Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 15 of 129
Found at i:2195890 original size:26 final size:26
Alignment explanation
Indices: 2195851--2195907 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
2195841 CCTGTCTGAT
2195851 CTTAAACTGAGAATGAACTCCATATG
1 CTTAAACTGAGAATGAACTCCATATG
* * *
2195877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGAGAATGAACTCCATATG
2195903 CTTAA
1 CTTAA
2195908 GTCAACCACG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAATGAACTCCATATG
Found at i:2198687 original size:26 final size:26
Alignment explanation
Indices: 2198651--2198701 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
2198641 GATCCGATTC
2198651 TAGACTAGGAAAGAACTAC-GTATGCT
1 TAGACTAGGAAAGAACT-CTGTATGCT
* *
2198677 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTAGGAAAGAACTCTGTATGC
2198702 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAAAGAACTCTGTATGCT
Found at i:2199208 original size:898 final size:898
Alignment explanation
Indices: 2197017--2205766 Score: 11002
Period size: 896 Copynumber: 9.8 Consensus size: 898
2197007 GTGTTGTTGT
* * * *
2197017 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
2197082 CGAGCGGGCGGACGGGCGAGCACTATGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
2197147 AGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
*
2197212 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
2197277 TTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGATTTTT
261 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTT
* * *
2197342 GG-CCCAAAATGTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAA
326 GGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
2197406 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
2197471 GGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
2197536 GATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
2197601 CCCCCTTCGGCCCCTCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCCCCGACGATGCTCC
585 CCCCC--CGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * ** * * *
2197666 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCTGAGTAGGTGCTGCT
647 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
2197731 GCAACCCTCGATCCGGTTCGATCCTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAA
712 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
2197796 CTCGGTATCCCTAAGTCAACCCATGAAATGAGCT-TACGGGCGCTCAGCTGGCCAGAGGGGAGAG
777 CTCTGTATGCCTAAGTCAACCCATGAAACGAG-TGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
2197860 ATGCACAAGCCGGGGATCGACCAGGTCCCCCTCTACGTGCTGTTGATCCTGCTACCGC
841 ATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * * *
2197918 AACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCAAACTGACGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** **
2197982 CGAGCGGGCGGGCGGGCGGGTTCTACACCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
2198046 AGGGTGATAGGTGGGTTTAGGCACATCTTAATATTTCTACATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* * * *
2198111 TAAATTCATACAATTGTCCCTTAAGCCTTCACGTGCAGTATCATGGCAAGATGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * ** * * *
2198176 TTTTTCATGATTTTTGAAACTTTTTACGATTCAAGATTTTTTAAAATTGTTTCGGAAGGA-GTTT
261 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTT
* * * * *
2198240 AGCCCCAAATTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTGAGCTAAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
2198305 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
391 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
2198370 GCAACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGGGGTTTG
456 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
2198435 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT-CTGCACA
521 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACA
* * *
2198499 CCCCCCGGCCCTCCCGATCGCCGGAACGCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA
585 CCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA
** * * * * * * * * *
2198564 CGATGGTGCCCCGGTGAAGAAAACTACGGCACCAACACATGCTCAAACCCAACATGTTCTGCTGC
649 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * * *
2198629 AACCCTTGGTCCGATCCGAT-TCTAGACTAGGAAAGAACTACGTATGCTTAGACTGGGAATGAAC
714 AACCCTCGGTCCGGTCCGATCT-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
2198693 TCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCAGGCACTCAGCCTGCCAGA-GGGCGGGAT
778 TCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
*
2198757 GCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGC
843 GCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* *
2198813 AACCCTCAATCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
*
2198878 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
2198943 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
*
2199008 TAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * ** *
2199073 TTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTT
261 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTT
*
2199138 GGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
326 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
2199203 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
391 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
2199268 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGCGTGAGTTCTCGAGGTTTG
456 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
2199333 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
521 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
2199398 CCCCTTCGGCCCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGGTTCCCCGACGATGCTCCG
586 CCCC--CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * *
2199463 ACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGTA-GCTGCTGCT
648 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG-TGCTGCC
* * * *
2199527 GCAACCCTCGATCCGGTCCGATCCTAGACTGGGAATGAACTACGTATGCTTAGACTAGGAATGAA
712 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
2199592 CTCGGTATCCCTAAGTCAACCCATGAAATGAGCT-TGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
777 CTCTGTATGCCTAAGTCAACCCATGAAACGAG-TGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
2199656 ATGCGCAAGCCGGGGATCGGCCAAGTCCCCCTTTGCGTGCTATCGATCCTACTGCCGT
841 ATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * * *
2199714 AACCCTTAATCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
2199779 CAAGCGGGCGGGCGGGCAGACGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTCGAT
66 CGAGCGGACGGGC-GG--G-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
2199844 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTGATATTTCTACGTGCCAATGCCATTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * *
2199909 CTTGTATATTCATACGATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
2199974 TCTATTTTTCATGATTTTCAAAACTTTTTGCGCTTTGGGATTTTTTAAAATTTTTTCGAAAGGAG
257 TCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-
* * *
2200039 TTTTTGG-CCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
321 TTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
2200103 CTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
2200168 TAATGG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTTGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
2200232 GTTTGATGAGAGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * *
2200297 CACACACCCCCTGGCCCCCTGATCGCCGGAACCCAAATTCCGTCGGGCAGGTTCTTCGACGATAC
581 CACAC-CCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * *
2200362 TTCGACGATGGTGCCCCGACGAAGAAATATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGCT
644 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
2200427 GCCACAACCCT---T---GT----TC-----C----AAT----T-TG-AT-CTTTGACTGGGAAT
709 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * * * *
2200466 GAACT-TCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGACTAGAGGGGT
774 GAACTCT-GTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
2200530 GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGAT-C--CTACCGA
838 GGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * * * * * * **
2200588 AAACCTCAATCCAGTTAGATCTTAGACTAGGAATGAACTCCGTATGCCTAAACGAATTGACGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
2200653 CGAGCGGGCGGGCAGGCGGGCGGGCGGGCACTACGTTGGCC-GAAAAGACTGCATGCG-TAGCCA
66 CGA----GC-GG-A--CGGGCGGGCGGGCACTACGTCGGCCAG-AGAGACGGGATGCGCAAGCCG
*
2200716 TGGATCGATAGGAGTGGCTAGGTGGGTTTAGGCACATCTTCATATTTCGTG-GTCCCAAT-CCAT
122 TGGATCGATAGG-GTGG-TAGGTGGGTTTAGGCACATCTTCATATTTC-TGCGTGCCAATGCCAT
* * *
2200779 TTTTATGGCTTGTACAA-TCATAGAATGGTCCGCTTAAGACTTCACGTG-AGTTTCAAGGC-AGT
184 TTTTATGGCTTGTA-AATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAG-
* * * * *
2200841 ACGGACCCGTTTT-TGTTTTTTATGATTCTC-AAAC-TTTTGCGGTTCAGGA-TTTTTAAAA-TT
246 AC-GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * *
2200901 TTTCGGAAGGATTTTTGGCCCCAAACTTGG-AGAC-T-ATCCTGGGA--TTTTTTGGC-TGC-CA
310 TTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
2200959 CAAAAAATTTAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
375 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
2201024 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGGTCTTTAAGGGGGTG
439 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
2201089 TGAGTTCTCAAGGTTTCATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
504 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *** *
2201154 ACAGC--GTGTGCACA-----C-ACCCCCCGATTATCGGAACCCCAATGCTGCCGGTCAGGTTCT
569 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
2201211 TCGACGATGCT-C--CGA--------C-A--AAGAAAAATACGGCACCAGCTCATGCCCGAGCCT
634 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * **
2201262 AGCATGTGCTGCCGTTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTATATGCTT
699 AGCATGTGCTGCCG-CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * ** *
2201327 AGACTAGGAATGAACT-TCATATGCCTAAGTCAACCCATGAAAGGAACGTGGGGGCGCTCAGCCG
763 AGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCG
* * * * * *
2201391 GCCAGAGGGGCGAGATGCGCAAGCCGGGGATCAGCC-GAGTCCCCCTATGCATGCTGCCGATCCC
827 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAG-GTCCCCCTCTGCGTGCTGTCGATCCT
*
2201455 ACTGCCGC
891 GCTGCCGC
* * * * ** *
2201463 AACCCTTAGTCTGGTTC-GATTTTAGACTGGGAATGTACTCTATATGCCTAAGCCAACCGATGAA
1 AACCCTCAGTCCGG-TCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * * * ** * ** *
2201527 ACGAGCAGG-CGAGCAAGCGGG--C--GGGCGGGCA-CTACACGGGATGCATAAGCCATGGATCG
65 ACGAGC-GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
2201586 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* *
2201651 TGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2201716 TATTTTTCACGATTTTCAAAAC-TTTTGCCGGTTCGAGATTTTTTAACATTTTTTTGAAAGGATT
259 TATTTTTCATGATTTTCGAAACTTTTTG-CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATT
** *
2201780 TTTGGCCCCAAACTTTTTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
323 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
2201845 CAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
2201910 ATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
2201975 TTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** *** * *
2202040 CACCCCCCGGCCCCCTCGATCATC-GAATCCCCAATGCTATCGGTCAGGTTCTCTGGCGATGCTC
583 CACCCCCCGGCCCCC-CGATCGCCGGAA-CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* **
2202104 C-AGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
646 CGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
2202168 CCGCAACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACTGGGAATG
710 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * *
2202233 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGTGGTGG
775 AACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * *
2202298 GATGCGCAAGCCGGAGATTGGCCGGGT-CCCC-CT---T--TG-C-A---TGCTGCCGT
840 GATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* *
2202345 AACCCTCAGTCTGGTTCA-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCAGTCCGG-TCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
2202409 ACAAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGTCGGAGTGACGGGATGCGCAAGCCGTGGA
65 ACGAGC----GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
2202474 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
126 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
2202539 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTT
191 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
2202604 TTCTATTTTTCACT-ATATTT-GAAACTTTTGGCGGTTTGGGATTTGTAAAAATTTTTTCGGAAG
256 TTCTATTTTTCA-TGAT-TTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* * * * *
2202667 GAGTTTTGGCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAGAATTC
319 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* * *
2202732 AGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACAC
384 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2202797 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTT
449 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
2202862 GAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACAGCATGT
513 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
2202927 GCGTACACCTCCCCTGGCCCCCCCGATCGCCGG------AA----------C-----C-CC-A--
578 GCGCACACC-CCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
*
2202967 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
640 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
2203032 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT-TGCTTAGACTGG
705 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * ** * *
2203096 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGTGCTCAGTCGGCCAGAGG
770 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * * * *
2203161 GGTGGGATGCACAAGTCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGTCAATCCCGCTGTCGC
835 GGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * * *
2203225 ATCCCTC-GATCCGGTTC-GATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAATCGACG-
1 AACCCTCAG-TCCGG-TCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
2203287 AA--A-C-GA---GCGGGTGGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCG
64 AACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** *
2203345 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTCCAATGCCATTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* ** *
2203410 TGTAAGTTCATACAATGGTCCCTTAAGCCTTCTTGTGAAGTTTCATGGCAAGATGACTCGTTTTC
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2203475 TATTTTTCATGATTTTTGATACTTTTTACGGCTT-GGGATTTTTTAAAA-TTTTTCGAAAAGAGT
259 TATTTTTCATGATTTTCGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTTCGAAAGGATT
* * *
2203538 TTTGGCCCCATACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATCCA-AAAAAAACTTCAGC
323 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TTCAGC
* * *
2203602 TAAAAAATCGAAGTGTACAAGATTTTGTGAGCATTTGCAAAAAGTGTCCCCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
2203667 AATGGCTACTGGTAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
2203732 TTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
2203797 ACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCAGGCAATGCTCC
582 ACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* *
2203862 GATGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
647 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*** ** * *
2203927 GCAACCCTCGGTCTACTTTGACCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAA
712 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** * *
2203992 CTCCT-CATGCCTAAGTCAACCCACAAAACGAGTTTGCGGGCGCTCAGCTGGCCAGAGGGGCGGG
777 CT-CTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
2204056 ATGCGCAAGCCGGGGAGCGGTCAGGTCCCCCTCTACGTGCTCTCGATCTTGCTGCTGC
841 ATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * ** * * *
2204114 AACCCTCGGTTCGGTTTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
2204179 CGAGCGGGCAAGCAGGCGGGCGGTCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAAGCCGT
66 CGAGC--G---G-A--CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
2204244 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
123 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * *
2204309 ACGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACAC
188 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
2204374 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGACTTTTTAAAATATTTTCGAAA
253 GTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
* * *
2204439 GGATTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTCTTGGCTTGCACAAAAAAATT
318 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
2204504 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACA
383 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2204569 CTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTC
448 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
2204634 -ATGGTATGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATG
513 GA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
2204698 TGTGCACACCCGCCCCCGACCCCCCGATCGCC-GAACCCCAATGCCGCCGGTCAGG-T-T----C
577 TGCGCACA--C-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * *
2204756 --T--T-CGACGATGCTGCCCC-ATGAAGAAAAATGCGGCACCAGCACGTGCCCGAGCCCAGCAT
639 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
2204815 GTGCTACCGCAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTG
704 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** * * ** * * *
2204880 GGAATGAACTCCATATGCCTAATTCTACCCACAAAACGATTGTGCTGGTGCTCAGCCGGCCAGAG
769 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAG
*** * * ** **
2204945 GGGCGGGATGCGCAAGCCGGGGATCAATC-GAGACCCCCTCTGCATGCTACCGATCCCACTGCCG
834 GGGCGGGATGCGCAAGCCGGGGATCGGCCAG-GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
2205009 C
898 C
* * * * *
2205010 AACCCTCGGTCCAGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGTCGAAA
1 AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
2205075 CTA---G-CGGGCGGACGGGCACTACGTCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
66 CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
2205136 AGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
2205201 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTAATGGCAAGACGACTCGTTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
2205266 TTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGGAAA-GAGTAT
261 TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGATTTT
* * * *
2205330 TGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGAACAAATAAATTTAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
2205394 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
2205459 GGCTACTGGTAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
2205524 GATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATCATGTGTGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
2205589 CCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGGTGCTCCG
585 CC-CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * *
2205654 ACGATGGTGCCCCGATGAACAAAAATACGACACCAGCACGTGCCCGAGCCCAGCATGTGCTGCTG
648 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
2205719 CAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGC
713 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
2205767 CTAAGTCAAC
Statistics
Matches: 6863, Mismatches: 756, Indels: 466
0.85 0.09 0.06
Matches are distributed among these distances:
845 41 0.01
846 6 0.00
847 1 0.00
848 1 0.00
849 1 0.00
852 2 0.00
856 5 0.00
858 1 0.00
859 42 0.01
860 1 0.00
861 64 0.01
862 68 0.01
863 46 0.01
864 9 0.00
865 16 0.00
866 131 0.02
867 178 0.03
868 380 0.06
869 236 0.03
870 3 0.00
871 23 0.00
872 300 0.04
873 16 0.00
874 92 0.01
875 66 0.01
876 16 0.00
877 132 0.02
878 89 0.01
879 69 0.01
880 70 0.01
881 45 0.01
882 85 0.01
883 257 0.04
884 243 0.04
885 9 0.00
886 10 0.00
887 2 0.00
888 112 0.02
889 164 0.02
890 9 0.00
891 339 0.05
892 106 0.02
893 12 0.00
894 153 0.02
895 214 0.03
896 561 0.08
897 203 0.03
898 498 0.07
899 193 0.03
900 305 0.04
901 142 0.02
902 3 0.00
903 107 0.02
904 127 0.02
905 557 0.08
906 253 0.04
907 8 0.00
908 23 0.00
909 18 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AACCCTCAGTCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
GTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
Found at i:2201336 original size:26 final size:26
Alignment explanation
Indices: 2201298--2201350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2201288 CCGGTCCAAT
*
2201298 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTAGGAATGAACTTC-ATATG
2201324 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTTCATATG
2201350 C
1 C
2201351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Found at i:2204896 original size:26 final size:26
Alignment explanation
Indices: 2204845--2204897 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2204835 CCGATCTGAT
* **
2204845 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2204871 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2204897 C
1 C
2204898 CTAATTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2207401 original size:159 final size:158
Alignment explanation
Indices: 2207099--2207448 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 158
2207089 ACTCCGTATG
* * * * *
2207099 CTTAGAATGGGAATGAACTTTGTATGCCTAAGTCAACCGACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAAC
** * *
2207164 CGGCCAGAGGGGCGGGATACGCAAGCTGGGGATCGGCCGGGTCCCCCACTGCGTGCTGCCGATCC
65 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCACTACGTGCTGCCGATCC
* * *
2207229 CGCTGTCGCAACCCTCGGTCTGGTCTAAT
130 CGCTGCCGCAACCCTCAGTCTGGTCCAAT
* * * *
2207258 CTTCGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAAC
* * * * * * *
2207323 CGGCCAGAGGGGCGGGATGCGTAAGCCAGGGATCGATCGTGTCCCCCTCTATGTGCTGTCGATCC
65 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCACTACGTGCTGCCGATCC
* * *
2207388 TGCTGCCGTAACCCTCAGTCTGGTCCGAT
130 CGCTGCCGCAACCCTCAGTCTGGTCCAAT
* **
2207417 CTTAGACTGGAAATGAACACCATATGCCTAAG
1 CTTAGACTGG-AATGAACTCTGTATGCCTAAG
2207449 CAAACCGATG
Statistics
Matches: 159, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
158 2 0.01
159 157 0.99
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAACC
GGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGACCGGGTCCCCCACTACGTGCTGCCGATCCC
GCTGCCGCAACCCTCAGTCTGGTCCAAT
Found at i:2208151 original size:26 final size:26
Alignment explanation
Indices: 2208122--2208174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2208112 CTGGTCCGAT
*
2208122 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2208148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2208174 C
1 C
2208175 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2209051 original size:26 final size:26
Alignment explanation
Indices: 2209013--2209065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2209003 CTGGTACGAT
*
2209013 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
2209039 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2209065 C
1 C
2209066 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2209182 original size:14 final size:16
Alignment explanation
Indices: 2209152--2209183 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
2209142 GGGTCCCCCT
2209152 CTGCGTACTGTCAATC
1 CTGCGTACTGTCAATC
2209168 CTGC-TACTG-CAATC
1 CTGCGTACTGTCAATC
2209182 CT
1 CT
2209184 CAGTCCGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 5 0.31
16 4 0.25
ACGTcount: A:0.19, C:0.34, G:0.16, T:0.31
Consensus pattern (16 bp):
CTGCGTACTGTCAATC
Found at i:2209657 original size:901 final size:900
Alignment explanation
Indices: 2207262--2216461 Score: 10867
Period size: 903 Copynumber: 10.4 Consensus size: 900
2207252 TCTAATCTTC
* * *
2207262 GACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * ** *
2207327 CAGAGGGGCGGGATGCGTAAGCCAGGGATCGATCGTGTCCCCCTCTATGTGCTGTCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
2207392 GCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGAAATGAACACCATATGCCTAAGCAAACCGA
131 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
2207457 TGAAACAAACGGCCGAGCGGGC-AGGG-GGGCAGTACGCCAGCCAGAGAGACGGGATGCGCAAGC
196 CG-AA-AGA--G-CGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
2207520 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCGATGCCATT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
2207585 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTCAAGTTTCATGGCGAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
2207650 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
386 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
2207715 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCTTGCACAAAACA
451 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
2207780 ATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
2207845 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
2207909 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCATATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * *
2207974 TGTGCGCGCACCCCCCGGCCCCCCCGATCACCGGAACCCCAAAGCCCCCGGTCAGG---T-----
711 TGTGCGCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
** * *
2208031 --T-CTCCGACGATGG-GCCCCGGTGAAGAAAAATGCCGCACCAGCACAAGCCCGAGCCCAGCAT
776 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
2208092 GTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
841 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * *
2208152 GACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAAA-AAACGTGCGGGCGCTCTGTCGG
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
2208216 CCAGAGGGGTGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGTTGCCGATCCTGT
65 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
2208281 TGCAGCAACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
130 TGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
2208345 GACG-AA-A-CGAGCGGGC--AGGCGGGCACTACGCAGGCCAGAGTGATGGAATGCGCAAGCCGT
194 GACGAAAGAGCGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
2208405 GGATCGATAGGGGTGGTAGGT-GGTTTAGGCACATCTTCATA-TTCTACATGCCAATGCCA-TTT
259 GGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
2208467 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * ** ** * *
2208532 CATTTTTTATTTTTCATGTTTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGAA
388 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
2208597 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* ** * *
2208662 TCAGCTTAAAACT-TTAGCGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
2208726 ACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
2208791 CGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
2208856 TGTGCACACCCCCCGG-CCCCCCAATCATAGGAACCCCAATGCCGCTGATCAGGTTCTCCGGCGA
713 TGCGCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGA
* * * *
2208920 TGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGT
778 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
2208985 GCTGCCACAACCCTCAGTCTGGTACGATCTTAGATTAGGAATGAACTCCGTATGCTTA
843 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
2209043 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGGTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** * * * *
2209108 CAGAGTGGTGGGATGCACAAGTTGGGGATGGGCCGGGTCCCCCTCTGCGTACTGTCAATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * *
2209173 ACTGCAATCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGA
131 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
2209238 TGAAACGAGCGAGCGGGCGGAAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CGAAA-GAGCGAGCGGGCGG--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
2209303 TGGATCGCTAGGGTGGTAGGTGGGTTTAAGCAAATCTTCAAATTTCTATGTGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * *
2209368 TATGGCTTGTAAATTCATACAATGGTCCCATAGGCCTTCACGTGAAGTTTCATGGCAAGACGATT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
2209433 CGTTTTCTATTTTTCACAACTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGA
388 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
2209498 AGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-AAAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
2209562 TTAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAATAACTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * *
2209627 ACTTTAAAGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTCTAAGGGCGTGTGGGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * ** *
2209692 TGAGGTTTAATGAGGGATAGATGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
2209757 TGTGCACACCCCCCGGCCCCCCCGATCGCCA-GAACCCTAATGCC-ATCGGTCAGG---T-----
713 TGCGCACACCCCCCGGCCCCCCCGATC-ATAGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGC
* * * * **
2209812 --T-CTCCGACGATGGTGCCCCGGCGAAGAAATATGTGGCACCAGCACATGCCTGAGTGCAGCAT
776 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
2209874 GTGCTGCCGCAA-CC-C--TC--G---G-TC-----C-----A-G---TCCG-AT-CTTA
841 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
2209908 GACTGGCAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *
2209973 CAGTA-GGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCCTGC
66 CAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * **
2210037 TGCCGTAACCCTTAGTCTGGTCCGATCTTAGA-TGGGGAAAGAACTCTATATGCCTAAGCCAACC
130 TGCCGCAACCCTCAGTCTGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** ***
2210101 GGCG-AA-A-CGAGCGGGC--GGGCAGGCACTACGTTGATGAGAGAGACGGGATGCGCAAGCCGT
194 GACGAAAGAGCGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
2210161 GGATCGATAGGGTGGTAGGTGGATTTAGGCACATATTCATATTTCTATGTGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
2210226 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
2210291 GTTTTCTATCTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA
389 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* *
2210356 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGTA-AAAAAAATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
2210420 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2210485 CTTTAATGGCTACTGGCAGTAAACCTGTAAGATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
2210550 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** * * * *
2210615 GTGCACACCCCTCAACCCCCCCGATCACCA-GAACCCCAATGCC-ATCGGTCAGGTTCTCCCGTG
714 GCGCACACCCCCCGGCCCCCCCGATCA-TAGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCG
** * * * * *
2210678 ATGCTCCGGTGATGGTTCCCCGATGAAGAAAAATACGACTCCAGCACATGCCCGAGCCCAGCATG
777 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
*
2210743 TGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA----T-
842 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * ** *
2210797 GACT---AAGTCAACT-C--A-G-----G----------AAATGAGCATCCGGGCATTCAGTCGG
1 GACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
2210840 CCAGAGGGGCGAGATGCGTAAGTCGAGGATCGGCC-GGTCCCCATCTGCATGCTGTCGATCCTGC
65 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * *
2210904 TGCCGCAACCCT-AGGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGTCTAAGCCAACC
130 TGCCGCAACCCTCA-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * *
2210968 GATGAAA-TG-G-GCGGGC--GGGTAGGCACTACGCCGGCTAGAGAGACGGGATGCGTAAGCCGT
194 GACGAAAGAGCGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*** *
2211028 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATACCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* *
2211093 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * * *
2211158 G-TTTCATATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCAGA
389 GTTTTC-TATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
2211222 TGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCACAAAAACAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
2211287 TCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
2211352 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
2211417 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
2211482 TGCACACACCCCCCCGGCCCCCCCGATCGCT-GGAAACCCAATGCCG-TCGGTCAGGTTCT-CGA
713 TGCGCACA-CCCCCCGGCCCCCCCGATC-ATAGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGG
* * *
2211544 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACA
775 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
2211609 TTTGCTGCCGTAA-CC-C--T-T-G---G---TT---C--GG--T----T-CG-AT-CTTA
840 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
2211644 GATTGGGAATGAACTCCATATGCCAAAGCCAACCCA-AGAAACGAGCGTGCGGGCACTCAGCCGG
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAACGAGCGTGCGGGCGCTCAGCCGG
* * * * **
2211708 CTAGAGGGGCAGGATGCGCAAGCCGTGGATTGGTTGGGT--CCC-C--C-T-CT---G--CCTGC
65 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * *
2211761 TGCCACAACCCTC-GATCCGATCC-ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
130 TGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
2211824 GAC-AAA-A-CGA----TC--GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCAT
194 GACGAAAGAGCGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
2211880 GGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--GCGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
*
2211943 ATGGCTTGTAAATTCATACAATGGT-CCTTCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
324 ATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
2212007 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCTGTTCGGGCTTTTTTAAAATTTTTTCGGA
388 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
2212072 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGAATGTA-AAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
2212136 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
2212201 ACTTTAATGGCTACTGGCAGCCAACCTGCAAAATCTCAAATGCTCTTCAGGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
2212266 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-TCAGCACCCATCGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** ** * *
2212330 TGCGCACACCCCCCCGTGCCCCCGATTGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTTCGGCG
713 TGCGCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCG
** *
2212394 ATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
777 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * ** * **
2212459 TGCAGCCACTACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTACACTTA
842 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * * *
2212518 GACTGGGAATGAACTTCGTATGCCTAAGCCAACCCTCGAAACGAACGTGCGAGTGCTTAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * * *
2212583 CAGAGGGGTGGGATGTGCAAGCCGGGGATCGATCGGCTCCCCTTCTGCGTGCTACCAATGCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * ** * * * *
2212648 GCTGCAACCCTCGGTTTGATCTGATCTTAGACTATGAATGAGCTCCATATGCCTTAGCCAATCGA
131 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * ** * * *
2212713 TGAAATGAGCGGGCTGGCAGGCGGGCGGGCACTACTTCAGCCAGAGAGATGGGATGCGTAAGCCG
196 CGAAA-GAGCGAGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
2212778 TGGATCGATAGAGTGGTAGGTGGGTTTGGGCACATCTTCATATTT-T-CGCATGCCAATGCCATT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG--TGCCAATGCCATT
*
2212841 TTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** *** *
2212906 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTCGTGGTTCGGGATTTTTTAAAATTTTTTCA
386 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* **
2212971 GAAGGATTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
451 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
2213036 ATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * *
2213101 ATAGTTCAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
2213166 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
2213231 TGTGTGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCTAACGCCGCTGGTTAGG-T-T----C
711 TGTGCGCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
* * * * * *
2213290 --T-CT--GACGGTGGTGCCCCGGCGAAGAAAAATGTGGCCCCAGGACATGCTCGAGCCCAGCAT
776 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
2213350 GTGCTGCTGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
841 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
2213410 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
** * * * * ** * *
2213475 CAGAAAGGTGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCTCTCTATGTGCTACCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * *
2213540 GCCACAACCCTTAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGA
131 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * ** * *
2213605 CGAAATGAGCGGGTGGGCGGGTGGGCGAGCACTACATCGGCCAAAGAGATGGGATGCGCAAGCCG
196 CGAAA-GAGCGAGCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
2213670 TGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCGTATTTCTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* * * *
2213735 TATGGCTTGTAAATTCACACAATGGTCTCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGATT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
2213800 CGTTTTTTATTTTTCACGATTTTCGAAACTTTTTGCGGCTCGGGATTTTTTAAAATTTTTTCGGA
388 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
2213865 AAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACCAAAACAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
2213930 TCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
2213995 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTT-AGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
2214059 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
2214124 TGCGCACACCCCTTCGGCCCCCCTGATCATCA-GAACACCAATGTCG-TCGATCAGGTTCTCCGA
713 TGCGCACACCCC-CCGGCCCCCCCGATCAT-AGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGG
* * * ** **
2214187 TGATGCTCCGGCGATGGTTCCCCGGTGAAGAAAAATGAAGCACCAGCACATGCCCGAGCCCAGCA
775 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* ** * * * *
2214252 TGTGCTACCTTAAACCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTTTGCTTA
840 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
**
2214313 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTTGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * ** * * *
2214378 CAGAAGGGCGGGATGCGCTAGTCGGGGATCGGCCGGGTCCCCTTCTATGTGTTGCCAATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * *
2214443 ACCGCAACCCTCGGTCAGGTTCGGTCTTAGACTGGGAATGAACTCCGTATGCCTATGCGAACCGA
131 GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * *
2214508 CGAAACGAGCGGGAGGGTGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCA
196 CGAAA-GAGCGAGCGGG-CGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
2214573 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATAG-CAATGCCATTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT-GCCAATGCCATTT
*
2214637 TTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
2214702 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGG
387 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
2214767 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCACAAAACAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
2214832 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
2214897 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * ** *
2214962 TCGAGGTTTGTTGAGGGATAGGGAGCCAATATAAGGGCCAAGTATGAGCACGCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
2215027 GTGCGCACAGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTTAGGTTCTCCGGTG
712 GTGCGCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCG
* * * * *
2215092 ATGGTCCGGCGATGGTGACCCGATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
777 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
**
2215157 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
842 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* ** * * * * *
2215216 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGAGTGCGGTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * *
2215281 CAGAAGGGCGAGATGTGCAAGCCGAGGATCGGTCAGGTCCCCCTCTGCGTGTTACTGGA-CCTGC
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-CGATCCTGC
** * * *
2215345 TATCGCAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
130 TGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
2215409 GACGAAACGAGCG-GACGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
194 GACGAAA-GAGCGAG-CGGGCGG--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
2215473 CCATGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAGTGCCAC
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
2215538 TTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
2215603 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGGGTTTTTTTTAAATTTTTTT
385 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
2215668 TGAAGGATTTTTGGCCCCAAACTTGGTTGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAA
450 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
2215732 AATACACCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
2215797 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGTGTGTGAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
2215862 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** * *
2215927 ATCTGCGCACACCCCCCCGGCCCTCCCGATCGTCA-GAACCTAAATGCTGCCGGTCAGGTTCTCC
710 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCAT-AGGAACCCCAATGCCGCTGGTCAGGTTCTCC
** * ** * * *
2215991 GATGATGCTCC-AGTGACAGTGCCCCGACGAAGAAAAATACGCCACCAGCACATGCTTC-AGCCC
773 GGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCC
* * *
2216054 AGCATGTACTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
836 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
2216119 GACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCCGTATGCCTCAGTCAACCCTTGA
1 GACTGGGAATGAACTCCGTATGC-----C-T--AA-G---T-C--A-ACC-CA--C-A------A
* * ** *
2216184 AACGAGCGTACGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTC
40 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
* * * * * *
2216249 CCCCTCTGCGTGCT--C--T-C--AT-----AACCCTCAGTCTGATCTGATCTTAGACTAGTAAG
105 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAAT
* * * * * * * *
2216302 GAACTCCGTATACCTAAGCCAACCGACGAAACGAGTGAGCAGGCGGGTAGGAGGCCAATATGCCA
170 GAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGG--GGCGGGCACTACGCCG
* *
2216367 GCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTC
232 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
2216432 ATATTTCTATGTGCGAATGCGATTTTTATG
297 ATATTTCTACGTGCCAATGCCATTTTTATG
2216462 CTCGAGCCCA
Statistics
Matches: 7184, Mismatches: 884, Indels: 457
0.84 0.10 0.05
Matches are distributed among these distances:
843 1 0.00
844 2 0.00
845 1 0.00
846 2 0.00
847 45 0.01
848 98 0.01
849 181 0.03
850 181 0.03
851 6 0.00
852 86 0.01
853 2 0.00
854 1 0.00
855 4 0.00
856 42 0.01
857 520 0.07
858 2 0.00
859 2 0.00
860 3 0.00
861 9 0.00
862 4 0.00
863 3 0.00
864 5 0.00
865 173 0.02
866 10 0.00
867 362 0.05
868 424 0.06
869 46 0.01
870 2 0.00
871 2 0.00
872 3 0.00
873 1 0.00
874 87 0.01
876 2 0.00
877 2 0.00
878 3 0.00
879 127 0.02
880 282 0.04
881 21 0.00
882 74 0.01
883 13 0.00
884 1 0.00
885 1 0.00
886 24 0.00
887 46 0.01
888 5 0.00
889 8 0.00
890 183 0.03
891 420 0.06
892 679 0.09
893 3 0.00
894 5 0.00
895 11 0.00
897 1 0.00
898 12 0.00
899 146 0.02
900 38 0.01
901 528 0.07
902 415 0.06
903 1483 0.21
904 92 0.01
908 1 0.00
909 1 0.00
911 2 0.00
912 1 0.00
915 2 0.00
916 1 0.00
917 165 0.02
918 3 0.00
919 2 0.00
920 2 0.00
922 1 0.00
924 1 0.00
929 67 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
GCCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAAGAGCGAGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCATAGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:2213409 original size:26 final size:26
Alignment explanation
Indices: 2213380--2213432 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2213370 CCGGTCCGAT
2213380 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2213406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2213432 C
1 C
2213433 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2215215 original size:26 final size:26
Alignment explanation
Indices: 2215186--2215238 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2215176 CCAGTCCGAT
2215186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2215212 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2215238 C
1 C
2215239 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2216125 original size:26 final size:26
Alignment explanation
Indices: 2216089--2216167 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2216079 CTGGTCTGAT
2216089 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2216115 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2216141 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2216167 C
1 C
2216168 CTCAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2216542 original size:26 final size:26
Alignment explanation
Indices: 2216506--2216558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2216496 TCGGTCCGAT
*
2216506 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
2216532 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
2216558 C
1 C
2216559 CGAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:2218271 original size:26 final size:26
Alignment explanation
Indices: 2218242--2218292 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
2218232 CCAGTCTGAT
* *
2218242 CTTAGACTGTGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
2218268 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
2218293 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:2219177 original size:26 final size:26
Alignment explanation
Indices: 2219141--2219190 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2219131 CTGGTCCGAT
*
2219141 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
2219167 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
2219191 CGCTTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:2219196 original size:26 final size:26
Alignment explanation
Indices: 2219141--2219196 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
2219131 CTGGTCCGAT
* *
2219141 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTACA
* *
2219167 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACA
2219193 CTTA
1 CTTA
2219197 AGTCAACCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:2220945 original size:26 final size:26
Alignment explanation
Indices: 2220909--2220987 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2220899 CCGGTTCACT
2220909 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2220935 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2220961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2220987 C
1 C
2220988 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2223631 original size:26 final size:26
Alignment explanation
Indices: 2223594--2223645 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2223584 CTGGTCTGAT
*
2223594 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
2223620 CTTAAACCAGGAATGAACTCCGTATG
1 CTTAAACCAGGAATGAACTCCGTATG
2223646 GCTAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAAACCAGGAATGAACTCCGTATG
Found at i:2223931 original size:895 final size:889
Alignment explanation
Indices: 2217492--2227312 Score: 10380
Period size: 895 Copynumber: 11.0 Consensus size: 889
2217482 GGGATGTGCA
* ** * * * *
2217492 ATCCTGCTGCCGCAACCCTTGGTCTGGTCCCATCTTAGACTAGGAATGAACTCCATATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* *
2217557 CCAACCGACGAAACGAGCGGGCGGGCGGGCAG-GCGGGCACTACGCCGGCCAGAGAGACGGGATG
66 CCAACCGACGAAAC-AGCGGGCGGGCGGGC-GTGC-GGAACTACGCCGACCAGAGAGACGGGATG
** * * ** *
2217621 CATAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAGCCAA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
*
2217686 TGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * **
2217751 AAGACGACTCGTTTTCTCTTTTTTACGATTTTCGAAACTTTTTGCGGTTCAAGATTTTTTGTAAT
258 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * * *
2217816 TTTTTCGGATGGAGGTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
323 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
2217881 CAAAAAAATTCAGCAAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCA
388 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
2217946 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGT
453 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
2218011 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
518 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * *
2218076 CACATCTTGTGCGCA-CACCCCCTGGCCCC-CCGATCG-TCGGAACCCCAATGCCGCCGGTTAAG
583 CACATCACGTGCGAACCACCCCC-GGCCCCTCCGATCGCT-GGAACCCCAATGCCGTC-G---A-
* * * * * *
2218138 TTCTCTGACGATGCTCCGGCGATGGAGCCCCGATGAAGAAAAATGCGGCACCAGCACTTGCCCGA
641 ---TC-G--GGTTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* ** * * * * *
2218203 GGCCAGCATGTGCTACCA-CAACCCTTGGTCCAGTCTGATCTTAGACTGTGAACGAACTCTGTAT
699 GCCCAGCATGTG-TTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
*** * * *
2218267 GCTTAGATTGGGAATGAACTCCGTAT-CCTAAGTCAACCCATGAAAGGAGCGTGCGGGCACTCAG
763 GCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** **
2218331 TCGGCCAGAGGGGTAGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTTTCG
828 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * * * *
2218393 ATACTGCTACTGTAACCTTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * * * *
2218458 CCAACCGACGAAACAAGCGGGCGGAC--GAGT--GGACACTACGCCGGCCAGAGAGATGGGTTGC
66 CCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGCGGA-ACTACGCCGACCAGAGAGACGGGATGC
* *
2218519 GCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
129 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * *
2218584 GCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCA
194 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
2218649 AGACGACTCGTTTTTTATTTTTCA-GAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
259 AGACGACTCGTTTTCTATTTTTCACG-ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
** * *
2218713 ATTTTT-GAAAGGAGTTTTCACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCAT-C
323 -TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
2218776 ATAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
387 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
2218841 CATTTCAAAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
452 CATTTC--AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
2218906 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
515 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * * ** * *
2218971 TCGCACATCATGGGTGTA-CACCCCCAGTCCCGC-CCAATCGCCAGAACCCCAATGCCGTTGGTC
580 TCGCACATCACGTGCGAACCACCCCC-GGCCC-CTCCGATCGCTGGAACCCCAATGCCGTCGATC
* * *
2219034 AGGTTTTTCGATTATGCTCTAGCGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGCC
643 -GG------G-TTCT-C-CGA-CGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCC
** * * * *
2219099 CGAGCCCAGCATGTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGT
696 CGAGCCCAGCATGTGTTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGT
* *** * * * * * * *
2219164 ATACTTAGATTGGGAATGAACTCCGTACGCTTAAGTCAACCGATGAAACAAGCGTGCAGGCACCT
761 ATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCT
* * * *
2219229 C-GCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTACATGCTGCCG
825 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * ** * *** * * *
2219293 ATCCTGATGCTACTAA-CCTTGGTCCAGTTTGATCTTGGTCTAGGAATGAACTCCGTATGCCTAT
1 ATCCTGCTGCTGC-AACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
** * * * * * *
2219357 TTCAACTGACGAAACTAGCGGGCGGACGGACGTGCGGGCACTACGTCGACCAAAGAGACGGGATG
65 ACCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGC-GGAACTACGCCGACCAGAGAGACGGGATG
* * * *
2219422 CGCAAGCCATGGATCGATAAGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* *
2219487 TGCCATTTTTATGGCTTGCAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* **
2219552 AAGACGACTCGTTTTCTATATTTCACGATTTTTGAAACTTTTTATTGTTC-AGGATTTTTTAAAA
258 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAA
** * * *
2219616 TTTTTTC-AGAAGGAGTTTTGGAACCAAACTCGGTAGACGTGATCCCTGTATTTTTATTGGCATG
322 TTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
2219680 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCT
386 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
2219744 CCATTTCAGACACTTTAATGGCTACAGGTAGCAAACTTGTAAAATCTCAAAGGCTCTTTAAGGAG
451 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
2219809 GTGTGTGTCCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCAT
516 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * **
2219874 CGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATCGCTGGAACCACAATGCCGCCGGTTA
581 CGCACATCACGTGCG-A-ACCACCCCCGGCCCCTCCGATCGCTGGAACCCCAATGCCGTCGATCG
* * * * * *
2219938 GGTTCTCCGACGATGCT--CCAGCGAAGAAAAATACGACAACAGCACATGCCCGAGCCCCGCATG
644 GGTTCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
2220001 TGCTGCCGCAACCCTCGGTCTGGTCCGATC-T----T----A-G-A---C---TG----G--C--
709 TGTTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAG
* * * * *
2220041 -AATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCT-AGGTCGGCCAGAG
774 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAG
* * * * * *
2220104 GGGCTGGATACGCAAGCCAGGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCG
838 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * *
2220156 ATCCTGCTG-TCGCAACCCTCAATCTGATCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAA
1 ATCCTGCTGCT-GCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* ** * * *
2220220 GCCAACCGACGAAACGAGCGGGCGGGCGGGCAAGCGAGCACTACGTCGGCCAGAGAGACGGGATG
65 ACCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGCG-GAACTACGCCGACCAGAGAGACGGGATG
* * *
2220285 CGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGTGTGCCAA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* * * *
2220350 TTCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
2220415 AAGACGACTCGTTTTCTCTTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAAT
258 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * *
2220480 TTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCATGTATTTTTTTTGGCATGCA
323 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * * *
2220545 TAAAAAAACTCAACTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCC
388 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
2220610 ATTTCGGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGT
453 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * * *
2220675 GTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCAAATATAAGGGTCAAGTACCAGCACCCATCC
518 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
2220740 CACATCATGTGCGCACACCCCCCCCGACCCC-CTCGATCG-TCGGAACCCCAATGTCGCCGGTCA
583 CACATCACGTGCG-A-ACCACCCCCGGCCCCTC-CGATCGCT-GGAACCCCAA--T-GCC-GTC-
* * * * *
2220803 GGTTCTCCGGTGATGCTCC-AGCGATGGTGCCTCAGTGAAGAAAAATGCGGCACCAGCACATGCA
639 -G--AT-CGG-G-TTCTCCGA-CGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATGCC
* * * *
2220867 CGAGCCGAGCATGTGCTGCCGCAACCCTCAGTCCGGTTCACTCTTAGACTGGGAATGAACTCCAT
696 CGAGCCCAGCATGTGTTGCAGCAA-CC-C--T-CGG-----TC-T--A----G--T---CT---G
* * **
2220932 ATGCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
736 AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * ** *
2220997 CCCATGAAACGAGTGTGCAGGCGCTCTGTCAGCCAGAGGTACGGGATGCGCAAGCCGGGGATCGA
800 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* **
2221062 TCGGGTCCCCCTCTACATGCTATCG
865 TCGGGTCCCCCTCTGCATGCTGCCG
* ** * * * ** * * *
2221087 ATCCTACTGCCACAACCCTCGGTCTGATCTGATGTTAGACTTGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * * * *
2221152 CCAACCGACGAAACAAGCGGGCGGACGGGC--G-GGCACTACGTCGGCTAGAGAGACGGGATGCG
66 CCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCG
* * * * *
2221214 CAAGCCATGGATCGATAGGGTGGTAGTTGGGTTTGGGCACATCTTCATATTTCTACATGCCAATG
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * * * * *
2221279 CAATTTTTATGGCATGTAAATTAATACAATGGTCCCTTAAGCATTCATGTGAAGTTTCCTGGCAA
195 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** ** *
2221344 GACGACTCGTTTTCTATATTTCACGATTTTCAAAACTTTTTGTGGTTC-AGGATTTTTAAAAATC
260 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAAT-
* * * * *
2221408 TTTTTC-AAAGGAATTTTGGCCCCAAAATTGGTATACATGATCCTCGTATTTTTGTTGGCATGCA
323 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
** *
2221472 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCC
388 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
2221537 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
453 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
2221602 GTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
518 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * * *
2221667 CAAATCATTTGCGCA-CACCCCCCGGCTCCC-CCGATC-ATCGAAACCCCAATGCTGACGGTCAG
583 CACATCACGTGCGAACCA-CCCCCGGC-CCCTCCGATCGCT-GGAACCCCAATGC---C-GTC--
* * * * * **
2221729 GTTCTTCAGCGATGCTCCGACGATGGTGCCTCGGCTAAGAAAAATATGGCACCAGCACATGCCCG
639 G---ATC-G-GGTTCTCCGACGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
2221794 AGCCCAGCATGTGCTGTCA-CAACCCTCGGTCT-GATCTGATCTTTGACTGGGAATGAACTCGGT
698 AGCCCAGCATGTGTTG-CAGCAACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGT
** * *
2221857 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGGGCGCTC
761 ATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * * * * * * * * *
2221922 AGTCGGCCAGAGGGGTGGGATGCATAAGCTGAGGATCGGCCGAGTCGCCCTCTACGTGTTGTCA
826 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * ** ** * * *
2221986 ATCCTACTGCTGTAACCCTCCGTTGGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* ** * * * *
2222051 CCAGACCGAACGAAGATGAGCAAGC-GGC-GG-G-GCGGGATTACGCTGGCCAGAGAGAC-GGAT
66 CCA-ACCG-ACGAA-A-CAGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGAT
* * *
2222111 GCGC-AGTCGTGGATC----GGGT-GTA-GTGGG-TTAGGTC-C-TCTTCATA--TCTG-ATGTC
127 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTGCGTGCC
* *
2222163 AAGGCCA--TTTATGGCTTG--AATTCATACAATGGTCCCTT--GCC-T-ATGTTGAAG-TTCAT
191 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCAT
* ** * * *
2222219 GGCAAGTACAACTC-TAATC-ATTTTTCATG-TCTTCTGAAA------GCGGTTCG-GCATTTTT
255 GGCAAG-ACGACTCGTTTTCTATTTTTCACGAT-TTTTGAAACTTTTTACGGTTCGAG-ATTTTT
* * * *
2222274 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATACTTGTATTTTTTTTGG
317 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
2222339 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
382 CATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
2222404 GTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
447 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
2222469 GGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCAC
512 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * * *
2222534 CCATTGCACATCATGTGCG--CTCACCCCCCCGCCCCCCCGATCACCGGAACCCTAATGCTACCG
577 CCATCGCACATCACGTGCGAAC-CA-CCCCCGGCCCCTCCGATCGCTGGAACCCCAATG---CC-
* * * *
2222597 GTCAGGTTGTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAT
636 GTC--G--ATC-GG-G-TTCTCCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACAT
* * * * * ** *
2222662 GCCCAAGCCCAGTATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACTC
693 GCCCGAGCCCAGCATGTGTTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTC
** * * *
2222727 CACATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
758 CGTATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
2222792 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGTATCGGTCGGTTCCCCCTCTGCATGCTGC
823 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGC
2222857 CG
888 CG
* * * * * * * *
2222859 AACCTGCTGCTGTAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * * *
2222924 CCAACCGAC-AAA-A-TGAGCGGGCGGGC--G-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
66 CCAACCGACGAAACAGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCGC
* * ** *
2222983 AAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCACATTTCTATGTTCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
2223048 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
2223113 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTCCGAGATTTTTTAAAATTTT
261 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * * *
2223178 TTTGGAAGTAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAA
326 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* ** * *
2223243 AAAAATTCAGCTAAAAATTTGAAGTGTGCAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATT
391 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
2223308 TCGGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
456 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
2223373 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
521 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * **
2223438 ATCATGTGCGCACACCCCCCTCCTGGCCCCTCCTATCGCAGGAA-CTTAATGCCGTCGATCGGGT
586 ATCACGTGCG-A-ACCACCC-CC-GGCCCCTCCGATCGCTGGAACCCCAATGCCGTCGATCGGGT
* * * *
2223502 TCTTCGGCGATGGTGCCTCCGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
647 TCTCCGACGATGGTGCC-CCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* ** * * * *
2223567 TTGCGGCAACCCTTAGTCTGGTCTGATCTTAAACTAGGAATGAACTCCGTATGCTTAAACCAGGA
711 TTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGA
* * * * * * **
2223632 ATGAACTCCGTATGGCTAAGTTAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCTTAGGGG
776 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
2223697 CGGGATGCACAAGCCGGGGTTTGG-CTGGGTCCCCTTCTGCATGCTACCG
841 CGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTGCCG
* * ** * *
2223746 ATCCTGCTACTGCAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
1 ATCCTGCTGCTGCAACCCTCAG-TCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
*
2223810 ACCAACCGACGAAACGAGCGGGCGGGCGGGCGTGCAGGAACTACGCCGGCCAGAGAGACGGGATG
65 ACCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGC-GGAACTACGCCGACCAGAGAGACGGGATG
* * *
2223875 TGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTAG-ATGCCA
128 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCA
* *
2223939 ATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCATTCACGTGAAGTTTCATGG
192 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
2224004 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
257 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * *
2224069 TGTTTTT-GGAAGGATTTTTGTCCCCAAACTTGGTAGACGTGATCCGTT-TATTTTTGTTGGCAT
322 T-TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCAT
* *
2224132 GCACTAAAAAATTCAGGTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
385 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
2224197 CCCATTTCAGACACTTTAATGGCTATTGGCCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
450 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * **
2224262 GGTGTGAGTTCTTGTGGTTTGATGAGAGATAGGAAGCCAATATAAGGGCCAAGTACCAGCACCCA
515 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * ** *
2224327 TCGCACATCATGTGCGCACACCACCCTCCGACCCCTCCGATCG-TCGAAACCCCAATGCCACCGG
580 TCGCACATCACGTGCG-A-ACCACCC-CCGGCCCCTCCGATCGCT-GGAACCCCAATGCCGTCGA
* * * *
2224391 TCAGGTTCTCCGACGATGGTGCCCCAGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGACTAG
641 TCGGGTTCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
2224456 AATGTGTTGTC-GGAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAACGAACTCCGTATGCTTA
705 CATGTGTTG-CAGCAACCCTCGGTCTAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * * *
2224519 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGTGGGCGCTCAGCCGGC
768 GACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
2224584 CAGAAGGGTGGGATGCGCAA------G--C---CGGGTCCCCCTCTGCGA-GCTGCCG
833 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC-ATGCTGCCG
* * ** * * *
2224630 ATCTTGCTACTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTTAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * *
2224695 CCAACCGATGAAACAGCGGGCGGGCGGGC--GCGCAA-TACGTCGACCAGAGAGACGGGATGCGC
66 CCAACCGACGAAACAGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCGC
** * * *
2224757 AAGCTATGGATCGATAGAGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTGCCAAAGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
2224822 CATTTTTTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
2224887 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
261 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
** * * *
2224952 TGAGGAAGGAGTTTTGGCCCCAAACTTGGCAGACCTGATCC-TGTATTTTTGTTGGCATGCACAA
326 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
2225016 AAAATTTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATT
391 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
** * *
2225081 TCAGACACTTTAATGGCTACTGGCAGCAGTCCTGTAAAATCTCAAATCCTCTTTAAGGAGGTGTG
456 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
2225146 AGTTCTCGAGATTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
521 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
2225211 ATCACGTGCGAA-CACCCCCCAGCCCCCCCGATCGCCGGAACCCCAGTGTCGTCGGTCAGGTTCT
586 ATCACGTGCGAACCA-CCCCCGGCCCCTCCGATCGCTGGAACCCCAATGCCGTCGATCGGGTTCT
* * ** * * *
2225275 CCGACGTTGGTGCTCCGACGAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAACATGTGCTG
650 CCGACGATGGTGCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTG
* * * * * *
2225340 CCGTAACCCTCGGTCTAGTCTGATCTGAGACTGGGAATGAAGTTCGTATGCTTAG-TCAGGGAAT
714 CAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCA-GGAAT
* * * * * * *
2225404 GAACTCTGTATCCCCAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCA
778 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * **
2225469 GGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCG
843 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * * * * * *
2225516 ATCATGCTGCTGCAACCTTCATTCCGGTTCAATCTTAGACTAGTAATGAACTCCTTATGCCTAAG
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * ** * *
2225581 CCAACAGACGAAACGAGCGGGCGGGCGGGCGGGC-G--CTACATCGGCCAGACAGACGGGATGCG
66 CCAACCGACGAAAC-AGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCG
* *
2225643 CAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
2225708 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCATCACGTGAAGTTTCATGGCAA
195 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
2225773 GATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
260 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * * * *
2225838 TTTCGAAAGAAGTTTTGGCCCTAAACCTT-TTAGACGTGATGCTTGTATTTTTTTTGGCAAGCAC
325 TTTCGAAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
2225902 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCA
389 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
2225967 TTTTAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGTTTTTTAAAGGGGTG
454 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
2226032 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
519 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
2226097 ACATCACGTGCGAA-CACCCCCTGGCTCCCT-CGATAGCTGAAACCCTAATGCTGTCGGTTAGGT
584 ACATCACGTGCGAACCACCCCC-GGC-CCCTCCGATCGCTGGAACCCCAATGCCGTC-G--A---
* * * * *
2226160 TCTCCGATGATGCTCCGACGATGGTGCCCTGGCAAAGAAAAATGCAGCACCAGCACATGCCCGAG
641 --T-CG--GGTTCTCCGACGATGGTGCCC-CGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
*
2226225 CCCAGCATGTGCTGCAGCAA-CC-C--TC--G---G-TC-----C---G---G---TCCG-AT-C
700 CCCAGCATGTGTTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
2226264 TTAGA-CTGGTAATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
765 TTAGACCAGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
2226328 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTATGTGTACTACCT
829 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
** * * * * *
2226389 ATCCTATTGCCGCAACCTTCTGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCT-AA
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
* * * * **
2226453 GCAACCGAC-AAA-A-----CGAGC-GG-GTG-GGCACTACGCCGACCAGAGAGATGGGATGCAT
66 CCAACCGACGAAACAGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCGC
* *
2226508 AAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTTTGCGTGCCAATGC
131 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * * *
2226573 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACATTAAGTTTCATGGCAAG
196 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
**
2226638 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTT
261 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
2226703 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTTTTGGGATGCA-AA
326 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
2226767 AAAATATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
391 AAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* ** *
2226832 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGAATTCTCTTTAAGGGGGTGT
455 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
2226897 G-GCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
520 GAG-TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
2226961 ACATCACGTGCGAA-CAGCCCCCGGCTCCC-CCGATCGCTGGAACCCCATTGTCGTCGGTCAGGT
584 ACATCACGTGCGAACCA-CCCCCGGC-CCCTCCGATCGCTGGAACCCCAATG-C--C-GTC--G-
* * * * ** *
2227024 TCTCCGGCGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGTAGCACCAGCACATGCTCGAG
640 -AT-CGG-G-TTCTCCGACGATGGTGCCC-CGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * *
2227089 CCCAGCATGTGTTACAGTAACCCTCGGTCTAGTCTGATCTTATACTGGGAATGAACTGCATAAGC
700 CCCAGCATGTGTTGCAGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
** * *
2227154 TTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
765 TTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
2227219 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCCCCCTTTGCATGCTGCTG
830 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
* * *
2227279 ATCCTGCTGCCGCAACCCACAGTCTGGTCCAATC
1 ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATC
2227313 CTATTTCTGC
Statistics
Matches: 7615, Mismatches: 1003, Indels: 615
0.82 0.11 0.07
Matches are distributed among these distances:
862 10 0.00
863 488 0.06
864 692 0.09
865 33 0.00
866 4 0.00
867 25 0.00
868 20 0.00
869 18 0.00
870 3 0.00
871 7 0.00
872 32 0.00
873 719 0.09
874 11 0.00
875 213 0.03
876 23 0.00
877 9 0.00
878 216 0.03
879 301 0.04
880 30 0.00
881 17 0.00
882 14 0.00
883 17 0.00
884 130 0.02
885 4 0.00
886 102 0.01
887 529 0.07
888 272 0.04
889 101 0.01
890 142 0.02
891 24 0.00
892 12 0.00
893 9 0.00
894 25 0.00
895 929 0.12
896 84 0.01
897 251 0.03
898 164 0.02
899 409 0.05
900 166 0.02
901 109 0.01
902 138 0.02
903 36 0.00
904 268 0.04
905 55 0.01
906 3 0.00
907 1 0.00
910 1 0.00
914 2 0.00
915 3 0.00
916 1 0.00
919 1 0.00
920 3 0.00
921 1 0.00
922 4 0.00
923 2 0.00
924 3 0.00
925 96 0.01
926 10 0.00
927 438 0.06
928 6 0.00
929 1 0.00
931 178 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
ATCCTGCTGCTGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAA
CCAACCGACGAAACAGCGGGCGGGCGGGCGTGCGGAACTACGCCGACCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCACGTGCGAACCACCCCCGGCCCCTCCGATCGCTGGAACCCCAATGCCGTCGATCGGGTTCTC
CGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCA
GCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCG
Found at i:2224525 original size:26 final size:26
Alignment explanation
Indices: 2224489--2224541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2224479 CTGGTTCGAT
2224489 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
2224515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2224541 C
1 C
2224542 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:2228049 original size:760 final size:758
Alignment explanation
Indices: 2226554--2228055 Score: 2121
Period size: 760 Copynumber: 2.0 Consensus size: 758
2226544 CACATCTTCA
* * * *
2226554 TATTTTTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCA
1 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCA
* * **
2226619 CATTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTT
66 CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTT
*
2226684 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTA
131 CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
2226749 TTTTTTTTGGGATGCAAAAAAATATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
196 TTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATT
* **
2226814 TGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGAA
261 TGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
*
2226879 TTCTCTTTAAGGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
326 TGCTCTTTAAGGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
2226944 GTACCAGCACCCATCGCACATCACGTGCGAACAGCCCCCGGCTCCCCCGATCGCTGGAACCCCAT
391 GTACCAGCACCCATCGCACATCACGTGCG-ACAGCCCCCGGCTCCCCCGATCGCCGGAACCCCAA
* * * * *
2227009 TGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGTAGCAC
455 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTAGCAC
* * * * * ** *
2227074 CAGCACATGCTCGAGCCCAGCATGTGTTACAGTAACCCTCGGTCTAGTCTGATCTTATACTGGGA
520 CAGCACATGCCCGAGCCCAGCATGGGCTACAGCAACCATCGGTCTAGTCCAATCTTAGACTGGGA
* * *
2227139 ATGAACTGCATAAGCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCG
585 ATGAACTGCAT-AGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* * * * *
2227204 TGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCCCCCTTTG
649 TGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCGCTCGGGTCCCCCTCTG
*
2227269 CATGCTGCTGATCCTGCTGCCGCAACCCACAGTCTGGTCCAATCC
714 CATGCTGCTAATCCTGCTGCCGCAACCCACAGTCTGGTCCAATCC
2227314 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCA
1 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCA
** *
2227379 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATC-ATTTTGGAAACTTTTTACGGT
66 CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTGGAAACTTTTTACGGT
* * * *
2227443 TCGGGATATTTTT-AAATTTTTTGGGAAGGAGTTTTGGCCCCAAACCTT-TTAGACGTGATCCTT
130 TCGAGAT-TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCTT
2227506 GTATTTTTGTTGGCATGCAAAAAAAATAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGA
193 GTATTTTTGTTGGCATGC-AAAAAAAT-ATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGA
* *
2227571 CCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
256 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
*
2227636 TCAAATGCTCTTTAAGGGGGTGTGAG-TTCTTGAGGTTTGATGAGTGATA-GGGGCCAATATAAG
321 TCAAATGCTCTTTAAGGGGGTGTG-GCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
2227699 GGCCAAGTAGCAGCATCCATCGCACATCATGTGCG-CA-CCCGTCCGGC-CCCTCCGATCGCCGG
385 GGCCAAGTACCAGCACCCATCGCACATCACGTGCGACAGCCC--CCGGCTCCC-CCGATCGCCGG
**
2227761 AACTTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCTCGACGAAGAAAA
447 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCT-GACGAAGAAAA
* * * * * * * *
2227825 ATGTGGCACCAGCACATGCCCGAGCTCGGCATGGGCTGCCGCAACTATCGGT-TCGGTCCAATGT
511 ATGTAGCACCAGCACATGCCCGAGCCCAGCATGGGCTACAGCAACCATCGGTCT-AGTCCAATCT
* *
2227889 TAGACTGGGAATGAACGTCGCCT-GCTGAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
575 TAGACTGGGAATGAAC-T-GCATAGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
2227953 CGAAACAAGCGTGCGGGCGCTCAGGCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCGACT-G
638 CGAAACAAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCG-CTCG
* * *
2228017 GGTCCCTCTCTGCGTGCTG-TCAATCTTGCTGCCGCAACC
702 GGTCCCCCTCTGCATGCTGCT-AATCCTGCTGCCGCAACC
2228056 TTCCGTCCGG
Statistics
Matches: 656, Mismatches: 71, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
758 3 0.00
759 10 0.02
760 434 0.66
761 65 0.10
762 143 0.22
763 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (758 bp):
TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCA
CATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTT
CGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCAAAAAAATATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGGCTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCACGTGCGACAGCCCCCGGCTCCCCCGATCGCCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTAGCACC
AGCACATGCCCGAGCCCAGCATGGGCTACAGCAACCATCGGTCTAGTCCAATCTTAGACTGGGAA
TGAACTGCATAGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG
CGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCGCTCGGGTCCCCCTCTGCA
TGCTGCTAATCCTGCTGCCGCAACCCACAGTCTGGTCCAATCC
Found at i:2228808 original size:26 final size:26
Alignment explanation
Indices: 2228779--2228831 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2228769 CTGATCCGAT
2228779 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2228805 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2228831 C
1 C
2228832 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2229715 original size:26 final size:26
Alignment explanation
Indices: 2229679--2229731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2229669 CTAGTCCGAT
* *
2229679 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2229705 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2229731 C
1 C
2229732 CTCAGTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:2230505 original size:903 final size:902
Alignment explanation
Indices: 2227314--2231377 Score: 5583
Period size: 903 Copynumber: 4.5 Consensus size: 902
2227304 GGTCCAATCC
* *
2227314 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCA
1 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
2227379 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATCATTTTGGAAACTTTTTACGGTT
66 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* *
2227444 CGGGATATTTTT-AAATTTTTTGGGAAGGAGTTTTGGCCCCAAACCTT-TTAGACGTGATCCTTG
131 CGGGAT-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTG
* *
2227507 TATTTTTGTTGGCATGCAAAAAAAATAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGAC
194 TATTTTTGTTGGCATGC-ACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
2227572 CATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
257 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
2227637 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGAT-AGGGGCCAATATAAGGG
322 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
* * ** * *
2227701 CCAAGTAGCAGCATCCATCGCACATCATGTGCGCAC-CCGTCCGG-CCCCTCCGATCGCCGGAAC
387 CCAAGTACCAGCACCCATCGCACATCATGACCGCACACC-CCCGGCCCCCT-CGATCGTCGGAAC
** * * * *
2227764 TTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATGT
450 CCCAATGTCGCCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* ** * *
2227829 GGCACCAGCACATGCCCGAGCTCGGCATGGGCTGCCGCAACTATCGGT-TCGGTCCAATGTTAGA
515 GGCACCAGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGA
* ** * *
2227893 CTGGGAATGAACGTCGCCTGCTGAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
579 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
2227958 CAAGCGTGCGGGCGCTCAGGCGGCCAGAGGGGCGGGATGCGCAAGACGAGGATCGACTGGGTCCC
644 CAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * * * * *
2228023 TCTCTGCGTGCTGTCAATCTTGCTGCCGCAACCTTCCGTCCGGTCCAATCTTAGACTAGGAATGA
709 CCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGA
* * *
2228088 ACTCCGTATGCCTAAGACAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACAACGTCGGC
774 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGC
*
2228153 CAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
839 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
2228217 GATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCG
1 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * **
2228282 CGTGAAGTTTCATAGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTAGTT
66 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
*
2228347 CGGGATTTTTTAAAATTTTTTCGGAAGTGA-TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT
131 CGGGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
2228411 ATTTTTGTTGGCAAGCACAAAAACATTCAGCTAAAAACTCGTAGTGTACAAGATTTTATGACCAT
195 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
2228476 TTGAAAAAGGTGTCCCTATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAA
260 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
2228541 ATGCTCTTTAAGGCGATGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCA
325 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCA
* * * *
2228606 AGTACCGGCACCCATCCCACATCATGACCGCACACCCCCCGGCCCCCTTGATCATCGGAACCCCA
390 AGTACCAGCACCCATCGCACATCATGACCGCACA-CCCCCGGCCCCCTCGATCGTCGGAACCCCA
* * ** *
2228671 ATGCCGTCGGTCAGGTT------C--T-CT--GACGATGGTGCCCCGGTGAAGAAAAATACGGCA
454 ATGTCGCCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * * * * *
2228725 CCAGCACATGCCCGAGCCCAGCATGTGTTGCCGTAACCCTCGATCTGATCCGATCTTAGACTGGG
519 CCAGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * *
2228790 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGC
584 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
* * * * * * *
2228855 CTACGAGCGTTCAGCCGACCAGAGGGGCGGAATGCGCAAGCCGGGGATCGGCTGGGTTCCCCTCT
649 GTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
* * * * * *
2228920 GTGTGCTGCTGATCTTGCTACTGCAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCC
714 GCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCC
* * *
2228985 GTATGCCTAAGCCAACCGACGAAAC---CA-GCGCGCGGGCGGGCCGGCACTACGCCGGCCAGTG
779 GTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAG
*
2229046 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCA
844 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * * *
2229105 TATTTTTGCATGGCAATGACATTTTTCTGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCA
1 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
2229170 CGTGAAGCTTCATGACAAGACGACTCGTTTTCTTTTTTTTCACGATTTTTAAAACTTTTTAG-GG
66 CGTGAAGTTTCATGGCAAGACGACTCGTTTTC-TATTTTTCATGATTTTTGAAACTTTTT-GCGG
* * *
2229234 TTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAATTTGGTAGACATGATCCTTG
129 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
2229299 TATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGATCA
194 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
2229364 TTTGAAAAAAGTGTCCGCA-TTCTAAACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
259 TTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * ** *
2229428 AAATGCTCTTTAA-GGAGTGTGAGTTCTCGAGATTTGATGAGGGATAAGGGGAAAATGTAAGGGC
323 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
*
2229492 CAAGTACCAGCACCCATCGCACATCATGACCGCACACCCCCCCGGCCCCCTCGATC-TCCGAAAC
388 CAAGTACCAGCACCCATCGCACATCATGACCGCACA--CCCCCGGCCCCCTCGATCGT-CGGAAC
** * * * *
2229556 CGTAATGCCGCTGGTTAGGTTCCCCGACGATGCTCCTACGATGGTGCCCCGGA-GAAGAAAAATG
450 CCCAATGTCGCCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATG
* * *
2229620 TGGCACCAGCACATGCTCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGA
514 CGGCACCAGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
* * **
2229685 CTGGGAATGAACTTCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTCAGTTTACCCACGAAA
579 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
2229750 CAAGCGTACGGGCGCTCAGACGGCCTGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCC
644 CAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * *
2229815 CCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTTGGTCCGATCCGATCTTAGACTGGGAATGA
709 CCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGA
* * * * *
2229880 ACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCGGGCGCGCACTACGCCGAC
774 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGC
* * *
2229945 CAGAGAGACGAGATGCGCAAGTCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
839 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** *
2230009 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCG
1 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-
* * * *
2230074 TC-TGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGT
65 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
*
2230138 TCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
130 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
2230203 A-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
195 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
2230267 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTATTGGCAGCAAACCTGTAAAATCTCAA
260 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
2230332 ATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
325 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCA
* *
2230397 AGTACCAGCACCCATCGCACATCATGACCGCACACCCCATTGTCCCCCTCGATCGTCGGAACCCC
390 AGTACCAGCACCCATCGCACATCATGACCGCACACCCC--CGGCCCCCTCGATCGTCGGAACCCC
* * * *
2230462 AACGTCGCCGGTCAGGTTCCCCGACGATGCTCCGATGATGGTGCTCCGATGAAGAAAAATGCGGC
453 AATGTCGCCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * *
2230527 ACCAGCACATGCCCGAGCCTGGCATGGGCTGCTGCAACCCTCAGTCCGGTCCGTTCTTAGACTGG
518 ACCAGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * *
2230592 GAATTAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
583 GAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
* * * * *
2230657 CGTGCGGGCGCTCAGCCTGCCAGAGGGACGGGATGCGCAA-CCGGGGATAGGTCGGGTCCCCCTC
648 CGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTC
* * * * * * *
2230721 TGCGTGCTACCGATCCTACTACCACAACCCTCGGTTCGGTCTGATCTTAGATTGGGAATGAACTC
713 TGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTC
* * * *
2230786 CGTATGCCTAAGCCAACTGACG--A--AGCAAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGA
778 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* **
2230847 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTAAA
843 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
2230907 TATTTTCTGCATGCCAAGGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTC
1 TA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
2230972 ACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGT
65 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * *
2231037 TCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
130 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
2231101 ATTTTTGTTGGGATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
195 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
2231166 TTCAATAAAGTGTCCCCATTTCAGACACTTTCATGGCTACCGGCAGCAAACCTGTAAAATCTCAA
260 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
2231231 ATGCTTTTTAAGGGGGTGTGAGTTC-CTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
325 ATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
** * *
2231295 AAGTACCCA-CACCCATCGCACATCATGTGCGCACACCCCCGACCCCCCCGATCGTCGGAACCCC
389 AAGTA-CCAGCACCCATCGCACATCATGACCGCACACCCCCGGCCCCCTCGATCGTCGGAACCCC
* *
2231359 AATGTCGCTGGTCAAGTTC
453 AATGTCGCCGGTCAGGTTC
2231378 TTTGACGATG
Statistics
Matches: 2783, Mismatches: 335, Indels: 92
0.87 0.10 0.03
Matches are distributed among these distances:
888 254 0.09
889 249 0.09
890 1 0.00
892 267 0.10
893 1 0.00
894 2 0.00
895 2 0.00
897 40 0.01
898 120 0.04
899 359 0.13
900 277 0.10
901 143 0.05
902 286 0.10
903 605 0.22
904 176 0.06
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGACCGCACACCCCCGGCCCCCTCGATCGTCGGAACCCCAAT
GTCGCCGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCCGGCATGGGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
ACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGC
GTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
Found at i:2230632 original size:26 final size:26
Alignment explanation
Indices: 2230582--2230634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2230572 CCGGTCCGTT
* **
2230582 CTTAGACTGGGAATTAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2230608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2230634 C
1 C
2230635 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2232209 original size:26 final size:26
Alignment explanation
Indices: 2232161--2232210 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2232151 GGTCTGATCT
* **
2232161 TAGACTGGGAATGAACTTGGTATGTG
1 TAGACTGGAAATGAACTCCGTATGTG
2232187 TAGACTGGAAATGAACTCCGTATG
1 TAGACTGGAAATGAACTCCGTATG
2232211 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGTG
Found at i:2232398 original size:4 final size:4
Alignment explanation
Indices: 2232391--2232424 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
2232381 GATGAAACGA
*
2232391 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GTGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
2232425 ACTACGCGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.00, C:0.24, G:0.74, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:2233106 original size:26 final size:26
Alignment explanation
Indices: 2233076--2233154 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
2233066 CCAATATGAT
* *
2233076 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2233102 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2233128 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2233154 C
1 C
2233155 CCAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2233598 original size:923 final size:927
Alignment explanation
Indices: 2232159--2234027 Score: 2524
Period size: 923 Copynumber: 2.0 Consensus size: 927
2232149 TCGGTCTGAT
** * *
2232159 CTTAGACTGGGAATGAACTTGGTATGTGTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGTGTAGACCGGAAATGAACTCCGTATGCCCAAGTCAACCC
* * * * * * *
2232224 ACAAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGCAGGATGCGCAAGCCGAGGATCGACCGG
66 ACAAAACGAGCATGCGGGCGCTCAACCAGCCAGAGGGCAGGATGCACAAGCCAAGGATCGACCGA
* *
2232289 GTCCCCCTCTGCATGCTTCCGATCCTGCTACCGTAACCCTCTATCCGGTCTGATCTTAGACTGGG
131 GTCCCCCTCTGCATGCTTCCGATCCTACTACCGTAACCCTCTATCCGGTCCGATCTTAGACTGGG
* *
2232354 AATGAACTCCGTATGCCTAAACCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGCGG
196 AATGAACTCCGTATGCCTAAACCAACCGACGAAACGA--------------GAGCGGGCGGGC--
*
2232419 GTGGGCACTACGCGGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACATGGG
245 G-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACATGGG
* *
2232484 TTTAGGCACATCTTCATATTTCTATGTGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATG
309 TTTAGGCACATCTTCATATTTCTACGTGCAAATGCCATATTTATGGCTTGTAAATTCATACAATG
* * * *
2232549 GTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCATTTTCTATTTTTTATAATTTTT
374 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTC
* * * *
2232614 GAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGATGGAGTATTGGCCGCAAACTTGGT
439 AAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTATTGGCCCCAAACTTGGT
* * * * *
2232679 GGACGTGAT-CTTTGTATTTTTTTTTGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
504 AGACATGATCCTTT-TATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCAAAGTGTA
*
2232743 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
567 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCA
* * * * *
2232808 AACTTGTAAAATCTCAAATGCTCTTTACGGAGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGG
632 AACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGATCTCAAGGTTTGATGAGGGATAGGG
** * * *
2232873 GGTGAATATAAGGGCCAAGTGCCAGCACCCATCGCACATTATGTGCGAACACACCC-CCCC-GCC
697 GGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGAACACACCCACCCCGGCC
* * * ** * *
2232936 CCCCCGATCGCGGGAACCCTAATGCC-TCCGGTCAGGTTCTCCGGTGATGCTCC-AGTGATGGTG
762 CCCCCGATCGCCGAAACCCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCCGA-CGACGGTG
* *
2232999 CCCCGACGAAGAAAAATG-TGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTT
825 CCCCGACGAAGAAAAATGTTG-CACCAGCAAATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* *
2233063 GGTCCAATATGATCTTAGACTGGGAATGAAATCCATATG
889 GGTCCAATACGATCTTAGACTGGAAATGAAATCCATATG
* *
2233102 CTTAGACTGGTAATGAACTCCGTATGCT-TAGACCGGGAATGAACTCCGTATGCCCAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATG-TGTAGACCGGAAATGAACTCCGTATGCCCAAGTCAACC
* * * * *
2233166 CACGAAATGAGCATGCGGGCGCTCAACCAGCCAGAGGGGCGGGATGCACAAGCTAAGGATCGATC
65 CACAAAACGAGCATGCGGGCGCTCAACCAGCCAGA-GGGCAGGATGCACAAGCCAAGGATCGACC
*
2233231 GAGTCCCCCTCTGCATGCTAT-CGATCCTACTGCCGTAACCCTC-AGTCCGGTCCGATCTTAGAC
129 GAGTCCCCCTCTGCATGCT-TCCGATCCTACTACCGTAACCCTCTA-TCCGGTCCGATCTTAGAC
* * *
2233294 TGGTAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-AGCGGGCGGGC-GGGCACT-TGC
192 TGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGAGCGGGCGGGCGGGGCACTACGC
**
2233355 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCA-GCACATC
257 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACATGGGTTT-AGGCACATC
*
2233419 TTCATATTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
321 TTCATATTTCTACGTGCAAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * **
2233484 TTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT
386 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACATTTTAC
* * *
2233549 GGTTTAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
451 GGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTATTGGCCCCAAACTTGGTAGACATGATCCT
* *
2233614 TTTATTTTTGTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
516 TTTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
*
2233679 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAGTGGCTACTGGCAGCAAACCTGTAAAATCT
581 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
2233744 CAAATGCTCTTTAAGGGGGTGTGAGATCTCAAGGTTTGGTGAGGGATAGGGGGCCCATATAAGGG
646 CAAATGCTCTTTAAGGAGGTGTGAGATCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
** * * * *
2233809 CCAAGTACCAACACCCATCGCACATCATGTGCTTACACCCCCACCCCTGGCGCCCTCGATTGCCG
711 CCAAGTACCAACACCCATCGCACATCATGTGCGAACACACCCACCCC-GGCCCCCCCGATCGCCG
2233874 AAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCCGACGAAGAAAA
775 AAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCCGACGAAGAAAA
* * * * * *
2233939 TTGTTGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTT
840 ATGTTGCACCAGCAAATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATACGATCTT
* *
2234004 AGACTGGAAATGAACTCCGTATG
905 AGACTGGAAATGAAATCCATATG
2234027 C
1 C
2234028 CTAAGTCAAC
Statistics
Matches: 818, Mismatches: 96, Indels: 42
0.86 0.10 0.04
Matches are distributed among these distances:
922 197 0.24
923 250 0.31
924 12 0.01
925 141 0.17
926 4 0.00
928 10 0.01
943 87 0.11
944 116 0.14
945 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (927 bp):
CTTAGACTGGGAATGAACTCCGTATGTGTAGACCGGAAATGAACTCCGTATGCCCAAGTCAACCC
ACAAAACGAGCATGCGGGCGCTCAACCAGCCAGAGGGCAGGATGCACAAGCCAAGGATCGACCGA
GTCCCCCTCTGCATGCTTCCGATCCTACTACCGTAACCCTCTATCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGAGCGGGCGGGCGGGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACATGGGTTTAGGCACATCTTCAT
ATTTCTACGTGCAAATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACATTTTACGGTTC
AAGATTTTTTAAAATTTTTTCGGAAGGAGTATTGGCCCCAAACTTGGTAGACATGATCCTTTTAT
TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGAGGTGTGAGATCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAACACCCATCGCACATCATGTGCGAACACACCCACCCCGGCCCCCCCGATCGCCGAAACCC
CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCCGACGAAGAAAAATGTTG
CACCAGCAAATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAATACGATCTTAGACTG
GAAATGAAATCCATATG
Found at i:2234489 original size:26 final size:26
Alignment explanation
Indices: 2234460--2234512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2234450 CCGGTCCGAT
*
2234460 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2234486 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2234512 C
1 C
2234513 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2234783 original size:171 final size:171
Alignment explanation
Indices: 2234540--2234847 Score: 438
Period size: 171 Copynumber: 1.8 Consensus size: 171
2234530 ATGAGCGGGT
* * *** *
2234540 GGGGCGGGATACGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCATGCTGTCG
1 GGGGCGGGATACGCAAGATGGGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCATGCAACCA
*
2234605 CAACCCTCGGTCTAG-TCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACGGACGA
66 CAACCCTCGGTCT-GTTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
2234669 AACGAGCGTGTGGGTGGGCGGGCTGGCACTACGTCGACCAGA
130 AAAGAGCGTGTGGGTGGGCGGGCTGGCACTACGTCGACCAGA
* * * * * * *
2234711 GGGGCGGGATGCGCAAGATGGGGATTGGTCGGGTCGCCCTCTACGTGCTGTCGATCCTGCAACCA
1 GGGGCGGGATACGCAAGATGGGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCATGCAACCA
* * *
2234776 TAACCCTCGGTCTGTTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
66 CAACCCTCGGTCTGTTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
2234841 AAGAGCG
131 AAGAGCG
2234848 GACGGGCAGG
Statistics
Matches: 118, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
170 1 0.01
171 117 0.99
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (171 bp):
GGGGCGGGATACGCAAGATGGGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCATGCAACCA
CAACCCTCGGTCTGTTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
AAGAGCGTGTGGGTGGGCGGGCTGGCACTACGTCGACCAGA
Found at i:2235557 original size:25 final size:25
Alignment explanation
Indices: 2235523--2235572 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
2235513 GGTCTGATCT
* *
2235523 TAGACTGGGAATGAATTTCATATGC
1 TAGACTGGGAATGAACTCCATATGC
2235548 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
2235573 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCCATATGC
Found at i:2237326 original size:26 final size:26
Alignment explanation
Indices: 2237297--2237349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2237287 CTGGTCCGAT
2237297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2237323 CTTAGACTGGTATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2237349 C
1 C
2237350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2238238 original size:26 final size:26
Alignment explanation
Indices: 2238202--2238254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2238192 CCGGTTCGAT
2238202 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2238228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2238254 C
1 C
2238255 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2238760 original size:893 final size:890
Alignment explanation
Indices: 2237079--2241805 Score: 5628
Period size: 905 Copynumber: 5.3 Consensus size: 890
2237069 TCAAATGCTC
*
2237079 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * ** * *
2237144 ACACCCCTCGGCCCCCTCGATCACCGGAAGCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTC
66 ACACCCCCCGGCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
** * * * * *
2237209 TGGCGATGGTGCCCCAGGGAAGAAAAATACGGCACCAGCACATGCCCAAGCCTAGCATGTGCTAC
131 CAGCGATGGTGCCCGA-CGAAGAAAAATGCGGCA-CAGCACATGCCCGAGCCCAGCATGTGCTAC
* * *
2237274 TGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTATTGA
194 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
2237339 ACTCCGTATGCCTAAGTCAACCCCACGGAACGAGCGTAC-GAGCGCTTAGCCG-GCCAGAGGGAC
259 ACTCCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCAG-GCGCTCAGCCGAGCCAGAGGGGC
* ** * * *
2237402 GGGATGCGCAAGCCGGGGATCAATCGGGTCCACC-TCTACGTGCTGCCGATCCTGCTACCACAAC
322 GGGATGCGCAAGCCGAGGATCGGTCGGGTCC-CCTTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * *
2237466 CCTCGGT-TCGGTCCT-AACTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCGACGAAAC
386 CCTCCGTCT-GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
2237529 GCGCGGGCGGGCAGGC-AGGCGGGCATTACGTCGACTAGAGAGACGGGATGCGCAAGCCGTGAAT
449 GAGCGGGCGGGCA--CTA------C---AC--CGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * **
2237593 CGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACAG
501 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
2237658 CCTGTAAATTCATACACTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATC-ACTCGTT
566 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTCGTT
* * * * *
2237722 TTCTA-TTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTTGGTAGGA
630 TTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
2237786 GTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTGAG
695 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
2237851 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCT
760 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
2237916 TAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
825 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
2237981 G
890 G
* * *
2237982 TTTGATGAGGGATAGGGGGCCAATAGAAAGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
2238047 ACACTCCCCCTGGCTCCCACGATCGTCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGTGATGC
66 ACAC-CCCCC-GGCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
* * * *
2238112 TCCAGCGATGGCGCCTCGACGAAGAAAAATGTGGCATCAGCACATGCTCGAGCCCAGTATGTGCT
129 TCCAGCGATGGTGCC-CGACGAAGAAAAATGCGGCA-CAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
2238177 GCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
192 ACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
2238242 GAACTCCGTATGCCTAAGTCAACTCACGAAACGTA-CGTGCAGGTGCTCAGCCGAG-CAGAGAGG
257 GAACTCCGTATGCCTAAGTCAACCCACGAAACG-AGCGTGCAGGCGCTCAGCCGAGCCAGAG-GG
* * * * * * *
2238305 TC-GGATGCGCAAGTCGGGGATCGGCCGGGTCCCACTTCTACGTGCTACCGATCCTGCTGCCCCA
320 GCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCC-CTTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * * *
2238369 ACCCTCCGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAT
384 ACCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*
2238434 GAGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTA
449 GAGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
2238499 GGTGGGTTTAGGTACATCTTAATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
514 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
2238564 ACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTCCTATTTTTCACG
579 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
2238629 ATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTCGGCAGGAGTTTTGGCCCGAAA
644 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
2238693 CAAT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCGAA
709 C-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
** * *
2238757 GTGTACAAGATTTTGTGACTGTTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTATTGG
773 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
2238822 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTGTC-GGAGG
838 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGT-TCTCGAGG
* *
2238876 -TTGATTGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCCAGCA-CCATCGTTACATTCATGT
1 TTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCG-CACA-TCATGT
* * * * *
2238939 GCGTACACCCTCCCCGACCCTATCGATCGTCGAAACCCCAATGCCG-CGGTCAGGTTCTCC----
62 GCGCACACCC-CCCGGCCCCCA-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTG
* * * *
2238999 --G----A-CGA----GCTCGACAAAGAAAAATGCACGGCACCATCACATTGCCCGAAGCCTAGC
125 ATGCTCCAGCGATGGTGCCCGACGAAGAAAAATG--CGGCA-CAGCACA-TGCCCG-AGCCCAGC
* * * * * *
2239053 ATGT-TTGCTGCAACCCTCGGTTCTTGATCCGATCTTAGACTAGAAATGAACTCCGTTATGCTTA
185 ATGTGCTACCGCAACCCTCGG-TC-TGGTCCGATCTTAGACTGGGAATGAACTCCG-TATGCTTA
* * * *
2239117 GA-TGGGAATGAACTCCATATGCCTAAGTCAACCCAACGGAACGAGCGTGCCGATCGCTTCAG-C
247 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCAG-GCGC-TCAGCC
* * * *
2239180 GA-CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTAGAG-CCCCTTCTGCGTGTTGCCAATCC
309 GAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCC
** * * *
2239243 TGCTATCGTAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
374 TGCTGCCGCAACCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2239308 CCGACGAAAGGAGCGAGGCGGGCGGGCGAGCAGGCATTACGCCGGCCAGAGAGACAGGATGCACA
439 CCGACG-AA--A-CGA-GCGGGC--G-G-GCA--C--TACACCGACCAGAGAGACGGGATGCGCA
*
2239373 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGA-ATCTTCATATTTCTACATGCCAATGC
491 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-ACATCTTCATATTTCTGCATGCCAATGC
* *
2239437 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAG
555 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
2239502 ATGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGGGATTTTTGAAAATTTT
620 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
2239567 TTCGGAAGGAGTTTAGGCCCCAAAGTTGGTAGATGGGATCCTTGTATTTTTGTTGGCATGCATAA
685 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
2239632 AAATATTCAGCTAAAAACTCGAAGTGTAGAATATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
750 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
2239697 TCAAACATTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-TG
815 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
2239761 AGTTCTCGAGG
880 AGTTCTCGAGG
* * *
2239772 TTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGTACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
2239837 ACACCCCCTCGGCCCCC-CTACCGAT-GGAACCCCAATGCTGTCGGTCATGTTCTCCGGTGATGC
66 ACACCCCC-CGGCCCCCACGATCG-TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGC
* * * **
2239900 T---GC-------CCCGACAAAGAAAAATGTGGCACTAGCACGTTACCGAGCCCAGCATGTGCTA
129 TCCAGCGATGGTGCCCGACGAAGAAAAATGCGGCAC-AGCACATGCCCGAGCCCAGCATGTGCTA
* * * *
2239955 CCGTAACCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
193 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
2240020 AACTCCGTCTGCCTAAGTCAACCCACGAAATGAGCGT-CTAGGCGCTCAACC-AGCCAGAGGGGC
258 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AGGCGCTCAGCCGAGCCAGAGGGGC
* * * *
2240083 GGGCTGCGCAAGCCGAGGATCGGTTGGGTCCCCCTT-TGCGTGCTGTCGATCCTACTGCCGCAA-
322 GGGATGCGCAAGCCGAGGATCGGTCGGGT-CCCCTTCTGCGTGCTGCCGATCCTGCTGCCGCAAC
* * * *
2240146 CCTTCGATCTGGTTTGATCTTAGACTGGAAATGAAC-CCGTATGCCTAAGCCAACCGACAAAACG
386 CCTCCG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
2240210 AGCAAACGGGCGGGCACTACACTTG-CCAGAGAGACGGGATGCGGAAGCCATGGATCGATAGGGC
450 AG----CGGGCGGGCACTACAC-CGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
2240274 GGTAGGTGGGTTTAGGCACATCTTAATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
510 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
2240339 TCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTT
575 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * * * *
2240404 CATGATTTTTGAAACCTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCC
640 CACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
2240469 CAAACTTGGTAGACGTGATCCTTCTATTTTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
705 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
2240534 GATGTGTCCAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTAC
770 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
2240599 TGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGG
835 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
2240655 TTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
2240720 ACAGCCCACCCGCCCGACCCCCTCGATCG-CTGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGA
66 ACA-CCC-CCCG---G-CCCCCACGATCGTC-GGAACCCCAATGCCGTC-GGTCAGGTTCTCCGG
* * * * * *
2240783 CGATGCTCC-GACGCTGGTGCCCCGAGGAAGAAAAATGCAGCAACAGCATATGCCCCAGCCCAGC
123 TGATGCTCCAG-CGATGGTG-CCCGACGAAGAAAAATGCGGC-ACAGCACATGCCCGAGCCCAGC
* ** * * * * *
2240847 ATGTACTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAAGGAACTTCGTATGCTTAGAC
185 ATGTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
2240912 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAGCC-AGCCA
250 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGAGCCA
* * * * * *
2240976 GAGGGGCGGGATGCGCAAGCTGAGGATCGGTTGGGTCCCCCTCTGCATGCTACCGATCTTGCTGC
315 GAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCTGC
* * * **
2241041 TGCAACCCTCAG-CTGGTCTGATCTTAGACTGGGAACGAACTTTGTATGCCTAAGCCAACC-ATC
380 CGCAACCCTCCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-C
* * * *
2241104 GAAACGAGCGGGCAGGCGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGAT
444 G-AA--A-C--G-A-GCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
2241169 CGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCTTTTTTATGG
501 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
2241234 CTTGTAAATTCATACAATGATCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTT
566 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
2241299 TCTATTTTTCACGATTTTCAAAATTTTTTGCGGTTTCGGGATTTTTTAAAATTTCTTCGGAAGGA
631 TCTATTTTTCACGATTTTCAAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
2241364 GTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATATTTGTTGGCATGCAAAAAAAAATTCAG
695 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * * *
2241429 CTAGAAACTCGAAGTGTACAATATTTTGTAACCATTTCAAAAAAGTGTCCCTATTTCAGACACTT
760 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
2241494 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAG
825 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
2241558 G
890 G
* * *
2241559 TTTGGCATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGC-CCTCA-GGCACATCTTGTT
1 TTT-G-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCATGTG
* * * * **
2241621 CGCATACTGCCCCCGGCCCCCCCGTTCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
63 CGCACAC--CCCCCGGCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
* ** * *
2241686 TGCTCCAACGATGGTGCCCCGGTGAAGAAAAATACGGCACGAGCACATGCCCTAGCCCAGCATGT
126 TGCTCCAGCGATGGTG-CCCGACGAAGAAAAATGCGGCAC-AGCACATGCCCGAGCCCAGCATGT
** * * *
2241751 GCTATTGCATCCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
189 GCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
2241806 CTAAGTCAAC
Statistics
Matches: 3303, Mismatches: 392, Indels: 261
0.83 0.10 0.07
Matches are distributed among these distances:
879 14 0.00
880 2 0.00
881 11 0.00
882 385 0.12
883 89 0.03
884 143 0.04
885 34 0.01
886 36 0.01
887 10 0.00
888 10 0.00
889 44 0.01
890 11 0.00
891 68 0.02
892 88 0.03
893 412 0.12
894 126 0.04
895 61 0.02
896 90 0.03
897 207 0.06
898 183 0.06
899 34 0.01
900 357 0.11
901 13 0.00
903 70 0.02
904 295 0.09
905 494 0.15
906 14 0.00
907 1 0.00
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCACGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
CAGCGATGGTGCCCGACGAAGAAAAATGCGGCACAGCACATGCCCGAGCCCAGCATGTGCTACCG
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGAGCCAGAGGGGCGGGA
TGCGCAAGCCGAGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCC
GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
Found at i:2240915 original size:26 final size:26
Alignment explanation
Indices: 2240879--2240931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2240869 CCGATCCGAT
*
2240879 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
2240905 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
2240931 C
1 C
2240932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:2242855 original size:26 final size:26
Alignment explanation
Indices: 2242817--2242869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2242807 CCAGTACGAT
*
2242817 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2242843 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2242869 C
1 C
2242870 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2244599 original size:26 final size:26
Alignment explanation
Indices: 2244570--2244619 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2244560 ATCGGATCTT
2244570 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
2244596 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
2244620 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:2244806 original size:860 final size:854
Alignment explanation
Indices: 2242200--2245722 Score: 3771
Period size: 863 Copynumber: 4.0 Consensus size: 854
2242190 AGACGGGATG
* * * *
2242200 CGCAAGCCGTGGACCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTACGTGCCAA
1 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* *** *
2242265 TGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCTTAAGCCTTCGTTTGAAGTTTCATCGC
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
* * *
2242330 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTC-AGGATTTTTTAAAA
131 AAGATGACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAA
* * * * * * *
2242394 TTTTTTTGGTAGCATTTTTGGCCCCAAACTTGGTAGACGTGAGCCTTGTATTTTGGTTGGCATGC
194 --TTTTTCGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
2242459 ACAAAAAAATTCAGCTAAAAACTTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
257 ACAAAAAAATTCAGCTGAAAAC-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
2242523 CCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG
321 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
2242587 GTGTGAGTTCTCAAGGTTTGATG-GGGATA-GGGGCCAAAAATAAGGGCCAAGTACCAGCACCCA
386 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCA
* * *
2242650 TCGCACATCATGTGTGCACA-CCCCCCGGCTCCCCCGATCGTCGGAACCCCAATGCCGCTGGACA
450 TCGCACATCATGTGCGCACACCCCCCCAGC-CCCCCGATCGCCGGAACCCCAATGCCG-T---C-
* * * *
2242714 GGTTCTCAGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGA-GGCACCAGCACATGCC
509 GG---TCA-G-G-TTCTCCGACTATGGTGCTCCGACGAAGAAAAAT-ACGGCACCAGCACATGCC
* * * * *
2242778 CAAGCCCAGCATGTGC--CAC--AAGCCTTGATCC-AGTACGATCTTAGACTAGGAATGAACTCC
567 CAAGCCCAACATGTGCTGC-CGTAAACCTCGGTCCGA-T-CGATCTTAGACTGGGAATGAACTCC
*
2242838 GTATGCTTAGACTGGGAATGAACTCCA-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
629 GTATGCTTAGACTGGGAATGAACT-CAGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCG
* ** * * * ** **
2242902 CTCAGCCGACCAGAGGGGCGGGATGCAAAAGTCGGGGATCAGCCGGGTCTCCCTCTACGCGCTGT
692 CTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTAC
* * * * * *** * * * **
2242967 CGATCTTACTGCTGTAACCCTCGGTCCAATCAGATCCTAGACTAGGAATGAACTTTGTATGCCTA
757 CGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
2243032 AGCCAACCGACGAAACGAGCGGGCGGACGGGCGGACGGGCACTACAC
822 AGCCAACCGACGAAACGA-------G-C--G-GG-CGGGCACT--AC
*
2243079 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCT
1 C-G-C------A----A-GC-C--G---TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
2243144 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
47 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
2243209 TCACTTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCA
112 TCACATGAAGTTTCATGGCAAGATGACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACG
*
2243274 GTTCGAGATTTTTTAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
176 GTTCGAGATTTTTTAAAATTTTTCG-AAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTG
** * * * * *
2243339 TATTTTTGTTTTCTTGCACAAAAAAATTCATCAGAAAACTCGAAGTGCACAAAATTTTGTGACCA
240 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
2243404 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
305 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
2243469 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
370 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** * *
2243534 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGA-CCCCCCGATCGCCGAAACCCA
435 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCC
* ** * * * *
2243598 AATGCCATCGGTCAGGTTCTTTG---GTGATGCTCCGACGAAGAGAAATGCGGCACCAGCACATG
500 AATGCCGTCGGTCAGGTTCTCCGACTATGGTGCTCCGACGAAGAAAAATACGGCACCAGCACATG
* * * * *
2243660 CCCAAGCCCAACATGTGTTGTCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
565 CCCAAGCCCAACATGTGCTGCCGTAAACCTCGGTCCGAT-CGATCTTAGACTGGGAATGAACTCC
* * * * * * *
2243725 ATATGCTTAGGCTTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGC
629 GTATGCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCGC
* ** *
2243790 TCAGCCGGCCAAAGGGGCGGGATGCACAAGTCGGGGTTCGGCCGGGTCCCCCTCTGCATGCTACC
693 TCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTACC
* * * * * * * *
2243855 GATCCTACTGTCACAACCTTCAGT-TCGATCTGATCTTAGACTGGGAAAGAACTCCCTAAGCCTA
758 GATCCTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
2243919 A-CCAACCGATGAAACGAGTGGGCGGGCGGGCACTA-
822 AGCCAACCGACGAAACGA----GCGGGCGGGCACTAC
* * * *
2243954 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTCTAGGCACATCTTCATATTTCTGTGTTCCAA
1 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
**
2244019 TGCCATTTTTATGGCTTGTAAATTCATACAATGGCTCCCTTAAGCCTTCACATG-AGTTAGATGG
66 TGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTTCACATGAAGTTTCATGG
2244083 C-AGATGACTCGTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCGAGATTTTTT-AAAT
130 CAAGATGACTCGTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
*
2244145 TTTGTCCGAAGGAGTTTTGGCCCCAAATTTGGTAGTCGTGGATCCTTGTATTTGTTTGTTGGCCA
195 TTT-T-CGAAGGAGTTTTGGCCCCAAATTTGGTAGACGT-GATCCTTGTA-TT-TTTGTTGG-CA
*
2244210 TGGGCCACAAAAAAAGTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
254 T--G-CACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
** *
2244275 TGTCCCCATTTCAGACACAATAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTGTA
316 TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * * * ** *
2244340 AGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGACCAATACAAGGGCCAGGTATTAGCG
381 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
2244405 CCCATCACACACCAT-TGCGCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
446 CCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGG
* * *
2244469 TCAGGTTCTCCGACTATGGTGCTCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
511 TCAGGTTCTCCGACTATGGTGCTCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAA
* *
2244534 CATGTGCTACCGTAAACCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCTCAGA
576 CATGTGCTGCCGTAAACCTCGGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *** *
2244599 CTGGGAATGAACTCCGTATGCCTAAGTCAAAAGATGAAACGAGCGTGCAGGCGCTCAACCGGCCA
640 CTGGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCAGCCGGCCA
* * * ** *
2244664 GAGTGGCGGGATGCGTAAGTCGGGGATCGGTCGGGTCCCACTCTGTGTGCTGCCGATCCTGCTGC
704 GAGGGGCGGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGC
* **
2244729 CGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
769 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
2244794 AAACGAGCGGGCGGGTGGGGGGGTGAGCACTACGC
834 AAACGAGCGGGC----------G-G-GCACTA--C
* *
2244829 CGGCCAGAAAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGCACATCT
1 C-G-C------A----A---GC----CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
2244894 TCATATTTCTGCATGCCAATGCCATTTTTATGGTTTGCAAATTCATACAATGGTCCCTGAAGCCT
47 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
2244959 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
112 TCACATGAAGTTTCATGGCAAGATGACTC-GTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * *
2245024 GTTTGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGTCCCAAACTTT-GTAGACGTGATCCT
176 GTTCGAGATTTTTTAAAA--TTTTTCGAAGGAGTTTTGGCCCCAAA-TTTGGTAGACGTGATCCT
* *
2245088 TGTACTTTTT-TTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATG
238 TGTA-TTTTTGTTGGCATGCAC-AAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTG
2245152 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT-TCTGGCAGCAAACC-GATAAA
301 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAT-TGGCAGCAAACCTG-TAAA
* **
2245215 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTGAATATA
364 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
2245280 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCG
429 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAG-CCCCCCGATCGCCG
* *
2245344 GAACCCCAATG-CGTCTGGTCAGGTTCTCTGGCGATGCTCCGGCTGATGGTGCCCCGACTAAGAA
493 GAACCCCAATGCCGTC-GGTCAGGTTCTC---CGA--------CT-ATGGTGCTCCGACGAAGAA
* * * *
2245408 AAATACGGCACCAGCACATGCCCTAGCCCAACATGTGCTGCCGT-AACAATCGGTCCGGTTCAAT
545 AAATACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGTAAAC-CTCGGTCC-GATCGAT
* * * *
2245472 CTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAATTAATTTCAGTATGCCTAAGTCAACC
608 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA-CTCAGTATGCCTAAGTCAACC
* * *
2245537 CATGAAACGAGCGTACGCGCGCTCAGCCGGCGCAGTAGGGGCAGGATGCGGCATAAGCCGGGGAT
672 CATGAAACGAGCGTGCG-GCGCTCAGCCGGC-CAG-AGGGGCGGGATGC-G--TAAGTCGGGGAT
** * * *
2245602 CGGCCAAAGTCCCCCCTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAGTCTGGTCTGATGT
731 CGGCC-GGGT-CCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCT
** * *
2245667 TAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGACGGGC
794 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
2245723 GGGCACTACG
Statistics
Matches: 2252, Mismatches: 270, Indels: 222
0.82 0.10 0.08
Matches are distributed among these distances:
852 7 0.00
853 49 0.02
854 36 0.02
855 12 0.01
856 99 0.04
857 20 0.01
859 16 0.01
860 229 0.10
861 1 0.00
862 3 0.00
863 249 0.11
864 16 0.01
867 1 0.00
870 1 0.00
871 1 0.00
872 6 0.00
873 1 0.00
874 1 0.00
875 2 0.00
876 2 0.00
877 1 0.00
878 8 0.00
879 3 0.00
880 2 0.00
881 1 0.00
882 1 0.00
883 4 0.00
884 48 0.02
885 1 0.00
886 16 0.01
887 197 0.09
888 1 0.00
889 1 0.00
890 5 0.00
891 6 0.00
892 193 0.09
893 64 0.03
894 96 0.04
895 13 0.01
896 40 0.02
897 196 0.09
898 248 0.11
899 56 0.02
900 14 0.01
901 2 0.00
902 1 0.00
903 1 0.00
904 5 0.00
905 106 0.05
906 46 0.02
907 3 0.00
908 11 0.00
909 1 0.00
911 15 0.01
912 2 0.00
913 92 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (854 bp):
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGC
AAGATGACTCGTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
TTTCGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
CGACTATGGTGCTCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGC
CGTAAACCTCGGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCAGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGTAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCAG
TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGGCACTAC
Found at i:2246099 original size:325 final size:324
Alignment explanation
Indices: 2245470--2246124 Score: 770
Period size: 325 Copynumber: 2.0 Consensus size: 324
2245460 GTCCGGTTCA
* * * * *
2245470 ATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGAATTAATTTCAGTATGCCTAAGTCAA
1 ATCTTAGACTAGGAACGAACTCCGTACGCTCAGACTGGCAATGAATATCAGTATGCCTAAGTCAA
** * *
2245535 CCCATGAAACGAGCGTACGCGCGCTCAGCCGGCGCAGTAGGGGCAGGATGCGGCATAAGCCGGGG
66 AACACGAAACGAGCGTACGCGCACTCAGCCGGCGCAGTAGGGGCAGGATGCGGCA-AAGCCGGGG
* *
2245600 ATCGGCCAAAGTCCCCCCTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAGTCTGGTCTGAT
130 ATCGGCCAAAGTCCCCACTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
* * * *
2245665 GTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGACGGGCGGGCACT
195 CTTAGACTAAGAATGAACACCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
* * * * *
2245730 ACGCCTGTCAGAGAGACAGGATGCGCAAGGCGTGGATCGATAGGGTGGTAGGTGGGGTTAGGTAC
260 ACGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGGTTAGGCAC
* * * *
2245795 ATCTTAGACTGGGAACGAACTCCGTATGCTCAGACTGGCAATGAA-ATCCGTATTCCTAAGTCAA
1 ATCTTAGACTAGGAACGAACTCCGTACGCTCAGACTGGCAATGAATATCAGTATGCCTAAGTCAA
* * *
2245859 AACACGAAACGAGCGTACGGGCACTCAGCCGGC-CAG-AGTGGC-GAGATG-TGC-AAGCCGGGG
66 AACACGAAACGAGCGTACGCGCACTCAGCCGGCGCAGTAGGGGCAG-GATGCGGCAAAGCCGGGG
* ** * ** * *
2245919 ATCGGTC-GGGT-CCCACTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAGTCCGGTCTGAT
130 ATCGGCCAAAGTCCCCACTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAGTCCGGTCTGAT
** *
2245982 CTTAGACTGGGAATGAACACCATATGCCTAAGCCAACCGACGAAATGAGCAGG-CGGGTGGGCGG
195 CTTAGACTAAGAATGAACACCATATGCCTAAGCCAACCGACGAAACGAGC-GGAC----GGGC-G
* * *
2246046 GTAAGCACTATGTCGGACAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGG
254 G---GCACTACGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGG
*
2246111 TTTAGGCAC
316 GTTAGGCAC
2246120 ATCTT
1 ATCTT
2246125 CATATTTCTG
Statistics
Matches: 278, Mismatches: 42, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
317 89 0.32
318 4 0.01
319 15 0.05
321 7 0.03
322 11 0.04
323 3 0.01
324 44 0.16
325 105 0.38
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.19
Consensus pattern (324 bp):
ATCTTAGACTAGGAACGAACTCCGTACGCTCAGACTGGCAATGAATATCAGTATGCCTAAGTCAA
AACACGAAACGAGCGTACGCGCACTCAGCCGGCGCAGTAGGGGCAGGATGCGGCAAAGCCGGGGA
TCGGCCAAAGTCCCCACTCTGCATGCTACCAATCCTGCTACCGCAACCCTCAGTCCGGTCTGATC
TTAGACTAAGAATGAACACCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
CGCCGGACAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGGTTAGGCAC
Found at i:2246743 original size:25 final size:26
Alignment explanation
Indices: 2246700--2246752 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
2246690 TCCAGTCCGA
2246700 GCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
*
2246726 GCTTAGACT-GGAATGAACTTCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
2246751 GC
1 GC
2246753 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:2248463 original size:26 final size:26
Alignment explanation
Indices: 2248434--2248486 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2248424 CCAGTCCAAT
2248434 CTTAGA-TCGGGAATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
2248460 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
2248486 C
1 C
2248487 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:2248948 original size:864 final size:863
Alignment explanation
Indices: 2246164--2251824 Score: 5342
Period size: 902 Copynumber: 6.4 Consensus size: 863
2246154 TGGCTTGTAA
* *
2246164 ATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGG-AAGACGACTCGTGTTCTATT
1 ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTCGTTTTCTATT
* *
2246228 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
65 TTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGG
*
2246293 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAA
129 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
2246358 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
194 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
2246423 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
259 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
*
2246488 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCC
324 GAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
2246553 CCCTGGCACCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGAGGATGCTCCGGCG
388 CCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCG
* *** * * *
2246618 ATGGTGACCCATTGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAA
452 ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
* ** * * * *
2246683 ACCTCTGTCCAGTCCGAGCTTAGACTAGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTTC
517 CCCTCACTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* *
2246747 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGCCAGCCAGAGGGGCGGGATGCG
582 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* ** ** * * *
2246812 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTACCACAACCCTCGGTCC
647 CAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAACCCTTGGTCC
* ** * * * *
2246877 GGTCCAATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACGTCGGCCCGAGA-GA-CGGG
712 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC--C-G-ACGAAACGAGCGGG
** * * * * * * * * ** * *
2246940 -ATGCGTAAGC-AGTGGATCAATAGGGT-GG-TAG-GTG--GGTTTAG-GCACATCTTCAT--AT
773 CGGGCGGAGGCGAGCGG-GCACTA-CGTCGGCCAGAGAGACGGGAT-GCGCA-AGC--CGTGGAT
*** * *** * ** *** * *
2246995 TTCT-GCGTTCCA-ATGCCATTT-TTTACTTGTAA
832 CGATAGGGTGGTAGGTG-GGTTTAGGCACAT-T-C
* *
2247027 ATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
1 ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** * * *
2247092 TTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAAGAGTTTCT-G
66 TTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG-AAGGAGTTT-TGG
* * * *
2247156 TCCAAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAA
129 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT--AAA
*
2247221 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATG
192 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
2247286 GCTA-TAGGCAGCAAACCTGTAAATTCTCAAATGCTCTCTAAGGGGGTGTGAGTTTTTGAGGTTT
257 GCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
* *
2247350 GATGAGGGATATGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTACGCACA
321 GATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
2247415 ------C--CCCCCAGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGA
385 CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG
* *
2247472 CGATGGTGCCCAGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGTCGC
450 CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* *
2247537 AA--C-C-CT-C-G---G----T---CT-GG--T--A--C-G-AT-CTTAGATTGGCAATGAACT
515 AACCCTCACTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
* * *
2247576 CCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCGGGATG
580 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* **
2247641 CGCAAGCCGGTGATCGATCGGGTCCCCCTCTACGTGCTAGC-GATCCTGCTGCTACAACCCTTGG
645 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCT-GCTGATCCTGCTGCCGCAACCCTTGG
* * *
2247705 TCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGT
709 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* ** * *
2247770 GGGC--AGGCGAGTGGGCACTAAATCGGCCAAAGAGACGGGATGCGCAAGCCGTCGATCGATAGG
774 GGGCGGAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
2247833 GTGGTAGGTGGGTTTAGGCACATCTTC
839 GTGGTAGGTGGGTTTAGGCACA--TTC
2247860 ATATTCCTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTC
1 --A------T-T--C-ATG-CA-----AT-G---G--------T-C------C-CTTAAGCCTTC
* ** **
2247925 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGT
28 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* ** * *
2247990 TCAGGATTTTTTTTAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGT
93 TCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
2248055 ATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
157 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
2248120 TTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTGCCGGCAGCAAACCTCTAAAATCTCAA
222 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
2248185 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
287 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
* * * *
2248250 GTACTAGCACCCATCACACATCAGGTGTGCACACCGCCCCCGGCCCCCCGATCGTCGGAACCCCA
352 GTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAACCCCA
** * *
2248315 ATGCCATCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCA
416 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * *
2248380 CCAGCACATGCCCGCGCCCAGCATTTGCTGCCGCAACCCTCACTCCAGTCCAATCTTAGA-TCGG
481 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCACTCCAGTCCGATCTTAGACT-GG
* * * *
2248444 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTCAGTCAACCCATGAAACGAG
545 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* * * * ** *
2248509 CGTGTC-GACGCTCAGTCGACCAGAGGGGCGAGATGCTTAAGCCGGGGATCGATCAGGTCCCCCT
610 CGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
* * *
2248573 TTACGTGCTGCTGATCCTGCTGCCGTAACCCTTGGTCCGATAC-AATCTTAGACT-GGAATGAAC
674 CTACGTGCTGCTGATCCTGCTGCCGCAACCCTTGGTCCGAT-CTGATCTTAGACTGGGAATGAAC
*
2248636 TCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGACGGGCGAGCGGGCACTACGTCG
738 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGA--GGCGAGCGGGCACTACGTCG
2248701 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TC
801 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTC
* *
2248763 -TTCATGCAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCATTTTCTATTT
1 ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
2248827 TTCATTATTTTTAAAACTTTTTGCGGTTCGGGTTTTTTTAAAATTTTTTCAGAAGGAGTTTTAGC
66 TTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGC
* * *
2248892 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTCGCATGCATAAAAAAATTCAGCTAAAAAC
130 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
2248957 TCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCT
195 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
2249022 ATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTTGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* ** *
2249087 AGGGATAGGAGGTCAATATAAGGGCCAAAAACTAGCACCCATCGCACATCATGTGCGCACACCCC
325 AGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
2249152 CATCGGTCCCCTCC-ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGTTGCTCCGAC
389 C-CCGG-CCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGC
* * * * *
2249216 GATGGTTCCCTGGCGAGGAAAAATGTC-GCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCGC
451 GATGGTGCCCCGGCGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
** * * *
2249280 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGAATGAACT
515 AACCCTCACTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
* * * * *
2249345 CCGTATGCCTGAGTCAACCCATG-AA--A-C--G-AGGCGCTCAGCCGGCCAGAGGGGCGGGCTA
580 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * *
2249403 CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG-TCGATCCTGCTGCCGCAACCCTCGG
645 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCGCAACCCTTGG
* **
2249467 TCC-AGTCTGATCTTAG-CTGGGAATGAACTCCGTATGCCTAAGCCGATTGACGAAACGAGCGGG
709 TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* *
2249530 CGGGC-GA-GCG-GCCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
773 CGGGCGGAGGCGAG-CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
2249592 GGGTGGTAGGTGGGTTTAGGCACATCTTC
837 GGGTGGTAGGTGGGTTTAGGCACA--TTC
2249621 ATATTTTACATGCCACTACCATTTTTATGGCTTGTAAATTCATACTATGGTCCTTTAAGCCTTCA
1 --A--TT-CATG-------CA-----AT-G---G--------T-C------CC-TTAAGCCTTCA
* * *
2249686 CGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGCGGTT
29 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* *
2249751 CGGGATTTTTTGAAATTTTTTCGGAAGGAGTTTT-ACCCCAAACTTGGTAGACGTGATCCTTGTA
94 CGGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
**
2249815 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCCACCATT
158 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
2249880 TGAAAAAAGTTGTCCCCATTTCAGACACTTTAATGGTTACAGGTAGCAAACCTGT-AAATCTCAA
223 TGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
2249944 ATGCTC-TTAAGGGGATGTGAGTTCTTAAGGTTTGTAATGAGGGGGATAGGGGCCAATATAAGGG
287 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG--ATGA--GGGATAGGGGCCAATATAAGGG
* * *
2250008 CCAATGTACCAGCAACCATCGTAACACCATGTGCGCACCACCCCCCCAGGGCGCCCCCCGATCG-
348 CCAA-GTACCAGCACCCATCG-CACATCATGTGCGCA-CACCCCCCC---G-GCCCCCCGATCGT
* * * *
2250072 CAGGAACCCCAATGCCGTCCGGTCAGG-T-T-C-ATCG--G-T---G-AATTGTGCACCTGACGA
406 C-GGAACCCCAATGCCG-CCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGC-CCCGGCGA
* * * * * ** ***
2250126 AGAAAATACAGGGGCCACCAGCTCATGCCTGAGGCCCTAGCCATGTGCTATCATAACCTTCTGGT
467 AGAAAA-A-TGCGG-CACCAGCACATGCCCGA-GCCC-AG-CATGTGCTGTCGCAACC--CTCAC
*
2250191 TCCAGTCCGGATCTTAGACTGGAGAATGAACCTCCGTGTATGCTTTAGACTTAGGACTATGAACT
524 TCCAGTCC-GATCTTAGACTGG-GAATGAA-CT-C-TGTATGC-TTAGAC-TGGGA--ATGAACT
* * * * *
2250256 CTGTACTGCCCTAACGTCAACCCATTGAACTATTGAGCGGTTGCGGACGCTCAGTCGGCAAGAGG
580 CCGTA-TG-CCTAA-GTCAACCCA-CGAA--A-TGAGC-G-TGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
2250321 GGCGGGATGCACAAGCCAGGGATC-AGTCGGGTACCCTTCTACGTG-TGGTCGATCCTGCTGCCG
636 GGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCG
* * *
2250384 CAACCCTTGGT-CTAGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
699 CAACCCTTGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
2250448 AACGAGCAGGCGAGC-G-GGCG-GACAGGCACTACG-CGGGCCAAAGAGACGGGATGCACAAGCC
763 AACGAGCGGGCGGGCGGAGGCGAG-CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCC
*
2250509 TTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTGCTGC
826 GTGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA----C--A-T--T-C
2250559 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
1 AT-----T--C------A-----TG----------CAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ** * * *
2250624 CCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTTGAGATTTT
38 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * *
2250689 TTTAAATTTTTTCGAAAGGAGTTTTGACCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTG
103 TTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * * *
2250754 GCATGCACAAAAACATTCAGCTAAAAACTCAAACTGTACAACATTTTGTGACCAATTGAAAAAAG
167 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
2250819 TGTCCCCATTTCAGACACTTCAATTGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTT
232 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
2250884 AGGGGGAGTGATTTCTTGATGTTTGATGAGGGATAGGAGGCCAATTTAAGGGCCAAGTACCAGCA
297 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCA
* ** ** *
2250949 CCAATCGCACATCATGTTAGCACA-CCCCCCGGCCCTCCATATCGTCGAAACCCCAACT-CCGCC
361 CCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAA-TGCCGCC
** * * * * * *
2251012 GGTCAGGTTCTTTGGCGATGCTCCAGTGATGCTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
424 GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * *
2251077 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TTCGGTTCGATCTTAGACTGGGAATGAAC
489 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC-ACTCCAGTCCGATCTTAGACTGGGAATGAAC
* *
2251141 T-TCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGG
553 TCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
* * * * * * *
2251205 GCGCTTAGCCGGCCAGAAGGGCAGGATGCGCAAGTCGGGGATCAACCGGGTCCCTCTCTACGTGC
617 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGC
* ** * *** * * *
2251270 TGCCGATCCTATTGCTGCAACCC-TCAACTGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGC
682 TGCTGATCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
2251334 CTAAGCCAACTGACGAAATGAGTGGGCGGGC--AGGCGGGCAGGCACTACGCCGGGCAGAGAGAC
747 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGCGAGCGGGCACTACGTCGGCCAGAGAGAC
* *
2251397 GGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTC
812 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG--CA-C-----A-TTC
2251458 TACGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
1 -A--T-----T--C-------A----TG----------CAATGGTCCCTTAAGCCTTCACGTGAA
* * *
2251523 GTTTCGTGGCAAGACGACTCGTTTTCTATTTGTCATGATTTTTGAAACTTTTTGTGGTTCGGGAT
35 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
*
2251588 TTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
100 TTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
2251653 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
164 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
2251718 AAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGTAGGAAACCTGCAAAATCTCAAATGCTCT
229 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
2251783 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
294 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
2251825 GCCANNNNNN
Statistics
Matches: 4042, Mismatches: 472, Indels: 530
0.80 0.09 0.11
Matches are distributed among these distances:
827 5 0.00
828 12 0.00
829 13 0.00
830 11 0.00
831 170 0.04
832 16 0.00
833 5 0.00
834 1 0.00
835 3 0.00
837 1 0.00
839 2 0.00
840 2 0.00
841 1 0.00
842 1 0.00
843 1 0.00
845 2 0.00
846 2 0.00
847 1 0.00
850 1 0.00
851 3 0.00
852 2 0.00
853 1 0.00
854 2 0.00
855 76 0.02
856 104 0.03
857 1 0.00
858 9 0.00
859 133 0.03
860 1 0.00
862 3 0.00
863 174 0.04
864 301 0.07
865 239 0.06
866 179 0.04
867 4 0.00
868 47 0.01
869 133 0.03
870 2 0.00
871 158 0.04
872 2 0.00
875 1 0.00
876 2 0.00
877 109 0.03
879 1 0.00
880 3 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 2 0.00
888 1 0.00
889 3 0.00
890 4 0.00
891 1 0.00
892 1 0.00
893 6 0.00
894 40 0.01
895 115 0.03
896 147 0.04
897 34 0.01
898 26 0.01
899 19 0.00
900 26 0.01
901 7 0.00
902 540 0.13
903 240 0.06
904 14 0.00
905 6 0.00
906 77 0.02
907 6 0.00
908 9 0.00
909 13 0.00
910 5 0.00
911 13 0.00
912 13 0.00
913 4 0.00
914 13 0.00
915 8 0.00
916 7 0.00
918 3 0.00
919 7 0.00
920 26 0.01
921 28 0.01
922 4 0.00
923 15 0.00
924 8 0.00
925 7 0.00
926 31 0.01
927 115 0.03
928 134 0.03
929 157 0.04
930 119 0.03
931 22 0.01
934 2 0.00
935 1 0.00
936 3 0.00
937 2 0.00
938 1 0.00
939 1 0.00
940 1 0.00
945 1 0.00
946 1 0.00
948 1 0.00
949 2 0.00
951 2 0.00
954 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (863 bp):
ATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
GGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGG
TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
CACTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
CCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGCAACCCTTGGTCCGATC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGA
GGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATTC
Found at i:2251152 original size:26 final size:26
Alignment explanation
Indices: 2251123--2251175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2251113 TCGGTTCGAT
*
2251123 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2251149 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2251175 C
1 C
2251176 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2253299 original size:26 final size:26
Alignment explanation
Indices: 2253270--2253320 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2253260 TGACTTAGGC
*
2253270 ATACGAAGTTTATTCCCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
*
2253296 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2253321 ATCGGTCCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:2254053 original size:26 final size:26
Alignment explanation
Indices: 2254017--2254069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2254007 GTTGACGTAG
* *
2254017 GCATACGGAGTTCATTGCCAGCCTAA
1 GCATACGGAGTCCATTCCCAGCCTAA
*
2254043 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGCCTAA
2254069 G
1 G
2254070 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGCCTAA
Found at i:2254945 original size:26 final size:26
Alignment explanation
Indices: 2254904--2254955 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2254894 GTTGACTTTG
* *
2254904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
2254930 GCATACGAAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
2254956 AATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:2255822 original size:26 final size:26
Alignment explanation
Indices: 2255785--2255837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2255775 GTTGAGTTTG
2255785 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2255811 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
2255837 G
1 G
2255838 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2257578 original size:26 final size:26
Alignment explanation
Indices: 2257542--2257594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2257532 GTTGACTTAG
*
2257542 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2257568 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2257594 G
1 G
2257595 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2258485 original size:26 final size:26
Alignment explanation
Indices: 2258449--2258527 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
2258439 GTTGACTTAG
*
2258449 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
2258475 GCATACGGAGTTAATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
* **
2258501 GCATACGGAGTTCATTAAAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
2258527 G
1 G
2258528 ATCGGACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:2261126 original size:26 final size:26
Alignment explanation
Indices: 2261097--2261149 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2261087 GTTCACTTAG
*
2261097 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
* ** *
2261123 GCATGCAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
2261149 G
1 G
2261150 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:2265543 original size:26 final size:26
Alignment explanation
Indices: 2265513--2265562 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2265503 GTTGACTTAG
2265513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2265539 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
2265563 CAGATTGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2266440 original size:26 final size:26
Alignment explanation
Indices: 2266404--2266456 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2266394 GTTGACTTAG
2266404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2266430 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2266456 G
1 G
2266457 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2267322 original size:26 final size:26
Alignment explanation
Indices: 2267286--2267338 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2267276 GTTGACATAG
2267286 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2267312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2267338 G
1 G
2267339 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2268043 original size:26 final size:26
Alignment explanation
Indices: 2268007--2268059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2267997 GTTGACTTAG
2268007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2268033 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2268059 G
1 G
2268060 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2269416 original size:26 final size:26
Alignment explanation
Indices: 2269373--2269424 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2269363 AAAACTCCTT
* *
2269373 CCGAAAAAATTTTAAAAAATCCTGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
*
2269399 CCGAAAAAAGTTTCAAAAATCATGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
2269425 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.54, C:0.15, G:0.10, T:0.21
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCATGAA
Found at i:2269840 original size:26 final size:26
Alignment explanation
Indices: 2269804--2269856 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2269794 GTTGACTTAG
2269804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2269830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2269856 G
1 G
2269857 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2270507 original size:26 final size:26
Alignment explanation
Indices: 2270471--2270533 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
2270461 ACACCTACAA
* *
2270471 CCCAGTCTAAGCATACGTAGTTTATT
1 CCCAGTCTAAGCATACGGAGTTCATT
2270497 CCCAGTCTAAGCATACGGAGTTCATT
1 CCCAGTCTAAGCATACGGAGTTCATT
2270523 CCCAGTCTAAG
1 CCCAGTCTAAG
2270534 ATCGGACCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
CCCAGTCTAAGCATACGGAGTTCATT
Found at i:2272213 original size:26 final size:26
Alignment explanation
Indices: 2272174--2272228 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
2272164 ATGGGTTGAC
*
2272174 CTAGGCATATAGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
2272200 CTAGGCATACAGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
2272226 CTA
1 CTA
2272229 AGATCGGACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
CTAGGCATACAGAGTTCATTCCCAGT
Found at i:2273097 original size:25 final size:25
Alignment explanation
Indices: 2273067--2273114 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
2273057 GTTGACTTAG
*
2273067 GCATACGGAGTTCATTTCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
*
2273092 GCATACGGGGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
2273115 GAAGATCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:2274904 original size:26 final size:26
Alignment explanation
Indices: 2274868--2274918 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2274858 TGACTTAGGC
*
2274868 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
2274894 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2274919 ATTGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:2275801 original size:26 final size:26
Alignment explanation
Indices: 2275771--2275823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2275761 GTTGACTTAG
*
2275771 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2275797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2275823 G
1 G
2275824 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2276703 original size:26 final size:26
Alignment explanation
Indices: 2276673--2276725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2276663 GTTGACATAG
*
2276673 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2276699 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2276725 G
1 G
2276726 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:2277606 original size:26 final size:26
Alignment explanation
Indices: 2277577--2277629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2277567 GTTGACTTAG
*
2277577 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
*
2277603 GCATAGGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
2277629 G
1 G
2277630 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:2277701 original size:904 final size:899
Alignment explanation
Indices: 2271327--2291622 Score: 20067
Period size: 902 Copynumber: 22.5 Consensus size: 899
2271317 GCTGACTTAG
* * * * *
2271327 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2271392 GTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGG---CA----C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
2271446 ACCTGACTGACGGCATTGAGCTTTCGGTGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * * * *
2271509 AGATGGGTGGTGGTACTTGGCCCTTATATTGGGCCCTTATCTCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2271574 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAA
*
2271639 -AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2271703 TTGGATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCTAAAAACTCCTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAA
* * * * *
2271767 AAA-TTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTC-T-
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
2271829 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
2271894 CATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCCATCGATCCACGGGTTT
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
2271959 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
2272020 AGGCATACGGAGTACATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GCAGAAGGATTGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
2272082 CAGCACGTAGAGGGGGACCCGGCCGATCCCCAGG-TTGCTCATCCCGCCCCTCTGGCCGACGGAG
778 CAGCACGCAGAGGGGGACCCGACCGAT-CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** * ** *
2272146 CACTCGCACGCTCGTTTTATGGGTTGACCTAGGCATATAGAGTTCATTCCCAGTCTAG
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
2272204 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCATATGTTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2272269 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTC-ACCGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * * * *
2272333 ACCTGACGGGTGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCCCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * *
2272397 CAATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
2272462 ACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGTTGCCAGTAGCCGTTAAAGTGTCTGTAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
2272527 GCAGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTCT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-T
* * * *
2272592 -TGCATGCCAACAAAAATACAACGATCACCTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * *
2272656 AA-TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * **
2272720 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGTGATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
2272785 ATTCGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTACCAATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
2272850 GCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCTGCTTATTTGGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* **
2272907 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCAAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
2272972 AGCACACAGAGGGCGACCCGACCGATCCCCGACTTGCACATCCCGCCCATCTGGCCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
2273037 CCCGCACGTTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTTCCAGTC-AA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2273092 GCATACGGGGTTCATTCCCAGTCGAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2273157 CTCGGGCATGTGCTGGTGCTGGATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CGGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG-AG
* * * *
2273221 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGCCGGGGGTTGTGCGCCCATGAT
130 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCG--GGGGGGT-TGCGCACATGAT
* * ** * *
2273286 GTGCGATGGGTGCCGGTTCTCAGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
2273351 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2273416 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
2273481 TCT-TGCACT-CCAA-AAAAATACAAGGATTATGTCTACCAAGTTTGGGACCAAAACTCCTTCTG
387 T-TGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * *
2273543 GAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTT
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
2273608 GGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2273673 TGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGC
580 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
2273738 TTGCGCATCCCGTCTCTCTGGCCGAC-TAGTGCCCGCCCGCCCGCCCGCTC-ATTCGTCGGTTGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * *
2273801 CTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTACGGTAGTAAGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
2273865 CGACAGCACGTAGTGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCCCCCCTAGCCGGCT
775 CGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
2273929 AAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCCAATCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
2273990 GAAAACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAAGGCAGCACACGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2274055 CTCTGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCGCCATCGCCGGAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
2274120 ACCTGACCGACGACATTGGGG-TTCTGACGATCGGGGGGG-C-GGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGT
* * *
2274182 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTGA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2274247 CACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * * *
2274312 TGAGGACATTTTTTTCAAATGGCCACAAAATATTGTACACTTCGAGTTTTTGGTTGACTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2274377 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * ** *
2274442 AAATTTAAAAAATCCTGAACCCCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
2274507 TGCCTTGAAACTTCACATGAAGGCTTAAGGGAACATTGTATGAATTTATAAACCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
2274572 ATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCCTAC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
2274637 GCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
2274702 TTTAGACATACGGAGTTCATTCCCAGTCTCAGATCAGACCGCACCAAGGGTTACGGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * * * *
2274767 CGACAGCACATAGAGAGGGACCCGGCTGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGGCTG
775 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
2274832 AGCGCCTGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
2274892 GGATACGAAGTTCATTCCCAGTCTAAGATTGGATAGGACCGAGGGTTACGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
2274957 CTCGGGCATGTGCTGGTGCCACATTTTTCTACCCCGAGGTACCATTGCAGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** * *
2275022 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGAGGGGCCGGGGGGAGGTGTTCTTACATCATA
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGG-GGT-TGCGCACATGATG
* * * * * **
2275087 TGTGATGGGTGCTAGTAATTGGCCCTTATATTTGCCCCCTATCCTTCATCAAACCTCGTCAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* ** * *
2275152 GCACTTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2275217 ATGGGGACATTTTTTTCAAAT-GTCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
2275281 TTGTGCTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * * ** * *
2275346 AAAAATTTAAAAAATCCTGAACTGTAAAAAGTTTGGAAAATC--GGAAAATAGGAAAACGAGTCA
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATA-GAAAACGAGTCG
* * *
2275409 TCTTGCCTTGAAGCTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
2275474 GGCATTGGCACGTCGAAATATAAACATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCC
581 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2275539 TACGCATCCCGTCTCTCTGGCCGGCGAAAAG-GCCCACCCGCCCGCCCGCCGCTCGTTTCATCGA
646 TGCGCATCCCGTCTCTCTGGCCGGCG--TAGTGCCCGCCCGCCCG--C-CCGCTCGTTTCGTCGG
* * * * * * * * *
2275603 TTGGCTTAGACATATGGAGTTCATTCCTAGTCTCAGATCAGACTGAATCGAGGGTTACGGCAGCA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
** * * * * *
2275668 GGATCGATAGCACACAAAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
2275733 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCGTTCCCAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
2275797 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2275862 CTCGAGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCGCCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * **
2275927 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTTATGGACACAATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGCGCACATGATGTGC
* * * *
2275992 GATGGGTGCTGGTAATTGGCCCTTATATTGGCACTCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2276057 CCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2276122 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2276187 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * * * *
2276252 TTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTAGTCTTA
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
** * *
2276317 TTATGAAACTTCACGTGAAGCCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
2276382 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCAC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
2276447 ATCCTGTCTCTCTGGCCGACGTAGTGCATGGCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGC---CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
2276512 AGGCATACGGACTTCATTCCCAATCTAAGA-CTAGATCAGACCGAGGGTTGCGGCAGCAAGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
2276576 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTTTGGCCGACTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
2276641 CGCCCGTACGCTCGTTTCATGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2276699 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TGAAGGGTTGCAGCAGCATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGGCAGCACATGCTGG
* ** * *
2276763 GCTCGAGCATGTGCTGGTGCTTCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
2276828 AACCTGGCCGATGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGCGCACATGATGTG
* * * * *
2276893 CTATTGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2276958 ACCCCCTTAAAGAGCACTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2277023 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
2277088 TGGATGCAAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAAATCCTTCCAAAAA
390 TGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* ** *
2277153 AATTTTAAAAAATCCTGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2277218 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2277283 ATTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACAGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
2277348 GCATCCTGTCTCTCTGGCCGGCGTAGTGCATGCGTGCATGCCCGCCCGCTCTTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGC---C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
2277413 CTTAGGCATACGGAATTCATTCCCAATCTAAGA-CTAGATCGGACCGAGGGTTGTGGCAGCAAGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * *
2277477 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCCCACCCCTATGGCCGGCT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
2277542 GAGAGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2277603 GCATAGGGAGGTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
2277668 CTTGGGCATGAGCTGGTGCTGCATTTCTCTTCATCGGGGCACCATCGCCTGAGCAGCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2277733 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGTGCACATGGTGTGT
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGCGCACATGATGTGC
** * *
2277798 GATGGGTGCTGGTTGTTGGCCCTTATATTGGCACTCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2277863 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2277928 GGGACACTTTTTTTAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2277993 GCATGCCAACAAAAATACATGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * *
2278058 TTTAAAAAAATCCCGAACCGTAAAACGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
2278123 CCATTAAACTTCACGTGAAGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
2278188 TGGCATGTTAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCATGCCTTCGC
586 TGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GC
* * * * *
2278253 GCATCCCGGTCTCTCTGGCGCGACGTCAGT----TCCCG-CCGCCCGCTACGTTTCATCAGTCGG
649 GCATCCC-GTCTCTCTGGC-CGGCGT-AGTGCCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGG
** * * * * *
2278313 CTTAGGCATACGGCTTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTACGGTAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * ** * * * *
2278378 CGGTAGCACACAGAGGGGGACTTGACCAATCCCTGACTTACGCATCCCGCCCCTCTGGCTGGCTG
775 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* ** * *
2278443 TAGCGCCCCGGCCACACTTATTTTGTGTGGTTGAACTTATAGGCATA-AGAGTTCATTCCCAGTC
840 -AGCG-CCC-G-CACGCTCGTTTCGTG-GGTTG-AC-T-TAGGCATACGGAGTTCATTCCCAGTC
*
2278507 CAA
897 TAA
* * * * *
2278510 GCCATACAGAGGTTCATTCCCCATTTCTAAGATCAGGACTGGACCGAGGGTTGTGGCGGCACATG
1 G-CATACGGA-GTTCATT-CCCA-GTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCACATG
* *
2278575 CTGGGTTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCTGTCAGGGCACCAT---C---G---C--
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGCCGGAGCATCGT
* ** * * ** *
2278628 CGGAGAACCTGACTGGTGGCATTAGGGTTCCGATGATTC-GGGGGGCCGGGGGTG-TGCGCACAT
125 CGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGA-TCGGGGGGGCCGGGGGGGTTGCGCACAT
* *
2278691 GGATGGTG-GAGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
189 -GAT-GTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
2278755 AGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGG
251 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
2278820 GTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGCACACTTCGAGTTTTTAGCTGA
316 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
2278885 ATTTTTTTTGTGCATGCCTACAAAAATAAAAGTATCACGTCTACAAAGTTTGGGGCCAAAACA-C
381 A-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATC
* * * *
2278949 CTTGCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
444 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
* * * *
2279014 TGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGAACTTTGTATGAATTTACAAGCCA
509 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
2279079 TAAAAATGGCATTCGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATC
574 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* *
2279144 CACGGCTTGCACATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
639 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * *
2279209 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGGGTTACGGCAG
704 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * ** * *
2279274 CAAGATCGACAGCACATAGAGGGGGACCCGACCAAT-CCTGGGCTTCCGCATCCCGCCCCTCTGG
769 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGG
** *
2279338 CCGGCTGAGCGCTTGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
833 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
2279403 AA
898 AA
* * * *
2279405 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
2279470 GTCGGGCAACTGCTAGTGCCGTATTTTTCTTCGCCGGGGTACCAT---C---G--TCG--GAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2279525 ACCTGACCGACGGCAATGGGG-TTCTGACGAT--AGGGGGCC-GGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGT
* *
2279586 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2279651 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCCGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
2279716 TGGGGACACTTTTTTCAAATGGTCACCAAATCTTATACACTTCGAGTTTTTAGATGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * *
2279781 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATATTTCTGAAAG
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * * *
2279846 GATCTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2279911 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
2279976 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGATTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2280041 GCATCCCATCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
2280106 CTTAGGCATACAGAGTTAATTACCAGTCTAAGATTGGACCAGACTGAGGGTT-CTGGCAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCAGGA
* ** * * *
2280170 TCGGCAGCACACAGTA-GGGGACCCGGTCGAT-CCTCAGCTTGCGCATCCCGCCCATCTGGCCGA
774 TCGGCAGCACGCAG-AGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
2280233 CTAAGTGCCCGCACGCTTGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2280296 GCATAGGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAAGGTTACGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
2280361 CTCGGGCATATTCTGGTGCCACATTGTTCTTCGTCGGGGCACCATAGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * * *
2280426 ACCTGACCGACGACATTGGGGTTCCGGTGATCAGGGCGGTCGGGGGGGTGTACGCACATTATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * *
2280491 CGATGGGTGCTGGGACTTTGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2280556 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2280620 GAGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2280685 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* ** * * * * *
2280750 ATTTAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2280815 GCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
2280880 TTGGCACAAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * *
2280945 CATGTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCATTTCCTCGGTTCGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * *
2281010 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTAACGGTAGTAGGATCGGCA
715 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
** ** * ** * *
2281075 GCACATAGAGGCAGACCCGACCAATCCCTGGAGTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
780 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
2281140 CCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAC
845 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2281195 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
2281260 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
2281325 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGTGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGCGCACATGATGTGC
* * *
2281390 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * ***
2281455 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAAACTCT-AAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2281519 GGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2281584 GCATGCAAACAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* *
2281649 TTTTAAAAAATCCCGAACCG-TAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
2281713 CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2281778 TGGCATGTAAAAATATGAAGATGTCCCTAAACCCGCCTACCACCCTATCGATCCATGCCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** ** * * * * *
2281843 ATCCCGTCTCTCTGGCCGATGTAGAT-----CTTGCTTGTCCACTCGTTTCATCAGTCGGCTTAG
651 ATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** *
2281903 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATAGAGGGTTGCAGCAGCAGGATCGGCA
715 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * **
2281968 GCACGTAGAGGGGGACCCGACCAATCCCCGACTTGCACATCCCGCCCCT-TCGATCGGCTGAGCG
780 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCG
* ** * * *
2282032 CCCGCATGCTTATTTCGTGTGTTGATTTAGGCATACGGAGTTCATTCCCAGTCCAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ***
2282088 GCATACAGAGTTCGTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCACATGCTACT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2282153 TTCGGGCATGTGCTGGTGCCACATTGTTCTTCGTC-AGGCACCAT---C---G---C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** *
2282206 ACCTGACCGGCGGCATTAGGGTTTCGATGATCGGGGGGGCCGGGGTGGTGTT-CACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGG-GG-GTTGCGCACATGATGT
* * *
2282270 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2282335 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
2282400 TGGGGACACTTTTTTCAAATGGTCGGAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
2282465 GTGTATGCCTACAAAAATA-AAGGTATCATGTCTACAAAGTTTGGGGCCAAAACGT-CTTCCAAA
389 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAA
* * * * *
2282528 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAATTTATGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
2282593 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
2282658 GCATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGTTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2282723 GCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTT-GCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * *
2282787 TAGGCATATTGGAAGTTCATTCCCAGTCTAAGATCTAAACCGAACCGA-GGATGTGGCAGC-GGA
712 TAGGCATA-CGG-AGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * **
2282850 TTCGCCAGC-CAACAGA-GGGAACCCGATCGAATTTC-GGCTT-CTTGCAT-CCGCCCCTCT-GC
774 -TCGGCAGCAC-GCAGAGGGGGACCCGACCG-ATCCCTGGCTTGC--GCATCCCGCCCCTCTGGC
* *
2282909 CGACTGAGCAACCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCT
834 CGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
2282973 AA
898 AA
* * * * * *
2282975 GCATACTGAGTTCCATTCCTAGTCGAAGAT-GGACCCAGACCAAGGGTTGCGGTTAGGCAACATG
1 GCATACGGAGTT-CATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGG-CA-GC-ACATG
* * * * * * *
2283039 CCGGGAGGATCGGGCAAGTGCTGGTGCCGTA-TTTT-TTC-ACCGGGCACCATCGTCGGAG-A--
61 -C-TG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * * *
2283098 ATC-G-G-ACCTG--C-A-GGCAATGGGG-TTCCGCGATC-GAGGGGCCGGGGGGGTGTGCGCAC
123 GTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCAC
* * * *
2283154 ATGATGTG-GAATGGGTGGTGGTACTTGGCCCCTTATATTCTGGCCCTCTATCCCTCGTGAAACC
187 ATGATGTGCG-ATGGGTGCTGGTACTTGG-CCCTTATA-T-TGGCCCCCTATCCCTCATCAAACC
* * * *
2283218 TCCGCGGAA-TCACACCCCCTTTAAAGGGCATTCGGAGATTTTACAGGTTTGCTGCCCGTAGCCA
248 T-CG-AGAACTCACACCCCC-TTAAAGAGCATT-TGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
2283282 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
309 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
2283347 TAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACATGGATCACATCTACCAAGTTTGGGGCCAA
374 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * * * * * *
2283412 AAATCTTTCTGAAAAGATCTTAAAAAATCTCGAACCGTAAACAGTTTCAAAAATCTTAAAAAATA
439 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATA
*
2283477 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA
504 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
2283542 AGCCATAAAAATGGCATTGGGAC-TCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
569 AGCCATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
2283606 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCAT
633 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * *
2283671 TTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTG
698 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * ** * *
2283736 CGGCAGTAGGATCGACAGCACCCAGTGGGGGACCAGGTCGATTCCCT-GCTTGCACATCCCACCC
763 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA-TCCCTGGCTTGCGCATCCCGCCC
* * *
2283800 TTCTGGCCGGCTGAGCGCCCGCACACTCG-TTCTGGGGGTTGACTTAGGCATACGGAGTTCATTC
827 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTC
*
2283864 CTAGTCTAA
891 CCAGTCTAA
* * * * * *
2283873 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACAGGATCAAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2283938 CT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGAGCA-CAACGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * * *
2284001 ACCTGACCGGCGACATTGGGGTTCCGACGATCAGGGGGG-CTGGGGGGTGTGCGCAGACGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * *
2284065 CGATGGGTGCTGGTACTTTGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2284130 A-CCCCTTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAA
260 ACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2284193 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2284258 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGG-CAGAAACTCCTTCCAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAAATCCTTCCGAAA
* * * *
2284322 AAATTTCT-AAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGT
453 AAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
2284386 CTTGCCATAAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
2284451 GCATTGGCATGGAAAAATATCAAGATGTCCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
2284516 GCGTATCTCGTCTCTCTGGTCGGCGTAGAGCCCGCCCGCCCGCCCG-T--TTT-GTCATTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
2284577 TAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * * * * * * *
2284642 GCAGCACGGAGAGGGGGACCCGATCAAT-CCTCGATTTACGTATCTCGCCCTTCTGACCAGCTGG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* ** * * ** * *
2284706 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGATTACCTGACCGACGGCAT-TGGGGTT
841 GCGCCCGCA----C-GCT--CG------T-TTCGT-GG-GT---TGACTTA-GGCATACGGAGTT
** *
2284770 CCGACGATTGGGCATGTGTTGGCTTAG
886 ----C-ATT-CCCA---G-T--C-TAA
** ** * * * *
2284797 GCATACGGAGTTCATTCTTAGTCTAAGATTAGAACAGACCTTGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC----G-AG-GGT--T--G--CGGCA
** * ** ** * * ** * * *
2284862 GCACATAGAGGGGGACCCGACCGAT-CCCCGACTTACGCATTTCACCCCTCTGGCCGGCTGAGTG
54 GCACAT-G-CTGGG-CTCGGGC-ATGTGCTG-GTGCCGCATTT-----TTCT--TCGTC-G-G-G
* * * ** * ** * * *
2284926 CCTGCACGGTCATTTCGCGGGTTG-ATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
104 ---GCAC---CA--TCGCCGG-AGCA--T---CGT-CGGAGAACCTGACC-GAC--GGCAT-TGG
* * * ****** * * * *
2284990 AGTTCATTC-CCAGACTAAGATCATACCAGATCGAGGGTTGCGGCAGCA-CATG-CCG--GGCAC
150 -GGT--TTCGGC-GA-T-CGGGGGGGCC-G--GGGGGGTTGC-GCA-CATGATGTGCGATGG---
* * * ** *** * * * * *
2285050 GAGCAT-GTGCTGGAGCCACATT-T-TT---CTTC-A-CCGGGGAACCATCGTCGGAGCAACGC-
201 GTGC-TGGTACTTG-GCC-C-TTATATTGGCCCCCTATCC-CTCATCAAACCTC-GAG-AACTCA
*** * ** * * * *** ** * ** *
2285106 CGGAGAACCTGACCGGTGGCA-TTGGGGTTCCGGCGATCGGTGGGGCCGGGAGGGGGTGAG-C-G
259 C--ACCCCCTTA-AAG-AGCATTTGAGATT-TTAC-A--GGT-TTGCTGCCA----GT-AGCCAT
* * * * * *** **
2285168 TACATGATGTGTG--ATGGGTG-CTGGTACTTGTCCCTT-ATATTGG-CCCCCTATCCCTCATCA
310 TA-AAG-TGTCTGAAATGGG-GAC----ACTT-T--TTTCA-AATGGTCACAAAAT--CTTGT-A
* *
2285228 AACTTCGAGTACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
361 CACTTCGAGT--T---------TT---TAGC---TGA-ATTTT-----TTTG-TG-C-AT-GCCA
** ** * * ** * * * *
2285293 TTAAAGCGT-CTGAAATGGGGA-CACTTTTTTCAA--AT--GGTCACAAAAT-CTT--G--TACA
399 ACAAA-AATAC---AA---GGATCACGTCTACCAAGTTTGGGGCCA-AAAATCCTTCCGAAAAAA
* ** * **** * * *** ** *** ** * **
2285347 -CTT--CGAGTTTTTAGCTG-AATTTTGTTTTGCATGCCAACAAAAATACAAGGATTACGTCTAC
456 TTTTAAAAAATCCCGAACCGCAA-AAAGTTTTAAAAATCATGAAAAATAGAA--A--ACGAGT--
* * *** *** *** ** **
2285408 CAAGT-TTGGGGC-TAAAATTACTTC-CAAAAAAATATTAAAAAATCCCGAACCGTAAAAAGTTT
514 C--GTCTT--GCCAT-GAA--ACTTCAC-GTGAAGGCTTAAGGGA--CC--ATTGTATGAA--TT
* ** ** ** * * * * *
2285470 TAAAAATCATGAAAAATAGAAAACGGGTCGACTCGCCATTAAACTTCATG-TGAAG-GCTTAAGG
565 TACAAGCCAT-AAAAAT-G-GCATTGG-C-A--CG-TA-GAAA--T-ATGAAGATGTGCCTAA--
** ** *** ** * * *** * **
2285533 GA-CCATTTTATGAATTTA-CAAGCCATAAAAATGGCATTG-GCA-CGCAG-AAATAT-G-AAG-
616 -ACCCA-CCTACCACCCTATC--G--AT--CCACGGC-TTGCGCATC-CCGTCTCTCTGGCCGGC
* ** * * ** ** * ** ** * * ** **
2285590 AT-GTGCCTAAACTCACCTACCAAC-C-TATCGATC-AATGGCTTTTGCATCCCGTCTCTC-TGG
671 GTAGTGCC--CGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGT-TCATTC
* * * * * * * * *
2285650 CC-GGCGT-AG-TGCCCGCCCGCCCGCCCGTTCGCTCGTTTCGTCAGTTTTCTTAGGCATACAG-
732 CCAGTC-TAAGAT--CGGACCG---GACCG--AG--GGTTGCGGCAG----C--AGG-AT-CGGC
* * ** * * ** **** * * * * * * *
2285711 AGTTCATTCCCAATCTAAGATCGGATCGGACTAAGGGTTGCGATAGTAGGATCGACAGCACATAG
779 AG--CA--CGC-A---GAG-GGGGACCCGACCGATCCCTG-GCTTG-CGCATC--CCGCCCCT--
** * * * * * * * * * *
2285776 AGGGGGACACGG-TCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCTCACG
829 --CTGG-C-CGGCT-GA---GC-GC--CCGCA---CGCTCGTTTCG-TGGGT-TG-A--CTTA-G
* * * * ***
2285840 TTCGTTTCGTGGGTTGACATAGGGATATGGAGTTCATTCCAAGTCTAA
874 -GC-ATACG-GAGTT--CAT-----T-CCCAG-----------TCTAA
* * *
2285888 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2285953 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * * *
2286018 ACCTGACCGGTGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGAAGGGGGTGAGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGG--GGGGGT-TGCGCACATGATG
* *
2286083 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGTACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2286148 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2286213 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
2286278 TT-TGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* *
2286342 AAAATATTAAAAAATCCCGAACTGCAAAAAG--TT-----T--TG-AAAAT-----ACTG-GTCG
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC-GAGTCG
* *
2286391 TTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
2286456 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2286521 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCTCGCTTGTCCACCCGCTTGTTTCGTCAGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-C--GCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * * * *
2286586 AGGCTTAGGCATACAGAGTTCATTTGCTA-TCTAAGATTGGACCGGATCGATGGTTGTGGTAGTA
707 TGGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * ** ** ** * *
2286650 GGATCAGCAGCACGTAGAGTTGGACTGGGTCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
2286715 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTGTAG
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2286779 GCATATGGAGTTCATTCCCTGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2286844 CTCGAGCATGTGCTGGTACCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * * ** *
2286909 ACCTGACCGACGAAATTAGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * *
2286973 CGATGGGAGCTGGTACTTTGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2287038 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTG-CTGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2287102 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *** *
2287167 TGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAAGGATTTCTGAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAAA-TCCTTCCGAAA
* * ** *
2287232 AAATTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
2287297 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
2287362 CATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTA
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
2287427 CGCATCCTATCTCTCTGGCCGGCGTAATGCCCACACGCTCGCCCGTCCC-CTCATTTCATCGGTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCG-CCCGCTCGTTTCGTCGGTT
* * * * * * *
2287491 AGCTTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCAAGGGTTGCGGTAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * *
2287556 ATTGGCAGCACGTAGAGGGGGACCCGATCTAT-CCTAGGCTTGCGCATCCCGCCCCTCTGTCTGG
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * **
2287620 CTAAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** * *
2287683 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTCACGAAAGTA-GTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2287746 CTCGGGCATGTGCTAGG-GCTGCATTTCTCTTCGTCGGGGCACCAT--------CA-C--CGGAG
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
2287799 AACCTAACCGACGGCATTGGGGTTTCGACAATCGGGTGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGT
* * * * * * *
2287863 GTGATGGTTGCTGGTAGTTGGCCCATAGATTTGCCCTCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2287928 CACCCCCTTAAAGAGCATTTG-GAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2287992 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
2288057 TATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATGCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * *
2288122 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAG-CTGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC-GT
2288186 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2288251 CCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * **
2288316 GCGCATCCCGTCTCTCTAGTCGGTGTAGT----GCCCGTCCGCCCGCTCATTTCGTTAGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * *
2288377 TAGGCATACAGAGTTCATTCACAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCAGCAAGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
2288442 GTAGCACGCAGAGGTGGACCCGACCAATCCTTGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAC
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
2288507 CGCCCGTACGCTCG-TT--T-AG-TG-----GG-AT---GA---C-TT---AG-----
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2288539 GCATACGGAGTTCATT-CCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2288603 -TCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGACCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
2288667 ACCTGACCGACGGCATTGGGATTTCAGTGATCGGGGTGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * *
2288731 TGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTGA-CCCTCATCAAGCCTCGAGAAGTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCA
*
2288795 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2288860 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2288924 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-TTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
2288988 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2289053 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *** *
2289118 ATTGGAAAACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
2289183 GCATCCTGTGTCTCTGGCAGGCATAGTGCCCGCCCGCCCACCCGCCTGTTCGTTTTGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C---TCGTTTCGTCGGTTGG
* ** * ** *
2289248 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGGTCAGACTAAGGGTTGCGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
*
2289313 CGGCAAGCACGCATGAGGGGGACCACG-CCGATCCCATGGCTTGCGCATGCCCACCCCTCTGGCC
775 CGGC-AGCACGCA-GAGGGGGACC-CGACCGATCCC-TGGCTTGCGCAT-CCCGCCCCTCTGGCC
* * * * *
2289377 GGCTGGAGCACCCCGCACGTTCGTTTTTGTGGG-TGACTTAGGCAAACGGAGTTTATTCCCAGTC
835 GGCT-GAGC-GCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
2289441 TAA
897 TAA
* * * *
2289444 GCATAC-GAGTT-AATCCCAGTCTAAGATGGGACCGGACCAAGGG-TGCGGCAAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC-AGCACATGCTGG
* * * * * * * *
2289506 GCTCAGGCATGTGCTGGTGTCGTA-TTTTCTTC-AC-TGG------CGGC-TACCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
2289561 AACCTGGACCGACGGACATTGGGG-TTCTGACGATCCGGGGGG-CGGGGGGTGTT-CGCACATGA
130 AACCT-GACCGACGG-CATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGG-GTTGCGCACATGA
* *
2289623 TGTGCGATGGGTGCTGGTACTTGGCTC-TATATTGG-CCCCT-TCCCTCATTAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
2289685 TAACACCCCC-TAAAGAGCATTGGATGATTTTTACA-GTGTTGCTGTCAAGTAGCTATTAAAGTG
256 TCACACCCCCTTAAAGAGCATTTGA-GA-TTTTACAGGT-TTGCTG-CCAGTAGCCATTAAAGTG
* * * * *
2289748 TCT-TAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCCGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * *** *
2289812 TGTTTTTT-TGCATGCCAAAAAAAATACAAGAATCATGTCTACGAAGGTTATAGCCAAAACTCCT
382 T-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* *
2289876 TCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
446 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
* * * *
2289941 AGTCATCTTGCCATTAAACTTCACGTGAAGGCTGAAGGGGCCATTGTATGAATTTACAAGCCATA
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
2290006 AAAATAGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
576 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
2290071 CGGCTTGCGCATACCATCTCTATGGCCGGTGTAATGCTCGCCCGCCCGCCCGTCTTCTCGTTTCG
641 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCG
** * ** * * ** *
2290136 TTAGTTGGCTTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGT
702 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * * *
2290201 AGTAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCCCGCCCCTCTG
767 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTG
* * * * *
2290266 GCCGGTTGAGAGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
832 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
2290331 TAA
897 TAA
* * * * * * *
2290334 GCTTACGAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCACATACTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2290399 CTCGGGCATCTGCTGGTGCTGAATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
2290464 ACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGTGTT-CGCACGTGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGG-GTTGCGCACATGATGTG
2290526 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-C-C
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2290589 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2290654 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * * *
2290719 -TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCTTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * *
2290783 AATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC-AGGTAGTC
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA-GTCGTC
* * *
2290847 TTTCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2290912 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2290977 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
2291042 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATTGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
2291107 CAGCACGTAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCTCGCCCCTCTAGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
2291172 GCCTGCACGCTCGTTTC-------G---T-GG-AT-C-GA---C-TT---AG-----
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2291203 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2291268 CTGGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-AGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
2291332 ACCTGACTGGCGGCATTGGGGTTTCGGTGATCGAGGGGGCC-GGGGGGTGTGCGCATATAATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGTG
* * * * * *
2291396 CGATGGGCGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTTATCAAACCTCGAGAAATAAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
2291461 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
2291526 GGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGAAGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
2291591 TGCATGCCAACAAAAATACAAGGATCACGTCT
390 TGCATGCCAACAAAAATACAAGGATCACGTCT
2291623 CTCTGGCCGG
Statistics
Matches: 16141, Mismatches: 2546, Indels: 1469
0.80 0.13 0.07
Matches are distributed among these distances:
855 2 0.00
856 73 0.00
857 17 0.00
861 2 0.00
864 4 0.00
865 209 0.01
866 56 0.00
867 233 0.01
868 37 0.00
869 127 0.01
870 68 0.00
871 7 0.00
872 146 0.01
873 68 0.00
874 10 0.00
875 15 0.00
876 16 0.00
877 106 0.01
878 5 0.00
879 13 0.00
881 56 0.00
882 266 0.02
883 143 0.01
884 183 0.01
885 1 0.00
886 76 0.00
887 480 0.03
888 788 0.05
889 284 0.02
890 506 0.03
891 748 0.05
892 788 0.05
893 353 0.02
894 358 0.02
895 523 0.03
896 799 0.05
897 841 0.05
898 495 0.03
899 827 0.05
900 210 0.01
901 147 0.01
902 1561 0.10
903 1268 0.08
904 1096 0.07
905 550 0.03
906 309 0.02
907 33 0.00
908 23 0.00
909 7 0.00
910 8 0.00
911 30 0.00
912 63 0.00
913 1 0.00
914 3 0.00
915 1 0.00
916 4 0.00
917 2 0.00
918 3 0.00
919 6 0.00
920 1 0.00
921 1 0.00
922 4 0.00
923 1 0.00
924 35 0.00
925 1 0.00
928 5 0.00
929 3 0.00
930 5 0.00
932 1 0.00
934 4 0.00
936 13 0.00
937 4 0.00
938 11 0.00
939 3 0.00
940 4 0.00
941 10 0.00
942 1 0.00
943 1 0.00
945 2 0.00
946 6 0.00
947 4 0.00
948 6 0.00
949 1 0.00
950 1 0.00
951 3 0.00
952 9 0.00
953 3 0.00
954 12 0.00
955 2 0.00
956 2 0.00
957 12 0.00
958 10 0.00
959 9 0.00
960 14 0.00
961 25 0.00
962 8 0.00
963 2 0.00
965 2 0.00
966 10 0.00
967 5 0.00
968 1 0.00
969 9 0.00
970 11 0.00
971 2 0.00
972 7 0.00
973 4 0.00
974 3 0.00
975 2 0.00
976 21 0.00
977 6 0.00
978 13 0.00
979 22 0.00
980 12 0.00
981 9 0.00
982 6 0.00
983 4 0.00
984 1 0.00
985 3 0.00
986 4 0.00
989 8 0.00
990 8 0.00
991 14 0.00
992 5 0.00
993 7 0.00
994 6 0.00
995 13 0.00
996 14 0.00
997 5 0.00
998 10 0.00
999 4 0.00
1000 5 0.00
1001 3 0.00
1002 7 0.00
1003 2 0.00
1005 3 0.00
1006 5 0.00
1009 5 0.00
1012 5 0.00
1015 3 0.00
1016 5 0.00
1018 2 0.00
1019 21 0.00
1020 1 0.00
1021 7 0.00
1022 4 0.00
1023 15 0.00
1024 155 0.01
1025 177 0.01
1026 132 0.01
1027 96 0.01
1028 93 0.01
1029 80 0.00
1030 153 0.01
1031 138 0.01
1032 144 0.01
1033 96 0.01
1034 103 0.01
1035 88 0.01
1036 105 0.01
1037 84 0.01
1038 114 0.01
1039 130 0.01
1040 572 0.04
1041 160 0.01
1042 96 0.01
1043 74 0.00
1044 59 0.00
1045 33 0.00
1046 55 0.00
1047 67 0.00
1048 593 0.04
1049 234 0.01
1050 35 0.00
1051 58 0.00
1052 64 0.00
1053 129 0.01
1054 106 0.01
1055 88 0.01
1056 96 0.01
1057 45 0.00
1058 102 0.01
1059 33 0.00
1060 49 0.00
1061 104 0.01
1062 216 0.01
1063 60 0.00
1064 30 0.00
1065 32 0.00
1066 30 0.00
1067 43 0.00
1068 38 0.00
1069 84 0.01
1070 36 0.00
1071 8 0.00
1072 24 0.00
1073 14 0.00
1074 14 0.00
1075 36 0.00
1076 51 0.00
1077 45 0.00
1078 18 0.00
1079 36 0.00
1080 29 0.00
1081 23 0.00
1082 6 0.00
1083 9 0.00
1084 5 0.00
1085 25 0.00
1086 12 0.00
1087 15 0.00
1088 6 0.00
1089 10 0.00
1090 15 0.00
1091 46 0.00
1092 15 0.00
1093 4 0.00
1094 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2279415 original size:26 final size:26
Alignment explanation
Indices: 2279379--2279431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2279369 GTTGACTTAG
2279379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2279405 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2279431 G
1 G
2279432 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2280306 original size:26 final size:26
Alignment explanation
Indices: 2280270--2280322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2280260 GTTGACTTAG
*
2280270 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2280296 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2280322 G
1 G
2280323 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2282985 original size:26 final size:27
Alignment explanation
Indices: 2282948--2282998 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
2282938 GGGTTGACTT
2282948 AGCATACGGAGTT-CATTCCCAGTCTA
1 AGCATACGGAGTTCCATTCCCAGTCTA
* *
2282974 AGCATACTGAGTTCCATTCCTAGTC
1 AGCATACGGAGTTCCATTCCCAGTC
2282999 GAAGATGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (27 bp):
AGCATACGGAGTTCCATTCCCAGTCTA
Found at i:2283876 original size:26 final size:26
Alignment explanation
Indices: 2283847--2283899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2283837 GTTGACTTAG
*
2283847 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2283873 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2283899 G
1 G
2283900 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2284985 original size:26 final size:26
Alignment explanation
Indices: 2284956--2285008 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2284946 GTTGATTTAG
*
2284956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2284982 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2285008 G
1 G
2285009 ATCATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:2286900 original size:891 final size:887
Alignment explanation
Indices: 2284787--2291622 Score: 7653
Period size: 891 Copynumber: 7.7 Consensus size: 887
2284777 TTGGGCATGT
* ** ** * ** *
2284787 GTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATTAGAACAGACCTTGGGTTGTGGTAGT
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * * * * ** *
2284852 AGGATCGACAGCACATAGAGGGGGACCCGACCGATCCCCGACTTACGCATTTCACCCCTCTGGCC
66 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
2284917 GGCTGAGTGCCTGCACGGTCATTTCGCGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2284982 GCATACGGAGTTCATTCCCAGACTAAGATCATACCAGATCGAGGGTTGCGGCAGCACATGCCGGG
196 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
2285047 CACGAGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGAACCATCGTCGGAGCAACGCCGGAGA
259 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
2285112 ACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGTGGGGCCGGGAGGGGGTGAGCGTACATGATG
324 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--G-GGGGGTGTGCGCACATGATG
* * * *
2285177 TGTGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGTACTC
386 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2285242 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGCGTCTGAA
451 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2285307 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGT
516 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-T
* * * * *
2285372 TTTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCTAAAATTACTTCCAAAA
580 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * *
2285437 AAATATTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCGAC
645 AAATTTTAAAAAATCCCGAACCGCAAAAAG-TTT----AT-ATGAAAAAT----AACGAGTCGTC
* * * *
2285502 TCGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
700 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
2285567 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCAACCTATCGATCAATGGCTTT
765 CATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTG
*
2285632 TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCCGCCCGTTCGCTCGTTTCGTCA
830 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCG-CC---CGCTCGTTTCGTCA
** * * * * * * *
2285693 GTTTTCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACTAAGGGTTGCGATAGT
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * * * * *
2285758 AGGATCGACAGCACATAGAGGGGGACACGGTCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCC
66 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
2285823 GGCTGAGCACCCTCACGTTCGTTTCGTGGGTTGACATAGGGATATGGAGTTCATTCCAAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2285888 GCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
196 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCACATGCTGGG
*
2285953 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
259 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
2286018 ACCTGACCGGTGGCAATGGGGTTCCGGCGATCGGGGGGGCCGGAAGGGGGTGAGCGCACATGATG
324 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G--GGGGGTGTGCGCACATGATG
* *
2286083 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGTACTC
386 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2286148 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
451 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2286213 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTT
516 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
2286278 TTTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
580 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * *
2286343 AAATATTAAAAAATCCCGAACTGCAAAAAG-TT-T-TG-AAAAT-ACTG-GTCGTTTTGCCATGA
645 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTATATGAAAAATAAC-GAGTCGTCTTGCCATGA
*
2286402 AACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
709 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
2286467 ATAGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
774 ACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
2286532 TCTCTCTGGCCGGCGTAGTGCCTGCTCGCTTGTCCACCCGCTTGTTTCGTCA
839 TCTCTCTGGCCGGCGTAGTGCCCGC-CGC--GCCCGCCCGCTCGTTTCGTCA
* * * * * * * *
2286584 GTAGGCTTAGGCATACAGAGTTCATTTGCTA-TCTAAGATTGGACCGGATCGATGGTTGTGGTAG
1 GTTGGCTTAGGCATACAGAGTTCA-TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAG
* * ** ** * *
2286648 TAGGATCAGCAGCACGTAGAGTTGGACTGGGTCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGC
65 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
2286713 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTGTA
130 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
2286778 GGCATATGGAGTTCATTCCCTGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCACATGCTGG
195 AGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
2286843 GCTCGAGCATGTGCTGGTACCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAG
258 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** * * *
2286908 AACCTGACCGACGAAATTAGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTG
323 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
2286973 CGATGGGAGCTGGTACTTTGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2287038 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTG-CTGTAGCCATTAAAGTGTCTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2287102 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* *** *
2287167 TGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAAGGATTTCTGAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAAA-TCCTTCCGAAA
* * **
2287232 AAATTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
645 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTT-----AT-ATGAAAAAT----AACGAGTCGTC
*
2287297 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
700 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2287362 CATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTA
765 CATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTG
** * * * * *
2287427 CGCATCCTATCTCTCTGGCCGGCGTAATGCCCACACGCTCGCCCGTCCC-CTCATTTCATCG
830 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CG--CGCCCG-CCCGCTCGTTTCGTCA
* * ** * * *
2287488 GTTAGCTTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCAAGGGTTGCGGTAGC
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * ** * *
2287553 AGGATTGGCAGCACGTAGAGGGGGACCCGATCTATCCTAGGCTTGCGCATCCCGCCCCTCTGTCT
66 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * **
2287618 GGCTAAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * *
2287683 GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTCACGAAAGTA-GTGCTGGGC
196 GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGATC-GAGGGTTGCGGCAGCACATGCTGGGC
** * *
2287747 TCGGGCATGTGCTAGG-GCTGCATTTCTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGA
260 TCGGGCATGTGCT-GGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
2287800 ACCTAACCGACGGCATTGGGGTTTCGACAATCGGGTGGGCCGGGGGGTGTGCGCACATGATGTGT
324 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * *
2287865 GATGGTTGCTGGTAGTTGGCCCATAGATTTGCCCTCTATCCCTCATCAAACCTCGAGAACTCACA
389 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2287930 CCCCCTTAAAGAGCATTTG-GAATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
454 CCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2287994 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTA
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * *
2288059 TGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATGCTTCCAAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * *
2288124 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAG-CTGTCT
647 ATTTTAAAAAATCCCGAACCGCAAAAAGTTT-----AT-ATGAAAAAT----AACGAGTC-GTCT
*
2288188 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
701 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
2288253 ATTGGCACGTAAAAATATGAAGATGTGCCTAAAC-CTACCTACCACCCTATCGATCCACGGCTTG
766 ATTGGCACACAGAAATATGAAGATGTGCCTAAACTC-ACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
2288317 CGCATCCCGTCTCTCTAGTCGGTGTAGT----GCC-CGTCCGCCCGCTCATTTCGTTA
830 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCA
* * * * *
2288370 GTTGGCTTAGGCATACAGAGTTCATTCACAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * * * * * ** * *
2288435 AAGATCGGTAGCACGCAGAGGTGGACCCGACCAATCCTTGGCTTGTGCATCCCACCCCTCTGGCC
66 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
2288500 GGCTGACCGCCCGTACGCTCGTTTAGTGGGATGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2288564 G-AT-CGA----A----C---C---G----GA-C--T-GAGGGTTGCGGTAGCACATGCTGGG-T
196 GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGATCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
2288604 CGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGACCATCATCGGAGAAC
261 CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * * * *
2288669 CTGACCGACGGCATTGGGATTTC-AGTGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGTG
326 CTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
2288733 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTGA-CCCTCATCAAGCCTCGAGAAGTCACA
390 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACA
*
2288797 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
454 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2288862 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTGTG
519 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTG
* * *
2288927 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-TTTTCGAAAAAAT
584 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
*
2288991 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
649 TTTAAAAAATCCCGAACCGCAAAAAGTTT-----AT-ATGAAAAAT----AACGAGTCGTCTTGC
*
2289056 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
704 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
2289121 GGAAAACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
769 GGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
2289186 TCCTGTGTCTCTGGCAGGCATAGTGCCCGCC-CGCCCACCCGCCTGTTCGTTTTGTCG
834 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCG-C---TCGTTTCGTCA
** ** * *
2289243 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGGTCAGACTAAGGGTTGCGGTAGC
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * * *
2289308 AGGATCGGCAAGCACGCATGAGGGGGACCACG-CCGATCCCATGGCTTGCGCATGCCCACCCCTC
66 AGGATCGGC-AGCACGTA-GAGGGGGACC-CGATCGATCCC-CGGCTTGCGCAT-CCCGCCCCTC
* * * * *
2289372 TGGCCGGCTGGAGCACCCCGCACGTTCGTTTTTGTGGG-TGACTTAGGCAAACGGAGTTTATTCC
126 TGGCCGGCT-GAGC-GCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** * *
2289436 CAGTCTAAGCATACGAGTT-AATCCCAGTCTAAGATGGGACCGGACCAAGGG-TGCGGCAAGCAC
188 CAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGC-AGCAC
* * * **
2289499 ATACTGGGCTCAGGCATGTGCTGGTGTCGTA-TTTTCTTCA-CTGGCGGCTACCATCGTCGGAG-
251 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GG-GGC-ACCATCGTCGGAGC
* * * * * *
2289561 AAC--CTG-G-ACC-GA-C-G-GACATTGGGGTTCTGACGATCCGGGGGG-CGGGGGGTGTTCGC
313 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* *
2289617 ACATGATGTGCGATGGGTGCTGGTACTTGGCTC-TATATTGG-CCCCT-TCCCTCATTAAACCTC
378 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
2289679 GAGAACTAACACCCCC-TAAAGAGCATTGGATGATTTTTACA-GTGTTGCTGTCAAGTAGCTATT
443 GAGAACTCACACCCCCTTAAAGAGCATTTGA-GA-TTTTACAGGT-TTGCTG-CCAGTAGCCATT
* * *
2289742 AAAGTGTCT-TAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
504 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * * * ***
2289806 CCCGAATGTTTTTTTGCATGCCAAAAAAAATACAAGAATCATGTCTACGAAGGTTATAGCCAAAA
569 GCTGAAT-TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
2289871 CTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGA
633 ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTT----AT-ATGAAAAAT---
* * * *
2289936 AAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTGAAGGGGCCATTGTATGAATTTACAAG
689 -AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
2290001 CCATAAAAATAGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCG
753 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCG
* * * * * *
2290066 ATCCACGGCTTGCGCATACCATCTCTATGGCCGGTGTAATGCTCGCC-CGCCCGCCCGTCTTCTC
818 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCG----CTC
*
2290130 GTTTCGTTA
879 GTTTCGTCA
* * * * * *
2290139 GTTGGCTTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGTAGT
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
* * ** *
2290204 AGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCCCGCCCCTCTGGCC
66 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
2290269 GGTTGAGAGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2290334 GCTTACGAAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCACATACTCGG
196 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
2290399 CTCGGGCATCTGCTGGTGCTGA-ATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAG
259 CTCGGGCATGTGCTGGTGC-CACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
2290463 AACCTAACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGTGTTCGCACGTGATGTG
323 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
2290526 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-C-C
388 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2290589 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTTTGAAAT
453 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2290654 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTTTTT
518 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * * *
2290719 TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCTTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
2290784 ATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC-AGGTAGTCT
647 ATTTTAAAAAATCCCGAACCGCAAAAAG-TTT----AT-ATGAAAAAT----AACGA-GTCGTCT
* * *
2290848 TTCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
701 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2290913 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
766 ATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2290978 GCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCCGTCCGCTCGTTTCGTCG
831 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCA
* * *
2291034 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAA-GGTTGTGGCAG
1 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-AAGGGTTGTGGTAG
* * * *
2291098 CAGGATTGGCAGCACGTAGAGGGGGACCCGA-CTGATCCCCGACTTGCGCATCTCGCCCCTCTAG
65 CAGGATCGGCAGCACGTAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
2291162 CCGGCTGAGCGCCTGCACGCTCGTTTCGTGGATCGACTTAGGCATACAGAGTTCATTCCCAGTCT
129 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
2291227 AAG-AT-CG-G---A----C---C---G----GA-C--T-GAGGGTTACGGTAGCACATGCTGGG
194 AAGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2291268 CTGGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-AGAGA
259 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** * * *
2291332 ACCTGACTGGCGGCATTGGGGTTTCGGTGATCGAGGGGGCCGGGGGGTGTGCGCATATAATGTGC
324 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * *
2291397 GATGGGCGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTTATCAAACCTCGAGAAATAACA
389 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
2291462 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTCTGAAATG
454 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * **
2291527 GGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGAAGAATTTTTTTGT
519 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
2291592 GCATGCCAACAAAAATACAAGGATCACGTCT
583 GCATGCCAACAAAAATACAAGGATCACGTCT
2291623 CTCTGGCCGG
Statistics
Matches: 5131, Mismatches: 651, Indels: 330
0.84 0.11 0.05
Matches are distributed among these distances:
855 2 0.00
856 47 0.01
857 7 0.00
859 1 0.00
860 1 0.00
861 2 0.00
864 2 0.00
865 208 0.04
866 57 0.01
867 235 0.05
868 35 0.01
869 87 0.02
870 77 0.02
871 6 0.00
872 144 0.03
873 69 0.01
874 10 0.00
875 16 0.00
876 13 0.00
877 19 0.00
878 4 0.00
879 34 0.01
880 20 0.00
881 14 0.00
882 172 0.03
884 1 0.00
885 2 0.00
886 6 0.00
887 126 0.02
888 122 0.02
889 41 0.01
890 257 0.05
891 652 0.13
892 225 0.04
893 64 0.01
894 99 0.02
895 263 0.05
896 344 0.07
897 25 0.00
898 24 0.00
899 399 0.08
900 41 0.01
901 21 0.00
902 67 0.01
903 54 0.01
904 358 0.07
905 29 0.01
906 627 0.12
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGTAGC
AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGATCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTATATGAAAAATAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCA
Found at i:2287692 original size:25 final size:26
Alignment explanation
Indices: 2287657--2287708 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2287647 GTTGACTTAG
**
2287657 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2287683 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2287708 G
1 G
2287709 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2292790 original size:26 final size:26
Alignment explanation
Indices: 2292754--2292806 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2292744 GTTGACTTAG
2292754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2292780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2292806 G
1 G
2292807 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2293686 original size:26 final size:26
Alignment explanation
Indices: 2293656--2293708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2293646 ATTGACTTAG
*
2293656 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2293682 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2293708 G
1 G
2293709 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2294169 original size:890 final size:890
Alignment explanation
Indices: 2291618--2297211 Score: 6785
Period size: 890 Copynumber: 6.3 Consensus size: 890
2291608 ACAAGGATCA
* * *
2291618 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGTGCGCCCGCCCGCCCGCTTGTTCTGTCGGTTGGCT
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCG--T-TTC-GTCGGTTGGCT
* * * * ** * * *
2291683 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACTAAGGTTTACGGTAGCAGGATCG
62 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* ** * * * * *
2291748 ACAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGTGCATTCCACCCCTCTGGCCGACTGAG
127 GCAGCACACAGAGGGGGACCCGG-CCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * **
2291813 CGCCCGGACGCTCGTTTCGTGTGTTGACTTAGGGATACGGAGTTCATTCATAGTCTAAGCATACG
191 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *** *** **
2291878 GAGTTCATTCCGAGTCTATGATCGGACCAGAA-CGAAGGTTGCAACAGCACATGCTCCACTCTAG
256 GAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGG
* * ** * *
2291942 TAGGTGCTGGTGCTGCATTTTTCTCCGTCTGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGA
320 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA---TCGGAGAACCTGA
* * * * * *
2292007 TCGGTGGCATTGGGGTTCCCGCGATCGGGTGTGTCGGGGGG-GTGTGCACGGATGATGTGCGATG
374 CCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCAC--ATGATGTGCGATG
*
2292071 GGTGCTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCGAGAACTCCCACCCC
436 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
2292135 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
501 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
2292200 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTCCAT
566 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * ** * *
2292265 GCCAACAAAGATACAAGGATCACGTTTACCAAGTTTGGACCCAAAACT-CTTT-TGAAAAAAATT
631 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTT
* *** * *
2292328 TAAAAAATCTTGAACTATAAAAAGTTTCAAAAT-TTGAGAAAAATAGAAAATGAGTCGTCTTGCC
696 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAATCAT--GAAAAATAGAAAACGAGTCGTCTTGCC
*
2292392 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTG
759 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2292457 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCGT
824 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
2292522 CC
889 CC
* * ** * *
2292524 CATCTCTCTGGCTGATGTAGTGCCCGCCTGCCCGTCCCCCCGCTCGCCTGCTCATTTCGTCGGTT
1 CGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGTCCGCCCG--C-CC-GCTCGTTTCGTCGGTT
* * * * ** *
2292589 GGCTTCGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAGGGTTGCGAAAGCAAG
58 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* ** * * * * * *
2292654 ATCGGCAGCACACAAAAAGGGACCTGGGCATTCCCGACTTGCGCATCCTGCCCCTCTAGCCGACT
123 ATCGGCAGCACACAGAGGGGGACCCGGCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
*
2292719 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
188 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
2292784 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGACGGTTGCGGTAGCACATGCTAGGCTCG
253 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCG
* * *
2292849 GGCATGTGCTGGTGCTACATTTCTCTTCGCCGGGGCACCATCACTAGAGTATCGTCGGAGAACCT
318 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--C------A---TCGGAGAACCT
* *
2292914 GACCGACGGCATTGGGGTTCCGGCCATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
372 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
2292979 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
437 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2293044 TTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGAC
502 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
2293109 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCAT
567 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCAT
* * *
2293173 GCCAAAAAAAATAGAAGGATCATGTCTCCCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTT
631 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTT
* * *
2293237 TAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
696 TAAAAAATCTCGAACCGCAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2293302 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGG
760 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
2293367 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACTGCTTGCGCATC
825 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
2293432 C
890 C
* *
2293433 CGTCTCTCTGGCCAGCATAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
2293498 CATACGGAGTTCATTCCTAGTCTAAGAACATACCAGACCGAGGGTTGCGGCAGCAGGATTGGCAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
2293563 CACACAGAGGGGGACTCGGCCACTCCCCGGCTTGCGCATCCCACCTCTCTGGTCGACTGAGCGCC
131 CACACAGAGGGGGACCCGGCCA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * *
2293628 CACACGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAGT
195 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
2293693 TCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGT
260 TCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGT
* * *
2293758 GCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGACGGCATTGGGGT
325 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * * * *
2293823 TACGGAGATTGAGGGGTCGGGGGGTATGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCT
390 TCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
2293888 TATAATGGCCCCCTATCCCTCATCAAACCTTGA-AACTCACACCCCCTTAAAGAGCTTTTGAGAT
455 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
2293952 TTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATGGTCA
520 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
2294017 CAAAATCTTGTACACTTAGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
585 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * * * *
2294082 TCATGTCTACCAAGTTTGGGGCCAAAAATCCTGT-CGAGAAAATTTTAAAAAGTCTCGAACAGGA
650 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCA
* *
2294146 AAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGC
715 AAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
2294211 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGAACAT--AGAAATATGAAG
779 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAG
*
2294274 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
842 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
2294323 TGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCCCGTTTTGTTGGTTGGCTTAGG
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * * *
2294388 CATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * * * *
2294453 CACACAGAGGGGCACTCGGCCAATCCCCGGCTTTCGTATCTCGCCCCTCTTGCTG-GTGGAGCAC
131 CACACAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT-GAGCGC
*
2294517 CCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG--T--G--TA---AG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
2294573 ---------A-TC----AT---ACCGGACTGAGGGTTGCGGCAGCAAATGCTGGGCTCAGGCATG
259 TTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
* * * * *
2294621 TGCTGGTGCCACATTTTTCTTCACCGGGGCGTTGTCGTTGGAGCATCGTCCGAGAACCTGACCGG
324 TGCTGGTGCCACATTTTTCTT---C--GTCG--G--G--GCACCATCATCGGAGAACCTGACCGG
* * *
2294686 CGGCATTGGGGTTCCGACGATCGAGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGCGCT
378 CGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
2294751 GGTACTCGGCCCTTATACTGGCCCCCTAACCCTTATCAAACCTCGAGAACTCACACCCCCTTAAA
442 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
2294816 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCCACTTT
507 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
2294881 TTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
572 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
2294946 AAAAATACAAGGATCATGTCTAACAAGTTTGGGGCAAAAAAT-CTTTCCGAAAAAATTTTAAAAA
637 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAA
* * *
2295010 ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAAC
702 ATCTCGAACCGCAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * **
2295075 TTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACA
766 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
2295140 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCACATCC
831 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
2295200 CGTATCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGATCGTTTTGCCAGTTGGCTTAGG
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * ** * * *
2295261 CATACGGAGTTCATTCCCAGTCTAAAATGGGACCAGACCGAGGGTTACGATAGAAAGATCGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * *
2295326 GACGCAGAGGGTGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCAACTGAGCGCC
131 CACACAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * *
2295391 CGCACGTTCGTTTCATGGGTTGACTTAGGCACACTGAGTTCATTCCCAGTCTAAGCATACGGAGT
195 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
2295456 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTACGTGCTGGGCTCGGTCATGT
260 TCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGT
** ** * * *
2295521 GCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTAACTGGCGGCATTGGGGT
325 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGT
* *
2295586 TCCGGCGATCGGGGGGGCCAGGGGGTATGTC-CACATGATGTGCGATGGGTGCTGGTACTTGGCC
390 TCCGGCGATC-GGGGGGCCGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * * *
2295650 ATTATATTGGGCCCCTATCCCTCATCAAACCTCGAGCACTCACACCCTCTTAAAGAGCATTTCAG
453 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
2295715 ATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
518 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
2295780 CACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAG
583 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
** * * * * * *
2295844 GATCACGTCTAAAAAGTTTGGGACCCACACTCCTTT-CAAAAAAATTTAAAAAAATCTTGAACCG
648 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCTCGAACCG
2295908 CAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
713 CAAAAAGTTTCAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
2295973 GCGTAATGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
777 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
2296038 ATGT-CACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
842 ATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
2296087 CGTCTCTCTGGCCGACGTAGT----GCCCGT----CCACCCGCTCGTTTTGTCAGTTGGCTTAGG
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
2296144 CATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACTGAGGGTTGCAGCTGTAGGATTGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * * * *
2296209 CACGTAGTGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGCTGACTGAGCACC
131 CACACAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * * * *
2296274 CGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAATTCATTCCTAATCTAAGCATATGGAGT
195 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
2296339 TCATTCCCAATCTAAGATCAGAACCGGACCGAGGGTTACGGTAGTACATCCTGGGCTCGAGCATG
260 TCATTCCCAGTCTAAGATC-GGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
* * * *
2296404 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCCTGACTGGTGGCATTGGGG
324 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGG
* ** *
2296469 TTCTGGCGATCGGGGGGTCCGGGGCGTGTGTGCGCACATGATGTGTAATGGGTGCTGGAACTTGG
389 TTCCGGCGATCGGGGGG-CCGGGG-G-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
** *
2296534 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCGCACCCCCTTAAAGAGCATTTG
451 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
2296599 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGGAATTGGGACACTTTTTTCAAATG
516 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
2296664 GTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCAAGTCAACAAAAATGCA
581 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
2296729 AGCATCACGTCTTCCAAGTTTGGGGCTAAAACT-CATTCCGAAAAAATTTTAAAAGATC-CTGAA
646 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCTC-GAA
* *
2296792 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
710 CCGCAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
2296857 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
774 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* *
2296922 AAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGTGCATCC
839 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
2296974 CGTCTCTCTGGCCGACGTAGTGCCCG-CC-T----------GCTCGTTTCGTCGGTTGGCTTAGG
1 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** * * *
2297027 CATAAGGAGTTCATTACTAGTCTAAGAT-TGAACCAAAATGAGGGTTGTGGCAGCAGGATTGGTA
66 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
2297091 GCACACAGAGGGGGACCCGACCGATCCTCGGCTTGGGCATCCCGCCCCTCTGGTCGGCTGAGCGC
130 GCACACAGAGGGGGACCCGGCC-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
2297156 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2297212 ATCAGACCGG
Statistics
Matches: 4073, Mismatches: 519, Indels: 215
0.85 0.11 0.04
Matches are distributed among these distances:
864 54 0.01
867 3 0.00
869 3 0.00
871 3 0.00
872 1 0.00
873 173 0.04
874 1 0.00
875 50 0.01
876 75 0.02
877 389 0.10
879 2 0.00
881 2 0.00
882 3 0.00
883 383 0.09
884 113 0.03
885 3 0.00
886 185 0.05
887 528 0.13
888 229 0.06
889 19 0.00
890 570 0.14
891 120 0.03
892 6 0.00
894 3 0.00
896 3 0.00
899 55 0.01
900 1 0.00
901 93 0.02
902 186 0.05
903 2 0.00
905 12 0.00
906 20 0.00
907 46 0.01
908 200 0.05
909 429 0.11
910 97 0.02
911 4 0.00
912 2 0.00
913 2 0.00
914 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACACAGAGGGGGACCCGGCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
AAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
Found at i:2296050 original size:887 final size:884
Alignment explanation
Indices: 2291651--2297211 Score: 6384
Period size: 887 Copynumber: 6.2 Consensus size: 884
2291641 CCGCCTGTGC
* * * *
2291651 GCCCGCCCGCCCGCTTGTTCTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * * * * ** * ** *
2291716 AAATCGGACTAAGGTTTACGGTAGCAGGATCGACAGCATGCAGAGGGGGACCCGGTCGATCCCTG
66 GGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
2291781 GCTTGTGCATTCCACCCCTCTGGCCGACTGAGCGCCCGGACGCTCGTTTCGTGTGTTGACTTAGG
131 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * ** * * * * *
2291846 GATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCGAGTCTATGATCGGACCAGAAC
196 CATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* *** * *** * * * **
2291911 GAAGGTTGCAACAGCACATGCTCCACTCTAGTAGGTGCTGGTGCTGCATTTTTCTCCGTCTGGGC
261 GAGGGTTGCGGTAGTACATGCTGGGCTC-GGCATGTGCTGGTGCCACA-TTTT-T-C-T-T---C
** * * * * * *
2291976 ACCATCGCCGAAGCATCGTCGGAGAACCTGA-TCGGTGGCATTGGGGTTCCCGCGATCGGGTGTG
317 A-C--CGGGGCACCATCGTCGGAGAACCTGACT-GGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* * * **
2292040 TC-GGGGGGGTGTGCACGGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-
378 CCAGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2292103 ATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
443 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2292168 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
508 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
2292233 CTTTGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAGATACAAGGATCACGTTTACCAAG
573 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTAACAAG
** * * * * ***
2292298 TTTGGACCCAAAACT-CTTTTGAAAAAAATTTAAAAAATCTTGAACTATAAAAAGTTTCAAAAT-
638 TTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAATC
* *
2292361 TTGAGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
703 AT--GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
2292426 TATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
766 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
2292491 CTACCACCCTATCGATCCACAGCTTGCGCGTCCCATCTCTCTGGCTGATGTAGT
831 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
2292545 GCCCGCCTGCCCGTCCCCCCGCTCGCCTGCTCATTTCGTCGGTTGGCTTCGGCATACGGAGTTCA
1 G--C-CC-GCCCG----CCCGCT---C-G-T--TTT-GTCAGTTGGCTTAGGCATACGGAGTTCA
* * * ** * * * * * **
2292610 TTCCCAGTGTAAGATCAGACCAAACCAAGGGTTGCGAAAGCAA-GATCGGCAGCACACAAAAAGG
50 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAG-AAGGATTGGTAGCACGCAGAGGGG
* ** * * * *
2292674 GACCTGGGC-ATTCCCGACTTGCGCATCCTGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTT
114 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
* *
2292738 TTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
179 TCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * * * *
2292803 TAAGATCGGACCAAACTGACGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACA
244 TAAGATCAGACCGGACCGAGGGTTGCGGTAGTACATGCTGGGCTC-GGCATGTGCTGGTGCCACA
* * * *
2292868 TTTCTCTTCGCCGGGGCACCATCACTAGAGTATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
308 TTTTTCTTCACCGGGG---CA-C-C------ATCGTCGGAGAACCTGACTGGCGGCATTGGGGTT
*
2292933 CCGGCCATC-GGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
362 CCGGCGATCGGGGGGGCCAGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
2292995 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTTGAG
427 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
2293060 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
492 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
2293125 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAAAAAAAATAGAA
557 CACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATAGAA
* ** * * *
2293189 GGATCATGTCTCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG
621 GGATCACGTCTAACAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCG
* *
2293254 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
686 CAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
2293319 GCTTAAAGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
750 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
2293384 ATGTGCCTAAACCCACCTACGACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCC-AG
815 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
*
2293448 CATAGT
879 CGTAGT
* * *
2293454 GCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
1 ----G--C--CCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * ** * * * * *
2293519 CTAAGAACATACCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACTCGGCC
58 CTAAGATCGGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACC
* * * * * *
2293584 -ACTCCCCGGCTTGCGCATCCCACCTCTCTGGTCGACTGAGCGCCCACACGCTCATTTCGTGGAT
123 GA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
2293648 TGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
187 TGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
2293713 GACCGAATCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
252 GACCGGACCGAGGGTTGCGGTAGTACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTT
** * * * * * * * *
2293778 CGTCGGGGCACCATCATCGGAGAACCTGACCGACGGCATTGGGGTTACGGAGAT-TGAGGGGTC-
316 CACCGGGGCACCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCA
* * *
2293841 GGGGG-GTATGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATC
381 GGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
2293905 CCTCATCAAACCTTGA-AACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGATTTGCTGCC
446 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
2293969 AGTAGCCATTAAAGTGTCTGAAATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
511 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
2294034 AGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT
576 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTAACAAGTTT
* * * * *
2294099 GGGGCCAAAAA-TCCTGTCGAGAAAATTTTAAAAAGT-CTCGAACAGGAAAAAGTTTTCAAAATC
641 GGGG-CAAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAG-TTTCAAAATC
* *
2294162 GTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
703 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * **
2294227 TGAATTTACAAGCCATAAAAATGGTATTGGAACATAGAAATATGAAGATGTGCCTAAACCCACCT
768 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
2294292 ACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT
833 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
** *
2294344 GCCCGCCCGCCCGCCCGTCCGCCCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
1 GCCCGCCCGCCCG--C-T-----CGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * ** * * * *
2294409 CTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGAGGGGCACTCGGCC
58 CTAAGATCGGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACC
* * * * * * * *
2294474 AATCCCCGGCTTTCGTATCTCGCCCCTCTTGCTG-GTGGAGCACCCGCACGCTCGTTTC----G-
123 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT-GAGCGCCCGCACGCTCGTTTCGTGGGT
*
2294533 TG-----GG--T--T--G---A----C--T-TAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
187 TGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
2294577 TACCGGACTGAGGGTTGCGGCAGCAAATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTT
252 GACCGGACCGAGGGTTGCGGTAGTACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTT
* * * *
2294642 CACCGGGGCGTTGTCGTTGGAGCATCGTCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
316 CACC--GG-G--G-C-----ACCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGAT
* * * *
2294707 C-GAGGGGCCAGGGGG-GTGTGCGCACATGATGTGCGATGGGCGCTGGTACTCGGCCCTTATACT
370 CGGGGGGGCCAGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
2294770 GGCCCCCTAACCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
435 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
2294835 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCCACTTTTTTCAAATGGTCACAAATT
500 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
2294900 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
565 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGT
* *
2294965 CTAACAAGTTTGGGGCAAAAAAT-CTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
630 CTAACAAGTTTGGGGCAAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG-
* * *
2295029 TTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGG
693 TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
2295094 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACAAAAATATGAAGATGTGCCT
758 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * *
2295159 AAACCCACCTACCACCCCATCGATCCACGGCTTGCACATCCCGTATCTCTGGCCGGCGTAGT
823 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
*
2295221 GCCCGCCCGCCCGCCCGATCGTTTTGCCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCG--C--TCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
2295286 AATGGGACCAGACCGAGGGTTACGATAGAAAGATCGGTAGGACGCAGAGGGTGACCCGACCGATC
62 GATCGGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATC
* * * * *
2295351 CCCGGCTTGTGCATCCTGCCCCTCTGGCCAACTGAGCGCCCGCACGTTCGTTTCATGGGTTGACT
127 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
2295416 TAGGCACACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
192 TAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* **
2295481 GACCGAGGGTTGCGGTAGTACGTGCTGGGCTCGGTCATGTGCTGGTGCCGTATTTTTCTTCACCG
257 GACCGAGGGTTGCGGTAGTACATGCTGGGCTCGG-CATGTGCTGGTGCCACATTTTTCTTCACCG
*
2295546 GGGCACCATCGTCGGAGAACCTAACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGG
321 GGGCACCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGG
* * *
2295611 TATGT-C-CACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGGCCCCTATCCCTCA
386 TGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * * *
2295674 TCAAACCTCGAGCACTCACACCCTCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACTAGTAG
451 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
2295739 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-
516 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
2295803 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACGTCTAAAAAGTTTGGGAC
581 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTAACAAGTTTGGGGC
** * * * *
2295868 CCACACTCCTTTCAAAAAAATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAGTCATGAAAA
646 AAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA-TCATGAAAA
* * *
2295933 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCGTAATGGACCATTATATGAATTT
710 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
2295998 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT-CACTAAACCCACCTACCACC
775 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACC
2296062 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
839 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * *
2296108 GCCCGTCCACCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATC
1 GCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * *
2296173 AGACCGGACTGAGGGTTGCAGCT-GTAGGATTGACAGCACGTAGTGGGGGACCCGACCGATCCCC
66 GGACCAGACTGAGGGTTGC-GATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * *
2296237 GGCTTACGCATCCCGCCCCTCTAGCTGACTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAG
130 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
2296302 GCATACGGAATTCATTCCTAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGAACCGGA
195 GCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA
* * **
2296367 CCGAGGGTTACGGTAGTACATCCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
259 CCGAGGGTTGCGGTAGTACATGCTGGGCTCG-GCATGTGCTGGTGCCACATTTTTCTTCACCGGG
* * * *
2296432 GCACCATCGTCGGAGATCCTGACTGGTGGCATTGGGGTTCTGGCGATCGGGGGGTCC-GGGGCGT
323 GCACCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGG-GT
** *
2296496 GTGTGCGCACATGATGTGTAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
387 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
** *
2296561 CAAACCTTAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
452 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
2296626 CATTAAAGTATCTGGAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
517 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * **
2296691 TTTAGGTGAATTTTTTTGTGCAAGTCAACAAAAAT-GCAAGCATCACGTCTTCCAAGTTTGGGGC
582 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAG-AAGGATCACGTCTAACAAGTTTGGGGC
* * * * *
2296755 TAAAACTCATTCCGAAAAAATTTTAAAAGATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
646 AAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAATCATGAAAA
*
2296820 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
710 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
2296885 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
775 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
2296950 TATCGAACCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT
840 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * * * *
2296995 ----GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTACTAGTCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * * *
2297056 GAACCAAAATGAGGGTTGTGGCAGCAGGATTGGTAGCACACAGAGGGGGACCCGACCGATCCTCG
66 GGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * *
2297121 GCTTGGGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
131 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
2297186 CATA-TGGAGTTCATTCCCAGTCTAAG
196 CATACT-GAGTTCATTCCCAGTCTAAG
2297212 ATCAGACCGG
Statistics
Matches: 4041, Mismatches: 506, Indels: 251
0.84 0.11 0.05
Matches are distributed among these distances:
864 88 0.02
865 1 0.00
866 2 0.00
867 2 0.00
869 1 0.00
870 1 0.00
873 131 0.03
874 2 0.00
875 45 0.01
876 81 0.02
877 395 0.10
878 5 0.00
880 2 0.00
882 12 0.00
883 380 0.09
884 123 0.03
885 6 0.00
886 179 0.04
887 544 0.13
888 219 0.05
889 26 0.01
890 511 0.13
891 125 0.03
892 1 0.00
893 1 0.00
894 2 0.00
896 3 0.00
897 5 0.00
898 12 0.00
899 93 0.02
900 2 0.00
901 85 0.02
902 186 0.05
903 1 0.00
904 2 0.00
905 2 0.00
906 3 0.00
907 54 0.01
908 200 0.05
909 409 0.10
910 86 0.02
911 2 0.00
913 9 0.00
914 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
GCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAGACTGAGGGTTGCGATAGAAGGATTGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTGCGGTAGTACATGCTGGGCTCGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCA
CCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTAACAAGTTTGGGGCAAAAA
CTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
Found at i:2296331 original size:26 final size:26
Alignment explanation
Indices: 2296302--2296354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2296292 GTTGACTTAG
*
2296302 GCATACGGAATTCATTCCTAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
* *
2296328 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
2296354 G
1 G
2296355 ATCAGAACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:2297275 original size:159 final size:159
Alignment explanation
Indices: 2296960--2297371 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 159
2296950 TATCGAACCA
* * * * * * *
2296960 CGGCTTGTGCATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGC-CTGCTCGTTTCGTCGGTTGGCT
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGAGCCCGCAC-GCTCATTTCGTCGGTTGACT
* * * * *
2297023 TAGGCATAAGGAGTTCATTACTAGTCTAAGATTGAACCAAAATGAGGGTTGTGGCAGCAGGATTG
64 TAGGCATAAGGAGTTCATTCCTAGTCTAAGATAGAACCAAAACGAGGGTTGCGGCAGCAGGATCG
* * *
2297088 GTAGCACACAGAGGGGGACCCGACCGATCCT
129 GCAGCACACAGAGGGGGAACCGACCGATCCC
* * * *
2297119 CGGCTTGGGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCATTTCGTCGGTTGACTTA
* * ** *
2297184 GGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGG
66 GGCATAAGGAGTTCATTCCTAGTCTAAGAT-AGAACCAAAACGAGGGTTGCGGCAGCAGGATCGG
** * * * **
2297248 CAGCATGCAGATGGTGAATCGGTCGATCCC
130 CAGCACACAGAGGGGGAACCGACCGATCCC
* * * *
2297278 CGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGAAACTCGCACGCTCATTTCGTCGGTTGACTT
1 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCATTTCGTCGGTTGACTT
*
2297343 AGGCATACGGAGTTCATTCCTAGTCTAAG
65 AGGCATAAGGAGTTCATTCCTAGTCTAAG
2297372 CATATGGAGT
Statistics
Matches: 210, Mismatches: 39, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
159 154 0.73
160 56 0.27
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCATTTCGTCGGTTGACTTA
GGCATAAGGAGTTCATTCCTAGTCTAAGATAGAACCAAAACGAGGGTTGCGGCAGCAGGATCGGC
AGCACACAGAGGGGGAACCGACCGATCCC
Found at i:2297381 original size:26 final size:26
Alignment explanation
Indices: 2297345--2297397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2297335 GTTGACTTAG
*
2297345 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2297371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2297397 G
1 G
2297398 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2298760 original size:717 final size:713
Alignment explanation
Indices: 2297371--2298850 Score: 2153
Period size: 717 Copynumber: 2.1 Consensus size: 713
2297361 CCTAGTCTAA
* * * *
2297371 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCAGCAGCAAATGCTGGG
* *
2297436 CTCGGCCAAGTGCTGGTGCCACATTTTTCCTCGCCCGGGCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGCCAAGTGCTGGTGCCACATTTTTCCTCGCCCGGGCACCATCGTCAGAGCATCACCGAAGA
* *
2297501 ACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGGTCTGT
130 ACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGATCTGC
* ** *
2297566 GATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTCAAA
*
2297631 CCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2297696 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTGT
325 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCTTGT
* * **
2297761 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGAGGCCAAAACGCCTTCCGAAAAAA
** *
2297826 TTTTAAAAAATCCTAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCTAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
* * *
2297891 CCATGAAACTTCACGTGAATGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAACGGCAT
520 CCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAACGGCAT
** * *
2297956 TGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGC
585 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGC
* * * *
2298021 ATCCCGTCTCTTTGGTCGACGTAGTGCCCGTC-GCCCGGTCGCCCGCTCATTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CC---CGCCCGCTAATTTCGTCGGTTGGCT
2298085 TAG
711 TAG
**
2298088 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTGGCAAATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCAGCAGCAAATGCTGGG
* * * * ** * *
2298153 CTTGGGCATGTGCTGGTGCCGCATTTTTTTTCG-TCGAGGCACCATCGTCATAGCATCACCGAAG
65 CTCGGCCAAGTGCTGGTGCCACATTTTTCCTCGCCCG-GGCACCATCGTCAGAGCATCACCGAAG
* * * * * *
2298217 AACCTGATCGGCTGCATT-GTGGTTTCGGTGATCGGGGGG-GCCGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCAGCATTAG-GGTTCCGGCGATCGGGGGGCG-AGGGGGGTGTGCGCACATGATC
2298280 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTC
* *
2298345 AAAGCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2298410 ATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCT
322 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCT
* * * * *
2298475 TGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGATTGATGCCAGAACGCCTTTCGAAC
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGAGGCCAAAACGCCTTCCGAAA
* * *
2298540 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCT-AAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
* * * *
2298604 CTTGCCATTAAACTTCACGTGAAGGCCTAATGGACCATTGTATGAATTTACAAGCCAT-AAAAAT
516 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGCATGAATTTACAAGCC-TCAAAAAC
* * *
2298668 GGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACTTACCACACTATCGATCCACGGCT
580 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCT
*
2298733 TGGGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTAATTTCGTCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTAATTTCGTCGGTTGGC
2298798 TTAG
710 TTAG
* * *
2298802 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGC
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGC
2298851 GATAGCAGGA
Statistics
Matches: 682, Mismatches: 74, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
713 1 0.00
714 71 0.10
716 6 0.01
717 602 0.88
718 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCAGCAGCAAATGCTGGGC
TCGGCCAAGTGCTGGTGCCACATTTTTCCTCGCCCGGGCACCATCGTCAGAGCATCACCGAAGAA
CCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGCGAGGGGGGTGTGCGCACATGATCTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAAGAGAACTCAAAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCCTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGAGGCCAAAACGCCTTCCGAAAAAAT
TTTAAAAAATCCTAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCCTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAACGGCATT
GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTAATTTCGTCGGTTGGCTTAG
Found at i:2298991 original size:26 final size:26
Alignment explanation
Indices: 2298961--2299013 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2298951 GTTGACTTAG
*
2298961 GCATATAGAGTTCA-TTCACAGTCTAA
1 GCATACAGAGTTCATTTC-CAGTCTAA
*
2298987 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
2299013 G
1 G
2299014 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:2299952 original size:886 final size:883
Alignment explanation
Indices: 2298252--2299955 Score: 2574
Period size: 886 Copynumber: 1.9 Consensus size: 883
2298242 CGGTGATCGG
*
2298252 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
2298317 CCTATCCCTCATCAAACCAAGAGAACTCAAAGCCCCTTAAAGGGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCAAGAGAACTCAAACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTT
* **
2298382 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGT
*
2298447 ACACTTCGAGTTTTTAGCTAAATTTCCTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACC
196 ACACTTCGAGTTTTTAGCTAAATTTCCTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
2298512 AAGATTGATGCCAGAACGCCTTTCGAACAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
261 AAGATTGAGGCCAAAAAGCCTTTCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
2298577 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCCTAATGGACCAT
326 AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCAT
* * *
2298642 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCC
391 TGTAAGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGCCTAAACCC
* * * * *
2298707 ACTTACCACACTATCGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG
456 ACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAATGCCCGCCCG
* * *
2298772 CCCGCCCGCTAATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
521 CCCGCCCGCTAATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC
* * * *
2298837 GAACCAAGGGTTGCGATAGCAGGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTG
586 GAACCAAGGGTTACGACAGCAGGATTGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTG
* * ** * * *
2298902 CGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAT
651 CCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCACTTCATGGATCGACTTAGGCATAC
*
2298967 AGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGCTCGAGGG
716 AGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGCTCGAGGG
*
2299032 TTGCGACAGGACATACTGGGCTCGGGCATGTGCTGGTGTCGGGGCACCATCGTCGGAGCATCGTC
781 TTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGTCGGGGCACCATCGTCGGAGCATCGTC
2299097 AGAGAACCTGACCGACGACATTGGGGTTCCGACGATCA
846 AGAGAACCTGACCGACGACATTGGGGTTCCGACGATCA
*
2299135 GGGGGCCGGGGGGGTGAGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCC-GGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** *
2299200 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCAAGAGAACTCAAACCCCCTCAAAGAGCATTTGAGATTTTACAGGTT
* * *
2299265 TGCTGCCAGTAGCTACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATTGTCATAAAATCTTG
130 TGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTG
* ** * * *
2299330 TACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-AAAAATACAAGTATCATGTCTAC
195 TACACTTCGAGTTTTTAGCTAAATTTCCTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
2299394 CAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAA
260 CAAGATTGAGGCCAAAAAGCCTTTCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
2299459 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
325 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCA
*
2299524 TTGTAAGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGATGATGTGCCTAAACC
390 TTGTAAGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGCCTAAACC
* *
2299589 CACCTACCACCCTATCGATCCATGGCTTGCGCAT-CCGTCTCTCTGGGCAG-CGTAATGCCCGCC
455 CACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCAGACGTAATGCCCGCC
* *
2299652 CGCCCGCCCACCTGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAAT
519 CGCCCG--C-CC-GCTAATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAAT
* * ** * *
2299717 TAGACCGGACGGAGGGTTAC-AGCAGCAGGATTGACAGCATGTAGAGGGGGACCCGGCCAATCCC
580 CAGACCGAACCAAGGGTTACGA-CAGCAGGATTGACAGCATGCAGAGGGGGACCCGACCAATCCC
* * *
2299781 TGGCTTGCCCATCCCGCCCCTCTGGCTGGCTGAGCGCCCTCACGCTCACTTCATGGATCGACTTA
644 CGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCACTTCATGGATCGACTTA
* * **
2299846 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-TGAAGATCAGACTGG
709 GGCATACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAG
* *
2299910 AC-CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
773 -CTCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTG
2299956 CCGCATTTTT
Statistics
Matches: 733, Mismatches: 79, Indels: 15
0.89 0.10 0.02
Matches are distributed among these distances:
882 27 0.04
883 239 0.33
884 210 0.29
885 4 0.01
886 252 0.34
887 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GGGGGCCGGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCAAGAGAACTCAAACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTAAATTTCCTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGATTGAGGCCAAAAAGCCTTTCGAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCAT
TGTAAGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAATGCCCGCCCG
CCCGCCCGCTAATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACC
GAACCAAGGGTTACGACAGCAGGATTGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTG
CCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCACTTCATGGATCGACTTAGGCATAC
AGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGCTCGAGGG
TTGCGACAGCACATACTGGGCTCGGGCATGTGCTGGTGTCGGGGCACCATCGTCGGAGCATCGTC
AGAGAACCTGACCGACGACATTGGGGTTCCGACGATCA
Found at i:2302185 original size:616 final size:617
Alignment explanation
Indices: 2300996--2302193 Score: 1857
Period size: 616 Copynumber: 1.9 Consensus size: 617
2300986 AGTCTGGTCT
* **
2300996 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGGC
1 GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGGC
* *
2301061 GGGCACTACGTCGGCCAGAGAGACAGGATGCACAAGCCGTAAATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAAAGAGACAGGATGCACAACCCGTAAATCGATAGGGTGGTAGGTGGGTT
*
2301126 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
2301191 CCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACGACACGTTTTCTATTTTTCACAATTTTTAG
196 CCCTTAAGCCTTCACAAGAAGTTTCATGGCAAAACAACACGTTTTCTATTTTTCACAATTTTCAA
* * * *
2301256 AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGATGGTGTTTTGGCCCCAAACCTGGTAG
261 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACCTGGTAG
* *
2301321 ACATGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACCCGAAGTGTATAAG
326 ACATGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACCCAAAGTGTACAAG
*
2301386 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACC
* * * *
2301451 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGACC
* *
2301516 AATATATGGGCCAAGTACCAGCACACATCGCACATCATCTACGCACACCCCCCC-GCCCCTCCAA
521 AATATAAGGGCCAAGTACCAGCACACATCACACATCATCTACGCACACCCCCCCAGCCCCTCCAA
2301580 TTGTCGAAACCCTAATGCTGTCAGTCCGATCC
586 TTGTCGAAACCCTAATGCTGTCAGTCCGATCC
** * *
2301612 GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATTGACGAAATGAGCAGGTGGGCGGGC
1 GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGGC
* * * **
2301677 GGGCACTACGTTGGCCAAAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGTCGGCCAAAGAGACAGGATGCACAACCCGTAAATCGATAGGGTGGTAGGTGGGTT
*
2301742 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* ** * *
2301807 CCCTTAAGCTTTCACGTGAAGTTTCATGGCAAAACAACTCGTTTTCTATTTTTCACGATTTTCAA
196 CCCTTAAGCCTTCACAAGAAGTTTCATGGCAAAACAACACGTTTTCTATTTTTCACAATTTTCAA
** **
2301872 AACTTTTTGGGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGG-CCCAAACCTGGTAG
261 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACCTGGTAG
** *
2301936 ACATGATCCTTGTATTTTT-TTGGGTGTGCACA-AAAACATTCAGCTAAAAACTCAAAGTGTACA
326 ACATGATCCTTGTATTTTTGTT-GGCATGCACAGAAAA-ATTCAGCTAAAAACCCAAAGTGTACA
*
2301999 AGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGCTACTGGTAGCAA
389 AGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAA
2302063 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
* * * * * *
2302128 ACCAATATAAGGGCCAAGTACCATCACCCATTACACATCTTGTGCGCACACCCCCCCCAGCCCCT
518 ACCAATATAAGGGCCAAGTACCAGCACACATCACACATCATCTACGCACA-CCCCCCCAGCCCCT
2302193 C
582 C
2302194 GATCACCGGA
Statistics
Matches: 525, Mismatches: 52, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
614 6 0.01
615 225 0.43
616 287 0.55
617 7 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (617 bp):
GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGGC
GGGCACTACGTCGGCCAAAGAGACAGGATGCACAACCCGTAAATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACAAGAAGTTTCATGGCAAAACAACACGTTTTCTATTTTTCACAATTTTCAA
AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACCTGGTAG
ACATGATCCTTGTATTTTTGTTGGCATGCACAGAAAAATTCAGCTAAAAACCCAAAGTGTACAAG
ATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGACC
AATATAAGGGCCAAGTACCAGCACACATCACACATCATCTACGCACACCCCCCCAGCCCCTCCAA
TTGTCGAAACCCTAATGCTGTCAGTCCGATCC
Found at i:2304558 original size:26 final size:26
Alignment explanation
Indices: 2304529--2304581 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2304519 CCGGTTCGAT
2304529 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
2304555 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2304581 C
1 C
2304582 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2305013 original size:24 final size:26
Alignment explanation
Indices: 2304962--2305016 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
2304952 AATTTTTCAC
**
2304962 GATTTTTTAAAATTTTTACGGTTCAG
1 GATTTTTTAAAATTTTTACGGTAAAG
*
2304988 GATTTTTTAAAATTTTTTC-G-AAAG
1 GATTTTTTAAAATTTTTACGGTAAAG
2305012 GATTT
1 GATTT
2305017 CTTGGCCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.27
25 1 0.04
26 18 0.69
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (26 bp):
GATTTTTTAAAATTTTTACGGTAAAG
Found at i:2305456 original size:26 final size:26
Alignment explanation
Indices: 2305427--2305476 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2305417 CCGGTTCAAT
2305427 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
2305453 CTTAGACTGGGAATGATCTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
2305477 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:2306159 original size:26 final size:26
Alignment explanation
Indices: 2306123--2306175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2306113 CTGGTCTGAT
2306123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
2306149 CTTAGATTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2306175 C
1 C
2306176 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2307725 original size:26 final size:26
Alignment explanation
Indices: 2307675--2307727 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2307665 CCGGTCTGAT
* *
2307675 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATAAACACCGTATG
* *
2307701 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACACCGTATG
2307727 C
1 C
2307728 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACACCGTATG
Found at i:2307879 original size:654 final size:653
Alignment explanation
Indices: 2306625--2307908 Score: 1809
Period size: 654 Copynumber: 2.0 Consensus size: 653
2306615 TCCCAAACTT
* *
2306625 GGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
1 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
2306690 ATGAGATTTTGTGACCATTTGAACAAAGTATCACCATTTCAGACACTTTAATGGCTACTGGCAGC
66 ATAAGATTTTGTCACCATTTGAACAAAGTATCACCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
2306755 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGACAGG
131 AAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGG
*
2306820 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCGGTCCCCC
196 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCC
* * * * *
2306885 CGATCGTTGGAACCCCAACACCGCTGGTCAGGTTCTCCGACGATGCTCCGACGACGGTGCCCCGA
261 CGATCATCGGAACCCCAACACCACCGGTCAGGTTCTCCAACGATGCTCCGACGACGGTGCCCCGA
* * * **
2306950 TGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCGGCCGTAACCCTCGGTCCAA
326 TGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCGGCCACAACCCTCGGTCCAA
* * *
2307015 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGT
391 TCCAATCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGT
* * * * *
2307080 CAATCGACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGAT
456 CAACCCACGAAACGAGCGTGCCGACGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGAT
* * * * *
2307145 CAGCCGGGTCCCTCTCTATGTGCTGCCGATCCTGCTACCATAGCCCTCGGTCTGGTCTGATCTTA
521 CAGCCGGGTCCCTCTCTACGTGCTGCCGATCCTGCTACCATAGCCCTCGATCCGATCCGATCTTA
* * *
2307210 GACTAGGATTGAACTCCATATGCCTAAGCCAACTGACGAAACGAGTCGACAAGCGTGCAAAAAAT
586 GACTAGGAATGAACTCCATAAGCCTAAGCCAACCGACGAAACGAGTCGACAAGCGTGCAAAAAAT
2307275 CTC
651 CTC
2307278 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGT
1 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
2307342 ATAAGATTTTGTCACCATTTGAGA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 ATAAGATTTTGTCACCATTTGA-ACAAAGTATCACCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
2307406 CAAACCTATAAAATCTCAAATGCTCTTTGAGAGGGTGTGAGTTCTTGAGGTTTGATGGGGGACAG
130 CAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGACA-
**
2307471 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGCGCACACCCCTCCCGG-C
194 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGTC
** *
2307535 CCCCCTGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGC
257 CCCCC-GATCATCGGAACCCCAACACCACCGGTCAGGTTCTCCAACGATGCTCCGACGACGGTGC
** * * *
2307600 CCC-AGTGAAGAAAAATATGG-TTCAACACATGCCCGATCCCAGCATGTGCTGCCACAACCCTTG
321 CCCGA-TGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCGGCCACAACCCTCG
** ** * *
2307663 GTCCGGTCTGATCTTAGATTGGGAATGAACACCGTATGCTTAGACTGGGAATAAACTCTGTATGC
385 GTCCAATCCAATCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATAAACTCCGTATGC
*
2307728 CTAAGTCAACCCATGAAACGAGCGTGCCGACGCTCAGCCGGCCAGAGGGGC-AGGATGCGA-AAG
450 CTAAGTCAACCCACGAAACGAGCGTGCCGACGCTCAGCCGGCCAGAGGGGCGA-GATGC-ACAAG
* * * *
2307791 CTGAGGATC-GACCGTGTCCC-CTTCTGCGTGCTGCCGATCCTGCTATCGCA-A-CCTTTC-ATC
513 CCGAGGATCAG-CCGGGTCCCTC-TCTACGTGCTGCCGATCCTGCTA-C-CATAGCC-CTCGATC
* *
2307851 CGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAG
573 CGATCCGATCTTAGACTAGGAATGAACTCCATAAGCCTAAGCCAACCGACGAAACGAG
2307909 CAGGCGGGCG
Statistics
Matches: 556, Mismatches: 62, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
652 145 0.26
653 87 0.16
654 244 0.44
655 78 0.14
656 2 0.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (653 bp):
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ATAAGATTTTGTCACCATTTGAACAAAGTATCACCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCC
CGATCATCGGAACCCCAACACCACCGGTCAGGTTCTCCAACGATGCTCCGACGACGGTGCCCCGA
TGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCGGCCACAACCCTCGGTCCAA
TCCAATCTTAGACTGGGAATGAACACCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCCGACGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCGAGGAT
CAGCCGGGTCCCTCTCTACGTGCTGCCGATCCTGCTACCATAGCCCTCGATCCGATCCGATCTTA
GACTAGGAATGAACTCCATAAGCCTAAGCCAACCGACGAAACGAGTCGACAAGCGTGCAAAAAAT
CTC
Found at i:2308597 original size:26 final size:26
Alignment explanation
Indices: 2308568--2308619 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2308558 TCTGGTCCAA
*
2308568 TCTTAGACTATGAATGAACTCCATAT
1 TCTTAGACTAGGAATGAACTCCATAT
*
2308594 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTAGGAATGAACTCCATAT
2308620 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCATAT
Found at i:2310260 original size:26 final size:26
Alignment explanation
Indices: 2310221--2310273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2310211 CTAGTCCGAT
* *
2310221 CTTAGACTGTGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
2310247 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2310273 C
1 C
2310274 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2311608 original size:870 final size:868
Alignment explanation
Indices: 2309915--2315489 Score: 5849
Period size: 907 Copynumber: 6.3 Consensus size: 868
2309905 NNNNNNNNNN
* *
2309915 TGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
2309980 ATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATTAGGGATAGGAGGCCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * * **
2310045 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAAACCCCCCTGCCTCCTGATCGTTGGA
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
* * * *
2310110 ACCCCAATGCTGTCGATCAGGTTCT-C----TG--G-CGA---TGCTCTGGCGAAGAAAAATGCG
196 ACCCCAATGCCGTCGATCAGGTTCTCCGTGATGTCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * *
2310164 GCACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACT
261 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA--------C--G-CC--TC----ACT
* * *
2310229 GTGAATGAACTCCCTATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACG
309 GTGAA-G--------A--CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
2310294 AGCGTGCGGGTGCCCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGTCGGGTGCCT
363 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCGGGTCCCC
* * * *
2310358 CTCTGTGTGTTGCCGATCCTACTATCGCAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAA
428 CTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
* ** *
2310423 -TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGTGGGTAGGCACTACGTCGGCCAGAG
493 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGGGGGCGGGCACTACGCCGGCCAGAG
*
2310487 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTC
558 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
2310552 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGTGAA
623 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* ** *
2310617 GTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACAACTTTTAAAACTTTTTATGGTTC-AGGA
688 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGA-GA
*
2310681 TTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
752 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* *
2310746 TTTGGCATGCACAAAAAAATTCAGCTGAAAACTCGATGTGTACAAGATTTTG
817 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
2310798 TGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
2310863 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGTGCCCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
2310928 AGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGATCGTCGG
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGG
* *
2310993 AACCCAAATGCCGTCGATCAGGTTCTCCGGTGATGGTCCGGCGATGGTGCCCCGACGAAGAAAAA
195 AACCCCAATGCCGTCGATCAGGTTCTCC-GTGAT-GT-CGACGATGGTGCCCCGACGAAGAAAAA
2311058 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAAC-CCTC-C-GT-AAG-CTTAGA
257 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACGCCTCACTGTGAAGACTTAGA
** * * * *
2311118 TTGGGAATGAACTCCGTATGCCTAAGTCAACTAATGAAACGAGCCTGCGAGCACTCAGCCGGCCA
322 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * *
2311183 GAGGGGCAGGATGCGCAAGTCGGGGATCGA-ACGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTA
387 GAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA
* * * * * * *
2311247 TCACAACCCTCAGTCTGTTTTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAGCCGAT
452 TCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
2311312 GAAACGAGCGGGCGTGCGGGCAGGCGGGCACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGT
517 GAAACGAGCGGACG-G-GGG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
2311377 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTT
578 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
2311442 ATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTC
643 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
2311507 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAA
708 GTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
2311572 GGGGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
773 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
2311637 CAACTAAAAACTCGAAATGTACAAGATTTTG
838 CAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
2311668 TGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
2311733 ATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
2311798 AGGGCCAAGTACCAGCACTCATTGCACATCATGTGCGCAAACCCCCCTGCCCCTCGATCGCCGGA
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
* *
2311863 ACCCCAATGCTGTCGATCAGGTTCT-C------T-GACGA---TGCTCCGACGAAGAAAAATGCG
196 ACCCCAATGCCGTCGATCAGGTTCTCCGTGATGTCGACGATGGTGCCCCGACGAAGAAAAATGCG
* *
2311917 GCACTAG--CATG-CC-AG-CCAGCATGTGCTGCC-CAATCGGTCGTTGTCTGCAACAATGAACT
261 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA-C-G-C-----CT----C-----ACT
* * * * *
2311976 GTGAATGAACTCGATTTTGACTGGGAATGAAAACT-CGTCTATGCCTCAGT-AACTCACGATACG
309 GTGAA-G-A--C---TTAGATTGGGAATG--AACTCCG--TATGCCTAAGTCAACCCACGAAACG
* * ** * * * *
2312039 AGCGTACGGGACGATCAGCAAGCCA-AAGAG-GGGATG-GTAAG-CGAGGAT--A-TCGAGTGTC
363 AGCGTGCGGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCG-G-GTC
* ** ** * * * *
2312097 CCAGCTCCT-AATGCTATCGATCCTGCT-T---AAACCTCGGTCTGGTC--AACCT-GACTGGGA
425 CC-CCT-CTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
* * *
2312154 ATG-ACTCCGTA--CCT-AGAC-A-CGTAC-CAA--A-C--A----GGGGC-GGTA-TA-G-C-G
488 ATGAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGCGGACGGGGGGGCGGGCACTACGCCGG
* *
2312198 -CAAAGA-ACAGGAATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACA--TTC
552 CCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
2312257 ATATTTAC--CTAGTGCCAATG--AATTTTAAGGCTTGTAAATTCATACAGTGGTCCCTTAAGCC
616 ATATTT-CTGC-A-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
2312318 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
678 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAT
* * * * * *
2312383 AGTTTGGGATTTTTTAAAATCTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
743 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
* * *
2312448 TGTATTTTTGTTGGCATGCAAAAAAACAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTG
808 TGTATTTTTTTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
2312510 TGACCA-TTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
2312573 ATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
2312638 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATCGCCGGA
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
* * * * * **
2312703 ACCCCAACGCCATCGGTCAGGTTTTTCGATGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAAT
196 ACCCCAATGCCGTCGATCAGGTTCTCCG-TGATG-TC-GACGATGGTGCCCCGACGAAGAAAAAT
* * * **
2312768 ACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCATAACCCTCGGTCTGGTCCGATCTTAG
258 GCGGCACCAGCACATGCCCGAGCCCAGCA--TG-TG-C-T-A-CCAC-AAC--G-CC--TC----
* *
2312833 ACTGGGAATGAACTTCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
306 ACTGTGAA-G-AC-T--TA-GATT-G----GGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
2312898 ACGAGCGTGCTGGCGCTCAGCCGACCAGAGGGGCGGGATGTGCAAGTCGGGTAT-TAGCCAGGTC
360 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCGGGTC
* * * * *
2312962 CCTCTCTGTGTGTTACCGATCCTGCTATCGCAACCCTCAGTCTGGTCAGATCTTAGACTGGGAAT
425 CCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAT
* * * * * **
2313027 GAA-TCTGTATACCTAAGCCAACCGATGAAACGAGCAGACGGGTGGGCGGGCACTACGTTGGCCA
490 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGGGGGCGGGCACTACGCCGGCCA
* * *
2313091 GAGAGACGGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATAT
555 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
2313156 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCTTTAAGCCTTCACGT
620 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
2313221 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTAAAACTTTTTACGGTTCGG
685 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGA
2313286 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TT
750 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
2313350 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGATGTGTACAAGATTTTG
815 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
2313404 TGACCATTTGAAAAAAGTGTCCCCAATTCAAAAATTTTAATGGCTACTGGCAGCAAACCTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
2313469 ATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGTGGGCCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
2313534 AGGGCCAAGTACCAGCACCCATCGCCCATCATGTGCGCACACCCCCCGGCCCCCCGGTCGTCAGA
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
* * * * **
2313599 ACCCCAATGCCGCCGGTCAGGTTCT-C-------CGACGATGGTGCCCCGACGGACAAAAATATG
196 ACCCCAATGCCGTCGATCAGGTTCTCCGTGATGTCGACGATGGTGCCCCGACGAAGAAAAATGCG
** * **
2313656 GCACCAGCACATGCCCGAGCCCAGTTTGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACT
261 GCACCAGCACATGCCCGAGCCCAG--CATG-TG-C-T-A-CCAC--AAC-G-CC--TC----ACT
* * * * *
2313721 GGGAATGAACTCCATATGCTTAGATTGAGAATGAACTCCATGTGCCTAAGTTAACCCACGAAACG
309 --G--TG-A----AGA--CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
2313786 AGCGTGTGGGTGCTCAACTGGCCAGAGGGGCGGGATGCACAAGTCAGGGATC-AGTCGGGT-CAC
363 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCGGGTCCCC
* * * ** * *
2313849 C-CT-C-TGCTACCGATCTTGCT-GCTGCAACCCTCAGTAC-AATCTAATCTTAAACTGGGAATG
428 CTCTGCGTGCTGCCGATCCTGCTATC-GCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATG
* * * *
2313909 AACTCCGTATGCCTAAGCCGACTGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAG
491 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGGGGGCGGGCACTACGCCGGCCAG
** * *
2313974 AGAGACGGGATAAGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATT
556 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
2314039 TATACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTG
621 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * ** *
2314104 AAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTCAAAACTTTTTGGGGTTCGGG
686 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGAG
* * *
2314169 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTCTATTTT
751 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTT
*
2314234 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
816 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
2314287 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
2314352 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGACCAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
2314417 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCACCCCGATCGCCAG
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGG
* * * ** * *
2314482 AACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGGTGGAGACAAA
195 AACCCCAATGCCGTCGATCAGGTTCTCC-GTGATG-T-CGACGATGGTGCCCCGACGAAGAAAAA
* * * * * ** * *
2314547 TGTGGCACCGGTATATGCTCGAGCCCAGCATGTGCTGTCGCAACCCCCGGTCTGATCCGATTTTA
257 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAA-CGCC--TC--A--C-----T-
* * *
2314612 GACTGGGAGGGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
309 G--T------GAA----G-A--CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * **
2314677 AACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGAATGCGCAAGCCAAGGATCGA-TCGGGT
359 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAGTCGGGT
* * * * ** * *
2314741 CCCCCTTTCCGTGCTGCCAATCCTGCTACCGCAACCCTTGGTCTGGTCTAATCTTAGACTGGAAA
424 CCCCCTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAA
* * * *
2314806 TGAACTCTGTATGCCTATGCCAACCGACGAAACAAGTGGACGGGCGGGTAGGCGGGCAGGCACTA
489 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GG-GGG--GGC--G--GGCACTA
*
2314871 CGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
546 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
2314936 TCTTCATATTTTTGCATGCCAATCCCATTTTTAAGGCTTGTAAATTCATACAATGTTCCCTTAAG
611 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * *
2315001 CCTTCACGTGAAGTTTCGTGGCAAGAAGACTCGTTTTTTATTTTTCATAATTTTTGAAACTTTTT
676 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
* **
2315066 ATGGTTC-AGGATTTTTTAAAATTTTTTGGGAAGGA-TTATTGGCCATAAACTTGGTAGACATGA
741 ATGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT-TTGGCCCCAAACTTGGTAGACATGA
* * *
2315129 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTG
804 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
2315194 GGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACTTGTAAA
1 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
2315259 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCTAATATA
66 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
2315324 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGG
131 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGG
*** * * * *
2315389 AACCCCAATGCTACCGATCAGGTTCTTCGACGATGCTCCAACGATGGTGCCCCGACAAAGAAAAA
195 AACCCCAATGCCGTCGATCAGGTTCTCCG-TGATG-T-CGACGATGGTGCCCCGACGAAGAAAAA
*
2315454 TGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
257 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
2315490 GTCGCAACCC
Statistics
Matches: 3989, Mismatches: 480, Indels: 422
0.82 0.10 0.09
Matches are distributed among these distances:
840 182 0.05
841 196 0.05
842 47 0.01
843 9 0.00
844 9 0.00
845 28 0.01
846 15 0.00
847 1 0.00
848 1 0.00
849 5 0.00
850 17 0.00
851 10 0.00
852 5 0.00
853 5 0.00
854 26 0.01
855 27 0.01
856 6 0.00
857 1 0.00
858 10 0.00
859 8 0.00
860 14 0.00
861 23 0.01
862 30 0.01
863 13 0.00
864 27 0.01
865 164 0.04
866 39 0.01
867 7 0.00
868 25 0.01
869 39 0.01
870 484 0.12
871 28 0.01
872 4 0.00
873 3 0.00
874 15 0.00
875 6 0.00
876 6 0.00
877 14 0.00
878 35 0.01
879 11 0.00
880 25 0.01
881 67 0.02
882 288 0.07
883 381 0.10
884 85 0.02
885 172 0.04
886 8 0.00
887 4 0.00
888 3 0.00
889 5 0.00
890 10 0.00
891 19 0.00
892 29 0.01
893 12 0.00
894 51 0.01
895 184 0.05
896 351 0.09
897 1 0.00
898 57 0.01
899 74 0.02
900 3 0.00
901 2 0.00
903 3 0.00
905 1 0.00
906 9 0.00
907 550 0.14
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (868 bp):
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
ACCCCAATGCCGTCGATCAGGTTCTCCGTGATGTCGACGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACGCCTCACTGTGAAGACTTAGATTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGTCGGGGATCGAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATCGC
AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGACGGGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTG
Found at i:2312879 original size:26 final size:26
Alignment explanation
Indices: 2312828--2312880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2312818 CTGGTCCGAT
* *
2312828 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2312854 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2312880 C
1 C
2312881 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2314638 original size:26 final size:26
Alignment explanation
Indices: 2314609--2314660 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2314599 TGATCCGATT
* *
2314609 TTAGACTGGGAGGGAACTCCGTATGC
1 TTAGACTAGGAAGGAACTCCGTATGC
*
2314635 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAAGGAACTCCGTATGC
2314661 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAAGGAACTCCGTATGC
Found at i:2315073 original size:26 final size:26
Alignment explanation
Indices: 2315035--2315091 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
2315025 GAAGACTCGT
** * *
2315035 TTTTTATTTTTCATAATTTTTGAAAC
1 TTTTTATGGTTCAGAATTTTTGAAAA
* *
2315061 TTTTTATGGTTCAGGATTTTTTAAAA
1 TTTTTATGGTTCAGAATTTTTGAAAA
2315087 TTTTT
1 TTTTT
2315092 TGGGAAGGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.61
Consensus pattern (26 bp):
TTTTTATGGTTCAGAATTTTTGAAAA
Found at i:2315551 original size:26 final size:26
Alignment explanation
Indices: 2315515--2315567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2315505 CTGGTCCGAT
2315515 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
2315541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
2315567 C
1 C
2315568 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:2317236 original size:26 final size:26
Alignment explanation
Indices: 2317207--2317259 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2317197 CCGGTCTGAT
2317207 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
2317233 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
2317259 C
1 C
2317260 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:2318137 original size:26 final size:26
Alignment explanation
Indices: 2318101--2318152 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2318091 TCGGTCTGAT
* *
2318101 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
2318127 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
2318153 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:2319499 original size:905 final size:901
Alignment explanation
Indices: 2315688--2322444 Score: 8690
Period size: 905 Copynumber: 7.6 Consensus size: 901
2315678 CAACACTCGA
*
2315688 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
2315753 TATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * **
2315818 CGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCA-TGATTTTTGAAACTTTTTTAAGG
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAAC-TTTTTGCGG
* * * *
2315882 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGTGCGCCAAACTTGGTATACATTATCCTT
194 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGATCCTT
* * * * * *
2315946 GTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAATTAGAAGTCTACAAGATTTTGTGAGC
258 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
2316011 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCTGTAAAATCTC
323 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
2316076 AAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
388 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * * * *
2316141 CAAGTACCAGCACCTGTCGCACATCATGTGCTCACACCCCCCACAGG--CCCTCGATCGTCGAAA
453 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CTGGCCCCCCCGATCGTCGGAA
* ** * * *
2316204 CCCTAATGCCATCGGTCAGGTTCTCCGATGATGCTCTGGCGATTGTGCCCCGACGAAGAAAAATG
516 CCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * *
2316269 CGGCACCAGCACATTCTCGAGCCCAGCATGTGTTGCCACAA-CC-C--T-C-G---G----T---
581 CGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* *
2316318 CT--G---G---TCC-AATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAA
646 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
2316373 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGCCAGGTACC
711 CGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCG-GGATCGGCCGGGTCCC
* * * * * ** *
2316438 CCTCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGATCAAATCTTAGACTGTGAATGA
775 CCTCTGCGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGA
* ** * * *
2316503 ACTCCGTATGCCTAAGGCAACTAACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCCGG
839 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGG
* *
2316567 CCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
2316632 TATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
2316697 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCGAAACTTCTTGTGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTT
* * *
2316762 TGGGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
196 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
2316827 TTTGTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
261 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
2316892 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTTCTGGCAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
2316957 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
2317022 GTACCAGCACCAATCACACATCATGTGCGCACACCCCCCCCGGCCACCCCGATCGTCGGAACCCC
456 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCTGGCCCCCCCGATCGTCGGAACCCC
* * * * * *
2317087 AATGCCACCGATCAGGTTCTCCGACGATGCTCTGACGATAGTGCCCCGACGAAGAAAAATACGGC
520 AATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * * * *
2317152 ACCAACAAATGCGCTAGCCCATCATGTGCTACCGCAACCATCGGTCCGGTCTGATCTTAGACTGG
585 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGG
* * *
2317217 GAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAG
650 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
2317282 CGTGTGGGCGCTCAGCC-AGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGTTCCACCT
715 CGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCCGGGTCCCCCT
* * * * * *
2317346 CTACGTGCTGCAGATCCTGTTGCCACAACCCTCGG-TCTGGTCTGACCTTAGACTGGGAATGAGC
778 CTGCGTGCTTC-GATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAAC
* * * *
2317410 TCTGTATGCCGAAGCCAACCGACG-AA--A---G-GGGCGGGCTGGCGGGCACTACGCCGG
841 TCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGG
* * * * * *
2317464 CCAGAGAGACGAGATTCGCGAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTATGTACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * * *
2317529 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGCAAATTCATGCAATGGTCTCTTAAGCCTTCT
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
2317594 CGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA-TGA-TTTTCACAAC-TTTTACGG
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGA-AACTTTTTGCGG
* * * *
2317656 TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACCTGGTAGACATGATCCTTG
194 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
2317721 TATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCA
259 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * *
2317786 TTTGAAAAAAGTATCCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
2317851 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
2317916 AAGTACCAACACCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCCGATCG-CTGGAATC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTC-GGAACC
* * * *
2317979 CCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCCCGACGAAGAAAAAAGCG
518 CCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
2318044 CCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACT
583 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * * ** *
2318109 GGGAATGAACTCCGTATGCTTAGACTGGGAACGAACTCCATATGGCTAAGTCAACGCGTGAAATG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * * *
2318174 AGCGTGCGGGCGCTCAGCCGGTCAGAGGGGCGAGATGCGCAAGCCAGGGATGGGTCGGGTCACCC
713 AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCCGGGTCCCCC
* * * * * *
2318239 TCTGCATCCTGTCGATCCTTCTGTCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAAC
777 TCTGCGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * *
2318304 TCGGTATGCCTAAGCTAATCGATGAAACGAGCAGGCGGGCAGGTGGGCAGGCACTACGTCGG
841 TCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGCCGG
* * * * *
2318366 TCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGTACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
2318431 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTCCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* ** *
2318496 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTT
* * * *
2318561 TGGGATTTTTCAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTA
196 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* ** *
2318626 TTTTTTTTTTGCATGCACAAAATCACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
261 -TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
2318691 TTGAAAAAAGTGTCCCAATTTGAGACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
2318756 ATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
2318821 AGTACCACCGCCCATCGCACATCATGTGCCCACACCAACCCCTGGCCCCCCCGATCGTAGGAACC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCTGGCCCCCCCGATCGTCGGAACC
* * * *
2318886 CTAATGCCATCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCTGACGAAGAAAAATGTG
518 CCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * *
2318951 GCACCAGCACATGCCCGAGCCAAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACT
583 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
2319016 GGGAATGAACTCCGTATGC-TACACTAGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
2319080 AGCGTGTGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGAATCGACCGGGTTCCCT
713 AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGG-ATCGGCCGGGTCCCCC
* *
2319145 TCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGGTTCGGTCTGATCTTAAACTGGGAATGAAC
777 TCTGCGTGCT-TCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAC
* * * * *
2319210 TCTGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCGGGCGGGCACCACACCGA
841 TCCGTATGCCTAAGCCAACCGATGAAACGAG-CGGCGGGCGGGCGGGCGGGCACTACGCCGG
* *
2319272 CCAGAGAGACGGG-TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** * *
2319336 TATTTCTATGTGCCAATGCCATTTTTGTGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
2319401 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTT
** *
2319466 CAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTA
196 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
2319531 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATT
261 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
2319596 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
2319661 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
2319726 GTACCAGCACCCATCGCACATCATGTGTGCACACCTGCCCCCCGACCCCCCCGATCGTCGGAACC
456 GTACCAGCACCCATCGCACATCATGTGCGCACA-C--CCCCCTGGCCCCCCCGATCGTCGGAACC
* * * *
2319791 TCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCG
518 CCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
** * * * *
2319856 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAAACCTCAGTCCAGTCCGATCTTAGGCT
583 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* *
2319921 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATG
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * **
2319986 AGCATAG-GGGTGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGCCAGGGATCGAACGGGTCCCC
713 AGCGT-GCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCCGGGTCCCC
* * * * * *
2320050 TTCTACGTGCTTCCAATCCTGCTACTGCAACCCTCGGTTCGATCCT-ATCTTAGACTGGGAATGA
776 CTCTGCGTGCTT-CGATCCTGCTGCCGCAACCCTCGGTTCGGT-CTGATCTTAGACTGGGAATGA
* * *
2320114 ACTCCGTATGCCTAAGCCAACCAATGAAACGAGCAGACGGGCGGGCGGGTGGGCGGGCACTACGT
839 ACTCCGTATGCCTAAGCCAACCGATGAAAC--G-AG-C-GGCGGGCGGGCGGGCGGGCACTACGC
2320179 CGG
899 CGG
* * *
2320182 CCAGAGAGATGGGTTGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* ** *
2320247 TATTTCTGCATTTCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
2320312 CGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACGTTTTGCGAT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGGT
* * * * * * * *
2320376 TTGGGATTTTTTAAAATTGTTTCAGAAGGAGTTTTGGCCCCAATCCTAGAAGATGTGATCCTTGT
195 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
2320441 ATTTTTTTTGGCATGCACAAAAAATTTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
260 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
2320506 TTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAATCTCA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCA
*
2320570 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
2320635 AAGTACCAGCACCAATCGCACATCATGTGCGAACACCCCCCTGGCCCCCCCGATCGTCGGAACCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCC
* * * *
2320700 CAATGCCGTCGGTCAGGTTCTCCAGCGATGCTTCGACAATGGTGCCCCGACGAAGAAAAATGCGG
519 CAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
** *
2320765 CACCAGCACATGCTCGAGCCCAGCATGTGCTGTTGGAACCCT---T---G---G----T---CT-
584 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
2320813 ---A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
649 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * ** * *
2320869 GCGTGCGGGCGCTCACCCTG-CCAGAGGGGCGGGATGCACAAGTTGGGGATCGGTCAGGTCCCCC
714 GCGTGCGGGCGCTCAGCC-GACCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGCCGGGTCCCCC
* * * ** * ** * *
2320933 AT-TGCAT-ATTGCCGATCCTGATGTTGCAACCCT-TGACCTGGTCTGATCTAAGATTGGGAATG
777 -TCTGCGTGCTT--CGATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATG
*
2320995 AACTCCGTATGCCTAAGCGAACCGATGAAACGA---GCGGGCGGGC-GGC---CACTACGCCGG
838 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGG
* * * *
2321052 CCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGCACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
2321117 TATTTCTACATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
2321182 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTGCGGT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGGT
* * * *
2321246 TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGTCCCCAAAATTGGTAGACGTGATGCTTGT
195 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
2321311 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGTTTTTGTGACCAT
260 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
2321376 TTGAAAAAAGTATCCCCATTTCAGACAGTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
2321441 ATGCTCTTCGAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
390 ATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
2321505 AAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCGACCCCCCCCGATTGCCGGAACC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTG-GCCCCCCCGATCGTCGGAACC
* * ** ** ** * *
2321570 CCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCTTGGTGAAAAAAAATGCA
518 CCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * *
2321635 GTACCAGCAGATGCTCGAGCCCAGCATGTGCTGCTGCAACCATCGATCCGGTCTGATCTTAGACT
583 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* ** *
2321700 GGGAATAAACTCCGTACACTTAGACTGGGAATGAACTCCGTATAG-CTAAGTCAACCCACTAAAC
648 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGTCAACCCACGAAAC
* * * *
2321764 GAGCGCGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCAGAGATCGGCCGGGTCCCC
712 GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG-CCGGGATCGGCCGGGTCCCC
* * *
2321829 CTCTACGAG-TTGCTGATCCTGTTGCCGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATG
776 CTCTGCGTGCTT-C-GATCCTGCTGCCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATG
* * * *
2321892 AACTCTGTATGCCTAAGCCAACCGATG-AA--A--------TGGGCGAGCGGGCACTATGCCGG
838 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGG
* * *
2321945 TCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCA
1 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
2322010 TATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAG----C-
66 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
2322070 C-------TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTT
131 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTT
** * *
2322128 CAAGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
196 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
2322193 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATT
261 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
2322258 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAATCTCAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAA
* *
2322322 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGAGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
2322387 AGTACCAGCACCCATCGCACATGATGTGCGCACA-CCCCCTCGACCCCCCCGATCGTCG
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GGCCCCCCCGATCGTCG
2322445 ACCAGAGAGA
Statistics
Matches: 5150, Mismatches: 605, Indels: 245
0.86 0.10 0.04
Matches are distributed among these distances:
870 456 0.09
871 113 0.02
873 3 0.00
874 10 0.00
877 4 0.00
878 279 0.05
879 280 0.05
880 25 0.00
881 330 0.06
882 160 0.03
883 5 0.00
884 6 0.00
885 1 0.00
887 3 0.00
888 3 0.00
889 5 0.00
890 2 0.00
891 1 0.00
892 3 0.00
893 124 0.02
894 310 0.06
895 11 0.00
896 287 0.06
897 353 0.07
898 3 0.00
899 1 0.00
900 1 0.00
901 1 0.00
902 182 0.04
903 74 0.01
904 424 0.08
905 552 0.11
906 376 0.07
907 164 0.03
908 124 0.02
909 2 0.00
910 40 0.01
911 432 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTT
CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCGGAACCCCA
ATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGATCGGCCGGGTCCCCCTCTG
CGTGCTTCGATCCTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGATGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCCGG
Found at i:2319942 original size:26 final size:26
Alignment explanation
Indices: 2319913--2319963 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2319903 CCAGTCCGAT
*
2319913 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2319939 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2319964 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2321721 original size:26 final size:26
Alignment explanation
Indices: 2321692--2321741 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2321682 CCGGTCTGAT
2321692 CTTAGACTGGGAATAAACTCCGTACA
1 CTTAGACTGGGAATAAACTCCGTACA
*
2321718 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
2321742 TAGCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACA
Found at i:2322903 original size:514 final size:498
Alignment explanation
Indices: 2321946--2322955 Score: 1527
Period size: 514 Copynumber: 2.0 Consensus size: 498
2321936 CTATGCCGGT
* * * *
2321946 CAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCAT
1 CAGAGAGACGGCATGCGCAAGCCGTGCATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTCCAT
* *
2322011 ATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCAT
66 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCAT
* *
2322076 GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAA
131 GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCAAAATTTTTTAA
* * *
2322141 AATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
196 AATTATTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTCGCAT
2322206 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTC
261 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
2322271 CCCATTTCAGACACTTTAATGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
326 CCCATTTCAGACACTTTAACGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
2322336 GGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCA
391 GGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCA
* * *
2322401 TCGCACATGATGTGCGCACACCCCCTCGACCCCCCCGATCGTCGAC
456 TCACACATCATGTGCG--CACCCCC-CGACCCCACCGATCGTCGAC
* * *
2322447 CAGAGAGACGGCATGCGCAAGCCGTGCATCGACCGGGTGGTAGGTGGGTTTAGGCGCATCTTCAT
1 CAGAGAGACGGCATGCGCAAGCCGTGCATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTCCAT
* * *
2322512 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCAC
66 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAG----C-C
* * * *
2322577 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTATGGTTC
126 -------TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTC
* * *
2322642 AAAATTTTTTAAAATTATTTCAGAATACGTTTTGGCCCCAAAC-TGATTAGACCTGATCCTTGTA
184 AAAATTTTTTAAAATTATTTCAGAAGAAGTTTTGGCCCCAAACTTG-GTAGACCTGATCCTTGTA
*
2322706 TTTTTGTTCGCATGCACAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
248 TTTTTGTTCGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCAT
* *
2322771 TTGAAAAAAGTGTCCTCATTTCAGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAA
312 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGCTAGCAAACCTGTAAAATCTCAA
* * *
2322836 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
377 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGAGCCA
* * *
2322901 AGTACTAGCACCCATCACACATCATGTGTGCACCCCCCGGCCCCACCGATCGTCG
442 AGTACCAGCACCCATCACACATCATGTGCGCACCCCCCGACCCCACCGATCGTCG
2322956 GAACCCAAAT
Statistics
Matches: 458, Mismatches: 37, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
501 111 0.24
505 1 0.00
506 1 0.00
511 16 0.03
512 9 0.02
513 131 0.29
514 189 0.41
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (498 bp):
CAGAGAGACGGCATGCGCAAGCCGTGCATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTCCAT
ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCAAAATTTTTTAA
AATTATTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTCGCAT
GCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAACGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCA
TCACACATCATGTGCGCACCCCCCGACCCCACCGATCGTCGAC
Found at i:2323886 original size:26 final size:26
Alignment explanation
Indices: 2323857--2323912 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
2323847 TTGATCCGAT
*
2323857 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2323883 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2323909 CTTA
1 CTTA
2323913 AGCCAACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:2325215 original size:26 final size:26
Alignment explanation
Indices: 2325186--2325236 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2325176 GGTTTGATCC
*
2325186 TAGACTGGGAATGAATTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
2325212 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2325237 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2326640 original size:891 final size:879
Alignment explanation
Indices: 2324858--2327684 Score: 3492
Period size: 891 Copynumber: 3.2 Consensus size: 879
2324848 CACCGAAAAA
*
2324858 GTACAAGA-TTGTGACC-TTTG-AAAAAGTGT-CCCA-TTCA-AAACTTTAAT-GCTACT-GCAG
1 GTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
2324915 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
2324980 GGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGCGTGCACA-CCCCCGGCA
131 GGGGCCAATATAAGGGCCAAGTACCAGCAC-CATCGCACATCATGTGC--GCACACCCCCCCG-A
* *
2325044 CCCCCGATCGTCAGAACCCCAATGCCG-CAGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGC
192 CCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC---GA-----C---GATGGTGC
* * * * ** *
2325108 CCC-GACGAATAAAAATGCGGCACTAGCACATGGCCTAGCCCAGCATGTGCTGTCACAACCCTCG
245 CCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCG
* * * *
2325172 ATCCGGTTTGATCCTAGACTGGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
309 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * *
2325237 CTAAGTCCACCCATGAAATGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCGGGATGCACAAGCT
374 CTAAGTCAACCCA-CAAA-GAGAGTGCAGG--CTCAGC-GGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * * *
2325302 GAGAATCGGTCGGGTCTCACTCTAC-GTGCTACCGATCTTGGTACCGTAACCATC-GATCCGGTC
434 GGGGATCGGTCGGGTC-C-C-CTTCGGTGCTACCGATCCTGCTACCGTAACCCTCTG-TCTGGTC
* * *** *
2325365 TGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGCCAT--GCA
495 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGGGTGGGCG
* * * ** * * *
2325427 GGCTGGCACTACGCCAGCCAGAGAGACGGGATGCATAAGCCATGAACCGATAGGGTGGTAGGTGG
559 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * *
2325492 GTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCAATTTTATGGCTTGCAAATTCTTACAAT
624 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
2325557 AGTCCCTTAAGCCCTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
689 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * *
2325622 TGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGG
754 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
2325687 TAGACATGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
819 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
2325748 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
1 GTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
2325813 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
65 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*** * *
2325878 GGGCATCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGC
130 GGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCC-CGAC
* * * *
2325943 TCCCGATCGCCGGAACCCCAATGCGGTCGGTCAAGTTCTTCGACGATGGTGCCCCAGCGAAGAAA
193 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCAGCGAAGAAA
* * *
2326008 AATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCACCCCTCGGTCTGGTCCGATCT
258 AATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCT
* * * *
2326073 TTGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAATCCGTATGCCTAAGTAAACCCAC
323 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
2326138 AAAACGAGAGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGT-GGG
388 -AAA-GAGAGTGCA-G-GCTCAG-CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG
* * * **
2326202 TCCCCTTCCGTGTGCTATCGATCCTACTATCGTAACCCTCTGTCTGGTCCAATCTTAGACTGGGA
448 TCCCCTT-CG-GTGCTACCGATCCTGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGGGA
*
2326267 ATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGGGTGGGTGGGCGGGCGGGCACTACGT
511 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGG-GGGTGGGCGGGCGGGCACTACGT
* *
2326332 CGGCTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
573 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
2326397 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCTTTAAGCCT
638 TCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
2326462 TCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCG
703 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* *
2326527 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCGAACTTGGTAGACGTGATCCTT
768 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
2326592 GTATTTTTGTTGGCATGCAAAAAAAAATTAAGCTAAAAACTCGAAGT
833 GTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
*
2326639 GTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAACTGTAATGGCTACTGGCA
1 GTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC-ACTTTAATGGCTACTGGCA
*
2326704 GCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
65 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
2326768 GGGGGCCAATATAAGGGCCAAGTACCAG---CA-C-C-CATCATGTGCGCACACCCCCCCGCCCC
130 GGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCCG---A
*
2326827 CCGCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT-GTGCCCGA-CGAAG-
192 CC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCAGCGAAGA
* * * * *
2326889 AAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCAACCGCAACCCTTGGTCCAGTCTGAT
256 AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGAT
* * *
2326954 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCATATGCCTAAGTCAACCC
321 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *
2327019 AC-AA-A-A---CA-----A---G-C----GGGCAGGATGCGTAAGCCGGGGATCGATCGGGTCC
386 ACAAAGAGAGTGCAGGCTCAGCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-C
* * * * *
2327065 CCCTTTGAGTGCTGCTGATCCTGCTACCGTAACCCTCTGTCTGGTTTGATATTAGACTGGGAATG
450 CCCTTCG-GTGCTACCGATCCTGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATG
* * * * *
2327130 AACTCCATATGCCTAAGCCAACTGACGAAAC-AAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
514 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGGGTGGGCGGGCGGGCACTACGTCGGCCA
* * * *
2327194 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAATGTGGGTTCAGGAACATCTTCATAT
579 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
2327259 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGT
644 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
2327324 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTCCGTTTCGG
709 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
* * * **
2327389 GATTTTTTAAAATTTTTTCCGATGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTAACT
774 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*** * * *
2327454 TTGTTAAAATGCATAAAAAAAATTCAGCCAAAAAATCAAAGT
839 TTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGT
* *
2327496 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGACTACTGGCA
1 GTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
2327561 GCAAACCTGTAAAATCTC-AATG-TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGGAT
65 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG-AGGGAT
* * * *
2327624 A-GGGGCCAAT-TATAGGG-CATGTTGCCAGCACCCAATCGCACATC-CGTGTGCACACCCCCCC
129 AGGGGGCCAATATA-AGGGCCAAG-TACCAGCA-CC-ATCGCACATCATGTGCGCACACCCCCCC
2327685 TGATTGCCCG
Statistics
Matches: 1709, Mismatches: 179, Indels: 125
0.85 0.09 0.06
Matches are distributed among these distances:
855 12 0.01
856 324 0.19
857 73 0.04
858 37 0.02
859 27 0.02
860 82 0.05
861 7 0.00
862 1 0.00
863 17 0.01
864 5 0.00
868 1 0.00
875 2 0.00
878 1 0.00
879 1 0.00
881 2 0.00
882 2 0.00
883 140 0.08
884 8 0.00
885 10 0.01
886 89 0.05
887 212 0.12
888 5 0.00
889 3 0.00
890 101 0.06
891 344 0.20
892 8 0.00
893 4 0.00
894 9 0.01
895 6 0.00
896 4 0.00
897 14 0.01
898 45 0.03
899 112 0.07
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
GTACAAGATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCCGACCCC
CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCAGCGAAGAAAAAT
GCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
GAGAGTGCAGGCTCAGCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTC
GGTGCTACCGATCCTGCTACCGTAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGGGGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
Found at i:2327005 original size:26 final size:26
Alignment explanation
Indices: 2326954--2327006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2326944 CCAGTCTGAT
* *
2326954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
2326980 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
2327006 C
1 C
2327007 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:2328617 original size:26 final size:26
Alignment explanation
Indices: 2328567--2328619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2328557 CCAGTTCAAT
*
2328567 CTTAGACTGGGAATGGACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
2328593 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
2328619 C
1 C
2328620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:2331514 original size:899 final size:890
Alignment explanation
Indices: 2329465--2332060 Score: 3524
Period size: 899 Copynumber: 2.9 Consensus size: 890
2329455 CTGGTCCGAT
* * * *
2329465 CTTAGACTGGGAATGAACTTCGGATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * ** * *
2329530 CGGCCAAAGGAGCAGGATGCACAAGCCGGGGATCGATCGGTTCATCTTTTGCGTGCTGCCGATCC
66 CGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
2329595 TACTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATTTGCCTAAGCTAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2329660 CCGACGAAACGAGCGGACGGGCGGGCCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA-GTC
196 CCGACGAAACGAGCGGA-GGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAACCT-
* * * *
2329724 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCC-A--CCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
2329786 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
* * * *
2329851 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGCTTCGCGATTTTTTTAAATTTTTTCAG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * *
2329916 AAGGATTTTTCGCCCCAAACATGGTATATGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAA
454 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
2329981 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGT-CCCATTTCAGA
* * *
2330046 CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGTTGTGACTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
* * * **
2330111 TTGAGGGTTGATGAGGCATAACGGGCAAATATAAGGGCCAAGTATGAGCACCCATCGCACATCAT
648 TTGAGGTTTGATGAGGGATAA-GGG-AAATATAAGGGCTAAGTACCAGCACCCATCGCACATCAT
**
2330176 GTGCGCACACCCCCCGGCCCCTCCGATAATCGGAACCCTAAA-GCCGTCGGTCAGG---T-T--C
711 GTGCGCACACCCCCC-GCCCC-CCGATCGTCGGAACCC-AAATGCCGTCGGTCAGGTTCTCTGGC
* * * * *
2330234 -TC-CGATGATGGTTCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCTGTGCCCAACATGTG
773 ATCTCGACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAACAAGTG
* * *
2330297 CTGTCGTAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTACA
838 CTGTCGTAACCCTCGGTCAGATCCAATCTTAGACTGGGAATGAACTCCGCACA
* * * *
2330350 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
2330415 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGCGTGCTGTCGATCT
66 CGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
2330480 TGCTGCCGCAACCCTTGGTCTGGTTTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
2330545 CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCC-
196 CCGACGAAACGAGC-GGAGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA-CCT
* *
2330609 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTTATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
2330674 TTATGGCTTGTAAATTCACACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
2330739 TCGTTTTCTATTTTTCA-GATTTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAAATTTTTTC
389 TCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTC
*
2330803 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
452 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
2330868 AATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCTCCATTTTA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTC-CCATTTCA
2330933 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAG
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAG
* * * * * *
2330997 TTCTCGAGCTTTGATGAGGGATACAGGGATATTATATGGGCTAAGCACCAGCACCCATCGTACAT
645 TTCTTGAGGTTTGATGAGGGATA-AGGGA-AATATAAGGGCTAAGTACCAGCACCCATCGCACAT
* * * *
2331062 CATGTGCGCACACCCCCTCGCCCCCTGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTCTGG
708 CATGTGCGCACACCCCC-CGCCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCTGG
* * * *
2331127 CAATGCTCTGACGACGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
772 C-AT-CTC-GACGATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAACA
**
2331192 AGTGCT-TCCGTAACCCTCGGTCCA-ATCCAATCTTAGACTGGGAATGAACTCCGCATG
834 AGTGCTGT-CGTAACCCTCGGT-CAGATCCAATCTTAGACTGGGAATGAACTCCGCACA
* * * * * **
2331249 CTTAGACTCGGAATGAACTCCATCTGCCTAAGTCAACCCACGAAACGAGCGCGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
2331314 CGGCCTGAGAAGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
2331379 TGTTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
2331444 CTGATGAACCAAGCGAGAGGGCGGGTGGGCACTACGCCGACCAGAGAGACGGGATGCACAACCTG
196 CCGACGAAACGAGCG-GAGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAACCTG
* *
2331509 TGGATC-A-AGGGTGGTAGCTGCGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
2331572 GATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGATGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * *
2331637 CGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * * * * *
2331702 TGGAGTCTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATATAAAATT
455 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
2331767 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGAC
520 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC-CATTTCAGAC
2331832 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
* *
2331897 TGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGG-TCAAGTACCAGCACCCATCGCACATCAT
649 TGAGGTTTGATGAGGGATAAG-GG-AAATATAAGGGCT-AAGTACCAGCACCCATCGCACATCAT
* * *
2331961 GTGCGCACACCTGCCCAGCCCCCCCGATCGACGGAACCGAAATGCCGTCGGTCAGGTTCTCTGGC
711 GTGCGCACACC--CCCCG-CCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCTGGC
2332026 GATACTCCGACGATGGTGCCCCGACGAAGAAAAAT
773 -AT-CT-CGACGATGGTGCCCCGACGAAGAAAAAT
2332061 ACGGCGTGGA
Statistics
Matches: 1498, Mismatches: 174, Indels: 65
0.86 0.10 0.04
Matches are distributed among these distances:
885 265 0.18
886 3 0.00
887 4 0.00
888 144 0.10
889 256 0.17
890 2 0.00
891 1 0.00
892 1 0.00
894 1 0.00
895 3 0.00
896 252 0.17
897 163 0.11
898 80 0.05
899 321 0.21
900 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCAGAGGAGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGAGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAACCTGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTG
AGGTTTGATGAGGGATAAGGGAAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGCCCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCTGGCATCTCGAC
GATGGTGCCCCGACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAACAAGTGCTGTCGTA
ACCCTCGGTCAGATCCAATCTTAGACTGGGAATGAACTCCGCACA
Found at i:2332992 original size:26 final size:26
Alignment explanation
Indices: 2332953--2333005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2332943 CTGATCTGAT
**
2332953 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2332979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2333005 C
1 C
2333006 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2333407 original size:19 final size:19
Alignment explanation
Indices: 2333383--2333431 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
2333373 CGTTTTTCAT
2333383 TTTTCACGGTTTTCAAAAC
1 TTTTCACGGTTTTCAAAAC
2333402 TTTTCACGGTTTTCAAAAC
1 TTTTCACGGTTTTCAAAAC
*
2333421 TTTTTACGGTT
1 TTTTCACGGTT
2333432 CAAGATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.47
Consensus pattern (19 bp):
TTTTCACGGTTTTCAAAAC
Found at i:2335649 original size:26 final size:26
Alignment explanation
Indices: 2335620--2335671 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2335610 CCGGTCTGAT
*
2335620 CTTAGACTGAGAATG-GCTCCGTATGC
1 CTTAGACTG-GAATGAACTCCGTATGC
*
2335646 CTTAGACTGGGATGAACTCCGTATGC
1 CTTAGACTGGAATGAACTCCGTATGC
2335672 TTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAATGAACTCCGTATGC
Found at i:2338265 original size:903 final size:902
Alignment explanation
Indices: 2334756--2345534 Score: 11160
Period size: 902 Copynumber: 12.0 Consensus size: 902
2334746 CCGGTCCGAT
* *
2334756 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
2334821 CGGCTAGAGGGGCAGGATGCGCAAGCC-AGGGATCGATCGGGTCACCCTCTGTGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
2334885 CTGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCA
130 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
2334950 ACCAACGAAACGAGCAGGTGGGCGGCCGAGCGGGCA-TCACGCCGGCCAGAGAGATGGGATGCGC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
2335014 ATGTCGTGGATC-AAAGGGGTGGTTGGTGAGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
259 AAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *** *
2335078 CCATTTTTATGGCTTGTAAGTTCACGTAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
2335143 GATGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTGCGGATCGAGATTTTTTTAAATTT
388 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * ** *
2335208 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTTTCATG--GA
453 TTTCGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
2335271 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
2335336 TTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
583 TT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
2335401 GAGTTCTCGTGGTTTGGTGAGGGATAAGGGGCCAATATAA-GGCCAAGTACGAAG-ACCCATC-A
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCGC
* * * * *
2335463 ACA-CAATGTG-GCGACA-CCCCCCGG--ACCTCGATCGCCGG-ACCCGCAATGCCGTCAGTCTA
711 ACATC-ATGTGCGC-ACACCCCCCCGGCCCCCCCGATCGTCGGAACCC-CAATGCCGCCGGTC-A
* * ** * * * * *
2335522 GGTTTTCTGGGATTCTCCGGC-ATGGTG-CCCGATGAA-AAAAAT--GGATACCAGCA-ATGCCA
772 GGTTCTCCGACATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGG-CACCAGCACATGCCC
* * * * * * * *
2335581 GA-CCGAG-TTGTGCTGCCGTAAACCTCTGTCCGGTCTGATCTTAGACTGAGAATG-GCTCCGTA
836 GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
2335643 TG
901 TG
* *
2335645 CCTTAGACTGGG-ATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
2335709 TCGGCCAAAGGGGTGGGATGCGTAAGCCGAGGATCGATTGGGTCCCCCTCTACGTGCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
2335774 TTGCTGCCACCACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
130 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
2335839 ACCGATGAAACAAGCGAGCAGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGCATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
2335904 AGCCGTGGATCAATAGGGTCATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
2335969 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
2336034 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGGGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
2336099 TCGGAA-GAAGTTTTGGCCCAAAACATGGTAGATGTGATGCC-TGTATTTTTGCTAGCATGCACA
455 TCGGAAGGAA-TTTTTGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACA
*
2336162 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-
* * *
2336227 TTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGT
582 TTTAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
2336292 GAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
2336357 CATCATGTGTGCACACCACCCGCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGT
712 CATCATGTGCGCACACC-CCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * *
2336422 TCTCCGGCGATGCTCCGTCGATGGTGCCCTGACGAAGAAAAATATGCCACCAGCACATGCCTGAG
775 TCTCCGAC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* **
2336487 CCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-
839 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
2336525 CTTAGACTGGGAGA-GAACTCCGTATGCCTAAATCAACCCACGAAATGAGGGTGCGGGCGCTCAA
1 CTTAGACTGGGA-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
2336589 CCGGCTAAAGGGGCGGGATGCGTAAGCC-AGGGATCGGTCGGGTCACCCTCTGTGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * * *
2336653 CCTACTGTCACAACACTTGGTCCGGTATGATCTTAGACCGGGAATGAACTCCGTATACCTAAGCC
129 CTTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
2336718 AACCAACGAAACGAGCGGG-TGGC---CGGGCGGGCA-TCACACCGGCCAGAGAGACGGGATGCG
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACT-ACGCCGGCCAGAGAGACGGGATGCG
* * * * *
2336778 CATGCCATGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * * * *
2336843 CCATTTTTATGGCTTGTAAATTCACACAATGGACCCTTAAGCCTCCACGTGAAGTTTAATGGGAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
2336908 GACGACTCGTTTTCTACTTTTCATGATTTTCAAAACCTTTTACGATTCGAGATTTTTTACAATTT
388 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * ** * *
2336973 TTTCGAAAGG-ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTCACGGA-
453 TTTCGGAAGGAATTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
2337036 AAAAAAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
2337101 TTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTTTTTAAGGGGGTG
582 TTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
2337166 TCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
2337231 ACATCATGTTCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGCCGATCAGGTT
711 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
2337296 TTTCGACGATGCTTCGGCGATGGTG-CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
776 CTCCGAC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * ** * *
2337360 CCAGCTTGTGCTATCGTAAACCTTTGTCCGGTCTGATCTTGGACTGGGAATGAACTCCGTATG
840 CCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
2337423 CTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
2337488 CTGCCAGAGGGGTGGGATACGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* *
2337553 TGCTGCCACAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2337618 CCGATGAAACGAGCGGGCGGACGGGCGGGAGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** *
2337683 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTGTATTTCTGCATTCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
2337748 TTTTTACGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
2337813 GACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
391 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
2337878 CGGAAGGAATTTTTGCCCAAAACATGGTAGATGTGATCCCTGTATTTTTGCTGGCATGCACAAAA
456 CGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
2337943 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTCT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-T
*
2338008 AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2338073 TTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
2338138 CATGTGTGCACACCCCCCCAGG-CCCCCCAATCGTCGGATCCCCAATGCCGCCGATCAGGTTCTC
715 CATGTGCGCACACCCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * ** **
2338202 CGACATGCTTAGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
779 CGACATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * ** * *
2338267 CATGTGCTGTCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCATTTG
844 CATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
2338326 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACTCACGAAACGAACGTGCGCGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * *
2338391 CAACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGAGTCCCCATCTACATGCTGCCGAT-T
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * *
2338455 CTGCTGCCACAACCCTCGATCCAGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 -TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * **
2338520 ACCGAGGAAACGAACGGGCGAGCAGGC----TGGCACTACGTCAGCCAGAGAGAC-GGATGCATA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
2338580 TGCCGTGGATCAATAGAGTGGTAGGTGGCTTTAGGCACATCCTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
2338645 ATTTTTACGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * **
2338710 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACTGTTCGGGATTTTTTTTAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
2338775 TTGCAAGGAGTTTTCGCCCC-AACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
2338839 AAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
2338904 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGA
585 AA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
2338969 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACACAAGGGCCAAGTACCACCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
2339034 TTATGTGCGCACACCCCCCCAGCCCCCCTGATCGCCGGAACCCAAATGCCACCGGTCAGGTTCTC
714 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** ** * *
2339099 CGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG--CAT----GTG--CA
779 C-GACATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
2339156 GC-----C-G-C--AACCCTCGATCCGGTCCGATCTTAGACT-GG---G-A------ATG
843 GCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
2339196 ---A-AC------TG-----CGTATGCCTAAGTCAACCCACGAAATGAGTGTAC-GGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
2339245 CGGCCAGAGAGGCGAGATACGCAAGACG-GAGATCAGCCGGGGCCTCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * ** * * * *
2339309 CTGCCACCGCAACCCTCAGTTTGATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCA
130 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
2339374 ACCGATAAAACGAGCGGGCGGGTGGGC----GGGCTCTACGCCTGCCAGAGAGACGTGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*** *
2339435 AGCCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCAAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
2339499 ATTTTTATGGCTTGTAAATTCATACAA-GAGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCATG
325 ATTTTTATGGCTTGTAAATTCATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
2339563 ACGATTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
389 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
2339628 TTCGGAAGGAGTTTTGGCCCTCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACA
454 TTCGGAAGGAATTTTTGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
2339693 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
2339758 TTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TTAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
2339823 GAGTTCTCGAGGTTTGATGAGTGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACTCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
2339888 CATCATGTGCGCACACCCCCCAGGCCCGCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
712 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * ** * * *** * *
2339953 TCCGATGATACTCCGACGAAGGTGCCCCGGTGAAGAAAAAAATGATGCCATCACGTGCCCGAGCC
777 TCCGA-CATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * *
2340018 TAGCATGTGCTATCGTAGCCCTCGGTCTGG-CTCGATCTTAGACTGGGAATGAACTCCGTATG
841 CAGCATGTGCTGTCGTAACCCTCGGTCCGGTC-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
2340080 GTTAGACTGGGAATGGACTCCGTATGACTAAGTCAACCCATGAAACGAGCATGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
2340145 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCTTATGCATGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* **
2340210 TGCTGCCACAACCCTCAGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
2340275 CCGACGAAACGAGTAGGCGGGCGGAC-GGACGGGCACTATGCCGACCAGAGAAACGGGATGCACA
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGA-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
2340339 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
2340404 ATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
2340469 CGACTCGATTTT-TATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGAAATTTTTAAAATTTT
390 CGACTC-ATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
2340533 TTTGGAA-GAAGTTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCAT
454 TTCGGAAGGAA-TTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
2340597 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
2340662 TTTAAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
2340727 TGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACTAGCACTCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
2340792 ACATCATGTGCGCACACCCCCCCAGGCCCGCCCGATTGTCGAAACCCCAATACCGTCGATCAGGT
711 ACATCATGTGCGCACACCCCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * * ** * * * *
2340857 TCTCCGATTGTGCTTCGATGATGGTGCCCCGGTGAAGAAAAATGCGGCACCATCGCTTGCCCGAG
775 TCTCCGA-CATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
*
2340922 CACAGCATGTGCTGTCGTAA--CTC--T-C-G---G----T---CT--G---G--C-CCG-AT-
839 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
2340960 CTTAGACTGGGAATGAACTCGGCATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCATTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
2341025 CGGTCAGAGGGGCGGGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGCATGTTGCAGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * * *
2341089 TTGCTGCCGTAACCCTTGGTCCGGTCTCATCTTTGACT-GGAATGAAGTCCGTATGCCTACGCCA
130 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
2341153 ACCGATGAAACGAGCAGGTGGGCAGACAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
2341218 AGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
2341283 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAAA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
2341348 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
2341413 TCGGAA-GAATTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
455 TCGGAAGGAATTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
2341477 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
2341542 TAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
2341607 AGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAA-ATAAGGGCCAAGTACCAGCACTCATCGCAT
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
2341671 ATCATGTTCGCACACCCCTCCGGCTCCCCCGTTCG-CGGGAACCCCAATGCCGCCGGTCAGGTTC
713 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTC
* ** *
2341735 TCCGACGATGCACC-ACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCC
777 TCCGAC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* ** * *
2341799 CAGCATGTGCTG-C-TAAAACCTTCGGTCCAATCCGATCTCAGACTGGGAATGAACTCCGTATA
841 CAGCATGTGCTGTCGT--AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
2341861 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGGAAA-GAGCGTACGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * * * *
2341925 CCAGCCAAAGGGGTGGGATGCTCAAGCC-AGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* ** * *
2341989 CTTGCTACCGTATCCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
2342054 AACCGACGAAACGAGGGGGCGGGCGGGCGGGCGGGCACTACGTCAGCCAGAGATACGGGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ***
2342119 AAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
2342184 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
2342249 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGATTCAAGATTTTTTAAAATTTT
389 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
2342314 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
2342379 AAATATTCAGCTAAAAACT-GAAAGTGTACAATATTTTGTGTCCATTTGAAAAAAATGTCCCCAT
519 AAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
2342443 TTCAGATACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
583 TT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
2342508 TAGTTCTCAAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAATTACTAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * *
2342573 CATCATGTGCGCACACCCCCCGGGCCCCCCCGATCG-CCAAACCCCAATACCGCTGGTCAGGTTC
712 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
2342637 ACCGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATACGACACTAGCACATGCCCGAGCC
777 TCCGAC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * * *
2342702 CAGCATGTGCTG-CTTTAACCCTCAGTCTGGTCCGGTCTTAGACTGGCAATGAACTCTGTATG
841 CAGCATGTGCTGTC-GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
2342764 C-TAGACTGGGAATGAACTTGGTATGGCTAAGTCAACCCACG--A--TG-GTGC---C-C-C-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *** * * * * * ** *
2342817 CGAAGAAAAATGTGGCACTA-GCACATGCCCGAGCGTAGCATGTACTGTCGTAACCCT-TG-GTC
66 CG--GCCAGA-GGGGCGGGATGCGCAAG-CCGAG-G-ATC-GGT-C-G-GGTCCCCCTCTGCGTG
* * ** * * * ** * * *
2342879 CGGTCCAATCTTAGACTGGGAATGAACTC-CGTATGCTTAGACTAGGATGCGTACG-CTGGGGAT
121 CTG-CCGATCTT-G-CT-GCCA-CAACCCTCG-GT-C-CGGTCT--GAT-CTTA-GACTGGGAAT
* * * * ** * * * *** * * *
2342942 CGATCGGGTCCCCCTCTGTATGCTGTCGATCCTGCTGCCGTAACTTTCGGTC---CGGTC-TGA-
174 -GAAC---T----C-C-GTATGC-CT-AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGAG
* * ** ** * * * *
2343002 -GC-TTA-GACTGGGAATGA-ACTCCGTATGC-CTAAGCCAACT-GA-CGAAATTAGCGGGTGGG
227 GGCACTACG-CCGGCCA-GAGAGACGGGATGCGC-AAGCC--GTGGATCG--A-TA--GGGTGGT
* ** ** * *** * * * * *
2343060 CGG-GAGG-GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGTG
282 AGGTG-GGTTTAGGCAC-A--TC-TTCATA-TTTCTGCATGC-CAA----T-G--CCAT----TT
* * * * * * * *
2343123 GTAGGTGGGCTTAGGCACATCTTCATATTTCTA-CGTGCC--AATGCCATTTTTATGGCTTGTAA
329 TTA--T-GGCTT--GTA-A-ATTCATA---CAATGGTCCCTTAA-GCC---TTCA---CGTG-AA
* * * * * * ***** * **
2343185 ATTAACACAATGGTCCCTCAAGCCTCCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATT
376 GTT---TC-ATGG-----CAAG--ACGAC-T-CATTTTCTAT-TTTTCACGA-T-TTTCA-----
** * * * ** *
2343249 TTTCACGATTTTCAAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGCGTTTTGG
420 --------------AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTTG
* *
2343314 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTACAAA
471 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
2343378 CTCGAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
536 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AAACACTTTAATGGC
* * *
2343442 TACGGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGAT
600 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
2343507 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACTCATCATGTGCGCACACCC
665 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
2343572 CCCCGGGCCCCCCCAATCGCCGGAACCCAAATGTCGCCGGTCA-----T--G---TTCTCCGACG
730 CCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACATGCTCCGACG
* * * * * * * * **
2343627 ATGG-GCCCCGACAAAGAAAAATGCGACACCAGCACAGGCACGAGCCCAGCGTGTACTGCCACAA
794 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAA
* * *
2343691 CCCTCAGTCCGGTCCGATCTTAGAGTGGGAATGAACTTCGTATG
859 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
2343735 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
2343800 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* ** * ** *
2343864 CTGCTATCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCA
130 TTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2343929 ATCGACGAAAC-A-----------AGCGGGTGGGCACTACGCCGGCCAGAGAGATGGGATGCACA
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * ***
2343982 AGCTGTGGATCGATAGGATGGTAGGTGGGTTTCGGCACATCTTCATATTTTTATGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
2344047 ATTCTTATGGTTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
2344112 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTTAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
2344177 TCGGAAGGAGTTTTTCCCCCAAACTTAGAAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAA
455 TCGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
2344242 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TT
* *
2344307 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGA
584 TAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
2344372 GTTCTCTTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
2344437 TCATGTGTGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAAAGCCGTCGGTCAGGTTCTC
714 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * **
2344501 C-AGCGATGCTCCGACGATGGTGCCTTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
779 CGA-C-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * * * * * *
2344565 AGCATGTGCTATCGCAACCCTTGGTCTGATCCGATCTTAGACTGGAAATGAACTTCATATG
842 AGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
2344626 CTTACACTACGAATGAACTCTGTATGCCTAAGGCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
2344691 CGGCCAGAGAGGTGAGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * * * * *
2344756 TACTACCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
2344821 CCGACGAAATGAGCGGGCGGGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
196 CCGACGAAACGAGCGGGCGGGC--G-G-GCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * **
2344886 GCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGAACATCTTCATATTTCTGTGTGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
2344951 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAGGCCTTCACGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
2345016 AGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
387 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * ** *
2345081 TTTTCGAAAGGAGTTCTGGCATCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAGCATGCAC
452 TTTTCGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
**
2345146 AAGGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAAAAGTGTCCCC
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCC
* *
2345210 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
581 ATTT-AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
**
2345275 GTGAGTTCTCTTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * ** *
2345340 TACATCATGTGCGAACACCCCCCCGGCCCCCCCGATCTTCGGAACCCCAATGTAGTCGGTCAGGT
710 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** * *
2345405 TCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAATAAAAATATGGCACCAGCACATGCCCGAG
775 TCTC-CGACATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * * * * *
2345470 CCCAGCATTTGCCGTTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATG
839 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
2345534 C
1 C
2345535 CTAAGCCAAC
Statistics
Matches: 8304, Mismatches: 1212, Indels: 728
0.81 0.12 0.07
Matches are distributed among these distances:
853 2 0.00
854 316 0.04
855 53 0.01
856 316 0.04
858 2 0.00
860 1 0.00
862 2 0.00
864 3 0.00
866 2 0.00
867 1 0.00
869 1 0.00
870 2 0.00
871 1 0.00
872 50 0.01
873 86 0.01
874 9 0.00
875 262 0.03
876 291 0.04
877 52 0.01
878 218 0.03
879 397 0.05
880 343 0.04
881 199 0.02
882 10 0.00
883 4 0.00
884 6 0.00
885 3 0.00
887 1 0.00
888 6 0.00
889 420 0.05
890 35 0.00
891 422 0.05
892 26 0.00
893 22 0.00
894 16 0.00
895 6 0.00
896 18 0.00
897 291 0.04
898 461 0.06
899 78 0.01
900 159 0.02
901 155 0.02
902 809 0.10
903 695 0.08
904 65 0.01
905 428 0.05
906 117 0.01
907 462 0.06
908 162 0.02
909 7 0.00
910 1 0.00
912 3 0.00
913 22 0.00
914 9 0.00
915 2 0.00
916 4 0.00
917 15 0.00
918 17 0.00
919 5 0.00
920 18 0.00
921 11 0.00
922 5 0.00
923 4 0.00
925 4 0.00
926 1 0.00
927 1 0.00
928 4 0.00
930 3 0.00
932 3 0.00
934 4 0.00
935 1 0.00
936 1 0.00
937 5 0.00
939 4 0.00
940 4 0.00
941 11 0.00
942 5 0.00
943 4 0.00
944 12 0.00
945 10 0.00
946 3 0.00
947 2 0.00
948 8 0.00
949 22 0.00
950 2 0.00
952 1 0.00
953 4 0.00
954 9 0.00
955 1 0.00
956 5 0.00
957 1 0.00
958 5 0.00
960 3 0.00
961 3 0.00
962 9 0.00
963 1 0.00
964 2 0.00
965 4 0.00
966 10 0.00
967 3 0.00
969 4 0.00
971 93 0.01
972 50 0.01
973 2 0.00
974 8 0.00
975 11 0.00
976 5 0.00
977 5 0.00
978 2 0.00
979 1 0.00
980 8 0.00
981 186 0.02
982 34 0.00
983 111 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:2340091 original size:26 final size:26
Alignment explanation
Indices: 2340055--2340105 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2340045 TGGCTCGATC
2340055 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
2340081 TTAGACTGGGAATGGACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
2340106 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:2343748 original size:26 final size:26
Alignment explanation
Indices: 2343709--2343761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2343699 CCGGTCCGAT
* * *
2343709 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2343735 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2343761 C
1 C
2343762 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:2347000 original size:26 final size:26
Alignment explanation
Indices: 2346971--2347023 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2346961 CTGGTTCGAT
* * *
2346971 CTTAGATTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2346997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2347023 C
1 C
2347024 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2347907 original size:26 final size:26
Alignment explanation
Indices: 2347870--2347941 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
2347860 CTGATCTGAT
2347870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2347896 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2347922 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
2347942 AGAATGCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2348833 original size:26 final size:26
Alignment explanation
Indices: 2348797--2348849 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2348787 CCAATCCAAT
2348797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2348823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2348849 C
1 C
2348850 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2349021 original size:901 final size:900
Alignment explanation
Indices: 2346230--2357711 Score: 13044
Period size: 901 Copynumber: 12.8 Consensus size: 900
2346220 ACCGGTCAGT
* *
2346230 TCCGGTC-GAT-TT-GACTGGGAAATGAACTCCGTATGCCTAAG-CAACCGACAAAAACGAGCGG
1 TCCGGTCTGATCTTAGACTGGG-AATGAACTCCGTATGCCTAAGCCAACCGAC-GAAACGAGCAG
* * *
2346291 GCGGGC-GGCGGGCAACTACGTCGGGCAGAGAGACGGGAAATGCGCAAGCCATGGAGTCGATAGA
64 GCGGGCGGGCGGGC-ACTACGCCGGCCAGAGAGACGGG--ATGCGCAAGCCGTGGA-TCGATAG-
* * * * *
2346355 GGTGGTAAGTGTGTTTTAGGCACAGTCTTCATATTTCTACAAAGTAATGCGAAAGCCATTTTTAT
124 GGTGGTAGGTG-GGTTTAGGCACA-TCTTCATATTTCT-----G-CATGCCAATGCCATTTTTA-
* * * * *
2346420 TGGCATGTGAATTTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAAATGACTC
180 TGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * ** ** * *
2346485 ATTTTTTATTTTTCATCATTTTTGAAACTTTTTGTGATTCGGGATTTTTTAAAATTTTTTTGGAA
244 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * * * * *
2346550 AGTGGTTTGGCGCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCCATGCATAAAAAAATT
309 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
2346615 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
374 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2346680 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGTGGTGTGAGTTCTC
439 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
2346745 GAGGTTTGATAAGTGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGT
504 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
2346810 GCGCACACTCCCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGTCGTCGATCAGGTTCTCC-A
569 GCGCACA---CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* ** * ** *
2346874 -GTAATGCTCCGACGATGGTGCCCCGACGAAGAAAATTTTGGCACCAGCACATGCCCGAGCCCAG
631 CG--ATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAG
* * * ** * * * * *
2346938 CATGTGCTGCTGTAACCCTCGATCTGGTTCGATCTTAGATTGGGAATGAAGTCTGTATGCTTAGA
694 CATGTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
2347003 CTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGCGCTCAACCGGCCA
759 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * ** * ** * *
2347068 GAGGGGTGGGATGTGCAAGCC-TAGATCGATAGGGTCCCCCTCTATGTGCTGTCGATCCTACTAC
824 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTAC
*
2347132 CGTC-ACCCTCGG
889 C-ACAACCCTCGG
* * * *
2347144 TCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGC
* * * * * *
2347209 GGACGGGCGGACGGGCGGGCGGGCACTATGCTGGCTAAAGAGACGGGATCCGCAAGCCGTAGATC
62 --A-----GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
2347274 GATAGAGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGC
119 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
2347339 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
184 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
2347404 CTA----T--T--TTTT-AAGA-TTTTGT--GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
249 CTATTTTTCATGATTTTCAAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
2347457 TTTTGTCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCATAAAAAAATTCAGC
313 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* ** * * *
2347522 TAAAAATTTAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCAATTTCAGACACTTT
378 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
2347587 AATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
443 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
2347652 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
508 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
2347717 ACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTG-CTGGTCAAGTTCTCTGGCGATGC
573 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGC
* * **
2347780 AT-CGACGATGGTGCCCCGAG-GAAGAAGAATGCATCACCAGCACATGCCTGAGCCCAGCATGTG
637 -TCCGGCGATGGTGCCCCG-GTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTG
* * *
2347843 CTGCCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGA
700 CTGCCGCAA-CC-C--TC-G----G-TC-----C-----A-G---TCC-AAT-CTTAGACTGGGA
* * * * *
2347908 ATGAACTCTGTATGCTTAGACTGGGAATGAACTCAGAATGCCTAAGTCAACCCACGAAAGGAGTG
739 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *** *
2347973 TGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCAGGTTTGCCTCGG
804 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
** * *
2348038 CGTGCTGTTGATCCTGCCACCACAACCCTTGG
869 CGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * *
2348070 TCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* * * *
2348135 GGGCGGGCGGGCACTACACCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTT
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * ** * *
2348200 GGTGGGTTTGGGCACTTCTTCATATCTCTGCATGTGAATGACATTTTTATGGCTTGTAAATTCGT
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
2348265 ACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * * *
2348330 ATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTAGCCCCGAA
261 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
2348395 CTTGGTAGACGTGATGCTTGTATTTTTTTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAA
326 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAA
* **
2348460 GTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGATGCTTTAATGGCTACTGG
390 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
2348525 CAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
455 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
2348590 TAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCCCCCCGG
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * *
2348655 CCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTG
585 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * * *
2348720 CCCCGGTTAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACACTCA
650 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
2348785 GTCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
715 GTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* *
2348850 CTAAGTCAACGCACGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
780 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * * **
2348915 AGGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTCCTGCCACAACCCTCAA
845 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * * * *
2348971 TCTGGTCAGATCTTAGACTGGGAATGCACTTCGTATACCTAACCCAACCGACGAAAGGAACGAGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGC
* * * *
2349036 AGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGT
62 AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
2349101 CGTAGGTGGGTGTAGGCACATGTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
2349166 TCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * * * * *
2349231 CATGATTTTTGAAACTCTTTGCAGTT-TGGATTTTTAAAAATTTTTTCGAAATGAGTTTTGGCCC
257 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
2349295 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
2349360 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
387 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
2349425 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAA
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
2349490 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAG-ACACACCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCC
* ** *
2349554 CCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCC-AGCGACACTCTGGCGA
581 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGGCGA
**
2349617 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG-CCAGCATGTGCTGCCGCAAC
645 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAAC
*
2349681 CCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
710 CCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
** * *
2349746 TATGGTTAAGTCAACCCACGGAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
775 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * ** * *
2349811 AAGCCGAGCATCGACCGGGTCTCCCTCTATGTGCTGCCGATCTTGCTACCGCAACCCTCGG
840 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * *
2349872 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGATGAAACGAGCGGTT
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----
* * * *
2349937 GGGCGGGCGGGCGGGCACTACGTCGGCCAGACAGACTGGATGCGCAAGCCGTGGATCGATAGGGT
62 AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *** * *
2350002 GGTAGGTGGGTTTAGGAACATCTTCATATTTCTATGTGCCAATTCCTTTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
2350067 TCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * * **
2350132 CATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTAGAAC
257 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * * *
2350197 CAAACTTGGTAGACGTGATACTTCTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACCC
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
2350262 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
387 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
2350327 TGGTAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TCCCGAGGTTTGACGAG
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
2350391 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-TCCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * *
2350455 CGG--CGCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGGGATG
582 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * * *
2350518 GTGCCCTGGGGAAGAAAAATGCGTCACCAGCACATGCCCGAGCTCAGCATGTGCTGCAGCAACCC
647 GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
* * ** *
2350583 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTA
712 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
2350648 TGCTTAAGTCCACCCACGAAACGAGTGTGAGGGCACTCAGCCGGCTAGAGGGGCGGGATGCGCAA
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * *
2350713 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTTGG
842 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * * * *
2350772 TCTGATCCGATCTTAGACTGGAAATGAACTCAGTATGCCTAAGCCAACGGACGAAACGAGTGTGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC
* * * * *
2350837 AGGCGGGCGGGGGGGCACTACACCGACCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
62 AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
2350902 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * * *
2350967 TCATACAATGGTCCCTTAATCCTTCACATAAAGTTTCATGGCAAGACTACTCGTTTTTTATTTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** ** * *
2351032 CACGATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTATTCGGAAGGAGTTTTGGCAC
257 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
2351097 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCAAAAAAAAATTTAGCTAAAAACTC
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
2351162 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTAC
387 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
2351227 TGCCAGCAAACCTGTAAACTCTCAAATGCTTTTTAA-GGGGTGTGGGTTGTCGAGGTTTGATGAG
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * *
2351291 GGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATTGCACATCACGTGCGAACA-CCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
2351355 C-GCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTTAGGTTCTCCGACGAAGCTCCGGCGATG
582 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * * *
2351419 GTGCCCTGGTGAAGAAAAATGCAGCACCAGCAGATGCCCGAGCCCAGCATGTGTTGCAGCAACCC
647 GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
* ** * *
2351484 TCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTA
712 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * **
2351549 TGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATAG-GTG
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT-GCGCA
* * * * * ** *
2351613 AGCCGAGGATCGATCGGGTCTCCCTCTGTGTGCTGTCGATCCTACTACTGCAACCCTTGG
841 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * * * *
2351673 TTCGGTCTAATCTTAGACTGGGAATGAACTCTGTACGCTTAAGCCAATCGACGAAACGAGCAGAC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--A-
* * * *
2351738 GGACAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGTATGCGCAAGCCGTGGATCGATAGAGT
63 GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
** *
2351803 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCTATTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
2351868 TCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTACTATTTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * **
2351933 CATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCTA
257 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * * * * * * * *
2351998 TAACCTTGGTAGATGTGATTCTTGTATTTTTGTTGGCATGC-GAAAAAAAGTCGGGTAAAAACTT
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
2352062 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
387 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
2352127 TGGCAGCAAACCTGTAAAATCTCACATGCTTTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAG
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
** * * *
2352192 GGATAGGGGGAAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGTGAACA-CCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * *
2352256 CGGCTCCCCCGATTG-CTGGAACCCCAATGTCGTCGCTCAGATTCTCCGACGATGCTCTGGTGAT
582 CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
* ** * * *
2352320 GGTGCCCTGGCAAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGTTGCAGCAACC
646 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACC
*
2352385 TTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGT
711 --C--TC--G---G-TC-----C-----A-G---TCC--AATCTTAGACTGGGAATGAACTCCGT
* * *
2352450 AAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGC-C
750 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * * ** * *
2352514 TAGCCAGCTGGAGGGGCGGGATGCCCAAGCCGGGGATCGACCGGGTCCCCCACTATGTGCTACCA
815 -AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCG
* * * **
2352579 ATCCTGTTGCCGCAATGCTCGG
879 ATCCTGCTACCACAACCCTCGG
* * ** ** * *
2352601 TCCAGTCTGATCTTAGACTGGCAATGAACTCAATATGAATAAGCCGACCGATGAAACGACCTGAC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-C
* ** * * *
2352666 GGGCGGGCGGAAGGGCATTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCCATAGGGT
62 AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * *
2352731 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATACCGTTTTTATGGCTGGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
** *
2352796 TCATACAATGGTCCCACAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
2352861 CATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGACC
257 CATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* *
2352926 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTC
322 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
2352991 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-TTCCCATTTCAGACACTTTAATGGCTAC
387 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
2353055 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGATTTCTCGAGGTTTGATGAG
452 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
2353120 GGATAGGGGGCCAATATAGGGGCCAAGTACTAGCACCCATCGCACATCATGTGTGCACA-CCCCC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
2353184 CAGCTCCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
582 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * ** *
2353249 TTGCCCCGGTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGGATGTGCTGCTACAATCC
647 GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
2353314 TCGGTCCACTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTAGGAATGAACTTCGTA
712 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * ** * * * * * *
2353379 TGCCTAAGTCAACACACGAAATGAGCGTACAGGCTTTCAGTCAGCCAAAAGGGCGAGATGTGCAA
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * **
2353444 GCCGGGGATCGGTCGGGTCCCCCTGTGTGTGCTGCCGATCCTACTGCCATAACCCTTAG
842 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * *
2353503 TCCGGTCTGATCCTAGACTGGGAATGAACTCTGTATCCCTAAGCCAACTGACGAAACGAGCAGGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* *
2353568 GGGCGGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
2353633 GCTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
2353698 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
2353763 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
261 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
2353828 CTTGGTGGACGTGAACCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAG
326 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
2353893 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGT
391 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
2353958 AGCAAACCTGTAAAATCTTGAAA-GCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
456 AGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * * *
2354021 TAGTGGGCCAATATAAAGGCCAAGTACCAGAACCCGTTGCACATCATGTGCGCACA-CCCGCCGG
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * *
2354085 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATACTCCGGCGATGCTG
585 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * ** * *
2354150 CCCCGGTGAAGAAAAATACGGCACCAACACATGCCTGAGCCCAGCATGTTTTGCTGCAACCCTCA
650 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCG
* ** * * * **
2354215 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAGACTGGGAATGAACTCCATATTA
715 GTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * **
2354280 CTAAGTCAACACACAAAACGAGCGTGCGGGCGCTCAGCCAGCAAGAAGGGCCAGATGCGCAAGCC
780 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
2354345 AGGGATCGATCGGATCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCAG
845 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * *
2354401 TCCGGTCTAATCTTAAACT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAC--G-A---
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* * * *
2354459 --GCGAGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAAGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *** * *
2354522 GGTGGGTTT-GGCCACATCTTCATATTGCTATGTGCCGATGCCATTTTTTTGGCTTGTAAATTCA
131 GGTGGGTTTAGG-CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *** *
2354586 AACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGCAATTTGACCCGTTTTCTATTTTTCAT
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
2354651 AATTTTCAAAACTTTTTGA-GGTTCAGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
260 GATTTTCAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
2354714 AACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
324 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
2354779 AGTGTACAAGATTTT-TGGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTACT
389 AGTGTACAAGATTTTGT-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
2354843 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGG
453 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
2354908 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGT-GCACATCATGTGCGCACACCCCCC
518 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCCCC
* * * * * *
2354972 CGGCCCTCCCGATTGTCGGAACCCCAATGCCGTCGATCAGGTTCTCTGGCGATGCTCCAGCGATG
582 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
*
2355037 GAGCCCC----------AA--C--C-CC-G---A-GCC--A----AGCATGTGCTGCCGCAACCC
647 GTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
* * * * * * * * *
2355076 TTGGTTCGGTCCGATTTTAGACTGGGAATGAAATCCATATGCTTCGACTAGGAATGAACT-CGTA
712 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
2355140 TGCCTAAGTCAACTCACGGAATGAGCGTGTGGGCACTCAGCCGGCTAGAGGGACGGGATGCGCAA
777 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
2355205 GCCGGGGATCGACCGTGTCACCCTTTGCGTGTTGCCGATCCTGTTACCGCAACCCTCGG
842 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * *
2355264 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAAC--G-A-GC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* * *
2355325 GGGCGGGCGGGCACTACGCCGGCCAGAGAGA-TGGATGCGTAAGCCGTGGATCGGTAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
2355389 GGTGCGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * * *
2355454 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCATTTTTTATTTTACACG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** ** ** * *
2355519 ATTTTTGAAACTTTTCGCCGG-TCAAGA----TT-AAA-----T-GAAAGG-G-ATTGG-CCC-A
261 ATTTTCAAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * ** *
2355568 AC-T-G-AGACGTGATCC-CG-ATTATGTTT-GC-GGCACAAAAAGGTTCAGCTAACAACTCGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
2355626 GTGTAC-AGATGTCGATG-CCACTTTG--AAAATTGTCCCCATTCTCAGACAC--GACTGAGCTA
390 GTGTACAAGATTTTG-TGACCA-TTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATG-GCTA
* * * *
2355685 CTGGCAGCCCACCCTGTAAAATGCT---TTGCATC--TACAGGAGTGTGGTGA-TTC-CGA-GTT
451 CTGGCAG-CAAACCTGTAAAAT-CTCAAATGC-TCTTTA-AGG-GGGT-GTGAGTTCTCGAGGTT
* * * *
2355742 TGATGAGGGATA-GGGGCCAATATATGGGCC-AGTACCAG-ATCCATTGGAC--CATGT--G--C
510 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * ** **
2355798 ACCGCACAAGCCGCCCCTCGAT-GTC-GAACCCC-ATGCCACCGGTCAGGTTCT-------T-CT
575 ACCCCCCCGGCC-CCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
2355852 TCGACGATAGTG-CCCGTGTGAAGAAAAATTCGGCAAACCAGCACATGCAT-A-CCCAACATGT-
638 CCGGCGATGGTGCCCCG-GTGAAGAAAAATGCGGC--ACCAGCACATGCCTGAGCCCAGCATGTG
* * * *
2355913 CTGCCGCAACCC-CGGT-CTG-GC-ATCTTA-ACTTGG-ATGAACT-GGTA-GCTTAGACT-GGA
700 CTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
2355969 ATGAACT-CATAAGCCT-AGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGA----
765 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * ** ** *
2356028 -GGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTCGTAAA
830 CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAAC
*
2356092 ACTCGG
895 CCTCGG
** * *
2356098 TTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGAAACGA--A--C
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
* * * **
2356159 GGGCGGGTGGGCACTATGTCGGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * * *
2356224 GGTGCATTTACGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
2356289 GCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTTACG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
** * * * *
2356354 ATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAA
261 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
2356419 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
326 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
2356484 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGC
391 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
2356549 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGAC
456 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
2356614 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGG
521 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GG
** * *
2356679 CCCCCCCGATCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGGTCCGGCGATGGTG
585 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
** * * *
2356744 CCCCGACGAAGAAAAATACGACACCAGCACATGCCCGA-CCCAGCATGTGCTGCCGCAACCCTC-
650 CCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCG
* *
2356807 -T---G-----TC-----C--GG--T----T-C-AAT-CTTAGACT-AGAATGAACTCCGTATGC
715 GTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
2356846 CTAAGTCATCCCACTAAACGAGCGTGCGGGCGTTCAACCGGCCAGAGGGGTGGGATGCGTAAGCC
780 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
** ** * * * * * * *
2356911 GAAGATCGGCCGGGTCCCCCACTGCGTGCTTCCGATCCTGCTGCCACAATCGTTGA
845 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
* * * * * * * * *
2356967 TTCAGTCCGATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAACAAGCGGGC
1 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---A
* *
2357032 GGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGAT
63 GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
2357097 CGTAGGTTGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
2357162 TCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGAC-AGCTCATTTTCTATTTT
192 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTT
** * *
2357226 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTTGCC
256 TCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
2357291 CCAAACTTGGTAGACATGATCCTTGTATGTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACT
321 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
2357356 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
386 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
2357421 CTGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGA
451 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
2357486 GGGATCGAGGGCCAATCTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
516 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** * * * *
2357550 CCGACCGACCCGATTGTCGAAACCCCAAT---GTC-GTC-GG-T-T---A-GGTTCTCCGGCGAT
581 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
** * * * * * **
2357604 GGTGCCCCGACGAAGAAAAATGCAGCCCCAGCACATGCCCGAGCCCAGCATCTACTTTCGCAACC
646 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACC
** * * ** *
2357669 CTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
711 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
2357712 CTAAGACAAC
Statistics
Matches: 9073, Mismatches: 1195, Indels: 623
0.83 0.11 0.06
Matches are distributed among these distances:
823 3 0.00
824 9 0.00
825 1 0.00
832 16 0.00
833 16 0.00
834 147 0.02
835 173 0.02
836 1 0.00
837 5 0.00
838 2 0.00
839 45 0.00
840 28 0.00
841 27 0.00
842 20 0.00
843 17 0.00
844 38 0.00
845 38 0.00
846 44 0.00
847 7 0.00
848 13 0.00
849 15 0.00
850 20 0.00
851 2 0.00
852 2 0.00
853 14 0.00
854 4 0.00
855 11 0.00
856 3 0.00
857 45 0.00
858 33 0.00
859 32 0.00
860 12 0.00
861 15 0.00
862 35 0.00
863 137 0.02
864 199 0.02
865 21 0.00
866 5 0.00
867 159 0.02
868 36 0.00
869 108 0.01
870 20 0.00
871 13 0.00
872 19 0.00
874 2 0.00
875 26 0.00
876 8 0.00
877 472 0.05
878 13 0.00
879 12 0.00
880 38 0.00
881 5 0.00
882 2 0.00
884 1 0.00
887 5 0.00
888 184 0.02
889 271 0.03
890 70 0.01
891 1 0.00
894 1 0.00
895 1 0.00
897 42 0.00
898 699 0.08
899 262 0.03
900 823 0.09
901 1374 0.15
902 589 0.06
903 483 0.05
904 83 0.01
905 203 0.02
906 6 0.00
907 1 0.00
908 3 0.00
909 2 0.00
910 1 0.00
912 3 0.00
913 1 0.00
914 230 0.03
915 11 0.00
916 38 0.00
917 19 0.00
918 4 0.00
919 2 0.00
920 6 0.00
922 21 0.00
923 20 0.00
924 17 0.00
925 193 0.02
926 299 0.03
927 118 0.01
928 734 0.08
929 62 0.01
931 1 0.00
932 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGC
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGG
TCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGG
Found at i:2349727 original size:26 final size:26
Alignment explanation
Indices: 2349698--2349749 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2349688 CCAGTCCAAT
2349698 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2349724 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2349750 GTTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.