGGACGAGGTTTCTGGTAGCACATGCTGG-GC
* * * **** * * * * * * *
2060121 T---GTATTTTTCTTCACCAGG-GCAC-CATCACCGGAGCATCGCCAGAGAACCTGACCGGTG-G
552 TCGGGCA-TGTGC-T-----GGTGC-CGCAT----TTTTCTTCGTCGGGGCACC--ATC--TGAT
* **** * * * * **** *
2060180 CGTTGGGGTTCCAGCGATCG-A--GGGGGTCGG-G---GGGGTGTGCTC-ACATGATGTGCG---
601 CGTAGAACCT-GACCGA-CGTATTGGGGTTCGGCGATCGGGG-GGGC-CGGGGGGGTGTGCGCAC
* * ** ** ** * *** *
2060234 ATG-GGTGCTGGTACTTGGCCCTTATA-TTGGCCC-CCTA-T--CCCTC-ATCAAACCTC--A--
662 ATGATGTG-T-G-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
2060288 ---AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAA
723 TCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
2060350 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTACGAGTTTTTAGC
788 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
2060415 TTAATTTTTTTGTGCATGCCAAAAAAAA
853 TGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
2060443 TACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCATTTCGAAAAAATTTTAAAAAATCTCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
** * * *
2060508 AACCAAAAAAAGTTTTAAAAATCATAAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
2060573 TGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAATAT--CATTGGCAC-ATAGAAA
131 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACGA-AGAAA
* * * *
2060635 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGGCTTACGTATCCCGTCTCTCT
194 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
2060700 GGCCAGCGTAGTG-C-CCGCCCACCCACTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATT
259 GGCCGGCGTAGTGCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * * *
2060763 CCTAGTCCAAGATTGGACCAGACCAAGGGTTGCGGCAGGAGGATTGGCAGCACGCAGAAGGGGAC
324 CC-AGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTACACAGAGGGGGA-
* * * * * *
2060828 CCGACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCC-GATCGAGCGCCTGCATGCTCGTTTC
387 CCGGCCGATCCCTGGCTTGTGCATCCC-CCCCTCTGGCCGGCT-GAGCACCCGCATGCTCGTTTC
* * *
2060892 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA--AGATCG-G---A----C--C--AG
450 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGCAAATGGAGTTCATTCCCATCTAAG
* ** * *
2060943 A-C-------CGAGGGTTGGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC
515 ATCGAATGGACGAGGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * ** *
2061000 TTCGTCGGGGCACCATC-GCT-GGAGAACCTGACCGGCGGCGTTGGGGTTTCGACGATCGGGGGG
580 TTCGTCGGGGCACCATCTGATCGTAGAACCTGACCGAC-GTATTGGGG-TTCGGCGATCGGGGGG
* ** *
2061063 GCCGTGAGGGGTGTGTTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
643 GCCG-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2061128 TATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
707 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
* *
2061193 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAG
772 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
2061258 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
837 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * ** *
2061302 TAGAAGGATCACGTCTACTACGATTGGGGCCAAAACTCATTTCAAAAAAAATTTT-AAAAATCCT
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCC
* * * * * * * * *
2061366 GAACCGAAAAAAGTATCAAAAATCGTGAAAAACAGAAAACGTGTCATCTTGCCATTAAACTTCAC
65 AAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
2061431 GTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAATAT--CATTGGCGC-ATAGAA
130 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACGA-AGAA
* * *
2061493 ATATGAGGATGCT-CCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTTT
193 ATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
2061557 CTGGCCGACGTAGTGCCTACCCGCTCGTCCGCCTGCCCGTTCGTTTCGTGGGTTGGCTTAGGCGT
257 CTGGCCGGCGTAGTG-----CCGC-CG--C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* ** * *
2061622 ACGGAGTTCATTCCTAGTCTAAGATGGGACCAGACCGAGGGTTGTGGCAGCAGGATCAGCAGCAC
312 ACGGAGTTCATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTAC
* * * ** * *
2061687 GCAGAAGGGGACCCGGCCGATCCCCGGCTTGCCCATCCCACCCCTTTGGCCGGCTGAGCGCCCGC
376 ACAGAGGGGGA-CCGGCCGATCCCTGGCTTGTGCATCCC-CCCCTCTGGCCGGCTGAGCACCCGC
* * ** *
2061752 ACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
439 ATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT-AGCAAATGGAGTTCA
** * *
2061817 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-GGTAGCACATGCTGGGCTCAGGCATGTGC
503 TTCCCA-TCTAAGATC-GAATGGAC-GA-GGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTGC
** * *
2061881 TGGTGCCATATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCAGAGAACCTGATCGACG-A
564 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-T----G-ATCG--TAGAACCTGACCGACGTA
* * * *
2061945 CGTTGGGGTTCCGACGATCAGGGGGGG-CGGGGGGGTGTGCTCACTTGATGTGCGATGGGTGCTG
621 --TTGGGGTT-CGGCGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
*
2062009 GTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
682 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
2062074 AGCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAAGTTTTTGAAATGGGGACACTTTT
747 AGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
2062139 TTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATACCAACA
812 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
2062204 AAAA
877 AAAA
* * * * * *
2062208 TACAAGGATGACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAAATTTAAAAAATCTCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
* * *
2062273 AATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
2062338 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ATAGAAAT
131 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGA-AGAAAT
* * * * *
2062402 ATGAAGATGTGTCTAAACCCACCTACCACACTATCTATCCATGACTTGCGCATCCCGTCTCTCTG
195 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * * * *
2062467 GCTGGCGTAGTGCCCAGCCATCCGCCCGCTCGTGTCGTCGGCTGACTTAGGCATACGGAGTTCAT
260 GCCGGCGTAGTG-CC-GCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
2062532 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCA
323 T-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCA
2062573 CATGCTGGCC
Statistics
Matches: 3781, Mismatches: 657, Indels: 584
0.75 0.13 0.12
Matches are distributed among these distances:
826 12 0.00
827 299 0.08
828 4 0.00
829 1 0.00
831 6 0.00
832 17 0.00
833 31 0.01
834 17 0.00
835 15 0.00
836 9 0.00
837 21 0.01
838 10 0.00
839 22 0.01
840 24 0.01
841 8 0.00
842 10 0.00
843 9 0.00
844 25 0.01
845 11 0.00
846 28 0.01
847 31 0.01
848 28 0.01
849 14 0.00
850 9 0.00
851 9 0.00
852 30 0.01
853 4 0.00
854 9 0.00
855 7 0.00
856 8 0.00
857 3 0.00
858 13 0.00
859 376 0.10
860 16 0.00
862 8 0.00
863 11 0.00
864 8 0.00
865 6 0.00
866 1 0.00
867 2 0.00
868 3 0.00
869 27 0.01
870 3 0.00
871 183 0.05
872 3 0.00
874 4 0.00
875 1 0.00
876 52 0.01
877 5 0.00
878 10 0.00
879 2 0.00
880 10 0.00
881 11 0.00
882 427 0.11
883 60 0.02
884 43 0.01
885 4 0.00
886 2 0.00
887 43 0.01
888 53 0.01
889 298 0.08
890 9 0.00
891 1 0.00
893 1 0.00
894 24 0.01
895 242 0.06
896 7 0.00
897 61 0.02
898 6 0.00
899 78 0.02
900 7 0.00
901 4 0.00
902 157 0.04
903 269 0.07
904 3 0.00
905 14 0.00
906 365 0.10
907 110 0.03
908 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (880 bp):
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
AGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGTACACAGAGGGGGACCGG
CCGATCCCTGGCTTGTGCATCCCCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTAGCAAATGGAGTTCATTCCCATCTAAGATCGAA
TGGACGAGGTTTCTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCTGATCGTAGAACCTGACCGACGTATTGGGGTTCGGCGATCGGGGGGGCCGGGGG
GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
Found at i:2059013 original size:8 final size:8
Alignment explanation
Indices: 2058997--2059033 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
2058987 CTGACGTAGT
2058997 GCTCGCCC
1 GCTCGCCC
*
2059005 GCCCGCCC
1 GCTCGCCC
*
2059013 GCTCGTCC
1 GCTCGCCC
2059021 GCTCGCCC
1 GCTCGCCC
2059029 GCTCG
1 GCTCG
2059034 TTTCATCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.59, G:0.27, T:0.14
Consensus pattern (8 bp):
GCTCGCCC
Found at i:2061813 original size:26 final size:26
Alignment explanation
Indices: 2061777--2061829 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2061767 GTTGACTTAG
2061777 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2061803 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2061829 G
1 G
2061830 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2063209 original size:8 final size:8
Alignment explanation
Indices: 2063196--2063228 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
2063186 GTAGTGCCCC
2063196 CCCGCCTG
1 CCCGCCTG
2063204 CCCGCCTG
1 CCCGCCTG
2063212 CCCGCCTG
1 CCCGCCTG
2063220 CCCGCCTG
1 CCCGCCTG
2063228 C
1 C
2063229 TCCTTTCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.64, G:0.24, T:0.12
Consensus pattern (8 bp):
CCCGCCTG
Found at i:2063759 original size:722 final size:726
Alignment explanation
Indices: 2062512--2063921 Score: 2091
Period size: 722 Copynumber: 1.9 Consensus size: 726
2062502 CGTCGGCTGA
* * *
2062512 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGTAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATG
* * *
2062577 CTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCAGCATCGCCGGAGCATCGCC
66 CTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGAGGCACCAT--CC-G-G-ATCG-C
* * * * *
2062642 TGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCTGGGGGGGTGTGCGCACATGA
125 -GAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGCTCGGGGGGTATGCGCACATGA
*
2062707 TGTGCGATGGATGCTGGTACTTGGCCCTCATATTGGCCCCCTATTCCTCACCAAAACTCGAGAAC
189 TGTGCGATGGATGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCACCAAAACTCGAGAAC
*
2062772 TCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTACTGCCAGCAGCCATGAAAGTGTCTA
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGCAGCCATGAAAGTGTCTA
*
2062837 AAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATGTTT
319 AAATGGGGACACTTTTTCCAAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATGTTT
* * *
2062902 TTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAATTCCTTCTGAA
384 TTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCATCCGAA
* *
2062967 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAGAAGTCAT
449 AAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAGAAGTCAT
*
2063032 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2063097 GCATTGGCATGCAGAAATATGAACATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAACATGTGCCGAAACCCACCTACCACCCTATCGATCCACGACTT
* * **
2063162 GCGCTTTTCGTCTCTCTAGCCGACGTAGTGCCCCCCCGCCTGCCCGCCTGCCCGCCTGCCCGCCT
644 ACGCATCCCGTCTCTCTAGCCGACGTAGTGCCCCCCCGCCTGCCCGCCTGCCCGCCTGCCCGCCT
2063227 GCTCCTTTCATCGGTTGG
709 GCTCCTTTCATCGGTTGG
* * * *
2063245 CTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCGCG-TCAGACCGAGGGTTGCGGCAGCACAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGAGGGTTGCAGCAGCACAT
* * * *
2063309 GCTGGGCTCGGGCATGTGCTTGTGCTACATTTTTCTTCGCCGAGGCACCAT-C-G-TCG-GAGAA
65 GCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGAGGCACCATCCGGATCGCGAGAA
* *
2063370 CCTGACCGGCGGCATTGGGGTTCCGACAATTGGGGGGGC-CGGGGGGTATGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACAA-TCGGGGGGCTCGGGGGGTATGCGCACATGATGTGC
* * * * * * *
2063434 GATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTTACA
194 GATGGATGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCACCAAAACTCGAGAACTCACA
* * * *
2063499 CCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGCAGCCATGAAAGTGTCTAAAATG
* *
2063564 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTCCAAATGGTAACAAAATCTTGTACACTTCAG-TTTTTAGCTGAATGTTTTTGT
* *
2063629 GCATG-CCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
388 GCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCATCCGAAAAA
* * * **
2063693 ATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAGATAGAAACG-AGTTGTCT
452 ATTTTAAAAAATCCT-AAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAGAAGTCATCT
*
2063756 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2063821 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTAC
581 ATTGGCATGCAGAAATATGAACATGTGCCGAAACCCACCTACCACCCTATCGATCCACGACTTAC
* * *
2063886 GCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCG
646 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCCCCCG
2063922 TCCGTCCACT
Statistics
Matches: 610, Mismatches: 62, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
722 376 0.62
723 129 0.21
725 3 0.00
727 1 0.00
730 1 0.00
733 99 0.16
734 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (726 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATG
CTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGAGGCACCATCCGGATCGCGAGAAC
CTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGCTCGGGGGGTATGCGCACATGATGTGCGA
TGGATGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCACCAAAACTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGCAGCCATGAAAGTGTCTAAAATGGG
GACACTTTTTCCAAATGGTAACAAAATCTTGTACACTTCAGTTTTTAGCTGAATGTTTTTGTGCA
TGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCATCCGAAAAAATTT
TAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAAGAAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAACATGTGCCGAAACCCACCTACCACCCTATCGATCCACGACTTACGCATC
CCGTCTCTCTAGCCGACGTAGTGCCCCCCCGCCTGCCCGCCTGCCCGCCTGCCCGCCTGCTCCTT
TCATCGGTTGG
Found at i:2064135 original size:26 final size:26
Alignment explanation
Indices: 2064099--2064150 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2064089 TTTAACTTAG
*
2064099 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
2064125 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
2064151 AATCATATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:2065920 original size:26 final size:26
Alignment explanation
Indices: 2065884--2065936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2065874 GTTGACTTAG
2065884 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2065910 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2065936 G
1 G
2065937 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2067717 original size:26 final size:26
Alignment explanation
Indices: 2067681--2067732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2067671 TTGACTTAGC
2067681 CATACGGAGTTCATT-CTCAGTCTAAG
1 CATACGGAGTTCATTCCT-AGTCTAAG
2067707 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
2067733 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:2068610 original size:26 final size:26
Alignment explanation
Indices: 2068580--2068639 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
2068570 GTTGACTTAG
*
2068580 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2068606 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2068632 G-AT-CGGAG
1 GCATACGGAG
2068640 CAGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2068858 original size:900 final size:900
Alignment explanation
Indices: 2063250--2069509 Score: 8101
Period size: 904 Copynumber: 7.0 Consensus size: 900
2063240 GTTGGCTTAG
* * * *
2063250 GCATATGGAGTTCATTTCCAGTCTAAGATCGCG-TCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGAGGGTTGCGACAGCACATGCTGG
* ** * *
2063314 GCTCGGGCATGTGCTTGTGCTACATTTTTCTTCGCCGAGG------CA-C----CATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
** * * * *
2063368 AACCTGACCGGCGGCATTGGGGTTCCGACAATTGGGGGGGCC-GGGGGGTATGCGCACATGATGT
130 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
2063432 GCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTTA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2063497 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2063562 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTT
* * *
2063626 TGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
2063691 AAATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAGATAG-AAACGAGTTGT
454 AAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
2063754 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2063819 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTT
583 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
2063884 ACGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGTCCACTCGTTTCTTCAGTTGGCT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* *
2063949 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT---ACAGC---A---
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCG
* ** * * *
2064005 GCA-CA--CAGAGAGGGACCCGACCGATCCTCGGCTTGCGCATGTCACCCCTCTGGTCGACTGAG
778 GCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *** * *
2064067 CACCTGCACGCTCGTTTCTTTTTTTAACTTAGGCATACGGAGTTCATTACCAGTCTAA
843 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *** *
2064125 GCATACAGAGTTCATTCCCAGTCTAAAATCATATTGGACCAAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* * ** * *
2064189 GCTGGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
2064254 AACCTGACCGATGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGTGTGTGTGCATATGATGT
130 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
2064318 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2064383 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2064448 TGGGGACACTTTGTTCAAATGGCCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * **
2064513 GTGCATGCCAACAAAAATAGGAGGATCACGTCTACCAAGTTTTGGGTCAAAACTCCTTCTAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
2064578 AATTTGAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
455 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* ** * *
2064642 TTGGCATGAAACTTCACGTGAAGGCTCCACGGACCATTGTATGAATTTACAAGCCATAAAAATGA
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2064707 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
2064772 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGTCCGCCCGCCCGCATGCTCGTTTCGTTGGTTA
649 CGCATCCCGTCTCTCTGGCCGACGTAGTG-C---CCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
** * * * * * *
2064837 GCTTAGGCATACAAAGTTCATTACCAGTCTAAGATTAGATCAGG-CCGAGGATTG-TAGTAGCAG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGA-CAGCAG
* * * *
2064900 GATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCTGCCCCTCTAGCCGG
773 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
2064965 CTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2065028 G-AT-C---G---A-----A--C------C-G----GACCGAGGTTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
2065067 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
2065132 ACCTGACTGGTGGCATTAGGGTTTCGGC-ACTCGGAGGGGTCGGGGGGCGGGTGTGCGCACATGA
131 ACCTGACCGATGGCATTGGGGTTCCGGCGA-TCGG-GGGGGC-CGGGG-GGGTGTGCGCACATGA
* * * *
2065196 TGTGTGATGGGTGCTGCTACTTGGCCTTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
2065261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTTTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
2065326 AATTGGGGACAATTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
2065391 TTTGTGCATGCAAAAAAAAAATACAAGAATCACGACTACCAAGTTTGGGGACAAAACTCCTTTCG
387 TTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
2065456 AATAAATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
451 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
2065521 GTCTAGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
2065586 TGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGC
581 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
2065651 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCCTGTCCGCCCGCTAGTTTTATCGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCATCGG
* * * ** * * * *
2065716 TTGGCATAGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGCAACA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA
* * * * * * * * *
2065781 GGATCGGCAACTCACAAAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCG
772 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
2065846 GCTGAGCGCCCGCGCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2065910 GCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCAGA-AGCAAATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GACAGCACATGCTGG
**
2065974 GCTCGGGCATGTGCTGGTGCCGTTTTTTTCTTCGTCGGGG------CA-C----CATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
2066028 AACCTGACCGGTGGCATTGGTGTTCCGGTGATC-GGGGGGCCCGGGGGGAGTGCGCACATGATGT
130 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
2066092 GTGATGGGTGCTGGTATTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAGCCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2066157 CAACCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2066222 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGCTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
2066287 ATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
2066352 AATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
2066417 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGT
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2066482 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
585 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
2066547 ACA-CCCGTCTCTCTGGCCGACGTGGTGCCCGCGCGCCCGCCCTCCCTCTTGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC-CGCTC--GTTTCATCGGTTGG
** * * * * *
2066611 CTTAGGCATGTGGAGTTTATTTCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGAT
** * * ** * *
2066676 CGATAGCTCACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
776 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
2066741 AGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTC-AA
841 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2066800 TCATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
2066865 CTCGGGGATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
*
2066930 ACCTGACCGATGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTGGTGTGCGCACATGATG
131 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATG
* * * * *
2066995 TGCGCTGGGTGCTGGAACTTGGCCCTTATTTTGGCCCTCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2067060 ACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTCAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2067125 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
2067190 TGTGCATGCAAATAAAAATACAAGGATCACGTCCACCAAATTTGGGGGCTAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
2067255 AAATTTTAAAAAATCCCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2067320 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2067385 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCAATCCACGGCTTG
584 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
2067450 CGCATCCCGTCTCTATGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCCTACTCGTTTCGTCGATT
649 CGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCATCGGTT
* ** *
2067514 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGAAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGG
* * * * *
2067579 ATCGGTAGCACGCAGAGGGGGACCCGACTGATCCCCGGTTTACGCATCCCGCCCCTCTGGCCGGC
774 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
2067644 TGAGCGCCCGCGCGCTCATTTTGTGGGTTGACTTAGCCATACGGAGTTCATTCTCAGTCTAA
839 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
2067706 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
2067771 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCACCGGAGCATC-ACTAAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAG
** * *
2067835 AACCTGACCGACAGCATTGGGGTTCCGGCGATCGGGGGGACCGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
2067900 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCACTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** * *
2067965 CACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCTGTTAAATTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2068030 TGGGGATACTTTTTTCGAATGGTCACAAAATCTTGTACA-GTCTGAGTTTTTAGCTGAATTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTT
* * * *
2068094 TGTGCATACCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
2068159 AAATTTTAAAAAATCCTGAACCTCAAAAAGTGTCAAAAATCATGAAAAATACAAAACGGGTCGTC
454 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2068224 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2068289 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTG
584 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
2068354 CGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCTCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
* * * * *
2068419 AGGCATAGGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTGTGACAGCAGGATCAG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGG
* *
2068484 CAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
779 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
2068549 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2068606 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
2068671 CTCGAGCATGTGCTGGTGCCGCATTATTCTTCATTGGGGCACCATCACCAGAGCATCGCCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
** ** * * *
2068736 ACCTGACCGACAGCATTGGGGTTCCAACGATCGAGGGGGCCGGGGGGGTGTACGCACATAATGTG
131 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
2068801 CGATGGGTGCTGGTACTCGGCCCTTATATTGGCACCTTATCCCTTATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2068866 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTCTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2068931 GGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2068996 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGG-CAAAACTCCTTTCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2069060 ATTTTAAAAAATCTTGAACCGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTAGTCTT
456 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2069125 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
2069190 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
2069255 CATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTCATCGATCGGC
651 CATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * *
2069320 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCATACCGGACCAAGGGTTGC-AGCAGCAAGAT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCAGGAT
** * * *
2069384 CGGCAGCACATAGAGGGGGACCCTACCGATCCTTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTG
776 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ** * *
2069449 AGCGCCTGTC-CACTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAA
841 AGCGCCCG-CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
2069509 G
1 G
2069510 ATCAGATCAA
Statistics
Matches: 4708, Mismatches: 566, Indels: 194
0.86 0.10 0.04
Matches are distributed among these distances:
875 86 0.02
876 1 0.00
877 109 0.02
878 8 0.00
879 1 0.00
880 3 0.00
881 212 0.05
882 433 0.09
883 3 0.00
886 351 0.07
887 166 0.04
888 5 0.00
889 4 0.00
890 95 0.02
891 261 0.06
892 235 0.05
893 205 0.04
894 6 0.00
895 7 0.00
896 2 0.00
897 40 0.01
898 2 0.00
899 218 0.05
900 571 0.12
901 49 0.01
902 13 0.00
903 299 0.06
904 900 0.19
905 212 0.05
906 148 0.03
907 3 0.00
908 59 0.01
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2069583 original size:159 final size:159
Alignment explanation
Indices: 2069317--2069673 Score: 394
Period size: 159 Copynumber: 2.2 Consensus size: 159
2069307 TTCATCGATC
* **
2069317 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCATACCGGACCAAGGGTTGCAGCAGCAAG
1 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCAAG
* * * * * *
2069382 ATCGGCAGCACATAGAGGGGGACCCTACCGATCCTTGGCTTGCGCATCCCGCCCCTCTAGCCGGC
66 ATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTAGCCGGC
*
2069447 TGAGCGC-CTGTC-CACTCATTTCATCAGTT
131 TGACCGCTC-G-CACACTCATTTCATCAGTT
* * * * ** * * *
2069476 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGGAGTAGG
1 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCAAG
* * *** * *
2069541 ATCGACAGTACGCAGAGGGGGACCCGGTTGATCCTCGACTTGCGCATCCCACCCCTCTGGCTGGC
66 ATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTAGCCGGC
* * * **
2069606 TGACCGCTCGCACGCTCGTTTCGTGGGTT
131 TGACCGCTCGCACACTCATTTCATCAGTT
*
2069635 GACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
1 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
2069674 TCTTGACCGA
Statistics
Matches: 162, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 1 0.01
159 160 0.99
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCAAG
ATCGACAGCACACAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTAGCCGGC
TGACCGCTCGCACACTCATTTCATCAGTT
Found at i:2071444 original size:897 final size:892
Alignment explanation
Indices: 2069717--2072513 Score: 3848
Period size: 897 Copynumber: 3.1 Consensus size: 892
2069707 CTCAGGCATG
* * ** *
2069717 AAAATACAATGA-CACATCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAAAATTTTAAAAAGT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT
* * * * *
2069781 CCAAAACCGAAAAAAATTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTT
65 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTT
*
2069846 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
130 CACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
*
2069911 AATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCCGTCTC
195 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCT-
* * *
2069976 CTCTGGCCCGTCATAGT----G--GCCCG-CCGCATCGTTTCGTCGGTTGGCATAGGAATACGGA
258 CTCTGG-CCGT-GTAGTGCCCGCCGCCCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * ** * * *
2070034 CATTCATTCCCTGGCTAAGATCCGACCGGA-GA-GG-T-TGGCAGCAGCCTTGGCGGCATGCAAA
320 -GTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGA
* *
2070095 GGGGGAACCGACCGTTCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCT
384 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCT
* * *
2070160 CGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCC
449 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * * *
2070225 AGTCTCAGATCGGACCAGACCGAGGGTTGTGGTCAGCACATGCTGGGCTCGGGCATGTGCTAGTG
514 AGTCTAACATCGGATCAGACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
2070290 CCGCATTTTTCGTCACCAAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTG
578 CCGTATTTTTCTTCACC-GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTG
* * *
2070355 GGGTTCCGATGATCGGGGGGGCGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
642 GGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
2070420 CCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAACATTTA
707 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2070485 AGATTTTACAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
772 AGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
2070550 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGGATGCCAACA
837 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAA
*
2070606 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAGAA-TTTAAAAAA
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA-AATTTTAAAAAA
* ** *
2070670 TCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACT
64 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACT
** *
2070735 TCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
129 TCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
* *
2070799 AAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
194 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
2070864 TCTGGCCGATGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGT
259 TCTGGCCG-TGTAGTGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
2070929 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGTAGGATTGGCAACACGCAGAGG
322 TCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGG
* * * * * *
2070994 GGGACCCGACCGATCCCCGACATGCACATCCGACCCCTTTGGCAGGCTGAGCGCTCGCACGCTCG
386 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCTCG
* *
2071059 TTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATTCAGAGTTCATTCCCAG
451 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* *
2071124 TCTAACATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGTATGTGCTGGTGCCG
516 TCTAACATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
*
2071189 TATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGG
581 TATTTTTCTTCACC-GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG
* *
2071254 TTCCGGTGATCGAGGGGGCCGGGGGGTGTGCGCACTTGATGTGCGTTGGGTGCTGGTACTTGGCC
645 TTCCGGTGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
2071319 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
709 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
2071384 ATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGAT
774 ATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
2071449 CGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGGCAAAA
839 CACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTTGCATGCCAAAA
* *
2071504 AAAATATAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT
* * * * *
2071569 CTCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAAT-TGAAAACGAGTCGCCTTGCCATGAAACT
65 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAT-AAAACGAGTCGTCTTGCCATGAAACT
2071633 TCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCATGCA
129 TCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCA
* *
2071698 AAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
193 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
2071763 CTATGGCCGGCGTAGTGCCCGCCCCCCCCCATCCGCTCGTTTCGTCGATTGGCTTAGGCATATGG
258 CTCTGGCC-GTGTAGTGCCCG-CCGCCCGC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** *
2071828 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGAT-GCAGCAGGATCAGCAGCACGAA
319 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTG-TGGCAGCAGGATTGGCAGCACGCA
** * * *
2071892 GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCTCCCGCACA
382 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACG
*
2071957 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGC-AAGCATACAGAGTTCATT
447 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAAGCATACAGAGTTCATT
* ** * * ** *
2072021 CCCAGTCTAATATCGGATTGGACTGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGG
511 CCCAGTCTAACATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
2072086 TGCCGTATTTTTCTTCATCGGG-------G-C--AGCATCACCGGAGAACCTGATCGGCGGCATT
576 TGCCGTATTTTTCTTCACCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT
*
2072141 GGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
641 GGGGTTCCGGTGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * * * *
2072206 TAGCCCCTATATTGGCCCCCTATCCCCCATGAAACCTTGAGAACTCACACCACCTTAAAGAGCAT
704 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
2072271 TTGAGATTTTACAGGTTTACCGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
769 TTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
**
2072336 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATG
834 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAA
* * *
2072396 AAAATACAAGGATCATGTCTGCCAAGTTTGGGGGCAAAACTCCTTCCAAAAAATTTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAAAT
* ** ** *
2072461 CCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATGGAAAAGGAGTCGTCTT
65 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTT
2072514 CCCAGTCTTA
Statistics
Matches: 1697, Mismatches: 178, Indels: 63
0.88 0.09 0.03
Matches are distributed among these distances:
886 7 0.00
887 7 0.00
888 7 0.00
889 110 0.06
890 116 0.07
891 66 0.04
892 324 0.19
893 33 0.02
894 7 0.00
895 2 0.00
896 103 0.06
897 364 0.21
898 147 0.09
899 27 0.02
900 99 0.06
901 6 0.00
902 270 0.16
903 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATC
CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGTGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGAC
CCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCA
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
CATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
TTCTTCACCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
TGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAA
Found at i:2072720 original size:26 final size:26
Alignment explanation
Indices: 2072684--2072762 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2072674 GTTGACTTAG
* *
2072684 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2072710 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2072736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2072762 G
1 G
2072763 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2072889 original size:211 final size:211
Alignment explanation
Indices: 2072512--2072947 Score: 665
Period size: 211 Copynumber: 2.1 Consensus size: 211
2072502 AGGAGTCGTC
* * *
2072512 TTCCCAGTCTTAGGCATACGGAGTTCATTACCAGTTTAAGATCAGACCAGACCGAGGGTTGTGGT
1 TTCCCAGTC-TAAGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
* * *
2072577 AGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
65 AGTAGGATCGACAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTG
* * * * *
2072642 GCCGGCTGAGCGCCCGCCCGGTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTC
130 GCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
2072707 TAAGCATACGGAGTTCA
195 TAAGCATACGGAGTTCA
* * *
2072724 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
* * * *
2072789 GTAGGATTGGCAACACGCAGAGGGGGACTCGGCCGATCCCCAGCTTGCACATCCCGCCCCTCTGG
66 GTAGGATCGACAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGG
* **
2072854 CCAGCTGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
131 CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
*
2072919 AAGCATTCGGAGTTCA
196 AAGCATACGGAGTTCA
2072935 TTCCCAGTCTAAG
1 TTCCCAGTCTAAG
2072948 ATCGGACCAA
Statistics
Matches: 202, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
211 193 0.96
212 9 0.04
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (211 bp):
TTCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
GTAGGATCGACAACACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGG
CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCA
Found at i:2074295 original size:26 final size:26
Alignment explanation
Indices: 2074266--2074318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2074256 GTTGACTTAG
* *
2074266 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2074292 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2074318 G
1 G
2074319 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2077356 original size:884 final size:884
Alignment explanation
Indices: 2073628--2084034 Score: 11991
Period size: 884 Copynumber: 11.8 Consensus size: 884
2073618 CAAACAGAGT
* *
2073628 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2073693 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
2073758 AGTTTTTAGCAGAATTTTTAT-TGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
2073822 GGCCAAAAATCCTTT-CGAAAAAAATTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCGGG
196 GGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
2073886 AAAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
260 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
2073951 ATTTACAAGCCATAAAAATGGCATTGGCACGA-AGAAATAT-AAGATGTGCCTAAACCCACCTAC
325 ATTTACAAGCCATAAAAATGGCATTGGCAC-ATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * **
2074014 CACCCAATCGATCCACAGATTGCGCATCCCGTCTCTCTGGTAGGCGTAGTGCCCTCCTGCTCGCC
389 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-----CTGCTCGCC
* * * * *
2074079 CACCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAG
449 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
2074144 ACTG-GGGATTGTGGCAGCAGGATTGGTAGCACGCAGAAGGGGACGCGG-CCGATCCCCGGCTTG
514 ACCGAGGG-TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTG
* * * *
2074207 CTCATCCCGCCCCTCTGGCCGACTGAGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
578 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATAC
* * * ***
2074272 GGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGGTTGAGGG
642 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
2074337 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCAT
707 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * *
2074402 CGCTGGAGCATCACCGGAGAACCTGACCGGCGACATTAGGGTTCTGGCGATCAGGGGGG-CTGGG
772 --C----G--T---CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATC-GGGGGGCCGGGG
* * * *
2074466 GGTGTGCTCACATGATGTGCGAT-GG-G-T-G--C-T-GCCTTTATATTGGCCCCCCATACC
823 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2074520 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2074585 TAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** * * **
2074650 AGTTTCTAGCAAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTAAAAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
2074715 GGCCAAAAATCCTTCCGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGGTTT-GAAAATCGTG
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCGTG
** *
2074779 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGACCGTTGTATGA
260 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
***
2074844 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
325 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
2074909 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTA--G-TGCTCGCCCGCCCG
390 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCTCGCCCGCCCG
* * * * ** *
2074971 CTAG-TTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCTGTCTAAGATTAGACCAGAATGAT
455 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * *
2075035 GGTTGCGGCAGCAGGATCGGTAGTACG-TGAGGGGAACCCGG--CTACTCCCCGGCTTGTGCATC
520 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGA-TCCCCGGCTTGCGCATC
* * * * * * * * * *
2075097 CCGCCCCTCTAGCCTGCTAAGTGTCCGCACGCTCATTTCGTGGGGTGACTTTGGCATATGGAGTT
584 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTT
* * ***
2075162 CATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTGCGG
648 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * ** **
2075227 CAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGG
713 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* ** * *
2075292 AGTACCTGATTGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
778 AGAACCTGACCGACGGCATT--GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
2075357 TGCGATGAGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCTC
840 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2075402 TCATCAAACCTTGAGAACTCACACCCCCTTAAATAACATTTGAGATTTTACAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
2075467 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
** ** *
2075532 AGTTTTTAGCTGAATTTTTTTGAACATGTGAACAAAAATACAAGGATCACGTCAACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * **
2075597 GGCCAAAAATCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGATGATCGTG
196 GGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
2075661 AAAAA-AAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
260 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
2075725 ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTAGC
325 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
2075790 AGCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCTGGTGTAGTGC--C-CGCCCGCCCG
390 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCTCGCCCGCCCG
* * * ** * *
2075852 CTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTTAGATTGGA-AAGGACCAA
455 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGA
* * *
2075916 GGGTTGCTGCAGAAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCAGCTTGCGCATC
519 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATC
* * * * * * *
2075980 CCGCCCATCTGGCCGACTGAGCACCTGCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTT
584 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTT
* *
2076045 CATTCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
648 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
2076110 CAGCATATG-TAGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACTGTCGTCG
713 CAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC--GG----G--G-C-
* * * * ** *
2076174 GAGCATCGTCGGAGAACCTGACCAATGGCATTGGGGTTCCGACGATCGGGGGGCTAGGGGGAGTG
767 -ACCATCGTCGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATCGGGGGGCCGGGGGGTGTG
* *
2076239 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCTC
829 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2076295 TCATCAAACCTCGAGAACTCACACTCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCCGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
2076360 CAGCCTTTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
2076425 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
2076490 GGCCAAAACTCTTTGCGAAAAAATTTTAAAAGATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
*
2076555 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
2076620 TTTACAAGCCATAAAAATGTCATTGGCCCATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
2076685 CCCTATCGATCCACGGCTTGTGCAACCTGTCTCTCTGACAGGCGTAGTGCCTGCTCGCCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCTCGCCCGCCCG
* *
2076750 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGGCC-GAACCGA
455 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGA
* * * *
2076814 TGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGA-CGATCCTCGGCTTGCGCATC
519 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATC
* * * * * * * * *
2076878 CTGCCCTTCTAGCCAGCTGAACGCCCGCACGCTCGTTTAGTAGGTTGATTTAGGCATAAGGAATT
584 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTA-TGGGTTGACTTAGGCATACGGAGTT
* * *
2076943 CATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGTGG
648 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * *
2077008 CAACACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGG
713 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * **
2077073 AGAAGCTGACCGACGGCATT-G-TCAGGCGATCGGAGGGGTCGGGGGGTGTGCAAACATGATGTG
778 AGAACCTGACCGACGGCATTGGTTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2077136 TGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCC
842 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2077179 TCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
2077244 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2077309 AGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTAGA
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
2077374 AGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTCTAAAATCGTGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* * * * *
2077439 AAAATAGAAAACGAGTTGTCTCGCCATTAAACTTTACGTGAAGGCTGAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* ** * * *
2077504 TTTACAAGCCATAAAAGTGGCATTGGCATGTATACATATGAAGATGTGCCTAAACCCAGCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
2077569 CCCTATCGATCCATGGCTTGTGCATCACATCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCGCCTG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCTCGCCCGCCCG
* * *
2077634 CTCGTTTCATCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA
455 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
2077699 GGTTGTGGCAGCCGGATCGCCAGCACGCAGAGGGGGACCC-GACCGATCCTCGGCTTGCACATCC
520 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATCC
* * * * *
2077763 CACCACTTTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
585 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTTC
* *** * * *
2077828 ATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTGCAGC
649 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * ** *
2077893 AGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTATTCACCGGGGCACTTTCGTCGGA
714 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC---CATC---
* * *
2077958 GCATTGCCGGATAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCTGGGGGGTGTGC
773 G---T--CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGC
** * * * *
2078023 AAACATGATGTGTGATGGGTACTGGTACTTGGACCTTATATTGGCCTCCTATCCC
830 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2078078 TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGAGTTTAC-GCGTTTGCTGCCA
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCA
* *
2078142 GTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-GTC
65 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
**
2078206 TGAGTTTTTAGCTGAATTTTTTTGTGCATAACAACAAAAATACAAGGATCACGTCTACCAAGTTT
130 -GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
2078271 GAGGCCAAAACTCTGTCCAAAAAAATTTTTAAAAATCCTGAATCGC-AAAAGTTTCAAAAATCGT
194 GGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* *
2078335 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACGATTGTATG
259 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *** *
2078400 AGTTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTAC
324 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
2078465 CACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCCGGCCGGCGTA-----G--CACCCGCCC
389 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCTCGCCCGCCC
* * * * *
2078523 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCATACCATACTGA
454 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * *
2078588 GGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGG-CCGATCCCCAGCTTGCGCATC
519 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATC
* * * * * *
2078652 CCACCCCTCTGGCCGGTTGAGCGACCACGCGCTCATTTCATGGGTTGAC-T-----TA--G-G--
584 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTT
* *
2078706 ------CA---T----AT--GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGG
648 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
2078756 CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGG
713 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC--
** ** *
2078821 AGCATCGCCGGAGAACCTGACCGGGGGCATTAGGGTTCCGGCGATCGGGGGGGCTAGGGGGCGTG
773 -G--T---CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTG
* *
2078886 TGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCC
829 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *** *
2078942 TCATCAAACCTTGAGAACTCTTGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
2079007 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
2079072 AGTTTTTAGCTGAAGTTTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** * * *
2079137 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCTAAACTGCAAAAAGTTTCGAAAATCATGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2079202 AAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
2079267 TTTACAAGCCATAACAATGGCATTGGCACACAGATATATGAAGATGTGCCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * ** *
2079332 CCCTATCGATCCACTGCTTGCGCACCCCGTCTCTCTAGCCAGCGTAGTGCCCCCCCGCCTGCCAG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCTCG-C--CC-G
* * * * *
2079397 CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAAT
451 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * * *
2079462 CAAGGGATGCGGCAGGAAGATCGGCAGCATGGAGAGGGGG-CCCCGATCGATCCTCGACTTGCGC
516 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGC
** * *
2079526 ATCCCGCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
581 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGA
* * * * *
2079591 GTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGGACCGACGGTTG
645 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * *
2079656 CGACAGCACATCCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGCGCACCATCGC
710 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* ** * **
2079721 CGGGGAACCTGACCGGTGGAATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCGCACATG
775 CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATCGG-GGGGCCGGGGGGTGTGCGCACATG
2079786 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
837 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
2079834 TCATCAAACATCGAGAACACACACCCCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTCCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* ** * *
2079899 TAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTTGAATGCTCACAAAATCTTGTACACTTCA
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * **
2079964 AGTTTTTAGCTGAATTTTTTTTTGCATACCAAAAAAAATACAGGGATCATATCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** *
2080029 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
2080094 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* ** *
2080159 TTTACAAGCCATAAAAATGGCATCGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2080224 CCCTATCGATCCACGGCTTGCACATCTCGTCTCTCT----GGC-AAATG-TAG-T-GCCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCT-GCTCGCCCGCCCG
* * * *
2080281 TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACTAGACTGAG
455 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
2080346 GGTTGCGGCAGCAGGATCGGCAGCAAGCAGAGTGGGATCCGG-TCGATCCCCGACTTGCGCATCC
520 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATCC
*** * * * *
2080410 CGTGTCTCTGCCCGGTTGAGCGCCCGCACGCTCGTTTCCTGGTTTGAC-TAGGCATACGGAG-TC
585 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGTTC
*
2080473 ATTCCCAGTCTAAG-AT-C---G---------A--C-----T-GGACC--A---AGGGTTGCAGC
649 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
2080511 AG-ACATGCT-GGCTC-GGCATGTGCTGGTGCCGCATTTTTTCTTCGTCGGGGCACC-TCGTC-G
714 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * *
2080571 AGCAACGTCGGATAACATACCGACGGGCATTGCGGGTCTTCGACGATTGGGCGGGCCGGGCGGTG
778 AG-AAC--C---T----GACCGAC-GGCATT---GGT-TCCGGCGATCGGG-GGGCCGGGGGGTG
* * * **
2080636 TGCGCCACCATGATGTGCGATGGCGTGTTAGTACTTTGCCCTTTATATTGGCCCTATTATCCC
827 TGCG-CA-CATGATGTGCGATGG-GTGCTGGTACTTGGCCC-TTATATTGGCCC-CCTATCCC
* * *
2080699 TCAATCACACCTTCAGAAAACTCAC-CACCCTTAAAGAGCCATTTAGAGA-TTTACAGG-TTG-T
1 TC-ATCAAACC-TC-GAGAACTCACACCCCCTTAAAGAG-CATTT-GAGATTTTACAGGTTTGCT
*
2080760 GCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
61 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
2080825 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAAACACGTC-AGCAA-
126 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
2080888 TATTGGGGCCAAAACTCCTTT-TGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAA
191 T-TTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * * * * *
2080952 ATCATAAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATC
254 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* ** * *
2081017 GCATGAATTTACAAGCCATAAAAATATCAATGGCACATAGAAATATGAAGATGTCCCTAAACCCA
319 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
* *
2081082 CCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTC-GG--GCCG-A-TG-TAG-T-GC
384 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCT-GCTCGC
* * **
2081139 CCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCA
448 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
2081204 GACTGAGGGTTGCGGCACCAGGACCGGCAGCACGCAGAGGGGGACCC-TACCGATCCCTGGCTTG
513 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTG
** * * * * * * *
2081268 CGCATCCCGTGTCC-CTGGCTGGCTAAGTGCTCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA
578 CGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATA
* * *
2081332 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAATCGAG
641 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAG
* * * *
2081396 GGTTGCGACAGCACATGCTGGGCTCAGGCTTGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
705 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
2081461 ATCGTCGGAGAACCTGACCGACAGAATTGAGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGC
770 ATCGTCGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGC
* *
2081526 ACATGATGAGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
832 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2081579 TCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
2081644 TAGCTATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
2081709 AGTTTTTAGCTTACTTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
2081774 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGTCAAACCGCAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* * * *
2081839 AACATAGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
2081904 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
2081969 CCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTG--C-T-CGCCCG
* * * * *
2082034 CCCACTCATTTTGTTGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
451 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * *
2082099 CGAGGGTTGCGGCCGCAGGATCGACAGCACACAGAGGGGGACCC-TATCGATCCCAGGCTTCCAC
516 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGC
* * ** **
2082163 ATCTCGCCCCTCTGGCTGGCTGAGCGTGCGCACGAACGTTTCATGGGTTGACTTAGGCATACGGA
581 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGA
* * * * * *
2082228 GTTCATTCCTAGTCTAAGCATACAGAGTCCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTA
645 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
2082293 CGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCTGCATTTTTGTTTGTCGGGGCACCATCAC
710 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA-
** * *
2082358 CGGAGCATCGACGGAGCATCGCCGGAGAACCAAACCGGCGGCATTGGGGTTCCGACGATCGGGGG
768 C----CAT---C---G--T---CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATCGGGGG
*
2082423 GCCGGGGGCGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
816 GCC-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
2082488 TATCCC
879 TATCCC
** * *
2082494 TCATCAAAGATCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTAAAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * ***
2082559 TAGCAATTAAAGTGTCTGAAATGGGGAAACTTTTTTTGCATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** *
2082624 AGTTTTTAGCTGAATTGTTTTGTGTGTGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
2082689 GGCCAAAGCTCGTTCCCAAAAAATTCTAAAAATTCCTGAACCACAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2082754 AAAATAAAAAACGAGTCGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *** * *
2082819 TTTACAAGCCAAAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCT
326 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
2082884 CTCTATCGATCCGCGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCTTGCCCGCCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-T----GCTCGCCCG
* * * *
2082949 CCCGCTCGCTCATTTCATCGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC
451 CCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * ** * * **
2083014 GGATCGAGGGTTGTGGTAGGAGGATCGAAAGCACGCAGAGGTGGACCC-GATCGATCCCTAGCTT
512 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTT
* * *
2083078 GCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCG-TT-T-CG-TG-----GGC-T--
577 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTATGGGTTGACTTAGGCATAC
* * * **
2083131 -GA---C-TT---AG-----GCATACGTAGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGG
642 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
2083183 TTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
707 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* *
2083248 CGACGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGTCAGGG
772 ---C---G--T---CGGAGAACCTGACCGACGGCATT--GGTTCCGGCGATC-GGGGGGCCGGGG
*
2083313 GGTGTGCGCACATGATGT-CTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
823 GGTGTGCGCACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2083375 TTATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCTA
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-A
* * *
2083439 GTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAACGGTCACAAAATCTTGTACACTTC
65 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
2083504 GAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATGT-TCACC---TTA
130 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTT-
* *
2083565 T--GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
193 TGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
* *
2083628 TGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAC
258 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
***
2083693 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
323 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
*
2083758 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGC--C-CGCCCGCC
388 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCTCGCCCGCC
* * * *
2083820 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCGGACCAGACCA
453 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * ***
2083885 AGGGTTGTGGCAGCAGGATCGACGGCACGTAGAGGGGGACTCGG-CTGATCTTAGGCTTGCGCAT
518 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCAT
* * *
2083949 CCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
583 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGACTTAGGCATACGGAGT
*
2084014 TCATTCCCAATCTAAGCATAC
647 TCATTCCCAGTCTAAGCATAC
2084035 AAGGATCACG
Statistics
Matches: 8184, Mismatches: 1055, Indels: 553
0.84 0.11 0.06
Matches are distributed among these distances:
847 2 0.00
848 25 0.00
849 23 0.00
850 7 0.00
851 10 0.00
853 1 0.00
854 1 0.00
856 5 0.00
857 5 0.00
858 5 0.00
859 5 0.00
860 25 0.00
861 3 0.00
862 16 0.00
863 15 0.00
864 406 0.05
865 697 0.09
866 139 0.02
867 32 0.00
868 24 0.00
869 18 0.00
870 4 0.00
872 1 0.00
873 42 0.01
874 27 0.00
875 4 0.00
876 13 0.00
877 400 0.05
878 36 0.00
879 139 0.02
880 369 0.05
881 419 0.05
882 397 0.05
883 224 0.03
884 933 0.11
885 105 0.01
886 25 0.00
887 39 0.00
888 9 0.00
889 7 0.00
890 164 0.02
891 13 0.00
892 912 0.11
893 581 0.07
894 274 0.03
895 29 0.00
896 26 0.00
897 30 0.00
898 453 0.06
899 292 0.04
900 2 0.00
901 4 0.00
902 1 0.00
903 94 0.01
905 2 0.00
906 1 0.00
908 1 0.00
909 4 0.00
911 1 0.00
913 7 0.00
914 39 0.00
915 462 0.06
916 1 0.00
917 1 0.00
918 2 0.00
919 131 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCTCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGACCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGA
ACCTGACCGACGGCATTGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
Found at i:2077846 original size:26 final size:26
Alignment explanation
Indices: 2077816--2077866 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2077806 TTGACTTAGG
2077816 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
2077842 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2077867 GATCGGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Done.