Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 16 of 129
Found at i:2350627 original size:26 final size:26
Alignment explanation
Indices: 2350598--2350653 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
2350588 CCGGTCTGAT
2350598 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
2350624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATA
2350650 CTTA
1 CTTA
2350654 AGTCCACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:2351537 original size:26 final size:26
Alignment explanation
Indices: 2351499--2351548 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2351489 CTGGTCCAAT
*
2351499 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
2351525 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
2351549 TGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:2352437 original size:26 final size:26
Alignment explanation
Indices: 2352401--2352476 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
2352391 CTGGTCTGAT
2352401 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
2352427 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
2352453 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
2352477 TGCCTAAGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:2361059 original size:26 final size:26
Alignment explanation
Indices: 2361030--2361082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2361020 CTGGTCTGAT
*
2361030 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2361056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2361082 C
1 C
2361083 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2363747 original size:26 final size:26
Alignment explanation
Indices: 2363696--2363748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2363686 CCAGTCCGAT
*
2363696 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
2363722 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
2363748 C
1 C
2363749 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:2364025 original size:900 final size:895
Alignment explanation
Indices: 2359302--2364994 Score: 7032
Period size: 899 Copynumber: 6.4 Consensus size: 895
2359292 GCTATCCGAT
* ** * *
2359302 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCCAGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * *** ** * * * *
2359367 CGGTCAGAGGGGTGGGATGCACAAGCC-AAGATTG-GTAGGTCCCCTTCTGTGTGCTGCCGATAC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
* * * ** * * *
2359430 TACTACCGCAACCCTTGGTTC-GATCTGATCTTAGCCTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
2359494 ATCGACGAAACAAGCGGGCGGGCGGGCGAGCACTAAGCC-GCAAAGACAGACGGGATGCGCAAGC
196 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCAAGC
* * * *
2359558 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
260 CATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
*
2359623 TTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * * *
2359688 CTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGGGGTTCGGAATTTTTTAAAATATTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCA
* *
2359753 GAAGGATTTTTGGCCCCAAACATT-GTAGACGTGATCCTTGTATTTTTGTTGCCATGCACAAAAA
455 GAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
2359817 AGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* * * *
2359882 GACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGGGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
2359947 TCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
649 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
2360012 CTGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCTATG-C-TGTC-GG-TCA--A-G-
714 ATGTGCGCACACCCCCCCG-CCCCCCGATCGCCGGAACCCCAATGCCGCGTCAGGTTCACGACGA
* * * * * *
2360069 TTCTCCGGTGATGTTGGTGCCCCGACGAAGAAAAA-GACGGCACCGGCACATGCCCGAGCCCAGC
778 TGCTCCGGCGA---TGGTGCCCCGTCAAAGAAAAATG-CGGCACCAGCACATG-CAGAGCCCAGC
2360133 ATGTGCTGCCGCAA-CC-C--T-CAGT-C---C----A----G--T---C-CC--AT-
838 ATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * ** *
2360165 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACAGGCATTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * **
2360230 CGGCCAGAGAGGCGAGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
** * * * * * *
2360295 TATTGCTGTAACCCTCAGTCCT-GTCCGATCTTGGACTGGGAATGAACTCCGTATCCCTAAGCCA
131 TGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * *
2360359 ACCGATG-AA--A-C--G-G-GCGGGCGGGCACTACGTCGGCTAGAGATACGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
2360416 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTT
261 ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
2360481 TTATGGTTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
2360546 TCGTTTTCTATTTTTCACGATTTTTGAAACTATTTGCAGTTCATGATTTTTTAAAATTTTTT-GG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAG
* * ** * *
2360610 AAACGTGTTTTATCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
456 -AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
2360675 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* *
2360740 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGAGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** * *
2360805 CTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCA
650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
2360870 TGTTCGCACACCCCCCTGGCACCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGC
715 TGTGCGCACACCCCCC-CGCCCCCCGATCGCCGGAACCCCAATGCCG-C-GTCAGGTTCAC-GAC
* * * * * * *
2360935 TATGCTCTGGCGGTGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
776 GATGCTCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGGCACCAGCACATG-CAGAGCCCAGCAT
* * ** * **
2361000 GTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
840 GTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
2361056 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCATGTGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** ** * ** * * * * **
2361121 CGGCTTGAGGGGCGGGATGCAAAAGTCAAGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
** * * * *
2361186 TGCTGCCACAACCCT-TGGTCTGAT-TCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCC
131 TGCTGCCGTAACCCTCAGTTCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * * *
2361249 AACCGACGAAACGAACGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGC
195 AACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
2361314 CGTGGATTGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
260 CATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
2361379 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
2361444 CTCATTTTGTATTTTTCACGATTTTTGAAACTTTTTGT-GGTTCGGGATTTTTTAAAATTATTTC
390 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
2361508 GGAAGGAGTTTTGGCCACAACCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
2361573 ATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTTA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* * * *
2361638 GACACTTTAAAGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGACT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
2361703 TCTTGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
649 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
2361768 ATGTGCGCAAACCCCTCCGGCCCCCCCCGATCGCTGGAAACCCAGTGCCGCCGGTCAGGTTCTCC
714 ATGTGCGCACACCCC-CC--CGCCCCCCGATCGCCGGAACCCCAATGCCG-C-GTCAGGTTC-AC
* * * **
2361833 GGCGATGCTCCGGCGATGGTGCCCCCG-CGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCA
773 GACGATGCTCCGGCGATGGTG-CCCCGTCAAAGAAAAATGCGGCACCAGCACATG-CAGAGCCCA
* *
2361897 GCACGTGGTGCCGCAA----C---CC--T-CGATC-----C---G---G---TCCA-AT-
836 GCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
2361931 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * * * *
2361996 AGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGATCCCCCTCTACAG-GCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGC-GTGCTACCAATC
* * * ** * *
2362060 CTGCTACCGTAACCCTC-GATCTGATCCCATCTTAGACTAGGAATGTACTCCGTATACCTAAGCC
130 CTGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
** * *
2362124 AACCGATAAAACGAGCAGGCCGACGAGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGC-GG--G-CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
2362189 AAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
256 AAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
2362254 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
2362319 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTAT-GGTTCAGGATTTCTTAAAATTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTCGGGATTTTTTAAAATTT
2362383 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** * *
2362448 AAAAAATTCAGCTAAAAACTCGAAGCATACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
2362513 TTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
2362578 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCAATCGCA
645 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
2362643 CATCATGTGCGCACACCCCCTCGGCCCCCGATCGTCGGAACCCCAATGCCGC--C-GG-TCA-G-
710 CATCATGTGCGCACACCCCCCCGCCCCCCGATCGCCGGAACCCCAATGCCGCGTCAGGTTCACGA
* * * *
2362702 -G-TTCTCCCGCGATGGTGCCCCGGT-AAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
775 CGATGCTCCGGCGATGGTGCCCC-GTCAAAGAAAAATGCGGCACCAGCACATG-CAGAGCCCAGC
* *
2362764 ATGTGCAGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAATATG
838 ATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
2362822 CTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
2362887 TGGCCAGAGCGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGTTGCGTGCTGCCCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
* *
2362952 TACTGCCGGAACCCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
2363016 ACCGACGAAATGAGCGGACGGGCGGACGGGCACTACTTCGGCCAGAGAGACGGGATGCGCAAGCC
196 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
2363081 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATCCCATTT
261 ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
2363146 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
2363211 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAG
* *
2363276 AAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACA
456 AAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * ** *
2363340 ATTCATCTAAAAACTCGAAGTGTACAAGATATTCTGACAATTTGAAAAAAAAGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
**
2363405 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
2363470 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
2363535 TGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCAGTCAGGTTCAACGA
715 TGTGCGCACACCCCCCC-G-CCCCCCGATCGCCGGAACCCCAATGCCG-C-GTCAGGTTC-ACGA
*
2363600 CGATGCTCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGCA
775 CGATGCTCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGGCACCAGCACATGCA-GAGCCCAGCA
* *
2363665 TGTGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
839 TGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
2363722 CTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * **
2363787 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCCCACTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
* * * * *
2363852 TGCTGCAGCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGGACTCCGTGTGCCTAAGCCA
131 TGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* *
2363916 ACCGACGAAACGAGCGGGTGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
196 ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ** *
2363981 ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTGGTAATGGCATTT
261 ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
2364046 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
2364111 TCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCG
391 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTCA
* *
2364176 GAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
2364241 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * *
2364306 ACACTTTAATGGTTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
2364371 CTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCA-CCATTCGCACATC
650 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATC
* * * * *
2364435 ATGTGCACACACCGCCCGGCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGAC
714 ATGTGCGCACACCCCCCCGCCCCCCGATCGCCGGAACCCCAATGCCG-C-GTCAGGTTCAC-GAC
* * *
2364500 GATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCAGAGCCCAGGAT
776 GATGCTCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGGCACCAGCACATG-CAGAGCCCAGCAT
* *
2364565 GTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATAAACTCCATATG
840 GTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
2364621 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * *
2364686 CGGCCAGAGGGGTGGGATGCGCAAGTTGGGGATCGACCGGGTTCCCCGCTGTGTGCTACAAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
* ** * *
2364751 TGTTATCGTAACCCTCCA-TT-TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
131 TGCTGCCGTAACCCT-CAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
2364814 AACTGACGAAACGAGCAGGCGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGC
195 AACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
2364879 CATGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTATC-TGCCAATGCCAT
260 CATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCAT
* *
2364942 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACAATGAAGTT
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTT
2364995 NNNNNNNNNN
Statistics
Matches: 4212, Mismatches: 493, Indels: 214
0.86 0.10 0.04
Matches are distributed among these distances:
856 4 0.00
857 483 0.11
858 6 0.00
859 1 0.00
861 4 0.00
862 3 0.00
863 79 0.02
864 11 0.00
865 197 0.05
866 4 0.00
867 1 0.00
868 8 0.00
869 2 0.00
870 4 0.00
871 2 0.00
872 3 0.00
874 2 0.00
875 180 0.04
876 29 0.01
877 2 0.00
878 3 0.00
879 477 0.11
880 2 0.00
882 1 0.00
883 2 0.00
884 1 0.00
886 4 0.00
887 476 0.11
888 2 0.00
889 28 0.01
890 11 0.00
891 341 0.08
892 4 0.00
893 1 0.00
894 4 0.00
895 3 0.00
896 1 0.00
897 3 0.00
898 57 0.01
899 887 0.21
900 497 0.12
901 375 0.09
902 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGCTGCGTGCTACCAATCC
TGCTGCCGTAACCCTCAGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGCCCCCCGATCGCCGGAACCCCAATGCCGCGTCAGGTTCACGACGATGC
TCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGGCACCAGCACATGCAGAGCCCAGCATGTGCTG
CCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:2364624 original size:26 final size:26
Alignment explanation
Indices: 2364595--2364647 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2364585 CCAGTCCGAT
2364595 CTTAGACTGGGAATA-AACTCCATATG
1 CTTAGACTGGGAA-AGAACTCCATATG
*
2364621 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
2364647 C
1 C
2364648 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:2364778 original size:899 final size:897
Alignment explanation
Indices: 2361931--2364994 Score: 4302
Period size: 900 Copynumber: 3.4 Consensus size: 897
2361921 CCGGTCCAAT
*
2361931 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** * * **
2361996 AGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGATCCCCCTCTACAG-GCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGC-GTGCTGCTGATC
* ** * *
2362060 CTGCTACCGTAACCCTC-GATCTGATCCCATCTTAGACTAGGAATGTACTCCGTATACCTAAGCC
130 CTGCT-CCGTAACCCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
** * * *
2362124 AACCGATAAAACGAGCAGGCCGACGAGCGGGCGGGCACTATGCCGACCAGAGAGACGGGATGCGC
193 AACCGACGAAACGAGC-GG--G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
2362189 AAGCCGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
254 AAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
2362254 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
2362319 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTAT-GGTTCAGGATTTCTTAAAATTT
384 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-TCGGTTCGGGATTTTTTAAAATTT
*
2362383 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
448 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** * *
2362448 AAAAAATTCAGCTAAAAACTCGAAGCATACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
2362513 TTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
2362578 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCAATCGCA
643 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
2362643 CATCATGTGCGCACACCCCCTCGG-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG---T
708 CATCATGTGCGCACACCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
2362704 -T--C--T-C-CC-GCGATGGTGCCCCGGTAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
772 CTGACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
2362761 AGCATGTGCAGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCAATATG
837 AGCATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * **
2362822 CTTAGATTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * **
2362887 TGGCCAGAGCGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCGT-TGCGTGCTGCCCATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCC-TCTGCGTGCTGCTGATC
* *
2362951 CTACTGCCGGAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCT-CCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * **
2363016 ACCGACGAAATGAGCGGACGGGCGGACGGGCACTACTTCGGCCAGAGAGACGGGATGCGCAAGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
2363081 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATCCCATTT
259 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
2363146 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
2363211 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCAG
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
2363276 AAGGA-TATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAACA
454 AAGGAGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * ** *
2363340 ATTCATCTAAAAACTCGAAGTGTACAAGATATTCTGACAATTTGAAAAAAAAGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
**
2363405 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
2363470 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
648 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
2363535 TGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGTCAGTCAGGTTCAAC-G
713 TGTGCGCACA-CCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC-TCTG
* * **
2363599 ACGATGCTCCGGCGATGGTGCCCCGTCAAAGAAAAATGCGACACCAGCACATGCATGAGCCCAGC
775 ACGATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
2363664 ATGTGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
840 ATGTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * **
2363722 CTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
2363787 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCCCACTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
2363852 TGCTGCAGCAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGGACTCCGTGTGCCTAAGCCA
131 TGCT-CCGTAACCCTCAGTCT-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
2363916 ACCGACGAAACGAGCGGGTGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * ** *
2363981 ATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTGGTAATGGCATTT
259 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
2364046 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
2364111 TCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCG
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTT-CGGTTCGGGATTTTTTAAAATTTTTTCG
* *
2364176 GAAGGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
453 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
2364241 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * *
2364306 ACACTTTAATGGTTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
2364371 CTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCA-CCATTCGCACATC
648 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATC
* * *
2364435 ATGTGCACACACCGCCCGGCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGAC
712 ATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGAC
* * *
2364500 GATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCAGAGCCCAGGAT
777 GATGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
2364565 GTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATAAACTCCATATG
842 GTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
2364621 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* ** * * * * * **
2364686 CGGCCAGAGGGGTGGGATGCGCAAGTTGGGGATCGACCGGGTTCCCCGCTGTGTGCTACAAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * * * *
2364751 TGTTATCGTAACCCTCCA-TTTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
131 TGCT-CCGTAACCCT-CAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
2364815 ACTGACGAAACGAGCAGGCGGGCGGGCGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGCC
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
2364880 ATGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTATC-TGCCAATGCCATT
259 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATT
* *
2364943 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACAATGAAGTT
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTT
2364995 NNNNNNNNNN
Statistics
Matches: 1939, Mismatches: 204, Indels: 52
0.88 0.09 0.02
Matches are distributed among these distances:
886 2 0.00
887 470 0.24
888 6 0.00
889 32 0.02
890 3 0.00
891 175 0.09
892 2 0.00
895 1 0.00
897 1 0.00
898 57 0.03
899 427 0.22
900 494 0.25
901 268 0.14
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGATCC
TGCTCCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATG
CTCCGGCGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:2366513 original size:26 final size:26
Alignment explanation
Indices: 2366477--2366529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2366467 GCTGACTTAG
2366477 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
2366503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
2366529 G
1 G
2366530 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:2367415 original size:26 final size:26
Alignment explanation
Indices: 2367379--2367431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2367369 GTTGACTTAG
*
2367379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2367405 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2367431 G
1 G
2367432 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2368009 original size:891 final size:890
Alignment explanation
Indices: 2365999--2372424 Score: 6809
Period size: 865 Copynumber: 7.2 Consensus size: 890
2365989 NNNNNNTACG
** * *
2365999 TGCCAACAAAAATACAAGGATCACGTCTTACCAAAGTTTGGCTCAAAAACTTCTTCCAAAAAAAT
1 TGCCAACAAAAATACAAGGATCACGTC-TACC-AAGTTTGGGGCAAAAACTCCTTCCGAAAAAAT
* * * * *
2366064 TTTAAAAAATCCTGAACAGCAAAAAGTCTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
64 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
2366129 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
129 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
2366194 GGCATGCAGAAATATGAAGATATGCCAAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCA
194 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
2366259 TCCCGTCTCTTTGGCCGGCGTAGT----GCCCG--C-CC-GCCCGCTCATTTCATCAGTTGGCTT
259 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * *** * * **
2366316 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGTCCGAGGGTTACAGCAGCAGGATCG
324 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGAATG-GGGTTGCGGCAGCAGGATTA
* * * * ** * *
2366380 GCAGCACATAGAGGGGGACCCAACCGATCCCCGACTTATGCATCCCGCCCCTCTGGTCGGCTAAG
387 GTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
2366445 CGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACG
452 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
2366510 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCAGGC
517 GAGTTCATTCCCAGTCTAAGATCGAACCGGA-CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** ** * *
2366575 ATGTGCTGGTGCCGCATTTTTCTTCACCGACGCACTATCGCCGGAGCATTGCCGGGGAACCTGAC
581 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACC-GA--A--------GAACCTGAC
** ** * * *
2366640 CGACGGTGTTGGGG-TCCGGTGATCAGTGGGGTCGGGGGGTTGTGCGCACATGATGTGCGATGGG
635 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGG
* * *
2366704 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACAACCCCT
699 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
2366769 TAAAGAGCATTTCAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
764 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
2366834 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTTTTGCA
829 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCA
* * * *
2366897 TGCCAACAAAAATATAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
* ** *
2366962 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT-GACGAAAAATAGAAAACGAGTCGTCTTGCC
66 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCC
*
2367026 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTG
130 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
2367091 GCATGCAGAAATATAAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATTCACGGCTTACGCAT
195 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
2367155 CCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCTGCCCACTCGTTTTGTCGGTTGGCTTA
260 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
2367220 -GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGAATGGGAGTTGCGGTAGCAGGATTAGC
325 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAATGGG-GTTGCGGCAGCAGGATTAGT
* ** ** *
2367284 AGCACACAAAGGGGGACCAAATTGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCG
389 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
2367349 CCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
454 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * ** *
2367414 GTTCATTTCCAATCTAAGATCGAACCGGACATAGGGTTGCGGCAGCACATGTTTTGCTCGGGCAA
519 GTTCATTCCCAGTCTAAGATCGAACCGGACA-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
2367479 GTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATCACCGAAGAACCTGACCAACAGCATTTGG
583 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGAACCTGACCGACGGCA-TTGG
* * * * *
2367544 GGTTTCGACAATCGGGGGGGCCGAGGGTGTGTACGCACATGATGTGCAAT-GGTGCTGGTACTTG
647 GGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2367608 GCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
711 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2367673 GAGATTTTACAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGCACATTTTTTTCAAAT
776 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
2367738 GGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAGTGCA
841 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
2367788 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCATTCCAAAAAAATTT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
* * * * *
2367853 AAAAAAATCCCAAACCATAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGCCA
66 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
2367918 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
131 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
2367983 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
196 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
2368048 CCATCTCTTTGGCTGACGTA------G--CG--C-CC-GCCCGCTCATTTCGTCGATTTGCTTAG
261 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * *
2368101 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAG-ATCGAGCATTGCAGTAGCAGGA-TCGA
326 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAAT-G-GGGTTGCGGCAGCAGGATTAG-
** * * * *
2368164 TAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTGAAC
388 TAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
2368229 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAGTCCCAGTCTAAG-AT-C-G
453 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
2368291 -G---------A-TC----A--G-ACC-G---AGGGTTGCAGCAGTAGATGCTGGGCTCGGGCAT
518 AGTTCATTCCCAGTCTAAGATCGAACCGGACAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
2368334 GTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
583 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA---CCGAAGAACCTGACCG
* * * *
2368399 GCGGCTTTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
637 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
2368464 TGGTACTTGGCCCTTATATTGG-CCCCTGATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
702 TGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
2368527 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
766 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2368592 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAAATTTTTTGTGCA
831 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
2368652 TGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGATCCAAAACTCTTTTCGAAAAATTT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAAACTCCTTCCGAAAAAATT
* * **
2368717 TTGAAAAATCCCGAACCGTAAAAAGGTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
65 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
2368782 ATGAAAATTCACGTGAAGGCTTAA-GGAGCCATTCTATGAATTTAGAAGGCATAAAAATGGTATT
130 ATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * * * *
2368846 GCCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTACGCA
194 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * **
2368911 TCCTGTCTCTCTGGCCGGCGTAGT----GTCCG--C-CC-GCCCGCTCATTTCGTCAATTGGCTT
259 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
** * *
2368968 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTT--GG--TCAGGATCA
324 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGAATG-GGGTTGCGGCAGCAGGATTA
* * * * * * *
2369028 GTAG--CAC-GA--GAGACTCG-GCGATACCCGACTT--G-AT-CC-ACCCTTTGG-CGGCTGAG
387 GTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
2369081 CG-CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--TAAGCAT-CG
452 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* **
2369142 GAGTTCATTCCCA---TATGATCGAA--GGATGA-GGTTGC-GCAGCACATGCTGGGCTC-GGCA
517 GAGTTCATTCCCAGTCTAAGATCGAACCGGACAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*** * * * *
2369199 T-TGCTGGTGTACTATATTTTTCTTTGTC-GAGCACTCATCTGCGCGGACGAACCTGACC-AGCG
582 TGTGCTGGTG--CCGCATTTTTCTTCGTCGGGGCAC-CATC-AC-C-GAAGAACCTGACCGA-CG
* * * * *
2369261 GCATTGAGGTTCTGAGCGAT-AGGGGGGCTGGGGGTTGTGCGCACATGATTGTGCGAT-GGTGCT
640 GCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGA-TGTGCGATGGGTGCT
* *
2369324 GGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAA
703 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
2369388 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTTT
768 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
2369452 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGTA
833 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ** *
2369509 TGCCAACACAAAATACAAGGATCACCGTCT-CCCAGCATTGGGGGCCGACCCAACTCCTTTCG-A
1 TGCCAACA-AAAATACAAGGATCA-CGTCTACCAAG--TTTGGGG-C-A-AAAACTCCTTCCGAA
* * * *
2369572 AAAA-TTT-AAAAATCCCGAACAGCAAAAAGTTTTGAAAAGTCGTGAAAAACCAGAAAACAAGTC
59 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCGTGAAAAA-TAGAAAACGAGTC
*
2369635 GTCTTGCCATGAAACTTCATGTGAAGGGCTTAAGGGACCATTGTATTGAATTTACAAAGCCACCT
122 GTCTTGCCATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTA-TGAATTTAC-AAGCCA--T
* * *
2369700 AAAAATGGGCAGTGGGCCA-CCATAGAAATATGAAAGATGTACCTAAACCCACCTACCACCCCTA
182 AAAAAT-GGCA-TTGG-CATGC--AGAAATATG-AAGATGTGCCTAAACCCACCTACCA-CCCTA
* ** * *
2369764 TCGATCCCACAGCTTGCGCATCCCG----TCT-GCC--C---GT--CCTTCTGCCCGTCTG--C-
240 TCGAT-CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCG
* * * *
2369814 C-CGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCCAAGATC-AGACCGGACCA-
304 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGA--AT
** * * * * * * *
2369876 AAGGTTACAGCAGTAGGA-T-G-GGCACGCAGAGGGGGACCTGGCCGATCCCCGGCCTTGCGCAT
366 GGGGTTGCGGCAGCAGGATTAGTAGCACACAGAGGGGGACCCGACCGATCCCCGG-CTTGCGCAT
* * * * *
2369938 CCACGCCCTTCATGGGCCAGCTGAAGCGAACTCGCACAACTCGTTTCGTGGGTTAACTTAGGGCA
430 CC-CGCCCCTC-T-GGCCGGCTG-AGCG--CCCGCAC-GCTCGTTTCGTGGGTTGACTTA-GGCA
* *
2370003 TACAGAGTTCATTCCCAGTCTAAAGCATACGGAGTTCATTCCCAGTCTAAGAATC-AGACCAGAC
487 TACGGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGA-ACCGGA-
* * * **
2370067 CAAGGGTTTGCGACAGGCACATGCTGGGGCTGGGGCCATCTGCTGGTGAAGCA-TTTTCTTCGTC
548 CAAGGG-TTGCGGCA-GCACATGCT-GGGCTCGGG-CATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
2370131 GGGGCACAATCGCCGAAGGATCGCCCAGATGAACTTGACCGACGTGCATTGGGGTTCCGA-TATC
609 GGGG--C-A---CC-----ATC-ACC-GAAGAACCTGACCGACG-GCATTGGGGTTCCGACGATC
* * * *
2370195 GGGTGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGTCCCTTTATATTGG
660 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGG
*
2370260 CCCCCTTATCCCGTCATCAAACCTTCGAGAAACTCACAGCCCCTTAAAAGAGCATTTGAGATTTT
724 CCCCC-TATCCC-TCATCAAACC-TCGAG-AACTCACACCCCCTT-AAAGAGCATTTGAGATTTT
*
2370325 ACAGGCTTTGCTGCCAGTAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAATGGTCA
784 ACAGG-TTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCA
*
2370390 CAAAAATCTTGTACACTTTTTGAGTTTTTAGCTG-ATTTTTTTGTGCA
846 C-AAAATCTTGTACAC--TTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * *
2370437 TGCCAAAAAAAAAACAAGGATCACGTCTACAAAGTTTGGGGCTAAAA-TTCTTTCAAAAAAATTT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
* * ** * * *
2370501 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTCGCCA
66 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
2370566 TGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
131 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
2370631 CATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
196 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
2370696 CTGCCTCTCTGGCCGGCATAGTGCCCGCCCACCCGCCAGCCCGCTCATTTCATCAGTTGGCTTAG
261 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * ** *
2370761 GCATACAGAGTTCATTCCCTGCCTAAGATCGAACTGGACCA-AGGGTTGCGGCAGCAAGATCGGC
326 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGA--ATGGGGTTGCGGCAGCAGGATTAGT
* * * ** *
2370825 AGCACACAGAGGGGGACCC-AGTCGATCCCCGACTTGTGCATCCCGTGCCTCTGGCCGGTTGAGC
389 AGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
2370889 TCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGG
453 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * ** * ** * *
2370954 AGTTCATTCCTAGTCTAAGATCGGACCAAACCGAA-GGTCGCGATAGCACATGCCGGGCTTGGGC
518 AGTTCATTCCCAGTCTAAGATCGAACCGGA-C-AAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** ** * * *
2371018 ATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCC-AGAGAACTTGACCGGCGGCATT
581 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGA-AGAACCTGACCGACGGCATT
* * * * *
2371082 GGGGTTCCGATGAT--AGGGGGTCGGGGGAGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACT
645 GGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2371145 TGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
709 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
** * *
2371210 TTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATAGGGACACTTTTTTCTA
774 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
2371275 ATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTTTGCA
839 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
2371327 TACCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
*
2371392 TAAAAAATCCCGAACCGCAAAAAG--TT-----T--TGAAAAATAGAAAACGAGTCGTCTTG-CA
66 TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
2371447 CTAAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTG
131 -TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
2371512 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
195 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2371577 CCCGTCTCTCTGGTCGGCGTAGTGCTCGCCCGCCCG-CT------T-GTTTCGTCGGTTGGCTTA
260 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
2371634 GGCATACGGAGTTCATTCCCAGTCTAGGATTGGACCGGATTGAGGGTTGTGGCAGCAGGATCAGC
325 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAATG-GGGTTGCGGCAGCAGGATTAGT
*** * * * *
2371699 AGCATGTAGAGGGGGACTCGACCGATCCCTGGCTTTCGCATCCCGCCCCTCTGGCCGGTTGAGCG
389 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
2371764 CCCGCACACTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAATC-AAGCATACGGA
454 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
2371828 GTTCATTCCCAGTCTATGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCAT
519 GTTCATTCCCAGTCTAAGATCGAACCGGA-CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** ** * * *
2371893 GTGCTGGTGCCGCATTTTT-TTCACCCTGGCACGATCGCCAGAGCATCGTCAGAGAACCTAACTG
583 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C--A-C--CG--A-AGAACCTGACCG
* * * *
2371957 ACGGCATTGGGGTTCCGGCGGTTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
637 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
2372022 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTAA
702 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
2372087 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
767 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* ** *
2372152 TTTTCAAATTGTCACAAAATCTTACACACTTCGAGTTTTTACCTGAA-TTTTTTGTGCA
832 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
2372210 TGCCAACAACAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAA-GCCTACCGAAAAAATT
1 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAAACTCCTTCCGAAAAAATT
** *
2372274 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
65 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* ** *
2372339 ATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAAAGGCATTG
130 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2372404 GCATGCAAAAATATGAGGATG
195 GCATGCAGAAATATGAAGATG
2372425 CGCATCCCGT
Statistics
Matches: 4690, Mismatches: 590, Indels: 502
0.81 0.10 0.09
Matches are distributed among these distances:
850 4 0.00
851 3 0.00
852 47 0.01
853 10 0.00
854 7 0.00
855 60 0.01
856 2 0.00
857 13 0.00
858 133 0.03
859 163 0.03
860 40 0.01
861 39 0.01
862 27 0.01
863 17 0.00
864 199 0.04
865 357 0.08
866 40 0.01
867 43 0.01
868 16 0.00
869 81 0.02
870 8 0.00
871 28 0.01
872 32 0.01
873 98 0.02
874 166 0.04
875 4 0.00
876 2 0.00
877 2 0.00
878 3 0.00
879 4 0.00
880 29 0.01
881 160 0.03
882 182 0.04
883 115 0.02
884 203 0.04
885 12 0.00
886 6 0.00
887 19 0.00
888 21 0.00
889 14 0.00
890 54 0.01
891 281 0.06
892 351 0.07
893 66 0.01
894 16 0.00
895 83 0.02
896 191 0.04
897 8 0.00
898 38 0.01
899 13 0.00
900 26 0.01
901 64 0.01
902 269 0.06
903 33 0.01
904 18 0.00
905 5 0.00
906 3 0.00
907 9 0.00
908 1 0.00
909 2 0.00
910 17 0.00
911 11 0.00
912 24 0.01
913 20 0.00
914 70 0.01
915 48 0.01
916 23 0.00
917 20 0.00
918 22 0.00
919 40 0.01
920 48 0.01
921 67 0.01
922 66 0.01
923 13 0.00
924 63 0.01
925 24 0.01
926 82 0.02
927 31 0.01
928 36 0.01
929 25 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (890 bp):
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAATGGGGTTGCGGCAGCAGGATTAGTAG
CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGAACCGGACAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGAACCTGACCGACGGCATTGGGGTT
CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
Found at i:2370038 original size:27 final size:27
Alignment explanation
Indices: 2370000--2370052 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
2369990 TTAACTTAGG
2370000 GCATACAGAGTTCATTCCCAGTCTAAA
1 GCATACAGAGTTCATTCCCAGTCTAAA
*
2370027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2370053 GAATCAGACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCAGTCTAAA
Found at i:2370950 original size:26 final size:26
Alignment explanation
Indices: 2370920--2370972 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2370910 GTTGACTTAG
2370920 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2370946 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2370972 G
1 G
2370973 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:2375388 original size:26 final size:26
Alignment explanation
Indices: 2375352--2375404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2375342 GTTGACTTAG
2375352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2375378 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2375404 G
1 G
2375405 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2378053 original size:26 final size:26
Alignment explanation
Indices: 2378017--2378069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2378007 GTTGACTTAG
2378017 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
2378043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2378069 G
1 G
2378070 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:2380512 original size:900 final size:889
Alignment explanation
Indices: 2378752--2380880 Score: 2882
Period size: 900 Copynumber: 2.4 Consensus size: 889
2378742 ACTTAGGCAT
* *
2378752 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCA-TCTAAGAT-GGACC-GA-CGAGGGTTGCGGCAGCACATGCTAGGCTCG
* * * *
2378817 GGCATGTGCTGGTGCTGCATTTTTCTTT-GCCTGGGCACAATCACCGGAGCATCGTCGGAGAACC
62 GGCATGTGCTGGTGCCGCATTTTT-TTTCGCCGGGGCACCATCACCGGAGCATC-CCGGAGAACC
* * * *
2378881 TTACCGACGGCATTGGGGTTTTGGCCATCGGGGGG-CGGGGGGTGTGCGCACATGATGTACGATG
125 TGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
2378945 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
2379010 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTGAAATGGGGA
255 -TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-ATTAAAGTGTCTGAAATGGGGA
2379075 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCAT
318 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCAT
* * *
2379140 GACAACAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTA
383 GACAACAAAAATACAAGGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTA
* * *
2379205 AAAAATCTCGAACCGTAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
448 AAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGGGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
2379270 AAACTTCACGTGAAGGCTTAAGGGACCATTGTGCGAATTTACAAGCCATAAAAATGGCATTGGCA
513 AAACTTCACGTGAAGGCTTAAGGGACCATCGTACGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
2379335 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCC
578 TGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
2379400 GTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCTCCTGCCCGCTTGTTTCATCAGTTGGCTTAGGC
643 ATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCTGCCCGCTTGTTTCATCAGTTGGCCTAAGC
* * *
2379465 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCTGATAGCAAGATTGGTAGC
708 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTGATAGCAAGATCGGTAGC
** * * **
2379530 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGACCGGTCGAGCCCGC
773 ACACAAAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGACCGGTCGAGCCCGC
*
2379595 ACGCTTGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAG
838 ACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCT--G-AG
* *
2379650 ACGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGTGGCAGCACAAGCTAGGCTCG
1 ACGGAGTTCATTCCC-ATCTAAGA-TGGACC-GA-CGAGGGTTGCGGCAGCACATGCTAGGCTCG
* * * *
2379715 AGCATGTGCTGGTGCCGTATTTTTTTTCCCCGGGGCACCATCATCGGAGCAATCACCGGAGAACC
62 GGCATGTGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCATCACCGGAGC-ATC-CCGGAGAACC
* * * *
2379780 TGACCGACGACATTTGGATTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
125 TGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
2379845 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCTCACCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
2379910 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGAC
* *
2379975 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATG
319 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATG
* *
2380040 CCAACAAAAATACAAGGATCACGGCTAACAAGTTTGGGTCCAAAACTCCTTCCAAAAAAATTTTA
384 ACAACAAAAATACAAGGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTA
* *
2380105 AAAAATC-CTGAACCGTAAAAA-TTTTCAAAAATTGGGAAAAATAGAAAATGAGTCGTCTTGCCA
448 AAAAATCTC-GAACCGTAAAAAGTTTT-AAAAATCGGGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2380168 TGGAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGG
511 TGAAACTTCACGTGAAGGCTTAAGGGACCATCGTACGAATTTACAAGCCATAAAAATGGCATTGG
2380233 CATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC-TC
576 CATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
2380297 CCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTC-GCCCG-TTGGTTTCATC-GATTGGCC
641 CCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-TCCTGCCCGCTT-GTTTCATCAG-TTGGCC
* * * * * * * *
2380359 TAAGTATACGAAGTTCATTCCTAGTCTATGATC-GATCAGATCGAGGGTTAC-GGTAGTAGGATC
703 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CTGATAGCAAGATC
* * ** *
2380422 GGTAGCACACAAAGGGGGACCTGATCGATCCCCGACTTGTGCATCCCACCCCTCT-AGTCGG-CT
767 GGTAGCACACAAAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGA-CCGGTC-
* * * * *
2380485 GAGCGCCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAG
830 GA--GCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTGAG
* * *
2380547 ATC--AG---A----C--C------GGA-C--CGAGGGTTACGGGAGCACATGCTGGGCTCGGGC
1 A-CGGAGTTCATTCCCATCTAAGATGGACCGACGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
* * * * * *
2380592 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCCCAGAGAACCTGACC
65 ATGTGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCATCACCGGAGCATCCCGGAGAACCTGACC
* * * * *
2380657 GGCGGCACTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGTGTGCGCGCATGATGTGCGATGGGT
130 GACGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGT
*
2380722 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
* * * *
2380787 AAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATCGAGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACAC
2380852 TTTTTTCAAATGGTCACAAAATCTTGTAC
321 TTTTTTCAAATGGTCACAAAATCTTGTAC
2380881 TTTTGGTTCC
Statistics
Matches: 1100, Mismatches: 110, Indels: 65
0.86 0.09 0.05
Matches are distributed among these distances:
872 30 0.03
873 15 0.01
874 147 0.13
875 95 0.09
878 1 0.00
879 3 0.00
886 1 0.00
889 1 0.00
893 1 0.00
896 2 0.00
897 8 0.01
898 170 0.15
899 301 0.27
900 325 0.30
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (889 bp):
ACGGAGTTCATTCCCATCTAAGATGGACCGACGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCATCACCGGAGCATCCCGGAGAACCTGACCG
ACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGACAACAA
AAATACAAGGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTTAAAAATCGGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATCGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCTCCTGCCCGCTTGTTTCATCAGTTGGCCTAAGCATACGAAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTGATAGCAAGATCGGTAGCACACAAAG
GGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGACCGGTCGAGCCCGCACGCTCGT
TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTGAG
Found at i:2381364 original size:26 final size:26
Alignment explanation
Indices: 2381334--2381383 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2381324 GACTTAGGCA
2381334 TACGGAGTTCATTCCCAATCTAAGCT
1 TACGGAGTTCATTCCCAATCTAAGCT
* *
2381360 TACGGATTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
2381384 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCT
Found at i:2382265 original size:26 final size:26
Alignment explanation
Indices: 2382236--2382288 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2382226 GTTGACTTAG
2382236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2382262 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2382288 G
1 G
2382289 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2384131 original size:185 final size:184
Alignment explanation
Indices: 2383811--2384236 Score: 577
Period size: 185 Copynumber: 2.3 Consensus size: 184
2383801 GTTGGCTTAG
* * *
2383811 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTCCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTACGGCAGCAGGATCGGCA
** * * * * * *
2383876 GCACGCAGAGAGGGACCCGGTCGATCCCTGGCTTACGCATCCCGCTCTTCTAGCTGGCTGAGCGC
65 GCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCAC
*
2383941 CCGCACACTCG-TCTCGTGTGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
130 CCGCACACTCGTTC-CGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
* * * **
2383996 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTACGGCAGCAGGATCGGCA
* * *
2384061 GCACGCAGAG-GGAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCA
65 GCACGCAGAGAGG-GACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCA
* *
2384125 CCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 CCCGCACACTCGTTCCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
* *
2384181 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCTGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTACGGCAGCA
2384237 CATGCTGGGC
Statistics
Matches: 210, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
184 2 0.01
185 205 0.98
186 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTACGGCAGCAGGATCGGCAG
CACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCACC
CGCACACTCGTTCCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
Found at i:2384184 original size:26 final size:26
Alignment explanation
Indices: 2384155--2384207 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2384145 GTTGACTTAG
2384155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2384181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2384207 G
1 G
2384208 ATTGGACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2386112 original size:157 final size:156
Alignment explanation
Indices: 2385741--2386130 Score: 478
Period size: 158 Copynumber: 2.5 Consensus size: 156
2385731 CCCGCCCGTC
* * * *
2385741 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTAATTCCCAGTCTAAGATTGGA
* ** * * * *
2385806 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAAAGGCGGACCCGACCGATCCTCGGCT
65 CCGGACCGAGGGTAACGGCAGAAGAATCGGCAGCACACAAAGGCGGACCCGACCGATCCCCGGCT
*
2385871 GCGCATCCTGCCTCTCAGGCCGACTGAG
130 GCGCATCC-GCCCCTCAGGCCGACTGAG
* * **
2385899 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCTGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTAATTCCCAGTCTAAGATTGGA
* **
2385964 GCGGACCGAGGGTAACGGCAGAAGAATCGGCAGCACGTAGAAGG-GGACCCGACCGATCCCCGGT
65 CCGGACCGAGGGTAACGGCAGAAGAATCGGCAGCACACA-AAGGCGGACCCGACCGATCCCCGG-
* * * * *
2386028 TTGTGCATCC-CCCCTCTGGTCGGCTGAG
128 CTGCGCATCCGCCCCTCAGGCCGACTGAG
* *
2386056 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTAACTCCCAGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTAATTCCCAGTCTAAGATTGGA
2386121 CCGGACCGAG
65 CCGGACCGAG
2386131 TGTTGTAGCA
Statistics
Matches: 198, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
157 81 0.41
158 105 0.53
159 12 0.06
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (156 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTAATTCCCAGTCTAAGATTGGAC
CGGACCGAGGGTAACGGCAGAAGAATCGGCAGCACACAAAGGCGGACCCGACCGATCCCCGGCTG
CGCATCCGCCCCTCAGGCCGACTGAG
Found at i:2387629 original size:16 final size:16
Alignment explanation
Indices: 2387608--2387638 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2387598 GGCCAGCGTA
*
2387608 CTGCCCGTCCGCTCGC
1 CTGCCCGCCCGCTCGC
2387624 CTGCCCGCCCGCTCG
1 CTGCCCGCCCGCTCG
2387639 TTTCATCAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.58, G:0.26, T:0.16
Consensus pattern (16 bp):
CTGCCCGCCCGCTCGC
Found at i:2389607 original size:26 final size:26
Alignment explanation
Indices: 2389577--2389626 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2389567 GACTTAGGCG
*
2389577 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCAATCCCAGTCTAAGCA
*
2389603 TACGGAGTTCAATCCCAGTTTAAG
1 TACGGAGTTCAATCCCAGTCTAAG
2389627 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCAATCCCAGTCTAAGCA
Found at i:2391387 original size:26 final size:26
Alignment explanation
Indices: 2391351--2391401 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2391341 GTTGACTTAG
2391351 GCATACAGAGTTCATTCCCAGTCTAT
1 GCATACAGAGTTCATTCCCAGTCTAT
*
2391377 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
2391402 AGATCGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAT
Found at i:2394693 original size:872 final size:874
Alignment explanation
Indices: 2385899--2397274 Score: 12714
Period size: 872 Copynumber: 13.0 Consensus size: 874
2385889 GCCGACTGAG
* * * * * * * * *
2385899 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCTGTCTAAGATCAGA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * ** * * * * * **
2385964 GCGGACCGAGGGTAACGGCAGAAGAATCGGCAGCACGTAGAAGGGGACCCGACCGATCCCCGGTT
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* * *
2386029 TGTGCAT-CC-CCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
2386092 ACAGAGTTAACTCCCAGTCTAAGATTGGA-CCGGACCGAGTGTTG-TAGCAGCACATGCTGGGCT
196 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGA-CAGCACATGCTGGGCT
**
2386155 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGATGGGG---CA----C----CATCGTCGGAGAAC
260 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* *
2386209 CTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGTCGGGGGGTGTGCGCACCTGATGTGCGA
325 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
** *
2386273 TGGGTGCTGGTACTTGGCCCTTATATTCTCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACC
390 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
2386338 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGAAGCCATTAAAGTGTTTGAAATGTG
455 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * * *
2386403 GACACTTTTTTCAAATGCTCCCAAAATCTTGTACCCTACGAGTTTTTAGCTGAAATTTTTTGTGA
520 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * *
2386468 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCAGGCCAAAAATCCTTCCAAAAAAATT
585 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * * * *
2386533 TTAAAAAATCCCGAGCCGCAAAAAGTTTCAAAAATCATCAAAAATAGATAATGAGTCGTCTTGCC
650 TTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2386598 ATGAAACTTCACGTGAAAGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
715 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
2386663 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
780 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2386728 CCTGTCTCTCTGGTCGACGTAT--T-------
845 CCCGTCTCTCTGGCCG--GTATACTGCCCGCC
*
2386751 -GCCCG--C-C-C-----GTC---T-GC-----C-T-----G------CCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
2386785 CCAGACCAAGGGTTGCAGTAGCAGGATCGACAACACACAGAGGGGGACCCGGTCGATCCCCGAC-
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* *
2386849 TGCGCATCCCTCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
2386914 ACGAAGTTCATTCCCAGTTTAAGCATATGCAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
196 ACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C---CCGAACCGAG
* * * * *
2386979 GGTTGCGACAGCACATGCTAGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACC
236 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * * * * *
2387044 ATCATCGGAGCATC-ACTGGAGAACCTGATCGGCAGCATTGGGGTTCCGATGATTGGGGGGGTCG
301 ATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCG
2387108 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCC
365 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2387172 TCATGAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAG
430 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
2387237 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
495 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2387302 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAGGTTTGG
560 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* * * * *
2387367 GGCCAAAAATTCTTCCAAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATTGTG
625 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTG
* *
2387431 AAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGA
689 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * *
2387496 ATTTACAAGCCATAAAAATGGCATGGGCACATAGAAATATAAAGATGTGCCTAAAGCCA-CTCAC
754 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-AC
* * *
2387560 CGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTACTGCCCGTCCGCTCGCC
818 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-GTA-T--AC-T--GCCCGCC
* * * * *
2387625 TGCCCGCCCGCTCGTTTCA-TCAGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAG
1 CGCCCGCCCGCTCATTT-AGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * * * * *
2387689 ACCAGACCGAGGGAAGCGGTAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCGCCGGC
65 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGAC
* * * *
2387754 TTCCGCATCCCGCCCCTCTGGCCGACTGAGCCCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
2387819 TACGGAGTTCATTCCCAATCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGCACATGCTAGGCT
195 TACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGGCT
* ** *
2387883 CGGGCATGTGCTGGTGTCATATTTTTCTTCGCTGGGGCACCA---TC---G---C--CGGAGAAC
260 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * *
2387937 CTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
325 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
2388002 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
390 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
2388067 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTG-AATGGG
455 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
2388131 GACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTCTTT-GCTGAATTTTTTTGTT
520 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTGTG
2388195 CATGCCAACAAAAATACAAGGATCACATCTACC-A-------GCCAAAA-TGCCTTCCGAAAAAA
584 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAA
* * *
2388251 TTTTAAAAAAT-TCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
648 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
2388315 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * *
2388380 TCGGCACATAGAAATATGAAGATGTTCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
2388445 CATCTCGTCTCTCTGGCCGGCGTAGTACCAGCCCGCC
842 CATCCCGTCTCTCTGGCC-G-GTA-TA-CTGCCCGCC
* * * * *
2388482 TGCCCGCCCAACCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCGGTCTAAGAT
1 CGCCCG--C--CCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * ** ** * *
2388547 -GAGACTGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACATAGAGGGGGAGCTGATCGATCCC
62 CG-GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * * *
2388611 CGTCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTCGACGTA
126 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
**
2388676 GGCATACGGAGTTCATTCCCAACCTAAGCATACGGAGTTTATTCCCAGAATAAGATCGGACCAGA
191 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC----------C-G---A-A
* * * * *
2388741 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAG
231 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* ** * * * **
2388806 TCACCATCACCGGAGCATCATCGGAGAATCC-GACCGGTGGCATTGAGGTTCCGGTGATCGA-GG
296 GCACCATCGTCGGAGCATCGTCGGAGAA-CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGG
*
2388869 GGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
360 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2388934 TATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
424 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2388999 TGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAC
489 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
2389064 ACTTCCAGTTTCTAGCTGAATTTTTTTGTGCATG-C--C----A-ACAA-GATCACGTCTACCAA
554 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
* * * * * *
2389120 GTTTGGGGCCAAAACACCTTTCGAAAAAATTTT-AAAAATCCCGAACTGCAAAAAGTTTCAAAAA
619 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAA
* * * ** *
2389184 TTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGCCTTAAAAGACCATTC
684 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
2389249 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
749 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* **
2389314 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCCGCC
814 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* *
2389375 CGCCCGTCCGCCTGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGCCCG--C-CC-G--C--TCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
2389440 AGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCAAT
58 AGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
** * * * * * * *
2389505 CTTCTACTGGAGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCATTTCATGGGTTGAC
123 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
2389570 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTTTAAGATCGGACC
188 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----A-CCC-------GA----ACC
* * * * *
2389635 GGATCGAGAGTTTCGATAGCACATGCTTGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCGCC
233 -GA--G-G-GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * * *
2389700 GGGGCACCATCGTCGGAGCATCGTCAGAGAACCTAACCAGCGGCATTGGGGTTCCAACGATCG-G
293 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAG
**
2389764 GGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
358 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
2389829 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
423 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2389894 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTTAAATGGTCACAAAATCTTGTA
488 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
2389959 CACTTCGAGTTTCTAGCTGAA-TTTTTTGATGCATGCCAAAAAAAATACAAGGATCACGTCTACC
553 CACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACATCTACC
* * * * * *
2390023 AAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC-AGGCCGCAAAGAGTTTCCA
617 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCGA
* *
2390087 AAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCA
681 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * **
2390152 TTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCACAAATATGAAGATAAGCCTAAACC
746 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * **
2390217 CACCTACCACCCTATCGATCGACAGTTTGCGCATCCCGTCTCTCTTGCCGGCGTACTGCCCGCC
811 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* * * *
2390281 CGCCCGCCTGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGAT
1 CG--C-CC-GCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
2390346 TGGACC-GAACTGAGGGTTACGGCAGCAAGATTGGCAGCACGTAGAGGGGGTCCGGGTCGATCCC
62 CGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * *
2390410 CGGCTTGCGAATCCC-CCCCTCTGGCCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTA
126 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* ** ** * **
2390474 GGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTC-ATTC---GGTTTCGGTAGCACATG
191 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA-CCCGAACCGAGGGTTGCGACAGCACATG
* * ** * *
2390535 CTGGGCTCGGGCATCTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGGCGGAGCATCATC
253 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC
* * * *
2390600 GGAGAACCTGACCAGCGGCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGGGTGTACGCACATG
318 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATG
* * * *
2390665 ATGTGCGATGGGTACTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCAAGAA
382 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
2390730 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
447 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
2390795 GAAATGGGGATAC-TTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTCAGGTGAATTT
512 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
**
2390859 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CAAAACTCCTTCTA
577 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
2390923 AAAAAATTTTAAAAAATC-CTGAACCATAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGT
642 AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT
* * * * * *
2390987 CGTCTTGTCGTGAAACTTCGCGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAA
706 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
2391052 ATGGCATTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
771 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
2391117 CTTGCGCATCTCGTTTCTCTGGCCGGCGTGGTGCCCGCCCACC
836 CTTGCGCATCCCGTCTCTCTGGCC-G-GT-AT-ACTGCCCGCC
* * * * * * **
2391160 CGCCCGCCCACTCGTTTCGTCGGTCGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAAA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * ** * *
2391225 TCGGACTGAGGGTTGCGACAATAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCC-AGC
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGA-C
* * * * * *
2391289 TTGTGCATCCTGCCCCTCTGGCCGACTGGGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
2391354 TACAGAGTTCATTCCCAGTCTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGA
195 TACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C------C-GA----ACCGA
* * * *** *
2391419 GGGTTGCGGCAGGACATGCTGGCCTCGGGCATGTGCTGGTGCTATATTTTTCTTCACCGGGGCAC
235 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * *
2391484 CATCG-CTGGAGCATCGTCGGAGAACCTGACAGACGGCATGGGGGTTCCGACGATC------G--
300 CATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC
*
2391540 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG--CCCTATCC
364 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
2391603 CTCATCAAACCTCCAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGGTGCCA
429 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
2391668 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
494 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** *
2391733 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTG
559 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
* * * * *
2391798 GAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG
624 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTG
2391863 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
689 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
2391928 ATTTACAAGCCATAAATATGGCATTGGCACGCAGAAATATGAATATGTGCCTAAACCCACCTACC
754 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * *
2391993 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCACG
819 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* * * ** * * *
2392049 CGCCCGCTCGCTCGTTTCA-TTGGTTCACTTAGGCATACGGATTTCATTCCCAGTGTAAGATCAG
1 CGCCCGCCCGCTCATTT-AGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * ** * * *
2392113 ATCAGACCAAGGGTTGGGGCTA-CAGGATCTACAGCACGCAGAGGGGAACCAGATCGAT-CCCTA
65 ACCAGACCGAGGGTTGCGGC-AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGA
* * * * *
2392176 GCTTGCACATCCCACCCCTCTGGCCGGCTAAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGG
129 -CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
2392241 CTTACGGAGTTCATTCCCAGTCTAAGATC-GACCCGGACCGAGGGTTGCGGCAGCACATGCTGGC
193 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
2392305 CTTGGGCATGTGCTGGGGCCGCATTTTTCTTCGATGGCGCACCA---TC---G---C--CGGAGA
258 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
2392359 ACCTGACCGACGGCATTGGGGTTCCGACGATC-ATGGGGCCGGGGGGTGTGTGCACATGATGTGT
323 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
2392423 GATGGGTGCTGGTACTTGGCCCTTTTATTGG-CCCCTAATCCCTCATCAAACCTTGAGAACTCAC
388 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
2392487 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAATTTTTGAAAT
452 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2392552 GGGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2392617 TGCATGCCAACAAAAATACAAGGATCACATCTA-AAAGGTTGGGGCCAAAACTCCTTCCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2392681 ATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCT
647 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2392746 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTAGAAGCCATAAAAATGGCA
712 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2392811 TTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
777 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
2392876 TTTCCCATCTCTCTGGCCGGTATACTGCCTGCC
842 CATCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* * * * *
2392909 CACCCGCCTGCTCATTTAGTCGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
2392974 ACAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* * * * * * ** * **
2393039 CGCACATCCCGCCCCTTTGGCCAGTTAAGCGCCCGCACGCTCGTTTCGTGCATTCACTTATTCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * *
2393104 ACAGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTACGGCAGCACATGTTGGGCTC
196 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * *
2393168 GGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCATCGGAGAACC
261 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * *
2393233 TGAACGGTGGCATTGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
326 TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
2393298 GGATGCTAGTACTTAGCCCTTATATTGGCCTCCTATCCCTTATCAAACCTCGAGAACTCACACCC
391 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
2393363 CCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATTTTTGAAATGGGG
456 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
2393428 ACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCA
521 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * *
2393492 CCCCAACAAAAATACAAGGACCACATCTA-AAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTT
586 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
2393556 AAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
651 TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
2393621 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGG
716 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
2393686 TACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTC
781 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * **
2393751 CCGTCTCTCTGGCCGATGTACTGCCTACC
846 CCGTCTCTCTGGCCGGTATACTGCCCGCC
* ** * * * *
2393780 CACCCGCTTGCTCATTTCGTCGGTTCGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * * *
2393845 CCGGACCGAGGGTTGCGGCAATAGGATCGGCATCACGTAGAGGGGGACCCGACCGATCCCCGACT
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* * *
2393910 TGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
2393975 ACGGAGTTCATTCCCAATCTAAGATC-GACCCGAACTGAGGGTTGC-ACAGCATATGCTGGGCTT
196 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * *
2394038 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTGCACCATCGCCAGAGCATCG-CTAGAGAAC
261 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAAC
* * *
2394102 CTGACCGGCGGCATTGTGATTCCGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
325 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* *
2394167 ATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
389 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
2394232 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATTTTTGAAATGG
454 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2394297 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTG
519 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
2394362 CATGCCAACAAAAATACAAGGATCACATCTA-AAAGGTTGGGGCCAAAACTCCTTCCGAAAAAAT
584 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
2394426 TTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
649 TTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
2394491 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATT
714 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * **
2394556 GGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTT
779 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
2394621 TCCCGTCTCTCTGGCCGGTATACTGCCTGCC
844 TCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* * * * *
2394652 CACCTGCCTGCTCATTTAGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
2394717 ACAGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACT
66 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
* * ** ** * * **
2394782 TGCACATCCCGCCCCTCTGGTCGATTGAGCGCTGGCACGCTCGTTTCGTGCGTTCACTTATTCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
2394847 AGGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTC
196 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGGCTC
* **
2394911 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACC
261 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * **
2394976 TGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGTTGGGGGGTGTGCGCACATGATGTGCGAT
326 TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
2395041 GGATGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCC
391 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * * *
2395106 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCACTAAAGTATTTGGAATGGGG
456 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* **
2395171 ACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTCAGCA
521 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
2395236 TGCCAGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATT-CAAAAAAAT
586 TGCCA-ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAAT
* * * * *
2395299 TTTAAAAAATC-CTGAATCGTAAAATGTTTCGTAAATCATGAAAAATAGAAATCGAGTCGTCTTG
649 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * * *
2395363 CTATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAACCATAAAAATGGCCT
713 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
2395428 TGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGC
778 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
2395493 ATCCCGCCTCTCTGGCTGGTGTAGTGCCCGCC
843 ATCCCGTCTCTCTGGCCGGTATACTGCCCGCC
* * * * * *
2395525 TGCCCGCCCGCTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTTCCAATCCAAGATCGAA
1 CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * ** ** * *
2395590 CC-GAACTGTGGGTT---GC-GC---ATC-CCACCCCTC-TCGCCGG--CTGAGC-A--CCCGCA
66 CCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG-A
** * ** * * * * *** ***
2395640 CTAT-CG--TTTCG----T-GGGTTGACTTAG-GCATACGGA-G-TTAATTC-CCAG-T--C-TA
129 CT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * * *
2395689 AGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAG-ACCGAGGGTTACGACAGCGCATGCTG
191 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTG
** * * * *
2395753 GGCTTAGGCATCTGCTGGTGCCGTATTTATCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
256 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
2395818 GAACTTGACCAGTGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCCCATGATG
321 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG-CCGGGGGGTGTGCGCACATGATG
* *
2395883 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTC
385 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
2395948 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAA
450 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2396013 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
515 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
2396078 TCAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
580 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
2396143 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGACAAATAAAAAACGAGTCGTC
645 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2396208 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGG
710 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
2396273 CTTTGGCATGCTGAAATATGAATATGTACCTAAACCCACCTACCACTCTATCGATCCACGGCTTA
775 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
2396338 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACGCC
840 CGCATCCCGTCTCTCTGGCCG--GTA-T-ACTGCCCGCC
* ** *
2396377 CGCCCGCCCGTTCATTTCA-TC-GTTGGCTTAGGCATATAGAGTTCATTCCCTA-TCTATGAAT-
1 CGCCCGCCCGCTCATTT-AGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAG-ATC
* * * * * * * * * *
2396438 GGATCAGACAGA-CGTTGGGGCAG-AGGATCGACAGCACGTAGAGGGAGACCTGGTCGATCCCCA
63 GGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * ** * * *
2396501 ACTTGCGCATCCAGCCCCTCTGGTCGGCTGA--GCCCATAAGCTCGTTTTCATGGGTTGGCTTAG
128 ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAG
*
2396564 GCATACGGAGTTCATT-CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
192 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C------C-GA----AC
* * * * * * *
2396628 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATATGCT-GTACTGCATTTTTCTTTGCTGGGG
232 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * *** *
2396692 CACCATCGTCGGAGCATCGTCGGAGAACCTGATC-GCGGCATTAGGGTTTCGGTAATC-AAGGGG
297 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG
* *
2396755 CCGGGGGGTGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAT
362 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
2396820 CCCTCATCAAATCTCGAGAACTCACACCTCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGC
427 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2396885 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
492 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
2396950 TCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCAACCAAGCT
557 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * * *
2397015 AGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAACATC-CTGAACCGCAAAAAGTTTTGAAAATC
622 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATC
* * ** * *
2397079 ATGAAAAATAGAAAACGAGTCATCTCACCATGAAACTTCATGTGAA-GCTTAA-GGACCATTGGA
686 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
2397142 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAATATGAAGATGTACCTAAA-CCAAC
751 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACC
* * ** * * * ** *
2397206 GACAAATCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGTCGGCGTAGTGCGCCGCC
815 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATACTGC-CCGCC
2397267 CG-CCGCCC
1 CGCCCGCCC
2397275 ATTTCGTCTG
Statistics
Matches: 9073, Mismatches: 1098, Indels: 669
0.84 0.10 0.06
Matches are distributed among these distances:
820 6 0.00
821 62 0.01
822 64 0.01
824 1 0.00
827 2 0.00
828 2 0.00
831 2 0.00
832 1 0.00
833 1 0.00
834 1 0.00
835 1 0.00
838 2 0.00
839 1 0.00
842 2 0.00
843 2 0.00
847 154 0.02
848 510 0.06
849 3 0.00
850 6 0.00
851 45 0.00
852 69 0.01
853 12 0.00
854 5 0.00
855 1 0.00
856 3 0.00
857 18 0.00
858 9 0.00
859 495 0.05
860 554 0.06
861 585 0.06
862 13 0.00
863 67 0.01
864 6 0.00
865 7 0.00
866 6 0.00
867 2 0.00
868 6 0.00
869 200 0.02
870 200 0.02
871 730 0.08
872 922 0.10
873 407 0.04
874 26 0.00
875 416 0.05
876 171 0.02
877 166 0.02
878 4 0.00
879 10 0.00
880 71 0.01
881 2 0.00
882 1 0.00
883 2 0.00
884 3 0.00
885 2 0.00
886 1 0.00
887 67 0.01
888 7 0.00
889 190 0.02
890 24 0.00
891 106 0.01
892 103 0.01
893 370 0.04
894 33 0.00
895 352 0.04
896 219 0.02
897 496 0.05
898 251 0.03
899 106 0.01
900 3 0.00
901 76 0.01
902 206 0.02
903 1 0.00
904 6 0.00
905 115 0.01
906 275 0.03
907 2 0.00
908 2 0.00
909 2 0.00
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CGCCCGCCCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGAACCGAGGGTTGCGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGTATACTGCCCGCC
Found at i:2395700 original size:26 final size:26
Alignment explanation
Indices: 2395664--2395715 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2395654 GTTGACTTAG
2395664 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
2395690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2395716 CATCAGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:2396593 original size:25 final size:26
Alignment explanation
Indices: 2396564--2396615 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
2396554 GTTGGCTTAG
2396564 GCATACGGAGTTCATT-CCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2396589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2396615 G
1 G
2396616 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2398077 original size:26 final size:26
Alignment explanation
Indices: 2398047--2398096 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2398037 GACTTAGTCC
2398047 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
2398073 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2398097 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:2400094 original size:26 final size:26
Alignment explanation
Indices: 2400056--2400112 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
2400046 CTAAGATCGG
* *
2400056 ATCAGACCGAGGGTTACGGCAGCAGA
1 ATCAGACCAAGGGTTACAGCAGCAGA
* *
2400082 ATCAGACCAAGGGTTTCAGCAGCAGG
1 ATCAGACCAAGGGTTACAGCAGCAGA
2400108 ATCAG
1 ATCAG
2400113 TAGCATGCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.32, T:0.14
Consensus pattern (26 bp):
ATCAGACCAAGGGTTACAGCAGCAGA
Found at i:2401954 original size:867 final size:867
Alignment explanation
Indices: 2400366--2401969 Score: 2436
Period size: 867 Copynumber: 1.9 Consensus size: 867
2400356 GGGTTCCGAC
2400366 GATCGGGGGGCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 GATCGGGGGGCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
2400431 TGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCACTTAAAGAGTATTTGAGATTTTAC
66 TGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTAC
2400496 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
131 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
** * * * *
2400561 TCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACG
196 TCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTGATGCATGCCAAAAAAAATAAAAGGATCAAG
*
2400626 TCTACCAAGTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
261 TCTACCAAGTTGGGGCAAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
**
2400691 TTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGG
326 TCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGG
*
2400756 ACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTA
391 ACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTA
* * * * *
2400821 AACCGACCTACCACCCTATCGTTCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTAGTGCCC
456 AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCC
* * * *
2400886 ACTTGCCCGCCCACTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATC
521 ACTTGCCCGCCCACTCATTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATC
* * * **
2400951 AGACCGGACCGAGGGTTGCAGCAGTAGGCAGCACGCAAAGGGGGACCGGTTCGATCCCTGGCTTG
586 AGACCGAACCAAGGGTTGCAGCAGTAGGCAGCACGCAAAGGGGGACCCGACCGATCCCTGGCTTG
* * * ** * * *
2401016 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCCTTT
651 TGCATCCCGCCCCTCTGGCCGACTAAGCACCCAAACGCTCGTTTCACGGGTTGACTTAGGCCATA
2401081 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACCGAGG
716 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACCGAGG
2401146 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTATTCACCGGGGCACCA
781 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTATTCACCGGGGCACCA
2401211 TCACCGGAGAACCGGACCTGCA
846 TCACCGGAGAACCGGACCTGCA
* * * *
2401233 GATCGGGGGGGCC-GGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCTTTATG
1 GATC-GGGGGGCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
2401297 TTGGCCCCCTATCGC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
65 TTGGCCCCCTATC-CATCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTT
*
2401361 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
129 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
2401426 AATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTGGTGCATG-CAACAAAAATAAAAGGATCA
194 AATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTGATGCATGCCAAAAAAAATAAAAGGATCA
* * * *
2401490 AGTGTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAA
259 AGTCTACCAAG-TTGGGGCAAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
* * * *
2401555 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAA
323 GTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAA
* * *
2401620 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGC
388 GGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGC
* *
2401685 CTAAACCCACCTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACATAGTG
453 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTG
** * * *
2401749 -CC-C-T-CCCGCCTGCTCGTTTTATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAA
518 CCCACTTGCCCGCCCACTCATTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAA
* * * * *
2401810 ATCGGATCGAATCAAGGGTTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-
583 ATCAGACCGAACCAAGGG--T-T-GCAGCA-G-TAGGCAGCACGCAAAGGGGGACCCGACCGATC
* * *
2401874 CCTCGGCTTGTGCATCTCGCCCCTCTGGCCGACTAAGCACCCAAACGCTCGTTTCGCGGGTTGGC
642 CCT-GGCTTGTGCATCCCGCCCCTCTGGCCGACTAAGCACCCAAACGCTCGTTTCACGGGTTGAC
2401939 TTAGG-CATACAGAGTTCATTCCCAGTCTAAG
706 TTAGGCCATACAGAGTTCATTCCCAGTCTAAG
2401970 ATCAGACTGT
Statistics
Matches: 659, Mismatches: 68, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
862 61 0.09
863 1 0.00
864 2 0.00
865 3 0.00
866 72 0.11
867 428 0.65
868 92 0.14
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (867 bp):
GATCGGGGGGCCGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTGATGCATGCCAAAAAAAATAAAAGGATCAAG
TCTACCAAGTTGGGGCAAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
TCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCC
ACTTGCCCGCCCACTCATTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATC
AGACCGAACCAAGGGTTGCAGCAGTAGGCAGCACGCAAAGGGGGACCCGACCGATCCCTGGCTTG
TGCATCCCGCCCCTCTGGCCGACTAAGCACCCAAACGCTCGTTTCACGGGTTGACTTAGGCCATA
CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTGGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTATTCACCGGGGCACCA
TCACCGGAGAACCGGACCTGCA
Found at i:2402964 original size:26 final size:26
Alignment explanation
Indices: 2402928--2402980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2402918 GTTGACTTAG
*
2402928 GCATACAGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
2402954 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
2402980 G
1 G
2402981 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:2403885 original size:26 final size:26
Alignment explanation
Indices: 2403833--2403885 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2403823 ATTGACTTAG
* * *
2403833 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2403859 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2403885 G
1 G
2403886 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2404656 original size:26 final size:26
Alignment explanation
Indices: 2404620--2404672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2404610 GTTGACTTAG
**
2404620 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2404646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2404672 G
1 G
2404673 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2404931 original size:787 final size:791
Alignment explanation
Indices: 2403417--2405004 Score: 2332
Period size: 787 Copynumber: 2.0 Consensus size: 791
2403407 AAAATTTTAA
* *
2403417 AAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCATCTTGCCATGA
1 AAAATCTTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
* *
2403482 AACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
2403547 GCAGAAAGATGAAGATCTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCA
131 ACAGAAAGATGAAGATCTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCA
* * * *
2403612 TCTCTCTGGCCTGCGTAGTGCCCGCCCGTCCACTTGCCCGCTCGTTTTGTCGGTTGGCTTAGGCA
196 TCTCTCTGGCCTGCGTAGTGCCCACCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
2403677 TACGGAGATCGTTGCTAATCTAAGATCAGACCAAATCGAGGGTCATGGAAATAGGATCGACAGTA
261 TACAGAGATCATTCCTAATCTAAGATAAGACCAAATCGAGGGTCATGGAAATAGGATCGACAGCA
* ** * *
2403742 CGCAGAGGGGGACCCAGTCGATCCTCGACTTACGCATCTCGCCCCTCTGGTCGACTGAGTGCCCG
326 CGCAAAGGGGGACCCAACCGATCCCCGACTTACGCATCTCGCCCCTCTGGCCGACTGAGTGCCCG
* *
2403807 CGCACTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCTAGTTTAAGCATACGGAGTTC
391 CACACTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTC
* * *
2403872 ATTCCCAATCTAAGATCAGACCGGACCGAGGGTTCTGACAGCACATGCTGGGCTCGGGCTTGTGC
456 ATTCCCAATCTAAGATCAGACCAGACCGAGGGTTCTGACAGCACATGCTGGGCTCGGCCATGTGC
* ** * * *
2403937 TGGTGCGGCATTTTTCTTCATCGGGGCACCATCACCGGATCATCATTGGAGAACCTGACCGGCGG
521 TGGTGCCGCATTTTTCTTCATCGGACCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGG
* * *
2404002 CATTGGGGTTTCGGCGATTGGGAGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
586 CATTGGGGCTTCGGCGATCGGGAGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAG
* *
2404067 TACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAAGA
651 TACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCATTAAAAGA
**
2404132 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TAAAGTG-TTGAATGGGGACAC-TTTTT
716 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCTAAAATGGGGACACTTTTTT
2404194 CAAATGGTCAC
781 CAAATGGTCAC
* *
2404205 AAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1 AAAATCTTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
2404270 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
66 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
2404335 ACAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCA
131 ACAGAAAGATGAAGATCTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCA
* * * * *
2404400 TCTCTCTGGCC-GACGTAGTGCCCATCCGCCCGCCTGCCCGCTCGTTTCGTTGTTTGGCTTAGTC
196 TCTCTCTGGCCTG-CGTAGTGCCCACCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * ** * * * *
2404464 ATACAGAGTTTATTCCTAGTCTATGATAAGACCGGA-CAGAGGGTCGT-GATAGTAGGTTCGGCA
260 ATACAGAGATCATTCCTAATCTAAGATAAGACCAAATC-GAGGGTCATGGA-AATAGGATCGACA
* * *
2404527 GCACGCAAAGGGGGACCCAACCGATCCCCGACTTGCGCATC-CGCCCCTTTGGCCGGCTGAGTGC
323 GCACGCAAAGGGGGACCCAACCGATCCCCGACTTACGCATCTCGCCCCTCTGGCCGACTGAGTGC
* * * *
2404591 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGCATACGGAG
388 CCGCACACTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
* * * *
2404656 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGTGTTAC-GGCAGCACATGCTGGGCTCGGCCAT
453 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTT-CTGACAGCACATGCTGGGCTCGGCCAT
* ** *
2404720 GTGCTGGTGCCGTATTTTTCTTCATCGGACCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
517 GTGCTGGTGCCGCATTTTTCTTCATCGGACCACCATCACCGGAGCATCATCGGAGAACCTGACCG
* * * *
2404785 ACGGCATTGGGGCTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
582 ACGGCATTGGGGCTTCGGCGATCGGGAGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
*
2404850 CTAGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TACACAGCCCATT
647 CTAGTACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGAACT-CACA-CCCATT
2404914 -AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACA
710 AAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTAAAATGGGGACA
2404978 CTTTTTTCAAATGGTCAC
774 CTTTTTTCAAATGGTCAC
2404996 AAAATCTTG
1 AAAATCTTG
2405005 TACACTTTGA
Statistics
Matches: 711, Mismatches: 79, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
786 1 0.00
787 345 0.49
788 328 0.46
790 12 0.02
791 25 0.04
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (791 bp):
AAAATCTTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAAGATGAAGATCTGCCTAAACCCACCTACCACCCTAGCGATCCACGGCTTGCGCATCCCA
TCTCTCTGGCCTGCGTAGTGCCCACCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACAGAGATCATTCCTAATCTAAGATAAGACCAAATCGAGGGTCATGGAAATAGGATCGACAGCA
CGCAAAGGGGGACCCAACCGATCCCCGACTTACGCATCTCGCCCCTCTGGCCGACTGAGTGCCCG
CACACTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTC
ATTCCCAATCTAAGATCAGACCAGACCGAGGGTTCTGACAGCACATGCTGGGCTCGGCCATGTGC
TGGTGCCGCATTTTTCTTCATCGGACCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGG
CATTGGGGCTTCGGCGATCGGGAGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAG
TACTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCATTAAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCTAAAATGGGGACACTTTTTT
CAAATGGTCAC
Found at i:2407033 original size:26 final size:26
Alignment explanation
Indices: 2407003--2407055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2406993 GTTGGCTTAG
*
2407003 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
*
2407029 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
2407055 G
1 G
2407056 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:2407519 original size:26 final size:26
Alignment explanation
Indices: 2407480--2407536 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
2407470 CTTCTTCCAA
* * **
2407480 AAAAATTTTAAAAAATTTTGAACCAT
1 AAAAAGTTTAAAAAATCTTGAAAAAT
*
2407506 AAAAAGTTTCAAAAATCTTGAAAAAT
1 AAAAAGTTTAAAAAATCTTGAAAAAT
2407532 AAAAA
1 AAAAA
2407537 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTTGAAAAAT
Found at i:2407857 original size:99 final size:99
Alignment explanation
Indices: 2407686--2407885 Score: 337
Period size: 99 Copynumber: 2.0 Consensus size: 99
2407676 GCGCATCCCG
* * * *
2407686 TCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGTCAGCTCGTTTCGTCGGTTGGCTTAGGCATACG
1 TCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACG
2407751 GAGTTCATTCCCAGTCTAAGAATACGGAGTTCAT
66 GAGTTCATTCCCAGTCTAAGAATACGGAGTTCAT
* *
2407785 TCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACG
1 TCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACG
*
2407850 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
66 GAGTTCATTCCCAGTCTAAGAATACGGAGTTCAT
2407884 TC
1 TC
2407886 CCAGTCTAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 94 1.00
ACGTcount: A:0.16, C:0.31, G:0.25, T:0.28
Consensus pattern (99 bp):
TCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGAATACGGAGTTCAT
Found at i:2407879 original size:26 final size:26
Alignment explanation
Indices: 2407843--2407895 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2407833 GTTGGCTTAG
2407843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2407869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2407895 G
1 G
2407896 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2409730 original size:26 final size:26
Alignment explanation
Indices: 2409694--2409746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2409684 GTTGACTTAG
2409694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2409720 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2409746 G
1 G
2409747 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2409995 original size:34 final size:34
Alignment explanation
Indices: 2409927--2409998 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
2409917 ATGGGTGCTG
*
2409927 GTACTTGGCCCTTATATTGGCCCCCTATCCTCTT
1 GTACTTGGCCCTTATATTGGCCCCCTATCATCTT
2409961 GTACTTGGCCCTTATATTGGCCCCCTTAT-ATCTT
1 GTACTTGGCCCTTATATTGGCCCCC-TATCATCTT
2409995 GTAC
1 GTAC
2409999 ACTTCGAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 33 0.92
35 3 0.08
ACGTcount: A:0.14, C:0.32, G:0.15, T:0.39
Consensus pattern (34 bp):
GTACTTGGCCCTTATATTGGCCCCCTATCATCTT
Found at i:2410743 original size:813 final size:813
Alignment explanation
Indices: 2409173--2410769 Score: 2249
Period size: 813 Copynumber: 2.0 Consensus size: 813
2409163 TGGTCACAAA
* * *
2409173 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAAATACAAGGATCAT
1 ATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTGTGCATCCCAACAAAAAATACAAGGATCAC
* * * *
2409238 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCCCGAACCGCACAAAG
66 GTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * *
2409303 TTTCAAAAATCGTGAGAAATGAAAAACGAGTCGTCTCGCAATGAAACTTCACGTGAAGGCTTACA
131 TTTCAAAAATCGTAAAAAATGAAAAACGAGTCGTCTCGCAATGAAACTTCACATGAAGGCTTACA
* *
2409368 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGTAGAAATAATAAGATGTGCC
196 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTACAAATAATAAGATGTGCC
* *
2409433 TAAACTCACCAACCACCCGATCGATCCACGGCTTGCGCATCCAGTCCTCTGGCCGGTGTAGTGGC
261 TAAACCCACCAACCACCCGATCGATCCACGGCTTGCGCATCCAGTCCTCTGGCCGGCGTAGT---
* * *
2409498 CGCCCACCCACCCGCCCGCTCATTTCGGTTTGCTTAGTCATACGGAGTTCATTCCTAATCTAAGA
323 CGCCCACCCACCCGCCCGCTCA-TTCGATTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGA
* * * * * *
2409563 TCGAACCAGATTGAGGGTTGCAACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCC
387 TCGAACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCAAGCAAAGGGGGACCCGACCGATCCC
* * *
2409628 CAGCTTGCGCATATCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
452 CAGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* * *
2409693 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
517 AGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
* * * **
2409758 CCAAGGGTTGCGGCAGCCAATGCTAGGCTCGGGCATGTGCTGGTGTCATTTTTTTCTTCGTCGGG
582 CCAAGGGTTGCGGCAGCCAATGCTAGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGG
* * *
2409823 GCACCATCGCCGGAGCATCATCGAAGAACCTAATCGACGGCATTAGGGTTCCGACGATCGGAGGG
647 GCACCATCGCCGGAGCATCACCGAAGAACCTAACCGACAGCATTAGGGTTCCGACGATCGGAGGG
* *
2409888 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
712 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2409953 ATCCTCTTGTACTTGGCCCTTATATTGGCCCCCTTAT
777 ATCCTCTTGTACTTGGCCCTTATATTGGCCCCCTTAT
2409990 ATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATCCCAAC-AAAAATACAAGGATCA
1 ATCTTGTACACTTCGAGTTTGTAGCTGAA-TTTTTTGTGCATCCCAACAAAAAATACAAGGATCA
* *
2410054 CGTCTACCATGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
65 CGTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* *
2410119 GTTTCAAAAATCGTAAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
130 GTTTCAAAAATCGTAAAAAATGA-AAAACGAGTCGTCTCGCAATGAAACTTCACATGAAGGCTTA
* *
2410183 -AGGGACCATTGTATGAATTTACAGGCCATAAAAATGGTATTGGCATGTACAAAT-ATGAAGATG
194 CA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTACAAATAAT-AAGATG
* ** * * * * *
2410246 TGCCTAAACCCACCTACCTTCCTATTGATCCACGGCTTTCGCATCCCGTCTCTCTGGTCGGCGTA
257 TGCCTAAACCCACCAACCACCCGATCGATCCACGGCTTGCGCATCCAGTC-CTCTGGCCGGCGTA
* * ** *
2410311 GT-GCCCGCCCGCCCGCTTGTTTCA-TCGATTGGCTTAGGCATACGGAGTTCATTCC-AAGTCTA
321 GTCGCCCACCCACCCGCCCG-CTCATTCGATTGGCTTAGGCATACGGAGTTCATTCCTAA-TCTA
* * * * *
2410373 AGATCGGACCAGACTGAGGGTTGCAGCAGTAGGATCGACAGCAAGCAAAGTGGGACCCTACCGAT
384 AGATCGAACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCAAGCAAAGGGGGACCCGACCGAT
* * * * * *
2410438 CCCCGGCTTGCACATCCCGCCCCTTTGGCCGGCTGAGCGCCTGCACGCTCGTTTCATGGTTTGAC
449 CCCCAGCTTGCACATACCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGAC
* * * * * *
2410503 TTAAGCGTACGGAGTTCATTCCTAGTCTTAGCATACGGAGTTCATTTCTAGTCTAAGATCGGGCT
514 TTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
** * * *
2410568 GGACTGAGGGTTGCGGCAG-CACATGTTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCAC
579 GGACCAAGGGTTGCGGCAGCCA-ATGCTAGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCAC
* * * *
2410632 CGGGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACAGCGTTGGGGTTCTGACGATCGG
643 CGGGGCACCATCGCCGGAGCATCACCGAAGAACCTAACCGACAGCATTAGGGTTCCGACGATCGG
*
2410697 -GGGGACCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGG
708 AGGGG-CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
2410761 CCCCTATCC
772 CCCCTATCC
2410770 CTCATCAAAC
Statistics
Matches: 686, Mismatches: 85, Indels: 22
0.87 0.11 0.03
Matches are distributed among these distances:
812 8 0.01
813 372 0.54
814 13 0.02
815 3 0.00
816 4 0.01
817 255 0.37
818 31 0.05
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (813 bp):
ATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTGTGCATCCCAACAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
TTTCAAAAATCGTAAAAAATGAAAAACGAGTCGTCTCGCAATGAAACTTCACATGAAGGCTTACA
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTACAAATAATAAGATGTGCC
TAAACCCACCAACCACCCGATCGATCCACGGCTTGCGCATCCAGTCCTCTGGCCGGCGTAGTCGC
CCACCCACCCGCCCGCTCATTCGATTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGA
ACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCAAGCAAAGGGGGACCCGACCGATCCCCAGC
TTGCACATACCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAA
GGGTTGCGGCAGCCAATGCTAGGCTCAGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCAC
CATCGCCGGAGCATCACCGAAGAACCTAACCGACAGCATTAGGGTTCCGACGATCGGAGGGGCCG
AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
TCTTGTACTTGGCCCTTATATTGGCCCCCTTAT
Found at i:2413537 original size:26 final size:26
Alignment explanation
Indices: 2413501--2413561 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
2413491 GTTGACTTAG
2413501 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2413527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2413553 G-AT-CAGAGT
1 GCATACAGAGT
2413562 AGACTGAGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2414431 original size:26 final size:25
Alignment explanation
Indices: 2414395--2414470 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
2414385 GTTGACTTAG
2414395 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
2414421 GCATACGGAGTTCATTCCCAGTCT-A
1 GCATAC-GAGTTCATTCCCAGTCTAA
2414446 GCATACGAGTT-ATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
2414470 G
1 G
2414471 ACCAGACCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
23 11 0.23
24 7 0.15
25 7 0.15
26 23 0.48
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:2415353 original size:26 final size:26
Alignment explanation
Indices: 2415317--2415367 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2415307 GTTGACTTAG
*
2415317 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
2415343 GCATACAAAGTTCATTCTCAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
2415368 TGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:2416241 original size:26 final size:26
Alignment explanation
Indices: 2416211--2416263 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2416201 GTTGACTTAG
*
2416211 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* *
2416237 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2416263 G
1 G
2416264 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:2417141 original size:26 final size:26
Alignment explanation
Indices: 2417105--2417156 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2417095 GTTGACTTAG
2417105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2417131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2417157 AATCAGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2417611 original size:895 final size:893
Alignment explanation
Indices: 2412632--2421435 Score: 11421
Period size: 899 Copynumber: 9.8 Consensus size: 893
2412622 GTTGACTTAG
* ** * *
2412632 GCATACGGAGTTGATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
2412697 CTCGGGCTTGTGCTGGTACCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCACCGCAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCATCGCCGGAGCATCATCGGAG
* ** * ** * *
2412761 AACCTGGCCGGTGGCTTTGCAGTTCTGACGATCGGGGGGCC-GGGGG-GTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
2412824 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2412889 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2412954 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
2413019 GCATCCCAACAAAAATACAAGGATCACATCTAAAAAAGTTTGAGGCCAAAACTCCTTCC-AAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2413083 CATTTTCAAAAATCCCAAACCGCAAAAAGTTTCAAATATCCTGAAAAATAGAAAACGAGTCGTCT
454 -ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2413148 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2413213 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAT-CACGGCTTG
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTG
* * *
2413277 CGAATCCCGTCTCTCTGGCCGGCCTAGTGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCGTA
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** *
2413342 GGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAGACCTAGGGTTGCAGTAGCAGGATCGGC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATC-GC
* * * * * *
2413406 AGCACGTAAAGGGGGACCCGATCGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCCGACTGAGCG
773 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
2413471 CTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * * * * *
2413527 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTAGACTGAGGGTTGCAGTAGCAGATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
2413592 CTCAGGCATGTGCTGGTGCGGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
*
2413657 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-----G--GGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
2413715 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
2413780 CCCTTTAAAGAGCATTTGAGATTTTACAGG-TTCCTGCCAATAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
2413844 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
2413909 CATGCCAACAAAAATACAAGGATCACGTTTACCACGTTTAGGGCCAAAACTCTTTCCGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * *
2413974 TTTAAAAAATCCCGAACTGCATAAAGTTTCAAAAATTGTGAAAAATTGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
2414039 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
2414104 GGCACGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATACATGTCTTGCTCA
586 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
2414169 TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCACCTGCCCGCCTGCTCGTTTCATCGGTTGGCTT
651 TCCCGTCTCTCTGGCCGGCGTAGTG------C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
2414234 AGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAAGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * * *
2414299 CAGCACACAGAGGGGGACTCGATCGAT-CCTGAACTTGTGCATCCCACCCCTCTAGCCGGCTGAG
772 CAGCACGCAGAGGGGGACCCGACCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
2414363 CGCCCGCACACTCATTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
2414421 GCATACGGAGTTCATTCCCAGTCTAGCATACGAGTTATTCCCAGTCTAAGACCAGACCAGACCAA
1 GCATACGGAGTTCATTCCCAG--T--C-TA--AG--------A-TC--AGACC-G----GACCGA
* * * * *
2414486 GGGTTGCGACAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCAA
43 GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * * * **
2414551 CAACGTCGGAGCATCACCGGAGAACCTGACTGACGGCATTGGGGTTCCGATGATCGGGGGGCCGG
108 CATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-G
*
2414616 GGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
172 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2414681 TCATCAAATCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
237 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
2414746 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
302 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * * **
2414811 AGTTTTTAAC-GGATTTTTTATGTGCTTGCCAACAAAAATACAAGGATCAGGTCTAAAAAGTTTG
367 AGTTTTTAGCTGAATTTTTT-TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
2414875 TGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCCAGCAGCAAAAAGTTTCAAAAATCGTG
431 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
*
2414940 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
496 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
2415005 ATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
561 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
2415070 ATCCTATCAATCCATGGCTTGCGCATCCTGTCTCTCTAGCCGGCGTGGTGCCCGCCCGCCCACCC
626 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCC
* * * * * * * * * *
2415135 GCTCGTTTCATCAGTTGGCTCAGGCATACAGAGTTTATTCCCAATCTAATATCGAAACGGATTGA
687 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
* * * * *
2415200 GGGTTGTGGCAGCAAGATAGACAGCATGCAAAGAGGGACCC-AGCCGATCCCCGGCTTGCGCATC
752 GGGTTGTGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC
* * * * *
2415264 CTGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTT
815 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
2415329 CATTCCCAGTCTAA
880 CATTCCCAGTCTAA
** * * * * * *
2415343 GCATACAAAGTTCATTCTCAGTCTATGATCGGATCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2415408 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
* ** * * * *
2415473 ACCTGACCGGCGTAATTGAGGTTCCGGCGATCGGGGGGCCGGGGGGTTATGCGCACATGATTTAC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* *
2415538 GATGGGTGCCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGATCTCAC
195 GATGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2415602 ACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTATCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * **
2415667 GGGGACAC-TTTTTCTAAATGGTCAGAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTGCTTT
324 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
2415731 GTGCATGCCAACAAAAATTA-AAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCTTCCGAAA
388 GTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
2415795 AAATTTTAAAAAATCCCAAACCGTAAAGTGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
2415860 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
2415925 CATTGCCATGCAGAAATATGAAGATGTACTTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2415990 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTGCGTCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * * *
2416055 ATTTGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CTGAGGGTTTTGGCAGCAGGATCGCAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGTGGCAGCAGGATCGCAGC
* * *
2416119 ACGCAAAGGGGGACCC-AGCTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
776 ACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
2416183 CGGATGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGACTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
2416237 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGCATGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2416302 -ACAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * *
2416366 ACCTGATCGGCGGCATTGGGGTTCCGTCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
*
2416431 GAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-A
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2416495 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2416560 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2416625 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
2416690 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
2416755 CCATGAAACTTTACGTGAAGGCTTATGGGACCATTGTATAAATTTACAAGCCACAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* **
2416820 TGGCACATAGAAATATGAAGATGTGCCTAAACCCAAATACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
2416885 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACTGCTCGTTTTGTCGATTGGCTTAGGCATA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
2416950 TGGAGTTCATTCCCAGTCTAAGATCAGACCGGGATCAAGGGTTGTAGCTGCAGGATTGCTAGCAC
715 CGGAGTTCATTCCCAGTCTAAGATCGGACC-GGATCGAGGGTTGTGGCAGCAGGATCGC-AGCAC
* * * * * *
2417015 GTAGAGGGGGACCTGGCCGATCCCCGGCTGGCGCATCCCGCCCCTCTGGCCGGATGAACGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
2417080 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2417131 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGCGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2417196 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * *
2417261 ACCTGACCGATGACATTTGGGTTCCGGCGATCGGGGGGCCGGGTGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
2417326 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * * *
2417391 CCCCTTAATGATCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
2417456 GGAAATTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTTTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** *
2417521 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTGAAACTCCTTCTGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * ** *
2417586 TTCAAAAAATGCCAAACCTTAAAAAGATTCGGAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
456 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
2417651 CATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGATTTTACAAGGCATAAAAATCGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
2417716 GGCAC-TCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGC
586 GGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
2417780 ATCCTGCCTCTTTGGTCGACGTAGTGCCTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*
2417845 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATCGAGGGCTGTGGCAGCAGGATCGACAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCG-CAG
* ** * * * ** *
2417909 GACATAGAGGGGGACCCAATCGATCACCGGCTTGCGCATCCCGCCCCTCTGGTTGGCTGAGCACC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
2417974 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2418028 GGATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
2418093 ATC-GTGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * * *
2418157 AACCTGACCGGCGGCAATGGGGTTCCGGTGATTGGGGGGCCGGGGGG-GTCGACGCACTTGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGT-G-CGCACATGATGT
*
2418221 GCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2418286 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2418351 TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2418416 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAATTTGGGGCAAAAACTCCTCCCGAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
2418481 AA-TTTAAAAACTCCCAAATCGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
2418544 TGGCATGAAACTTCACGTGAAGGCTTATGGGACCGCTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
2418609 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
2418674 GTATCCCGTCTCTCTGGCCGACGTAATGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGACA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
2418739 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGCACCA
713 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATC-GCAGCA
* * * * * *
2418804 TGCAGAGGGGGACCCGACCGA-CCCTCGACTCGCGCATCCCGCCCCTCTTGTCGGCTGAGCACCC
777 CGCAGAGGGGGACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
2418868 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2418921 G-AT-C-G-G---A----C---C---G----GACC--A---AGGGTTGCAGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
2418960 TTCAGGCATGTACTGTTGCCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * *
2419025 ACCAGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGTGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGG-GGGTGTGCGCACATGATGTG
2419090 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
2419155 ACCCCCTTAAATAGCATTTGAGATTCTACAGATTTGCTGCTAGTAGCTATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2419220 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAACTTTTTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2419285 TGCATGCC-AAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
2419349 ATTTTAAAAAATCCCAAACC-TAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCATCTT
454 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2419413 GCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2419478 TTGGCATGTACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* **
2419543 CATCCAGTCTCTCTGGCCGATGTAGTTCCCGCCCGCCCGTCCGCCCGCCTGATCGTTTCGTCGGT
649 CATCCCGTCTCTCTGGCCGGCGTAG-T---GCCCG--C--CCGCCCG-C---TCGTTTCGTCGGT
** * *
2419608 TGGCTTAGGTGTACGGAGTTCATTCCCAATCTAAGA-CTGGACC-GAACTGAGGGTTGTGGCAGC
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGATC-GAGGGTTGTGGCAGC
* * *
2419671 AGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
765 AGGATC-GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
**
2419736 GGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
829 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2419800 GCATACGGAGTTCATTCACAGTCTAAGATCGGATCGGACGGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2419865 CTCGGGCATGTGCTGGTGCCTCA-TTTTCTTCGTCGGGGCACCATCGCCGGGGCATCGTCAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
* ** * *
2419929 ACCTAACCGGTGGCATTGGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
2419994 GATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCGATCCTCGAGAACTCACT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2420059 CCCTCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2420124 GTGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGA-CTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * *
2420188 GCATGCCAACAAAAATACAAGGATCATGTCTAAAAAGTTTGGGGCGAAAACTCCTTCCGAAAATA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
2420253 TTTT-AAAAATCCCAAACCGCAGAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2420317 CCAATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 CC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
2420382 TTGGCATGAAG-AATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCCACGACTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
2420446 CATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCCGCTAGCCCGTTCATTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT----CG----TTTCGTCGGTTGGC
* * * *
2420511 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTAGCAGCAAGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATC
* ** ** * * * *
2420576 GATAGCACATAGAGGGGGACTTGGCTGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTGA
771 G-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * ** * * *
2420641 GGGCCCGCACGCTCATTTTATGTGTTGACTTAGGCATACGGAGTTCATTCCTACTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2420700 GCATACGGAGTTCATCCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAGCTCTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2420765 CT-TGTGCATGTGCTGGTGCCGCATTTTTCTTCGGT-GGGGCACCATCGCCGGAGCATCATCGGA
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATCGCCGGAGCATCATCGGA
** **
2420828 GAACCTGACCGACGATATTGGGGTTTTGGCGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATC--GGGGGGCCGGGGGGTGTGCGCACATGATG
*
2420893 TGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
2420958 ACACCCCCTTAAATAGCGTTTGAGATTCTACAGATTTGCTGCCAGTAGCTATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2421023 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAACTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
2421088 TCTACATGCC-AAAAAAGTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAGTCCTTCTGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
2421152 AAATTTTAAAAAATCCCAAACC-TAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCATC
452 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2421216 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2421281 CATTGGCATGTACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2421346 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCCCGTTTTGTCGGTTGACTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*
2421411 ATACGGAGTTCATTCCCAATCTAAG
712 ATACGGAGTTCATTCCCAGTCTAAG
2421436 CATACGGAGT
Statistics
Matches: 6928, Mismatches: 831, Indels: 301
0.86 0.10 0.04
Matches are distributed among these distances:
867 156 0.02
868 401 0.06
869 5 0.00
870 3 0.00
872 7 0.00
874 1 0.00
876 8 0.00
877 1 0.00
879 25 0.00
880 158 0.02
881 4 0.00
882 2 0.00
883 1 0.00
886 2 0.00
887 2 0.00
888 221 0.03
889 131 0.02
890 112 0.02
891 10 0.00
892 503 0.07
893 368 0.05
894 613 0.09
895 673 0.10
896 175 0.03
897 300 0.04
898 272 0.04
899 778 0.11
900 110 0.02
901 128 0.02
902 411 0.06
903 381 0.05
904 143 0.02
905 38 0.01
906 2 0.00
907 1 0.00
909 1 0.00
910 2 0.00
912 3 0.00
915 1 0.00
917 108 0.02
918 6 0.00
919 2 0.00
920 2 0.00
921 2 0.00
922 186 0.03
923 3 0.00
925 124 0.02
926 342 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2418034 original size:26 final size:26
Alignment explanation
Indices: 2418004--2418054 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2417994 TGACTTAGGC
2418004 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
2418030 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2418055 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:2419813 original size:26 final size:25
Alignment explanation
Indices: 2419775--2419826 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
2419765 GTTGACTTAG
*
2419775 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCACAGTCTAA
2419800 GCATACGGAGTTCATTCACAGTCTAA
1 GCATAC-GAGTTCATTCACAGTCTAA
2419826 G
1 G
2419827 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCACAGTCTAA
Found at i:2420724 original size:26 final size:26
Alignment explanation
Indices: 2420674--2420725 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2420664 GTTGACTTAG
* *
2420674 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
*
2420700 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
2420726 AATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:2421445 original size:26 final size:26
Alignment explanation
Indices: 2421409--2421461 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2421399 GTTGACTTAG
2421409 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2421435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2421461 G
1 G
2421462 ATCGGGCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2422292 original size:26 final size:26
Alignment explanation
Indices: 2422256--2422306 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2422246 ATGACTTAGG
*
2422256 CATACGGAGTTCTTTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
2422282 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2422307 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:2424056 original size:26 final size:26
Alignment explanation
Indices: 2424020--2424072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2424010 GTTGACTTAG
*
2424020 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
2424046 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
2424072 G
1 G
2424073 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:2424963 original size:26 final size:26
Alignment explanation
Indices: 2424911--2424963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2424901 GTTGACTTAG
* *
2424911 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2424937 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2424963 G
1 G
2424964 GTCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2427501 original size:26 final size:26
Alignment explanation
Indices: 2427471--2427521 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2427461 TTGACCTAGG
2427471 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
2427497 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2427522 GATCGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:2430522 original size:877 final size:878
Alignment explanation
Indices: 2427497--2436241 Score: 10606
Period size: 902 Copynumber: 9.9 Consensus size: 878
2427487 CCAGTCTAAC
* * * *
2427497 CATACGGAGTTCATTCCCAGTCTAAG-AT-CGGATCGGACCGAGGGTTGCGACCGCACATGCTGG
1 CATACGAAGTTCATTCCCAGTCTAAGCATACGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * * *
2427560 GCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGTCGAGTCACCATCGCCGGAGCATCGTCAGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
2427625 AACCTGACCGACGGCATTGGGGTTCTGACGATCGGGAGGG-CGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
2427689 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2427754 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2427819 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2427884 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGG-CAAAACTCCTTAAGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAAAAA
* * * * * *
2427948 ATTTAAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATTATGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
2428013 GCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTTTGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2428078 TTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * **
2428143 CATCCCGTCTCTCTGGTCGACGTAAT----GCTTGCCCGCCCACCCGCTCGTTTCGTTAGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
2428204 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGTACTGGACCAAGGGTTGTGGTAGGATGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATC
** * *
2428269 GGCAAGCACGTGGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCCTCTCGCCGGCTG
780 GGC-AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
2428334 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
2428369 CATACGAAGTTAATTCCCCGTCTAAGCAGACGAAGTTAATTCCCAGTCTAAGATCAGAGCAGACT
1 CATACGAAGTTCATTCCCAGTCT-A--AG-C--A--T-A----C-G-----GATCAGA-C---C-
* * * * ** *
2428434 GAGGGTTGTGGCAGCACATACTGGGCTTGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGTGC
42 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * *
2428499 ACCATCGTC-G-G-A---T-----AACTTGACCGACGACATTAGGGTTCCGACGATCAGGGGGCC
107 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGC
*
2428553 CGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
171 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
2428618 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-ATGCATTTGAGATTTTATAGGTTTGCTGC
236 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGC
*
2428682 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** * * * *
2428747 TCGAGTTTTTAGCTGAATTTTTTCGTGCAAACCAAAAAAAATACAAAGATCATGTCTACCAATTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
2428812 TGGAGCCAAAACTCCTTAAGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
430 TGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
2428877 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTAT
495 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * *
2428942 GAATTTACAACCCATAAAAATGGCATTACCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
560 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
2429007 CCACCCTAACGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCGTAGT------------GC
625 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* *
2429060 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
690 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-
* * * * **
2429125 GGTC-GAGGGTTG-GGACAGCAGGATCAGCAGCATGCA-A-AAGG----G---GA-CCC-GGCTT
754 GGACTGAGGGTTGCGG-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTT
* * *
2429177 GCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGG
818 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
** * *
2429238 CATATTAAGTTCGTTCCCAATCTAAGCATATGGAGTTTATTCCCAGTCTAAGATCGGATCAGACC
1 CATACGAAGTTCATTCCC-A-GT---C-TA---AG--------CA---T---A-CGGATCAGACC
* * * * *
2429303 GAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGC
42 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
2429368 ACCATCATCGGAGCATCGTCGGAGAACCTGCCCGGCGTCATTAGGGTTCTGGCGAT--------C
107 ACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
2429425 AGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
171 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
2429490 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
236 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
2429555 AGTAGCAAGTAAAGTGTCTAAAATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
301 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
2429620 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
366 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
2429685 GGGGCCAAAAATCCATT-C-AAAAAATTTTAAAAAATCTCGAACCGTAAAAACTTTCAAAAATCA
431 GGGGCCAAAACTCC-TTACGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
2429748 TGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTCTAT
495 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
2429813 GAATTTACAAGCTATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACATA
560 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * * * *
2429878 CCACCCTATCGATCCACGGCTTGCGTATTACATCTCTCTAGCCGACGTAGTGCCCGCCCACCCAC
625 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * *
2429943 CTGCCCACTCGTTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
690 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * *
2430008 GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCTGGCCTAC
755 GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGC
* * * * *
2430073 GTATACCACCCCTCTGGCCAGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
820 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
2430132 CATACGAAGTTCATTCCCAGTCTAAG-AT-CGGATCAGACCGAGGGTGGCGGCAGCACATGCTGG
1 CATACGAAGTTCATTCCCAGTCTAAGCATACGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
2430195 GCTCAGGCATGTGCTGCTGCCGTATTTTTCCTCGTTGGGGCACCATCGTCGAACCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
2430260 AACCTGACTAGTGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 AACCTGAC-CGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
2430325 GCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCGTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2430390 CACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * * *
2430455 TGGAAATACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
2430520 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATT-CGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACG-AAA
* * *
2430584 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAGACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
2430649 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ***
2430714 CATTGGCATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCTGTGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
2430779 CGCTTCCCGTCTTTCTGACCGGCATAGT-TCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGCTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * *
2430843 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAAGACCAGACAGAGGGTTGCCGTAGCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGA
* * * * * * * *
2430908 TTGGCAGCACGCAAAGGGGGACCC-AGTCGATCCCCGGCTTGCGCAACCCG-CCTTCAGGCCGAC
778 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
2430971 TGAGCGCCCGCACGCTCATTTCGTGGGTTGAGTTAGG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
2431008 CATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGATCGAGGGTTGCGGTAGCTCATGCTGG
1 CATACGAAGTTCATTCCCAGTCTAAGCATACGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
2431071 GCTTGGGCATATGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATTATCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
2431136 AACCTGACTGGCAGAATTGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGTGTGCGCAGATGATG
131 AACCTGAC-CGCGGCATTGGGGTTCCGACGATCGGGGGGGC--CGGGGGGTGTGCGCACATGATG
* * **
2431201 TGCGATGGGTGCTCGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2431266 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2431331 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2431396 TGTGCGTGCCAA-AAACAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
388 TGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAA
* * * *
2431460 AAAATTTT-AAAAATCCAGAACCGCAAAAAGTTTTGAAAAA-CGTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
2431523 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
2431588 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCT
581 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * ** *
2431653 TGTGCTTCCTGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCCCGCCTTCTTGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
2431718 TGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATAGGATCAGACTGAGGGTTACGGTAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAG
* ** * *
2431783 GATTGGCAGCACGTGGAGAGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
776 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* **
2431847 GTTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGG
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
2431886 CATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACTGGAC
1 CATACGA-AGTTCATTCCCAGTCTAAGCATAC-G-G---------A-TC----A---GAC----C
* * *
2431950 TGAGGGTTGCGGCAGCTCATGCTGGGCTCGGACATATGCTGGTGCCGCATTTTTCTTCGTCGGGG
42 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * * * * * *
2432015 CACCATCG-CTGTATCATCACCGGAGAACCTGACCGACAGAATTAGGGTTCCGGCAATC-GGAGG
106 CACCATCGTC-GGAGCATCGTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGG
*
2432078 GCCGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
2432143 CCCCTCATGAAACCTC-ACGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
234 TCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
2432207 GCCAGTAGCCATTAAAGTGTCTGGAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
2432272 CTTCGAGTTTTTAGGTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
2432337 TTTGGGGCCAAAACTCCGTCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
428 TTTGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
2432402 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
2432467 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGCACATGTGCATAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
2432532 TACTACCCTATCGATCCACGCCTTACGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCACCC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* ** * *
2432597 GCCCACCCGCTCGTTTTC-TTTGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGA
688 GCCCGCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
2432661 CTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACTCGGCCGAT-CCTCGGC
752 CCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGC
* *
2432725 TTGCGCATCCCGCCCCTGC-AGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTT-ACTTAGG
816 TTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
2432787 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACC
1 CATACGAAGTTCATTCCCAGTCTAAGCATAC-G-G---A-T------C----A---GACC-G---
* * * *
2432852 AAGGGTTACGGCAGCACATGATGGGCTCAGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGC
43 -AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
2432917 ACCATCGTCGGAGCAACGCCGGAGAACCTGACCG-GAGCCATTGGGGTTCCGACGATCAGAGGGG
107 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGCG-G-CATTGGGGTTCCGACGATCGGGGGGG
* * * * * *
2432981 TCGGGGGGTGTGCGCTCATGTTGTGCGATGGGTGCTGATACTTGGCCATTATATTGGCCCCCTAC
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
2433046 CCCTCATCAAACCTCGCA-AACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 CCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
** * * *
2433110 CCAACAGCTATTAAAGTGTCTAAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
2433175 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
2433240 TTGGGTCCAAAACTCCGTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATC
429 TTGGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
2433305 GTGAAAAATAGAAAACGAGTCGTCTTGCAATAAAACTTCACCTGAAGGCTTAAGGGACCATTGTA
494 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
2433370 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAACCCACCC
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
2433435 ACCACCCTATCGATGCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGCCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * *
2433500 CCCGCCCGCTTGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACT
689 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
2433565 GGACAGAGGGTTGCGGCAGCAGGATCTGTAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTG
754 GGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTG
* * *
2433630 CGCATCCCGCCCCTTTGGCCGGCTGCGCGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGG
819 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
2433690 CATACGAAGCTCATTCCCAGTGTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACC
1 CATACGAAGTTCATTCCCA--GT---C-T---AAG--CA----TA--C--GGATCAGACCG-A--
* * * * * **
2433755 GAAGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGATGTCGCATTTTTCTTCACCGGGGC
44 G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
2433820 ACCATCGTCGAAGCATCATCGGAGAAACTGACCGACGACATTGGGGTTCCGGTGAT--AGGGGGC
107 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
2433883 CGGGTGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
171 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
2433948 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGC
236 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2434013 AGTAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
301 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
2434078 CGAGTTTTTACCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTT
366 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
2434143 GGGGCAAAAACTCCTTCCGAAAAAATTTT-AAAAATCTCGAACCGTAAAATGTTTCAAAAATCAT
431 GGGGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
2434207 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
496 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
2434272 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
561 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
2434337 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCGCGCCCGCG
626 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * * * *
2434402 CGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCTG
691 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * ** * *
2434467 ATTGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACTCGACCGAT-CCTCAACCTGT
756 ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGC
* * ** *
2434531 GCATCCCGCCCCTCTGGCCGACTGAGCTCCCAAACGCTGGTTTCGTGGGTTGACTTAGG
820 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * * *
2434590 CATACGGAGTTCATTCCCAGTCTAAG-AT-CAGACCGGACCGAGGGTTGCAGCGGCACATGATGG
1 CATACGAAGTTCATTCCCAGTCTAAGCATACGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
2434653 GCTCAGGCATGTGCTGGTGCCGGATTTTTCTTCATC-GGGCACCATCACCGGAGCATCGTCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
2434717 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGAGTTGTGTGCACATGAT
131 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-G-TGTGCGCACATGAT
* * * *
2434782 GTGCGATGGGTGCCGATACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
2434847 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2434912 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
2434977 TTGTGCATGGCAA-AAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAA
* * **
2435041 AAAATTTTAAAAAATCCCGAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
2435106 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
2435171 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2435236 GCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCG--CGCCCGCGCGCCCGCTAGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
2435299 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGA-GGTTGCTGTAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGG
* * ** ** * **
2435363 ATCGACAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCATCCCTCTAGCCGAT
777 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* **
2435428 TGAGTGCCCGCACAATCGTTTCGTGGGTTGACTTAGG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
2435465 CAGAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCGGATAGGAC
1 CATACGA-AGTTCATTCCCAGTCTAAGCATAC---G----------G----A--TC----A-GAC
* * * * * **
2435529 CAAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTACTGGTGCTGCATTTTTCTTCACCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
2435594 CACCATCGTCGGAG-AAC--C---TAACC-GA---CGGCATTGGGGTTCCGACGATCGGTGGGGC
106 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
2435649 C-GGGGGT-TGCGCACATGATGTGAGATGGGTGCTGATACATGGCCCTTATATTGG-CCCCTATC
171 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
2435711 CCTCATCAAACC-CGGAAAAATCTCACCCCCTTAAAGAGTATTTGAGAATTTACAGGTTTGCTGC
236 CCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
2435775 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * **
2435840 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAAAAGTACAAGGATCACGTCTAAAAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
2435905 TGGGGCCAAAACTCCTT-CTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
430 TGGGGCCAAAACTCCTTAC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
2435969 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTA
494 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
2436034 CGAATTTACAAGCCATAAAAATGGCCTTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
2436099 ACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * **
2436164 CCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGAGT
689 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
2436229 GGACTGAGGGTTG
754 GGACTGAGGGTTG
2436242 TAGCGGCACA
Statistics
Matches: 6857, Mismatches: 783, Indels: 449
0.85 0.10 0.06
Matches are distributed among these distances:
868 108 0.02
869 138 0.02
870 4 0.00
871 208 0.03
872 274 0.04
873 56 0.01
874 57 0.01
875 126 0.02
876 465 0.07
877 841 0.12
878 691 0.10
879 14 0.00
880 35 0.01
881 80 0.01
882 8 0.00
883 87 0.01
884 4 0.00
885 165 0.02
886 299 0.04
887 36 0.01
888 323 0.05
889 230 0.03
890 1 0.00
891 34 0.00
892 5 0.00
893 10 0.00
894 74 0.01
895 7 0.00
896 6 0.00
897 4 0.00
898 61 0.01
899 7 0.00
900 387 0.06
901 753 0.11
902 992 0.14
903 142 0.02
904 107 0.02
905 3 0.00
906 1 0.00
908 1 0.00
909 1 0.00
910 1 0.00
912 3 0.00
914 2 0.00
916 1 0.00
917 1 0.00
918 2 0.00
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
CATACGAAGTTCATTCCCAGTCTAAGCATACGGATCAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
AACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:2431921 original size:26 final size:26
Alignment explanation
Indices: 2431885--2431937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2431875 GTTGACTTAG
*
2431885 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
2431911 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
2431937 G
1 G
2431938 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:2432822 original size:26 final size:26
Alignment explanation
Indices: 2432786--2432838 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2432776 GGTTACTTAG
*
2432786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2432812 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2432838 G
1 G
2432839 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:2433729 original size:26 final size:26
Alignment explanation
Indices: 2433689--2433741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2433679 GTTGACTTAG
*
2433689 GCATACGAAGCTCATTCCCAGTGTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
* *
2433715 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
2433741 G
1 G
2433742 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:2437106 original size:26 final size:26
Alignment explanation
Indices: 2437070--2437120 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2437060 GTTGACTTAG
2437070 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
2437096 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
2437121 AGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:2438037 original size:26 final size:26
Alignment explanation
Indices: 2438000--2438057 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
2437990 CGTGGGTTGA
*
2438000 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
2438027 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
2438053 CTAAG
1 CTAAG
2438058 ATCGGACCGC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:2439797 original size:26 final size:26
Alignment explanation
Indices: 2439761--2439813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2439751 GTTGATTTTG
*
2439761 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2439787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2439813 G
1 G
2439814 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2441532 original size:26 final size:26
Alignment explanation
Indices: 2441496--2441574 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
2441486 GTTGACTTAG
2441496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2441522 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2441548 GCATACGGAGCTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2441574 G
1 G
2441575 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2443332 original size:25 final size:26
Alignment explanation
Indices: 2443281--2443332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2443271 GTTGACTTAG
2443281 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
*
2443307 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
2443332 G
1 G
2443333 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:2444754 original size:902 final size:896
Alignment explanation
Indices: 2442407--2444954 Score: 3626
Period size: 902 Copynumber: 2.8 Consensus size: 896
2442397 GTTGACTTAG
* *
2442407 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATATGGAGTTCATTCCAGTCTAAGATCGGACCTGACAGAGGGTTGCGGCAGCACATGCTGGGC
* * *
2442472 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGCTGGAGAA
66 TC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC-GGAGAA
* ** * * * * *
2442537 CCTGACCGACGACGTTGGGGTTCTAGCGATTGGGGGGGCGAGGGGGGTGTGCGCACATGATGTGC
129 CCTGACCGACGGCAATAGGGTTCCAACGA-TCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
* * *
2442602 GATGGGTTCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
2442667 CCCCC-TAAAGAGCTTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2442731 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACAAGTTTTTAGCTGAATTTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTT
* * *
2442796 TTGCATGCCAACAAAAATACAAGGATTATGACTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * **
2442861 AATTTTAAAAAATC-CTGAACCGCAAAATGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AATTTAAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
2442925 TTTCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ***
2442990 CCTTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
2443055 CGCATCCCGTCTCTCTGGTCGGCCTAGTGCCT---GCCCGCCCGCCCATTTATTTCGCCAGTTGG
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTCCCGCCC-CCCGCCC-TTCGTTTCGTCAGTTGG
* * * * * *
2443117 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGGCCGACGGTTGTGGCAATAGGAT
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACGGTTGCGACAACAGGAT
* * * *
2443182 CGACAACGCGCAGAGGGTGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGGCTG
772 CGACAACACGAAGAGGGTGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGACTG
* * * * *
2443247 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
837 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
*
2443307 GCATATGGAGTTCATTCCAGTCTAAGATCGGACCTGACTGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATATGGAGTTCATTCCAGTCTAAGATCGGACCTGACAGAGGGTTGCGGCAGCACATGCTGGGC
* ** *
2443372 TCGAGCATTTGCTGGTGCCGCATTTTTCTTCGTC-GAACACCATCGCCGGAGCATCACCGGAGAA
66 TCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GCGGAGAA
* * *
2443436 CCTGACCGACGG-TATTGAGGTTCCAACGATCGGGGGGCCAGGCGGGTGTGCGCACATGATGTGC
129 CCTGACCGACGGCAATAG-GGTTCCAACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
*
2443500 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
2443565 CCCACTTAAAGGGCATTTAATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2443630 GGGACAC-TTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
2443694 GCATGCCAACAAAAATACAAGGATCATGACTACCAAGTCTGGGGCCAAAAATCCTTCCAAAAAAA
388 GCATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
* *
2443759 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
453 TTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
2443824 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
2443889 TGGCATGCAGAAATATCAAGATGTGCCCAAACACACCTACCACCCTTTCGACCCACGGCTTGCCC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCTTGCGC
* *
2443954 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCACCCGCCCGTTCGTTTCGTCTGTTGGCT
647 ATCCCGTCTCTCTGGCCGGCGTAGTG-CCTCCCGCCC-CCCGCCC-TTCGTTTCGTCAGTTGGCT
* * * * *
2444019 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATTG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACGGTTGCGACAACAGGATCG
* * * * *
2444084 ACAGCACGAAGAGGG-GACCCAGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAG
774 ACAACACGAAGAGGGTGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGACTGAG
* *
2444148 CGTCCGCACGTTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
839 CGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * *
2444206 GCATATGGAGCTCATTCCCAGTCTAAGATCGGA-CTGGACAGAGGGTTACGACAGCACATGCTGG
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGGACCT-GACAGAGGGTTGCGGCAGCACATGCTGG
**
2444270 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTCGGAG
64 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CGGAG
* * * * *
2444335 AACCTGACCGGCGGCAATAGGGTTCCGACGATCGGGGGGTCTGGGGGGTGTGCGCAAATGATGTG
127 AACCTGACCGACGGCAATAGGGTTCCAACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * *
2444400 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAA-TTTCAAGAACTCA
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCA
* * * *
2444464 CACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTACAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2444529 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** * **
2444594 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAAGTCCTTCTGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
2444659 AATTTCAAAAAGTCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
451 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2444724 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2444789 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCAGCCTATCGATCCATGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGC
* *
2444854 GCATCCCGTCTCTCTGGCCGGCGTAGTG---CCCG---CCTG--C-TCGTTTCGTCGGTTGGCTT
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTCCCGCCCCCCGCCCTTCGTTTCGTCAGTTGGCTT
*
2444910 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAC
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAC
2444955 ATGATGTGAC
Statistics
Matches: 1478, Mismatches: 150, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
890 58 0.04
892 1 0.00
894 3 0.00
895 1 0.00
896 265 0.18
897 4 0.00
898 148 0.10
899 217 0.15
900 261 0.18
901 200 0.14
902 320 0.22
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCGGACCTGACAGAGGGTTGCGGCAGCACATGCTGGGC
TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCGGAGAACC
TGACCGACGGCAATAGGGTTCCAACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
AAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCTCCCGCCCCCCGCCCTTCGTTTCGTCAGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACGGTTGCGACAACAGGATCGACAACAC
GAAGAGGGTGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGACTGAGCGCCCGC
ACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
Found at i:2446400 original size:26 final size:26
Alignment explanation
Indices: 2446361--2446413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2446351 GTTGACTTAG
2446361 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
* *
2446387 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
2446413 G
1 G
2446414 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:2447452 original size:183 final size:184
Alignment explanation
Indices: 2447104--2447455 Score: 472
Period size: 183 Copynumber: 1.9 Consensus size: 184
2447094 ATTGGGTTAG
* * * *
2447104 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCTGGTAGCACATGCTGG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTGCTGGCAGCACATGCTAG
* * * * *
2447169 GCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGGGGCACCGTCGTCGGAGCATCGTCGGAG
66 GCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGCCAGAG
** * * *
2447234 AATTTGATCGACAGCGTTGGGCTTCCGGCGATCGGGGGTTTATTCCCAGTCTAA
131 AACCTGACCGACAGCATTGGGCTTCCGACGATCGGGGGTTTATTCCCAGTCTAA
** * *
2447288 GCATACGGACTTCATTCCTGGTCCAAGATCGGACCGGATCGAGGGTTGC-GGCAGCACATGCTAG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTGCTGGCAGCACATGCTAG
* * **
2447352 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCAGAG
66 GCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGCCAGAG
* * *
2447417 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGT
131 AACCTGACCGACAGCATTGGGCTTCCGACGATCGGGGGT
2447456 CCCGGGGGGG
Statistics
Matches: 143, Mismatches: 25, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
183 100 0.70
184 43 0.30
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.23
Consensus pattern (184 bp):
GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGACCGAGGGTTGCTGGCAGCACATGCTAG
GCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGCCAGAG
AACCTGACCGACAGCATTGGGCTTCCGACGATCGGGGGTTTATTCCCAGTCTAA
Found at i:2448706 original size:901 final size:901
Alignment explanation
Indices: 2445483--2449074 Score: 5114
Period size: 901 Copynumber: 4.0 Consensus size: 901
2445473 GTTGGCTTAG
* * ** * * ** *
2445483 GCATACGGAGTTCATTACCAGTATAAGATCAGACTAGATCGAGGGTTGCGGTGGCACATGCTGGG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
* * ** *
2445548 CTCGGGCATGTGCTGGTGCTGCAATTTTCTTCACCGGGGCACCATCG-CAGGAGCATCACCGGAG
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCA-GAGCATCACCGGAG
* * * * * * *
2445612 AACCTAACTGGCGGCATTGGCGTTCCGACGATCGGAGGG-GCTGGGGGGTGTGCGTGA-ATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGTCCCGGGGGGTGTGCG-CACATGATG
*
2445675 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2445740 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2445805 ATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACATTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *** * *
2445870 TGTGCCTGGCAAAAAAAATACAAGGATCACGTCTACCAAGTTCACGGCCAAAACTCATTCCGAAA
388 TGTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
2445935 AAATTTTAAAAAATCTCTAAGCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2446000 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2446065 CATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
2446130 CGAATCCCGTATCTTTGGCCGACGTAGTGCGCTTCTGCCCGCCCGCCCACCGGCTTGTTTCGTCA
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGC-C--C-GCTCGCCCGCCCACCCGCTCGTTTCGTCA
* ** * * * *
2446195 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACC--A-AGAGGCTTGTGGCAGT
709 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* * * * * * ** *** **
2446257 AGGAT--T-GGCATCACGTA-GAGG-GGGTCCCGGTCGATCCCTGGCTT-G-CGTATC-CCGCCA
774 A-CATGCTGGGC-TCAGGCATG-GGCTGGTGCC-G-C-AT--TTTTCTTCGCCGGGGCACCTTC-
* * * * ** * * * ** * **
2446314 CTCTG-GC--CGGCTGAGCGCCTGCACG-CTCGT-TTCGTGGGTTGACTTAGGCATAC-GGAATT
830 GTCGGAGCATCGTCGGAGAACCTGAACGAC-GGTGTT-G-GGCTT--CCGACG-AT-CGGGGGTT
*
2446373 CATTCCCAATCTAA
888 CATTCCCAGTCTAA
* * * * *
2446387 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
* * * * * *
2446452 CTCGGGCATGTGCTGGTGCTGCATTTTTCCTT-GTTGGGGCACCATCGTCGGAGCATCACCGGGG
66 CTCAGGCATGTGCTGGTGCTGCATTTTT-CTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAG
** *
2446516 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCCGGGGGGTGTGCGCACATGATGTG
*
2446581 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2446646 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2446711 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2446776 TGCATGCCAACAAAAGTACAAGGATTACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
390 TGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
2446841 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2446906 GCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
2446971 TTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATC-ATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * *
2447035 CATCCCGTCTCTCTAGCTGACGTAGTGCCCATTCGCCCGTCCACCCGCTCGTTTCATC-GATTGG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACCCGCTCGTTTCGTCAG-TTGG
* * *
2447099 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCTGGTAGCACAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACAT
* *
2447164 GCTGGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCACCGGGGCACCGTCGTCGGAGCATCGT
778 GCTGGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCTTCGTCGGAGCATCGT
** * * * * *
2447229 CGGAGAATTTGATCGACAGCGTTGGGCTTCCGGCGATCGGGGGTTTATTCCCAGTCTAA
843 CGGAGAACCTGAACGACGGTGTTGGGCTTCCGACGATCGGGGGTTCATTCCCAGTCTAA
** *
2447288 GCATACGGACTTCATTCCTGGTCCAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
* * *
2447353 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAGA
*
2447418 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGTCCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCC-GGGGGGTGTGCGCACATGATGTG
*
2447483 C-ATTGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
2447547 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2447612 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
2447677 GTGCATGCCAAAAAAAGTACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
389 GTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
*
2447742 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAATGCGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA-ACGAGTCGTC
*
2447806 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2447871 CATTGGCATGAAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2447936 CGCATCCCGTCTCTCTGGGCGACGTAGTGCCCGCTCGCCCACCCACCCGCTCGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACCCGCTCGTTTCGTCAGTTG
*
2448001 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACAT
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * *
2448066 GCTTGGGCTCAGGCATGGGCTGGTGCCACATTTTTATTCGTCGGGGCACCTTCGTCGGAGCATCG
778 GC-TGGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCTTCGTCGGAGCATCG
* *
2448131 TCGGAGAACTTGAACGACGGTGTTGGGCTTTCGACGATCGGGGGTTCATTCCCAGTCTAA
842 TCGGAGAACCTGAACGACGGTGTTGGGCTTCCGACGATCGGGGGTTCATTCCCAGTCTAA
*
2448191 GCATACGGACTTAATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
* *
2448256 CTCATGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAGA
* *
2448321 ACC-GACCGACGGCATTGGGGTTCCGACTATCGGGGGTCCCGGGGGGTGTGCGTACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCCGGGGGGTGTGCGCACATGATGTGC
*
2448385 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2448450 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2448515 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
2448580 GCATGCCAATAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * **
2448645 TTTCAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2448710 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
2448775 TGGCATTCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
586 TGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
2448840 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCT
* ** *
2448905 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCCCATGCT
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
2448970 GGGCTCGGGCAAGGGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCTTCG-CTGGAGCGTCGTCG
781 GGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCTTCGTC-GGAGCATCGTCG
* *
2449034 GAGAACCTGACCGACGATGTTGGGCTTCCGACGATCGGGGG
845 GAGAACCTGAACGACGGTGTTGGGCTTCCGACGATCGGGGG
2449075 GCCGGGGGGG
Statistics
Matches: 2436, Mismatches: 219, Indels: 70
0.89 0.08 0.03
Matches are distributed among these distances:
899 63 0.03
900 102 0.04
901 748 0.31
902 505 0.21
903 409 0.17
904 581 0.24
905 25 0.01
906 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GCATACGGACTTCATTCCCAGTCCAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGG
CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCAGGCATGGGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCTTCGTCGGAGCATCGTCGG
AGAACCTGAACGACGGTGTTGGGCTTCCGACGATCGGGGGTTCATTCCCAGTCTAA
Found at i:2449791 original size:26 final size:26
Alignment explanation
Indices: 2449762--2449814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2449752 GTTGACTTAG
*
2449762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2449788 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2449814 G
1 G
2449815 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2451207 original size:909 final size:905
Alignment explanation
Indices: 2448908--2461582 Score: 11226
Period size: 902 Copynumber: 14.0 Consensus size: 905
2448898 GTTGGCTTAG
* ** *
2448908 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
2448973 CTCGGGCAAGGGCTGGTGCTGCATTTTTCTTCGCCGGGGCAC--CTTC-G-C-T-G-GAGCGTCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACATCGTCGGACATCGCGA-CATTG
* * *** * *
2449031 TCGGAGAACCTGACCGACGATGTTGGGCTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACA
130 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* * * *
2449095 TGATGTGCGATAGGTACTGGTACTTGGCCCTTATCTTGGCCCCCTATCCCTCATCAAACCTCAAG
195 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
** * *
2449160 AACTCACACCCCCTTAAACTGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
2449225 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C------TT--CTGAAA
325 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
2449279 TTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTC
390 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
2449344 CAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAGTCATGAAAAATAGAGAACGA
455 CAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGA
*
2449408 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAA
519 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
2449473 AAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
584 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
2449538 GGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG----CCCGCCCG-C-C-CGTTTCGTCGGTT
649 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCGCTCGTTTCGTCGGTT
* * * *
2449596 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCAAGGGTTGTGGCAGCAA
714 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAG
* ** **
2449660 GATCGGCAGCACACAGAGGGGGACCC-AGCCGATCCCCGGCTTATGCATCCCGCCCCTCTAACCG
778 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
2449724 GCTGAGCGCCTGCATGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2449788 GCATACAGAGTTCATTCTCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
2449853 CTCG-GTCATGTGCTGGTGTCGCATTTTTCTTCG-TCGGGGCACCATCGTCGG--A--GC-ATCA
66 CTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCA-CATCGTCGGACATCGCGA-CA
* * * * *
2449911 ---CCGGAGAACCTAACCGACAGCATTGGGGTTCTGGCGATCGGGGGGGCCG-GGGTGGTGTGCG
127 TTGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGG-GGTGTGCG
2449972 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
191 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
2450037 TGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
256 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
2450101 GTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
321 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
2450166 GAATTATTTTT-TGCATGCCAAGAAAAATACAAGGATCACGTCTAACAAGTTTGGTGCCAAAACT
386 GAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * ** ** *
2450230 CCTTCCGAAAAAATTTTAAAAAATCCCGAGCTATAAAAAGTTTAAAAAATTGTGAAAAATAAAAA
450 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAA
* * *
2450295 ACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGATTTTCCAAGCC
515 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
2450360 ATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGAT
580 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
2450425 CCACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGTACCCACCTGCCCGCCGCACGTTTCGTC
645 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCGCTCGTTTCGTC
* * * * * * *
2450490 GGTTGTCTTAGGCAGACGGAGTTCATTCCTAGTCTAAGATCGGACC-GAACCGAGGTTTGTGGTA
710 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCA
* * *
2450554 GCAGGATCGGCAGCACGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGTGCATCCCGCCCTTCTT
774 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
2450618 GCCGGCTGAGCGCCCGCACGCTCGTATCATGAGTTGACTTAGGCATACGAAATTCATTCCCAGTC
838 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
2450683 TGA
903 TAA
* * *
2450686 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
2450751 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACTATCGTCGGACTATCGCCGGAAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCAC-ATCGTCGGAC-ATCG-C-G-AC
* * ** * * *
2450816 ATTGCCGAAGAACTTGACCAACGGCATTGGGGTTCCTACGATTGGGGGGGCCGAGGAGGTGTGCG
126 ATTGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCG
* * * * *
2450881 CAAATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCACTCATCAAACCT
191 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
2450946 CAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
256 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
2451011 GTGTCTGAAAT-GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCT
321 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
2451075 GAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
386 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
2451140 CTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAACAGAAAA
451 CTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
*
2451205 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCA
516 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
2451270 TAAAAATGGCACTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTACCGATC
581 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
2451335 CACAGCTTGCACATCCTGTCTCTCTGGCTGGCGTAGAGCCCGCCCGCCCGCCCACTCGCTCGTTT
646 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG----C-CGCTCGTTT
* * ** * *
2451400 CATCGGTTGGCTTAGGAATGTGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGGTGCA
706 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * ** *
2451465 GCAGCAGGATCGGTAGCACACAGAGGGGGACTCGACCGATCGTCGGCTTGCGCATCCCGTCCCTC
771 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * **
2451530 TAGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAG
836 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
2451595 TCTAA
901 TCTAA
* *
2451600 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2451665 CTAG-GCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCAT--CG----
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCA-CATCGTCGGA-CATCGCGACAT
* * * * *
2451722 T--CGAAGAACCTGACCGACGGTATTGGGGTTCCGACTATCGGGCGGGCCGAGGGGGTGTGCGCA
128 TGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCA
* * *
2451785 CATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
2451850 AGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
2451915 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACATC-ATGTTTTTAGCTG
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTG
* * ** *
2451979 AAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTTGTCTACCAAGTTTCGGGCCAAAACTCC
387 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** * *
2452044 -TCTGAAAAAATTTT-AAAAATCCCCAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
452 TTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
*
2452107 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCAT
517 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
2452172 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
582 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
2452237 ACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCACCCTCCCACTCATATC
647 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG----CCC-GCCGCTCGTTTC
* * * ** * ** *
2452302 G-CTGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGATCAGATTGAGGGTTACGG
707 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * ** * * *
2452366 ACAGCAGGATCGGTAGCACACAGAGGGGGACCCGATCAATCGTCGACTTGCTCATCCCGCCCTTC
772 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
** * * *
2452431 TGGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
836 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
2452496 TCTAA
901 TCTAA
* * * * * * *
2452501 GGATACGAAG----TT--CAGTCTGAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGAT-C-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA-CATGCTGG
* * * * * * ** * * *** *
2452558 TAGCACGCAGAAGGGGACCTGACCAAT-CCCCAGCTTGCTCATCCCGCCCCTTTGCCCGGTTGAG
65 --GCTCG-AGCATGTG--CTG----GTGCCGCA--TTTTTC-T-TCG---C--TG--GGGCACAT
* * * * * * *** ** * *** * *
2452622 CGCCCG-CA-CGC-TCATTTCATGG-G---TTGA-CTTAGGCATACAGAGTTCATTCCCAGTCTA
110 CGTCGGACATCGCGACATTGC-CGGAGAACCTGACCGGCGGCAT-TGGGGTTC-CGACGA-TC-G
* **** * **** * * * * ** * * *
2452679 AGCATACAGAGTTCATTCTGAGTCTAAGATCGGACCAGACCGATGGTTGCGATAGCACATGCTGG
170 GGGGGGCCGAG-GGGGTGTGCG-C--ACAT--GA--TGTGCGATGGGTGC--TGGTAC-T--T-G
* * * ** ** * ** * ****** * * * * * **
2452744 GCGGGGCATGTGCTGGTGCCGTAGT-TTTCTTCGTTGGGCAACATCATCGGAGCATCGCCAGAGA
221 GC---CCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAAC-TC--A-CACCCCCTTA-A
*** * * * *** * * * *****
2452808 ACCTGA-CCGGTG-GCATTGGGGTTCCGGTGATCGGGC-G-GGCC-GGGGGGTGTGCGCACATGA
277 A---GAGCATTTGAG-ATT---TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-----C-TGA
* * ** ** * **
2452868 TGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
329 -----AAT--G-G--GG-AC--A---CTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---
* * * ** ** *
2452933 TCACACCCCTTTAAAGAGTATTTA--AG-ATTTTATAGGTT-TGC-TGCCAGTAGCCATTA-AA-
366 T-ACA---C-TT--CGAGTTTTTAGCTGAATTTT-T---TTGTGCATGCCAACA-AAAATACAAG
* ** * * ** * * *
2452991 G-T---GTCTGA--AA---TGGGG---ACACTTTTTTCAAATGGCCACAAAATCTTGTACACT-T
419 GATCACGTCT-ACCAAGTTTGGGGCCAAAAC-TCCTTCCAA-----A-AAAATTTTAAAAAATCC
**** ** ** * ** * ** **
2453043 CGAGTTTTTAGCTGAAGTTTTTTGTGCATTCCAACAAAAAAAAGGATCACGTCTACCAAGT-TTG
476 CGA-ACCATA--AAAAG--TTTTG-AAAAT-C-ATGAAAAATA-GAAAACGAGT--C--GTCTT-
** ** *** *** * ** * **
2453107 GGGCCA--AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTTCGAAAATC
527 --GCCATGAAACT--TCACG-TGAAGGCTTAAGGGA--CC--ATTGTATGAA-TTTAC--AAGCC
** * * * * **
2453170 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
580 AT-AAAAAT-GGCATTG-G-C-AC--G-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAA
*** ** * * *** * * *** **** * ** *
2453235 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAACAAGAAGATGTGC-CTAAACCCATC
624 CCCACCTACCA-CCCTATCGAT-CCA-CGGCTTGC-G---CATCCCG-TCT-CTCT-GGCCGA-C
*** * ** * * ** * * *
2453299 -TACCACCCTA-TCGATCCACGGCTTGCGCATCCCATCCCTCTGGCCGGCGTAGTGCCTGCCCGC
678 GTAGTGCCC-ACCCG--CC-C-GC---CGC-T-CGTTTCGTC-GGTTGGCTTAG-GCAT--ACG-
** * * * * * * *** * * * *
2453362 CCG-CCCTCTCGCTC-GTTTCGT-CGATTGGCTTAG-GCATA-CAAAATTCATTC-CCTATCTAA
728 GAGTTCAT-TC-C-CAG--TC-TAAGA-T--C--AGACCAGACCGAGGGT--TGCGGC-AGC-AG
* * * * * * * **** ***
2453421 GATCAGACCAG-ACTG-A-AGGTTGCAGCAG-CAGGAT---CGG-TAGCATGCAGAGAGGGAC-C
778 GATC-G-GCAGCAC-GCAGAGG-GGGACCCGAC-CGATCCCCGGCTTGC--GCATCCCGCCCCTC
*** * * ** *
2453477 TGGCCGATCCTCG-GCTTGCGCATCCTGCCCCTTTGACCGACTGAGCGCCCGTACGCTCGTTTCG
836 TGGCCGA--CT-GAGCGCCCGCA--C-GCTCGTTT---CG--TG-G-G-TTG-ACT---------
* * *
2453541 TGGGTTGACTTACGCATACGGAGTTCTTTCCTAGTCTAA
877 ----------TAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
2453580 GCATACAAAGTTCATTCCCAATTTAAGGTTGGACCGTACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2453645 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTC-ATCGGGG-A-ACCGTC--AC--CG-GAGCATC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACATCGTCGGACATCGCGA-CATT
* * * * * * * *
2453702 ACCGAAGAACCTAACCGGCAGCATTTGGGTTTCGACGATC-AGGGGGCCG-GGGGGTGTGCACAC
129 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCAC
* * * * * * *
2453765 AAGATGTGCGATGGGTGCTGATAGTTGGCCCTTATGTTGGTCCCCTGTCCCTCATCAAACCTTGA
194 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
2453830 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTG
259 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2453895 TCTGAAATGGGGACACTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGGGTTTTTAGCTGAA
324 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * *
2453960 TTTTTTTGTGCATGCCAGCAAAAATAAAAGGATCATGTCTACCATGTTTGGAGACAAAACTCCTT
389 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * ** *
2454025 TCGAAAAAA-TTTAAAAAATTCCGAACCACAAAAAATTTCAAAAATCATGAAAAATAAAAAACGA
454 CCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
*
2454089 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAA
519 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
2454154 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAATTCACCTACCACCTTATCGATCCAC
584 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
2454219 GGCTTACGCTTCCCGTCTCTCTGGCCAACGTAGTGCCTACCCACCCACCTGCTCGTTTCGTCAGT
649 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC-GCTCGTTTCGTCGGT
* * * * **
2454284 TCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAG
713 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
** * * * * * *
2454349 GATCGGCAGCACATAGAGGGGGACCCGAACGATCCCTGACTTGCGCATCTCACCCCTCTGGTCGA
778 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * *
2454414 CTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
2454477 G-AT-C--AG--------C---C------CGGACC--A---AGGGTT-CTGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGG
* * * * * * *
2454515 GCTTGGGCATTTGCTGGTGCCGCATTTTTCTTCGCTGGCGCAC--CATC--AC--C-AGAGCATC
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACATCGTCGGACATCGCGA-CATT
* * *
2454573 GCCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGGGGTGTGCGCA
129 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGAGGGGGTGTGCGCA
* * * *
2454637 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTAACCAAACCTTG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
2454702 AGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAAT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
2454767 GTATAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
2454832 ATGTTTTTGTGTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
388 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** ** * *
2454897 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACG
453 TCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
*
2454962 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
2455027 AAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCC
583 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
2455092 CGGCTTACGCTTCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCTCCTGCTCGTTTCATCGG
648 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC-GCTCGTTTCGTCGG
* **
2455153 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCA
712 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* ** ** * * * *
2455218 GGATCGGCAGCACGCAGAGAGGGATTCGGTCGATCCCTGACTTGTGCATCCCGACCCTCTGGCCG
777 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
2455283 GCTGAGCACCCGCATGCTCATTTC-------G--TT-GG--T-C-GA---C-TT---A--C---
842 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2455321 GCATACGGAGTTCATTCCTAGTCTAAGATTGCACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
2455386 CTCGAGCATCTGCTGGTGCCGCATTTTTCTTCGCCGGGGCTCCATCG-C---CA--AAG-CATCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC-ACATCGTCGGACATCGCGACATTG
* * ** * *
2455444 TCGGAGAACTTGACCGGCGGCATTAAGGTTCCGACGATTGGGGGGGTC-AGGGGGGTTGTGCGCA
130 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGG-TGTGCGCA
* * *
2455508 CATGATGTGCAATGGGTACTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
2455573 AGAACTCACACCTCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAATGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
2455638 GTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
2455703 ATTCTTTTG-GGATTGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCC
388 ATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * ** *
2455767 TTCCAAAAAAATTTTAAAAGATCCCGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAC
452 TTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
*
2455832 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
517 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
2455897 AAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
582 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * **
2455962 ACGGCTTGCGCTTCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCCGTTCGTTTC
647 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCC-G--C--TCGTTTC
* * * * *
2456027 GTCAGTTGGCTTAGGCATATGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGATGGTTGCGG
707 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * *
2456092 CAGCAGGATCAGTAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCT
772 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
2456157 GGCCGACTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
837 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
2456222 CTAA
902 CTAA
* * * * * * *
2456226 GCATGCAGAGTTAATTCCCAGTCTAGGATCGAACCGAACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2456291 CTCGGGCATGTGTTGGTGCTGCATTTGTT-TTCG-TCGGGGCAC--CATC-G-C-T-G-GAGCAT
66 CTCGAGCATGTGCTGGTGCCGCATTT-TTCTTCGCT-GGGGCACATCGTCGGACATCGCGA-CAT
* * * * * **
2456347 CGTCGGAGAACCTGATCAGCGGCATTGAGGTTCCGGTGATC-GGGGGGCCGAGGGGGTGTGCGCA
128 TGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCA
* * * * * *
2456411 CATGATGTGTGATGAGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTTATCAAACCTAG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
2456476 AGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
2456541 GTCTGAATTGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
2456606 ATTTTTTTGTGCATGCCAACAAAAATA-AAGGATCAAGTCTACCAAGTTTGAGGCCAAAACT-CT
388 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** *
2456669 TTAAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
453 TCCA-AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
* *
2456734 GAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
517 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
2456799 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTACCGATCC
582 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
2456864 ACAGCTTGTGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGTCCTCCAGCCCGCCCGCTCGTTT
647 ACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCC--AC-CC-GCCCG-CCGCTCGTTT
* * * *
2456928 CGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG
706 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * *
2456993 GCAGC-GGATCGGCAACACGCAGAGGGGGACCCGACCGATCCCTGACTTGTGCATCCCGCCCCTC
771 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
2457057 TGGCCGACTGAGCGCCCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
836 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
2457122 TCTAA
901 TCTAA
* ** * *
2457127 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGTAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2457192 CTC-AGGCATGTGCCGGTGCCGTATTTTTCTTCG-TAGGGGCACCATCGTCGG--A----G-CAT
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCA-CATCGTCGGACATCGCGACAT
* * * * * *
2457248 CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGTGGGCCGTGGGGGTGTGTGCA
128 TGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCA
* *
2457313 CATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
2457378 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
2457443 GTCTGAAATGGGGACACTTTTTTCAAATAGTCAC-AAATCGTGTACACTTAGAGTTTTTAGCTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
2457507 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
388 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * * * *
2457572 TCTGAAAAAATTTAAAAAAATCCCGAACCATAAAAATTTTTGAAAATCGTGAAAAATATAAAACG
453 TCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
* * * * *
2457637 AGTCTTCTTACCATGAAATTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTAAAAGCCATA
518 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** ** * *
2457702 AAAATCTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCA
583 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
2457767 CAGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGTCCACCCGTCCGC
648 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G--C--CCACCCG----CCCG-CCGC
* ** * *
2457832 TCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTGGAAGATCAGATCAGACTGAGG
700 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * ** * * **
2457897 GTTGTGGCAGAAGGATAAGCAGCAGGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
765 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* ** *
2457962 CCCCTCAGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
830 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
2458027 TCCCAGTCTAA
895 TCCCAGTCTAA
* *
2458038 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2458103 CT-TAGGCATATGCTGGTGCCGCATTTTTCTTCGCCGGGCCACCATCGTCGG--A----G-C-TT
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCA-CATCGTCGGACATCGCGACATT
* * * * *
2458159 CGTCGGAGAACCTAACCGGCGGCATTGGGGTTCCAATGATC-GGGGGGCCG-GGGGGTTGTGTGC
129 -GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGG-TGTGCGC
*
2458222 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTT
192 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
2458286 GAGAACTCACACCCCTTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
257 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
2458351 TGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
322 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
2458416 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCT
387 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * **
2458481 TTTCGAAAAAATTTTAAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
452 TTCCAAAAAAATTTT-AAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
*
2458546 CGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
516 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
2458611 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATC
581 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
2458676 GACGGCTTGCGCATCCCGTATCTCTGGCCGACGTAGTGCCCGCCCGTCCACTCGCCCGCCTGCTC
646 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G--C--CCACCCGCCCGCC-GCTC
* * * *
2458741 GTTTCGTCAGTTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
702 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * ** * * *
2458806 TGCAGTAGTCA-GATCTGTAACACATAGAGGGGGACCCGGCCGATCCACGGCTTGTGCATCCCGC
767 TGCGGCAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* *
2458870 CCCTCTGGCCGACTGAACGCCCGTACAG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
831 CCCTCTGGCCGACTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
2458934 TCCTAGTCTAA
895 TCCCAGTCTAA
* * * * **
2458945 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGTAGCACACACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * **
2459010 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCTCCAGGGCACCATCGCCGG--A--GCTTCA---
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCA-CATCGTCGGACATCGCGACATTG
* * *
2459068 CCGGAGAACTTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACA
130 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* * *
2459132 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCACATCAAACCTCGAG
195 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
2459197 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
2459262 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
325 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * **
2459327 TTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTATGGCCAAAACTCCTT
389 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
2459392 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGA
454 CCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
* * *
2459457 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATGA
519 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
2459522 AAATGGCATTGGTATGCA-AAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCAT
584 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
2459586 AGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGACCGCCCGCCCGCTCGTTTCAT
649 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CAC--CCGCCCG-CCGCTCGTTTCGT
* * *
2459651 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTGCAGTA
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* *
2459716 GCAGGATCAGCAGCACGCAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
774 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
2459781 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AG--T
839 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
2459833 --
904 AA
2459833 ---T-C--A-TT-A---CCAGT-TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** *
2459886 CTCGAAAATGTGCTGGTGCCGCA-TTTTCTTCGCCAGGGTACCATCGTCGGAGCAT--CG----T
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCA-CATCGTCGGA-CATCGCGACATT
* ** *
2459944 --CGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGAGGGGCCGAGGGGGGTGTGCGCA
129 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGGTGTGCGCA
* *
2460007 CATGATATGTGATGGGTGCTGGTACTTGGCCCTTA-ATTGGCCCCCTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
2460071 AGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTCTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
2460136 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
323 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
2460201 ATGTTTTTGTGCATACCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
388 ATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
2460266 TTTCAAAAAAATTTTAAAAAATCCTGAACCAT-AAAACTTTTGAAAATCGTGAAAAATAGAAAAC
452 TTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
* * *
2460330 GAGTCGTCATGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCAT
517 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
2460395 AAAAATGGCTTTGGCACGCTGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCC
582 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
2460460 ACGGCTT-CTGTATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCGCCCGCCCGCTCGTTTC
647 ACGGCTTGC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCA--C-CCGCCCG-CCGCTCGTTTC
* * ** * *
2460524 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTAGACCAAGGGTTGCAG
707 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * * * * *
2460589 CAGCAGGATCGGCAACACGTAGATGGGGACCTGACCGATCCCCAGCTTGCGCATCCCACCTCTGT
772 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
2460654 GGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAAT
837 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
2460719 CTAA
902 CTAA
*
2460723 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2460788 CTCTG-GCATATGCTGGTGCCGCA-----CTT---T--------T--T-----TTCGC--CA---
66 CTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACATCGTCGGACATCGCGACATTG
* * * * *
2460824 ---GAGAACCTGACCTGCGGCATTGGGGTTCTGACGATCAGAGGGGCCG-GGGGGTGTGCGCGCA
130 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* *
2460885 TGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
195 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
2460950 AACTCACA-CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAATGTGT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
2461014 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAT
325 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
2461079 TTTTTTGTGCGTGGCAAC--AAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATC
390 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * ** *
2461142 CAAAAAATTTTTAAAAAAT-CCGAAACCACAAAAGGTTTCAAAAATCTTGAAAAATAGAAAACGA
455 CAAAAAAATTTTAAAAAATCCCG-AACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
* *
2461206 GTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAA
519 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
2461271 AAATGGCATTGGTATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTAT-GATTCAC
584 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
2461335 GGTTTGCGCATCCCGTCTCTCTGGTCGGACGTAGTGCCCGCCCGCCCTTCCGCTCGTTTCATCGG
649 GGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCACCCGCCC-GCCGCTCGTTTCGTCGG
* *
2461400 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGC-G--GC-
712 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * ** ** * *
2461461 --A---GC-GCA--TAGAGGGGGACACGGCTTATCCTTGACTTACGCATCCCGCCCCTCTGGCCG
777 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * *
2461518 GCTGAGCACCCGCACGTTCGGTTCATGGATTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
842 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
2461582 G
1 G
2461583 ATTGGATGGG
Statistics
Matches: 9686, Mismatches: 1534, Indels: 1171
0.78 0.12 0.09
Matches are distributed among these distances:
844 1 0.00
845 2 0.00
846 1 0.00
847 1 0.00
848 2 0.00
849 1 0.00
852 2 0.00
853 1 0.00
856 2 0.00
857 1 0.00
858 1 0.00
859 92 0.01
860 2 0.00
861 4 0.00
862 2 0.00
863 1 0.00
865 5 0.00
867 1 0.00
868 2 0.00
870 258 0.03
871 632 0.07
872 16 0.00
873 343 0.04
874 362 0.04
875 379 0.04
876 531 0.05
877 93 0.01
878 43 0.00
879 141 0.01
880 221 0.02
881 91 0.01
882 1 0.00
883 7 0.00
884 2 0.00
885 2 0.00
886 3 0.00
888 3 0.00
889 4 0.00
890 1 0.00
891 257 0.03
892 14 0.00
893 5 0.00
894 3 0.00
895 42 0.00
896 10 0.00
897 36 0.00
898 291 0.03
899 2 0.00
900 56 0.01
901 643 0.07
902 971 0.10
903 495 0.05
904 26 0.00
905 135 0.01
906 15 0.00
907 442 0.05
908 294 0.03
909 633 0.07
910 301 0.03
911 458 0.05
912 3 0.00
913 57 0.01
914 250 0.03
915 5 0.00
916 4 0.00
917 8 0.00
918 6 0.00
919 2 0.00
920 2 0.00
921 3 0.00
922 1 0.00
923 2 0.00
925 16 0.00
926 4 0.00
927 17 0.00
928 16 0.00
929 10 0.00
930 13 0.00
931 8 0.00
933 2 0.00
934 22 0.00
935 4 0.00
936 2 0.00
937 4 0.00
938 9 0.00
939 2 0.00
940 4 0.00
941 17 0.00
942 10 0.00
943 3 0.00
944 10 0.00
946 2 0.00
947 3 0.00
948 2 0.00
949 2 0.00
950 9 0.00
951 4 0.00
952 4 0.00
954 1 0.00
955 2 0.00
956 5 0.00
957 4 0.00
958 8 0.00
959 8 0.00
960 1 0.00
961 2 0.00
962 3 0.00
963 3 0.00
964 1 0.00
965 3 0.00
966 4 0.00
968 1 0.00
969 7 0.00
970 4 0.00
971 10 0.00
972 9 0.00
973 1 0.00
975 4 0.00
976 9 0.00
977 11 0.00
978 9 0.00
979 12 0.00
980 12 0.00
981 8 0.00
982 21 0.00
983 12 0.00
984 1 0.00
985 8 0.00
986 6 0.00
987 7 0.00
988 8 0.00
989 2 0.00
990 14 0.00
991 2 0.00
992 8 0.00
993 8 0.00
994 5 0.00
995 9 0.00
996 3 0.00
997 22 0.00
998 16 0.00
999 5 0.00
1000 14 0.00
1001 6 0.00
1002 11 0.00
1003 15 0.00
1004 4 0.00
1005 1 0.00
1007 8 0.00
1008 5 0.00
1009 10 0.00
1010 5 0.00
1011 1 0.00
1012 1 0.00
1014 6 0.00
1015 2 0.00
1016 3 0.00
1018 3 0.00
1019 3 0.00
1021 9 0.00
1022 8 0.00
1023 2 0.00
1024 165 0.02
1025 194 0.02
1026 145 0.01
1027 108 0.01
1028 109 0.01
1029 87 0.01
1030 189 0.02
1031 147 0.02
1032 159 0.02
1033 98 0.01
1034 111 0.01
1035 98 0.01
1036 122 0.01
1037 98 0.01
1038 129 0.01
1039 138 0.01
1040 579 0.06
1041 170 0.02
1042 102 0.01
1043 79 0.01
1044 65 0.01
1045 59 0.01
1046 77 0.01
1047 80 0.01
1048 621 0.06
1049 262 0.03
1050 41 0.00
1051 66 0.01
1052 76 0.01
1053 157 0.02
1054 146 0.02
1055 94 0.01
1056 105 0.01
1057 49 0.01
1058 109 0.01
1059 34 0.00
1060 60 0.01
1061 108 0.01
1062 220 0.02
1063 67 0.01
1064 41 0.00
1065 41 0.00
1066 35 0.00
1067 53 0.01
1068 50 0.01
1069 87 0.01
1070 37 0.00
1071 17 0.00
1072 31 0.00
1073 28 0.00
1074 21 0.00
1075 54 0.01
1076 76 0.01
1077 51 0.01
1078 29 0.00
1079 81 0.01
1080 37 0.00
1081 35 0.00
1082 10 0.00
1083 20 0.00
1084 14 0.00
1085 65 0.01
1086 18 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (905 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACATCGTCGGACATCGCGACATTGC
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
AAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2451610 original size:26 final size:26
Alignment explanation
Indices: 2451574--2451626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2451564 GTTGACTTAG
2451574 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
2451600 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
2451626 G
1 G
2451627 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:2452667 original size:179 final size:179
Alignment explanation
Indices: 2452367--2452700 Score: 521
Period size: 179 Copynumber: 1.9 Consensus size: 179
2452357 GGGTTACGGA
* * **
2452367 CAGCAGGATCGGTAGCACACAGAGGGGGACCCGATCAATCGTCGACTTGCTCATCCCGCCCTTCT
1 CAGCAGGATCGGTAGCACACAGAAGGGGACCCGACCAATCCCCGACTTGCTCATCCCGCCCTTCT
* * *
2452432 GGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
66 GCCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
*
2452497 CTAAGGATAC-GAAGTTCAGTCTGAGATCAGACCGGATCGAGGGTTGCAG
131 CTAAGCATACAG-AGTTCAGTCTGAGATCAGACCGGATCGAGGGTTGCAG
* *
2452546 CAGCAGGATCGGTAGCACGCAGAAGGGGACCTGACCAATCCCC-AGCTTGCTCATCCCGCCCCTT
1 CAGCAGGATCGGTAGCACACAGAAGGGGACCCGACCAATCCCCGA-CTTGCTCATCCCG-CCCTT
2452610 -TGCCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
64 CTGCCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
*
2452674 GTCTAAGCATACAGAGTTCATTCTGAG
129 GTCTAAGCATACAGAGTTCAGTCTGAG
2452701 TCTAAGATCG
Statistics
Matches: 141, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
178 1 0.01
179 134 0.95
180 6 0.04
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (179 bp):
CAGCAGGATCGGTAGCACACAGAAGGGGACCCGACCAATCCCCGACTTGCTCATCCCGCCCTTCT
GCCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGCATACAGAGTTCAGTCTGAGATCAGACCGGATCGAGGGTTGCAG
Found at i:2452684 original size:26 final size:26
Alignment explanation
Indices: 2452654--2452706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2452644 GTTGACTTAG
2452654 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
2452680 GCATACAGAGTTCATTCTGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2452706 G
1 G
2452707 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2457131 original size:26 final size:26
Alignment explanation
Indices: 2457101--2457153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2457091 GTTGACTTAG
2457101 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2457127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2457153 G
1 G
2457154 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2458048 original size:26 final size:26
Alignment explanation
Indices: 2458012--2458064 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2458002 GTTAACTTAG
2458012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2458038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2458064 G
1 G
2458065 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2458955 original size:26 final size:26
Alignment explanation
Indices: 2458919--2458971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2458909 GTTGACTTAG
*
2458919 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2458945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2458971 G
1 G
2458972 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2460734 original size:26 final size:26
Alignment explanation
Indices: 2460697--2460749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2460687 GTTGACTTAC
2460697 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
2460723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2460749 G
1 G
2460750 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2463395 original size:873 final size:864
Alignment explanation
Indices: 2462086--2464609 Score: 3198
Period size: 873 Copynumber: 2.9 Consensus size: 864
2462076 CCCAGTCTAA
* * * * * * * *
2462086 GCATGCGGAGTTCATTCCCAATCTAAAATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCATTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCT-GG
** *
2462151 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---T-----CA-C-C-GGAGA
* * *
2462216 ACCTGACCGACGACATTGGGGTTTCGACGATCGGGTGGGCCGGGGGGTGGGTGCGCGCACATCAT
119 ACCTGACCGACGACATTGGGGTTCCG-CGATCGGGGGGGCC-GGGGGT--GT--GCGCACATGAT
2462281 GTGT-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
178 GT-TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
2462345 TCACA-CCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCGATTAAAGTGTCT
242 TCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCT
*
2462409 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTTAGCTGAATTT
306 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTAGAGTTTTTAGCTGAATTT
* * * *
2462474 TTTTGTGCATGCCAACAAAAATACAAAGATCATGTCTGCGAAGTTTGGGGCCAAAACACCTTCCA
371 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
2462539 CAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTC
436 -AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
2462604 GTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAT
500 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAT
* *
2462669 GGCATTGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCT
565 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
2462734 TGTGCATCTCGTCTCTCTGGGCGACGTAGTGCCCGCCCGCTTGCCCGCCCCCAGTGCCCGCTCAT
630 TGCGCATCCCGTCTCTCTGGGCGACGTAGTGCCCGCCCGC-TGCCCG--CCC---GCCCGCTCGT
** * *
2462799 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAA-CTGAGGGTT
689 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATC-GAAGCTT
* * ** *
2462863 ACGGCTGTAGGATTGGCAGCACGCAGAGGGGGATCC-GG-TCGATCCCCGACTTGCGAATCCCAC
753 ACGGCGGCAGGATCAGCAGCACACAGAGGGGGA-CCTGGCT-GATCCCCGACTTGCGAATCCCAC
*
2462926 CCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAG
816 CCCTCTGGCCGGCTGAGCCCCCGCACACTCGTTTCGTGGGTTGACTTAG
* *
2462975 GCATACGGAGTTCATTCCCATTCTAAGATCGGATTGGACTGAGGGTTGCGGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCATTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGG-
**
2463040 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGGT
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGAC
* *
2463105 GGCATTGGGGTTCCAGCAATCGGGGGGGCCGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGG
130 GACATTGGGGTTCC-GCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGG
* * *
2463170 CACTTGGCCCCTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAACTCACACCCCCTTAAAGA
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
2463235 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
259 GCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
2463300 TCAAATGGTCACAAAATCTTGTACACTTAGATTTTTTAACGGTATTTTTTTGTGCATGCCAACAA
324 TCAAATGGTCACAAAATCTTGCACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
2463365 AAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAATC
389 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATC
* ** * *
2463430 TCGAAAGGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTGC
453 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
2463495 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATGAAAATGGCATTGGCACGTAGAA
518 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGCAGAA
* * *
2463560 ATATGAAGATGTACCTAAACCCATCTACCACCCTATCGAT-CACGGCTTGCACATCCCGTCTCTC
582 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
2463624 TGGCCGGCGTAGT----GCCCG-T--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
647 TGGGCGACGTAGTGCCCGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
2463682 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGCTTGCGGCGGCAGGATCAGCAGCACAC
712 GGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAAGCTTACGGCGGCAGGATCAGCAGCACAC
* * * * * *
2463747 AGAGGGGGACCTGGCTGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGGCTTAGCGCCCGTAC
777 AGAGGGGGACCTGGCTGATCCCCGACTTGCGAATCCCACCCCTCTGGCCGGCTGAGCCCCCGCAC
*
2463812 ACTCGTTTCGTGGGTTGACTTTG
842 ACTCGTTTCGTGGGTTGACTTAG
* *
2463835 GCATACAGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCA-T-T---C-TA---AG---A-T--C-G-----GATCG-----GAC
* * *
2463900 CGAGGGTTGCGGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGG
40 CGAGGGTTGCGGTAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * *
2463965 CACCATCACCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGATTCCGTGATCGGGGGGGT
104 ------CA-C----CATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGCGATCGGGGGGGC
* * * *
2464030 CGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTATCC
158 CGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
2464095 CTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCA
223 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCA
* *
2464160 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTC
288 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTA
* * * *
2464225 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT--AGGGATCACGTCTACCAAGCTTA
353 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * *
2464288 GGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCTTG
418 GGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
2464353 AAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTGAGGGACCATTGTATGA
482 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
2464418 ATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
547 ATTTACAAGCCA-TAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
2464483 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCAGCGTAATGCCCG-CC-C-GCCC
611 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGGCGA-CGTAGTGCCCGCCCGCTGCCC
* * * * *
2464544 GTCCG-CCACTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGAC
675 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
2464608 CG
740 CG
2464610 GACCAGGGTT
Statistics
Matches: 1431, Mismatches: 146, Indels: 107
0.85 0.09 0.06
Matches are distributed among these distances:
859 2 0.00
860 176 0.12
861 3 0.00
862 1 0.00
863 3 0.00
865 4 0.00
866 2 0.00
867 1 0.00
869 7 0.00
872 2 0.00
873 385 0.27
874 64 0.04
875 3 0.00
876 1 0.00
877 6 0.00
878 38 0.03
879 2 0.00
880 1 0.00
881 6 0.00
886 62 0.04
887 2 0.00
888 2 0.00
889 93 0.06
892 2 0.00
893 1 0.00
894 206 0.14
895 29 0.02
896 229 0.16
897 33 0.02
898 58 0.04
899 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACCGACG
ACATTGGGGTTCCGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGCACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGG
CGACGTAGTGCCCGCCCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGAATCGAAGCTTACGGCGGCAGGATCAGCAGCACACAGAG
GGGGACCTGGCTGATCCCCGACTTGCGAATCCCACCCCTCTGGCCGGCTGAGCCCCCGCACACTC
GTTTCGTGGGTTGACTTAG
Found at i:2463864 original size:26 final size:26
Alignment explanation
Indices: 2463835--2463887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2463825 GTTGACTTTG
*
2463835 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
2463861 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2463887 G
1 G
2463888 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2465868 original size:117 final size:116
Alignment explanation
Indices: 2465660--2466113 Score: 630
Period size: 117 Copynumber: 3.9 Consensus size: 116
2465650 TCTTGTGTAG
* * **
2465660 GGAAAATTGATACTTTCAAATTTTCCCTAAAAATATTTTTTT-GAAA-TTTATTTTTTAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTCAAGGAAAA
*
2465723 TTGATACTTTCAACTTTTCCCTAAAAATAATTTTTGGAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
2465774 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTT-ATTTTCAAGGAAA
2465839 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* *
2465891 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTA-TTTCAAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTC-AAGGAAA
* *
2465955 ATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCT-AAAAA-------TATTTTTTGGAAATTTATTTTTAA
* * * * * *
2466014 GGAAAATGGATACTTTCAACTTTTCTCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTT-ATTTTCAAGGAAA
*
2466078 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
65 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
2466114 TTGGAACTTT
Statistics
Matches: 306, Mismatches: 19, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
114 40 0.13
115 11 0.04
116 42 0.14
117 111 0.36
122 11 0.04
123 85 0.28
124 6 0.02
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTCAAGGAAAA
TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:2465932 original size:59 final size:58
Alignment explanation
Indices: 2465660--2466119 Score: 604
Period size: 57 Copynumber: 7.8 Consensus size: 58
2465650 TCTTGTGTAG
* * *
2465660 GGAAAATTGATACTTTCAAATTTTCCCTAAAAATATTTTTTT-GAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* *
2465717 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-ATTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
*
2465774 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
*
2465834 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* **
2465891 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTATTTTTAA
* * *
2465950 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA------TATTTTTTTGGAAATTTATTTTTAA
* * * * * *
2466014 GGAAAATGGATACTTTCAACTTTTCTCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
*
2466073 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
2466120 CTTTTGATTT
Statistics
Matches: 358, Mismatches: 29, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
56 5 0.01
57 133 0.37
58 17 0.05
59 103 0.29
60 41 0.11
61 8 0.02
64 50 0.14
65 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:2466049 original size:123 final size:123
Alignment explanation
Indices: 2465869--2466106 Score: 365
Period size: 123 Copynumber: 1.9 Consensus size: 123
2465859 CCTAAAAATA
* * *
2465869 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA--TTTTTC
*
2465934 GAAAA-TTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTT
64 GAAAATTTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTT
* *
2465992 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCTCTAAAAATATTTTTCGA
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCGA
*
2466057 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
2466107 ATTTTTTTTG
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
121 10 0.10
122 3 0.03
123 88 0.84
124 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (123 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCGA
AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTT
Found at i:2466176 original size:16 final size:16
Alignment explanation
Indices: 2466153--2466213 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
2466143 ATAGAATAAT
*
2466153 AAAA-AAATAAAAGTG
1 AAAATAAATAAAAGTA
*
2466168 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
2466184 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
2466200 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
2466214 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.11
16 26 0.68
17 8 0.21
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:2466182 original size:6 final size:6
Alignment explanation
Indices: 2466155--2466231 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
2466145 AGAATAATAA
* * * *
2466155 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAAAT AAAGAAA AGTAAAAC
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A--AAAAT
* *
2466204 AAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
2466232 ATATTAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 41 0.72
7 3 0.05
8 3 0.05
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:2466192 original size:27 final size:25
Alignment explanation
Indices: 2466135--2466217 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 25
2466125 GATTTTTATT
*
2466135 TAAAGAAAATAGAATAATAA-AAAAA
1 TAAAGAAAATA-AATAAAAATAAAAA
2466160 TAAAAGTGAAAATAAATAAAAATAAAAA
1 T-AAA--GAAAATAAATAAAAATAAAAA
*
2466188 TAAAGAAAAGTAAAACAAAAATAAAAA
1 TAAAGAAAA-T-AAATAAAAATAAAAA
2466215 TAA
1 TAA
2466218 GATAAAGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.12
26 4 0.08
27 27 0.54
28 13 0.26
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (25 bp):
TAAAGAAAATAAATAAAAATAAAAA
Found at i:2466222 original size:11 final size:11
Alignment explanation
Indices: 2466140--2466297 Score: 60
Period size: 11 Copynumber: 13.8 Consensus size: 11
2466130 TTATTTAAAG
*
2466140 AAAATAGAATA
1 AAAATAAAATA
2466151 ATAAA-AAAATA
1 A-AAATAAAATA
*
2466162 AAAGTGAAAATA
1 AAAAT-AAAATA
*
2466174 AATA-AAAATA
1 AAAATAAAATA
*
2466184 AAAAT-AAAGA
1 AAAATAAAATA
* *
2466194 AAAGTAAAACA
1 AAAATAAAATA
2466205 AAAATAAAA-A
1 AAAATAAAATA
*
2466215 TAAGATAAAGATAA
1 -AAAATAAA-AT-A
2466229 AAAATATTAAATA
1 AAAATA--AAATA
*
2466242 AAACCTAATCTAATA
1 AAA-ATAA---AATA
*
2466257 AATATAAAA-A
1 AAAATAAAATA
*
2466267 CAAATAAAATA
1 AAAATAAAATA
2466278 AACAA-ATAAATA
1 AA-AATA-AAATA
2466290 AAAA-AAAA
1 AAAATAAAA
2466298 CCTGGAGCGG
Statistics
Matches: 112, Mismatches: 17, Indels: 37
0.67 0.10 0.22
Matches are distributed among these distances:
10 31 0.28
11 34 0.30
12 22 0.20
13 9 0.08
14 8 0.07
15 8 0.07
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:2466224 original size:27 final size:28
Alignment explanation
Indices: 2466177--2466230 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
2466167 GAAAATAAAT
2466177 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
2466204 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
2466231 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:2466652 original size:20 final size:20
Alignment explanation
Indices: 2466629--2466666 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2466619 CATCGGATTT
*
2466629 TGGGTTTTGTCATCGAAATC
1 TGGGTTTTGTCACCGAAATC
*
2466649 TGGGTTTTTTCACCGAAA
1 TGGGTTTTGTCACCGAAA
2466667 GTTCACCGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (20 bp):
TGGGTTTTGTCACCGAAATC
Found at i:2467215 original size:34 final size:33
Alignment explanation
Indices: 2467111--2467283 Score: 93
Period size: 32 Copynumber: 5.4 Consensus size: 33
2467101 TCCAAAATAA
*
2467111 AAATCAAATAAATAA-AAAA-AATAATAGATAATT
1 AAAT-AAAT-AATAATAAAATAATAATATATAATT
* * * **
2467144 AGAGAAGATAATAA-AAAA-AATATTATAGGA-T
1 AAATAA-ATAATAATAAAATAATAATATATAATT
2467175 -AA-AAATAATAATAATAATAATAATATATAATT
1 AAATAAATAATAATAA-AATAATAATATATAATT
* **
2467207 AAATAAATAAAAATACAAA-AATAA-ATA-AAAC
1 AAATAAATAATAATA-AAATAATAATATATAATT
*
2467238 AAA-AAATAATAA-AAAATATATATTAT-TAATAAT
1 AAATAAATAATAATAAAATA-ATAATATATAAT--T
2467271 AAATAAATAATAA
1 AAATAAATAATAA
2467284 ATACATAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
28 10 0.09
29 6 0.06
30 14 0.13
31 19 0.18
32 23 0.21
33 14 0.13
34 21 0.19
35 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (33 bp):
AAATAAATAATAATAAAATAATAATATATAATT
Found at i:2467216 original size:31 final size:30
Alignment explanation
Indices: 2467116--2467284 Score: 95
Period size: 30 Copynumber: 5.6 Consensus size: 30
2467106 AATAAAAATC
*
2467116 AAATAAATAA-AA-AAAATAATAGATAATT
1 AAATAAATAATAATAAAATAATATATAATT
* *
2467144 AGAGAAGATAATAA-AAAA-AATATTATAGGA-T
1 AAATAA-ATAATAATAAAATAATA-TATA--ATT
*
2467175 AAAAATAATAATAATAATAATAATATATAATT
1 AAATA-AATAATAATAA-AATAATATATAATT
* * *
2467207 AAATAAATAAAAATACAAA-AATAAATAA-A
1 AAATAAATAATAATA-AAATAATATATAATT
* *
2467236 ACAAAAAATAATAA-AAAAT-ATATATTATT
1 A-AATAAATAATAATAAAATAATATATAATT
2467265 AATAATAAATAAATAATAAA
1 -A-AATAAAT-AATAATAAA
2467285 TACATAGGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 30
0.70 0.10 0.19
Matches are distributed among these distances:
28 13 0.12
29 10 0.09
30 34 0.31
31 28 0.26
32 13 0.12
33 6 0.06
34 4 0.04
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (30 bp):
AAATAAATAATAATAAAATAATATATAATT
Found at i:2467310 original size:75 final size:75
Alignment explanation
Indices: 2467175--2467328 Score: 170
Period size: 75 Copynumber: 2.1 Consensus size: 75
2467165 ATTATAGGAT
*
2467175 AAAAATAATAATAATAATAATAATATATAATTAAATAAATAAAAATACAAAAATAAATAAAACAA
1 AAAAATAATAATAATAATAATAATAAATAATTAAATAAATAAAAATACAAAAATAAATAAAACAA
*
2467240 AA-AATAATA
66 AATAAAAATA
* * * * * * *
2467249 AAAAATATATATTATTAATAATAAATAAATAA-TAAATACATAGGATATACATAAA-ACATAAAA
1 AAAAATA-ATAATAATAATAAT-AATAAATAATTAAATAAATA-AAAATACAAAAATAAATAAAA
*
2467312 TAAAATAAAAATA
63 CAAAATAAAAATA
2467325 AAAA
1 AAAA
2467329 TAAAAATGAC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
74 7 0.11
75 32 0.48
76 27 0.41
ACGTcount: A:0.70, C:0.03, G:0.01, T:0.25
Consensus pattern (75 bp):
AAAAATAATAATAATAATAATAATAAATAATTAAATAAATAAAAATACAAAAATAAATAAAACAA
AATAAAAATA
Found at i:2467321 original size:17 final size:17
Alignment explanation
Indices: 2467299--2467333 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
2467289 TAGGATATAC
2467299 ATAAAACAT-AAAATAAA
1 ATAAAA-ATAAAAATAAA
2467316 ATAAAAATAAAAATAAA
1 ATAAAAATAAAAATAAA
2467333 A
1 A
2467334 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
ATAAAAATAAAAATAAA
Found at i:2467324 original size:6 final size:6
Alignment explanation
Indices: 2467299--2467335 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
2467289 TAGGATATAC
2467299 ATAAAA CAT-AAA AT-AAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA -ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
2467336 GACAAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 7 0.24
6 20 0.69
7 2 0.07
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:2467611 original size:18 final size:18
Alignment explanation
Indices: 2467588--2467631 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
2467578 ATAGAGGTAA
2467588 CTTTTTTTCATTTTTTTG
1 CTTTTTTTCATTTTTTTG
** *
2467606 CTTTTTTTGTTTTTTTTT
1 CTTTTTTTCATTTTTTTG
2467624 CTTTTTTT
1 CTTTTTTT
2467632 TTTAAATTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.02, C:0.09, G:0.05, T:0.84
Consensus pattern (18 bp):
CTTTTTTTCATTTTTTTG
Found at i:2467632 original size:9 final size:9
Alignment explanation
Indices: 2467589--2467632 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
2467579 TAGAGGTAAC
2467589 TTTTTTTCAT
1 TTTTTTTC-T
*
2467599 TTTTTTGCT
1 TTTTTTTCT
2467608 TTTTTTGT-T
1 TTTTTT-TCT
2467617 TTTTTTTCT
1 TTTTTTTCT
2467626 TTTTTTT
1 TTTTTTT
2467633 TTAAATTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 1 0.03
9 22 0.73
10 7 0.23
ACGTcount: A:0.02, C:0.07, G:0.05, T:0.86
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:2467728 original size:99 final size:99
Alignment explanation
Indices: 2467615--2467835 Score: 327
Period size: 99 Copynumber: 2.2 Consensus size: 99
2467605 GCTTTTTTTG
* *
2467615 TTTTTTTTTCTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGA
1 TTTTTTTTTCTTTTTTTTTTAAA-TGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACATTGAGA
*
2467680 AACATAAACAAAGCTCCTCTAAATAGAGGTAA-TT
65 AACATAAACAAAGCTCCTCTAAATAGAGGCAACTT
* *
2467714 TTTTTTTTTGTTTTTTTTTTTAAATGATCAAAGCTCTTCTAAGCAGAGGCTCAATGACATTGAGA
1 TTTTTTTTT-CTTTTTTTTTTAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACATTGAGA
**
2467779 AACATAAATGAAGCTCCTCTAAATAGAGGCAACTT
65 AACATAAACAAAGCTCCTCTAAATAGAGGCAACTT
*
2467814 TTTTGTTTTTTTTTGTTTTTTT
1 TTTT-TTTTTCTTT-TTTTTTT
2467836 TTTTAAAAGC
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
99 76 0.68
100 23 0.21
101 12 0.11
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (99 bp):
TTTTTTTTTCTTTTTTTTTTAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACATTGAGAA
ACATAAACAAAGCTCCTCTAAATAGAGGCAACTT
Found at i:2467838 original size:11 final size:10
Alignment explanation
Indices: 2467812--2467837 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2467802 TAGAGGCAAC
2467812 TTTTTTGTTT
1 TTTTTTGTTT
2467822 TTTTTTGTTT
1 TTTTTTGTTT
2467832 TTTTTT
1 TTTTTT
2467838 TTAAAAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:2467938 original size:42 final size:41
Alignment explanation
Indices: 2467844--2468038 Score: 309
Period size: 42 Copynumber: 4.7 Consensus size: 41
2467834 TTTTTTAAAA
* * *
2467844 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATT
2467885 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCATGACTTTGG-AAAGTAAATT
*
2467927 GCTCCTTTAAACAGAGGCACCATGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATT
* **
2467968 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCATGAC-TTTGGAAAGTAAATT
2468010 GCTCCTCTAAACAGAGGCACCATGACTTT
1 GCTCCTCTAAACAGAGGCACCATGACTTT
2468039 CCCCTCTAAA
Statistics
Matches: 143, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
41 65 0.45
42 78 0.55
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATT
Found at i:2467983 original size:83 final size:83
Alignment explanation
Indices: 2467844--2468038 Score: 327
Period size: 83 Copynumber: 2.3 Consensus size: 83
2467834 TTTTTTAAAA
* * * *
2467844 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
2467909 ACTTTGGAAAAGTAAATT
66 ACTTTGAAAAAGTAAATT
*
2467927 GCTCCTTTAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
2467992 ACTTTTAAAAAGTAAATT
66 ACTTTGAAAAAGTAAATT
2468010 GCTCCTCTAAACAGAGGCACCATGACTTT
1 GCTCCTCTAAACAGAGGCACCATGACTTT
2468039 CCCCTCTAAA
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 104 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAAGTAAATT
Found at i:2468065 original size:28 final size:28
Alignment explanation
Indices: 2468013--2468066 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
2468003 GTAAATTGCT
**
2468013 CCTCTAAACAGAGGCACCATGACTTTCC
1 CCTCTAAACAGAGGCACCACAACTTTCC
*
2468041 CCTCTAAATAGAGGCACCACAACTTT
1 CCTCTAAACAGAGGCACCACAACTTT
2468067 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACAACTTTCC
Found at i:2468086 original size:41 final size:42
Alignment explanation
Indices: 2468041--2468125 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
2468031 ATGACTTTCC
*
2468041 CCTCTAAATAGAGGCACCACAAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
*
2468082 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
2468124 CC
1 CC
2468126 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
Found at i:2468092 original size:69 final size:70
Alignment explanation
Indices: 2467971--2468107 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 70
2467961 GTAAATTGCT
* *
2467971 CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGAC
1 CCTCTAAACAGAGGCACCACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
2468036 TTTCC
66 TTTCC
* **
2468041 CCTCTAAATAGAGGCACCACAAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
2468105 TTT
66 TTT
2468108 TGGAAAGTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
69 41 0.66
70 21 0.34
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (70 bp):
CCTCTAAACAGAGGCACCACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:2468431 original size:43 final size:42
Alignment explanation
Indices: 2468325--2468461 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
2468315 TGAAAGATCC
** * *
2468325 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
2468368 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
2468411 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
2468454 TCATTTGA
1 TCATTTGA
2468462 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:2468693 original size:22 final size:22
Alignment explanation
Indices: 2468645--2468703 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
2468635 GGTTTCACTC
2468645 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
2468668 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
2468689 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
2468704 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:2469797 original size:19 final size:19
Alignment explanation
Indices: 2469775--2469842 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 19
2469765 TTTGAATCTC
2469775 TTTTTTTCATTTTCTCATT
1 TTTTTTTCATTTTCTCATT
*
2469794 TTTTTCTT-TTTTTCTCATT
1 TTTTT-TTCATTTTCTCATT
*
2469813 TTTTTTTCATCATCTTCTCTTT
1 TTTTTTTCAT--T-TTCTCATT
2469835 TTTTTTTC
1 TTTTTTTC
2469843 TCATTTTTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 2 0.05
19 21 0.51
20 2 0.05
21 1 0.02
22 15 0.37
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTTCATTTTCTCATT
Found at i:2469830 original size:22 final size:21
Alignment explanation
Indices: 2469775--2469846 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
2469765 TTTGAATCTC
*
2469775 TTTTTT-TCATTTTCTCATTT
1 TTTTTTCTCATCTTCTCATTT
*
2469795 TTTTCTT-T--TTTTCTCATTTT
1 TTTT-TTCTCATCTTCTCA-TTT
*
2469815 TTTTT-CATCATCTTCTCTTTT
1 TTTTTTC-TCATCTTCTCATTT
2469836 TTTTTTCTCAT
1 TTTTTTCTCAT
2469847 TTTTCATCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
19 9 0.21
20 12 0.28
21 15 0.35
22 7 0.16
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTTCTCATCTTCTCATTT
Found at i:2473915 original size:59 final size:59
Alignment explanation
Indices: 2473757--2474116 Score: 390
Period size: 59 Copynumber: 6.0 Consensus size: 59
2473747 TCTTGTGTAG
* *
2473757 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTTGATTTTTAA
* * *
2473817 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATA-TTTTTTGGAAATTT-ATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTGATTTTTAA
* **
2473874 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTGATTTTTAA
* * *
2473933 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTTTGAAAATTT-ATTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---------TATTTTTTTGGAAATTTGATTTT
2473997 TAA
57 TAA
* * * ** *
2474000 GGAAAATGGATACTTTCAACTTTTCTCTAAAAATA-TTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTTGATTTTTAA
* *
2474059 GGAAGATTGATACTTTCAAC-TTTCCCCAAAAATATTTTTTTTGGAACTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTGATTTTTA
2474117 TTAAAGAAAA
Statistics
Matches: 255, Mismatches: 30, Indels: 31
0.81 0.09 0.10
Matches are distributed among these distances:
57 47 0.18
58 19 0.07
59 96 0.38
60 42 0.16
67 50 0.20
68 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTGATTTTTAA
Found at i:2473974 original size:117 final size:117
Alignment explanation
Indices: 2473757--2473966 Score: 345
Period size: 117 Copynumber: 1.8 Consensus size: 117
2473747 TCTTGTGTAG
* *
2473757 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTGATTTTCAAGGAAA
*
2473822 ATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTGGAAATTTATTTTTTA
66 ATTGATACTTTCAACTTTTTCCTAAAAATACTTTTTGGAAATTTATTTTTTA
*
2473874 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-A-TTTCAAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTGATTTTC-AAGGAA
2473937 AATTGATACTTTCAAC-TTTTCCTCAAAAAT
65 AATTGATACTTTCAACTTTTTCCT-AAAAAT
2473967 CCCTTTTTTT
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
115 11 0.12
116 29 0.33
117 48 0.55
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTTCCTAAAAATACTTTTTGGAAATTTATTTTTTA
Found at i:2474100 original size:126 final size:126
Alignment explanation
Indices: 2473852--2474091 Score: 351
Period size: 126 Copynumber: 1.9 Consensus size: 126
2473842 CCTAAAAATA
* * * **
2473852 TTTTTTGGAAATTTATTTTTTAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTCA
*
2473917 GAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTT
66 GAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTTT
* *
2473978 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCTCTAAAAATA-TTTTTCA
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTCA
* *
2474042 GAAATTTTGATTTTC-AAGGAAGATTGATACTTTCAAC-TTTCCCCAAAAAT
66 GAAAATTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
2474092 ATTTTTTTTG
Statistics
Matches: 102, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
125 24 0.24
126 74 0.73
127 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (126 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTCA
GAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTTT
Found at i:2474154 original size:15 final size:15
Alignment explanation
Indices: 2474135--2474184 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
2474125 AATAGAATAA
2474135 TAAAA-AAATAAAAG
1 TAAAATAAATAAAAG
*
2474149 TGAAAATAAATAAAAA
1 T-AAAATAAATAAAAG
*
2474165 TAAAATAAAGAAAAG
1 TAAAATAAATAAAAG
2474180 TAAAA
1 TAAAA
2474185 AAAAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 1 0.03
15 21 0.68
16 9 0.29
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (15 bp):
TAAAATAAATAAAAG
Found at i:2474165 original size:6 final size:6
Alignment explanation
Indices: 2474138--2474213 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
2474128 AGAATAATAA
* * *
2474138 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAATAA AGAAAAGT AAAAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT A-AAAA-T AAAAAT
* *
2474186 AAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
2474214 ATATTAAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
4 4 0.07
5 9 0.16
6 32 0.57
7 7 0.12
8 4 0.07
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:2474172 original size:11 final size:11
Alignment explanation
Indices: 2474138--2474212 Score: 73
Period size: 11 Copynumber: 6.9 Consensus size: 11
2474128 AGAATAATAA
2474138 AAAAATAAAAGT
1 AAAAATAAAA-T
*
2474150 GAAAAT-AAAT
1 AAAAATAAAAT
2474160 AAAAATAAAAT
1 AAAAATAAAAT
* *
2474171 AAAGA-AAAGT
1 AAAAATAAAAT
*
2474181 AAAAAAAAAAT
1 AAAAATAAAAT
*
2474192 AAAAATAAGAT
1 AAAAATAAAAT
*
2474203 AAAGATAAAA
1 AAAAATAAAA
2474213 AATATTAAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
10 14 0.27
11 32 0.63
12 5 0.10
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:2474190 original size:27 final size:27
Alignment explanation
Indices: 2474123--2474226 Score: 86
Period size: 31 Copynumber: 3.6 Consensus size: 27
2474113 TTTATTAAAG
*
2474123 AAAATAGAATAATAAAAAAATAAAAGTGAAA
1 AAAATA-AA-AATAAAAAAAGAAAAGT--AA
2474154 ATAAATAAAAATAAAATAAAGAAAAGT-A
1 A-AAATAAAAATAAAA-AAAGAAAAGTAA
2474182 AAAA-AAAAATAAAAATAAGATAAAGATAA
1 AAAATAAAAATAAAAA-AAGA-AAAG-TAA
*
2474211 AAAATATTAAATAAAA
1 AAAATA-AAAATAAAA
2474227 CCTAATCTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
25 1 0.02
26 14 0.22
27 7 0.11
28 3 0.05
29 5 0.08
30 8 0.13
31 20 0.32
32 5 0.08
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (27 bp):
AAAATAAAAATAAAAAAAGAAAAGTAA
Found at i:2474194 original size:32 final size:31
Alignment explanation
Indices: 2474123--2474207 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 31
2474113 TTTATTAAAG
* *
2474123 AAAATAGAATAATAAAA-AAATAAAAGTGAAAA
1 AAAATA-AA-AATAAAATAAAGAAAAGTAAAAA
*
2474155 TAAATAAAAATAAAATAAAGAAAAGTAAAAAA
1 AAAATAAAAATAAAATAAAGAAAAGT-AAAAA
*
2474187 AAAATAAAAATAAGATAAAGA
1 AAAATAAAAATAAAATAAAGA
2474208 TAAAAAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 7 0.15
31 11 0.24
32 28 0.61
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.15
Consensus pattern (31 bp):
AAAATAAAAATAAAATAAAGAAAAGTAAAAA
Found at i:2474264 original size:13 final size:13
Alignment explanation
Indices: 2474246--2474283 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
2474236 ATAAATATAA
2474246 AAACAAATAAAAT
1 AAACAAATAAAAT
2474259 AAACAAAT-AAAT
1 AAACAAATAAAAT
*
2474271 AAAAAAATTAAAA
1 AAACAAA-TAAAA
2474284 AAAAAACCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 10 0.45
13 9 0.41
14 3 0.14
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (13 bp):
AAACAAATAAAAT
Found at i:2474286 original size:12 final size:11
Alignment explanation
Indices: 2474151--2474289 Score: 64
Period size: 11 Copynumber: 11.7 Consensus size: 11
2474141 AATAAAAGTG
*
2474151 AAAATAAATAA
1 AAAAAAAATAA
*
2474162 AAATAAAAT-A
1 AAAAAAAATAA
* *
2474172 AAGAAAAGTAA
1 AAAAAAAATAA
2474183 AAAAAAAATAA
1 AAAAAAAATAA
* *
2474194 AAATAAGATAA
1 AAAAAAAATAA
2474205 AGATAAAAAATATTA
1 A-A-AAAAAATA--A
**
2474220 AATAAAACCTAA
1 AA-AAAAAATAA
** *
2474232 TCTAATAAATATA
1 -AAAAAAAATA-A
*
2474245 AAAACAAATAA
1 AAAAAAAATAA
2474256 AATAAACAAATAA
1 AA-AAA-AAATAA
2474269 ATAAAAAAATTAA
1 A-AAAAAAA-TAA
2474282 AAAAAAAA
1 AAAAAAAA
2474290 CCTGGAGCGG
Statistics
Matches: 95, Mismatches: 22, Indels: 21
0.69 0.16 0.15
Matches are distributed among these distances:
10 7 0.07
11 30 0.32
12 26 0.27
13 21 0.22
14 9 0.09
15 2 0.02
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:2474287 original size:13 final size:12
Alignment explanation
Indices: 2474238--2474289 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
2474228 CTAATCTAAT
* *
2474238 AAATATAAAAAC
1 AAATAAAAAAAA
*
2474250 AAATAAAATAAAC
1 AAATAAAA-AAAA
2474263 AAATAAATAAAAA
1 AAATAAA-AAAAA
*
2474276 AATTAAAAAAAA
1 AAATAAAAAAAA
2474288 AA
1 AA
2474290 CCTGGAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 14 0.40
13 20 0.57
14 1 0.03
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATAAAAAAAA
Found at i:2475166 original size:6 final size:6
Alignment explanation
Indices: 2475155--2475296 Score: 58
Period size: 6 Copynumber: 22.0 Consensus size: 6
2475145 TATAGGATAA
* *
2475155 AAAAAT AAAAAT AAAAAT ATATAATT AAATAAAT AAAAAT ACAAAA- ATAAAT
1 AAAAAT AAAAAT AAAAAT A-A-AAAT -AA-AAAT AAAAAT A-AAAAT AAAAAT
* ** *
2475207 -AAAAT AAAAAAT ATAATATT ATTAAT AATAAAT AATAAAT ACATAGGAT
1 AAAAAT -AAAAAT A-AA-AAT AAAAAT AA-AAAT AA-AAAT A-A-A-AAT
* *
2475256 ATACAT AAAACAT -AAAAT -AAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
2475297 GACAAAGATA
Statistics
Matches: 107, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
5 14 0.13
6 47 0.44
7 28 0.26
8 14 0.13
9 4 0.04
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (6 bp):
AAAAAT
Found at i:2475191 original size:22 final size:23
Alignment explanation
Indices: 2475157--2475223 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 23
2475147 TAGGATAAAA
2475157 AAATAAAAATAAAAATATATAATT
1 AAAT-AAAATAAAAATATATAATT
* * *
2475181 AAAT-AAATAAAAATACAAAAAT
1 AAATAAAATAAAAATATATAATT
2475203 AAATAAAATAAAAA-ATATAAT
1 AAATAAAATAAAAATATATAAT
2475224 ATTATTAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
22 23 0.64
23 9 0.25
24 4 0.11
ACGTcount: A:0.75, C:0.01, G:0.00, T:0.24
Consensus pattern (23 bp):
AAATAAAATAAAAATATATAATT
Found at i:2475191 original size:28 final size:28
Alignment explanation
Indices: 2475096--2475247 Score: 90
Period size: 28 Copynumber: 5.5 Consensus size: 28
2475086 AATAAAAATC
* * *
2475096 AAATGAATAAAAA-AATAATAGATAATT
1 AAATAAATAAAAATAAAAATATATAATT
*
2475123 AGAA-AAGATAATAA-AAAAATATTATAGGA-T
1 A-AATAA-ATAAAAATAAAAATA-TATA--ATT
*
2475153 AAAAAAATAAAAATAAAAATATATAATT
1 AAATAAATAAAAATAAAAATATATAATT
*
2475181 AAATAAATAAAAATACAAAA-ATA-AATA
1 AAATAAATAAAAATA-AAAATATATAATT
* * *
2475208 AAATAAA-AAATATAATATTAT-TAA-T
1 AAATAAATAAAAATAAAAATATATAATT
2475233 -AATAAATAATAAATA
1 AAATAAATAA-AAATA
2475248 CATAGGATAT
Statistics
Matches: 100, Mismatches: 12, Indels: 27
0.72 0.09 0.19
Matches are distributed among these distances:
24 6 0.06
25 4 0.04
26 14 0.14
27 13 0.13
28 32 0.32
29 19 0.19
30 11 0.11
31 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.26
Consensus pattern (28 bp):
AAATAAATAAAAATAAAAATATATAATT
Done.