Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 14 of 129
Found at i:2079612 original size:26 final size:26
Alignment explanation
Indices: 2079582--2079634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2079572 GTTGACTTAG
*
2079582 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
* *
2079608 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCAAGCCTAA
2079634 G
1 G
2079635 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGCCTAA
Found at i:2081086 original size:865 final size:868
Alignment explanation
Indices: 2073628--2084035 Score: 11447
Period size: 892 Copynumber: 11.8 Consensus size: 868
2073618 CAAACAGAGT
* *
2073628 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2073693 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
2073758 AGTTTTTAGCAGAATTTTTAT-TGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
2073822 GGCCAAAAATCCTTTCGAAAAAAATTTAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCGGGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2073887 AAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
2073952 TTTACAAGCCATAAAAATGGCATTGGCACGAAGAAATAT-AAGATGTGCCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
2074016 CCCAATCGATCCACAGATTGCGCATCCCGTCTCTCTGGTAGGCGTAGTGCCCTCCTGCTCGCCCA
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-G--GCCG--GTG---T--AG-TCGCCCG
* * * *
2074081 CCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGAC
445 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * ** * * ** *
2074146 TG-GGGATTGTGGCAGCAGGATTGGTAGCACGCAGAAGGGGACGCGGCCGATCCCCGGCTTGCTC
510 TGAGGG-TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * *
2074210 ATCCCGCCCCTCTGGCCGACTGAGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
574 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
2074275 GTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGGTTGAGGGTTG
639 GTTCATTCCCAGTCTAAGCATAC--AG---------A-TC----AT-GGACCA-----AGGGTTG
* * *
2074340 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCG-
682 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * * *
2074404 CTGGAGCATCACCGGAGAACCTGACCGGCGACATTAGGGTTCTGGCGATCAGGGGGGCTGGGGGT
747 C-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGT
* * * *
2074469 GTGCTCACATGATGTGCGAT-GG-G-T-G--C-T-GCCTTTATATTGGCCCCCCATACC
810 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2074520 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2074585 TAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** * * **
2074650 AGTTTCTAGCAAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTAAAAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
2074715 GGCCAAAAATCCTTCCGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGGTTT-GAAAATCGTG
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCGTG
** *
2074779 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACAGACCGTTGTATGA
260 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
2074844 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
325 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
2074909 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTA
390 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTA--G-TCGCCCGCCCGCTC
* * * * *
2074974 G-TTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCTGTCTAAGATTAGACCAGAATGATGGT
452 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
** * * * * * *
2075038 TGCGGCAGCAGGATCGGTAGTACG-TGAGGGGAACCCG-GCTACTCCCCGGCTTGTGCATCCCGC
517 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGA-TCCCCGGCTTGCGCATCCCGC
* * * * * * * * * *
2075101 CCCTCTAGCCTGCTAAGTGTCCGCACGCTCATTTCGTGGGGTGACTTTGGCATATGGAGTTCATT
581 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
*
2075166 CCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGC
646 CCCAG--T---C-T---AAG--CA----TA--C--AGATC--A-TGGACCAAGGGTTGCGGCAGC
* * **
2075231 ACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---T-----CA
689 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* ** * * **
2075288 ---CCGGAGTACCTGATTGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCA
754 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGTGTGCGCA
* * * *
2075350 CATGATGTGCGATGAGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCTC
817 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2075402 TCATCAAACCTTGAGAACTCACACCCCCTTAAATAACATTTGAGATTTTACAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
2075467 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
** ** *
2075532 AGTTTTTAGCTGAATTTTTTTGAACATGTGAACAAAAATACAAGGATCACGTCAACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * **
2075597 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGATGATCGTGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2075662 AAAA-AAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
2075726 TTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTAGCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2075791 GCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCGCCCGCTCA
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT---CGCCCGCCCGCTCG
* * ** * **
2075856 TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTTAGATTGGA-AAGGACCAAGGGT
453 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGT
* * * * *
2075920 TGCTGCAGAAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCC
517 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
* * * * * * *
2075985 CATCTGGCCGACTGAGCACCTGCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
582 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
2076050 CCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
647 CCAGTCTAAGCATAC--AG---------A-TC----AT-GGACC--A---AGGGTTGCGGCAGCA
* * * * **
2076115 TATG-TAGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACTGTCGTCGGAGCA
690 CATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
* * * * *
2076179 TCGTCGGAGAACCTGACCAATGGCATTGGGGTTCCGACGATCGGGGGGCTAGGGGGAGTGCGCAC
754 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGTGTGCGCAC
* *
2076244 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCTC
818 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2076295 TCATCAAACCTCGAGAACTCACACTCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCCGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
2076360 CAGCCTTTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
2076425 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
2076490 GGCCAAAACTCTTTGCGAAAAAATTTTAAAAGATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
*
2076555 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * **
2076620 TTTACAAGCCATAAAAATGTCATTGGCCCATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2076685 CCCTATCGATCCACGGCTTGTGCAACCTGTCTCTCTGACAGGCGTAGTGCCT-GCTCGCCCGCCC
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG---GCCG--GTG--TAG-TCGCCCGCCC
* * *
2076749 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGGCC-GAACCG
448 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTG
* * * * *
2076813 ATGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGA-CGATCCTCGGCTTGCGCAT
512 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCAT
* * * * * * * * *
2076877 CCTGCCCTTCTAGCCAGCTGAACGCCCGCACGCTCGTTT-AGTAGGTTGATTTAGGCATAAGGAA
576 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAG
*
2076941 TTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGT
640 TTCATTCCCAGTCTAAGCATAC--AG---A-T--C--------AT-GGACC--A---AGGGTTGC
* * * *
2077006 GGCAACACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC
683 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
* * *
2077071 GGAG-A-------AG---CTGACCGACGGCATT---G-TCAGGCGATCGGAGGGGTCGGGGGGTG
748 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG-CCGGGGGTG
** * *
2077121 TGCAAACATGATGTGTGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCC
811 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2077179 TCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
2077244 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2077309 AGTTTTTAGCTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTAGA
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
2077374 AGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAACGTTTCTAAAATCGTGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* * * * *
2077439 AAAATAGAAAACGAGTTGTCTCGCCATTAAACTTTACGTGAAGGCTGAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * * *
2077504 TTTACAAGCCATAAAAGTGGCATTGGCATGTATACATATGAAGATGTGCCTAAACCCAGCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
2077569 CCCTATCGATCCATGGCTTGTGCATCACATCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCGCCTG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT--C-GCCCG--C-CC-G
* * * *
2077634 CTCGTTTCATCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA
449 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * * * *
2077699 GGTTGTGGCAGCCGGATCGCCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCC
514 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * * * *
2077764 ACCACTTTAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
579 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
2077829 TTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTGCAGCA
644 TTCCCAG--T---C-TA---AG--CA-T---A--C--AGATC--A-TGGACCAAGGGTTGCGGCA
* * * ** **
2077894 GCACATACTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTATTCACCGGGGCACTTTCGTCGGAG
687 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * *
2077959 CATTGCCGGATAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCTGGGGGGTGTGCA
752 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGTGTGCG
* * * * *
2078024 AACATGATGTGTGATGGGTACTGGTACTTGGACCTTATATTGGCCTCCTATCCC
815 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2078078 TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGAGTTTAC-GCGTTTGCTGCCA
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCA
* *
2078142 GTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-GTC
65 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
**
2078206 TGAGTTTTTAGCTGAATTTTTTTGTGCATAACAACAAAAATACAAGGATCACGTCTACCAAGTTT
130 -GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
2078271 GAGGCCAAAACT-CTGTCCAAAAAAATTTTTAAAAATCCTGAATCGC-AAAAGTTTCAAAAATCG
194 GGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
* *
2078334 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACGATTGTAT
258 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
2078399 GAGTTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTA
323 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
2078464 CCACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCCGGCCGGCGTAG-CACCCGCCCGCTCG
388 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTCGCCCGCCCGCTCG
* * * *
2078528 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCATACCATACTGAGGGTT
453 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* ** * *
2078593 GCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCACCC
518 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
2078658 CTCTGGCCGGTTGAGCGACCACGCGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC
583 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
** * * * *
2078723 CAGTCTAAG-AT-TGGACCA--GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTT
648 CAGTCTAAGCATACAGATCATGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * **
2078784 GGTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGGGGC
713 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
* * * * * *
2078849 ATTAGGGTTCCGGCGATCGGGGGGGCTAGGGGGCGTGTGCACATGATGTGCGATGGGTGCTGGTG
778 ATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
2078914 CTTGGCCCTTATATTGGCCCCCTATCCC
841 CTTGGCCCTTATATTGGCCCCCTATCCC
* *** *
2078942 TCATCAAACCTTGAGAACTCTTGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
2079007 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
2079072 AGTTTTTAGCTGAAGTTTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * * *
2079137 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCTAAACTGCAAAAAGTTTCGAAAATCATGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2079202 AAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
2079267 TTTACAAGCCATAACAATGGCATTGGCACACAGATATATGAAGATGTGCCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
2079332 CCCTATCGATCCACTGCTTGCGCACCCCGTCTCTCTAGCCAGCGTAGTGCCCCCCCGCCTGCCAG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT-------CG-C--CC-G
* * * *
2079397 CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCA-AA
445 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * * *
2079461 TCAAGGGATGCGGCAGGAAGATCGGCAGCATGGAGAGGGGGCCCCGATCGATCCTCGACTTGCGC
510 T-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
** * *
2079526 ATCCCGCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
574 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
2079591 GTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGGACCGACGGTTG
639 GTTCATTCCCAGTCTAAGCATAC--AG---A-T------C----A-TGGACC--A---AGGGTTG
* * * * *
2079656 CGACAGCACATCCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGCGCACCA---T
682 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
** * *
2079718 C---GC--CG--GG-GAACCTGACCGGTGGAATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGT
747 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGT
2079775 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
810 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
2079834 TCATCAAACATCGAGAACACACACCCCCTTAAAGGGCATTTCAGATTTTACAGGTTTGCTCCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* ** * *
2079899 TAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTTGAATGCTCACAAAATCTTGTACACTTCA
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * **
2079964 AGTTTTTAGCTGAATTTTTTTTTGCATACCAAAAAAAATACAGGGATCATATCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** *
2080029 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCATGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
2080094 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
2080159 TTTACAAGCCATAAAAATGGCATCGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *** *
2080224 CCCTATCGATCCACGGCTTGCACATCTCGTCTCTCTGGCAAATGTAGT-GCCCGCCCGTTCGTTT
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTCGCCCGCCCGCTCGTTT
* *
2080288 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACTAGACTGAGGGTTGCG
456 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
* * * * * * ***
2080353 GCAGCAGGATCGGCAGCAAGCAGAGTGGGATCCGGTCGATCCCCGACTTGCGCATCCCGTGTCTC
521 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
2080418 TGCCCGGTTGAGCGCCCGCACGCTCGTTTCCTGGTTTGAC-TAGGCATACGGAG-TCATTCCCAG
586 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
2080481 TCTAAG-AT-C-GA-C-TGGACCAAGGGTTGCAGCAG-ACATGCT-GGCTC-GGCATGTGCTGGT
651 TCTAAGCATACAGATCATGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
2080538 GCCGCATTTTTTCTTCGTCGGGGCACC-TCGTC-GAGCAACGTCGGATAACAT-ACCGACGGGCA
716 GCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC-GGCA
* * *
2080600 TTGCGGGTCTTCGACGATTGGGCGGGCCGGGCGGTGTGCGCCACCATGATGTGCGATGGCGTGTT
779 TTG-GGGT-TCCGACGATCGGG-GGGCCGGG-GGTGTGCG-CA-CATGATGTGCGATGG-GTGCT
* * **
2080665 AGTACTTTGCCCTTTATATTGGCCCTATTATCCC
837 GGTACTTGGCCC-TTATATTGGCCC-CCTATCCC
* * *
2080699 TCAATCACACCTTCAGAAAACTCAC-CACCCTTAAAGAGCCATTTAGAGA-TTTACAGG-TTG-T
1 TC-ATCAAACC-TC-GAGAACTCACACCCCCTTAAAGAG-CATTT-GAGATTTTACAGGTTTGCT
*
2080760 GCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
61 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
2080825 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAAACACGTC-AGCAA-
126 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * *
2080888 TATTGGGGCCAAAACTCCTTTTGAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
191 T-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * * * * *
2080953 TCATAAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATCG
255 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* ** * ** *
2081018 CATGAATTTACAAGCCATAAAAATATCAATGGCACATAGAAATATGAAGATGTCCCTAAACCCAC
320 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
2081083 CTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTCGGGCCGATGTAGT-GCCCGCCCGC
385 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTCGCCCGCCCGC
* * **
2081147 TCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGG
450 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * *
2081212 GTTGCGGCACCAGGACCGGCAGCACGCAGAGGGGGACCCTACCGATCCCTGGCTTGCGCATCCCG
515 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
** * * * * * * * *
2081277 TGTCC-CTGGCTGGCTAAGTGCTCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
580 -CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
2081341 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGACA
644 TTCCCAGTCTAAGCATAC--AG---------A-TC----AT-GGA-C----CAAGGGTTGCGGCA
* * *
2081406 GCACATGCTGGGCTCAGGCTTGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC---G
687 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * *
2081465 --T---CGGAGAACCTGACCGACAGAATTGAGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCG
752 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGTGTGCG
* *
2081525 CACATGATGAGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
815 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2081579 TCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
2081644 TAGCTATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
2081709 AGTTTTTAGCTTACTTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** *
2081774 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGTCAAACCGCAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* * * *
2081839 AACATAGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
2081904 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCACCA
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
2081969 CCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--GT-GT-------AGT-CGCCCG
* * * * *
2082034 CCCACTCATTTTGTTGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
445 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * *
2082099 CGAGGGTTGCGGCCGCAGGATCGACAGCACACAGAGGGGGACCCTATCGATCCCAGGCTTCCACA
510 TGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * ** **
2082164 TCTCGCCCCTCTGGCTGGCTGAGCGTGCGCACGAACGTTTCATGGGTTGACTTAGGCATACGGAG
575 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* *
2082229 TTCATTCCTAGTCTAAGCATACAGAGTCCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTAC
640 TTCATTCCCAGTCTAAGCATACAGA-T-CA-T----G----------GACC--A---AGGGTTGC
* * * *
2082294 GGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCTGCATTTTTGTTTGTCGGGGCACCATCACC
683 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C
** *
2082359 GGAGCATCGACGGAGCATCGCCGGAGAACCAAACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
745 ---G--T---CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
2082424 CCGGGGGCGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
802 CC--GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2082489 ATCCC
864 ATCCC
** * *
2082494 TCATCAAAGATCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTAAAGGTTTGCTGCCAG
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * ***
2082559 TAGCAATTAAAGTGTCTGAAATGGGGAAACTTTTTTTGCATGGTCACAAAATCTTGTACACTTCG
66 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** *
2082624 AGTTTTTAGCTGAATTGTTTTGTGTGTGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGG
131 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
2082689 GGCCAAAGCTCGTTCCCAAAAAATTCTAAAAATTCCTGAACCACAAAAAGTTTCAAAAATCGTGA
196 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
2082754 AAAATAAAAAACGAGTCGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
2082819 TTTACAAGCCAAAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCT
326 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
2082884 CTCTATCGATCCGCGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTGCTTGCCCGCCCGCCCG
391 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTA--G--T-------CGCCCG
* * * *
2082949 CCCGCTCGCTCATTTCATCGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC
445 CCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * **
2083014 GGA-TCGAGGGTTGTGGTAGGAGGATCGAAAGCACGCAGAGGTGGACCCGATCGATCCCTAGCTT
506 AGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
2083078 GCGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATA
570 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * * *
2083143 CGTAGTTCATTCCCAATCTAAG-AT-CCGA-C-TGGACCGAGGGTTACGGCAGCACATGCTGGGC
635 CGGAGTTCATTCCCAGTCTAAGCATACAGATCATGGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * *
2083204 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGACGGAGCATCGCCGGAGAA
700 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
2083269 CCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGT-CT
765 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGTGTGCGCACATGATGTGC-
*
2083333 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
827 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2083375 TTATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCTA
1 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-A
* * *
2083439 GTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAACGGTCACAAAATCTTGTACACTTC
65 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
2083504 GAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATGT-TCACC---TTA
130 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTT-
* * *
2083565 T--GGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
193 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
* *
2083628 TGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAC
258 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
2083693 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
323 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
2083758 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGC
388 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT---CGCCCGCCCGC
* * * **
2083823 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCGGACCAGACCAAGG
450 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
* * * * * ***
2083888 GTTGTGGCAGCAGGATCGACGGCACGTAGAGGGGGACTCG-GCTGATCTTAGGCTTGCGCATCCC
515 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCC
* * *
2083952 GCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
579 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
2084017 TTCCCAATCTAAGCATACA
644 TTCCCAGTCTAAGCATACA
2084036 AGGATCACGT
Statistics
Matches: 8143, Mismatches: 1028, Indels: 715
0.82 0.10 0.07
Matches are distributed among these distances:
848 18 0.00
849 23 0.00
850 6 0.00
851 12 0.00
853 2 0.00
854 1 0.00
855 2 0.00
856 6 0.00
857 6 0.00
858 10 0.00
859 8 0.00
860 22 0.00
861 2 0.00
862 16 0.00
863 14 0.00
864 385 0.05
865 751 0.09
866 133 0.02
867 34 0.00
868 25 0.00
869 23 0.00
870 1 0.00
872 3 0.00
873 43 0.01
874 29 0.00
875 3 0.00
876 14 0.00
877 432 0.05
878 48 0.01
879 139 0.02
880 385 0.05
881 425 0.05
882 394 0.05
883 183 0.02
884 843 0.10
885 100 0.01
886 27 0.00
887 29 0.00
888 8 0.00
889 19 0.00
890 192 0.02
891 15 0.00
892 892 0.11
893 568 0.07
894 259 0.03
895 30 0.00
896 25 0.00
897 26 0.00
898 460 0.06
899 295 0.04
900 3 0.00
901 10 0.00
903 59 0.01
906 1 0.00
907 1 0.00
908 1 0.00
909 2 0.00
911 1 0.00
912 3 0.00
913 9 0.00
914 37 0.00
915 456 0.06
917 3 0.00
918 2 0.00
919 169 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACAGATCATGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCC
Found at i:2081364 original size:26 final size:26
Alignment explanation
Indices: 2081327--2081379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2081317 GTTGGCTTAG
2081327 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2081353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2081379 G
1 G
2081380 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2082249 original size:26 final size:26
Alignment explanation
Indices: 2082219--2082270 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2082209 GTTGACTTAG
* * *
2082219 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
2082245 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
2082271 TATCAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:2084540 original size:26 final size:26
Alignment explanation
Indices: 2084504--2084556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2084494 GTTGACTTAG
2084504 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* * *
2084530 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2084556 G
1 G
2084557 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:2088523 original size:26 final size:26
Alignment explanation
Indices: 2088487--2088536 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2088477 GGGTCTGATT
*
2088487 TTAGATTGGGAATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
* *
2088513 TTAGACTGGGAATGAACTCTGTAT
1 TTAGACTGGGAATAAACTCCGTAT
2088537 ACCTGGGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:2089040 original size:886 final size:888
Alignment explanation
Indices: 2086135--2090647 Score: 5329
Period size: 866 Copynumber: 5.1 Consensus size: 888
2086125 NNNNNNNNNN
* * * *
2086135 GGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGTCTTGTA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* * * *
2086200 AATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTAATGGCGAGACGACTCCTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * * *
2086265 TTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-
131 TTTCAATATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGA
* * * * * * * *
2086329 GCCCCAACTT-ATTGAACGTGATCCTTGTACTTTTGTTGGAATGCATAAAAAAATTCAGCTAAAA
196 ACCCAAACTTGGTAG-ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
2086393 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGG
260 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
2086458 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
2086523 TGAGGGATAGGGGGCCAATATGAGGGCCAAGAACCAGCACCCATCACACATTATGTGTGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--
* ** * *
2086588 CCCCCGGCCACCCCAATTGTCGGAACCCCAATGCCG-CTAATCAAGTTCT-C--CG--G-T----
453 --CCC-G-C-CCCCGATCATCGGAACCCCAATGCCGTC-GATCAGGTTCTCCGGCGATGCTCCGA
* **** * * *
2086642 -GATGGTGCCCCGACGAAGAAAAATATATCACCAGCACATGCGCGAGCCCAACATGTGCTACCGC
512 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
2086706 -AGCAT---TC--G---G-TC----A----G---G---TCC-AAT-CTTAGACTGGGAATGAACT
577 AACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
2086745 CCGTATGCCTAAGTCAGCCTACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGTGGTGGGATG
642 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
** * * * * * * ** *
2086810 CGCAAGCCGAAGATCAGCCAGGTCCACCTCTGTGTGCTGCCGATCTTGCAACTGCAACCCTCAGT
707 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTG-ACTGCCGATCCTACTGCCGCAACCCTCAGT
* * * * *
2086875 CTAGT-TCGATCTTAGACTGTGAATGAACTCTGTATGCCTAAGCCAACCGATGAAAC-A---TGC
771 CTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
** * * *
2086935 GGGCAGGCACTACACCGGCCAGAGTGACGGGATGCGTAAGCTATGGATCGATAG
835 GGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * * *
2086989 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCACGCCAATGCCATTTTTATGGCTTGCA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* * *
2087054 AGTTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATC
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * * *
2087119 TTTCACTATTTTTGAAATTTTTTGCGGTTTGGGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGG
131 TTTCAATATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGA
* * * *
2087184 CCCCGAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAA
196 ACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
2087249 TTCAAACTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
261 CTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
2087314 TACGGGAAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGAT
326 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
*
2087379 GAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCC
391 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA---
* * * * * *
2087444 CCCTGGCCCTTCCAATCATTGGAACCCCAATGCCGTCGGTCAGGCTCTCCGACGATGCTCCGGCG
453 CCC--GCCC--CCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACG
* * *
2087509 ATGGTGCCTCGGCGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
514 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
2087574 CCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACGGGGAATGAACACC
579 CCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * *
2087639 GTGTGCCTAAGTCAACCCATGAAACGAGCGTACGGCCGCTCAGCCGGCCAGAGGGGCGGGATACG
644 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
**
2087704 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGTTCTCTGCCGATCCTACTGCCGCAACCCTCAGTC-
709 CAAGCCGGGGATCGGCCGGGTCCCCCTCTG-TGACTGCCGATCCTACTGCCGCAACCCTCAGTCT
* *
2087768 GAGTCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
773 G-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------
* * *
2087833 GCGGGCGGGCAGGCACTATGCCGGCCAGAGAGATGGGATGCGTAAGCCTTGGATCGATAG
829 GCGGGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * *
2087893 GGTAGTGGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* *
2087958 AATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
2088023 TTTTACA-ATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTG
131 TTTCA-ATATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
2088087 AACCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAA
195 AACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
2088152 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
260 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
2088217 CTACTGGCAGTAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
2088282 TGAGGGACAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-C
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * *
2088345 C-CCCCCGATCATTGGAACCCCAATGCCGTCAATCAGGTTCTCCGGTGATGCTCCGACGATGGTG
455 CGCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * *
2088409 CCCCGGTGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCGCAACCCTCG
520 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
2088474 GTCGGGTCTGATTTTAGATTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATAC
585 GTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
** * * * * * *
2088539 CTGGGTCAACCCACGGAACGAGCGTGCAGGCGCTCAGCTGACCAAAGAGGCGGGATGCGCAAGCC
650 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * *
2088604 GGGGATCGGCCGGGTCCCCCTCTGTGCACTACAAATCCTACTACTGTAACCCTCAGTCTGGTCTG
715 GGGGATCGGCCGGGTCCCCCTCTGTG-ACTGCCGATCCTACTGCCGCAACCCTCAGTCTGGTCTG
*
2088669 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGGCA
779 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCA
*
2088734 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCCTGGATCGATAG
844 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* *
2088779 GGTAGTAGGTGGGTTTAGGTACATCTTAATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
*
2088844 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
2088909 TTTTAAGA-TTTTCAAAGCTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
131 TTTCAATATTTTTGAAA-CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
2088973 AACCCAAACTTGGTAGACATGATGCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAA
195 AACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
2089038 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATGG
260 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * *
2089103 CTACTGGCAGCAAACCTATAAACTCTCAAATGCTCTTTAATGGTGTGTGAGTTCTCGAGGTTTTA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
2089168 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--
* ** * *
2089233 CCACGGTCCCCCGATCGTCAAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCTGGCGA
453 CC-C-G-CCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGA
* * * *
2089298 TGGTG-CCCGGAC-ATG-----TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGTAA
515 TGGTGCCCCGG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
*
2089356 CCCTCGGTC----C-G------G--T-----T----T--G-AT-CTTAGACTGGGAATGAACTTC
579 CCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
2089395 GTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGACGGGATGCG
644 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * **
2089460 CAAGCCGGGGATCGGTCGGGTCCCCCTCTCCGTG-CTGCCGATCCTACTGCCGCAACCATTGGTC
709 CAAGCCGGGGATCGGCCGGGTCCCCCTCT--GTGACTGCCGATCCTACTGCCGCAACCCTCAGTC
* ** * *
2089524 CGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGG
772 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * ** *
2089589 GCGGGTGGGCACTATCCCAACCAGAGAGACGGGATGTGCAAGCCATGGATCGATAG
837 GC----AGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * *
2089645 GGTGGTAGGTGGGTTTAGGTATATCTTCATATTTCTACATGCCAATGCCTTTTTTATGGCTTTTA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* *
2089710 AATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
2089775 TTTCATTATTTTTTAAACTTTTTACGGTTC-AGGATTTTGTAAAATTTATTCGGAACGAGTTTTG
131 TTTCAATATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * * ***
2089839 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGTGTAAAAAAATTCAGCTAAAA
195 AACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * * * *
2089904 ACTTGAAGTGTACAAGATTTTGTGACGATTTGAAAAAGGTGTCCCCATTTTAAACACTTTAATGG
260 ACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
2089969 CTACTGGCAGCAAAGCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGA
325 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
2090034 TGAGGGATA---GG---------GGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACC
390 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--
* ** ** *
2090087 CCCCCGGCCCCTCCATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCTGGCGATGCTCCGACG
453 --CCC-GCCCC-CGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACG
* * * * *
2090152 ATGGTGCCCCGACGAAGAAAGATGCGGCACCAGCACATGCCCGAGCACAGCATGTGTTGTCGCAA
514 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
2090217 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCC
579 CCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** ** *
2090282 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTACTCAAACGGCTAGAGGGGCGGGATGCG
644 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
2090347 CAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGAGCTGTCGATCCTGCTGCCGTAACCCTC-GATC
709 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGA-CTGCCGATCCTACTGCCGCAACCCTCAG-TC
* * * * * *
2090411 TAGTTTGATCTTAGAATCGGAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCGG
772 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGC--
* * * * *
2090476 GCAGGCGGGCGGGCACTACGCCAGCCAGAGAGATGGGAT-CGCAAGCCATGGAGCGATAG
831 G--GGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* *
2090535 GGTGGTAGGTGGGTTTAGGTGCATGTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
1 GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* * *
2090600 AAGTCATACAATGGTTCCTTAAGACTTCACGTGAAGTTTCATGGCAAG
66 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
2090648 TTCGGGATTT
Statistics
Matches: 3173, Mismatches: 359, Indels: 218
0.85 0.10 0.06
Matches are distributed among these distances:
853 2 0.00
854 229 0.07
855 314 0.10
856 14 0.00
858 2 0.00
860 1 0.00
861 46 0.01
862 184 0.06
863 4 0.00
864 4 0.00
865 2 0.00
866 448 0.14
867 10 0.00
870 3 0.00
872 2 0.00
874 1 0.00
875 2 0.00
876 2 0.00
877 1 0.00
879 1 0.00
880 1 0.00
883 2 0.00
884 2 0.00
885 12 0.00
886 433 0.14
887 214 0.07
888 47 0.01
889 1 0.00
890 125 0.04
891 35 0.01
892 169 0.05
893 12 0.00
894 376 0.12
895 8 0.00
896 3 0.00
899 2 0.00
903 47 0.01
904 412 0.13
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCAATATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGA
ACCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
GCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGGCCGGGTCCCCCTCTGTGACTGCCGATCCTACTGCCGCAACCCTCAGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
ATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
Found at i:2090264 original size:26 final size:26
Alignment explanation
Indices: 2090235--2090287 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2090225 CCGGTCTGAT
2090235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2090261 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2090287 C
1 C
2090288 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2091121 original size:26 final size:26
Alignment explanation
Indices: 2091084--2091165 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
2091074 CCGATCCGAT
* **
2091084 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2091110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2091136 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2091162 CTTA
1 CTTA
2091166 AGTCAACCCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2091333 original size:875 final size:883
Alignment explanation
Indices: 2090235--2092914 Score: 2252
Period size: 864 Copynumber: 3.0 Consensus size: 883
2090225 CCGGTCTGAT
*
2090235 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
2090300 ACGAAACGAGCGTGCGGGTACTCAAACGGCTAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCG
66 ACGAAACGAGCGTGCGGGTACTCAAACGACGAGAGGGGCGGGATGCACAAGCCAGGGATCGACCG
* * * * * *
2090365 GGTCCCCCTCTGTGAGCTGTCGATCCTGCTGCCGTAACCCTCGATCTAGTTTGATCTTAGAATCG
131 AGTCCCCCTCTGTCAGCTGTCGATCCTGCTACCGGAACCCTCGATCCAGTTCGATCTTAGAATCG
** *
2090430 GAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCGGGCAGGCGGGCGGGCACTAC
196 GAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCAAGCAGGCGGCCGGGCACTAC
** * **
2090495 GCCAGCCAGAGAGATGGGAT-CGCAAGCCATGGAGCGATAGGGTGGTAGGTGGGTTTAGGTGCAT
261 GCCAGCCAGAGAGACAGGATGCGCAAGCCATGAAGCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
2090559 GTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTTCCTTAAGA
326 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGA
2090624 CTTCACGTGAAG-TT-T-C-A-T-G-GCA-A-G-TT-C-G-G-GATTTTTTAAAATTTTTTCGGA
391 CTTCACGTGAAGTTTATACGACTCGTGCACATGATTACGGTGAGATTTTTTAAAATTTTTTCGGA
* * * *
2090675 AAGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTTACATGCACAAAAAAAT
456 AAGAGTTTTGGCCCCAAACCTGGTAAACGTGATCCTTGCATTTTTGTTGACATGCACAAAAAAAG
* * *
2090740 TCAGCTAAAAAGTCAAAGTGTAGAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTT-AGA
521 GCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGA
* * *
2090804 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTC
586 CACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
2090869 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
651 TCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* *
2090934 GTGCACACA-CCCCCC-G-ATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCT
716 GTGCACACAGCCCCCCGGCATC-TCCGGAACCCCAATGCCG-C---CA----ATC-AGC--TGCT
*
2090995 CCGACGATGGTGCCCCAGCGAAGAAAAATGTGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTG
769 CCGACGATGGTGCCCCAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
2091060 TCGTAATCCTCGGTCC-GATCCGATCTTAGACAGGGAATGAACTTTGTATG
834 CCGCAACCCTCGATCCAG-TCCGATCTTAGACAGGGAATGAACTTCGTATG
*
2091110 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * * *
2091175 ACGAAATGAGCGTGCGGGCT-CTCAGCCGACGAGAGGGGCGGGATGCATAAGCCGGGGATCGATC
66 ACGAAACGAGCGTGCGGG-TACTCAAACGACGAGAGGGGCGGGATGCACAAGCCAGGGATCGACC
* * * * * * *
2091239 GAGTCCTCTTCTG-CATGCTGTCGATCCTGCTATCGGAACCCTTGGTCCGGTTCGATCTTAGACT
130 GAGTCCCCCTCTGTCA-GCTGTCGATCCTGCTACCGGAACCCTCGATCCAGTTCGATCTTAGAAT
* * * * *
2091303 GGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGAGCAAGCGGGCGGCCGGGCACT
194 CGGAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCAAGCAGGCGGCCGGGCACT
* * *
2091368 ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
259 ACGCCAGCCAGAGAGACAGGATGCGCAAGCCATGAAGCGATAGGGTGGTAGGTGGGTTTAGGCAC
*** *
2091433 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
324 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAA
* *
2091498 GCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCCATTTTCACCATTTTTGAAAATTTTT
389 GACTTCACGTGAAGTTT-AT------ACGACTCG---------TGCA-CA----TG---A---TT
* ** * *
2091563 ACGGTTCGAGATTTTTTAATATTTTTTCGGACGGAGTTTTGGCCCCAAACTTTGTAAACGTGATC
427 ACGG-T-GAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACCTGGTAAACGTGATC
* **
2091628 CTTGCATTTTTGTTGGCATGCACAAAAAAAGGCAGCTAAAAACTTGAAGTGTACAAGATTTTGTA
490 CTTGCATTTTTGTTGACATGCACAAAAAAAGGCAGCTAAAAACTCAAAGTGTACAAGATTTTGTA
* *
2091693 ACCATTTGAAAAAAGTTTCCCCATTTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
555 ACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATAGCTACTGGCAACAAACCTGTAAAA
2091758 TCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAA
620 TCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAA
*
2091823 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCCGGCCCCTCTAATCTCCGG
685 GGGCCAAGTACCAGCACCCATCACACATCATGTGCACACAGCCCCCCGG-----C--ATCTCCGG
* * *
2091888 AACCCTAATGCCGCCAATCAGCTTCTCCGACGATGGTGCCTCAGCGAAGAAAAATGTGGCACCAG
743 AACCCCAATGCCGCCAATCAGCTGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGTGGCACCAG
* *
2091953 CACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATG
808 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACAGGGAATG
2092018 AACTTCGTATG
873 AACTTCGTATG
2092029 CTTAGACTGGGAATGAACTCCGTATGC-----C------T--A------A-G--T---T-AACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** * * * * * * * *
2092068 ACGAAATGAACGTGCAGGCACTCAGCCGGCCCGAGGATCGGTCGGG-TCCCCCA-CTATGTGAT-
66 ACGAAACGAGCGTGCGGGTACTCAAAC-G-ACGA-GA-GGGGCGGGATGCACAAGCCA-GGGATC
* ** * * ** * * * * * *
2092130 G-CC-AATCCTGCTGGTGT-AACCCTC-AGT-CTGGT-CC-G-ATCTTAGA-CTAG---GAAC--
126 GACCGAGTCCCCCT-CTGTCAGCTGTCGA-TCCTGCTACCGGAACCCTCGATCCAGTTCGATCTT
* * * * *
2092181 A-----------AACTCCGTATGCCTAAGCCAACCAACG--AC--ACGAGC--G--GGTGGGCGG
189 AGAATCGGAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCAAGCAGGCGGCCGG
* * * * *
2092227 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTG-ATCGATAGGGTGGTAGGTGGGTTT
254 GCACTACGCCAGCCAGAGAGACAGGATGCGCAAGCC-ATGAAGCGATAGGGTGGTAGGTGGGTTT
** * * *
2092291 AGATACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
318 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTC
* * * * *
2092356 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATTTTTCACGACTTTCAAA
383 CCTTAAGACTTCACGTGAAGTTT-AT------ACGACTCG---TGCA-----CATGA--TT----
* * * * * * *
2092421 ACTTTTTGTGGTTTGGGATTTTGTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGA
427 AC-------GG--TGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACCTGGTAAA
* * * * ** * *
2092486 TGTGATCCTTGTATTTCTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTCTAACTGTACAAG
483 CGTGATCCTTGCATTT-TTGTTGACATGCACAAAAAAAGGCAGCTAAAAACTCAAAGTGTACAAG
* * * *
2092550 ATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACCCTTTAATGGCTACTGGCAGCAAAC
547 ATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATAGCTACTGGCAACAAAC
* * *
2092614 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATAAGGGATAGGGGGC
612 CTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* * * *
2092679 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACACA--CCCCCGGCCCCCTCG
677 CAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACAGCCCCCCGG---CATC-
* ** * * * * * *
2092742 ATCGTCGTAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT--CCGA-CGAAGAAAAATGT
738 -TC--CGGAACCCCAATGCCGCCAATCAGCTGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGT
* * * * *
2092804 GGCATCAGCACATGCCCGAGCACAGCATGTGCTACCGCAACCATCGATCCGGTCCGATCTTAGAC
800 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGAC
* * *
2092869 TGGGAATGAACTCCATATG
865 AGGGAATGAACTTCGTATG
2092888 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
2092915 CTACGTCAAA
Statistics
Matches: 1531, Mismatches: 184, Indels: 196
0.80 0.10 0.10
Matches are distributed among these distances:
854 3 0.00
855 1 0.00
858 9 0.01
859 116 0.08
860 7 0.00
862 41 0.03
864 299 0.20
865 129 0.08
866 5 0.00
868 6 0.00
870 2 0.00
872 25 0.02
874 1 0.00
875 240 0.16
876 110 0.07
877 2 0.00
879 1 0.00
883 1 0.00
885 3 0.00
886 1 0.00
887 1 0.00
888 3 0.00
889 5 0.00
890 1 0.00
891 1 0.00
892 5 0.00
893 38 0.02
894 6 0.00
895 5 0.00
896 9 0.01
897 7 0.00
899 3 0.00
900 1 0.00
901 1 0.00
906 2 0.00
908 1 0.00
913 2 0.00
914 2 0.00
915 1 0.00
918 1 0.00
919 266 0.17
920 135 0.09
921 8 0.01
922 3 0.00
926 2 0.00
929 2 0.00
930 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTACTCAAACGACGAGAGGGGCGGGATGCACAAGCCAGGGATCGACCG
AGTCCCCCTCTGTCAGCTGTCGATCCTGCTACCGGAACCCTCGATCCAGTTCGATCTTAGAATCG
GAATGAACTCCGTATGCCAAACCCAACCGACGAAACGAACGAGCAAGCAGGCGGCCGGGCACTAC
GCCAGCCAGAGAGACAGGATGCGCAAGCCATGAAGCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGA
CTTCACGTGAAGTTTATACGACTCGTGCACATGATTACGGTGAGATTTTTTAAAATTTTTTCGGA
AAGAGTTTTGGCCCCAAACCTGGTAAACGTGATCCTTGCATTTTTGTTGACATGCACAAAAAAAG
GCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGA
CACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCACACAGCCCCCCGGCATCTCCGGAACCCCAATGCCGCCAATCAGCTGCTCCGACGATGGTG
CCCCAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
ATCCAGTCCGATCTTAGACAGGGAATGAACTTCGTATG
Found at i:2092039 original size:26 final size:26
Alignment explanation
Indices: 2092003--2092055 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2091993 CCAGTCCGAT
*
2092003 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2092029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2092055 C
1 C
2092056 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2092898 original size:26 final size:26
Alignment explanation
Indices: 2092862--2092914 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2092852 CCGGTCCGAT
2092862 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2092888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2092914 C
1 C
2092915 CTACGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2093219 original size:859 final size:851
Alignment explanation
Indices: 2091362--2093259 Score: 2387
Period size: 864 Copynumber: 2.2 Consensus size: 851
2091352 CGGGCGGCCG
* *
2091362 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTT
1 GGCAC-ACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
2091427 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
64 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
2091492 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCCATTTTCACCATTTTTGAAA
129 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTCACCATCTTTCAAA
* * * * *
2091557 ATTTTTACGGTTCGAGATTTTTTAATATTTTTTCGGACGGAGTTTTGGCCCCAAACTTTGTAAAC
194 ATTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAAAC
*
2091622 GTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAGGCAGCTAAAAACTTGAAGTGTACAAGAT
259 GTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAAGGCAGCTAAAAACTTGAACTGTACAAGAT
*
2091687 TTTGTAACCATTTGAAAAAAGTTTCCCCATTTTCAGACACTTTAATGGCTACTGGCAACAAACCT
324 TTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAACAAACCT
*
2091752 GTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
389 GTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCA
* *
2091817 ACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAGCCCCCCGGCCCCTCTAAT
454 ACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACACACA-CCCCCCGGCCCCTCTAAT
* *
2091882 CTCCGGAACCCTAATGCCGCCAATCAGCTTCTCCGACGATGGTGCCTCAGCGAAGAAAAATGTGG
518 CTCCGGAACCCCAATGCCGCCAATCAGCTTCTCCGACGATGCTGCCTCAGCGAAGAAAAATGTGG
* * * *
2091947 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTG
583 CACCAGCACATGCCCGAGCACAGCATGTGCTACCGCAACCATCGATCCAGTCCGATCTTAGACTG
* * * * *
2092012 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGA
648 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGA
* *
2092077 ACGTGCAGGCACTCAGCCGGCCCGAGGATCGGTCGGGTCCCCCACTATGTGATGCCAATCCTGCT
713 ACGTGCAGGCACTCAGCCGGCCCGAGGATCGATCGGGTCCCCCACTAGGTGATGCCAATCCTGCT
**** **
2092142 GGTGTAACCCTCAGTCTGGTCCGATCTTAGACTAGGAACAAACTCCGTATGCCTAAGCCAACCAA
778 ACCATAACCCTCAGTCCAGTCCGATCTTAGACTAGGAACAAACTCCGTATGCCTAAGCCAACCAA
2092207 CGACACGAGCGGGTGGGC
843 CGACAC-A--------GC
*
2092225 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTT
1 -GGCAC-ACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
2092290 TAGATACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGT
63 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* ** *
2092355 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTGTATTTTTCACGA-CTTTCA
128 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCA-TTTTCACCATCTTTCA
** * * *
2092419 AAACTTTTTGTGGTTTGGGATTTTGTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTA
192 AAA-TTTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTA
* * * * **
2092484 GATGTGATCCTTGTATTTCTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTCT-AACTGTAC
256 AACGTGATCCTTGCATTT-TTGTTGGCATGCACAAAAAAAGGCAGCTAAAAACT-TGAACTGTAC
* * *
2092547 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACCCTTTAATGGCTACTGGCAGCA
319 AAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAACA
* *
2092611 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATAAGGGATAGGG
384 AACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGG
* *
2092676 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACACA-CCCCCGGCCCC-C
449 GGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACACACACCCCCCGGCCCCTC
* * ** * * * *
2092739 TCGATCGT-CGTAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCT-CC-GA-CGAAGAAAA
514 T-AATC-TCCGGAACCCCAATGCCGCCAATCAGCTTCTCCGACGATGCTGCCTCAGCGAAGAAAA
* *
2092800 ATGTGGCATCAGCACATGCCCGAGCACAGCATGTGCTACCGCAACCATCGATCCGGTCCGATCTT
577 ATGTGGCACCAGCACATGCCCGAGCACAGCATGTGCTACCGCAACCATCGATCCAGTCCGATCTT
*
2092865 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTACGTCAAACCACG
642 AGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACG
* * * *
2092930 AAACGAGCGTGCGGGCGCTCAGTCGGCCAAGGGGACGGGATGCGCAAGCCGGGGATCGATCGGGT
707 AAACGAACGTGCAGGCACTCA----G-C-------C-----G-GC---CCGAGGATCGATCGGGT
* * * *
2092995 CCCCCTCTAGGTGCTGCCAATCCTGCTACCATAACCCTCAGTCCAGTCTGATCTTAGACTGGGAA
751 CCCCCACTAGGTGATGCCAATCCTGCTACCATAACCCTCAGTCCAGTCCGATCTTAGACTAGGAA
** ** *
2093060 TGAACTCCGTATGCCTAAGCCAACTGATGA-A-A-C
816 CAAACTCCGTATGCCTAAGCCAACCAACGACACAGC
* * * *
2093093 -G-A-GCG-GGCCA-AGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGCAGG-GGGTTTAG
1 GGCACACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
2093152 GCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTTTCCC
66 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
2093217 TTAAGCCTTC-TCGAGAAGTGTCATGGCAAGACGACTCATTTTC
131 TTAAGCCTTCAT-GTGAAGTTTCATGGCAAGACGACTCGTTTTC
2093260 TCCGACGATG
Statistics
Matches: 900, Mismatches: 106, Indels: 61
0.84 0.10 0.06
Matches are distributed among these distances:
858 1 0.00
859 246 0.27
860 38 0.04
861 9 0.01
862 46 0.05
863 4 0.00
864 308 0.34
865 143 0.16
866 4 0.00
868 1 0.00
871 1 0.00
876 1 0.00
877 3 0.00
879 1 0.00
880 94 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (851 bp):
GGCACACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTCACCATCTTTCAAAAT
TTTTACGGTTCGAGATTTTGTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAAACGT
GATCCTTGCATTTTTGTTGGCATGCACAAAAAAAGGCAGCTAAAAACTTGAACTGTACAAGATTT
TGTAACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
AAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAAC
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACACACACCCCCCGGCCCCTCTAATCTC
CGGAACCCCAATGCCGCCAATCAGCTTCTCCGACGATGCTGCCTCAGCGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCACAGCATGTGCTACCGCAACCATCGATCCAGTCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAACG
TGCAGGCACTCAGCCGGCCCGAGGATCGATCGGGTCCCCCACTAGGTGATGCCAATCCTGCTACC
ATAACCCTCAGTCCAGTCCGATCTTAGACTAGGAACAAACTCCGTATGCCTAAGCCAACCAACGA
CACAGC
Found at i:2094249 original size:26 final size:26
Alignment explanation
Indices: 2094220--2094270 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2094210 TCGGTCTGAT
*
2094220 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2094246 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2094271 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2096044 original size:26 final size:26
Alignment explanation
Indices: 2096015--2096093 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
2096005 CCAGTCCGAT
*
2096015 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2096041 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2096067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2096093 C
1 C
2096094 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2097895 original size:108 final size:108
Alignment explanation
Indices: 2097706--2097912 Score: 299
Period size: 108 Copynumber: 1.9 Consensus size: 108
2097696 CGGTCAGGTT
* * * * * *
2097706 CCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGGATGTGCTATCGCAACCGTTG
1 CCCCGATGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* *
2097771 GTCTGGTCCAATCTTAGGCTGGGAATGAACTCCGATGATGGTA
66 GTCTGATCCAATCTTAGACTGGGAATGAACTCCGATGATGGTA
*
2097814 CCCCGATGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
1 CCCCGATGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* *
2097879 AT-TCGATCCGATCTTAGACTGGGAATGAACTCCG
66 GTCT-GATCCAATCTTAGACTGGGAATGAACTCCG
2097913 TATGCTTAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
107 1 0.01
108 86 0.99
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (108 bp):
CCCCGATGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
GTCTGATCCAATCTTAGACTGGGAATGAACTCCGATGATGGTA
Found at i:2097920 original size:26 final size:26
Alignment explanation
Indices: 2097891--2097942 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2097881 TCGATCCGAT
*
2097891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2097917 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2097943 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2101363 original size:26 final size:26
Alignment explanation
Indices: 2101334--2101386 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2101324 TCAATCCGAT
2101334 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2101360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2101386 C
1 C
2101387 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2102257 original size:26 final size:26
Alignment explanation
Indices: 2102221--2102273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2102211 CTGGCCCGAT
* * *
2102221 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2102247 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2102273 C
1 C
2102274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2103387 original size:25 final size:25
Alignment explanation
Indices: 2103331--2103388 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
2103321 TATTTTTCAT
* *
2103331 GATTTTTGAAAATTTTTTTGGTTAGG
1 GATTTTTGAAAATTTTTTCGG-TAAG
*
2103357 GATTTTTTAAAATTTTTTCGG-AAG
1 GATTTTTGAAAATTTTTTCGGTAAG
2103381 GATTTTTG
1 GATTTTTG
2103389 GCCCCAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 9 0.32
26 19 0.68
ACGTcount: A:0.24, C:0.02, G:0.21, T:0.53
Consensus pattern (25 bp):
GATTTTTGAAAATTTTTTCGGTAAG
Found at i:2103813 original size:26 final size:26
Alignment explanation
Indices: 2103777--2103829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2103767 CTGGCCCGAT
* *
2103777 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2103803 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2103829 C
1 C
2103830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2104864 original size:26 final size:26
Alignment explanation
Indices: 2104835--2104913 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2104825 CCGATTCGAT
*
2104835 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2104861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2104887 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2104913 C
1 C
2104914 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2105019 original size:211 final size:212
Alignment explanation
Indices: 2104650--2105085 Score: 626
Period size: 211 Copynumber: 2.1 Consensus size: 212
2104640 CCAGTCCGAT
* *
2104650 CTTAGACTGGGAATGAACTCCGAATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGAATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * *
2104715 ACAAAACGAACGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCG
66 ACAAAACGAACGGGCGAGCACTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGGGATCGGCCG
* * * *
2104780 GGTCCCCCTCTGCGTGTTGCCAATCCTACTGCCGCAACCCT-TGATCCGAT-TCGATCTTAGACT
131 GGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCAG-TCCGGTCT-GATCTTAGACT
* *
2104843 GGGAATGAACTTCGTATG-
194 GCGAATGAACTCCGTATGC
* *
2104861 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGAATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * *
2104926 ACGAAACGAGCGGGCGGGCACTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGGTCGGCCG
66 ACAAAACGAACGGGCGAGCACTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGGGATCGGCCG
* *
2104991 GGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGC
131 GGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGC
2105056 GAATGAACTCCGTATGC
196 GAATGAACTCCGTATGC
*
2105073 CTAAGACTGGGAA
1 CTTAGACTGGGAA
2105086 GACGACTCAT
Statistics
Matches: 199, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
211 185 0.93
212 14 0.07
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (212 bp):
CTTAGACTGGGAATGAACTCCGAATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
ACAAAACGAACGGGCGAGCACTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGGGATCGGCCG
GGTCCCCCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGC
GAATGAACTCCGTATGC
Found at i:2106199 original size:886 final size:879
Alignment explanation
Indices: 2102906--2107847 Score: 4734
Period size: 886 Copynumber: 5.6 Consensus size: 879
2102896 TCGAGGTTTG
* * * * *
2102906 ATGAACTCCATTTGCGTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCA
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * ** *
2102971 TGTGGGTGCTCAGCCGCCCAGACGGGCGAGATGCGAAAGCCGAGGATCGGCTGGGTCTGCCTCTA
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
**** * * * * * *
2103036 CGTGCTATTGATCCTGCTACCGCAACCCTCGATCCGATCAGATCTTACACTGGGAATGAACTCCG
131 CGTGCTGCCAATCCTACTGCCACAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCG
* * * * * *
2103101 TATGCCTAAGCCAACCGACGAAATGAGCGGACGGGTAGGCGGGCGGGCACTACGTCAGCTAGATA
196 TATGCCTAAGCCAACCGACGAAACGAGCGGA--GG--GGAGGGCGGGCACTACGCCGGCCAGAGA
* * * *
2103166 GACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTTATATTTCT
257 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
2103231 GCATGCTAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
322 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** *
2103296 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTTTGGTTAGGGATT
387 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATT
2103361 TTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
452 TTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
2103426 TGGCATGCACGAAAAAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
517 TGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
2103491 AGTGTCCCCATTTTAGACACTTTAATGGCTACTAGG-AGCAAACCTGTAAAATCTCAAATGCTCT
581 AGTGTCCCCATTTCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
2103555 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT-A-----AAG--GCA
645 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
2103612 GCACCCATCGTACATCATGTGAGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCTAACGCCGC
710 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGC
* * * *
2103676 CAGTAAGGTTCTCCGGTGATGGTGCCCCG-GGAAAGAAAAATACGACACCAGCACATGCCCGAGC
775 CGGTCAGGTTCTCCGGTGATGCTGCCCCGATG-AAGAAAAATACGACACCAGCACATGCCCGAGC
* * **
2103740 CCAGCATGTGCTGCCGTAACCCTCAGTCTGGCCCGATCTTAGACTGGGA
839 CCAGCATGTGCT---G----CC-CGGTCCGATCCGATCTTAGACTGGGA
* *
2103789 ATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * ** *
2103854 TGCAGGTGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGCAT-CCCCTTTT
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
* * * * ** * * * *
2103918 GTGTGCTGCCGATCCTGCTACTGCAA-CCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTC
131 -CGTGCTGCCAATCCTACTGCCACAACCCTT-GATCCGATCTGATCTTAGACTGGGAATGAACTC
* * * * *
2103982 CGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGAGTAGGCGGGCACTACGCTGACCAGA
194 CGTATGCCTAAGCCAACCGACGAAACGAGC-GGAGGG-GAG--GGCGGGCACTACGCCGGCCAGA
* * * *
2104047 GAGACGAGATGCGCAATCTGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTT-ATATTT
255 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** *
2104111 CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGA
320 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * * **
2104176 AGTTTCATGGCAAGATGACTCGTTTACTTTTTTTCTCGATTTTTAAAACTTTTTGCGGTTCAAGA
385 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA
*
2104241 TTTTTTAAAATTTTGTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
450 TTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
2104306 TTTGGAATGCA-ATAAAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTGT-ACCCATTTGAA
515 GTTGGCATGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CCATTTGAA
2104369 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCGAGCAAACCTGTAAAATCTCAAATGC
578 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGC
*
2104433 TCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
642 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
2104498 CCAGCACCCAACGCACATCAAGTGCGCACACCCCCCAGCCCCCTCGATCACCGGAACCCCAATGT
707 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * ** *** * * *
2104563 CGCCGGTCAGGTTCTCCGGCGATGCT-CCGACGATGGTGCCCCAGTGAAGA-A--A--A-AT--A
772 CGCCGGTCAGGTTCTCCGGTGATGCTGCC-CCGATGAAG-AAAAAT-ACGACACCAGCACATGCC
* **
2104619 CG-GCACCGGCACATGCT---CGGTCC-AGTCCGATCTTAGACTGGGA
834 CGAGC-CCAGCATGTGCTGCCCGGTCCGA-TCCGATCTTAGACTGGGA
* * * * *
2104662 ATGAACTCCGAATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAACG
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * *
2104727 TGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
* * *
2104792 CGTGTTGCCAATCCTACTGCCGCAACCCTTGATCCGAT-TCGATCTTAGACTGGGAATGAACTTC
131 CGTGCTGCCAATCCTACTGCCACAACCCTTGATCCGATCT-GATCTTAGACTGGGAATGAACTCC
* ** * ** * ** * *** * *
2104856 GTATGCTTAGACTGGGAA-TGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGC-CTAAG
195 GTATGCCTA-A--GCCAACCG-A---CG-AAAC-GAG-C--GGAGGGGAGGGCG--GGCACTACG
*** * * *
2104919 TCAACCCACGAAACGAGCGGGCGGGCACTCAGCCGGCCAGAGGGGCG-GGATACGCA-AGCCGGG
246 -CCGGCCA-G--A-GA---GACGGG-A-T--G-C-G-CA-A--GCCGTGGAT-CG-ATAG--GGT
* * * * * * * * * * * * *** **
2104982 GGTCGGCCGGG--T--CCCCCTCTGCGTGCTGTCGATCCTACTGCCACA-ACCCTCAGTCCGG-T
289 GGTAGG-TGGGTTTAGGCACATCTTCAT-ATTTC--TGC-A-TGCCA-ATGCCATTTTTATGGCT
** * * ** * * * * *
2105041 CTG-ATCTTAGACTGCGAATGAACTCCGT-A---TGC-C-T-AAG--AC-TGGGAAGACGACTCA
347 -TGTAAATT-CA-TAC-AATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
2105095 TTTTCCATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAAATTTTTT-GGAA
407 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTCGGAA
* * * *
2105159 GGAGTTTTGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATT
471 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATT
*
2105224 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
535 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
2105289 CTTTAATGGCTACTGACGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTC
600 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
2105354 GAGGTTTCATGGGGGATAGGGGCCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGT
665 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
2105419 GCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGA
730 GCGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
* *
2105484 TGCTGCCCCGATGAAGAAAAATACGACACCAGCACATGCTCGAGCCAAGCATGTGCTGCCGCGGT
794 TGCTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-CGGT
*
2105549 CCGATCCGATATTAGACTGGGA
858 CCGATCCGATCTTAGACTGGGA
* *
2105571 ATGAACTCTGTATGCTT-GCACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT
1 ATGAACTCCGTATGCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
2105635 GTGCGGGAGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCT
65 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
* ** * * * *
2105700 TCGTACTGCTGATCCTGCTGCCTCAACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCC
130 TCGTGCTGCCAATCCTACTGCCACAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCC
* * * *
2105765 ATATGCCTAAGCCAATCGACGAAACGAGCGGATGGGAAGAGGGCAGGCACTACGCCGGCCATAGA
195 GTATGCCTAAGCCAACCGACGAAACGAGCGGA-GGG--GAGGGCGGGCACTACGCCGGCCAGAGA
* * * *
2105830 GACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCAAATCTTCATATTTTT
257 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
2105895 GCATGCCAATGCCATTTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAA
322 GCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
** * * *
2105960 GTTTCATGGCAAGGTGACTCGTTTTCAATTTTTCACGATTTTTGAAACTTTTTGCGATTCGTGAT
386 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGAT
* * *
2106025 TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACCTAGTAGACGTGATCCTTATATTTTTG
451 TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
2106090 TTGCCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
516 TTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
*
2106155 AAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
580 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
2106220 TTAAGGGGGTGTGAGTTCTCAAGGTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
645 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * * *
2106285 GCACCCAACGCACATCAAGTGTGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCG
710 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG
*
2106350 CCGGGTCAGGTTCTCCGACGATGCTCCGACGATGCTCCGACGATGGTGCCCGGGAGAAGAAAAAT
774 CC-GGTCAGGTTCTCCG--G-TGAT--G-C--TGC-CC--CGA---T--------GAAGAAAAAT
* * *
2106415 ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG-CC-GT---AACC---C-T---C--GGA
816 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCGGTCCGATCCGATCTTAGACTGGGA
* *
2106465 CTG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * *
2106526 TGCGAGCGCTCAACCAGCCCGAGGGGCGGGATGTGCACGCCGGGGATCGGTCAGGTCCCCCTCTG
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
* * *
2106591 CGTGTTGCCAATCCTACTGCCACAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
131 CGTGCTGCCAATCCTACTGCCACAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCG
* ** * * * * * *
2106656 TATGCCTAACCCAACTAACGAAACGAGC-GAGCCGGCGGGCAGACACTACGTCGGCCAGGGAGAC
196 TATGCCTAAGCCAACCGACGAAACGAGCGGAG-GGGAGGGCGGGCACTACGCCGGCCAGAGAGAC
* **
2106720 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGTG
260 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
2106785 TGCCAATGCCATTTTTATGGCTTGTAAATTGATACAACGGTCCCTTAAGCCTTCACGTGAAGTTT
325 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * ** * *
2106850 CATGTCAAGACGACTCGTTTTATATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTT
390 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * ** *
2106915 TAAATTTTTTTCCGAAGGATTTTTGG-AACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
455 TAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
2106979 CATCCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA-TTT-TG------TG-----A--
520 CATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
2107029 ----CCATTTCAGACACTTTAATTGCTACTGGCAGGAAACCTGTAAAATCTTAAATGCTATTTAA
584 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
2107090 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCAC
649 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG---
* * * * *
2107155 CAATCGCACATCGTACATCATGTGCGCACACCCCCCGGCCCGCCCGATCACCGAAACCCCAATAC
711 C-A-C-C-CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * * * *
2107220 CGCCGGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGGTGACGAAAAATACGGCACTAG
772 CGCCGGTCAGGTTCTCCGGTGATGCT--G-C-------CCC-GATGAAGAAAAATACGACACCAG
* * *
2107285 CACATGCCCGAGCCCAGCATGTGCTGACCACAACCCTCGGTCTGGTCCGATCTGAGACTGGGA
826 CACATGCCCGAGCCCAGCATGTGCTG--------CC-CGGTCCGATCCGATCTTAGACTGGGA
* * *
2107348 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAATGAGCG
1 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * ** * *
2107413 TGCGGGCGCTCAGCCGGCCAGAGGGGTGCGATGCACAAGTCGGGGAACGGTTGGTTCCCTCT-TT
66 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
* * * * * *
2107477 GCATGCTGCCAATCCTACTGCCACAACCCTCT-CTCTGGT-TGGATCTTAGCCTGGGAATGAAGT
131 -CGTGCTGCCAATCCTACTGCCACAACCCT-TGATCCGATCT-GATCTTAGACTGGGAATGAACT
*
2107540 CCGTATGCCTAAGCCAACCGACGAAACGAGC--------GGGCGGGCACTACGACGGCCAGAGAG
193 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGGGGAGGGCGGGCACTACGCCGGCCAGAGAG
* * *
2107597 ACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
258 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
2107662 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
323 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
** * * **
2107727 TTCATGGCAAGAC-ACTCGTTTTCTATTTTTCTTGATTTTTGAAAGTTTTTTCGGTTTTGGATTT
388 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTT
* * ** * *
2107791 TTTAAAATTTTTTTGGAAGGAGTTTTGGTGCCAAACTTGGTAGATGTG-TCGTTGTAT
453 TTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
2107848 GTTCATGCCC
Statistics
Matches: 3329, Mismatches: 529, Indels: 407
0.78 0.12 0.10
Matches are distributed among these distances:
860 43 0.01
863 1 0.00
865 2 0.00
866 118 0.04
868 3 0.00
869 3 0.00
870 3 0.00
871 17 0.01
872 37 0.01
873 198 0.06
874 13 0.00
875 1 0.00
876 6 0.00
877 10 0.00
878 84 0.03
879 184 0.06
880 22 0.01
881 167 0.05
882 220 0.07
883 270 0.08
884 18 0.01
885 85 0.03
886 471 0.14
887 291 0.09
888 3 0.00
889 36 0.01
890 234 0.07
891 9 0.00
892 12 0.00
893 3 0.00
894 6 0.00
895 6 0.00
896 6 0.00
897 109 0.03
898 225 0.07
899 72 0.02
900 16 0.00
901 13 0.00
902 8 0.00
903 13 0.00
904 14 0.00
905 13 0.00
906 13 0.00
907 5 0.00
908 3 0.00
909 241 0.07
910 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTT
CGTGCTGCCAATCCTACTGCCACAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGCGGAGGGGAGGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
AAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
GGTTCTCCGGTGATGCTGCCCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCCGGTCCGATCCGATCTTAGACTGGGA
Found at i:2106378 original size:11 final size:11
Alignment explanation
Indices: 2106362--2106394 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2106352 GGGTCAGGTT
2106362 CTCCGACGATG
1 CTCCGACGATG
2106373 CTCCGACGATG
1 CTCCGACGATG
2106384 CTCCGACGATG
1 CTCCGACGATG
2106395 GTGCCCGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:2108824 original size:26 final size:26
Alignment explanation
Indices: 2108773--2108824 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2108763 CCGGTTTGAT
* *
2108773 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2108799 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2108825 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2109707 original size:25 final size:25
Alignment explanation
Indices: 2109679--2109726 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
2109669 TCTGATCTTA
2109679 GACTGGGAATGAAC-TCTGTATGCTT
1 GACTGGGAATGAACTTCT-TATGCTT
2109704 GACTGGGAATGAACTTCTTATGC
1 GACTGGGAATGAACTTCTTATGC
2109727 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (25 bp):
GACTGGGAATGAACTTCTTATGCTT
Found at i:2109715 original size:901 final size:896
Alignment explanation
Indices: 2107898--2110802 Score: 4055
Period size: 901 Copynumber: 3.2 Consensus size: 896
2107888 TCAAGTCGAT
* * * *
2107898 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGGTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
2107963 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCT-GCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATC-GATC
* * * *
2108027 TTGCTGTCACAACCCTCGGTCCGATTGGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCA
130 TTGCTGCCACAACCCTCGGTCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
2108092 ACCGATGAAACGAGCTGGCGGGCGAGCGGGCAATATGCCGGCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
2108157 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
2108222 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
2108287 CCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAACTTTTTTCG
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCG
* * * * *
2108352 GAAAGAGTTTTGGCCCTAAACTTGGAAGACATGATCCTTATATTTTTGTTGGTATGCACAAAAAA
454 GAAGGAGTTTTGGCCC-AAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAA
* * *
2108417 ATTCAGCTAAAAACTCGGACTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAA
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
2108482 ACAATTTAATGGCTGCTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
2108547 CTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
2108612 TGTGCGCACACCCCCTCGGTCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTTCGG
713 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC-TCGATCAGGTTC-TC-G
* * * * *
2108677 TGATGCTCCGGTGATGATGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCA
775 AGATGCTCCGGCGATGATGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
2108742 TGTGCTGTCGCAACCCTCAGTCCGGTTTGATCTTAGACTAGGAATGAACT-TCGTATG
840 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATG
* * * * * **
2108799 CTTAGACTAGGAATGAACTCCATATGGCTAAGTCAACCCACAAAATGAGCGCACGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
2108863 CTGGCCAGAGGGGCGGGATGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTACGTGCTATCGATC
66 C-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGAT-
* * * *
2108928 CTT-CTGTCATAACCCTCGGTTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTTGCTGCCACAACCCTCGGTCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
2108992 AATCGACGAAATGAGCAGGCGGGCGGGCAGGCACTACGTCGGCCATAGAGACGGGATGTGCAAGC
194 AACCGACGAAACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
2109057 CGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
2109122 TTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
*
2109187 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
2109252 GAAGGAGTTTTTGCCACAAACTTGGTGGACGTGATCCTTGTATTTTTATTTGCATGCACAAAAAC
454 GAAGGAGTTTTGGCC-CAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAA
* * *
2109317 ATTCGGCTAAAAACAT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTGA
518 ATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
2109381 AACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGT
582 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
2109446 TCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTTCTAGCACCCAGT-GCACAT
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACAT
* *
2109510 CATGTGCGCACACCACCCCCTGGCCCCCCCGATCGGCGGAACCCCAACGCCATCGATCAGGTTCT
711 CATGTGCGCACACC-CCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCC-TCGATCAGGTTCT
* *
2109575 CCGACGATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
773 -CGA-GATGCTCCGGCGATGATGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
*
2109640 AGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
836 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* * *
2109701 CTT-GACTGGGAATGAACTTCTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
2109765 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCT
* * * *
2109830 TGCTGCCGCAACCCTCAGT-TCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGGTCTGA-TCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
2109894 ACCGACGAAACAAGACAGAGGGCGGGCGCGCGGGCACCACGCCGGCCAGAGAGACGGG-TGCCCA
195 ACCGACGAAACGAG-C--A-GGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
2109958 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
2110023 ATTTTTCTGGCTTTTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
2110088 CGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTCCGGTTCAAGATTTTTTAAAATTTTG
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
2110152 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAA
451 TCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAA
2110217 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* ** *
2110282 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTTTCTTTAAGGGGTTGTGA
580 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
2110347 GTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
2110412 TCATGTGCGCACACCCGTCCCCCGGCCCCCCCGATCGCCGAAACCCCAATG--TCG--CCGG---
710 TCATGTGCGCACA-CC--CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCTCGATCAGGTTC
* * * * *
2110470 TC-AGGTTCTCCGGCAATGATGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAACCCA
772 TCGAGATGCTCCGGCGATGATGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * ** *
2110534 GCATGTGTTGCTGTAAACCTAGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
837 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* *
2110594 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * ** *
2110659 CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCT
* * *
2110724 TGCTACCGCAACCCTCGGTCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCACAACCCTCGGTCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
2110789 CCCATGAAACGAGC
196 CCGACGAAACGAGC
2110803 GCGTGGGCGT
Statistics
Matches: 1779, Mismatches: 200, Indels: 58
0.87 0.10 0.03
Matches are distributed among these distances:
893 108 0.06
894 180 0.10
895 3 0.00
896 1 0.00
899 3 0.00
900 252 0.14
901 575 0.32
902 157 0.09
903 282 0.16
904 180 0.10
905 38 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCT
TGCTGCCACAACCCTCGGTCTGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCTCGATCAGGTTCTCGAGATGC
TCCGGCGATGATGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
Found at i:2110604 original size:26 final size:26
Alignment explanation
Indices: 2110568--2110620 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2110558 CTGGTCCAAT
2110568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2110594 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2110620 C
1 C
2110621 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2110892 original size:159 final size:159
Alignment explanation
Indices: 2110594--2110957 Score: 460
Period size: 159 Copynumber: 2.3 Consensus size: 159
2110584 ACTCCGTATG
* * *
2110594 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGCGCGGGCGCTCAGC
* * *
2110659 CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGAGCTGCCAATCC
* * *
2110724 TGCTACCGCAACCCTCGGTCTGATCGGAT
131 TACTACCGCAACCCTCGGCCTGATCCGAT
* * * *
2110753 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGTGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGCGCGGGCGCTCAGC
* * * * * *
2110818 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATC-GATCGGGTCGCCCTCTGTGAGTTGCCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAG-CCGGGTCCCCCTCTGCGAGCTGCCAATC
* * * *
2110882 CTATTGCCGCAACCCTTGGCCTGGTCCGAT
130 CTACTACCGCAACCCTCGGCCTGATCCGAT
* * * * *
2110912 CTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAATCGACGAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
2110958 TAGCAGGCGG
Statistics
Matches: 175, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
158 1 0.01
159 174 0.99
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGCGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCCGGGTCCCCCTCTGCGAGCTGCCAATCC
TACTACCGCAACCCTCGGCCTGATCCGAT
Found at i:2112507 original size:903 final size:898
Alignment explanation
Indices: 2110753--2113341 Score: 3519
Period size: 903 Copynumber: 2.9 Consensus size: 898
2110743 CTGATCGGAT
* *
2110753 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GCGTGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAGC--GGGCGTTCAG
* * *
2110817 CCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGATCGGGTCGCCCTCTGTGAGTTGCCGATC
64 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-GGTC-CCCTCTGCGTGTTGCCGATC
** * * * * *
2110882 CTATTGCCGCAACCCTTGGCCTGGTCCGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCA
127 CTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
2110947 ATCGACGAAACTAGCAGGCGGGCAGGCGGGCGGGCACTATGCCAGCCAGAGAGATGGGATGTC-C
192 A-CGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG-CGC
* * * *
2111011 AAGCCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTGTGCATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
2111076 CATCTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
2111141 ATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTGTTGCAGTTCGAGG-TTTTTTAAAATTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT-TTGCGGTTCG-GGATTTTTTAAAATTT
* * * * * *
2111205 TTTCGGAAGGATTTTTGTCCCAAAACATGGTAGACATGATCCTTGTATTTTTATTGGCACGCACA
448 TTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACA
* * *
2111270 AAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGAGCATTTGGAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
2111335 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAA-GGGGTGT
* *
2111400 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
2111465 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTC
707 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** * *
2111529 TCCAACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCC
772 TCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACAAGCACATGCCCGAGCC
* * * *
2111594 AATCATGTGCTACTGTAAACCTCTGTCCGATGTGATCTTAGACTGGGAATGAA-CTCTGCATG
837 AATAATGTGCTACTGCAAACCTCGGTCCGATGTGATCTTAGACTGGGAAAGAATCTC-GCATG
* * * * * * *
2111656 CTTAGACTGGAAATGAACTCCGTTTGCCTAAGTTAACCCACGAAATGAGCATGCAGGTGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCA-GCGGGCGTTCAGC
* * * * *
2111721 CGGCCAGAGGGGCGAGATGCGGAAGCCGAGGATCGATCGGTTCCCCATCTGCGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGG-TCCCC-TCTGCGTGTTGCCGATCC
* *
2111786 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAA
128 TGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2111851 CCGACGAAACGAGTGGGCGGACAGGCGGGCGGGCACTACATTGGCCAGAGAGACGGGATGCGCAA
193 -CGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
2111916 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
2111981 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
2112046 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGTGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT-TGCGGTTCGGGATTTTTTAAAATTTTTT
* *
2112111 TGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
451 TGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAA
* * * *
2112176 AAATTGAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
2112241 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTGAAGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTT-AAGGGGTGTGAG
* ** *
2112306 TTCTCAACATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACA-CTGCACA
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACA
* **
2112370 TCAAGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
709 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
2112435 CGGCGATGCTCC-GTGATGGTGCCTCGGTGAAGAAAAATACGGCACAAGCACATGCCCGAGCCCA
774 CGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACAAGCACATGCCCGAG-CCA
* * * * * * *
2112499 A-AATGTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAAAGAATTTCGTATG
838 ATAATGTGCTACTGCAAACCTCGGTCCGATGTGATCTTAGACTGGGAAAGAATCTCGCATG
* *
2112559 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACTAAATGAGCGAGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC-AGCGGGCGTTCAGC
* * * * *
2112624 CGACCAGAGGGGTGGGATGCGCAAGTAGGGGATCGACCGAGTCCCCCTTTGCGTGTTGCCGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCG-GT-CCCCTCTGCGTGTTGCCGATCC
** * * * *
2112689 TGCTGCCACAATTCTTGATCTGGT-TCGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGGCA
128 TGCTGCCACAACCCTTGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2112753 ACGTACCAAATGAACGGGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
192 ACG-ACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
2112818 AGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
2112883 ATTTTTATGGCTTCTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCACGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
2112948 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTACGGTTCGAGATTTATGAAAA-TTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * * *
2113012 TCGAATAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCTTGCACAAA
451 TGGAA-GGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
* * *
2113077 AGAATTCAGCTAAAAACTCGAAGTATGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTT
515 AAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
2113142 CGGACACTTTAATAGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGA-
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAG
* *
2113206 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAACAGTACCAGCACCCATCGCAC
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-A-AGTACCAGCACCCATCGCAC
* * * * * *
2113271 ATCACTGTGCGAAGACCCCCCC-GACCCCCCGATCGTCGGAAAACTCTAATGCCCGCCGGTCACG
708 ATCA-TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGG--AACCCCAATG-CCGCCGGTCAGG
2113335 TTCTCCG
769 TTCTCCG
2113342 CGGCGATGGT
Statistics
Matches: 1484, Mismatches: 177, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
900 37 0.02
901 21 0.01
902 226 0.15
903 1100 0.74
904 80 0.05
905 20 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAGCGGGCGTTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGTCCCCTCTGCGTGTTGCCGATCCTGC
TGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGA
CGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA
GGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACAAGCACATGCCCGAGCCAATAATGTG
CTACTGCAAACCTCGGTCCGATGTGATCTTAGACTGGGAAAGAATCTCGCATG
Found at i:2112569 original size:26 final size:26
Alignment explanation
Indices: 2112533--2112585 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2112523 CTGGTTTGAT
* *
2112533 CTTAGACTGGGAAAGAATTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
2112559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
2112585 C
1 C
2112586 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:2116212 original size:866 final size:864
Alignment explanation
Indices: 2114521--2117070 Score: 3654
Period size: 866 Copynumber: 2.9 Consensus size: 864
2114511 ACTCCGTTTG
* * *
2114521 CTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
2114586 -CGCCTAGACGGGCGGGATGCGAAATCCATGGATTGGCTGGGTCCCCCTCTACGTGCTACTGATC
66 AGGCC-AGAGGGGCGGGATGCGAAAGCCAGGGATCGGCTGGGTCCCCCTTTGCGTGCTACCGATC
* * *
2114650 CTACTGCCGCAACCCTCGATCCAGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * * * * * * **
2114715 ACCGACGAAATGAGCGGGCAGGTAGGCGGGCTGGCACTACGTCAGCCAGGGAGACAGGATGTAAA
195 ATCGACGAAACGAGTTGGCGGGTGGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGTGCA
* * * * *
2114780 AGTCATGGATCGTTAGGGTGGTAGGTGGGTTTTAGACACATCTTAATATTCTGCTA-TGCTAATG
260 AGCCATGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATT-T-CTAGTGCCAAT-
*
2114844 GCCAGTTTTTATGGCTTGTAAATTCATACAATGGTCCGCTTAAGCCTCCACGTGAAGTCTTCCAT
321 G-CA-TTTTTATGGCTTGTAAATTCAAACAATGGTCC-CTTAAGCCT-CACGTGAAGT-TT-CAT
* *
2114909 GGCAAGACGGACGCGTTTTCTATTTTTCATGATTTTTGGAAACTTTTT-TGG-TC-AGGATTTTT
380 GGCAAGAC-GACTCGTTTTCTATTTTTCATGATTTTT-GAAACTTTTTACGGTTCGA-GA-TTTT
* *
2114971 TTAAA-ATTTTTCGGAAGGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCCTTGTATGTTTTGT
441 TTAAACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTA-GTTTTGT
* *
2115034 TGGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGCTGGTACAGGATTTTGTGACCCCATTTG
504 T-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG-T-GTACAAGATTTTCTGA--CCATTTG
* **
2115098 AAAGAAGTGTTCGCCCATTTTCAGAGCACTTTAATGGCTACTGACAGC-AACCTGTAAAATCCTC
564 AAAAAAGTG-TC-CCCATTTT-AGA-CACTTTAATGGCTACTGGGAGCAAACCTGTAAAAT-CTC
*
2115162 AAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGC
624 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGC
2115227 CAAGTACCAGCACCCATCGCACATTATGTGCGAACAGCCCCCCCGGCCCCCCCGATCATCGGAAC
689 CAAGTACCAGCACCCATCGCACATTATGTGCGAACAGCCCCCCCGGCCCCCCCGATCATCGGAAC
**
2115292 CCCAATGTCGTTGGTCAAGTTCTCCGGCGATGGTGCCCAGGCGAAGAAAAATGCGGCACCAGCAC
754 CCCAATGTCGCCGGTCAAGTTCTCC-GCGATGGTGCCCAGGCGAAGAAAAATGCGGCACCAGCAC
* * *
2115357 ATGCCTGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCCGGTCCAAT
818 ATGCCCGAGCCCAGCATATACTGCCAG-AACCCTCGGTCCGGTCCAAT
* *
2115404 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
2115469 AGGCCAAAGGGGCGGGATGCGCAAGCCAGGGATCGG-TCGGGTCCCCCTTTGCGTGCTGCCGATC
66 AGGCCAGAGGGGCGGGATGCGAAAGCCAGGGATCGGCT-GGGTCCCCCTTTGCGTGCTACCGATC
* * *
2115533 CTACTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCA
130 CTACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2115598 ATCGATGAAACGAGTTGGCGGGCGGGCGAGCGGGCACTACACCGGCTAGAGAGACGGGATGCGCA
195 ATCGACGAAACGAGTTGGCGGGTGGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGTGCA
*
2115663 AGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCA
260 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-GTGCCAATGCA
*
2115728 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAG-CCTCACGTGAAGTTTCATGGCAAGAC
* *
2115793 GACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGACTTTTTAAACTTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTT
2115858 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAA
453 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAA
**
2115923 AAATTCAGCTAAGCACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGT-CCCATTTT
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTT
*
2115987 AGACACTTTAATGGGTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
2116052 TTCTAGAGGTTTGATGAGGGATAAGGGGCCAATATGAGGGCTAAGTACCAGCACCCATCGCACGT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACAT
* *
2116117 TATGTGCGAACAGCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGCCGGTCAAGTTCTC
713 TATGTGCGAACAGCCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAAGTTCTC
* * * *
2116182 CTGTGATGGTGCCCGGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCGTATACTGC
778 C-GCGATGGTGCCCAGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATACTGC
*
2116247 CAGAACCCTCGGTCTGGTCCAAT
842 CAGAACCCTCGGTCCGGTCCAAT
*
2116270 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
2116335 AGACCAGAGGGGCGGGATACGTAAGCCAGGGATCGGCTGGGTCCCCCTTTGCGTGCTACCAATCT
66 AGGCCAGAGGGGCGGGATGCGAAAGCCAGGGATCGGCTGGGTCCCCCTTTGCGTGCTACCGATCC
* * * *
2116400 TGCTGCCGCAACCCTCTGTCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAG
131 TACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
2116465 TCGACGAAACGAGTTGGCGAGTGGGCGGGCGGGCACTACATAGGCTAGAGAGACGGGATGTGCAA
196 TCGACGAAACGAGTTGGCGGGTGGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGTGCAA
*
2116530 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCAT
261 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-GTGCCAATGCAT
*
2116595 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAA-GCCTCACGTGAAGTTTCATGGCAAGACG
** *
2116660 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAATTTG-GCATTTTTTAAACTTTTTT
389 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAACTTTTTT
* *
2116724 CGAAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGCCATGCACAAAA
453 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAA
* *
2116789 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTAACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTT
* *
2116854 AGACACTTTAATGGCCACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
583 AGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
2116919 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATC-CACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * * *
2116983 TACATGCGTACAGCGCCCTC-GCCCCCCCGATCATCGGAACCCCAATGCCACCGGTCAAGTTCTC
713 TATGTGCGAACAGCCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAAGTTCTC
* *
2117047 CGACGATGGTGCCCCGGTGAAGAA
778 CG-CGATGGTGCCCAGGCGAAGAA
2117071 CCCCGTATGC
Statistics
Matches: 1509, Mismatches: 140, Indels: 54
0.89 0.08 0.03
Matches are distributed among these distances:
864 1 0.00
865 59 0.04
866 794 0.53
867 143 0.09
868 8 0.01
870 1 0.00
871 15 0.01
873 14 0.01
874 20 0.01
875 67 0.04
876 44 0.03
877 20 0.01
878 16 0.01
879 34 0.02
880 5 0.00
881 2 0.00
882 25 0.02
883 238 0.16
884 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (864 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
AGGCCAGAGGGGCGGGATGCGAAAGCCAGGGATCGGCTGGGTCCCCCTTTGCGTGCTACCGATCC
TACTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
TCGACGAAACGAGTTGGCGGGTGGGCGGGCGGGCACTACATCGGCTAGAGAGACGGGATGTGCAA
GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAGTGCCAATGCATT
TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
CACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTAT
GTGCGAACAGCCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGC
GATGGTGCCCAGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATACTGCCAGA
ACCCTCGGTCCGGTCCAAT
Found at i:2117986 original size:26 final size:26
Alignment explanation
Indices: 2117954--2118006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2117944 CTAATATGAT
* *
2117954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2117980 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2118006 C
1 C
2118007 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2118812 original size:841 final size:844
Alignment explanation
Indices: 2117599--2119287 Score: 2397
Period size: 841 Copynumber: 2.0 Consensus size: 844
2117589 CACAAAAAAA
2117599 TTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAC
1 TTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAC
* * *
2117664 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
66 ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCC
* * *
2117729 CGCGGCTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
131 CGAGGCTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
* * * * * *
2117794 CGCGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATCGGTTGGCTTCTATGGC
196 CACGCACACACCCCCAGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGATAGGCTTCTACGGC
* * ** *
2117859 GATGCTCCGGCGATGGCGACCCGGTGAAGAAAAATGCGGCACCAGCACATGCTTTAGCCCAGCAT
260 GATGCTCCGGCGATGGCGACCCGGTGAAAAAAAATGCAGCACCAGCACATGCTCGAGCCCAACAT
* *
2117924 GTGCTGCCGCAACCCTCGGTCTAATATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
325 GTGCTGCCGCAACCCTCGGTCCAATATGAACTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * *
2117989 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGGTCAACCAGCTAGAG
390 GGAATGAACGCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCAGCTAGAG
* *
2118054 GGGAGGGATGCACAAGCCGGGGATCGGTCGGGTCCCTC-TCTGCGTGCTGCCAATCCTACTGCCA
455 GGGAGGGATGCACAAGCCGGGGATCGATCGGGTCCC-CATCTACGTGCTGCCAATCCTACTGCCA
*
2118118 CAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAA
519 CAACCCTCGATCCGGTCCAATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAA
** * * *
2118183 ACGAGC-GGACAGGC-G-A-GCGGGCACTACGTCGACTAGAGAGATGGGATGTGCAAGCCGTGGA
584 ACGAGCAGG-CAGGCGGCAGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
** * * *
2118244 TCGATACGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATG
648 TCGATACGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTACGTGCCAATGCCATTTTTATG
* * * * *
2118309 GCTTGTAAATTCATAGAATGGTCCCTTAAGTCTTCACGTGAAGTTTTATGGTAAGACGACTCGTT
713 GCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* **
2118374 TTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGGGATTGCTTAAAATTTTTTC-GAAGGG
778 TTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCCAGATTGCTTAAAATTTTTTCGGAA-GG
2118438 AGT
842 AGT
* * * *
2118441 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAGA
1 TTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-A
* * *
2118506 CACTTTAATGGCTGCTGGCAGCAATCCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTC
65 CACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTC
* * *
2118571 CCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCAT
130 CCGAGGCTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCAT
* * * *
2118636 GTACGCACATC-CCCCCAGG-CCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGG-TTCTCCG
195 GCACGCACA-CACCCCCAGGCCCCCCGATCGCCGGAACCCCAATGCCACCGAT-AGGCTTCTACG
* * * *
2118698 GTGATGCTCTGGCGATGGTGCCCCGGTGAAAAAAAATGCAGCACCAGCACATGCTCGAGCCCAAC
258 GCGATGCTCCGGCGATGGCGACCCGGTGAAAAAAAATGCAGCACCAGCACATGCTCGAGCCCAAC
* * *
2118763 ATGTGCTGTCGCAACCCTCGGTCCAGTTTGAACTTAGACTGGGAATGAACTCCGTATGCTTAGAC
323 ATGTGCTGCCGCAACCCTCGGTCCAATATGAACTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ** *
2118828 TGGGAATGAACGCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGTCGGCTAG
388 TAGGAATGAACGCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCAGCTAG
* ** * * * * *
2118893 AGGGGTGGGATGCTTAAGCCGGGGATCGATCGGGTCCCCATCTATGTGCTGTCGATCCTGCTGTC
453 AGGGGAGGGATGCACAAGCCGGGGATCGATCGGGTCCCCATCTACGTGCTGCCAATCCTACTGCC
* * * * * *
2118958 ACAACCCTCGATCTGGTCCGATCTTAGATTCGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
518 ACAACCCTCGATCCGGTCCAATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGA
* * *
2119023 AACGAGCAGGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGTAAGCCGTGG
583 AACGAGCAGGCAGGC-GGCAGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* **
2119088 ATCGATAGGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTGTGTGCCAATGCCATTTTTAT
647 ATCGATACGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTACGTGCCAATGCCATTTTTAT
*
2119153 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGCCGACTCGT
712 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * **
2119218 TTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCGGAAGG
777 TTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCCAGATTGCTTAAAATTTTTTCGGAAGG
2119283 AGT
842 AGT
2119286 TT
1 TT
2119288 TGGCCCTAAA
Statistics
Matches: 743, Mismatches: 94, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
840 1 0.00
841 328 0.44
842 63 0.08
843 134 0.18
844 2 0.00
845 212 0.29
846 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (844 bp):
TTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAC
ACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCC
CGAGGCTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
CACGCACACACCCCCAGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATAGGCTTCTACGGCG
ATGCTCCGGCGATGGCGACCCGGTGAAAAAAAATGCAGCACCAGCACATGCTCGAGCCCAACATG
TGCTGCCGCAACCCTCGGTCCAATATGAACTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
GAATGAACGCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCAGCTAGAGG
GGAGGGATGCACAAGCCGGGGATCGATCGGGTCCCCATCTACGTGCTGCCAATCCTACTGCCACA
ACCCTCGATCCGGTCCAATCTTAGACTAGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCAGGCAGGCGGCAGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATACGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTACGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTCAAACTTTTTACGGTTCCAGATTGCTTAAAATTTTTTCGGAAGGAGT
Found at i:2118831 original size:26 final size:26
Alignment explanation
Indices: 2118795--2118847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2118785 CCAGTTTGAA
* *
2118795 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCATATG
2118821 CTTAGACTGGGAATGAACGCCATATG
1 CTTAGACTGGGAATGAACGCCATATG
2118847 C
1 C
2118848 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCATATG
Found at i:2119617 original size:11 final size:11
Alignment explanation
Indices: 2119597--2119628 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
2119587 TGGTCAGGTT
*
2119597 CTCCGGCGATC
1 CTCCGACGATC
2119608 CTCCGACGATC
1 CTCCGACGATC
2119619 CTCCGACGAT
1 CTCCGACGAT
2119629 GGTGCCTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.44, G:0.22, T:0.19
Consensus pattern (11 bp):
CTCCGACGATC
Found at i:2119964 original size:830 final size:819
Alignment explanation
Indices: 2118938--2120556 Score: 2433
Period size: 830 Copynumber: 2.0 Consensus size: 819
2118928 CCCCATCTAT
* * * *
2118938 GTGCTGTCGATCCTGCTGTCACAACCCTCGATCTGGTCCGATCTTAGATTCGGAATGAACTCTGT
1 GTGCTGTCGATCCGGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTCGGAATGAACTCTGT
* * *
2119003 ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAG
66 ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGCAGGCAGCCACTACACCGGCCAGAGAG
*
2119068 ACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTG
131 ACGGGATGCATAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTG
*
2119133 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGT
196 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCCTCACGTGAAGT
* * * *
2119198 TTCATGGCAAGCCGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCCAGATTT
261 TTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTACGGTTCCAGATTT
* * * *
2119263 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTT
326 TTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
2119328 GGCATGCAAAAAAAAAAATTCAGCTAAACATTCGAAGTGTACAA-GATTTTGTGACCATTTGAAA
391 GGCATGC--AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATG-TTTTGTGACCATTTGAAA
* * *
2119392 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAGATCTCAAATGCTC
453 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATATCAAATGCTC
* * *
2119457 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACT
517 TTTAAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
*
2119522 AGCACCCATCGCACATCATGTGCGCACA-CCCCCTGG-CCCCCCGATCGCCGGAACCCCAATGCC
582 AGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAACGCC
*** *
2119585 GCTGGTCAGGTTCTCCGGCGATCCTCCGACGATCCTCCGACGATGGTG-CCTCGACGAAGAAAAA
647 GCCAATCAGG-T-T----C--T-CT--GACGATCCTCCGACGATGGTGCCCT-GACAAAGAAAAA
* *
2119649 TGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-GTCATAACCCTCGG-CCGGTCCGATCTT
700 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAG-CACAACCCTCGGTCCGGTCCGATCTT
*
2119712 AGACTGGGAATGAACTCCGTATGCGCAAGCCAGGGATCGACCGGGTCTTCCTCTGC
764 AGACTGGGAATGAACTCCATATGCGCAAGCCAGGGATCGACCGGGTCTTCCTCTGC
* * * *
2119768 GTGCTGTCGATCCGGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTTT
1 GTGCTGTCGATCCGGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTCGGAATGAACTCTGT
* * * * *
2119833 ATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGCGCCGGCAGCCACTACGCCGTCCAGAGAG
66 ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGCAGGCAGCCACTACACCGGCCAGAGAG
* * * *
2119898 ACGGGATGCATAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCA-CGTTTCT
131 ACGGGATGCATAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCCTCATAG-TTCT
*
2119962 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAG
195 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCCTCACGTGAAG
* ** *
2120027 TTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTACGGTTCGGGGTT
260 TTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTACGGTTCCAGATT
*
2120092 TTTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGT
325 TTTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
2120157 TGGCGTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATGTTTTGTGATCATTTGAAAAA
390 TGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATGTTTTGTGACCATTTGAAAAA
*
2120222 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTGTAAAATATCACATGCTCTTT
455 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTGTAAAATATCAAATGCTCTTT
* * *
2120287 AAGCGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCTAAGTACCAGC
520 AAGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
2120352 ACCCATCGCACATCATGTGCGCACATCCCCCCCTGGCCCCCCCGATCGCCGGAAGCGCAACGCCG
585 ACCCATCGCACATCATGTGCGCACA--CCCCCCTGGCCCCCCCGATCGCCGGAACCCCAACGCCG
* *
2120417 CCAATCAGGTTCTCTGACGATGCTCTGACGATGGTGCCCTGACAAAGAAAAATGCGGCACCAGCA
648 CCAATCAGGTTCTCTGACGATCCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGGCACCAGCA
* *
2120482 CATGCCCGAGCCCAGCATGTTCTAGCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
713 CATGCCCGAGCCCAGCATGTGCTAGCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
2120547 CTCCATATGC
778 CTCCATATGC
2120557 TTAGACTGGG
Statistics
Matches: 716, Mismatches: 64, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
820 74 0.10
821 40 0.06
822 2 0.00
823 1 0.00
825 1 0.00
827 113 0.16
828 84 0.12
829 3 0.00
830 367 0.51
831 31 0.04
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (819 bp):
GTGCTGTCGATCCGGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTCGGAATGAACTCTGT
ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGCGCAGGCAGCCACTACACCGGCCAGAGAG
ACGGGATGCATAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCCTCATAGTTCTG
TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCCTCACGTGAAGT
TTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTACGGTTCCAGATTT
TTTAAAATTTTTTCGGAAAGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATGTTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTGTAAAATATCAAATGCTCTTTA
AGCGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAACGCCGCCA
ATCAGGTTCTCTGACGATCCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTAGCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
CATATGCGCAAGCCAGGGATCGACCGGGTCTTCCTCTGC
Found at i:2123244 original size:26 final size:26
Alignment explanation
Indices: 2123215--2123264 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2123205 CCGGTCCGAT
*
2123215 CTTAGATTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
2123241 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
2123265 TGTCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:2124149 original size:26 final size:26
Alignment explanation
Indices: 2124113--2124164 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2124103 TGGTCTGATT
2124113 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
2124139 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
2124165 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:2124196 original size:897 final size:898
Alignment explanation
Indices: 2119732--2126825 Score: 9237
Period size: 898 Copynumber: 7.9 Consensus size: 898
2119722 TGAACTCCGT
* ** * * *
2119732 ATGCGCAAGCC-AGGGATCGACCGGGTCTTCCTCTGCGTGCTGTCGATCCGGCTGCCACAACCCT
1 ATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
** * *
2119796 CGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCTTTATGCCTAAGCCAACCGATGAAACGAGC
65 CGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC
* * ** *
2119860 GGGCGGGCGCGCCGGCAGCCACTACGCCGTCCAGAGAGACGGGATGCATAAGCCGTGGATCGATA
129 GGGCGGGCG-GGCGG--G-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATA
* ** *
2119925 TGGTGGTAGGTGGGTTTAGGCACATCTTCACGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
190 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* *
2119990 AAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTAT
255 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
2120055 TTTTCATGATTTTTGAAACTTTCTACGGTTCGGGGTTTTTTAAAATTTTTTCGGAAA-GAATTTT
320 TTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGATTTTT
* *
2120119 GGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCAAAAAAAAATTCAGCTAAA
384 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
*
2120184 AACTCGAAGTGTACAATG-TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
449 AACTCGAAGTGTACAA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
2120248 GGCTACT-GCAGCAAACCTGTAAAATATCACATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTT
513 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
2120312 GATGAGGGATAGGGGGCCAATATAAGGTCTAAGTACCAGCACCCATCGCACATCATGTGCGCACA
578 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * ** *
2120377 TCCCCCCCTGGCCCCCCCGATCGCCGGAAGCGCAACGCCGCCAATCAGGTTCTCTGACGATGCT-
643 --CCCCCC-GGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * *
2120441 CTGACGATGGTGCCCTGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTTCTA
705 CTG-CGATGGTGCCC-GACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT-
*
2120506 G-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
767 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * * *
2120570 GAACTTCGTACGCCTAAGTCAACCCACGACACGAGCATACGGGCGCTCAGCAGGTCAGAGGGGCG
832 GAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCG
2120635 GG
897 GG
* * * * * **
2120637 ATGCGCAAGTCGGGGGTC-AGTCGGGTCCCCCTTTGCGTGCTGCCGATCCGGCTATCGCAACCCT
1 ATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* * * * * * *
2120701 CAGTCCGGT-TCGATCTTAAACTGGGAATGAACTTCATATGCCTAAGCCAACCAACAAAACGAGC
65 CGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC
* * * * * * *
2120765 GGGCGGGCAGGCGGGTACTACGCCGGGCAGAGAGACAGGATACGCAAGCCATGGATCGATAGGGT
129 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGT
* * * * *
2120830 GTTAGGTTGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATTGCTTGTAAAT
194 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
2120895 TCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCATATTCTATTTTT
259 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
2120960 AATGATTTTTTAAACCTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG-TGTTTTGGC
324 CATGATTTTTGAAA-CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAT-TTTTGGC
* * *
2121024 CCCAAACTTGGTAGACCAT-ATCCTTGTATTTTTGTTGGAATACAAAAAAAAATTCAGCTAAAAA
387 CCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAA
* * ***
2121088 CTTGAAGTGTACGAGATTTTGT-AGCCATTTGAAAAAAGTGTAAACATTTCAGACACTTTAATGG
451 CTCGAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
2121152 CTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
515 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
2121217 TTAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
580 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
2121282 CCCC-GCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA------TG-G
645 CCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCG
* * * * *
2121339 -T-G-CCCCGGCGAAAAAAAATGCAACACCAGCACATCCCCGAGCCCAGCATGTGCTGCCGCAAC
710 ATGGTGCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
2121401 CCTCGATCCAGTCCGATCATAGATTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAAC-TCT
775 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-
* * * * *
2121465 GTATGTCTAAGTCAACCCCCGAAACGAGCGTACGGGCGCTCAACCGGCCAAAGGGGTGGG
839 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * * * * * *
2121525 ATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCACAACCCTC
1 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * * *
2121590 AGTCCGGTCTGATCTTAGATTGGGAATGAACACCGTATGCCTAAGCCAACCGATGAAACGAACGG
66 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* * * * *
2121655 GCGGGCGGGCAGGCACTACGCCGACCAAATAGACGGGATACGCAAGCCGTGGATTGATAGGGTGG
131 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGG
* * * *
2121720 TAGGTGGGTTTAGGTACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTT
196 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
**
2121785 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACAGCAAGACGACTCGTTTTCTATTTTTCA
261 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * **
2121850 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCA
326 TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCA
* * *
2121915 AGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCCA
391 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
* * *
2121980 AGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAGTGGCTACTG
456 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
2122045 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGGTTTGATTAGG
521 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGG
* * * * *
2122109 AATAGGGGACCAATATAAGGGCCAAGTACCATCACCCATCGCAAATCATGTGTGCACACCCCCCG
585 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * ** *** *
2122174 ACCCCCCCGATCGTCGAAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGCTAAGGTGATGGT
650 GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGT
* * *
2122239 GCCTTGGCGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
715 GCC-CGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
2122304 GGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAAGCTTAGACTGCGAATGAACTCCATATG
779 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
* * * *
2122369 TCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGG
844 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * ** * * * *
2122424 ATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTACTGCTGCAACCCTT
1 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* *
2122489 GGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGG
66 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* * *
2122554 GCGGGTGGGTGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGG
131 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGG
* * * *
2122619 TAGGTGGGTTTAGACACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
196 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
2122684 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
261 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
2122749 TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC-
326 TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCA
*** * * *
2122813 AACTTGGTAGAAAAGATCCTTGTATTTTTATTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGA
391 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
* *
2122878 AGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGGCTACTG
456 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
2122943 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGATTTGATGAGGG
521 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* ** *
2123008 ATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGTGCACACCCCCCGG
586 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * ** * *
2123073 CCCCTCCGATCG-CTGAAACCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGCTCCGGTGATGGT
651 CCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGT
* * * *
2123137 GCCTTGGCGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
715 GCC-CGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
2123202 GGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATG
779 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
* * * *
2123267 TCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCAAAGAGGCGGG
844 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * ** * * *
2123322 ATGCGCAAGGCGAGGATCGACCGGGTCCCCCTCTATGTGCTGTCGATCCTGCTGCTGCAACCCTT
1 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* *
2123387 GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGG
66 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* * * * * *
2123452 GCGGGTGGGTGGGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCATGCATTGATAGGGTGG
131 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGG
* * *
2123517 TAGGTGGCTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
196 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
2123582 ATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCA-GAGCAAGACGACTCGTTTTCTATTTTTC
261 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG-GCAAGACGACTCGTTTTCTATTTTTC
2123646 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
325 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
*** *
2123711 -AACTT-GTAGAAAAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
390 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG
* * *
2123774 AAGTGTACAAGATTTTGCGAGCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAATGGCTACT
455 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
2123839 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCAAGGTTTGATGATG
520 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
2123904 GATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG
585 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
2123969 GCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCATGTTCTCCGACGATGCTCCTGCGATGGT
650 GCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGT
* * * * *
2124034 GCACCGATGAAGAAAAGTGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTC
715 GC-CCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
2124099 GGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
779 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
* * * *
2124164 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGG
844 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * * * * * * *
2124219 ATGCACAAGCTGGGGAT-AAGTCGGGTACCCCTCTGCATGCTACCGATCCTGCTACCGCAACCCT
1 ATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* ** * * * * *
2124283 CGATCCGGTCCAATCTTGGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCA
65 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* ** * * *
2124348 GGTGGGCGGGCGGGCGGGT--G--GG-CAAAGAGACGTGATGCGTAAGCCGTGG-TTGGATAGGG
130 GGCGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATT-GATAGGG
* *
2124407 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAA
193 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
2124472 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
258 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * **
2124537 TCATGATTTTTGAAACTTTTTCCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCC
323 TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCC
* *
2124602 CCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGATAAAAACT
388 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
* * *
2124667 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTG
453 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
2124732 CTGGCAGTAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
518 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
2124797 GGGATAAGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
583 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
2124862 CGG--CCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT-C--CG--G----T--GATG
648 CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATG
* * * * * * *
2124914 GTGCCCCGGCGAA-AAAAATGCAACCCCATCACATCCCCGAGGCCAGCATGTGCTGTCGCAACCC
713 GTG-CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * ** *
2124978 TCGGTCCGATCTGATCTTAGAATTTGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTA
777 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTA
* * * **
2125043 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGATGGG
842 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * * * * *
2125100 ATGCGCACGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATTCTGCTGTCGCAACCCTC
1 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* ** * * * *
2125165 GATCTTGTCTGATCTTAGACTAGGAATGAACTCCGTATCCCTAAGCCAACCGACAAAAGGAGCAG
66 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--A-
* * ** * * * * *
2125230 GCAGGCGGGCGGGCAGGCACTACATCGGTCAGAAAGACGGGATACGCAAGCTGTGGATCGATAGG
128 -CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGG
* *
2125295 GTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTTCGTGCCAATGCCATTTTTATGGCTTGTAA
192 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
2125360 ATTCGTACAATGGTCCTTTAAGCCTTCACATGAAGTTCCATGGCAAGATGACTCGTTTTCTATTT
257 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * ** *
2125425 TTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTCTAAAGTTTTTTCGAAAATAGTTTTGG
322 TTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGATTTTTGG
* * * * *
2125489 TCCCAAACTTGCTAGATGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAA
386 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAA
*
2125554 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGC
451 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
**
2125619 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTTGGTGTGAGTTCTCGAGGTTTGAT
516 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
2125684 GAGAGATAAGGGGCCAATATAAGGGACAAATACCAGCACCGATCGCACATCATGTGCGCACACCC
581 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * * *
2125749 CCAGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCTGATGATACTCCTGCGA
646 CCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGA
* * * *
2125813 TGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGTCGCAAC
711 TGGTG-CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * *
2125878 CCTCGGTCCCGTCCGATCTTTGACTGGGAATGACCTCCGTATGCTTAGACTGGGAATCAACTCCG
775 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
* * * ** *
2125943 TATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGTAGGCCAGAA-GGACGGG
840 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AAGGGGCGGG
* * * * ** *
2126002 ATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTACCACCGCAACTCTC
1 ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * *
2126067 GATCCGGT-TCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAGCG
66 GGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---
* * * * * * *
2126131 GACGAGAGGGCGGGCGAGCACTATGCCTGCCAGAGAGACTGGATGCGCAAGCCGTGGATTGATAA
127 -ACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAG
* * *
2126196 GGCGGTAGGTGGGTGTT-GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATTGCTTGT
191 GGTGGTAGGTGGGT-TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
* * *
2126260 AAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGATTTGTTTTCTAT
255 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *** * * * *
2126325 TTTTCCTGATTTTTGAAACTTTTTTTAGTTTGTGATTTTTTAAAATTTTTTTGGAAGGAGTTTTT
320 TTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGA-TTTTT
* * * * * * *
2126390 -ACCCCAAACTTGGTAGCCGTGATCCTTCTATTTTTGTTGGCGTCCATAAAACAATTCAGCTAAA
384 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAA
* * * * *
2126454 AACTCGCAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATAGTTTAATA
449 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
2126519 GCTACTGGCGGCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
514 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
2126584 ATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGTACATCATGTGCGCATAC
579 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * *
2126649 CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-G
643 CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTG
** * * *
2126713 ACGATGGTGCCTCGGTGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTACCG
708 -CGATGGTGCC-CGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* ** *
2126778 CAACCCTCGGTCTGACCCGATCTTAGACTGGGAATGAACTTCGTATGC
771 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
2126826 CTAAGCCAAC
Statistics
Matches: 5485, Mismatches: 626, Indels: 157
0.88 0.10 0.03
Matches are distributed among these distances:
881 257 0.05
882 13 0.00
883 1 0.00
884 2 0.00
885 15 0.00
886 3 0.00
887 287 0.05
888 490 0.09
889 450 0.08
890 40 0.01
891 1 0.00
892 4 0.00
893 249 0.05
894 11 0.00
895 233 0.04
896 3 0.00
897 579 0.11
898 856 0.16
899 560 0.10
900 1 0.00
901 199 0.04
902 837 0.15
903 131 0.02
904 149 0.03
905 114 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCTGCGATGGTG
CCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGG
Found at i:2127938 original size:710 final size:708
Alignment explanation
Indices: 2126056--2129742 Score: 4462
Period size: 755 Copynumber: 5.1 Consensus size: 708
2126046 GATCCTACCA
* * * * *
2126056 CCGCAACTCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
2126121 GAAACGAGCGGACGAGAGGGCGGGCGAGCACTATGCCTGCCAGAGAGACTG-GATGCGCAAGCCG
66 GAAACGA---G-C---A-GGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GAAAAGCGCAAGCCG
* * *
2126185 TGGATTGATAAGGCGGTAGGTGGGTGTT-GGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
122 TGGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
* * *
2126249 TTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGAT
186 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*** *
2126314 TTGTTTTCTATTTTTC-CTGATTTTTGAAACTTTTTTTAGTT-TGTGATTTTTTAAAATTTTTTT
251 TTGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAA-TTTTTT
* ** * * * * * * *
2126377 GGAAGGAGTTTTTACCCCAAACTTGGTAGCCGTGATCCTTCTATTTTTGTTGGCGTCCATAAAAC
313 CGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
2126442 AATTCAGCTAAAAACTCGCAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
378 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * * *
2126507 GATAGTTTAATAGCTACTGGCGGCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGT
443 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
2126572 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGTACATC
508 TCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** *
2126637 ATGTGCGCATACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
573 ATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
**
2126702 ACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGC
637 ACGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGC
*
2126767 ATGTGCTA
701 ATGTGCTG
* * *
2126775 CCGCAACCCTCGGTCTGACCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAT
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * *
2126840 GAAAGGAGCAGGCGGGCAGGCGGGCGGGCACTACGTCGGCTAGAGAGATGAAAAGTGCAAGCCGT
66 G--A--A--A--CGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAAAAGCGCAAGCCGT
* * * *
2126905 GG-TCGATAGGGTGCTAGGTGGGTTTCGGCACATGTTCATATTTCTGTGTGCCAATGCCGTTTTT
123 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
2126969 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
188 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
* * *
2127034 GTTTTCAATTTTTCACGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTTCAGA
253 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTC-GA
* * * *
2127099 ATGTGTTTTGGCTCCAAACTTGGTAGACGTGCTCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
316 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
2127164 TCAGCTAAAAACT-GAAGTGTACAAGATTTTGTTACCAATTGAAAAAAGTGTCCCCATTTTAGAC
381 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
2127228 ACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
446 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
2127293 CGAGTTTTGGTGAGGAATAGGGGGCCAATACAAGGACCAAGTACCAGCACCCATCGCACATCATG
511 CGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
2127358 TGCGCACACCCCCCCCGGCCCTCCCGATCGTCGGAACCCCAATTCCGCCGGTCAGGTTCTCCGAC
576 TGCGCACA-CCCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
2127423 GATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCAT
639 GATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCAT
2127488 GTGCTG
703 GTGCTG
* * * * *
2127494 CAGCAACCCTTGGTCCGACCCGATCTTAGACCGGGAATGAACTTCGTATGCCTAAGCCAA-CGAT
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * ** *
2127558 GAAATGAGCAGGCGGGCGGGCACTACGTCAACTAGAGAGACGAAAAGCGCAAGCCGTGGATCGAT
66 GAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAAAAGCGCAAGCCGTGGATCGAT
* * * *
2127623 AGGGTGGTAGGTGGGTTTCGGTACATGTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
2127688 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
** *
2127753 TTTTTCACGATTTTCAAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
261 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTT
* * *
2127818 GGCTCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAGAAATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
*
2127883 AACT-GAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATCTT-AGACACTTTAAT
390 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAAT
* *
2127946 GGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTT
454 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
2128011 GGTGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
519 GATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
2128076 CCCCCCC-GCCCCCCGATCGCCGGAACTCCAATGCCGTCGGTCAGGTTCTCAGGCGATGCT-CTA
584 CCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
* * ** * * *
2128139 GCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGTCCGAGGCCAGCATGTGCTG
649 -CGATGGTG-CCCGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
2128201 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATAAACTCCGTATGCCTAAGTCAATCGAC
1 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * * * ** *
2128266 GAAACGAGCGGGCGGACGGGAGGGCACTACGCTGGCCAAAGAGATGGGATGCGCAAGCCGTGGAT
66 GAAACGAGC---AGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGAAAAGCGCAAGCCGTGGAT
*** *
2128331 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCTAATG--ATATTTTATG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT-TTTTATG
* * *
2128394 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCGTT
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
* * * * * *
2128459 TTTTGTTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGAAATGA
256 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG-AAGGA
* * * *
2128524 ATTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTAAG
320 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
2128589 CTAAAAACTCGTAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
2128654 TAACGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
2128719 GTTTGATGAGCG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGA
515 GTTTGATGAG-GAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
2128783 GCACA-CCCCCCGACCCCCCCGATCGCTGGAACCCCAACGCCACTGGTCAGGTTCTCTGACGATG
579 GCACACCCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
** * * ** * *
2128847 CTCCGGTGATGGTGCCCCAGTGAAGAAAAATACAGCACCACCACATGCCCGAGCCCAGCATGTGC
643 CTCCGACGATGGTGCCCGA-CGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGC
2128912 TG
707 TG
*
2128914 CCGCAACCCTTCATCTGGTCCGTTCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATG
1 CCGCAA-CC--C-TC--G---G-TC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATG
** * * *
2128979 AACAACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGTGGCGG
40 AACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCAG--G--C-G--GG---------CGG
* ** * * *
2129044 GCACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTA
85 GCACTACGCCGGCCAGAGAGACGAAAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
2129109 GGCACATCTTCATATTTCTATGTGCCAATG--ATATTTTATGGCTTGTAAATTCATACAATGGTC
150 GGCACATCTTCATATTTCTGTGTGCCAATGCCAT-TTTTATGGCTTGTAAATTCATACAATGGTC
* **
2129172 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCACGATTTTCAAA
214 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAA
* * ** * *
2129237 ACTTTTTGCGGTTCCGGATTTTTTAAAATTTTTTCGCAACAACTTTTGGCCCTAAACTTGGTAGA
279 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
2129302 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTATAAGA
343 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
2129367 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTATTGGCAGCAAACCT
408 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
2129432 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATTGGGGGCCA
473 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCA
* * * *
2129497 GTATAAGGGCCAAGTACCAGCACCCATAGGACATCATGTGCACACA-CCCCCCGGCCCCCTCGAT
538 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGAT
* * * *
2129561 CACCGGAACCCGAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTGCCCTAGCGAA
602 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGA-CGAA
* * * *
2129626 GAAAAATGTGGCATC-AGCACATGCCCTAGCCCAGTATGTACTG
666 GAAAAATGTAGCA-CAAGCACATGCCCGAGCCCAGCATGTGCTG
* * ** * *
2129669 CTGCAACCCTCGGTTC-AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
2129733 TGAAACGAGC
65 TGAAACGAGC
2129743 GTGTGGGCGC
Statistics
Matches: 2608, Mismatches: 279, Indels: 156
0.86 0.09 0.05
Matches are distributed among these distances:
706 2 0.00
707 144 0.06
708 17 0.01
709 7 0.00
710 318 0.12
711 373 0.14
712 261 0.10
713 98 0.04
714 4 0.00
716 2 0.00
717 4 0.00
718 347 0.13
719 338 0.13
720 1 0.00
721 1 0.00
722 1 0.00
723 4 0.00
724 1 0.00
725 3 0.00
727 2 0.00
728 1 0.00
729 45 0.02
730 2 0.00
731 3 0.00
735 1 0.00
737 4 0.00
738 2 0.00
739 40 0.02
740 2 0.00
742 1 0.00
743 3 0.00
744 1 0.00
745 1 0.00
746 3 0.00
749 1 0.00
751 2 0.00
752 1 0.00
754 8 0.00
755 558 0.21
756 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (708 bp):
CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
GAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAAAAGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCGACGAAGAAAAATGTAGCACAAGCACATGCCCGAGCCCAGCATGTGCTG
Found at i:2131023 original size:883 final size:877
Alignment explanation
Indices: 2129042--2131972 Score: 3744
Period size: 883 Copynumber: 3.3 Consensus size: 877
2129032 CCAGAGTGGC
* *
2129042 GGGCACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGATGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTT
**
2129107 TAGGCACATCTTCATATTTCTATGTGCCAATG--ATATTTTATGGCTTGTAAATTCATACAATGG
66 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT-TTTTATGGCTTGTAAATTCATACAATGG
* *
2129170 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTTCACGATTTTCA
130 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * ** * *
2129235 AAACTTTTTGCGGTTCCGGATTTTTTAAAATTTTTTCGCAACAACTTTTGGCCCTAAACTTGGTA
195 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
2129300 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTATAA
260 GACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAACTTCAGCTAAAAACTCGAAATGTACAA
* *
2129365 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTATTGGCAGCAAAC
324 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
2129430 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATTGGGGGC
389 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * * *
2129495 CAGTATAAGGGCCAAGTACCAGCACCCATAGGACATCATGTGCACACACCCCCCGGCCCCCTCGA
454 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTGGCCCCC-CGA
** * * * *
2129560 TCACCGGAACCCGAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGACGATGGTG-CCCTAGCG
518 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCT-C-ACGA-GCT----CGATGGTGCCCCGA-CG
* * * * *
2129624 AAGAAAAATGTGGCATCAGCACATGCCCTAGCCCAGTATGTACTGCTGC-AACC---C--TCG--
575 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAAACCTGTCGTTCGAT
* * * * *
2129681 GTT-CA-GT--CT-AA-T-C-T--TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
640 CTTAGATGTGAATGAACTCCTTGCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAA
* * * * * * * *
2129736 AACGAGCGTGTGGGCGCTCAGTCGGCCAAAGGGCGAGAAGCGCAAGTCGGGGATCGATCGGGTCC
705 AACGAGCGTGCGGGCGCTCAGCCGACCAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCC
* * * * *
2129801 CCCTCTGTGTGCTGTTGATCCTGCTGCCGCAACCGTTGGTTCGGTCTGATCTTAGAATGGAAATG
770 CCCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTTGG-TCGGTCTGATCTTAGACTGGGAATG
* **
2129866 AACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCAG
834 AACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGC-G
*
2129911 GCGAGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGATGGG
1 G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGG
* * * * *
2129976 TTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTCAAGGCTTGTAAATTCATAGAATG
64 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
2130041 GTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTGCATGTTTTTC
129 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
**
2130106 AAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
194 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
** * * * *
2130171 AGACGTGATCCTCATATTTCTGTTGGAATGCATAAAAAACTTAAGCTAAAAACTCGAAGTGTACA
259 AGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAACTTCAGCTAAAAACTCGAAATGTACA
* *
2130236 AGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
323 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
2130301 CCTGTAAAAGCTCAATTGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGG
388 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
2130366 CCAATATAAGGGCCAAGTACCATCACCCATCGCACATCCTGTGCGCACAACCCCTGGCCCCCCGA
453 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTGGCCCCCCGA
2130431 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCT-ACG-G-T-GATGGTGCCCCGACGAAGAAAAA
518 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCACGAGCTCGATGGTGCCCCGACGAAGAAAAA
* *
2130492 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAAACCTTGATCTGATTCGATCTTA
583 TGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAAACC-TG-TC-G-TTCGATCTTA
*
2130557 GATTGTGAATGAACTCCATTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAA
644 GA-TGTGAATGAACTCC--TTGCT-AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAA
* *
2130622 AACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCCCAAGCCGGGGATCGATCGGGTC
705 AACGAGCGTGCGGGCGCTCAGCCGACCA-AGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTC
* * * *
2130687 CCCCTCTGTCTGCTGCCGATCCTGCTGCCACAACCCTTGGTCAGATCTAATCTTAGACTGGGAAT
769 CCCCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTTGGTC-GGTCTGATCTTAGACTGGGAAT
*
2130752 GAACTCCGTATGACTAAGCCAACCGACAAAACGAGCGGGCGGGC-
833 GAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCG
* *
2130796 GGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTT
* *
2130861 TAGGCACATCTTCATATTCCTGCGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
2130926 CCTTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
131 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * * * *
2130991 AACTTTTTGTGGTTTGGGATTTTTTCAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAG
196 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
2131056 ATGTGATCCTTGTATTTTTGTTGGCATG-AACAAAAACATTCAGCTAAAAACTCGAATTGTACAA
261 ACGTGATCCTTGTATTTTTGTTGGCATGCAA-AAAAAC-TTCAGCTAAAAACTCGAAATGTACAA
* * *
2131120 GATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTAGCAGCAAAC
324 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
2131185 CTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
389 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
2131250 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCAC-ACCCCTCCCGGCCCCCC
454 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCT---GGCCCCCC
* * * * *
2131314 GATCGTCGAAACCCTAATACCGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
516 GATCGTCGGAACCCCAATACCGCCGGTCAGGTTCT-C-ACGA-GCT----CGATGGTGCCCCGAC
** * * *
2131379 GAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGTACGTGCTACCGTAACCCTCGGTACAGT
574 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAAACCT--GT-C-GT
* *
2131444 TCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
635 TCGATCTTAGA-TGTGAATGAACTCC-T-TGC-TAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * *
2131509 AATCCATAAAATGAGCGTGCGGGCGCTCAGCC-AGCCTAAGGGG-TGGATGCACAAGCTGGGGAT
696 AACCCATAAAACGAGCGTGCGGGCGCTCAGCCGA-CC-AAGGGGCGGGATGCACAAGCCGGGGAT
* * * * * * * * *
2131572 CGACCGGGTCCCCCTCTGGGTACTGTCGATCCTGCTACTATAACCCTCGGTTTGGTCTGATCATA
759 CGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTTGG-TCGGTCTGATCTTA
* * * *
2131637 GGCTAGGAATGAACTCTGTATGCCTAAGCCAATCGACAAAACGAGTAGGCGGGCGGGCAGG
823 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC--G-A-GCGGGCGGGC--G
* * * * *
2131698 TGGGCATTACGCTGGCCAGAGAGATGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGT
1 -GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGT
*
2131763 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
65 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
2131828 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTG
130 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * *
2131893 AAACGTTTTGCGGCTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACCTGGTA
195 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
2131958 GACGTGATCCCTGTA
260 GACGTGATCCTTGTA
2131973 AAATCTCAAT
Statistics
Matches: 1797, Mismatches: 200, Indels: 96
0.86 0.10 0.05
Matches are distributed among these distances:
860 51 0.03
861 8 0.00
865 1 0.00
866 2 0.00
868 3 0.00
869 1 0.00
870 4 0.00
871 122 0.07
872 372 0.21
873 3 0.00
875 2 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 13 0.01
883 447 0.25
884 1 0.00
885 41 0.02
886 63 0.04
887 124 0.07
888 3 0.00
890 1 0.00
891 1 0.00
895 107 0.06
896 156 0.09
897 6 0.00
898 1 0.00
899 10 0.01
903 248 0.14
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (877 bp):
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAACTTCAGCTAAAAACTCGAAATGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTGGCCCCCCGATCG
TCGGAACCCCAATACCGCCGGTCAGGTTCTCACGAGCTCGATGGTGCCCCGACGAAGAAAAATGT
GGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAAACCTGTCGTTCGATCTTAGATGTGA
ATGAACTCCTTGCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTGC
GGGCGCTCAGCCGACCAAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTG
CTGTCGATCCTGCTGCCACAACCCTTGGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACAAAACGAGCGGGCGGGCG
Found at i:2131485 original size:26 final size:26
Alignment explanation
Indices: 2131449--2131501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2131439 ACAGTTCAAT
2131449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2131475 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2131501 C
1 C
2131502 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2133781 original size:884 final size:885
Alignment explanation
Indices: 2131967--2134988 Score: 3782
Period size: 884 Copynumber: 3.4 Consensus size: 885
2131957 AGACGTGATC
* * * * *
2131967 CCTGTAAAATCTCAATTGCTCTTTAAAGGAGTGTGAGTTTTCGAGGTTTGATGAGGGATAAGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
2132032 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACACCCCTCGGCACCCCCG
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCG
* * * * * *
2132097 ATTGTCGGAACCCCAGTACCGTCGGTCAGGTTTTACG-G-T-GATGGTGCCCCGACGAAGAAAAA
130 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTACGAGCTCGATGGTGCCCCGGCGAAGAAAAA
* * *
2132159 TAC-AGCACCAGCACATGCCAGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCAATTTGATCTT
195 TACGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATCTGATCTT
* * * *
2132223 AGACTGGGAATGAACTCCATTTGCTCAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCCACG
259 AGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
2132288 AAACGAGCGTGCGGGCACTCAGA-CGACTAGAGGGGTAGGATGCTCAAGTC-AGGGATCGATCGG
324 AAACGAGCGTGCGGGCGCTCA-ACCGACCAGAGGGGTGGGATGCTCAAGTCGA-GGATCAATCGG
* * * * * *
2132351 GTCCCCCTCTGCATCCTGCCAATCCTGGTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAAG
387 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAG
* ** *
2132416 AATGAACTCCGTATGCCTAAGGCAACAGACGAAA---AAAGGGCGGGCGGGCACTACGTCGGCCA
452 AATGAACTCCGTATGCCTAAGCCAACAGACGAAAGCGAGCGGGCGGGCGGGCACTACGCCGGCCA
* * * *
2132478 GAGAGACGGGATGCGCAAACCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATGT
517 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
2132543 TTCTGCAT-CCGAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGGCCCTTAAGCCTTCATG
582 TTCTACATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
2132607 TGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
646 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCG
* * * ** * *
2132672 AGATTTTTTTAAATTTTTTCGGAATGATTTTTGGTGCCAAACTTTGTAGACGCCATCCTTGTATT
711 AGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTAGTAGACGCGATCCTTGTATT
* *
2132737 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAATATTTTGTGACTATTTG
775 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTG
2132802 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
840 AAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
2132849 CCTGTAAAGTCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
2132914 CTAATATAAGGGCCAAGTACCAGCACCCATTGCACATCCTGTGTGCACACCCCCTGGCCCCCCTG
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-G
* *
2132979 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTACG-G-T-GATGGTGCCCTGGCGAAGAAAAA
130 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTACGAGCTCGATGGTGCCCCGGCGAAGAAAAA
** ** *** *
2133041 TACGACACCAGCACATGATCGAGCCCAGCATGTGCTGTCGCAACCCGT-GGTCTGGTTTGATCTT
195 TACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC-TCGGTCCAATCTGATCTT
* *
2133105 AGACTGGGAATGAACTCCGTTTGCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
259 AGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* *
2133170 AAACAAGCGTGCGAGCGCTCAACCGACCAGAGGGGTGGGATGCTCAAGTCGAGGATCAA-CTGGG
324 AAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGGGATGCTCAAGTCGAGGATCAATC-GGG
* * * *
2133234 TCCCCCTTTACGTGCTGCTGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGA
388 TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGA
*
2133299 ATGAACTCCGTATGCCTAAGCCAACAGAC-AAAGCGAGCGGGCGGGCGGGCACTATGCCGGCCAG
453 ATGAACTCCGTATGCCTAAGCCAACAGACGAAAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAG
*
2133363 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGGCACATCTTCATATT
518 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
2133428 TCTACCTGCCAATGCCATCTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCACGTG
583 TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
2133493 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTCGGG
648 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAG
*
2133558 ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAGTAGATGCGATCCTTGTATTTT
713 ATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTAGTAGACGCGATCCTTGTATTTT
* * * *
2133623 TGTTGGCGTGCACAAAAAAATTCAG-TAAAAAACGCGAAGTGAACAATATTTTGTGACTGTTTGA
777 TGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAATATTTTGTGACTATTTGA
*
2133687 AAAAAATGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
841 AAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAA
2133733 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** *
2133798 CCAATAAAAGGGCCAAGTACCAGCTCCCATCGTTCATCATGTGAGCACACCCCCCGGCCCCCCAG
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-G
* * * * *
2133863 ATCGTCGGAACCCTAATGCCACCGGTTAGGTTCTCCGGTAATGCTCCGACGATGGTGCCCCGGTG
130 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTAC-G--A-GCT----CGATGGTGCCCCGGCG
* *
2133928 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATC
187 AAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATC
** * * *
2133993 TGATCTTAGAAAGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAAT-A
252 TGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * **
2134057 ACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATTG
317 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGGGATGCTCAAGTCGAGGATCA
* * * * * * *
2134122 GTCGGGTCCCCCTCTGCGTGCTGCGGATCTTGCTGCTGTAACCCTCAGT-TCGATCTGATCTTAG
382 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAG
* * * *
2134186 ACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGC
446 ACTGAGAATGAACTCCGTATGCCTAAGCCAACAGACG-AA--A--------GCGAGCGGGCGGGC
* * * *
2134251 GGGCACTACGCCGGCCAGAGAGACGGGAAGCACAAGTCGTGGATCGATAGGGTGGTAGGCGGGTT
500 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * ** *
2134316 TAGGCACCTCATCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGT
565 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
2134381 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGAA-TTTCA
630 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AATTTTTG
* * * * * *
2134445 AAACTTTTTACGGTTAGACATTTTTAAAAATTTTTTTTGAAGGCGTTTTGGCCCAAAACTTAGTA
694 AAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTAGTA
** * * *
2134510 GACATGATCCTTGTATTTTTGTCGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
758 GACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * * *
2134575 GATTTTGTGACCATTTGAAATAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGTAGCAAA
823 TATTTTGTGACTATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
2134639 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGG
1 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
2134704 CCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGACCCCCC
66 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCC
** * * *
2134769 GATCACCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGAG
129 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT---ACGA-GCT----CGATGGTGCCCCG-G
* * * * * * * ***
2134834 -AAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCGTGTGCTGCCGTAACCCTCGGTATGA
185 CGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAA
* * * *
2134898 TCTGATCTAAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGC
250 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
2134963 CAACCGACGAAAGGAGCGGGCGGGCG
315 CAACCCACGAAACGAGCGTGCGGGCG
2134989 GGCGGGCACT
Statistics
Matches: 1868, Mismatches: 222, Indels: 74
0.86 0.10 0.03
Matches are distributed among these distances:
881 10 0.01
882 418 0.22
883 7 0.00
884 500 0.27
885 3 0.00
889 1 0.00
890 1 0.00
893 1 0.00
894 138 0.07
895 123 0.07
896 2 0.00
898 1 0.00
905 1 0.00
906 450 0.24
907 176 0.09
908 35 0.02
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (885 bp):
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTACGAGCTCGATGGTGCCCCGGCGAAGAAAAAT
ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTCAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTGGGATGCTCAAGTCGAGGATCAATCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATG
AACTCCGTATGCCTAAGCCAACAGACGAAAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATT
TTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTAGTAGACGCGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACTATTTGAAAAAA
GTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
Found at i:2134238 original size:4 final size:4
Alignment explanation
Indices: 2134229--2134254 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2134219 GACGAAACGA
2134229 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
2134255 ACTACGCCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:2135677 original size:26 final size:26
Alignment explanation
Indices: 2135648--2135700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2135638 CCAGTCCGAT
* *
2135648 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAAACTAGGAAAGAACTCCGTATG
*
2135674 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAAAGAACTCCGTATG
2135700 C
1 C
2135701 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTAGGAAAGAACTCCGTATG
Found at i:2136571 original size:26 final size:26
Alignment explanation
Indices: 2136535--2136585 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2136525 CGGTCCGATC
2136535 TTAGACTGGGAATGAACTCAGTATGG
1 TTAGACTGGGAATGAACTCAGTATGG
*
2136561 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCAGTATG
2136586 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCAGTATGG
Found at i:2137458 original size:26 final size:26
Alignment explanation
Indices: 2137429--2137481 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2137419 CTGGTCCGAT
*
2137429 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
2137455 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
2137481 C
1 C
2137482 CTATGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:2137882 original size:21 final size:21
Alignment explanation
Indices: 2137857--2137903 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
2137847 TCGTTTTCTA
*
2137857 TTTTTCACGATTTTTGAAACT
1 TTTTTCACGATTTTTGAAAAT
** *
2137878 TTTTTCGGGATTTTTTAAAAT
1 TTTTTCACGATTTTTGAAAAT
2137899 TTTTT
1 TTTTT
2137904 TGGAAGGTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.09, G:0.11, T:0.60
Consensus pattern (21 bp):
TTTTTCACGATTTTTGAAAAT
Found at i:2139257 original size:26 final size:26
Alignment explanation
Indices: 2139221--2139273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2139211 CCGATCCGAT
*
2139221 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2139247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2139273 C
1 C
2139274 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2140735 original size:904 final size:902
Alignment explanation
Indices: 2134930--2143283 Score: 11033
Period size: 903 Copynumber: 9.3 Consensus size: 902
2134920 ACTCCGTATG
* *
2134930 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAGC--G-GGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGC
* * *
2134992 GGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* ** * *
2135057 TAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCGTACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * **
2135122 CCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
2135187 AACGTTTTGCGGTTCA-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACATAGTA
261 AACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
2135251 GACGTGATCCTTGTATTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
325 GACGTGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * ** * *
2135316 AAGATTTTGTGGCCATTTGAAATAAGTGTCCCTATTTCAGACTTTTTAATGGCTACTAGCAGGAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
2135381 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
2135446 GCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCC
* * *
2135511 CCGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
582 CCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * *
2135576 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCA
647 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * *
2135641 GTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
2135706 CCAACCCACGAAACGAGCGTGCGGGCGCACAACTGGCCAAAGGGGCGGGATACACAAGCCGAGGA
777 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
2135771 TC-AGTCGGGTCCACCTTTGCGTGCTGCCGATCCTGCTGCCACGACCCTTGGTCCGGTCCGAT
842 TCGA-CCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGT-CGAT
* * *
2135833 CTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC--G-GGAGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGC
* * * *
2135895 GGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGTGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* **
2135960 TAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
2136025 CCCTTAAGCCTTTACGTGAAGTTTGATGGCAAGACGAGTCGTTTTATATTTTTCATGA-TTTTCA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
** * * * *
2136089 AAAATTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
2136154 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAACTAAAAGCTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
2136219 ATGTTGTGACCA-TTGAAAAAAGTGTCCCCATTTCGGACACTCTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
2136283 TGTAAAATATCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
2136348 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * * * **
2136412 TCGCTGGAACCCTAATGCCGCCGGTCATG-T-T----C--T--T-CGATGATGGTGCCCCAACGA
586 TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGA
* * * * * *
2136466 ACAAAAAT-CTGGCACCAGCACATGCCAGAGCCCAGTATCTGCTGCCGTAACCCTTGGTTCGGTC
651 AGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
* *
2136530 CGATCTTAGACTGGGAATGAACTCAGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
715 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
2136595 ACCCACGAAACGAGCGTGTGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGAAAGTCGGGGATCG
780 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** ** ** * * * *
2136660 ACCGGGTCCCCCTCTATGCACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCAAT
845 ACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGT-CGAT
**
2136719 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GCGGGCAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGC
* * *
2136777 GGGCACTACGCCGACCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*** * * * *
2136842 TAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTCTCAACTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
2136907 CCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * **** * * *
2136972 AACTTTTTACGGTTTGAG-TTTTTTGAAAAAAAAATTT-GAAGGAATTTTGGCCCAAAACTTAGT
261 AACTTTTTGCGGTTAGGGATTTTTT--AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
2137035 ATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTCAAAACTCAAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
2137100 AGATTTTGTGACCATTTGAAATAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
2137165 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
2137230 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCTGACCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
** ** * *
2137293 GATCGTTGGAACCCCAATGCCATCAGTCAGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCAGC
584 GATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * *
2137358 GAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGAATTGTGCTGCCGTAACCCTCGGTCTGG
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA-TGTGCTGCCGTAACCCTCGGTCCGG
* * * *
2137423 TCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCTGTATGCCTATGT
713 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
2137488 CAATCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGA-GGGCGGGATGCGTATGCCGAGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** * *
2137552 CAACCGGGTCCCCCTCTACGTACTGTCGATCTTGCTACCACAACCCTCGGTCTGATCAGAT
843 CGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTC-GAT
* ** * * *
2137613 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAAATGACGAAATGAGTGGGCGGACGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGG
* * * *
2137678 CGCGCACTACGCCGGACAGAGAGACGGGATGCGCAAGCCATGGAGCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
2137743 TTAGGCACATCTTCATATTTCTACATGCCGATGCCATTGTTATGGCTTGTAAAGTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
2137808 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
2137873 AAAC-TTTT----TTCGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCGAACTTGGTA
260 AAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
2137933 GACATGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCCACAAACGCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** * *
2137998 GATTTTACGACCATTTGAAAAAAGTGT-CCTATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
2138062 CTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
2138127 CAATATAAGGGCCAAGTACCAGCACTCATCACATATCATGTGCGCACACCACCCCCGGCCCCCTC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCC
* * *
2138192 GATCGCCGAAACCCCAATGCCGCCAGTTAGGTTCT----C--TG----G-TGATGGTGCCCCGGC
584 GATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * *
2138246 GAAGAAAAATGCGGCACCCGCACATACCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* * * * * *
2138311 CCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTAGGAATAAACTCCGTATGCATAATTC
714 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * **** *
2138376 AAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAATTAGGGATA
779 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * ** * * * **
2138441 TATCGGGTCCCCCTCTACGTACTGTCGATCCTGCTACCACAACCCTCAGTCTAATCAGAT
844 GACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTC-GAT
* *
2138501 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAAACGACG-AACTGAGCGGGCGGACGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GAGCGGGCGG-CGGGCGG
* * * *
2138565 GCGCGCACTATGCCGGACAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGG
64 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
2138630 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** * *
2138695 GTCCCTTAAGCCTTCACGTGAAAATTGAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * ** **
2138760 GAAACCTTTTGCAGTTTGGGATTTCCTAATTTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
259 GAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * **
2138825 AGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTTA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
2138890 AGATTTTGTGACCATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
2138955 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** *
2139020 CCAATATAAGGGCCAAGTACCAGCACCCATCCCACATTTTGTGTGCACACCCACCCCGGCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCC
* * * * *
2139085 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGCGCCCCGA
583 CGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * * *
2139150 CGAAGAAAAATACGGCACCAGCACATGCCAGAGCCCAGCATGTGTTGCCGTAACCCTCGGTCCGA
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
*
2139215 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
713 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
2139280 CAACCC-CTGAAACGAACGTGCAGACGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
778 CAACCCAC-G--A--AAC--G-AG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * ** *
2139344 GCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCTTGCTGCCGCAACCCTCAATCGGGT
834 GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGT
*
2139409 CCACT
899 CGA-T
* * *
2139414 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGG
** * * * *
2139479 CATGCACTACGCGGGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGATGGTATGTGGG
65 CGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
2139544 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
2139609 GTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * *
2139674 GAAACTTTTTATGGTTCA-GGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGG
259 GAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* *
2139738 TAGACGTGATCCTTGTATTTTTGTTGGCATGTATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
2139803 AAGATATTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
2139868 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGACAAGGA
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
2139933 GCGAATGTAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGTGCACA-CCCCCCGGCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * *
2139997 CGATCGTCGGAACCCCAATACCGTCAGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGG
583 CGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * * * *
2140062 TGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGGTGCCGCAACCCTCGGTCCGA
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
*
2140127 TCCGATCTTCA-ACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
713 TCCGATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
2140191 TCAACCAATGAAATAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTC-GGATGCGCAAGCCGGGG
777 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGCCGGGG
* * * * * *
2140255 ATCGGCCGGGTCCCCCTTTGCGTGCTACCAATCATGCTACCACAACCCTCGGTCTGATCTGAT
841 ATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTC-GAT
* * *
2140318 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGCCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGG
* * * * * *
2140383 CGGGCACTATGCCGGTCAGAGAGACGGGATGCGTAAGCCATGAATCGATAGCGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
2140448 TTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTCTATGACTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
2140513 TCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * **
2140578 AAACTTTTTACGGTTAGGGATTTTCTAAAATTTTTTTGAAAGGATTTTTGGCCACAAACTTTTTT
260 AAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC-TTGGT
* *
2140643 AGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
2140708 AGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
2140773 CCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
2140838 CCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGG-CCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * * * * * * *
2140902 AATCACCGGAACCCCAATGCAGCCGGTCAGGTTCTCTGGCGATGCTTCGACGATGGTGCCCTGAC
584 GATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * ** *
2140967 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCACGTGCTGCCACAACCCTCGGTACGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* * * * *
2141032 CTGATCTTAGATTGGGAATGAACTCCGTATGCTTAAACTGGGAATCAACTCTGTAT-CCTAAGTC
714 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
2141096 AACCCATGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
779 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *
2141161 GGCCGGGCCCCCCTCTGCGTGCCACCGATCTTGCTGCCACAACCCTTGGTCTGGTTCGAT
844 GACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGG-TCGAT
* * *
2141221 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGTGGATGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGG
* * * *
2141286 CGGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
2141351 TTAGGCACATCTTCATATTCCTACATTCCAATGCCATTTTTATGGCTTGTAACTTCATACAGTGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
2141416 TGCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
2141481 AAACTTTTTACGGTTCA-GGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
260 AAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
2141545 AGACATAATCCTTGTATTTTTGTTGACATGCATAAAACAATTCAGCTAAAAACTCGAAGCGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
2141610 AGATTTTGTGACCTTTTGAAAAAAAAAAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAC
389 AGATTTTGTGACCATTTG----------AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
2141675 TGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
444 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
2141740 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCC
509 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* ** * * * * * *
2141805 CGGCCCCCCCGATCACCAAAACCCCAATGCTGCCAGTCAGGTTCTTCGGTGACGCTCCGTCGACG
574 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATG
* * * * * *
2141870 GTTCCTCGGCAAAGAAAAATGCGGCAACAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
639 GTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
*
2141935 TCAGT-C--T--GA---T---C------TG-A-T-C-T-T-C---GACTGGGAATGAACTCCGTA
704 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
*
2141974 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
769 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* ** * * *
2142039 -CCGGGGATTGGTCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCTGGT
834 GCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGT
2142103 GCGAT
899 -CGAT
*
2142108 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGG
*
2142173 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
2142238 TTAGGCACATCTTCATCTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
2142303 TCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
2142368 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGTCCCAAACTTGGTA
260 AAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
2142433 GACATGATCCATGTATTTTTTTTGGCATGTACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
2142498 GATTTTGGGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
2142563 CTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
2142628 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCGG-CCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* * * * **
2142691 ATCGTCGGAACCCCAATGCCGTC-GATCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGTA
585 ATCGCCGGAACCCCAATGCCGCCAG-TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * *
2142755 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCTTGTGCTGTCGTAACCCTCGGTCTGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
* *
2142820 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
714 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** ** **
2142885 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCATAAGCTAGGGATC
779 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * ** *
2142950 AACTGGGTCCCCCTCTGCGTGCTATTGATCTTGCTGCCGCAACCCTCGGTCTGGTGCGAT
844 GACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGT-CGAT
* * * *
2143010 CTTATACTGGGAATGAACT-TGTATGCCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCGGGCGGG
* * * *
2143074 CGGTCACTACGCCGGCCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGC
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * **
2143139 TTACGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
2143204 TCCCTTAAGGCTTCACATGAAGTTTCATGGCAAGACGAATCGTTTTCAATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
2143269 AAACTTCTTGCGGTT
260 AAACTTTTTGCGGTT
2143284 CAGGTAGACG
Statistics
Matches: 6559, Mismatches: 768, Indels: 250
0.87 0.10 0.03
Matches are distributed among these distances:
874 1 0.00
875 105 0.02
876 8 0.00
877 156 0.02
878 1 0.00
880 2 0.00
882 182 0.03
883 150 0.02
884 161 0.02
885 2 0.00
886 277 0.04
887 562 0.09
888 420 0.06
889 7 0.00
890 1 0.00
891 3 0.00
892 3 0.00
893 134 0.02
894 347 0.05
895 119 0.02
896 154 0.02
897 150 0.02
898 7 0.00
899 192 0.03
900 60 0.01
901 317 0.05
902 415 0.06
903 842 0.13
904 553 0.08
905 147 0.02
907 1 0.00
908 4 0.00
909 3 0.00
910 2 0.00
911 1 0.00
912 364 0.06
913 259 0.04
914 447 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTCGAT
Found at i:2142861 original size:26 final size:26
Alignment explanation
Indices: 2142825--2142877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2142815 CTGGTCCGAT
2142825 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
2142851 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2142877 C
1 C
2142878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2148386 original size:26 final size:26
Alignment explanation
Indices: 2148357--2148409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2148347 CCAATCCGAT
*
2148357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2148383 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2148409 C
1 C
2148410 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:2148899 original size:26 final size:26
Alignment explanation
Indices: 2148870--2148922 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2148860 CCGGTCTGAT
2148870 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
2148896 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
2148922 C
1 C
2148923 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:2150527 original size:26 final size:26
Alignment explanation
Indices: 2150476--2150528 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2150466 CCGGTCCGAT
**
2150476 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCATATG
*
2150502 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
2150528 C
1 C
2150529 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:2152143 original size:26 final size:26
Alignment explanation
Indices: 2152114--2152166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2152104 CTGATCCGAT
* *
2152114 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACAGGGAAAGAACTCCGTATG
*
2152140 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAAAGAACTCCGTATG
2152166 C
1 C
2152167 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAAAGAACTCCGTATG
Found at i:2153913 original size:26 final size:26
Alignment explanation
Indices: 2153874--2153924 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2153864 CTTGTCCAAT
*
2153874 CTTAGACTGTGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
2153900 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2153925 GCCTATGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:2154810 original size:26 final size:26
Alignment explanation
Indices: 2154774--2154826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2154764 CCAATCCAAT
*
2154774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
2154800 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
2154826 C
1 C
2154827 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:2155702 original size:26 final size:26
Alignment explanation
Indices: 2155673--2155723 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2155663 CCGGTCTAAT
* *
2155673 CTTAGACTTGGAATGAACTCTATATC
1 CTTAGACTAGGAATGAACTCCATATC
2155699 CTTAGACTAGGAATGAACTCCATAT
1 CTTAGACTAGGAATGAACTCCATAT
2155724 GCCTAAGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATC
Found at i:2156329 original size:902 final size:897
Alignment explanation
Indices: 2150502--2157831 Score: 9606
Period size: 898 Copynumber: 8.2 Consensus size: 897
2150492 ACTCTGTATG
* *
2150502 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----GCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* * * * * *
2150563 CACTACGCCGACAAGAGGGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGATGGGTATAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
2150628 GCACATCTACATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
2150693 TTAAGCCTTCACGTGAAGTATT-ATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAA
196 TTAAGCCTTCACGTGAAGT-TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
2150757 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
2150822 GTGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGCGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
2150887 TTTGTGACCATTTGAAAAAAGTGTCTCCA-TTCTAGACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
2150951 GTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTTTC-AGGGTTTGATGAGGGATAAGGAGCC
454 GTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCC
* * * * *
2151015 AATCTAAGGGCCAAGTACCATCACCCATTGCACAACATGTGCGTACACCCCCCCGGCCCCCCCGA
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * * * *
2151080 TCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCTGGCGATTGTGCCCTGGCGA
582 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCC-GACGA
* ** * **
2151145 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCACATGCTGCCGCAACCCTCGGTCCAATCC
645 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
* * * *
2151210 AATCTTATATTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATCCCTAAGTCAA
710 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
2151275 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGCCGAGGATCG
775 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCG
* * * * ** * * *
2151339 GTCGGGTCCCCCTTTGCGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCCGGTCTGAT
839 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCTAAT
* * * * **
2151398 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAGTGGGCGGGCGGATGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* * * *
2151463 CACTACACCGGCCAGAGAGACGGGATGCGTAAGCCTTGGATCGATATGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
2151528 GCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCTC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * **
2151593 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTGTTCATAACTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
2151658 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
2151723 TGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGCGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
2151788 TTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGACAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
2151853 AAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGTCAAT
456 AAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
2151918 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCACCCCCCGACCCCCCCAAT
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCCGGCCCCCCCGAT
* * *
2151983 CGCCGGAACCCCAATG-C-CCGAGTCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCGACGA
583 CGTCGGAACCCCAATGCCGCCG-GTCAGGTTCTCCG-CGATGCTCCGACGATGGTG-CCCGACGA
* ** * * * *
2152046 AGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTATTGTAACCCTCAGTCTGATCC
645 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
* * * *
2152111 GATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAA
710 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** * *
2152176 CCCACGAAACGAGTGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGAACAAGCCAGGGATCGA
775 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGG
* * * * ** *
2152241 TCGGATCCCCTTCTACGTGCTGCCGATCCTACTGCTGCAACCCTCAGTCCGATCTGAT
840 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCTAAT
* * * **
2152299 CTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGATGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGTGGGCGGGCGGG
* * * * *
2152364 CGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGCAGGTGCGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * *
2152429 TTAGGCACATCTTCATATTTCTGCACACCAATGCCATTTTTATGGCCTGTAAATTTATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
2152494 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTGGTTTTCTATTTTTCACGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
2152559 AAACATTTTGCGGTTCGGGATTTTTGAAAATTTTTTCAGGAA-TAGTTTTGGCCCCAAACATGGT
257 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGT
*
2152623 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
2152688 AGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAA
386 AGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
2152753 ACATATAAAATCTCAGATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
2152818 GCCAATATAAGGACCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCAG-CCCCC
514 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * *
2152881 CGATC-ACTGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCG
579 CGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCC-CG
* * *
2152945 GCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGCAA-CC-C--T-CG
641 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
2153005 G-----TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
706 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
2153049 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGA
771 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGA
* * * * * * * *
2153114 TCGGCCGGGTCCCACTCTCCGTGCTACCAATCCTGCTGCCACAACCATCGGTCC-AGTCTGAT
836 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGA-TCTAAT
* * * *
2153176 CTTATACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACGAAAC---T-AGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
*
2153237 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
2153302 GCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
2153367 TTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
2153432 TTTTTGCGGTTCGAGATCTCTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
2153497 TGATCCTT-TTTTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
2153561 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
2153626 AAAATCTCAAATGCTCTTTAAGGGGTTGCGAGTTCTCAAGGTTTGATGAGGGGTAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
2153691 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCG
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* *
2153755 TCGGAACCCCAATGTCGCCAGTCAGG---T------T-CTCCGACGATGGTGCCCCGACGAAGAA
585 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTG-CCCGACGAAGAA
* * **
2153810 AAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTTGTCCAATC
649 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAATC
* * *
2153875 TTAGACTGTGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCA
714 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
2153940 TGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCCGTCGG
779 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGG
* * ** * * **
2154005 GTCCCCCTCTGCGTGCTGCCAATCCTGTTGCCACAACCCTTGGTCTGGT-TCGGT
844 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCT-AAT
2154059 CTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCGACGAAACGATCAGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG---A-GT----GGGCGGG
* * * * *
2154123 CGGGCGGGTGGTCACTACGTCGGCCAGAAAGACGGGATACGCAAGTCGTGGATCAATAGGGTGGT
58 CGGGC--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
**
2154188 AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
119 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
2154253 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
184 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * ** *
2154318 GATTTTTTAAACCTTTTGCGGTTCCAGATTTTTTAAAATTTTTT--GAAGGGAGTTTTGACCCCA
249 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCA
* * * *
2154381 AACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCACGCACGAAAAAATTCTGCTAAAAACTCGA
313 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
2154446 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTG
378 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
2154511 GCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCGCGAGGTTTGATGAGGG
443 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
2154576 ATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACATTATGTGCGCACAGGCCCCCC
507 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC
* * *
2154641 GGCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTCAAGTTCT-C-C-A------G-CGATGGT
571 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGT
* * * * *
2154696 GCCCTGACGAAGAAAAATGCGACACCAGCACATGCCCGAGGCCAGCATTTGCTGCCACAACCCTC
636 GCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* ** *
2154761 GATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATG
700 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
2154826 CCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGCCCAGAGAGGCAAGATGCGCAAGC
765 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGC
* * * * * * *
2154891 CAGGGATCGGCCAGATCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAATCCGGTCT
830 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCT
2154956 AAT
895 AAT
* * * * * * *
2154959 CTTAGACTAGGAATGAACTCTGTATGCCTAAACCAATCGATGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* * * * *
2155024 CATTATGCCGGCCAGAGAGACGGGATGCGCAATCCGTGGATCGATAGTGTGATAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
2155089 GCACATTTTCATATTTCTGCATGCCAATGTCATTTTTATGGTTTGTAAATTCATACAATGGCCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
2155154 TTAAGCCTTCATGTGAAGTTTTAATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 TTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
2155219 CTTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCAAAACTTGGTAGAC
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
2155284 CTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
2155349 TTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTCGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
2155414 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
2155479 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC-CTACACCCCCCCGG-CCCTCCGAT
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-ACACCCCCCCGGCCCCCCCGAT
** *
2155542 CACCGGAACCCCAATGTCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCGACGAAG
583 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCCCGACGAAG
* * *
2155607 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGGTCTAA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAA
* ** * * *
2155672 TCTTAGACTTGGAATGAACTCTATATCCTTAGACTAGGAATGAACTCCATATGCCTAAGGT-AAC
712 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA-GTCAAC
* * * * *
2155736 CCACGAAACGAACGTGCGGGCGTTTAGCCAGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGT
776 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGT
* * * * * * *
2155801 CGGG-CCCTTCTCTGCATGCTGCTGATCTTGCTGCCACAACCCTCAATCTGATCCAAT
841 CGGGTCCC-CCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCTAAT
** * *
2155858 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATTAAATGAGTTGGCGGGCGGACAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGG---G-
* * * *
2155923 CGGGCACTACACCGACCAGAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
2155988 TCAGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
2156053 TCCCTTAAGCCTTCACGTGAAGTTTCATTGCCAGATGACTCGTTTTCTATTTTTCATGATTCTTA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * ** **
2156118 AAACTTTTTTCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTTCCCAAAAATGGTA
257 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
2156183 GACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
2156248 GATTTTGTGACCATTTGAAAAAATTATCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
2156313 CTGAAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * **
2156378 CAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACA-CACCCCGGTGACCCCC
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCC
* * * * **
2156442 -ATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCTGACGATGCTCCTACGATGGTGCCCCGGT
580 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTG-CCCGAC
* * * * *
2156506 GAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCCGGT
643 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
*** * *
2156571 TTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTC
708 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
2156636 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCACAAGCCGAGGATC
773 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATC
* ** ** *
2156701 GGTCGGGTCCCCC-GTGCGCACTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTAAT
838 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCTAAT
* * * *
2156760 CTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAACGAGTGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* *
2156825 CACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
2156890 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
2156955 TTAAGCCTTCACGTGAAGTTTCATGGTAGGGCGACTCATTTTTTATTTTTCATGATTTTCGAAA-
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
2157019 TGTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGCAAGGAATTTTGGTCCCAAACTTGGTAGGC
261 T-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
2157084 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
2157149 TTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
2157214 TAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
2157279 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATC
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
** ** * * *
2157343 GTCGGAACCCTTATGCCTTCGGTCAGGTTCTCCGACGTTGCTCCGGCGATGGTACCCCGACGAAG
584 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGT-GCCCGACGAAG
* * * * * * *
2157408 AAAAATACGGCACCAGCACATGCTCGACCCCAGCATGTGCTGA-TGAAACCCTCGGTCAGGTCCG
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ACCGCAACCCTCGGTCCGGTCCA
* *
2157472 ATCTTAGACTGGGAATTAACTTCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAAC
711 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
2157536 CCACAAAACGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGACGGGATGCGCAAGCCGGGGATCGGC
776 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGT
* * * * * *
2157601 CGGGTCCCCCTCTGTGTGTTGCCGATCTTGCTGCTACAACCCTCGGTCC-AGTCCAAT
841 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGA-TCTAAT
* * * * ** * *
2157658 CTTAGACTGGGAATGAACTCCGTATGCTTGAGCCAACTGACGAAACGAGCGTACAGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
* *
2157723 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGATGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
2157788 GCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTT
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
2157832 TTAGGGGGTG
Statistics
Matches: 5635, Mismatches: 672, Indels: 252
0.86 0.10 0.04
Matches are distributed among these distances:
857 65 0.01
858 5 0.00
859 1 0.00
861 1 0.00
862 1 0.00
865 1 0.00
866 2 0.00
867 157 0.03
868 98 0.02
869 252 0.04
872 1 0.00
875 1 0.00
876 1 0.00
877 178 0.03
878 3 0.00
879 3 0.00
881 4 0.00
882 27 0.00
883 158 0.03
885 1 0.00
888 1 0.00
889 166 0.03
890 82 0.01
891 245 0.04
892 5 0.00
893 15 0.00
894 9 0.00
896 49 0.01
897 134 0.02
898 1223 0.22
899 281 0.05
900 751 0.13
901 331 0.06
902 510 0.09
903 406 0.07
904 6 0.00
905 309 0.05
906 150 0.03
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGT
CCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCTAAT
Found at i:2156605 original size:26 final size:26
Alignment explanation
Indices: 2156576--2156628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2156566 CCGGTTTGAT
2156576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2156602 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2156628 C
1 C
2156629 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2157517 original size:25 final size:26
Alignment explanation
Indices: 2157474--2157525 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2157464 CAGGTCCGAT
* *
2157474 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2157500 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2157525 C
1 C
2157526 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2158983 original size:26 final size:26
Alignment explanation
Indices: 2158932--2158984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2158922 CTGGTCTTAT
*
2158932 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2158958 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCATATG
2158984 C
1 C
2158985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2159859 original size:26 final size:26
Alignment explanation
Indices: 2159830--2159880 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2159820 CCGTTCGATC
* *
2159830 TAGACTGGGAATGGACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
2159856 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2159881 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2160762 original size:26 final size:26
Alignment explanation
Indices: 2160733--2160784 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2160723 CTGGTCCGAT
* *
2160733 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGCAATGAACTCCGTATG
*
2160759 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAAACTGGCAATGAACTCCGTATG
2160785 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGCAATGAACTCCGTATG
Found at i:2162573 original size:25 final size:26
Alignment explanation
Indices: 2162539--2162590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2162529 CTGGTCCGAT
2162539 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
2162564 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2162590 C
1 C
2162591 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2163303 original size:11 final size:11
Alignment explanation
Indices: 2163287--2163317 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
2163277 AACCCCAATG
2163287 CCGACGATGCT
1 CCGACGATGCT
2163298 CCGACGATGCT
1 CCGACGATGCT
2163309 CCGACGATG
1 CCGACGATG
2163318 GTGCCCCGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.16
Consensus pattern (11 bp):
CCGACGATGCT
Found at i:2163427 original size:26 final size:26
Alignment explanation
Indices: 2163398--2163450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2163388 CCGGTCTGAT
2163398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2163424 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2163450 C
1 C
2163451 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2164721 original size:902 final size:901
Alignment explanation
Indices: 2158674--2166861 Score: 10714
Period size: 898 Copynumber: 9.2 Consensus size: 901
2158664 CCCCATTTGC
* *
2158674 AAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
2158739 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
* * * * * * * * *
2158803 CAAAACCCTAATGTCGCCGGTCAGGTTCTCCAACGATGCTCTGGCGATGGTGCACCGACGAAGAA
131 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
* * *
2158868 AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCCACCCTCGGTCTGGTCTTATC
196 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCTGATC
* ** * *
2158933 TTAGACTAGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCCCTATGCCTAAGTCAACCCA
260 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
2158998 TGAAACAAGCGT-AGGGCGCTCAGCCGGCCATAGGGGCAGGTTGCACAAGTCGGGGATCGACCGG
325 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGG
* * * * * * *
2159062 GT-CCCCTCTGCGTGCTACCCATCCTACTACCGCAACCCTCAGT-TCGATGCGATCTTAGACTAG
390 GTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGT-CGATCTTAGACTGG
* * * **
2159125 GAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCGGGCAGGTAGGCACTAC
453 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC
* * *
2159190 GTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACAT
518 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
2159255 CTTCATATTTCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGG
583 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * **
2159320 CTTCACGTGAAGTTTCATGACAAGACAACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTT-
648 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
2159384 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGAAGACATGATC
713 G-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
2159449 CTTGT-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
2159513 ACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
2159573 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2159638 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCA--CCCCCGGCCCCCCGATCGT
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
* * * * *
2159701 CGAAACCACAATGCCGTCGGTCAAGTTCTCCGATGATTCTCCGACGAT-GTGCCCCGACGAAGAA
131 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
* * * * * * *
2159765 AAATGCGGCACTAGCACATGTCCAAGCCCAGCATGTGCCGCTGCAACCCTCAGTGCCGT-TCGAT
196 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCT-GAT
* *
2159829 C-TAGACTGGGAATGGACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
259 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
2159893 ACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCGAGTCAGGGATCGGCCG
324 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* ** * *
2159958 GGTCCCACTCTCCGTGCTACCGATCCTGCTGCCGCAACCATCGGTCTGGTCCAATCTTAGACTGG
389 GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACTGG
* * * * * * *
2160023 GAATGAACTCTGTATCCCTAAGCCAACAGACGAAACTAACGGGCGGACGGGTGGGCGGGCACTAC
453 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC
* * * * *
2160088 GTCGGCCAGAGAGACGGGATACGCAAGCTGTGGATCGATAGGGTGGTTGCTGGGTTTAGGCACAT
518 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
2160153 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
583 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
2160218 CTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-
648 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
2160282 GTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGCAAACGTGATC
713 G-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
2160347 CTTGTATTTTTGTTGGCATGCATAAAAAAATTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
2160412 ACCATTTGAAAAAAGTTTCCCCTTTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
2160472 AAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2160537 ATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACAGCCCCCCCGGCCCCTCCGATC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCC-CCGATC
* * * *
2160602 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-AGCGATGCT-CTAGTGATGGTGCCCCGACGA
129 GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGA-CGATGGTGCCCCGGCGA
* * * ** *
2160665 AGAAAAATGCGGCACCAACACATGCCCGGGGCCAGCATGTGCTGTTGCAACCCTCGGTCTGGTCC
192 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCT
* * * *
2160730 GATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGCAATGAACTCCGTATGACTAAGTCAA
256 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
2160795 CCCACGAAATGAGGGTACGGGCGCTCAGTCGGCCAGAGGGGCGGG-TCACGCAAG-CGGAGGATT
321 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-GCGCAAGTCGG-GGATC
* * * * * ** * * * * * *
2160858 AGTCGGGTCCCTCTATGTGTGTTGTC-ATTCCTGCTACCTCAACCCTCAGTCTAGTCCAATTTTA
384 GGCCGGGTCCCCCTCTGTGTGCTACCGA-TCCTGCTGCCGCAACCCTCGGTCTGGT-CGATCTTA
* * * * * *
2160922 GACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACAAAACGAGCGAGTGTGCGGGCGGGCGGG
447 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGG
* * * *
2160987 CACTACACCGACCAGAGAGATGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
512 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
2161052 GCACATCTTCATATTTCTACGTGCC-ATGCCATTTTCATGGCTTGTAAATTCATACAATCGTCCC
577 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
2161116 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
642 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
2161181 TTTTT-GCAGTTTGAGATTTTTTAAAATTTTTTCGGAATGAGCTTTGGCCCCAAACTTGGTAAAT
707 TTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
2161245 GTGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACTCAAAGTGTGCAAGAT
771 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
2161310 TTTGTGACCATTTGAATAAAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
836 TTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
2161374 GT
900 GT
* *
2161376 AAAATCTCAAACGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2161441 ATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCTCGGCCCCCACGATCG
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCG
* * ** * * * * * *
2161506 CCGGAACCCCAATGTCACCAGCCAGGTTCTCAGGCGGTGCTCCGACGATGGTGCCCCGGTGAAGA
130 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * * * * *
2161571 AAAATGCGGCACCAGCACATGCCCGAGCCCATCATGTGTTGTCGTAACCCTTGGTCTGGTCCGAT
195 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCTGAT
** ** * * * *
2161636 CTTATCCTGGGAATGAACTTTGTATGCTTAGACTAGGAATCAACTCTGTTTGCCTAAGTCAACCC
259 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * **
2161701 ACGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTAG
324 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* ** * * * * *
2161766 GGTCCCCCTTTGCATGTTGCCAATCTTGCTGCCGCAACCCAT-GGTCCGGTCTGATCTTAGACTG
389 GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCC-TCGGTCTGGTC-GATCTTAGACTG
* * *
2161830 GGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCAGGCGGGCGGGCACTA
452 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTA
* * * *
2161895 TGCCTGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
517 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
2161960 TCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAAAAATGGTCCCTTAAG
582 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
2162025 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
647 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * ** * *
2162090 ACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGTGTTTTGGCTGCGAACTTGGTAGACGTAATC
712 AGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
2162155 TTTGTATTTTTATTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
2162220 ACCATTTGAAAAAAGTGTCCCCATTT-AGGACACTTTAATAGCTACTGGCAACAAACTTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCA-GACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
2162280 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * **
2162345 ATAAGGGCCAAGTACTAGCACCCATCCCACATCATGTGCGCACACCCCCCTGGCCCCCCGATCAT
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
** * * *
2162410 CGAAACCTTAATGCCGTTGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGCGAAGAA
131 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
* * *
2162475 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCTGGTCCGATC
196 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GGTCTGATC
* * *
2162540 TTAGACT-GGAATGAACTCCATATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCAA
260 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * **
2162604 CGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGACGGGAAGCGCAAGCCCAGGATCGGCCGG
325 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGG
** * *
2162669 GTCAACC-C----T--TA--G-T-CTGAT--C-CAA---TC--T-TAG--G--C----A--GGGA
390 GTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCGATCTTAGACTGGGA
* * * * *
2162704 ATGAACTCCGTATGCCTATGCCAACTGACGAAATGA--------GCTGGCGGGCGGGCACTATGC
455 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGC
* *
2162761 CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCT
520 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2162826 TCTTATTTTCT-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCC
585 TCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** * *
2162890 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTAC
649 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG
* ** * * * *
2162955 AGTTTTGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTACACGTGATCCT
714 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
2163020 TGTTTTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
779 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
2163085 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
844 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
** *
2163143 AAAATCTCAAATGCTCTTTAAAAGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2163208 ATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGGCCCCCCGATCG
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCG
* * * *
2163273 CCGGAACCCCAATGCCGAC-G--A--TGCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGA
130 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
*
2163333 AAAATGCGGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
195 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCTGAT
*
2163398 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
259 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
2163463 ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGTGGGGCGGGATGCGCAAGTCGGGGATTGGTCG
324 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
* * ** * * * *
2163528 GGTCCCCCTCTGTGTGCTGCCAATCCTATTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAG
389 GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTC-GATCTTAGACTGG
* * * *
2163593 GAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGAGCGGGCGGGCGGTCGGACGGGCTCTAC
453 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC
* *
2163658 GCCAGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
518 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
2163723 CTTCATATTTTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
583 CTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * **
2163786 CCTTCCCGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTT
647 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
** * *
2163851 AGGGTTCGGGATTTTTTAAAATTTTTTCAAAATGAGTTGTGGCCCCAAACTTGGTAGACGTGATC
712 AGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
2163916 CTTGTATTTTTGTTGGCATGCACAAAAAAGTTTAGGTAAAAACTCAAAGTGTAAAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
2163981 ACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
2164041 AAAATCTCAAACGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
2164106 ATAAGGGCCAAGTACCAGCACCCATCGTACATCACGTGCGAAC-CCCCCCCGGCTCCCCCGATCG
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCG
* * * * * * * *
2164170 CTGGAACCCCATTGCCATCGGTCACGTTCTCCGGCGATGCTCTGACGATGGTGCCCTGGCGAAGA
130 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * *
2164235 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGATACGGTCTGAT
195 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCTGAT
* * * * * *
2164300 CTTAGACTGAGAATGAACTCCGTATGCTTAAATTGGGAATCAGCTCTGTATGCCTAAGTCAACCC
259 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
2164365 ACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCCA
324 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCG
** * * *
2164430 AATCCCCCTCTGTGTGCCACCGAT-CTGCTGCCGCAACCCTTGGTCTAGTCTGATCTTAGACTGG
389 GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTC-GATCTTAGACTGG
* * ** * *
2164494 GAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCAAGCGGACGGGCGGGCAGGCACTAC
453 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTAC
* * * *
2164559 GTCGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGTTGGGTTTAGGCACAT
518 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
2164624 CTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAACTTCATACAAAGGTGCCTTAAGC
583 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
2164689 CCTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTTACGATTTTTGAAA-TGTTTT
648 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTT
* * * *
2164753 ACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATC
712 AGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
2164818 CTTTTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
2164883 ACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
2164943 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTGGATGAGGGGTAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
2165008 ATAAGGGCGAAGTACCAGCACCCATCGCACATCATGTACGCACA-CCCCCCGGCCCCCCGATCGT
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
* * * * *
2165072 CGAAACCTCAAT-CCTGTCGATCAGGTTCTTCGACGATGCTCC-ATCGATGGTGCCTCGGCAAAG
131 CGAAACCCCAATGCC-GTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAG
*
2165135 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC-G---G--
194 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCTGAT
*
2165190 --T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCC
259 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
2165240 ACGAAACGAGCATGTC-GGTGCTCAACCGGCCAGAGGGGCGAGATGCGCAA-CCGGGGATCGGTC
324 ACGAAACGAGCGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC
* * * ** *
2165303 GGGTCTCACTCT-TATTGCTACCGATGTTGCTGCCGCAACCCTCGGTCTGGTACAATCTTAGACT
388 GGGTCCCCCTCTGT-GTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACT
* * * * * *
2165367 AGAAATGAACTTCGTATGCCTAAGCCAACTGACGAAACCAGCGGACGGGCGGGTGGGCGGGCGGG
451 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-C-G-AG-CGGGCGGGCGGGCGGGCGGG
*
2165432 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
512 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
2165497 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
577 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
2165562 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTGTTTTTCACGATTTTTGAAAC
642 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
2165627 TTTTTACGGTTCGGGATTTTTTAAACTTTTTTTGGAAGGATTTTTAGCCCCAAACTTGGTAGACA
707 TTTTTAGGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
2165692 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTT-AGCTAAAAACTCGAAGTGTACAAGAT
772 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGAT
2165756 TTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
836 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
2165820 T
901 T
* *
2165821 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTAGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2165886 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCTGATCGC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
** * * * * * *
2165951 CGAAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACAAAGTA
131 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
** * * * * **
2166016 AAATATGGCACCAGCACATGCCCAAGCCCAGCTTGTGCTGTCGCAACCCTCGGTCCAGTCCAATC
196 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGGTCTGATC
* * *
2166081 CTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAATTCAACCCA
260 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * **
2166146 CGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCAACCGG
325 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGG
* * * *
2166211 GTCCCCCTCTGTGTGCTGCCGATCTTGTTGCCGCAACCCTCAGTCTGGTGCGATCTTAGACTGGG
390 GTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACTGGG
* *
2166276 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCGGGCGGGCGGTCACTACG
454 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACG
* * *
2166337 CCGGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATC
519 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** *
2166402 TTCATAATTT-TGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
584 TTCAT-ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
2166466 CTTCACGTGAAGTTTCATGGCAAGATGAATCGTTTTCAATTTTTCACGATTTTTGAATCTTTTT-
648 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * * *
2166530 GCGATTCAGGATTTTTTAAACTTTTTTCGGAAGGATTTTTAGCCCCAAACTTGGTAGACATGATC
713 G-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
2166595 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGATGCGTACAAGATTTTGTG
777 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
2166660 ACCATTTGAAAAAAGTGTCCGCATTTCAGATACTTTAATCGCTACTGGCAGCAAACCTGT
842 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
2166720 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
2166784 ATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCCGGCCCCCCCGATCA
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCG
* *
2166849 TCGGAACCCCAAT
130 CCGAAACCCCAAT
2166862 CGTACCTGTA
Statistics
Matches: 6408, Mismatches: 744, Indels: 274
0.86 0.10 0.04
Matches are distributed among these distances:
859 103 0.02
860 113 0.02
861 2 0.00
863 468 0.07
864 31 0.00
865 1 0.00
867 1 0.00
870 1 0.00
871 40 0.01
873 3 0.00
874 30 0.00
875 137 0.02
876 5 0.00
877 8 0.00
878 143 0.02
879 449 0.07
880 7 0.00
881 1 0.00
882 1 0.00
883 3 0.00
884 2 0.00
885 3 0.00
888 4 0.00
889 2 0.00
891 38 0.01
892 3 0.00
895 3 0.00
896 71 0.01
897 148 0.02
898 1169 0.18
899 530 0.08
900 11 0.00
901 257 0.04
902 733 0.11
903 586 0.09
904 833 0.13
905 372 0.06
906 95 0.01
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGC
CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGG
TCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGGG
TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
Found at i:2166118 original size:26 final size:26
Alignment explanation
Indices: 2166082--2166132 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2166072 AGTCCAATCC
2166082 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
2166108 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2166133 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2167005 original size:12 final size:12
Alignment explanation
Indices: 2166985--2167136 Score: 68
Period size: 12 Copynumber: 12.5 Consensus size: 12
2166975 CTTTTCTGTT
*
2166985 TTATGTATTTTA
1 TTATTTATTTTA
2166997 TTATTTATTATTA
1 TTATTTATT-TTA
2167010 TTATATGTATATTT-
1 TTAT-T-TAT-TTTA
*
2167024 TTACTTA-TTTA
1 TTATTTATTTTA
2167035 TTTATTTATTTT-
1 -TTATTTATTTTA
*
2167047 TCTATTAATGTTTA
1 T-TATTTAT-TTTA
*
2167061 -TATGTATTTTA
1 TTATTTATTTTA
* *
2167072 TTTATATAGTTCTA
1 -TTATTTA-TTTTA
*
2167086 -TATTTATTATA
1 TTATTTATTTTA
**
2167097 -TA-TTATAAT-
1 TTATTTATTTTA
2167106 TTATTTATTATTA
1 TTATTTATT-TTA
*
2167119 TTATTTTTTTTA
1 TTATTTATTTTA
2167131 TTATTT
1 TTATTT
2167137 TTCTTGTAAT
Statistics
Matches: 109, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
10 11 0.10
11 15 0.14
12 42 0.39
13 27 0.25
14 8 0.07
15 5 0.05
16 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:2167022 original size:21 final size:21
Alignment explanation
Indices: 2166998--2167122 Score: 68
Period size: 21 Copynumber: 5.8 Consensus size: 21
2166988 TGTATTTTAT
2166998 TATTTATTATTATTATATGTA
1 TATTTATTATTATTATATGTA
2167019 TATTT-TTACTTATT-TAT-T-
1 TATTTATTA-TTATTATATGTA
*
2167037 TATTTATTTTTCTATTA-ATGTTTA
1 TATTTA-TTAT-TATTATATG--TA
*
2167061 TATGTATT-TTATTTATATAGTTCTA
1 TATTTATTATTA-TTATAT-G---TA
2167086 TATTTATTATATATTATAAT-T-
1 TATTTATTAT-TATTAT-ATGTA
2167107 TATTTATTATTATTAT
1 TATTTATTATTATTAT
2167123 TTTTTTTATT
Statistics
Matches: 84, Mismatches: 4, Indels: 33
0.69 0.03 0.27
Matches are distributed among these distances:
18 5 0.06
19 2 0.02
20 20 0.24
21 22 0.26
22 5 0.06
23 5 0.06
24 6 0.07
25 10 0.12
26 5 0.06
27 4 0.05
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (21 bp):
TATTTATTATTATTATATGTA
Found at i:2167107 original size:17 final size:17
Alignment explanation
Indices: 2167068--2167124 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
2167058 TTATATGTAT
*
2167068 TTTATTTATATAGTTCTATA
1 TTTA-TTATATA-TTATA-A
2167088 TTTATTATATATTATAA
1 TTTATTATATATTATAA
*
2167105 TTTATT-TATTATTATTA
1 TTTATTATA-TATTATAA
2167122 TTT
1 TTT
2167125 TTTTTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 4 0.12
19 7 0.21
20 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTATTATATATTATAA
Found at i:2167130 original size:18 final size:19
Alignment explanation
Indices: 2166997--2167135 Score: 79
Period size: 18 Copynumber: 7.6 Consensus size: 19
2166987 ATGTATTTTA
2166997 TTATTTATTATTATTATAT
1 TTATTTATTATTATTATAT
2167016 GTATATTT-TTACTTATT-TAT
1 -T-TATTTATTA-TTATTATAT
*
2167036 TTATTTA-T-TT-TTCTAT
1 TTATTTATTATTATTATAT
* *
2167052 TAATGT-TTA-TATGTAT-T
1 TTATTTATTATTAT-TATAT
*
2167069 TTATTTA-TA-TAGTTCTA-
1 TTATTTATTATTA-TTATAT
2167086 -TATTTATTATATATTATAAT
1 TTATTTATTAT-TATTAT-AT
2167106 TTATTTATTATTATTAT-T
1 TTATTTATTATTATTATAT
*
2167124 TTTTTTATTATT
1 TTATTTATTATT
2167136 TTTCTTGTAA
Statistics
Matches: 94, Mismatches: 8, Indels: 36
0.68 0.06 0.26
Matches are distributed among these distances:
15 2 0.02
16 17 0.18
17 14 0.15
18 24 0.26
19 4 0.04
20 13 0.14
21 20 0.21
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (19 bp):
TTATTTATTATTATTATAT
Found at i:2167137 original size:12 final size:12
Alignment explanation
Indices: 2167106--2167154 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
2167096 ATATTATAAT
*
2167106 TTATTTATTATTA
1 TTATTT-TTTTTA
2167119 TTATTTTTTTTA
1 TTATTTTTTTTA
2167131 TTATTTTTCTTGTA
1 TTATTTTT-TT-TA
*
2167145 ATATTTTTTT
1 TTATTTTTTT
2167155 GATTTATCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 13 0.41
13 10 0.31
14 9 0.28
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (12 bp):
TTATTTTTTTTA
Found at i:2168192 original size:16 final size:16
Alignment explanation
Indices: 2168159--2168197 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2168149 TTAGATTAGG
*
2168159 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
2168175 TTTATCTTAAT-TTATT
1 TTTAT-TTAATATTATT
2168191 TTTATTT
1 TTTATTT
2168198 TGTTTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 14 0.67
17 5 0.24
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:2168227 original size:14 final size:14
Alignment explanation
Indices: 2168200--2168239 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
2168190 TTTTATTTTG
*
2168200 TTTTCTTTTCTTTAT
1 TTTTCTATT-TTTAT
2168215 TTTTCTATTTTTAT
1 TTTTCTATTTTTAT
*
2168229 TATTCTATTTT
1 TTTTCTATTTT
2168240 CTTTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTCTATTTTTAT
Found at i:2168244 original size:17 final size:17
Alignment explanation
Indices: 2168205--2168244 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
2168195 TTTTGTTTTC
*
2168205 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
2168222 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
2168236 TTTTCTTTA
1 TTTTCTTTA
2168245 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:2168325 original size:58 final size:59
Alignment explanation
Indices: 2168247--2168481 Score: 343
Period size: 58 Copynumber: 4.0 Consensus size: 59
2168237 TTTCTTTAAA
2168247 TAAAAATCAAAATTTCCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTCCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* ***
2168307 TAAAAAT-AAATTTTCAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** *
2168365 TGGAAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAA-TTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
2168425 TAAAAAT-AAATTTCCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAATTTCCAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
2168482 CTACACAAGA
Statistics
Matches: 157, Mismatches: 14, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
58 89 0.57
59 13 0.08
60 55 0.35
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (59 bp):
TAAAAATCAAATTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:2168391 original size:118 final size:118
Alignment explanation
Indices: 2168250--2168481 Score: 378
Period size: 118 Copynumber: 2.0 Consensus size: 118
2168240 CTTTAAATAA
*
2168250 AAATCAAAATTTCCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATCAAAATTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
2168314 AAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
65 AAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
*
2168368 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
1 AAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
* *
2168433 AATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
66 AATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
2168482 CTACACAAGA
Statistics
Matches: 106, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
118 93 0.88
119 13 0.12
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (118 bp):
AAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
AATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:2172248 original size:21 final size:20
Alignment explanation
Indices: 2172215--2172257 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
2172205 ACAATGGATG
*
2172215 AAAAATGA-GAAAAGA-GAA
1 AAAAATGATGAAAAAAGGAA
2172233 AAAAATGATGAAAAAAGGAA
1 AAAAATGATGAAAAAAGGAA
2172253 AAAAA
1 AAAAA
2172258 AAAAGAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.36
19 6 0.27
20 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (20 bp):
AAAAATGATGAAAAAAGGAA
Found at i:2172258 original size:21 final size:18
Alignment explanation
Indices: 2172215--2172308 Score: 62
Period size: 17 Copynumber: 5.6 Consensus size: 18
2172205 ACAATGGATG
*
2172215 AAAAATGAGAAAAGAGAA
1 AAAAATGAGAAAAAAGAA
2172233 AAAAATGATGAAAAAAGGAA
1 AAAAATGA-GAAAAAA-GAA
2172253 AAAAA--A-AAAGAAAG--
1 AAAAATGAGAAA-AAAGAA
2172267 AAAAA--AG-AAAAAGAA
1 AAAAATGAGAAAAAAGAA
* *
2172282 AGAAATGAG-AAAATGAA
1 AAAAATGAGAAAAAAGAA
*
2172299 AAAAAGGAGA
1 AAAAATGAGA
2172309 TTCAAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
13 4 0.06
14 8 0.13
15 4 0.06
16 4 0.06
17 19 0.31
18 9 0.15
19 6 0.10
20 8 0.13
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.05
Consensus pattern (18 bp):
AAAAATGAGAAAAAAGAA
Found at i:2172269 original size:24 final size:24
Alignment explanation
Indices: 2172240--2172303 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 24
2172230 GAAAAAAATG
2172240 ATGAAAAAAGGAAAAAAAAAAAGAA
1 ATGAAAAAA-GAAAAAAAAAAAGAA
*
2172265 A-GAAAAAAG--AAAAAGAAAGAA
1 ATGAAAAAAGAAAAAAAAAAAGAA
*
2172286 ATGAGAAAATGAAAAAAA
1 ATGA-AAAAAGAAAAAAA
2172304 GGAGATTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
21 12 0.36
22 2 0.06
23 6 0.18
24 7 0.21
25 6 0.18
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (24 bp):
ATGAAAAAAGAAAAAAAAAAAGAA
Found at i:2172292 original size:17 final size:17
Alignment explanation
Indices: 2172217--2172299 Score: 66
Period size: 17 Copynumber: 4.9 Consensus size: 17
2172207 AATGGATGAA
*
2172217 AAATGAGAAAAGAGAAAA
1 AAATGAGAAAA-AGAAAG
*
2172235 AAATGATGAAAAAAGGAA-
1 AAATGA-G-AAAAAGAAAG
2172253 AAA--A-AAAAAGAAAG
1 AAATGAGAAAAAGAAAG
**
2172267 AAAAAAGAAAAAGAAAG
1 AAATGAGAAAAAGAAAG
*
2172284 AAATGAGAAAATGAAA
1 AAATGAGAAAAAGAAA
2172300 AAAAGGAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
13 8 0.15
14 3 0.06
16 2 0.04
17 23 0.43
18 9 0.17
19 5 0.09
20 4 0.07
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (17 bp):
AAATGAGAAAAAGAAAG
Found at i:2173628 original size:41 final size:42
Alignment explanation
Indices: 2173552--2173633 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 42
2173542 ATGATTGTAA
2173552 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
* *
2173594 AGGAGCAATTTATTTTCC-AAAGTCTTGGTGCCTCTGTTTA
1 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTA
2173634 TCCAAAAGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.55
42 17 0.45
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:2173678 original size:67 final size:67
Alignment explanation
Indices: 2173567--2173760 Score: 269
Period size: 67 Copynumber: 3.0 Consensus size: 67
2173557 CAATTTACTT
*
2173567 TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCTTGGTGCCTCTGTT
1 TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTT
2173632 TA
66 TA
*
2173634 TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTG-
1 TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGT
2173698 TT-
65 TTA
* * * *
2173700 T---AGAG--G-AGCGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTT
1 TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTT
2173759 TA
66 TA
2173761 GAGGAGCAAT
Statistics
Matches: 117, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
59 18 0.15
60 31 0.26
61 1 0.01
63 3 0.03
66 1 0.01
67 46 0.39
68 17 0.15
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (67 bp):
TCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTT
TA
Found at i:2173714 original size:18 final size:18
Alignment explanation
Indices: 2173691--2173726 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2173681 AAGTCGTGGT
2173691 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
2173709 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
2173727 AATTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (18 bp):
GCCTCTGTTTAGAGGAGC
Found at i:2173762 original size:59 final size:60
Alignment explanation
Indices: 2173649--2173767 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 60
2173639 AAGTCGTGGT
2173649 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
* *
2173709 GCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
2173768 AATTTATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 29 0.51
60 28 0.49
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (60 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
Found at i:2173838 original size:43 final size:41
Alignment explanation
Indices: 2173709--2173850 Score: 232
Period size: 40 Copynumber: 3.4 Consensus size: 41
2173699 TTAGAGGAGC
2173709 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGT
2173750 GCCTCTGTTTAGAGGAGCAATTTA-TTTTCAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGT
* * *
2173790 GCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCAATTTAT-TTT-TCAAAGTCGTGGT
2173833 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
2173851 TTTGGTAAAA
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
40 40 0.42
41 24 0.25
42 3 0.03
43 28 0.29
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGT
Found at i:2173869 original size:7 final size:7
Alignment explanation
Indices: 2173857--2173911 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
2173847 GAGCTTTGGT
*
2173857 AAAAAAA
1 AAAAAAC
2173864 AAAAAAC
1 AAAAAAC
2173871 AAAAAAC
1 AAAAAAC
2173878 AAAAAAC
1 AAAAAAC
2173885 ATAAAAA-
1 A-AAAAAC
*
2173892 AACATAA-
1 AA-AAAAC
2173899 AAAAAAC
1 AAAAAAC
2173906 AAAAAA
1 AAAAAA
2173912 TGACAATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 4 0.10
7 33 0.79
8 5 0.12
ACGTcount: A:0.87, C:0.09, G:0.00, T:0.04
Consensus pattern (7 bp):
AAAAAAC
Found at i:2173876 original size:10 final size:10
Alignment explanation
Indices: 2173857--2173911 Score: 60
Period size: 9 Copynumber: 5.6 Consensus size: 10
2173847 GAGCTTTGGT
2173857 AAAAAAAAA-
1 AAAAAAAAAC
*
2173866 AAAACAAAA-
1 AAAAAAAAAC
*
2173875 AACAAAAAAC
1 AAAAAAAAAC
*
2173885 ATAAAAAAAC
1 AAAAAAAAAC
2173895 ATAAAAAAAAC
1 A-AAAAAAAAC
2173906 AAAAAA
1 AAAAAA
2173912 TGACAATGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
9 15 0.39
10 14 0.37
11 9 0.24
ACGTcount: A:0.87, C:0.09, G:0.00, T:0.04
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:2174228 original size:17 final size:18
Alignment explanation
Indices: 2174132--2174268 Score: 67
Period size: 20 Copynumber: 7.7 Consensus size: 18
2174122 TTATGATTTA
*
2174132 TTATTATTATATGTATATTT
1 TTATTA-TATAT-TATATAT
* *
2174152 TTACTTATTTATTTATTTAT
1 TTA-TTATATA-TTATATAT
* * *
2174172 TTATTTTTCTGTTA-ATAT
1 TTA-TTATATATTATATAT
*
2174190 TTA-TATGTATT-T-TAT
1 TTATTATATATTATATAT
*
2174205 TTA-TATA-ATTCTATAT
1 TTATTATATATTATATAT
2174221 TTATTATATATTATA-AT
1 TTATTATATATTATATAT
2174238 TTATT-TATTATTATTATTAT
1 TTATTATA-TATTA-TA-TAT
2174258 TTATTAT-TATT
1 TTATTATATATT
2174269 TTTCTTGTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
14 3 0.03
15 10 0.11
16 13 0.14
17 16 0.17
18 13 0.14
19 7 0.08
20 25 0.27
21 5 0.05
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TTATTATATATTATATAT
Found at i:2174234 original size:7 final size:6
Alignment explanation
Indices: 2174221--2174268 Score: 51
Period size: 7 Copynumber: 7.3 Consensus size: 6
2174211 AATTCTATAT
*
2174221 TTATTA TATATTA TAATTTA TTTATTA TTATTA TTATTTA TTATTA TT
1 TTATTA T-TATTA TTA-TTA -TTATTA TTATTA TTA-TTA TTATTA TT
2174269 TTTCTTGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
6 16 0.44
7 18 0.50
8 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTATTA
Found at i:2174234 original size:10 final size:10
Alignment explanation
Indices: 2174201--2174267 Score: 57
Period size: 10 Copynumber: 6.7 Consensus size: 10
2174191 TATATGTATT
2174201 TTATT-TATA
1 TTATTATATA
* *
2174210 TAATTCTATA
1 TTATTATATA
2174220 TTTATTATATA
1 -TTATTATATA
* *
2174231 TTATAATTTA
1 TTATTATATA
2174241 TTTATTAT-TA
1 -TTATTATATA
*
2174251 TTATTATTTA
1 TTATTATATA
2174261 TTATTAT
1 TTATTAT
2174268 TTTTCTTGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
9 11 0.23
10 23 0.48
11 14 0.29
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATA
Found at i:2174250 original size:3 final size:3
Alignment explanation
Indices: 2174221--2174268 Score: 51
Period size: 3 Copynumber: 14.7 Consensus size: 3
2174211 AATTCTATAT
*
2174221 TTA TTA TATA TTA TAA TTTA TTTA TTA TTA TTA TTA TTTA TTA TTA TT
1 TTA TTA T-TA TTA TTA -TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TT
2174269 TTTCTTGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
3 28 0.70
4 12 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2174252 original size:92 final size:92
Alignment explanation
Indices: 2174110--2174283 Score: 218
Period size: 92 Copynumber: 1.9 Consensus size: 92
2174100 TTTTCTTTTG
* *
2174110 TATTTTATGATTTTATGATTTATTATTATTATATGTATATTTTTACTTA-T-TTATTTATTTATT
1 TATTTTATAATTCTATGATTTATTATTATTATATGTATATTTTTACTTATTATTATTTA-TTA-T
2174173 TATTTTTC-TGTTAATATTTATATGTATTT
64 TATTTTTCTTG-TAATATTTATATGTATTT
2174202 TATTTATATAATTCTAT-ATTTATTATATATTATAAT-T-TATTTATTA-TTATTATTATTTATT
1 TATTT-TATAATTCTATGATTTATTAT-TATTAT-ATGTATATTT-TTACTTATTATTATTTATT
2174263 ATTATTTTTCTTGTAATATTT
62 ATTATTTTTCTTGTAATATTT
2174284 TTTTGATTTA
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
92 39 0.53
93 25 0.34
94 9 0.12
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (92 bp):
TATTTTATAATTCTATGATTTATTATTATTATATGTATATTTTTACTTATTATTATTTATTATTA
TTTTTCTTGTAATATTTATATGTATTT
Found at i:2174263 original size:16 final size:16
Alignment explanation
Indices: 2174113--2174268 Score: 73
Period size: 16 Copynumber: 9.9 Consensus size: 16
2174103 TCTTTTGTAT
* *
2174113 TTTATGATT-TTATGA
1 TTTATTATTATTATTA
2174128 TTTATTATTATTA-TA
1 TTTATTATTATTATTA
* *
2174143 TGTA-TATTTTTACTTA
1 TTTATTATTATTA-TTA
2174159 TTTA-T-TTATTTATTTA
1 TTTATTATTA-TTA-TTA
* * *
2174175 TTT-TT-CTGTTAATA
1 TTTATTATTATTATTA
2174189 TTTA-TATGTATT-TTA
1 TTTATTAT-TATTATTA
* *
2174204 TTTA-TATAATTCTATA
1 TTTATTATTATTAT-TA
*
2174220 TTTATTATATATTATAA
1 TTTATTAT-TATTATTA
2174237 TTTATTTATTATTATTA
1 TTTA-TTATTATTATTA
2174254 -TTATTTATTATTATT
1 TTTA-TTATTATTATT
2174269 TTTCTTGTAA
Statistics
Matches: 110, Mismatches: 18, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
14 16 0.15
15 27 0.25
16 44 0.40
17 15 0.14
18 8 0.07
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:2175243 original size:17 final size:16
Alignment explanation
Indices: 2175209--2175248 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
2175199 TTAGATTAGG
*
2175209 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
2175225 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
2175242 TTTATTT
1 TTTATTT
2175249 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:2175396 original size:58 final size:59
Alignment explanation
Indices: 2175300--2175593 Score: 409
Period size: 58 Copynumber: 5.0 Consensus size: 59
2175290 TTTCTTTAAA
* *
2175300 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAAAAAAGTATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* **
2175361 TGAAAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** * *
2175419 TGGAAATCAAAGTTTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
2175478 TAAAAATAAATTTCCAAAAAAA-TATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAAGTA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
2175536 TAAAAATAAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
2175594 CTACACAAGA
Statistics
Matches: 211, Mismatches: 16, Indels: 14
0.88 0.07 0.06
Matches are distributed among these distances:
58 112 0.53
59 87 0.41
60 6 0.03
61 6 0.03
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (59 bp):
TAAAAATAAATTTTCAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:2175456 original size:117 final size:117
Alignment explanation
Indices: 2175300--2175593 Score: 423
Period size: 117 Copynumber: 2.5 Consensus size: 117
2175290 TTTCTTTAAA
*
2175300 TAAAAATCAAAATTTCCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 TAAAAATCAAAATTT-C-AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
2175364 AAATAAATTTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
63 AAATAAATTTCCAAAAAAAGAGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
2175419 TGGAAATCAAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAA
1 TAAAAATCAAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* *
2175484 TAAATTTCCAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
66 TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
2175536 TAAAAAT-AAATTTTCAAAAAAAGTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
2175594 CTACACAAGA
Statistics
Matches: 158, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
116 14 0.09
117 118 0.75
118 14 0.09
119 12 0.08
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTCCAAAAAAAGAGTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:2176241 original size:26 final size:26
Alignment explanation
Indices: 2176191--2176243 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2176181 CCGATCCGAT
**
2176191 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2176217 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2176243 C
1 C
2176244 CTGAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2177124 original size:26 final size:26
Alignment explanation
Indices: 2177086--2177138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2177076 TCGATCTGAT
2177086 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
2177112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2177138 C
1 C
2177139 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2178913 original size:26 final size:26
Alignment explanation
Indices: 2178884--2178936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2178874 CTGATCCGAT
2178884 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
2178910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
2178936 C
1 C
2178937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:2180246 original size:906 final size:904
Alignment explanation
Indices: 2176090--2185331 Score: 11568
Period size: 895 Copynumber: 10.2 Consensus size: 904
2176080 AGGTTCTTAA
* * * * *
2176090 CGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGACACCAGCACATGCCCGATCCCAGCG
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * **
2176155 TGTGCTGCTGCAACCCTCGATCCGATCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTT
66 TGTGCTGCCGAAACCCTCG----G-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
2176220 AGATTGGGAATGAGCTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGG
126 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
2176285 CCAGAGGGGCGGGATGCACAAGCCGTGGATCAACCGGGTCCTCCTCTGTGTGCTGTCGATCATGC
191 CCAGAGGGGCGGGATGCGCAAGCCG-GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * * * * *
2176350 TGCTGCAACCCTCGGTCTGGTCTAATCTTAGA-TTAGGAATGAAC-TCTGTATGCCAAAGCCAAT
255 TGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTC-GTATGCCTAAGCCAAC
* * * * * * * *
2176413 CGACAAAATGAACAGGCGGGCGGGCGTGCAGGCACTACGCAC-GCCTGAGAGACAGGATGCGTAA
319 CGACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGGATGCGCAA
* *
2176477 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
383 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
2176542 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGAC
448 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
2176607 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAAATTTTTT
513 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * * *
2176672 TGAAAGGAGTTTTGGCACCGAACTTGGTAGACGTGATCCTTATATTTTTT-TTGGCATGCACAAA
578 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAA
*
2176736 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
642 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
2176801 CAGACACTTTAATGGCTACTAGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
707 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * ** *
2176866 GTTCTCAAGGTTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
772 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
2176931 TCATGTGCGCACACCACCCTCCGGCCCGCCCGATCATCGGAACCCCAATGCCGCCGGTCAGG---
837 TCATGTGCGCACACC-CCC-CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
2176993 ---T--
899 TCCTGG
* * * * **
2176994 ---T-CTCCGACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAACACATGCCCGAGCCTGGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
2177055 TGTGCTGCCAAAACCCTCGGT-TCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
66 TGTGCTGCCGAAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
2177119 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGTCGGCCAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *
2177184 AGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCC
195 AGGGGCGGGATGCGCAAGC-CGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * *
2177249 ACAGCCCTCGGTCGGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACG
259 ACAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACG
* * * * *
2177313 AAACGAACGGGCGGGCGGGCGGGTGGGCACTACGTCGGCGAGAGAGACGGGATGC-CAAGCCGTG
324 AAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * ** * *
2177377 AATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAAAGCAATTTTTA
389 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
2177442 TGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAATTTTAATGGCAAGACGACTCG
454 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
2177507 TTTTCTATTTTTCATGATTTTCGAAAGTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTCGGACG
519 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * *
2177571 GATTTTTGGTCCCAAATTTGGTAGACGTGATCCTTATTTTTTTGTTGGCATGCAGAAAAAAATTC
584 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTC
* * * *
2177636 AGCCAAAAACTCGAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACAC
649 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2177701 TTTAATAGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
714 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
2177766 AGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
779 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
2177831 CGCACACCCCTCCCGGCTCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCTGGATCTCC-GG
844 CGCACACCCC-CCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGG
* * * * *
2177893 CAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGGACGTGGCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
2177958 TGTGCTGCCGTAACCCTTGGTCTGGTCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACT
66 TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
2178023 GGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
2178088 GGGGTGGGATGCACAAGCCGGGGATCGATCGGGTCTCCCTCTGCGTGCTGCCAAT-CTGATTGCC
196 GGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG-CTGCC
* *
2178152 ACAACCGTCAATCCGGTCTGATCTTAGACT-AGGAATGAACTTCGTATGCCTAAGCCAACCGACG
259 ACAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACG
** * * * ** *
2178216 AAATGAGCGGGCGGGCGGGCATGCAGGCACTACTCCAGCCAGAGAGACAAGATGCGCAAGTCGTG
324 AAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
2178281 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
389 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
2178346 TGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCTAGACGACTCG
454 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * * *
2178411 TTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTAAAAAATTTTTCAGAAG
519 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
2178476 GAGTTTTGGCCCCGAACTTTGTAGACGTGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTC
584 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTC
2178541 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
649 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
2178606 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
714 TTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* **
2178671 AGGTTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
779 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** *
2178736 CGCACACCACCCTCCGGCCCGCTCGATCGTTAGAACCCCAATGCCGTCGGTCAGG------T--
844 CGCACACC-CCC-CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGG
* * * *
2178792 ---T-CTCCGACGATGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCTCGAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** *
2178853 TGTGCTGTTGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACT
66 TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * **
2178918 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGGTCAGTAGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * *
2178983 AGGGCGGGATGCGCAAACTGGGGATCGATCTGGTCCCTCTCTACGTGCTGCCGATACTGCTGCCA
196 GGGGCGGGATGCGCAAGC-CGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* *
2179048 CAACCCTCAGTCGGGTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGA
260 CAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
* * * * * * * *
2179112 AACGAACAGGCGGGCGGGCGGGTGGGCACTACGTCGGCAAGAGAGACGGGATGCACAAGCCGTGA
325 AATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ** * *
2179177 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAAAGCAATTTTTAT
390 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
2179242 GGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCCT
455 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * *
2179307 TTTTTATTTTTCATGATTTTTGAAAGGTTTTACGGTTTGGGGTTTTTTAAAATTTTTTCGGATGG
520 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
2179372 ATTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTTTTTTTGTTGGCATGCAAAAAAAAATTCA
585 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
2179437 GCCAAAAACTCAAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACT
650 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2179502 TTAATAGCTATTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
715 TTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
2179567 GGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAGATCATGTGC
780 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
2179632 GTACACCCCTCCCGGCCCCCCGATCG-CCGAACCCCAATGCCGTCGGTCAGGTTCTCCTGG
845 GCACACCCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGG
* *
2179692 CAATGCTTCCGACGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGGACATGCCCGAGCCCAGC
1 CGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
2179756 ATGTGCTG-CGTAACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGAC
65 ATGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
2179820 TGGGAAATGGACTCCGTATGCCCTAAGCCAACCCACGAAATGAGCG-CCGGGCGCTCAGCCTGCC
130 TGGG-AATGAACTCCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * *
2179884 AGAGCGGTGTGGATGCCGCAAGCCGGGATCCGATCGGGTCTCCCTCTGCGTGCTGCCAATCCGGC
193 AGAGGGGCG-GGATG-CGCAAGCCGGGAT-CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * *
2179949 TACCACAAGCATCAGTCCGGTCCGATCTTAGACTGA-GAATGAACTTCGTATGCCTAAGCCAACT
255 TGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACC
* *** * * *
2180013 GACGAAATGAGTGGGCGGGCGGGCATACAGGCACTACGCCGGCCAGAGAGACAGGATACGCAAGC
320 GACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
2180078 TGTGCATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATT
385 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
2180143 TTTATGGCTTGTAAATTCATACAATAGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGA
450 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
2180208 CTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAAATTTTTTCG
515 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
2180273 GATGGATTTTTGGCCCCGAACTTGGTAGACGTGATCCGTGTATTTTTT-TTGGCATGCACAAAAA
580 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAA
*
2180337 AATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
644 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
2180402 GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
709 GACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * **
2180467 TCTCAAGGTTTGATGAGAGATAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
774 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
2180532 ATGTGCGCACCCCACCCTCCGGCCCGCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG-----
839 ATGTGCGCACACC-CCC-CCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
2180592 -T--
901 CTGG
* * * *
2180593 ---T-CTCCGACGATGGTGCCCCGACAAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
2180654 TGTGCTGTCGAAACCCTCGGTCCGATCTGATCTTAGACTGAGAATCAACTCCGTATGCTTAGACT
66 TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
2180719 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
2180784 GGGGCGGGATACGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
196 GGGGCGGGATGCGCAAGC-CGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
*
2180849 CAACCCTCAGTCGGGTCTGATCTTAGACTG-GGAATGAAC-TCTGTATGCCTAAGCCAACCGACG
260 CAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTC-GTATGCCTAAGCCAACCGACG
** * * * *
2180912 AAACAAACGGGCGGACGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
324 AAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * ** * **
2180977 GATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAAAGAAATTTTTA
389 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
2181042 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAATTTTCATGGCAAGACGACTCG
454 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
2181107 TTTTCTATTTTTCATGATTTTCGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGACA
519 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA-A
* * * * * *
2181172 -GATTTTTGACTCTAAACTTGGTAGACATGATCCTTGTTTTTTTTTTTGGCATGCAAAAAAAAAA
583 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TTTTTTTGTTGGCATGC-ACAAAAAAA
* * * *
2181236 TTCAGCCAAAAACTCGAAGTCTACAATATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGA
646 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
2181301 CACTTTAATAGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
711 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
2181366 TCGAGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCAT
776 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
2181431 GTGCGCACACCCCTCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G
841 GTGCGCACACCCC-CCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTG
2181495 G
904 G
* *
2181496 CAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAG-ACATGCCCGAGCCTAGC
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGC
* * * * *
2181560 ATGTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGAC
65 ATGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
2181625 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGTGCTCAGCCGGCTAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
*** * * * ** * * *
2181690 AGGTATGGGATGCGCAAGCCAGGATCGGTAGGGTCCCCCTCTATGTGCTCCCGATCCTACTACCA
195 AGGGGCGGGATGCGCAAGCCGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * *
2181755 CAACCCTCAGTCTGGTCCGATCTTAGACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
260 CAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
* * *
2181819 AATGA------------GCGGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCCATGG
325 AATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
2181872 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
390 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
2181937 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGCACGACTCG
455 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCG
* * * *
2182002 TTTTCTTTTTTTCA-GA-TTTTAAAACCTTTTTTCCGGTTCGGGA-TTTTTAAAATTTTTTTGGA
519 TTTTCTATTTTTCATGATTTTTGAAA-C-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
2182064 AGAGAGTTTTGGCCCCAAACTT-GTAGTAGCGTGATTCCTGTGTATTTTTGTTGGGCATGCA-AA
582 AG-GATTTTTGGCCCCAAACTTGGTAG-A-CGTGA-TCCT-TGTTTTTTTGTT-GGCATGCACAA
* * * * *
2182127 AAAAATTTAGCTAAAAACTTGAAGTTGTAACAAGATTTTGTGACAATTCG-AAAAGGTGTCCCCA
641 AAAAATTCAGCTAAAAACTCGAAG-TGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
2182191 TTCCCAGACACTTTAATTGGCCACTGGGCCAGCTAAACCTGTAAAATCTC-AATGCTCTTTAAGG
704 TT-TCAGACACTTTAA-TAGCTACT-GG-CAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
2182255 GGGTGGTGAGTTCCTTCGGAGGTTTGGCATGAGCGGATACGGGGCCAATAT-AGGGCCAAGTACC
764 GGGT-GTGAGTT-C-TC-GAGGTTT-G-ATGAG-GGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
2182319 AGGCACCCATCGGGTACATCATGTTGCGCACA-CCCCCTGGCCCCCCCCGATCATCCAGAACCTC
822 A-GCACCCATC--GCACATCATG-TGCGCACACCCCCCCGG--CCCCCCGATCGT-CGGAACCCC
* *
2182383 AATGCCGGCCAGTCAGCGTTCTCGTGGG
880 AATGCC-GCCGGTCAG-GTTCTCCT-GG
** * * * *
2182411 CGATCGCTGTCCGGTGATGGTGCCCCGATGAAGAAAAATGCAGTACCAACACATGCCCGAGCCCA
1 CGAT-GC--TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
2182476 GCATGTGCTGCTGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
63 GCATGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
2182541 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAAC-AGGCGTGTGGGCGCTCAGCCGAC
128 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGC
* * * *
2182605 CAGAGGGGCAGGATGCGTAAGCCGGGGATTGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
192 CAGAGGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
*** * * * * *
2182670 GCTGTAACCCTCAGTTCAGTTTGATCTTAGACT-AGGAATGAACTCCGTATGCCAAAGCCAACCG
256 GCCACAACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCG
** * * *
2182734 ACGAAATGAGCGGGCGGGCGTACGGGCGGGTACTACGCCGGCCAGAGACATGGGATGCGCAAGCC
321 ACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* ** * *
2182799 ATGGATCGATAGGGTGGTAGGTGGGTTTATACACATCTTCACATTTC--CATGTGCCAATGCCAA
386 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA--TGCCAATGCCAT
* * *
2182862 TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTGATGGCAAGACG
449 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *** *
2182927 ACTCGTTTTCTATTTTTCATGATTTTGGAAAGTTTTCGTGGTTCGGAATTTTTTAAAATTTTTTC
514 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
2182992 GAAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTT-TTGGCATGCACAAA
579 GGAAGG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAA
* *
2183055 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTATTT
642 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
2183120 CAGACACTTTAA-AGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTG
707 CAGACACTTTAATA-GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
2183184 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGATCCAAGTACCAGCACCCATCGCAC
771 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
2183249 ATCATGTGCGCACAAGCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTC
836 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
*
2183314 C-GA
901 CTGG
* ** ** * *
2183317 CGATGCTCCTACGATGGTGCCCCGGTGAAGAAAAATGCAACACCAGCACATGCTCGAGCCCAGTA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
** * * * * *
2183382 TGTGCTGTTGAAACGCTCGGCCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
66 TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
2183447 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAGCTGGCCAGA
131 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** * * * *
2183512 GGGGCGGGATG-GCAAGCCAGGGATCGGTCGAGTCCCCCGCTGCATGCCACCGATCTTACTACCG
196 GGGGCGGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * *
2183576 CAACCCTCAGTCTGGT-TCGATCTTAGACT-AGGAATGAACTTCGTATGCCTAAGCAAACTGACG
260 CAACCCTCAGTCCGGTCT-GATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACG
* * * ** **
2183639 AAACGAGCGGGCGGGCGGGCGGGCGGGAAGTACATCGGCCAGAGAGACGGGATTTGCAAGCCGTG
324 AAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
2183704 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
389 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * *
2183769 TGGCTTGTAAATTAAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCG
454 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * **
2183834 TTTTCTCTTTTTCACGATTTTTGAAACTTTTTGA-GGTTCAAGATTTTTTAAAATTTTTTCGGAA
519 TTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * *
2183898 GGATTTTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTT-TTGTCATGCACAAAAAAAT
583 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCACAAAAAAAT
* * * *
2183962 TCGGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGAC
647 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
2184027 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
712 ACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
2184092 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
777 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
2184157 TGCGCACACCCCCCCTAGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGG
842 TGCGCACACCCCCCC--GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGG
** * ** * *
2184221 CGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCA
1 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
2184286 TGTGCTGCCGCAATCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT-CGTTAGAC
66 TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC-TTAGAC
* * * *
2184350 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCAG
130 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** * ** * *
2184415 ACGGGCGAGATGCGCAAGTTAGGGATTGGCCAGGTCCCCCTCTGCGTGCTACCGATCCTG-TGCC
195 AGGGGCGGGATGCGCAAG-CCGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* *
2184479 GCAACCCTC-GATCTC-GTCTGATCTTAGACTG-GGAATGAAC-TCTGTATGCCTAAGCCAACCA
259 ACAACCCTCAG-TC-CGGTCTGATCTTAGACTGAGGAATGAACTTC-GTATGCCTAAGCCAACCG
* * * *
2184540 ATGAAA--A--GAGCGGGCGGGCGGGCGGGCACTACGTCGGCC-GAGAGACGGGATGCCCAAGCC
321 ACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
2184600 ATGGATCGATA-GGTGCGTAGAGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCCA
386 GTGGATCGATAGGGTG-GTAG-GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CCA
* * * *
2184664 TTTTTATGACTTTTAAATTCACTACAATGG-CCCATAAGCCTTCACAATGAAGTTT-ATGGCAAG
448 TTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAG
* * * * *
2184727 ACGACTC-CTTTCTATATTTCATGATTTCTTAAAAC-TTTT-GGGTTCGGGAATTTTTAAAATTT
511 ACGACTCGTTTTCTATTTTTCATGATTT-TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
2184789 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACA
575 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACA
* * *
2184854 AAAAAGTTCAACCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
640 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
2184919 TTCAGACACTTTAAT-GCTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTTAA--GGGT
705 TTCAGACACTTTAATAGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGT
* * *
2184981 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCATGTACCAGCACCCATCG
768 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
2185046 CACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCG-CTGGAA-CCCAATGCCACCGGTCCAG
833 CACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGT-CAG
2185108 GTTC-CC--G
895 GTTCTCCTGG
* * * *
2185115 CGATGCTCCGACGATGGTTGCCTCGGCGAAGAAAAATACCCGCACCAGCACATGCCCGGAGCCCA
1 CGATGCTCCGACGATGG-TGCCCCGACGAAGAAAAAT-GCGGCACCAGCACATGCCC-GAGCCCA
* * * *
2185180 GTATGTGCATGCCG-AACCTATTCTCGATCTGCTCCGATC-TAGA-TGGGAATGAACTCCATATG
63 GCATGTGC-TGCCGAAACC----CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
2185242 CTTAGAATGGGAATGAACTCCGTATCCCTAAGTCAACCCATAAAACGAGCATGCGGGCACTCAGC
123 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
2185307 CAGCCAGAGGGGTGGGATGCGCAAG
188 CGGCCAGAGGGGCGGGATGCGCAAG
2185332 TTGGAAATTG
Statistics
Matches: 7263, Mismatches: 882, Indels: 391
0.85 0.10 0.05
Matches are distributed among these distances:
892 66 0.01
893 264 0.04
894 377 0.05
895 1434 0.20
896 168 0.02
897 334 0.05
898 192 0.03
899 310 0.04
900 167 0.02
901 92 0.01
902 609 0.08
903 553 0.08
904 534 0.07
905 349 0.05
906 696 0.10
907 217 0.03
908 40 0.01
909 35 0.00
910 31 0.00
911 37 0.01
912 15 0.00
913 21 0.00
915 30 0.00
916 19 0.00
917 3 0.00
918 185 0.03
919 99 0.01
920 1 0.00
921 23 0.00
922 21 0.00
923 2 0.00
924 5 0.00
925 30 0.00
926 25 0.00
927 29 0.00
928 9 0.00
929 6 0.00
930 51 0.01
931 178 0.02
932 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGAAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
AACCCTCAGTCCGGTCTGATCTTAGACTGAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTGG
Found at i:2180283 original size:25 final size:26
Alignment explanation
Indices: 2180228--2180284 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
2180218 ATTTTTCACA
* *
2180228 ATTTTTGAAACTTTTTACGGTTTGGG
1 ATTTTTGAAAATTTTTACGGTATGGG
*
2180254 ATTTTTGAAAATTTTTTCGG-AT-GG
1 ATTTTTGAAAATTTTTACGGTATGGG
2180278 ATTTTTG
1 ATTTTTG
2180285 GCCCCGAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 9 0.32
25 1 0.04
26 18 0.64
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (26 bp):
ATTTTTGAAAATTTTTACGGTATGGG
Found at i:2180714 original size:26 final size:26
Alignment explanation
Indices: 2180685--2180737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2180675 CCGATCTGAT
2180685 CTTAGACTGAGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
2180711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
2180737 C
1 C
2180738 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:2182539 original size:26 final size:26
Alignment explanation
Indices: 2182510--2182562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2182500 CCGATCCGAT
2182510 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2182536 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2182562 C
1 C
2182563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2183449 original size:26 final size:26
Alignment explanation
Indices: 2183413--2183465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2183403 CCGGTCCGAT
2183413 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2183439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2183465 C
1 C
2183466 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2185626 original size:312 final size:312
Alignment explanation
Indices: 2185040--2185639 Score: 775
Period size: 312 Copynumber: 1.9 Consensus size: 312
2185030 GTACCAGCAC
* *
2185040 CCATCGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGCTGGAACCCAATGCCACCGGTC
1 CCATCACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGCTGGAACCCAATGCCACCGGTC
* * *
2185105 CAGGTTCCCGCGATGCTCCGACGATGGTTGCCTCGGCGAAGAAAAATACCCGCACCAGCACATGC
66 CAGGTTCCCGCGATGCTCCAACGATGGTTGCCCCGACGAAGAAAAATACCCGCACCAGCACATGC
* *
2185170 CCGGAGCCCAGTATGTGCATGCCGAACCTATTCTCGATCTGCTCCGATCTAGATGGGAATGAACT
131 CCGGAGCCCAGCATGTGCATGCCGAACC---TCTCGATCCGCTCCGATCTAGATGGGAATGAACT
* *
2185235 CCATATGCTTAGAATGGGAATGAACTCCGTATCCCTAAGTCAACCCATAAAACGAGCATGCGGGC
193 CCACATGCTTAGAATAGGAATGAACTCCGTATCCCTAAGTCAACCCATAAAACGAGCATGCGGGC
* *
2185300 ACTCAGCCAGCCAGAGGGGTGGGATGCGCAAGTTGGAAATTGGCCGGGTCCCCTT
258 ACTCAACCAGCCAGAGGGGCGGGATGCGCAAGTTGGAAATTGGCCGGGTCCCCTT
* ***
2185355 CCATCACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCG-TCGGAACCCTAATGTCGTTGG
1 CCATCACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGCT-GGAACCC-AATGCCACCGG
* *** *
2185419 T-CAGGTTCTCCGACGATGCTCCAACGATGG-TGCCCCGATGAAGAAAAAT-GTGGCACCAGCGC
64 TCCAGGTTC-CCG-CGATGCTCCAACGATGGTTGCCCCGACGAAGAAAAATACCCGCACCAGCAC
*
2185481 ATGCCCGG-GCCCAGCATGTGC-TGCCGTAACC-CTC-AGTCCGGTCCGATCTTAGACTGGGAAT
127 ATGCCCGGAGCCCAGCATGTGCATGCCG-AACCTCTCGA-TCCGCTCCGATC-TAGA-TGGGAAT
* * ** * * *
2185542 GAACTCCACATGCTTAGACTAGGAATGAATTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
188 GAACTCCACATGCTTAGAATAGGAATGAACTCCGTATCCCTAAGTCAACCCATAAAACGAGCATG
* *
2185607 CGGGCGCTCAACTAGCCAGAGGGGCGGGATGCG
253 CGGGCACTCAACCAGCCAGAGGGGCGGGATGCG
2185640 TAAGCCGGGG
Statistics
Matches: 247, Mismatches: 30, Indels: 19
0.83 0.10 0.06
Matches are distributed among these distances:
309 1 0.00
310 13 0.05
311 4 0.02
312 92 0.37
313 5 0.02
314 17 0.07
315 72 0.29
316 27 0.11
317 16 0.06
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (312 bp):
CCATCACACATCATGTGCGCACACCCCCTAGCCCCCCCGATCGCTGGAACCCAATGCCACCGGTC
CAGGTTCCCGCGATGCTCCAACGATGGTTGCCCCGACGAAGAAAAATACCCGCACCAGCACATGC
CCGGAGCCCAGCATGTGCATGCCGAACCTCTCGATCCGCTCCGATCTAGATGGGAATGAACTCCA
CATGCTTAGAATAGGAATGAACTCCGTATCCCTAAGTCAACCCATAAAACGAGCATGCGGGCACT
CAACCAGCCAGAGGGGCGGGATGCGCAAGTTGGAAATTGGCCGGGTCCCCTT
Found at i:2186469 original size:26 final size:26
Alignment explanation
Indices: 2186433--2186485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2186423 TCGATCGGAT
2186433 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
2186459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
2186485 C
1 C
2186486 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:2187134 original size:905 final size:903
Alignment explanation
Indices: 2185355--2188459 Score: 4331
Period size: 903 Copynumber: 3.4 Consensus size: 903
2185345 GGGTCCCCTT
* *
2185355 CCATCACACATCATGTGCGCACA-CCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTTGG
1 CCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
* * *
2185419 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCGCATG
66 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* *
2185484 CCCGGGCCCAGCATGTGCTGCCGTAACCCTCAGTCCGG-TCCGATCTTAGACTGGGAATGAACTC
131 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGATCTTAGACTGGGAATGAACTC
* * **
2185548 CACATGCTTAGACTAGGAATGAATTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
196 CACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
* * * *
2185613 CTCAACTAGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
261 CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGT-CCCCTCTGCGTGCTGC
* * * *
2185678 CAATCCTACTACTGCAACCCTCAGTCTGATCTAATCTTAGATTGGGAATGAACTCCATATACCTA
325 CGATCCTACTACTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * *
2185743 ACCCAACCGACGAAATAAGCAGGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGAGACGGGAT
390 AGCCAACCGACGAAATAAGCAGGCGGGC-GGCGGGCGGGCACTACGACGGCCAGAGAGACAGGAT
* * *
2185808 ACGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCA
454 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* ** *
2185873 ATGCCATTTTCATGGCTTACAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGG
519 ATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
2185938 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAA
584 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA
*
2186003 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACACGATCCTTG-AATTTTTCTTGGCATG
649 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTTCTTGGCATG
*
2186067 CACAAAAACATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCC
714 CACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
2186132 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGG
778 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
2186197 GTGTGACTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
843 GTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
*
2186258 CCATCGCACATCATGTGCGCACACCCCCCCTAGCCCCTCCGATCGTCGGAACCCTAATGTCGTCG
1 CCATCGCACATCATGTGCGCACA-CCCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTCG
* * * *
2186323 GTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCTGCACAT
65 GTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
2186388 GCCCGGGCCCAGCATGTGCTGCTGCAACCCTCAGTTC-GATCGGATCTTAGACTGGGAATGAACT
130 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGATCTTAGACTGGGAATGAACT
*
2186452 CCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
195 CCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
** * * *
2186517 GCTCAGCCAGCCAGAGGGGTAGGATGC-CAAGCCGAGGCTCGGTTAGGTCCCTCTCTGCGTGCTG
260 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCC-CTCTGCGTGCTG
* * * * * *
2186581 CCGATCCTACTGCTGCAACCCTTAATCTGGTCTGATCTTAGACTGGTAATGAACTCCATGTGCCT
324 CCGATCCTACTACTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCT
* * * * *
2186646 AAGCCAACCGACGAAATAAGCAGACGGACGGACGGGCGGGCACTATGCCGGCCAGAGAGACCGGA
389 AAGCCAACCGACGAAATAAGCAGGCGGGCGG-CGGGCGGGCACTACGACGGCCAGAGAGACAGGA
* * * *
2186711 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACCTGCC
453 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
2186776 AATGCCATTTTAATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
518 AATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** ** *
2186841 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACCTTTTGAGATTTTTTAAA
583 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* * * * *
2186906 ATTTTTTC-GAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGTA
648 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTTCTTGGCA
*
2186970 TGCACAGAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
712 TGCACA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
2187035 CCCCATTTCAGACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
776 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * **
2187100 GGGTATGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGAGCCAAGTAGTAGCAC
841 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* ** * * *
2187163 CCATCGCACATCATGTGCGCACACCCCCCGA-CCCCCCCGATCACCGGAACCTTAATGTCGCCGA
1 CCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
* ** *
2187227 TCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCC-ATCGAAGAAAAATACGGCACCAGCACAT
66 TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACAT
* * * * *
2187291 GCTCAAGCCCAGCATGTGCTGTCGTAACCCTC-GAT-CTGATCCGATCTTAGACTGGGAATGAAC
130 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCCGGATCCGATCTTAGACTGGGAATGAAC
** * *
2187354 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGG
194 TCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
* * * ** *
2187419 CGCTCAGTCGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTTGGGTACCCCTCTGCATGCT
259 CGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGT-CCCCTCTGCGTGCT
* * * * *
2187484 GCTGATCCTACTACTGCAA-CCTATAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGC
323 GCCGATCCTACTACTGCAACCCT-CAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGC
** * *
2187548 CTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGCGAGGCACTACGACGGTCAGAGAGACA
387 CTAAGCCAACCGACGAAATAAGCAGGCGGGC-GGCGGGCG-GGCACTACGACGGCCAGAGAGACA
* * * *
2187613 GGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGTACATCTTCACATTTCTGCAT
450 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
2187678 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTC
515 GCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
2187743 ATGGCAAGACGACTCGTTTTCTATTTTTGACGATTTTTGAAAC-TTTTACGGTTTGGGATTTTTC
580 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTT-
* * * * * * *
2187807 T-AAATTTTTTCAGAAGGGGATTTGGCCCCAAACTCGGTAGACATGGTCCCTGT-CTTTTTGTTG
644 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTTCTTG
* * ** * *
2187870 GCATGCAAAAAAAAATTCATCTTCAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAC
709 GCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
2187935 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGA
773 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
2188000 AGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCA
838 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
2188065 C
903 C
* * * *
2188066 CCATCGTACAT-ATGTGCGCACACCCCACC-GGCCCCCCCGATCGTCGGATCCCCAATGTCGTCG
1 CCATCGCACATCATGTGCGCACACCCC-CCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTCG
** *
2188129 GTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACAT
65 GTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
2188194 GCCCGAGCCCAGCATGTACTGCCGCAACCTTCAATCCGG-TTCGATCTTAAACTGGGAATGACCT
130 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGATCTTAGACTGGGAATGAACT
* * *
2188258 CCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
195 CCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
* * * * *
2188323 GCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTCCCCTTCTACGTGCTG
260 GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCC-TCTGCGTGCTG
* * * * * * * * *
2188388 TCGATCCTGCTGCCGTAACCCTCGGTCTGGT-TCGATCTTAGACCGGGAATGAACTCCGTATGCC
324 CCGATCCTACTACTGCAACCCTCAGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCATATGCC
2188452 TAAGCCAA
388 TAAGCCAA
2188460 ACTTGGTAGA
Statistics
Matches: 1947, Mismatches: 227, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
902 23 0.01
903 742 0.38
904 545 0.28
905 632 0.32
906 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
CCATCGCACATCATGTGCGCACACCCCCCTAGCCCCCCCGATCGTCGGAACCCTAATGTCGTCGG
TCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGATCCGATCTTAGACTGGGAATGAACTC
CACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCTCTGCGTGCTGCC
GATCCTACTACTGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAA
GCCAACCGACGAAATAAGCAGGCGGGCGGCGGGCGGGCACTACGACGGCCAGAGAGACAGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATT
TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAATTTTTCTTGGCATGCA
CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
Found at i:2187365 original size:26 final size:26
Alignment explanation
Indices: 2187336--2187388 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2187326 CTGATCCGAT
2187336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2187362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2187388 C
1 C
2187389 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2189064 original size:613 final size:615
Alignment explanation
Indices: 2187834--2189072 Score: 1683
Period size: 613 Copynumber: 2.0 Consensus size: 615
2187824 GGATTTGGCC
* * * **
2187834 CCAAACTCGGTAGACATGGTCCCTGTCTTTTTGTTGGCATGCAAAAAAAAATTCATCTTCAAACT
1 CCAAACTCGGTAGACATGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACT
* *
2187899 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTA
66 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACAGTCCCCATTTCAAACACTTTAATGGCTA
*
2187964 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGAAGA
* * * *
2188029 GGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGTACATATGTGCGCACACCCCAC
196 GGGATAAGGAGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATATGTACGCACACCCCAC
* *
2188094 CGGCCCCCCCGATCGTCGGATCCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCAACGATG
261 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-ACGA-GCT----CGATG
* * ** *
2188159 GTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCT
320 GTACCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCC
*
2188224 TCAATCCGGTTCGATCTTAAACTGGGAATGACCTCCATATGCTTAGATTGGGAATGAACTCCGTA
385 TCAATCCGGTTCGATCTTAAACTGGGAATGACCTCCATA-GCTTAGACTGGGAATGAACTCCGTA
* * *
2188289 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAA
449 TGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAA
* * * * * *
2188354 GCTGGGGATCGGCCAGGTCCCCTTCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGT
514 GCTAGGGATCAGCCAGGTCACCTTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGT
* *
2188419 TCGATCTTAGACCGGGAATGAACTCCGTATGCCTAAG
579 TCAATCTTAGACCAGGAATGAACTCCGTATGCCTAAG
* * * * *
2188456 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACT
1 CCAAACTCGGTAGACATGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACT
* * *
2188521 CGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTA
66 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACAGTCCCCATTTCAAACACTTTAATGGCTA
* * *
2188586 CTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGAAGA
* *
2188651 GGGATAAGGAGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTACGCACACCCTC
196 GGGATAAGGAGCCAATATAAGGACCAAGTACCAGCACCCATCGCACAT-ATGTACGCACACCC-C
* * *
2188716 CCCGAG-CCCCCCGATCGTCGGAACCCTAATGCCGTTGGTCAGGTTCT-C-CG-G-T-GATGGTA
259 ACCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACGAGCTCGATGGTA
* * ** *
2188775 CCCCGATGAAGAAAAATGCGACACCAGTACATGCCCGAGCCTAGCATGTGTTGCCGCAACCCTCG
323 CCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCA
* * * *
2188840 GTCCGGTTCGATCTTAGACTGGGAATGAACTTCGCATA-CTTAGACTGGGAATGAACTCTGTATG
388 ATCCGGTTCGATCTTAAACTGGGAATG-ACCTC-CATAGCTTAGACTGGGAATGAACTCCGTATG
* *
2188904 CCTAAGTCAACCCATGAAATGAGCCTGCAGGG-GCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
451 CCTAAGTCAACCCACGAAACGAGCCTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAG
**
2188968 -TCAGGGAT-AGCTTGGGTCTACC-TCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCG
515 CT-AGGGATCAGC-CAGGTC-ACCTTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCG
* *
2189030 G-TCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAG
577 GTTC-AATCTTAGACCAGGAATGAACTCCGTATGCCTAAG
2189069 CCAA
1 CCAA
2189073 CCGACGAAAA
Statistics
Matches: 545, Mismatches: 62, Indels: 29
0.86 0.10 0.05
Matches are distributed among these distances:
612 5 0.01
613 248 0.46
614 9 0.02
615 4 0.01
618 1 0.00
619 1 0.00
621 2 0.00
622 219 0.40
623 14 0.03
624 41 0.08
625 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (615 bp):
CCAAACTCGGTAGACATGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACT
CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACAGTCCCCATTTCAAACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCCAGGTTTGAAGA
GGGATAAGGAGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATATGTACGCACACCCCAC
CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCACGAGCTCGATGGTACCC
CGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCCTCAATC
CGGTTCGATCTTAAACTGGGAATGACCTCCATAGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCCTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTAGGG
ATCAGCCAGGTCACCTTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTTCAATCT
TAGACCAGGAATGAACTCCGTATGCCTAAG
Found at i:2189777 original size:26 final size:26
Alignment explanation
Indices: 2189739--2189790 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2189729 TGGTCTGATA
*
2189739 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
2189765 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
2189791 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:2190267 original size:888 final size:885
Alignment explanation
Indices: 2188456--2190665 Score: 2914
Period size: 886 Copynumber: 2.5 Consensus size: 885
2188446 TATGCCTAAG
* *
2188456 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACT
* * * *
2188521 CGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTA
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
* *
2188586 CTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
2188651 GGGATAAGGAGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTACGCACACCCTC
196 GGGATAGGGGGCCAATAT-------AAG-----GG-CCCATCGCACTTCATGT--GCACACAC-C
* * *
2188716 CCCGAG-CCCCCCGATCGTCGGAACCCTAATGCCGTTGGTCAGGTTC-TC--CG--G-T----GA
245 CCC-AGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGCGA
* * * *
2188770 TGGT-ACCCCGATGAAGAAAAATGCGACACCAGTACATGCCCGAGCCTAGCATGTGTTGCCGCAA
309 TGGTGA-CCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAA
* * * * *
2188834 CCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTTCGCATACTTAGACTGGGAATGAACTC
373 CCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTC
* * *
2188898 TGTATGCCTAAGTCAACCCATGAAATGAGCCTGCAGGGGCTCAGCCGGCCAGAGGGGCGGGATGC
437 CGTATGCCTAAGTCAACCCATGAAACGAGCCTGCAGGGGCTCAGCCGGCCAGAGAGGCGGGATGC
* * * * * *
2188963 ACAAGTCAGGGATAGCTTGGGTCTACCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC
502 ACAAGCCAGGGATAGCTCGGATCCACCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTC
*
2189028 CGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCG
567 CGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCG
*
2189093 GGCGGGCGGGTACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAG
632 GGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAG
** *
2189158 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
697 GTGGGTTTAGGCACATCTTCATATTTCAACATACCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
2189223 CAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATTGCAAGACGGCTCGTTTTCTATTTTTCATGA
762 CAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* * *
2189288 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTGGAAAGAGTTTTGGCC
827 CTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCC
** *
2189347 CCAAACTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT-AAGCTAAAAAG
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAA-CTAAAAAC
*
2189411 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACGCTTTAATGGCT
65 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCT
* *
2189476 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATT
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
2189541 AGGGATAGGGGGCCAATATAAGGGCCCATCGCACTTCATGTGCACACACCCCCAGCCCCCCCGAT
195 AGGGATAGGGGGCCAATATAAGGGCCCATCGCACTTCATGTGCACACACCCCCAGCCCCCCCGAT
* *
2189606 CGTCGAAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGCTCCGACGACGGTGACCCGATGAA
260 CGTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCG-CGATGGTGACCCGATGAA
* * *
2189671 GAAAAATACGACACCAGCAAATGCCTGAGCCTAGCATGTGCTGCCACAACCCTCGATCTGGTCTG
324 GAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCTGGTCTG
*
2189736 ATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAAC
389 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAAC
* ** *
2189801 CCATGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGTAAGCCAGGGATCGG
454 CCATGAAACGAGCCTGCAGGG-GCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCAGGGAT-AG
* * * * * * * *
2189865 C-CGGATCCCCCTCTGCGTGCTGTTGATCTTGCTGCCATAACCCTCAGTCTGGTCTGATCTTAGA
517 CTCGGATCCACCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTAATCTTAGA
* * * * *
2189929 CTGGGAATGAATTCCGTATGCCTAAGCCGACCGATG-AAACGAGCGGGCGGGTAGGGGGCGGGCA
582 CTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGC-GG--GCGGGCGGGCA
* * *
2189993 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
644 CTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGC
* * * *
2190058 ACATCTTCATATTTCAACGTACCAATGCCATTTTTGTGGCTTTTAAATTCATACAATGGTCCCTT
709 ACATCTTCATATTTCAACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCT
* * * *
2190123 AAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGACTTTTGAAAGTT
774 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTAAAACTT
* *
2190188 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCA-TTTTTG-C
839 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAG-AGTTTTGGCC
* * *
2190234 CCAAACTTGGTAGACGTGATGCTTATAATTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACT
* *
2190299 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-TCCCATTTTAGACACTTCGAA-GGC
66 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCT-CCATTTCAGACACTT-TAATGGC
*
2190362 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
129 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
2190427 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC
194 GAGGGATAGGGGGCCAATATAAGGGCCCA-T--C-GCA--C--T-----TCATGTGCACACACCC
* * * * *
2190492 CCCGACCCCTCCGATCGCCGAAACCCCAATGCCGTCGGTCTGGTTCTCCGACGATGCTCCGGCGA
246 CCAG-CCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCC-GCGA
* ** * *
2190557 TGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAC
309 TGGTGACCCGATGAAGAAAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAAC
**
2190622 CCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
374 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
2190666 CTAAGCCAAC
Statistics
Matches: 1161, Mismatches: 119, Indels: 68
0.86 0.09 0.05
Matches are distributed among these distances:
874 2 0.00
875 40 0.03
876 9 0.01
878 18 0.02
879 2 0.00
880 1 0.00
881 1 0.00
884 3 0.00
885 15 0.01
886 263 0.23
887 206 0.18
888 229 0.20
889 1 0.00
890 3 0.00
891 197 0.17
893 1 0.00
895 1 0.00
900 18 0.02
901 150 0.13
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCCATCGCACTTCATGTGCACACACCCCCAGCCCCCCCGATC
GTCGAAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGCGATGGTGACCCGATGAAGA
AAAATACGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCCTGCAGGGGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCAGGGATAGCTCG
GATCCACCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTAATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCGGGCGGGCGGGCACTACGTC
GGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTT
CATATTTCAACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGACTTTTAAAACTTTTTACGG
TTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCC
Found at i:2193170 original size:26 final size:26
Alignment explanation
Indices: 2193132--2193184 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2193122 TTGGTCCGAT
*
2193132 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
2193158 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
2193184 C
1 C
2193185 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:2194080 original size:26 final size:26
Alignment explanation
Indices: 2194044--2194099 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2194034 CCTGTCCGAT
2194044 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* **
2194070 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCATATG
2194096 CTTA
1 CTTA
2194100 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:2194963 original size:911 final size:900
Alignment explanation
Indices: 2190610--2195769 Score: 6263
Period size: 911 Copynumber: 5.7 Consensus size: 900
2190600 GCCCAGCATG
* * *
2190610 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTC-ATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
2190675 CCGACGAAA--A----G-A-GCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
2190732 GCCGTGGATCGATAGAGTGGTAGGAGGGTTTAGGCACATCTTCATATTACTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
2190797 TTTTTATGGCTTGTAAATTCATACAATGGT-CCTTGAAGCCTTCACGTGATGTTTCATGGCAAGA
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
2190861 CGACTCGTTTT-T-TTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
2190924 TTGGAA-GATGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAA
324 TCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
2190988 AAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTCGAAAAAGGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
2191053 CCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGCGGTATG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
2191118 AGTTCTTGAGGTTTGATGAGGGATAAGGGCCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
2191183 ATCATGTGTG--CACCCCCCGCCCCCCCGATCGCCGAAACTCCAATGCCGTCAGTCAGGTTCTCC
583 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
* * *
2191246 GACGATTCTCCTG-CGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
648 GGCGATGCTCC-GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
2191310 GCATGTGCTGCCGCAACCCTCGGTCCGGT-TCGATCTCAGACTGGGAATGAACTCCATATGCTTA
712 GCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * *
2191374 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGTTCAGCCGGC
776 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
2191439 CAGAGGGGTGGGATGTGCAAGCCGGGGATTGACTGGGT-CCCTCTCTGCGTGTTGTCGATCC
841 CAGAGGGGCGGGATGCGCAAGCCGGGGATGGAC-GGGTCCCCT-TCTGCGTGCTGCCGATCC
* * * *
2191500 TACTGCCACAACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAA
1 TGCTGCCGCAACCCTCA-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
2191565 TCGACGAAACGA----GCAGGCGGGCGGGTGGGCACTACGTCGGCTAGAGAGACGGCATGCACAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * ** *
2191626 GCC-TGGATCGATAGAGTGGTAGG-GGGTTTAGGCACATATTCATATCTCTGTGTGCCAATGCGA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
2191689 TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
2191754 GACTCATTTTCTATTTCTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
2191819 TGGAAGGATTTTTGGTCCCAAACTTGGTGGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
2191883 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTATCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
2191948 AGACAGTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2192013 TTTTTGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
2192078 CATGTGCGCACA-----C--CCCCCTGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTT---
585 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGG
* *
2192133 ---TG----G-TGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
650 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
2192190 TGTGCTGCCGCAACCCTCTGTCCGGTTTGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACT
715 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
* ** * * *
2192255 GGGAATGAACTCTGTAAGCCTAAGTCAACCCGTGAAACGAGTGTGCGGGCGCTCAGCTGACCAGA
780 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * **
2192320 GGGGCGGGATGCGCAAGACGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCCGATCC
845 GGGGCGGGATGCGCAAGCCGGGGAT-GGACGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * ** *
2192377 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCG-ATGCCTAAGCCAA
1 TGCTGCCGCAACCCTC-ATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2192441 CCGACGAAATGA--GTG--GGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATACGCAA
65 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
2192502 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCTGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
2192567 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** *
2192632 GACCCATTTTCTGTTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
2192697 CGGAAGGAGTTTTCGCCCTAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCATAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
2192762 AACTTCAGCAAAAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAGGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
2192827 AGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGTG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2192892 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
2192957 CATGTGTGCACACACCCCCCTGGCCCCCCAATCGCTGGAACCCCAATGTCGTCGGTCAGGATTTC
585 CA--TGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG--TT-
* * * *
2193022 CGATGATGCTCCAGCGATGCT-CTAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
644 C-----T--T-CGGCGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * * * *
2193086 TGCCTGACCCCAGGATGTGCAGCC-CTAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATGAAC
700 TGCCCGAGCCCAGCATGTGCTGCCGC-AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
2193150 TTCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAACGAGCGTGGGGG
764 TCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
2193215 CGCTCAGCCGGCCAGTGGGGCGGGATGTGCAAACCGGGGATCGACTGGGTCCCCCTCAGCGTGCT
829 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATGGAC-GGGTCCCCTTCTGCGTGCT
2193280 GCCGATCC
893 GCCGATCC
* * ** * *
2193288 TGCTACCACAACCCTCATTCCAATCCCATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCA-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
2193353 CTGACAAAATGAGCAGGCGGGCGAACGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGG
65 CCGACGAAA--CG-A-GCGGGC--A--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * * *
2193418 AGGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
122 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
2193483 CAATACCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCAT
187 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** * ** *
2193548 GGCAAGACGACTCGTTTTCCATTTTTCGTGATTTTTGAATCTTTTTGTGGTTTGGGATTTTTTAA
252 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* * * *
2193613 AATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACATGATGCTTGTATTTTTGTCGGCAT
317 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
2193678 GCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGAGCATTTGAAAAAAGTGT
382 GC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
2193743 CGCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
446 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
2193808 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
511 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
2193873 ATCGCACATCATGTGCGCGCACCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCA
576 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * *
2193938 GGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
640 GGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
2194003 GAGCCCAGAATGTGCTACTGCAACCCTCGGTCCT-GTCCGATCTTAGACTGGGAACGAACTCCAT
705 GAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCAT
* *
2194067 ATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTC
769 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
2194132 AGCCGGGCAGAGGGGCGGGATGCGCAAGCCGAGGATAGGTCGGGTCCCCTTTTGCATGCTGCCGA
834 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-GGACGGGTCCCCTTCTGCGTGCTGCCGA
2194197 TCC
898 TCC
* * * * * *
2194200 TGCTGTCGCAACCCTCGATTTGGTCGAATCTTAGA-TAGGGAAGGAACTCCATATGCCTAAGCCA
1 TGCTGCCGCAACCCTC-ATCTGATCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCA
* *
2194264 ACCGACGAAACGAGCGGGCAGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCCGG
64 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG-C-G
*
2194329 CAAGCCGTGGATCGATACGGGGTGGGTAGGTGGGTTTAGGCAGATCTTCATATTTGCTGCATGCC
127 CAAGCCGTGGATCGATA--GGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGCATGCC
* * *
2194394 -ATGCCATTTTTATGGCTTGTCAATTCATACAATGTTCCCTTAAGGCCTTCACAGGTGAAATTTC
188 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCAC--GTGAAGTTTC
* * * * * * *
2194458 AAGGCAAGACAACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAGAATTTTTT
250 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
2194523 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATAG-GATCCTTTTATTTTTGTTGG
315 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGG
* * * *
2194587 CATCCACAAAAAAATTCAGC-AAAATTCTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAA
379 CATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
2194651 TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTA
443 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
2194716 AGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCA
508 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
2194781 CCCATCGCACATCATGTGTGCACACCCCCCCAGCCCCCCGATCGCCTGAACCCCAATGCCGCCAG
573 CCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGG
* * ** *
2194846 TCAGGTTCTTCGGCGATGCTCCGACGATGGTACCCCGGGGAAGAAAAATATGACACCAGCACATG
637 TCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG
* * *
2194911 CCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTGGTCTGATCGTAGACTGGGAATGAACTCC
702 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
* *
2194976 ATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGGTCAACCCACGAAACGAGCGTTCGGCGG
767 ATATGCTTAGACTGGGAATGAACTCTGTATGCCTAA-GTCAACCCACGAAACGAGCG-T--GCGG
* * * * *
2195041 TGCGCTCAGGCCCGGACCTAG-GGGGCGGAATGCACAAGCCGGGGATCGGGTCCGGTCCCCCTCT
828 -GCGCTCA-G-CCGG-CC-AGAGGGGCGGGATGCGCAAGCCGGGGAT--GGACGGGTCCCCTTCT
* *
2195105 ACGTGCTGCCCATACC
886 GCGTGCTGCCGAT-CC
* * * *
2195121 TGGCTGCACTGC-ACCGGCTCAGTTTGGTCAAATCTTAGACTGGGAA-GGACTGTCCGTATGGGC
1 T-GCTGC-C-GCAACC--CTCA-TCTGATCCAATCTTAGACTGGGAATGAAC--TCCGTAT--GC
* * *
2195184 CTAAGCC-ACCGACGAAACGAGGGCGGGCGGAGTGGGCGGGTGGGGAGCACTTACGGTTCGGCC-
56 CTAAGCCAACCGACGAAACGA--GCGGGCAG-GCGGGC-GG-GCGG-GCAC-TAC-G-TCGGCCA
* ** *
2195247 -AGAGACGGGATGCGGCAAGCCGTGTTATGCGATA-GGTGGTAGGTCAGTTTA-GAACATGCTTC
112 GAGAGACGGGATGC-GCAAGCCGTG-GAT-CGATAGGGTGGTAGGTGGGTTTAGGCACAT-CTTC
* * * * **
2195309 TTATTTTTGCAATGCCAATAGGCATTATTTATGGGTTGTAAATTCATACAATGGTGGCTTAAGCC
173 ATATTTCTGC-ATGCCAAT-GCCATT-TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* ** **
2195374 TTCACGTG-AGTTTCATGGCATAGAGCG-CTTGTTTTCCTATTTGGCACGATTTTTGAAAAATTT
235 TTCACGTGAAGTTTCATGGCA-AGA-CGACTCGTTTT-CTATTTTTCACGATTTTTGAAACTTTT
* * *
2195437 TGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGAT
297 TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
2195502 CCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGT
362 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
2195567 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAA
427 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * * *
2195632 TCTCAAATCCTCTTTCAGGGAGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAA
492 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * **
2195697 GCACCAAGTACCAGCACTCATCATACATCATGTGCGCACACCCCCCGGCCACCCCGATCGCCGGA
557 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGCCGGA
2195762 ACCCCAAT
621 ACCCCAAT
2195770 ACTGCCTTGA
Statistics
Matches: 3694, Mismatches: 443, Indels: 224
0.85 0.10 0.05
Matches are distributed among these distances:
876 67 0.02
877 266 0.07
878 203 0.05
879 194 0.05
881 9 0.00
882 1 0.00
886 1 0.00
888 34 0.01
889 30 0.01
890 68 0.02
891 2 0.00
892 103 0.03
893 225 0.06
894 133 0.04
895 4 0.00
897 1 0.00
899 1 0.00
904 36 0.01
905 1 0.00
906 20 0.01
908 10 0.00
909 70 0.02
910 24 0.01
911 610 0.17
912 440 0.12
913 8 0.00
914 1 0.00
915 6 0.00
916 7 0.00
917 1 0.00
918 6 0.00
919 23 0.01
920 26 0.01
921 5 0.00
922 6 0.00
923 50 0.01
924 273 0.07
925 214 0.06
926 7 0.00
927 13 0.00
928 9 0.00
929 7 0.00
930 23 0.01
931 51 0.01
932 314 0.09
933 33 0.01
934 47 0.01
935 6 0.00
936 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (900 bp):
TGCTGCCGCAACCCTCATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGC
GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
GGGCGGGATGCGCAAGCCGGGGATGGACGGGTCCCCTTCTGCGTGCTGCCGATCC
Found at i:2194993 original size:26 final size:26
Alignment explanation
Indices: 2194957--2195010 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
2194947 GGTCTGATCG
2194957 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
2194983 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
2195009 TA
1 TA
2195011 AGGTCAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Done.