Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 17 of 129
Found at i:2475202 original size:18 final size:17
Alignment explanation
Indices: 2475155--2475224 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
2475145 TATAGGATAA
2475155 AAAAAT-AAAAATAAA-
1 AAAAATAAAAAATAAAT
* *
2475170 AATATATAATTAAATAAAT
1 AA-AAATAA-AAAATAAAT
2475189 AAAAATACAAAAATAAAT
1 AAAAATA-AAAAATAAAT
2475207 -AAAATAAAAAATATAAT
1 AAAAATAAAAAATA-AAT
2475224 A
1 A
2475225 TTATTAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
15 2 0.05
16 10 0.23
17 10 0.23
18 19 0.43
19 3 0.07
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAATAAAAAATAAAT
Found at i:2475237 original size:51 final size:46
Alignment explanation
Indices: 2475153--2475249 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
2475143 ATTATAGGAT
2475153 AAAAAAATAAAAATAAAAATATATAATTAAATAAATAA-AAATACA
1 AAAAAAATAAAAATAAAAATATATAATTAAATAAATAATAAATACA
2475198 AAAATAAAT-AAAATAAAAAATATAATATTATTAATAATAAATAATAAATACA
1 AAAA-AAATAAAAAT-AAAAATAT-ATA--ATT-A-AATAAATAATAAATACA
2475250 TAGGATATAC
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
45 9 0.20
46 12 0.27
47 3 0.07
49 3 0.07
50 1 0.02
51 9 0.20
52 7 0.16
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (46 bp):
AAAAAAATAAAAATAAAAATATATAATTAAATAAATAATAAATACA
Found at i:2475247 original size:14 final size:14
Alignment explanation
Indices: 2475158--2475247 Score: 57
Period size: 14 Copynumber: 6.6 Consensus size: 14
2475148 AGGATAAAAA
2475158 AATAAA-AATAAA-
1 AATAAATAATAAAT
*
2475170 AATATATAATTAAAT
1 AATAAATAA-TAAAT
*
2475185 AAATAAA-AATACAAA
1 -AATAAATAATA-AAT
2475200 AATAAAT-A-AAAT
1 AATAAATAATAAAT
*
2475212 AAAAAAT-ATAATAT
1 AATAAATAATAA-AT
* *
2475226 TATTAATAATAAAT
1 AATAAATAATAAAT
2475240 AATAAATA
1 AATAAATA
2475248 CATAGGATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
12 14 0.24
13 5 0.08
14 27 0.46
15 8 0.14
16 5 0.08
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAAATAATAAAT
Found at i:2475247 original size:44 final size:45
Alignment explanation
Indices: 2475151--2475247 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
2475141 ATATTATAGG
*
2475151 ATAAAAAAATAAAAATAAAAATATATAATTAAATAAATAAAAATAC
1 ATAAATAAATAAAAATAAAAATATATAATT-AATAAATAAAAATAC
* * *
2475197 AAAAATAAAT-AAAATAAAAA-ATATAATATTATTAATAATAAATA-
1 ATAAATAAATAAAAATAAAAATATATAAT-TAATAAATAA-AAATAC
2475241 ATAAATA
1 ATAAATA
2475248 CATAGGATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 20 0.45
45 16 0.36
46 8 0.18
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.27
Consensus pattern (45 bp):
ATAAATAAATAAAAATAAAAATATATAATTAATAAATAAAAATAC
Found at i:2475282 original size:17 final size:17
Alignment explanation
Indices: 2475260--2475294 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
2475250 TAGGATATAC
2475260 ATAAAACAT-AAAATAAA
1 ATAAAA-ATAAAAATAAA
2475277 ATAAAAATAAAAATAAA
1 ATAAAAATAAAAATAAA
2475294 A
1 A
2475295 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
ATAAAAATAAAAATAAA
Found at i:2475660 original size:26 final size:26
Alignment explanation
Indices: 2475630--2475689 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
2475620 GTTGACTTAG
*
2475630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
2475656 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
2475682 G-AT-CGGAC
1 GCATACGGAC
2475690 CGAATCGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 5 0.15
25 2 0.06
26 26 0.79
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:2476552 original size:26 final size:26
Alignment explanation
Indices: 2476522--2476574 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2476512 GTTGACTTAG
2476522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2476548 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2476574 G
1 G
2476575 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2477865 original size:902 final size:902
Alignment explanation
Indices: 2475369--2492188 Score: 14909
Period size: 903 Copynumber: 18.6 Consensus size: 902
2475359 GGGTGTCTAC
* * * *
2475369 ACCCACCTACCA-CCTATCGATCCA-AGCTTGCGCATCCCGTCTCTTTGGCTAGGCGTAGTGCCT
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCC
* * * * * *
2475432 G-CCGCCCGCCCGCCTTGCTCGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGCCGA
65 GCCCGCCCGCCCGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
2475496 AGATCAGACCAGA-CTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-AGCCG
129 AGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCG
* * * ** * *
2475559 ATCCCCGACTTGCGCATCCCGCCCTTTTGGTTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTG
192 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
2475624 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCAGTCTAAGATCGGA
257 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
2475689 CCGAATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCA
322 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
2475754 TCGGGGCACCATCGTCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG
387 TCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * *
2475819 AGGGGGCC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGC
451 -GAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
2475883 CCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGT
515 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
2475948 TTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
580 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
2476013 GTACACTTTGAGTTTTTAGCTGAAATTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTA
645 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
2476078 CCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCG-TAAAAAGCTTT
710 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAG-TTT
* * * *
2476142 -AAAAATCGTGACATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGC
773 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
2476206 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAATATATGAAGATGTGCCAA
838 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA-ATATGAAGATGTGCCTA
2476271 A
902 A
* * * * * *
2476272 ACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGAAAT-----
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
2476332 -------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
2476390 ATC-GAACCAAATCGAGGGTTGCTGTAGCAAGATTGGTAGCACGTAGAGGGGGACCCGATCGATC
131 ATCAG-ACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * *
2476454 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGTCCGCACGATCGTTTCATGGGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
2476519 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCG
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * * * * *
2476584 GACCAAGGGTTACGGTAGCACATTCTGGGCTCGGGCATTTGTTGGTGCTGCATTTTTCTTTGCCA
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
2476649 GGGCACCA--TC---GCA-----GGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGG
390 GGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGAG
* * * *
2476704 GGTCGGAGGGGGTGTGCACACATGATGTGCGATGGGTG-TGGGTACTTGGCCCTTATACTAGCCC
454 GGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCC
2476768 CCTATCCCTCAT-AAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
517 CCTATCCCTCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
2476832 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATATTG
581 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
2476897 TACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCGTGCAAACAAAAATACAAGGATCATGTCTAC
646 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
2476962 CAAGTTTGGGACCAAAACCCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAA-TTTCAA
711 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAA
* *
2477026 AAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
776 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
2477091 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * * *
2477153 AACCACATACCACCCTATCGATCAACGGCTTGTGTATCCCGTCTCTCTGGCCGACGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * ** * *
2477218 CCCGCCCACCGGCCTTCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAC
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
2477283 ATCAGACCAGATCAAGGGTTGCGGCAGCAAGATCGACAGCCCACAGAGGGGGACCC-AGCCGATC
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATC
* * ** * * * * ** *
2477347 CCCGGCTTGCGCTTCCTGCCCCTCTGGCCGATTGAGTGACCACACGCTCATTTTTTGAGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
2477412 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCT
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * *
2477477 GACCGAGGGTTGCGGCAGCACAAGATGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
2477542 GGGCACCATCTCCGTAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCGGGCGATCGGAG
390 GGGCACCATCT-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAG
* * * *
2477607 GGTCGGGGGGGTGTGCACATATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
454 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2477672 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTAAGATTTTACAGGTTTGC
519 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2477737 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTCC
584 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
2477802 ACTTTGAGTTTTTAGCTGATTTTTTTTGTGCAGGCCAACAAAAATACAAGGATCATGTCTACCAA
649 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
2477867 GTTTGGGGCCAAAA-TGCCTTGT-GAAAAAATTTTAAAACATCCTGAATCGC-AAAATGTTTCAG
714 GTTTGGGGCCAAAACT-CCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAA-GTTTCAA
* * *
2477929 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGACGGGTTAAGGGACCA
776 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
2477994 GTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-AGAATATGAAGATGTGCCTAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-AATATGAAGATGTGCCTAA
* * ** * *
2478056 ACCCACCAACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCATGCATAAT----G
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * **
2478117 CCCACCCGCCCGTCCGCACATTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * ** *
2478182 ATTAGACTGGACCGAGGGTTGCTGCAGTAGGATCGGGGGCACGCGGAGGGGGACCCGATCGATCC
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* ** * * * * *
2478247 CC-GTTTATGCATCCCGCCCCTCTGGCTGGTTGAACGCCCACACGCTTGTTTCGTGGGTTGACTT
196 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
2478311 AGGCATAAGGAGTTCATTCCCAG--T----ATA---AG---A-T--C-G-----GATCGGACC--
261 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * *
2478353 A---AGGGTTGCGGCACCAAAT-CTTAGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
326 ACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
2478414 GGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGG
390 GGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGA
** *
2478479 GGGCCGGGGGGGTGTGCGCACACAATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
453 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * *
2478544 TTATCCCTCATCAAGCCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAAGTTTG
518 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
2478609 CTGCCAGTAGCCATTAAAATGTCTAAAATGAGGACACTTTTTTTAAATGGTCACAAAATCTTGTA
583 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
2478674 CACTTCGAGTTTTTAGCTGAATTTCTTTATGCATGACAA-AAAAATACAAGCATCATGTCTACCA
648 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* ** * * *
2478738 AGTTTGGGGCCAAAACTTC-TTCTG-AAAAATTTTAAAAAATCTTGAATCGCAAAAAGTTTCCAA
713 AGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAAA
* * * *
2478801 AATCATGAATAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCAT
777 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** * *
2478866 TGTATGGATTTACAAAACATAAAAATGGCATTGGCATGCAAAAATATGAGGATGTGCCTAA
842 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
2478927 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
2478992 CCCGCACGCCCGCCCGCTCGTTTCGTTGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * * * *
2479057 ATCAGACCAGACCGAGGGTTACGATAGTAGGATTGGTAGCACGTAGAGGGGGACTCGACCGATCC
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* ** * * *
2479122 CCAGCTTGCGGTTCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTT
196 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* ** * *
2479187 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTGGTCTAAGATCTGATCGG
261 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* ** *
2479252 ACCCAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
326 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * *
2479317 GGCACTATCGTCGGAGCATTGTCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCAGG-G
391 GGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGAG
** *
2479381 GGCC-GGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACC
454 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
2479445 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
519 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2479510 TGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
584 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
2479575 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAACGATCACATCTTCCAA
649 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
2479640 GTTTGGGGCCAAAA-TGCCTTTCCAAAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
714 GTTTGGGGCCAAAACT-CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAAAA
* * * *
2479704 AACGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATT
778 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
2479769 GTATGAATTTACAAGCCAAAAAAATGGCATTGG-AT-CACTGTAATATGAAGATCTTCCTAA
843 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA--GAAATATGAAGATGTGCCTAA
* * *
2479829 ACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
2479894 CCTGCCTGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * * *
2479959 ATCAAACTGGA-CTGAGGGTTGAGGCAGTACGATCGGCAGCATGTAGAGGGGGACCCGATCGATC
131 ATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * ** * *
2480023 CCCAGTTTGCGCATCATGCCCCTCTGGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
2480088 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC-GATATAAGATCAGACC
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACC
* * ** **
2480152 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACC
324 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * * *
2480217 GAGGTACCA--T-----CA---TCGAAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGG
389 GGGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGA
* * *
2480272 GGGCC-GAGAGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
453 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
2480336 CTATCTCTCATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTG
518 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2480401 CTGCCAGTAGCCACTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
583 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
2480466 CACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACATCTGCCA
648 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * *
2480531 AGTTTGGGGCCAAAAC-GCTATCCAAAAAAATTGTT-AAAAATCTCAAACC-ATAAAAAGTTTCG
713 AGTTTGGGGCCAAAACTCCT-TTCGAAAAAATT-TTAAAAAATCCCGAACCGCT-AAAAGTTTCA
* * *
2480593 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACC
775 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
2480658 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
840 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
2480721 ACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTAGCCGGCGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * *
2480786 TCCGCCCGCGCGCTCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAA
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAA
* ** * * * *
2480850 GATCAAACTGGA-CTGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGA-CCAATCGAT
130 GATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
* * *
2480913 CCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGAC
194 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
2480977 TTAGTCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGAACT
259 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** ** * * * * *
2481042 TGACCGAGGGTTGCGATAGCACAAACTGGGCTGGGGCGTGTGATGGTACCACATTTTTCTTCGTC
324 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* ** *
2481107 GGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCCGG
389 GGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGG
* * * * *
2481172 GGGGCC-GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGTTACATAGCCCTTATATTGGCCC
452 AGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** *
2481236 CCTATCCCTCATCAAACCTCGAGAACTCACACGTCCTTAAAGAGCATTTGAAATTTTACAGGTTT
517 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
2481301 GCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
582 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
2481366 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACC
647 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** * *
2481431 AAGTTTGGGGCCAAAACTTC-TTCTGAAAAAATTTTCAAAAATTCTAAACCGCAAAAAGTTTCCA
712 AAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAA
* * *
2481495 AAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCA
776 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
2481560 ATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
2481622 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTATGGCTGGCGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * * *
2481687 CTCGCCCGCCTGCCTGCTCGTTCGTTTCATCAGTTGGCTTATGCATACGGAGTTCA-TCCCATTC
66 CCCGCCCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
2481751 TAAGATCAGACCGGATCGAGGGTTGCGACTGCTGGATGGGCAGCACGCAGAGGGGTACCCGATCG
127 TAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
* * * * * *
2481816 ATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCATTTCGTGGGTTG
192 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
2481881 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
257 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
2481946 TCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTAATTTTCTTCG
322 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
2482011 TCGGGGCACCAACGTCGGAGCATCGTTGGAGAACTTGACCGACAGCATTGGGGTTCCGACGATC-
387 TCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
2482075 GAGGGGGCTGGGGGGTGTGCGCACATGATGTCCGGTGGGTGCTGGTACTTGGCCCTTATATTGGC
451 GA-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
2482140 CCCCTATCCCTCATCAAAACTCGAGAACTCACACCCTCTTAAAGAGAGCATTTGAGATTTTACAA
515 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA-AGAGCATTTGAGATTTTACAG
* *
2482205 GTTTGCTGCCAGTAGCGATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
578 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
2482270 TTGTACACTTCGAGTTTTTAGCTGAATTTTTGTATGCATGCCAAAAAAAATACAAGGATCACGTC
643 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
2482335 TACCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTT
708 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTT
*
2482399 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
773 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
2482464 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
838 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * *
2482529 ACCCACCTACCA-CCTGATCTATCCACGGCTTGCGCATCTCGTCTCTCTGGCTGGCATAGTGCTC
1 ACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * * * *
2482593 GCCCGCCTGCCCGCCCACTCATTTTGTCAGTT-GCTTAGGCATACAGAGTTCATTCCCAATCTAA
65 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2482657 GATCAAACCAGAAT-GAGGGTTGCGGTAGCAGCATCGGCAGCACGCAGAGGGGAACCCCACCGAT
130 GATCAGACCAG-ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
** * * * * * * * *
2482721 CTTCGGATTGTGCTTCCCGCCCCTCTGGTCGACTGAGCGCCCACATGCTCGTTTTGTGGGTTGAC
194 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
2482786 -T-----TA--G-G--------CA---T--G--T--GGAGTTCATTCCCAGTCTAAGATCGGACT
259 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* *** * *
2482825 AGACCGAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTC
324 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* ** *
2482890 GGGGCACCAT-TACCGGAGCATCGTCGGAGAACCTGAACGGTGGCATTGGGGTTCCGACGATCAG
389 GGGGCACCATCT--CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * *
2482954 AGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGGC
452 A-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
2483019 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTT
516 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
2483084 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
581 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
2483149 TACACTTTGAGTTTTTAGCTG-ATTTTTTTATCCATGCCAAAAAAAATAAAAGGATCACGTCTAC
646 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
2483213 CAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCCCCAACTGCAAAAAGTTTCAA
711 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAA
2483278 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
776 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
2483343 TTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATAAAGATGTGCCTAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * **
2483405 ACCCACCTACCACCCGATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCTTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
2483470 CCCGCCCGCCCGCCCGTTCATTTCGTCGGTT-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * * *
2483534 TTCAAACCAGACCGAGGGTTATGGCAGCAGCATCAGCAGCATGCAGAGGGGGACCCGATAGATCT
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * * *
2483599 CCGACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCAGCCCGTACGCTTGTTTCGTGGGTTGAC-
196 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACT
*
2483663 T-----TA--G-G--------CA---T----AT--GGAGTTCATTCCCAGTCTAAGATCGGACCA
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * *
2483703 GACCGAGGGTTGCGACAGCACATGCTGGGCTCTGGCATGTGCTCGTGCCGCATTTTTCTTCATCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
2483768 GGGCACCATTGTCGAAGCAT-ATCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGATCGGAG
390 GGGCACCA-TCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAG
* * *
2483832 GGCCGGGGCGGTGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCC
454 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
2483896 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
519 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2483960 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTAC
584 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
2484025 GCTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAAATACAAGGATCACGCCTACCAA
649 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* ** * ** * * **
2484090 GCTTGCAGCCAAAACTCC-TTCTGAAAAAATTTAAAAAAATGTCGAATC-ATAAAAAGTTTTGAA
714 GTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTCAAA
* ***
2484153 AATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTGTGTGAAGGCTTAAGGGACCAT
777 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
2484218 TGTATGAATTTACAATCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
842 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * * *
2484279 ACCAACCTACCACCCCATCGATCCACGGCTTGCG-ATCCCGGCTCTCTGGTCGGCATAGTGCCTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* *
2484343 CCTGCCCGCCCGCCCGCTCGTTT-GTTCGGTTGGCTT----AT--GGAGTTTATTCCCAGTCTAA
66 CCCGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * *
2484401 GATCGGACCAGACCAAGGGTTGCCGTAGCAGGATCAGCAACACACAGAGGGGGACTCGGTCGATC
130 GATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* ** * ** * **
2484466 CCCGGCTTACATATTCTACCCCACTGGCCGGCTGAGCGCCCAAACGCTCGTTTCGTGGGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
2484531 TAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--A----A-----A--C------CGGACC-
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * ** *
2484574 -A---AAGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTT-TACGTCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
2484634 GGGCACCAT-TGCTGAAGCATCGTCGGAGAACCTGACCGACAGCTTTGGGGTTCCGACGATCGAA
390 GGGCACCATCT-C-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-G
* * *
2484698 AGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCC
452 AGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
2484762 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
517 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
2484827 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
582 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
2484892 ACACTTCGAG-TTTTAGCTGATTTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
647 ACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * * *
2484956 CAAGTTTGCAGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAATGCCGAATC-ATAAAAAGTTT
711 CAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTT-AAAAAATCCCGAACCGCT-AAAAGTTT
** *
2485019 -TGAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGA
773 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
2485083 CCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCACT-TAGAAATATGAAGATGTGCCTA
838 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTA
2485147 A
902 A
* * * ** * **
2485148 ACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGTAGGCATAGTGCTTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * ** * *
2485213 CCAGCCCGCCCGCCCGTTCAATTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
2485278 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATCC
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * * * * * * *
2485343 TCGACTTGCGCATTCTGCCCTTCTGGCCGGCTGAGTGCCCACACGCTCGTTTTGTGAGTTGACTT
196 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
2485408 AGGCATACGGAGTTCATTCCCAGTCTTAGCATACAGAGTTCATTCCTAGTCTAACATTC-GACCG
261 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCG
* * *
2485472 GACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATCTGTTGGTGCCGCATTTTTCTTCGTCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * *
2485537 GGGCACCATCGTCGGAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGG
390 GGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GA
* * * * *
2485602 GGGCC-GAGCGATGTGTGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
453 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
2485666 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
518 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2485731 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGTTACAAAATCTTGTA
583 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
2485796 CACTTCGAGTTTTTAGCTGAATTTCTTTTGTGCATGTCAACAAAAATACAAGGATTACGTCTACC
648 CACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
*
2485861 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATGCCGAACCG-TAAAAAGTTTCAA
712 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTCAA
* *
2485925 AAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
776 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* ** * *
2485990 TTCTATGAATTTGGAAGCCATAAAAATGGCATTGGCGTGTAGAAATATGAAGATGTGCCTAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
2486052 ACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT-----
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
2486112 ---GCCCGCCCGCCCGCTCG-TT--TC-GTTGG-TT--G--T---G-G--------CAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * ** * * * *
2486153 ATTGGACC-GAACTGAGGGTTATGGCAGTAGGATCGGTAGCACGAAGAGGGGGACCCGATCGATA
131 ATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * * * *
2486217 CCCGGCTTGCGCATCGCACCCCT-TAGG-C--AT-A----CTG-A-GTTC-ATTCCT-AG-T--C
195 CCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * **
2486266 -TATGCATACGAAGTGT-ATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTT-GTGGTAGCA-T
259 TTAGGCATACGGAGT-TCATTCCCAGTCTAAGCAT---A-C-G---GA--GTTCAT--TCCCAGT
* ** ** * * *
2486326 GT-AGAGGGGGACCCGATCGATCCCCGGCTTGC-GCATCCCACCCCT-CTGGCCGGCT-GGCGCA
311 CTAAGA-TCGGA-CCG---GA-CCGAGGGTTGCGGCA--GCA--CATGCT-G--GGCTCGG-G--
* * * * * * *
2486387 TCCCACCCCTCTGGCCGGCTGAGAGCTCGTATGCTTAT-TTCAT-GGGTTG-ACTTAGGCATACG
360 ---CA------T-G--TGCTG-GTGC-CGCAT--TTTTCTTCGTCGGG--GCAC-CA-TC-T-CG
* * ** * * ** ** * *
2486449 GAG-TTCATTCCCAG--TCTAAGCATACGG-AGTT--CATTCCCAATCTAAGATCGGATTGGACC
403 GAGCATC-GTCGGAGAACCTGA-CCGACGGCA-TTGGGGTT-CCGA-C---GATCGGA--GGGCC
* * * ** * * **** *
2486508 --GAGGGT-TGCG-ACA-GCA--CGCAGA-GGGGGACCCG-A-TCGATCCC-CGGCTTGCGCAAC
458 GGGGGGGTGTGCGCACATG-ATGTGC-GATGGGTG-CTGGTACTTG-GCCCTTATATTG-GC-CC
** * ** * ** * * * * * ***
2486562 CC-A-CCC-C-TCTGACCGGCTGAGCGCCCACACCCTTGTTTCATGGGTTGACTT-AG-GCATAC
517 CCTATCCCTCATCAAACC-TC-GAGAACTCACACCC--CCTTAAAGAG--CATTTGAGATTTTAC
* *** * * ** * * *** *
2486621 GAAGTTCATTCCCAGGCTAAG-CA-TACGCAGT-TCATTCCCAATCTGAGATCGGAC--TGGACT
576 -AGGTTTGCTGCCA-G-T-AGCCATTA--AAGTGTC--T-GAAAT-GGGGA-C--ACTTTTTTCA
* * ** * *** * **
2486681 GAGGGTTACGACAGCA-CATGCTGGGCTT-GGGCATTT-GCTGGTACCACATTTTTCTTCGTCGG
628 AATGG-T-C-ACAAAATCTTG-TACACTTCGAGTTTTTAGCT-G----A-ATTTTT-TT-GT---
* * ** * * * **
2486743 GGCACCATCACCTGAGCATCGATAGAGAAATTGACCAGCGGTAT-TGGTATTTTGACGATCG-GG
678 -G---CAT-GCC--A--A-C---A-A-AAA-T-A-CA-AGG-ATCACG---TCT-ACCA-AGTTT
******* * * ** * * **** ** * * * *
2486806 GGGGCCAGGGGGGGTGTGCGCACATCATGTGTGATGGGTGCTGGTACTTGGCCCTTATA-TTGGC
718 GGGGCCAAAACTCCT-TTCG-AAAAAAT-TTTAAAAAAT-CCCGAAC----CGCTAAAAGTT---
* * * * * ** * * * ** ** * ** *
2486870 CCCATATCATTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
772 -TCA-A-AAATCGTGAAAAATAGAAAAC-GA-GTCGTCTT---G-CCA--TGA-AACTT-CACG-
* * * * ** * *
2486935 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATG-GGGACACTTTTTTCAAATGGTCA-AAAAAT-
823 -TG--A--AG--G-C-TT-AAGGGAC--CATTGTATGA-A---TTTAC-AA--GCCATAAAAATG
* * *** * * *
2486997 -C-TTGTACACTTCGAGTTTTTAGTTGAATTGTCTTGTGCATGCCA
869 GCATTG-GCA-TGC-AG-AAATA--TGAA--G--ATGTGCCT--AA
** ** * *** * * *
2487041 ACAAAAATACAAGGATCA-CG-TCAACGAAGTTTGCGGGCAAAACTCCTTCCGAAAAAAT-TTTA
1 ACCCACCTACCACCCT-ATCGATCCACG--GCTTGC--GC---A-T-C--CCG------TCTCT-
* ** ** ****** ** ******* ** ** *
2487103 AAAAATGTCGAACC-GCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTC--TTGCC
47 ----CTG--G--CCGGC--GTAGTGCCCGCCCGCCCGCCCGCCCG--CTCGTTTCGTCGGTTGGC
* * * * *** * ** * *** *
2487165 ATGAAACGTCGCATGAAGG-CTTAAGGGACCATTGTATGAATTTACA-ATCCATAAAAATGGCAT
100 -T--TA-G--GCAT-ACGGAGTTCA-TTCCCA--GTCT-AAGAT-CAGA-CCAGATCGA-GG-GT
* * *** ***** * *
2487228 TG-GCACATAGAAATATGAAGAT-GTGCTTAAC-CA-ACCTACCACCCTATCGATCCACGGCTTG
150 TGCG-GC--AG---CA-G--GATCG-GCAGCACGCAGA-GGGGGACCCGATCGATCCCCGGCTTG
* * * * * * *
2487289 CACAT-CCGTCTCTCTGGCCGCGTAGTGCCTGCCCCACCGCTCGCCCCCGCTCGTTTCGTCGG-T
204 CGCATCCCGCCCCTCTGG-C-C---G-G-CTG----AGCGC-C-CGCACGCTCGTTTCGTGGGTT
* * * *** *
2487352 GGCTTAGGCATACGGA-TTCATTCCCAGTCTAAGATCAGAC-CAAACCAAAAGGATGCGGCAAGC
256 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATACGGAGTTC------ATTC--C---C
* * * * * * ** *
2487415 AGGATCGACAGCACTCAGA-GGGACCCGATCGATCCT-CGGCTTTACGCAC--CCTGCCCTCTGG
308 A-G-TCTA-AG-A-TCGGACCGGA-CCGA-GGGT--TGCGGC---A-GCACATGCTGGGCTCGGG
* ** * *
2487476 C-TG-GCTGAGCGGCCCGCACACTCGTT-TT-GT-GGGTTGACTTAGGCAT-ACGGAGTTCATTC
360 CATGTGCTG-G-TG-CCG--CA-TTTTTCTTCGTCGGG--G-C--A-CCATCTCGGAG--CA-T-
* * * * * * * *
2487535 CCAGTCTAAGATCACACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGC-AT-GTGCTG
409 -C-GTC--GGA-GA-ACCTGACC----G--AC-G--GCA-TTG--GGGTTCCGACGATCG-G-AG
* ****** * * * * * *
2487598 GTGTCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACTGGAGAACCTGACCGGTGGCA
454 G-GCCG---GGGGGGT-GT--GCGCA-CAT-GAT-GTGC--GA-TGG-G----TG-CTGGT-AC-
** ** * * *
2487663 TTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAACCTCAAGATCTTACAC
498 TT-GGCCCTTATA-TTGG-CC----------CCC-TATCCCTCATCAAACCTCGAGAACTCACAC
*
2487728 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AATG
549 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATG
*
2487792 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGT-GAGTTTTTAGTTGAATTTTTTTG
613 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * *
2487856 TTCATACCAACAAAAATACAATGAGCACGTCTACCTAGTTTGGGGCTAAAACTCCTTCCGAAAGA
677 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
2487921 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTC
742 ATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2487986 GCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
807 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
2488051 TTGGCGTGCAGAAATATGAAGATGTGCCTAA
872 TTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
2488082 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTTTCTGGCCGGCATAGT----G
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
2488143 CCCGCCCGCCCGTCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * **
2488208 ATCAGACC-GAACCGAGGGGTACGGCAACAGGATCGACAGCATGCAGAGGGGGACCAGGCCGATC
131 ATCAGACCAG-ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * *
2488272 CTCGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAGCGCCCGCACGCTTGTTTGGTGGGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
2488337 TAGGGATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCG
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * **
2488402 GACCAACGGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTT--T--
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
2488463 --G------C-CGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGG
390 GGGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGG
* * * *
2488519 GTC-GGGGGGTGTGCGCACTTGATGTGAGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
455 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2488583 ATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
520 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2488648 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
585 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
2488713 CTTCGAG-TTTTAGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAA
650 CTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
2488777 GTTTGGGGCCAAAAC-CC-TTCAAAAAAAATTTAAAAAAATCCCGAACCG-TAAAAAGTTTCAAA
714 GTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTCAAA
* *
2488839 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTCAA-GGACCA
777 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCA
* *
2488903 TTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAA
841 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
2488965 ACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT----G
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* ** *
2489026 CCCGCACGCCTACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
2489091 ATCAGACCAG-GCTGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
131 ATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
** * * * * * * * *
2489155 CCCTACTTACGCGTCTCGCCCCTCCGGCCGGTTGAGCGCCCGCACGCTCTTTTCATGGGCTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
2489220 TAGGGATACGGAGTTCATT-CC---C--AG--T-----G-T-A-----AG-C-----TCGGACCG
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* *
2489259 GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * * * * * * * * * *
2489324 AAGCATC-GCT-GGAGAACCTGACTGGCTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
390 GGGCACCATCTCGGAGCATC-GTC-GG-AGAACCT-GAC---CG-A---CG-GCAT-T-G--G--
** * * * *
2489387 TAAGGGCCCGCACGCTCGTTTCATGGGTCAGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTG
437 ---GGTTCCG-ACGATCG---GA-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** * * *
2489451 GTACTTGGCTCTTATAACGGCCTCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
494 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
2489516 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
559 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
2489581 CTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
624 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
2489646 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAAATTTTAAAAAA
689 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAA
*
2489711 TCTCGAACCG-TAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
753 TCCCGAACCGCTAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * **
2489775 TTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACACA
817 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
2489840 AAAATATGAAGATGTGCCTAA
882 GAAATATGAAGATGTGCCTAA
*
2489861 ACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC-TC-CTCT--CCGGTCG--GTAG--
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-CGTAGT-GCC
* * * * * *
2489918 AG--TGCCCACCCGTCCGCTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTA
64 CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * **
2489981 AGAT-TGAATCAGA-CTGAGGGTTGTGCCAGCAGGATCGGTAGCACTCAGAGGGGGACCCGGCCG
129 AGATCAG-ACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
** * * * * * * *
2490044 ATCCTTGGGTTGCGCAT-CCACCCCTCTGGCAGGCTGAGTGCCCGCACTCTCATTTCATGGGTTG
192 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
2490108 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATTGGA
257 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* ** ** * * *
2490173 TCGGACCGAGGGTTGCAACAGCACATGCTGGGCTTAGGCATGTACTGGTGCAGCATTTATCTTCG
322 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * ** * * **
2490238 TTGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTTACCGGCAGCATTACGATTTCGATAATCG
387 TCGGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-
* * * *
2490303 GGGGGGCCGGGGGGGTGTTCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGC
450 GGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
2490368 CCCCTATCCCTCATCAGACCTTGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGT
515 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
2490432 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTT
580 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
2490497 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACAAGGATCACATCTA
645 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
2490562 CCAAGTTTGGGGCCAAAACTCCTTTC-AAAAACATTTTAAAAAATCCCGAACCGCAAAAAGTTTT
710 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-ATTTTAAAAAATCCCGAACCGCTAAAAGTTTC
* *
2490626 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGA
774 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGA
** * * *
2490691 CCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCC-AA
838 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* ** * * *
2490755 AACCACCTACCACCCTATCGATCCACAACTTGCGAATCCCGTCTCTCTGGGCGGCATAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * *
2490820 CCCGCCCGTCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * * * * *
2490885 ATTGGACCGGACCAAGGGTTGTGGCAGTAGGATCGACAGCACGTAGAAGGTGACCCGA-CTGATC
131 ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATC
* * * * * *
2490949 CCCAGCTTTCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTTCGTGAGTTGACT
195 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * **
2491014 TAGGCATACGGAGTTAATTCCCAGTCGAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATTG
260 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
*
2491079 GACCGAGGGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
325 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * ** *
2491144 GGGCACCATCATCGGAGCATCGTTAGAGAACCTGATCGGTGGCATTGGGGTT-CTAGCGATCCGG
390 GGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGAT-CGG
* * *
2491208 GGGGCC-GAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
452 AGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
2491272 CCTTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT
517 CC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
2491336 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAGTGGTCACAAAATCTTG
581 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
2491401 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
646 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
** * * * *
2491466 CAAGTTCAGGGCCAAAAATCATGTCAAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCA
711 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTCA
* *
2491530 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACC
775 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
2491595 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATGAAAATGTGCCTAA
840 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAA
* * * * *
2491658 ACTCACCTACCACCCTATCGATGCACGACTTGCGCATCCCGTCTCTCTGGCCGACCTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * ** * ** * *
2491723 CTCGCCCGCCCACTTGCTCGTTTCATCAATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTCAG
66 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * *
2491788 ATCAGACC-GAACAGACGGTTGCGATAGCAGGATCGACAGCATGCAGAGGGGCACCC-AGCCGAT
131 ATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGAT
* * * * * * *
2491851 CCCCGGCTTGCGCATCCCACCCCTTTGGTCGGCTGAGTGCCCACACGCTTGTTTCGTGGGTAGAC
194 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* ** *
2491916 TTAGGCATACGGAGTTCATTCCCAGTCCAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGGCC
259 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ** ** *
2491981 AGACCGAGGGTTGCAGCAGCACATGCTGGGCACGGGCATGTGCTACTGCCATATTTTTCTTCATC
324 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * * * ** *
2492046 GGGGCATCATCGCCGAAGCATCGCCGGAGAACCTAATCGATGGCATTGGGGTTCCGGTGATCGAA
389 GGGGCACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGA
* *
2492111 GGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
453 -GGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
2492176 CCCTATCCCTCAT
516 CCCTATCCCTCAT
2492189 GAGAAATAGA
Statistics
Matches: 13078, Mismatches: 2032, Indels: 1613
0.78 0.12 0.10
Matches are distributed among these distances:
857 61 0.00
858 2 0.00
859 26 0.00
860 2 0.00
861 1 0.00
862 3 0.00
863 5 0.00
864 4 0.00
865 5 0.00
866 23 0.00
867 116 0.01
868 203 0.02
869 341 0.03
870 89 0.01
871 201 0.02
872 165 0.01
873 389 0.03
874 322 0.02
875 260 0.02
876 744 0.06
877 289 0.02
878 105 0.01
879 5 0.00
880 4 0.00
881 110 0.01
882 119 0.01
883 678 0.05
884 194 0.01
885 7 0.00
886 6 0.00
887 2 0.00
888 1 0.00
889 14 0.00
890 145 0.01
891 144 0.01
892 966 0.07
893 304 0.02
894 361 0.03
895 326 0.02
896 308 0.02
897 50 0.00
898 102 0.01
899 127 0.01
900 234 0.02
901 562 0.04
902 1181 0.09
903 1450 0.11
904 375 0.03
905 173 0.01
906 282 0.02
907 237 0.02
908 167 0.01
909 3 0.00
910 2 0.00
911 7 0.00
912 11 0.00
913 4 0.00
914 2 0.00
915 1 0.00
916 1 0.00
917 72 0.01
918 2 0.00
919 6 0.00
920 19 0.00
921 4 0.00
922 3 0.00
923 4 0.00
925 2 0.00
926 3 0.00
928 1 0.00
929 1 0.00
930 1 0.00
931 3 0.00
932 7 0.00
933 2 0.00
934 4 0.00
935 3 0.00
936 5 0.00
937 1 0.00
938 2 0.00
939 12 0.00
940 6 0.00
941 4 0.00
942 9 0.00
943 3 0.00
946 2 0.00
947 3 0.00
948 1 0.00
950 2 0.00
951 1 0.00
952 15 0.00
953 1 0.00
954 3 0.00
957 5 0.00
958 6 0.00
959 4 0.00
960 7 0.00
961 12 0.00
962 7 0.00
963 7 0.00
964 5 0.00
965 6 0.00
966 5 0.00
967 2 0.00
968 5 0.00
969 1 0.00
970 3 0.00
971 1 0.00
972 2 0.00
973 6 0.00
974 2 0.00
975 6 0.00
977 3 0.00
978 5 0.00
979 3 0.00
980 25 0.00
981 23 0.00
982 21 0.00
983 4 0.00
985 1 0.00
986 3 0.00
987 6 0.00
988 6 0.00
989 10 0.00
990 6 0.00
991 6 0.00
992 26 0.00
993 11 0.00
994 1 0.00
995 1 0.00
996 1 0.00
997 2 0.00
999 5 0.00
1000 3 0.00
1001 6 0.00
1002 4 0.00
1003 3 0.00
1004 2 0.00
1005 7 0.00
1006 7 0.00
1008 1 0.00
1009 2 0.00
1010 6 0.00
1011 2 0.00
1012 9 0.00
1013 2 0.00
1014 4 0.00
1016 4 0.00
1017 2 0.00
1018 2 0.00
1019 1 0.00
1021 2 0.00
1022 3 0.00
1024 171 0.01
1025 201 0.02
1026 154 0.01
1027 122 0.01
1028 117 0.01
1029 91 0.01
1030 193 0.01
1031 154 0.01
1032 166 0.01
1033 109 0.01
1034 115 0.01
1035 105 0.01
1036 124 0.01
1037 100 0.01
1038 134 0.01
1039 138 0.01
1040 589 0.05
1041 183 0.01
1042 111 0.01
1043 87 0.01
1044 65 0.00
1045 71 0.01
1046 77 0.01
1047 90 0.01
1048 625 0.05
1049 267 0.02
1050 55 0.00
1051 72 0.01
1052 90 0.01
1053 164 0.01
1054 159 0.01
1055 103 0.01
1056 114 0.01
1057 53 0.00
1058 118 0.01
1059 38 0.00
1060 62 0.00
1061 113 0.01
1062 231 0.02
1063 96 0.01
1064 48 0.00
1065 44 0.00
1066 39 0.00
1067 57 0.00
1068 57 0.00
1069 90 0.01
1070 40 0.00
1071 19 0.00
1072 36 0.00
1073 29 0.00
1074 22 0.00
1075 60 0.00
1076 94 0.01
1077 60 0.00
1078 55 0.00
1079 103 0.01
1080 46 0.00
1081 38 0.00
1082 15 0.00
1083 31 0.00
1084 22 0.00
1085 99 0.01
1086 25 0.00
1087 27 0.00
1088 16 0.00
1089 32 0.00
1090 31 0.00
1091 98 0.01
1092 28 0.00
1093 9 0.00
1094 12 0.00
1095 17 0.00
1096 6 0.00
1097 10 0.00
1098 4 0.00
1099 13 0.00
1100 7 0.00
1101 20 0.00
1102 14 0.00
1103 12 0.00
1104 11 0.00
1105 9 0.00
1106 5 0.00
1107 2 0.00
1108 2 0.00
1109 6 0.00
1110 6 0.00
1111 1 0.00
1112 1 0.00
1113 6 0.00
1114 3 0.00
1115 3 0.00
1116 3 0.00
1117 4 0.00
1118 9 0.00
1119 8 0.00
1120 1 0.00
1122 2 0.00
1123 10 0.00
1124 17 0.00
1125 3 0.00
1126 6 0.00
1127 3 0.00
1128 3 0.00
1130 7 0.00
1131 5 0.00
1132 6 0.00
1133 13 0.00
1134 8 0.00
1135 1 0.00
1136 12 0.00
1137 2 0.00
1138 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGG
CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
Found at i:2479218 original size:26 final size:26
Alignment explanation
Indices: 2479189--2479241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2479179 GTTGACTTAG
*
2479189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
2479215 GCATACAGAGTTCATTCCTGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2479241 G
1 G
2479242 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2480143 original size:26 final size:26
Alignment explanation
Indices: 2480091--2480143 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2480081 GTTGACTTAG
* *
2480091 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCGAGTATAA
2480117 GCATACGGAGTTCATTCCCGA-TATAA
1 GCATACGGAGTTCATT-CCGAGTATAA
2480143 G
1 G
2480144 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTATAA
Found at i:2480674 original size:892 final size:886
Alignment explanation
Indices: 2475369--2486125 Score: 12454
Period size: 902 Copynumber: 12.1 Consensus size: 886
2475359 GGGTGTCTAC
* * * * *
2475369 ACCCACCTACCA-CCTATCGATCCA-AGCTTGCGCATCCCGTCTCTTTGGCTAGGCGTAGTGCCT
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGGCATAGTGCCC
* * * * * * *
2475432 G-CCGCCCGCCCGCCTTGCTCGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGCCGA
65 GCCCGCCCGCCCGCC-CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
2475496 AGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-AGCCGA
129 AGATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGA
* * ** * *
2475560 TCCCCGACTTGCGCATCCCGCCCTTTTGGTTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGA
193 TCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
2475625 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATTCCCAGTCTAAGATCGGAC
257 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CCA-TCTAAGATC-GAC
* * * ** * * *
2475690 CGAATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCAT
318 CGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
2475755 CGGGGCACCATCGTCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGA
383 CGGGGCACCA---T-----CATCG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* *
2475820 GGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCC
437 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
2475885 CCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTT
502 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
2475950 GCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
567 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
2476015 ACACTTTGAGTTTTTAGCTGAAATTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACC
632 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * *
2476080 AAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGCTTT-AA
697 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAA
* * * *
2476144 AAATCGTGACATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTACGGGCCCA
761 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
2476209 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGTAAAATATATGAAGATGTGCCAAA
826 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC--AGAA-ATATGAAGATGTGCCTAA
* * * * *
2476272 ACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGA-AAT----
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-ATAGTGCCC
*
2476332 --------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
65 GCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
2476389 GATCGAACCA-AATCGAGGGTTGCTGTAGCAAGATTGGTAGCACGTAGAGGGGGACCCGATCGAT
130 GATCAAACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
* * * *
2476453 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGTCCGCACGATCGTTTCATGGGTTGAC
194 CCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
2476518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCGGACC
258 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CCA-TCTAAGATC-GACC
* * * * * * * * *
2476583 GGACCAAGGGTTACGGTAGCACATTCTGGGCTCGGGCATTTGTTGGTGCTGCATTTTTCTTTGCC
319 GGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
2476648 AGGGCACCATC-GCAGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATTGGGGGGGTCGGAG
384 GGGGCACCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCG-G
* * *
2476712 GGGGTGTGCACACATGATGTGCGATGGGTG-TGGGTACTTGGCCCTTATACTAGCCCCCTATCCC
446 GGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCC
2476776 TCAT-AAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
510 TCATCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
2476840 GTAGCCATTAAAGTGTTTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTT
574 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
2476905 GAGTTTTTAGCTGAATTTTTTTTTGCGTG-CAAACAAAAATACAAGGATCATGTCTACCAAGTTT
639 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
2476969 GGGACCAAAACCCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCTAAAA-TTTCAAAAATCGT
703 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
* *
2477033 GAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
768 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
2477098 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
833 AATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * * * * *
2477153 AACCACATACCACCCTATCGATCAACGGCTTGTGTATCCCGTCTCTCTGGCCGACGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * ** * * *
2477218 CCCGCCCACCGGCCTTCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAC
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
2477283 ATCAGACCAGA-TCAAGGGTTGCGGCAGCAAGATCGACAGCCCACAGAGGGGGACCC-AGCCGAT
131 ATCAAACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGAT
* * ** * * * * ** *
2477346 CCCCGGCTTGCGCTTCCTGCCCCTCTGGCCGATTGAGTGACCACACGCTCATTTTTTGAGTTGAC
194 CCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
2477411 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACC
258 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCC-A-TCTAAGATC-GACC
* ** * * *
2477476 TGACCGAGGGTTGCGGCAGCACAAGATGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
319 GGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
2477541 GGGGCACCATCTCCGTAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCGGGCGATCGGA
384 GGGGCACCA------T--CAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * * * *
2477606 GGGTCGGGGGGGTGTGCACATATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCC
438 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
2477671 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTAAGATTTTACAGGTTTG
503 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
2477736 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTC
568 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
2477801 CACTTTGAGTTTTTAGCTGATTTTTTTTGTGCAGGCCAACAAAAATACAAGGATCATGTCTACCA
633 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
** * * * *
2477866 AGTTTGGGGCCAAAA-TGCCTTGTGAAAAAATTTTAAAACATC-CTGAATCGCAAAATGTTTCAG
698 AGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAA
* * *
2477929 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGACGGGTTAAGGGACCA
761 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
2477994 GTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-AGAATATGAAGATGTGCCTAA
826 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGA-AATATGAAGATGTGCCTAA
* * ** *
2478056 ACCCACCAACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCATGCATAAT----G
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * * **
2478117 CCCACCCGCCCGTCCGCACATTTCATCGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * ** *
2478182 ATTAGACTGGACCGAGGGTTGCTGCAGTAGGATCGGGGGCACGCGGAGGGGGACCCGATCGATCC
131 ATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* ** * * * * *
2478247 CCGTTTATGCATCCCGCCCCTCTGGCTGGTTGAACGCCCACACGCTTGTTTCGTGGGTTGACTTA
196 CCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
2478312 GGCATAAGGAGTTCATTCCCAGTATAAG-AT-CG-G--------ATC---G---GACC--A---A
261 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCATCTAAGATCGACCGGACCGA
** * * * * *
2478355 GGGTTGCGGCACCAAAT-CTTAGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCA
326 GGGTTGCGATAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG--
* *
2478419 CCATCACCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCC
388 ----CA-C----CATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
** * *
2478484 GGGGGGGTGTGCGCACACAATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATC
444 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
2478549 CCTCATCAAGCCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
508 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
2478614 AGTAGCCATTAAAATGTCTAAAATGAGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTT
573 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
2478679 CGAGTTTTTAGCTGAATTTCTTTATGCATGAC-AAAAAAATACAAGCATCATGTCTACCAAGTTT
638 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
2478743 GGGGCCAAAACTTCTTCTG-AAAAATTTTAAAAAATCTTGAATCGCAAAAAGTTTCCAAAATCAT
703 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
* * *
2478807 GAATAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATG
768 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** * *
2478872 GATTTACAAAACATAAAAATGGCATTGGCATGCAAAAATATGAGGATGTGCCTAA
833 AATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * *
2478927 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * *
2478992 CCCGCACGCCCGCCCGCTCGTTTCGTTGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * * * *
2479057 ATCAGACCAGACCGAGGGTTACGATAGTAGGATTGGTAGCACGTAGAGGGGGACTCGACCGATCC
131 ATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
** * * *
2479122 CCAGCTTGCGGTTCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTT
196 CC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
2479187 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTGGTCTAAGATCTGATCGG
260 AGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCC--ATCTAAGATC-GACCGG
* *
2479252 ACCCAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
321 ACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * *
2479317 GGCACTATCGTCGGAGCATTGTCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATC-AGGG
386 GG--C-A-C--C--ATCA---TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
** *
2479381 GGCCGGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCT
440 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2479446 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
505 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2479511 GCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
570 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
2479576 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAACGATCACATCTTCCAAG
635 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
*
2479641 TTTGGGGCCAAAA-TGCCTTTCC-AAAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
700 TTTGGGGCCAAAACT-CC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
* * * *
2479704 AACGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATT
763 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
2479769 GTATGAATTTACAAGCCAAAAAAATGGCATTGG-ATCACTGTAATATGAAGATCTTCCTAA
828 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATCA--GAAATATGAAGATGTGCCTAA
* *
2479829 ACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * * *
2479894 CCTGCCTGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
2479959 ATCAAACTGGACTGAGGGTTGAGGCAGTACGATCGGCAGCATGTAGAGGGGGACCCGATCGATCC
131 ATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* ** * *
2480024 CCAGTTTGCGCATCATGCCCCTCTGGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTT
196 CC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
2480089 AGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCGATATAAGATCAGACCGG
260 AGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CC-ATCTAAGATC-GACCGG
* ** * ** ** *
2480154 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACCGA
321 ACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * * * *
2480219 GGTACCATCATCGAAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGAGGT
386 GGCACCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* *
2480284 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCA
451 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
2480349 AACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
516 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
2480414 CTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
581 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
2480479 TAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACATCTGCCAAGTTTGGGGCCAA
646 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * ** * *
2480544 AAC-GCTATCCAAAAAAATTGTT-AAAAATCTCAAACCATAAAAAGTTTCGAAAATCATGAAAAA
711 AACTCCT-TCCGAAAAAATT-TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
2480607 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTA
774 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
2480672 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
839 CAAGCCATAAAAATGGCATTGGCA-TCAGAAATATGAAGATGTGCCTAA
* * * * *
2480721 ACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTAGCCGGCGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * *
2480786 TCCGCCCGCGCGCTCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAA
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAA
** * * * *
2480850 GATCAAACTGGACTGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGA-CCAATCGATC
130 GATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * *
2480914 CCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGACT
195 CCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * **
2480978 TAGTCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGAACTT
259 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CCA-TCTAAGATCG-ACCG
** * * * * *
2481043 GACCGAGGGTTGCGATAGCACAAACTGGGCTGGGGCGTGTGATGGTACCACATTTTTCTTCGTCG
320 GACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
2481108 GGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCCGGG
385 GGGCACCA----T----CAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * *
2481173 GGGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGTTACATAGCCCTTATATTGGCCCCC
439 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** *
2481238 TATCCCTCATCAAACCTCGAGAACTCACACGTCCTTAAAGAGCATTTGAAATTTTACAGGTTTGC
504 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2481303 TACCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
569 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
2481368 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAA
634 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
2481433 GTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTCAAAAAT-TCTAAACCGCAAAAAGTTTCCAAA
699 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAA
* * * *
2481497 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCAAT
763 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
2481562 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAA
828 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * *
2481622 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTATGGCTGGCGTAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * * * * * *
2481687 CTCGCCCGCCTGCCTGCTCGTTCGTTTCATCAGTTGGCTTATGCATACGGAGTTCA-TCCCATTC
66 CCCGCCCG-C--CC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
2481751 TAAGATCAGACCGGA-TCGAGGGTTGCGACTGCTGGATGGGCAGCACGCAGAGGGGTACCCGATC
127 TAAGATCAAACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC
* * * * *
2481815 GATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCATTTCGTGGGTT
191 GATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
2481880 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
255 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CCA-TCTAAGATC-G
* * * * * * *
2481945 ATCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTAATTTTCTTC
316 ACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
2482010 GTCGGGGCACCAACGTCGGAGCATCGTTGGAGAACTTGACCGACAGCATTGGGGTTCCGACGATC
381 GTCGGGGCACC-A--T-----CATC---GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * *
2482075 GAGGGGGCTGGGGGGTGTGCGCACATGATGTCCGGTGGGTGCTGGTACTTGGCCCTTATATTGGC
435 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
2482140 CCCCTATCCCTCATCAAAACTCGAGAACTCACACCCTCTTAAAGAGAGCATTTGAGATTTTACAA
500 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA-AGAGCATTTGAGATTTTACAG
* *
2482205 GTTTGCTGCCAGTAGCGATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
563 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
2482270 TTGTACACTTCGAGTTTTTAGCTGAATTTTTGTATGCATGCCAAAAAAAATACAAGGATCACGTC
628 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* *
2482335 TACCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTT
693 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
*
2482399 CAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
758 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
2482464 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAA
823 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * *
2482529 ACCCACCTACCA-CCTGATCTATCCACGGCTTGCGCATCTCGTCTCTCTGGCTGGCATAGTGCTC
1 ACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC
* * * * * *
2482593 GCCCGCCTGCCCGCCCACTCATTTTGTCAGTT-GCTTAGGCATACAGAGTTCATTCCCAATCTAA
65 GCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2482657 GATCAAACCAGAATGAGGGTTGCGGTAGCAGCATCGGCAGCACGCAGAGGGGAACCCCACCGATC
130 GATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * * * * * *
2482722 TTCGGATTGTGCTTCCCGCCCCTCTGGTCGACTGAGCGCCCACATGCTCGTTTTGTGGGTTGACT
195 -CCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
**
2482787 TAGGCATGTGGAGTTCATTCCCAGTCTAAG-AT-CG-G--------A-C-----T--A---GACC
259 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCATCTAAGATCGACCGGACC
* * *
2482830 GAGGGTTGCAATAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGC
324 GAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** * *
2482895 ACCATTACCGGAGCATCGTCGGAGAACCTGAACGGTGGCATTGGGGTTCCGACGATCAGAGGGGC
389 ACCA-T-------CA---TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
2482960 CGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGGCCCCTAT
443 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
2483025 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGC
507 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2483090 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
572 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
2483155 TTGAGTTTTTAGCTG-ATTTTTTTATCCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTT
637 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
2483219 TGAGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCCCCAACTGCAAAAAGTTTCAAAAATCG
702 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
2483284 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
767 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
2483349 GAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATAAAGATGTGCCTAA
832 GAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * * **
2483405 ACCCACCTACCACCCGATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCTTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* *
2483470 CCCGCCCGCCCGCCCGTTCATTTCGTCGGTT-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * * *
2483534 TTCAAACCAGACCGAGGGTTATGGCAGCAGCATCAGCAGCATGCAGAGGGGGACCCGATAGATCT
131 ATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * *
2483599 CCGACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCAGCCCGTACGCTTGTTTCGTGGGTTGACT
196 CCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACT
*
2483664 TAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-CG-G--------A-C------C-A---GACC
259 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCATCTAAGATCGACCGGACC
* * * *
2483707 GAGGGTTGCGACAGCACATGCTGGGCTCTGGCATGTGCTCGTGCCGCATTTTTCTTCATCGGGGC
324 GAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
2483772 ACCATTGTCGAAGCATATCGGAGAACCTGACCGACGGTATTGGGGTTCCAACGATC-GGAGGGCC
389 ACCA---T-----C--ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
2483836 GGGGCGGTGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATC
444 GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
2483900 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
508 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
2483964 AGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACGCTT
573 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
2484029 CGAGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAAATACAAGGATCACGCCTACCAAGCTT
638 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
** * * * * ** **
2484094 GCAGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATGTCGAATCATAAAAAGTTTTGAAAATCGT
703 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
* ***
2484159 AAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTGTGTGAAGGCTTAAGGGACCATTGTATG
768 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
2484224 AATTTACAATCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
833 AATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* * * * *
2484279 ACCAACCTACCACCCCATCGATCCACGGCTTGCG-ATCCCGGCTCTCTGGTCGGCATAGTGCCTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * *
2484343 CCTGCCCGCCCGCCCGCTCGTTT-GTTCGGTTGGCTT----AT--GGAGTTTATTCCCAGTCTAA
66 CCCGCCCGCCCGCCCGCTCATTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * * * * *
2484401 GATCGGACCAGACCAAGGGTTGCCGTAGCAGGATCAGCAACACACAGAGGGGGACTCGGTCGATC
130 GATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* ** * ** * **
2484466 CCCGGCTTACATATTCTACCCCACTGGCCGGCTGAGCGCCCAAACGCTCGTTTCGTGGGTTGACT
195 CCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
2484531 TAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG--------ATC--A-A---ACCGGACC
259 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCATCTAAGATCGACCGGACC
* * * * ** *
2484574 AAAGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTT-TACGTCGGGGC
324 GAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ***
2484638 ACCATTGCTGAAGCATCGTCGGAGAACCTGACCGACAGCTTTGGGGTTCCGACGATCGAAAGGGC
389 ACCA----T----CA---TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
2484703 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATC
443 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
2484768 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
508 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
2484833 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
573 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
2484898 CGAG-TTTTAGCTGATTTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
638 CGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
** * * ** **
2484962 TGCAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATGC-CGAATCATAAAAAGTTT-TGAAAT
702 TGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAAT
*
2485025 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
765 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
2485090 ATGAATTTACAATCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCTAA
830 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-TCAGAAATATGAAGATGTGCCTAA
* * * ** **
2485148 ACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGTAGGCATAGTGCTTG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
* * * * *
2485213 CCAGCCCGCCCGCCCGTTCAATTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAG
66 CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
2485278 ATCAGACCAGA-TCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCAATCGATC
131 ATCAAACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATC
* * * * * * * *
2485342 CTCGACTTGCGCATTCTGCCCTTCTGGCCGGCTGAGTGCCCACACGCTCGTTTTGTGAGTTGACT
195 CCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
2485407 TAGGCATACGGAGTTCATTCCCAGTCTTAGCATACAGAGTTCATTCCTAGTCTAACATTCGACCG
259 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCC-A-TCTAAGA-TCGACCG
* ** * *
2485472 GACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATCTGTTGGTGCCGCATTTTTCTTCGTCG
320 GACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
2485537 GGGCACCATCGTCGGAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGG
385 GGGCACCA---T-----CAT---CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * * *
2485602 GGGCCGAGCGATGTGTGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
439 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2485667 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
504 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
2485732 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGTTACAAAATCTTGTAC
569 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
2485797 ACTTCGAGTTTTTAGCTGAATTTCTTTTGTGCATGTCAACAAAAATACAAGGATTACGTCTACCA
634 ACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* *
2485862 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATGC-CGAACCGTAAAAAGTTTCAAA
698 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAA
* *
2485926 AATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
762 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** * *
2485991 TCTATGAATTTGGAAGCCATAAAAATGGCATTGGCGTGTAGAAATATGAAGATGTGCCTAA
827 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCCTAA
* *
2486052 ACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCG
1 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
2486117 CCCGCCCGC
66 CCCGCCCGC
2486126 TCGTTTCGTT
Statistics
Matches: 8572, Mismatches: 1036, Indels: 491
0.85 0.10 0.05
Matches are distributed among these distances:
862 3 0.00
863 1 0.00
864 2 0.00
865 1 0.00
866 18 0.00
867 139 0.02
868 189 0.02
869 334 0.04
870 83 0.01
871 197 0.02
872 142 0.02
873 368 0.04
874 322 0.04
875 181 0.02
876 734 0.09
877 252 0.03
878 93 0.01
879 4 0.00
880 4 0.00
881 110 0.01
882 112 0.01
883 279 0.03
884 5 0.00
885 3 0.00
888 1 0.00
889 3 0.00
890 142 0.02
891 80 0.01
892 835 0.10
893 284 0.03
894 9 0.00
895 3 0.00
896 1 0.00
897 7 0.00
898 79 0.01
899 111 0.01
900 217 0.03
901 553 0.06
902 917 0.11
903 623 0.07
904 370 0.04
905 100 0.01
906 277 0.03
907 228 0.03
908 156 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG
CCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAAACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
CCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCATCTAAGATCGACCGGACCGA
GGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATCAGAAATATGAAGATGTGCCTAA
Found at i:2481012 original size:26 final size:26
Alignment explanation
Indices: 2480982--2481031 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2480972 TTGACTTAGT
2480982 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
2481008 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
2481032 GGATCGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:2481923 original size:26 final size:26
Alignment explanation
Indices: 2481887--2481939 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2481877 GTTGACTTAG
2481887 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2481913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2481939 G
1 G
2481940 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2485446 original size:26 final size:27
Alignment explanation
Indices: 2485405--2485459 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
2485395 TGTGAGTTGA
*
2485405 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATTCCCAGT
*
2485432 CTTA-GCATACAGAGTTCATTCCTAGT
1 CTTAGGCATACAGAGTTCATTCCCAGT
2485458 CT
1 CT
2485460 AACATTCGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATTCCCAGT
Found at i:2486378 original size:26 final size:26
Alignment explanation
Indices: 2486349--2486407 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
2486339 CGATCGATCC
*
2486349 CCGGCTTGCGCATCCCACCCCTCTGG
1 CCGGCTGGCGCATCCCACCCCTCTGG
2486375 CCGGCTGGCGCATCCCACCCCTCTGG
1 CCGGCTGGCGCATCCCACCCCTCTGG
2486401 CCGGCTG
1 CCGGCTG
2486408 AGAGCTCGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.07, C:0.49, G:0.27, T:0.17
Consensus pattern (26 bp):
CCGGCTGGCGCATCCCACCCCTCTGG
Found at i:2486472 original size:26 final size:26
Alignment explanation
Indices: 2486442--2486494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2486432 GTTGACTTAG
*
2486442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2486468 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2486494 G
1 G
2486495 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2486603 original size:173 final size:173
Alignment explanation
Indices: 2486375--2486697 Score: 493
Period size: 173 Copynumber: 1.9 Consensus size: 173
2486365 ACCCCTCTGG
* * * ** **
2486375 CCGGCTGGCGCATCCCACCCCTCTGGCCGGCTGAGAGCTCGTATGCTTATTTCATGGGTTGACTT
1 CCGGCTGGCGCAACCCACCCCTCTGACCGGCTGAGAGCCCACACCCTTATTTCATGGGTTGACTT
* * * *
2486440 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATTGG
66 AGGCATACGAAGTTCATTCCCAGGCTAAGCATACGCAGTTCATTCCCAATCTAAGATCGGACTGG
*
2486505 ACCGAGGGTTGCGACAGCACGCAGAGGGGGACCCGATCGATCC
131 ACCGAGGGTTACGACAGCACGCAGAGGGGGACCCGATCGATCC
* * *
2486548 CCGGCTTGCGCAACCCACCCCTCTGACCGGCTGAGCGCCCACACCCTTGTTTCATGGGTTGACTT
1 CCGGCTGGCGCAACCCACCCCTCTGACCGGCTGAGAGCCCACACCCTTATTTCATGGGTTGACTT
*
2486613 AGGCATACGAAGTTCATTCCCAGGCTAAGCATACGCAGTTCATTCCCAATCTGAGATCGGACTGG
66 AGGCATACGAAGTTCATTCCCAGGCTAAGCATACGCAGTTCATTCCCAATCTAAGATCGGACTGG
*
2486678 ACTGAGGGTTACGACAGCAC
131 ACCGAGGGTTACGACAGCAC
2486698 ATGCTGGGCT
Statistics
Matches: 133, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
173 133 1.00
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.22
Consensus pattern (173 bp):
CCGGCTGGCGCAACCCACCCCTCTGACCGGCTGAGAGCCCACACCCTTATTTCATGGGTTGACTT
AGGCATACGAAGTTCATTCCCAGGCTAAGCATACGCAGTTCATTCCCAATCTAAGATCGGACTGG
ACCGAGGGTTACGACAGCACGCAGAGGGGGACCCGATCGATCC
Found at i:2490144 original size:26 final size:26
Alignment explanation
Indices: 2490114--2490166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2490104 GTTGACTTAG
*
2490114 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
2490140 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
2490166 G
1 G
2490167 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:2493457 original size:26 final size:26
Alignment explanation
Indices: 2493421--2493472 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2493411 GTTGACTTAG
* * *
2493421 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2493447 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2493473 AATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2493704 original size:26 final size:26
Alignment explanation
Indices: 2493665--2493716 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2493655 ACTTGGCCCA
* *
2493665 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGATCATTCCCAATCTAAG
2493691 CATACAGAGATCATTCCCAATCTAAG
1 CATACAGAGATCATTCCCAATCTAAG
2493717 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (26 bp):
CATACAGAGATCATTCCCAATCTAAG
Found at i:2493866 original size:243 final size:244
Alignment explanation
Indices: 2493422--2493907 Score: 636
Period size: 243 Copynumber: 2.0 Consensus size: 244
2493412 TTGACTTAGG
* * * ** *
2493422 CATACGGAGTTCATTGCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAAATCGGACCGGACC
1 CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAAATCAAACCAGACC
* * * * * *
2493487 GAGGTTTGCGGTAGCACATGCTCGGCTCGCGCATGTGCTGGTGCCACATTTTTCTTTTTTGGGGT
66 GAGGGTTGCGGTAGAACATGCTCGGCTCGCGCATGTGCTGGTGCCACAATTTTCTTTGTCGGGGC
* * * * *
2493552 GCCATCGTCGGAGCATTGCAGGAGAACCTGACCGGCGGGATTGGGGTTTCGACCATCAGGGGGGC
131 ACCATCGTCAGAGCATTGCAGGAGAACCTGACCGACGGCATTGGGGTTCCGACCATCAGGGGGGC
*
2493617 C-GGGGGGTGTGCACACATGTTATGCGATGGGTGCTGGTACTTGGCCCA
196 CGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCA
* *
2493665 CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAAACTAGACC
1 CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAAATCAAACCAGACC
* * ***
2493730 GAGGGTTGCGGTAGAACATGCTGGGCTCGGGCATGTGCTGGTGCTGTAATTTTCTTTGTCGGGGC
66 GAGGGTTGCGGTAGAACATGCTCGGCTCGCGCATGTGCTGGTGCCACAATTTTCTTTGTCGGGGC
* * * *
2493795 ACCATTG-CAAGAGCATTGCCA-GAGAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
131 ACCATCGTC-AGAGCATTG-CAGGAGAACCTGACCGACGGCATTGGGGTTCCGACCATCAGGGGG
* * * *
2493858 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCC
194 GCCGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
2493908 TTATATTGGC
Statistics
Matches: 207, Mismatches: 33, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
242 1 0.00
243 162 0.78
244 44 0.21
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (244 bp):
CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAAATCAAACCAGACC
GAGGGTTGCGGTAGAACATGCTCGGCTCGCGCATGTGCTGGTGCCACAATTTTCTTTGTCGGGGC
ACCATCGTCAGAGCATTGCAGGAGAACCTGACCGACGGCATTGGGGTTCCGACCATCAGGGGGGC
CGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCA
Found at i:2495333 original size:26 final size:26
Alignment explanation
Indices: 2495303--2495353 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2495293 GTTGACTTAG
*
2495303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2495329 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
2495354 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2495992 original size:26 final size:26
Alignment explanation
Indices: 2495956--2496034 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
2495946 GTTGACTTAG
2495956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2495982 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
2496008 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2496034 G
1 G
2496035 ATCAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2497804 original size:26 final size:26
Alignment explanation
Indices: 2497757--2497858 Score: 105
Period size: 26 Copynumber: 3.9 Consensus size: 26
2497747 GTTGAATTAG
* *
2497757 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
2497783 GCGTATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* * ** *
2497809 CCATATGAAGTTCATTCGAAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
** *
2497835 GCATACAGTGTTCATTCCCAGTCT
1 GCATATGGAGTTCATTCCCAGTCT
2497859 GAGATCAGAT
Statistics
Matches: 59, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2498738 original size:26 final size:26
Alignment explanation
Indices: 2498709--2498761 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2498699 GTTGACTTAG
*
2498709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
2498735 GCATATGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
2498761 G
1 G
2498762 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:2500370 original size:26 final size:26
Alignment explanation
Indices: 2500318--2500370 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2500308 GTTGACTTAG
* **
2500318 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2500344 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2500370 G
1 G
2500371 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2501252 original size:26 final size:26
Alignment explanation
Indices: 2501216--2501268 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2501206 GTTGACTTGG
2501216 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
2501242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
2501268 G
1 G
2501269 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:2501822 original size:899 final size:897
Alignment explanation
Indices: 2499443--2503130 Score: 4840
Period size: 890 Copynumber: 4.1 Consensus size: 897
2499433 GTTGACTTAG
* * * * *
2499443 GCATACGGAGTTCATT-CCAGTCTAAGATCAGAGCGGACCAAGGGTT-ACGGTAGAACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGA-GGCAGCACATGCTGG
** * *
2499506 GCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CTAGA
65 GCTCAAGCATGTGCTGG-CT-GTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * * *
2499570 GAACTTGACCGACGACATTGGGGTTCCGACGA-TCGAGGGTGCCAGGGGGTGTGCGCACATCATG
127 GAACCTGACCGACGGCATTGGGGTTCCGACAACTCG-GGGGGCCAGGGGGTGTGCGCACATGATG
*
2499634 TGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2499699 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
2499764 ATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2499829 TGTGCATGCCAAAAAAAATACAAGGATCATATCTACCAAATTTGGGGCCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAA
* * ** *
2499894 AAATTGTAAAAAATCTCAAACTACAAAAAGTTTTAAAAA-CATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCAAACGCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
2499958 TTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
2500023 CATTGGCACGCAAAAACATGTAGATGTGCTTAAACCCACCTACCACCCTATCGATCCATGGCTTG
581 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2500088 CGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGGCCGCCCGCCCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCATCGGTTG
* * **
2500153 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGA
* * * ** * * *
2500218 TCGGCAGCAGGTAGAGGGGGACCCGGTCGATCCCCGGCTTCCGCATCCTGCCCCTCTGGCCGGCT
772 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
* * * *
2500283 GAGCGCCCGCATGCAT-GATTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAA
837 GAGCGCCCGCACGC-TCGATTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
2500344 GCATACGGAGTTCATTCCCAATTTAAGATCGGATCGGATCGAGGGTTGTGGCCGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGAGGCAGCACATGCTGGG
** * * * *
2500409 CTCGGGCATGTGCTGG-TGTCACATTTTTCTTCATCAGGGCACAATCGTCGGAGCATCGTTGGAG
66 CTCAAGCATGTGCTGGCTGT---ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** * * * *
2500473 AACCTGATCGGTGGCACTGGGGTTCCAACGA-TCGGGGGGCCAAGGGGTGTGCGCACATGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGACAACTCGGGGGGCCAGGGGGTGTGCGCACATGATGTG
* * * *
2500537 CGATGTGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATTCCACATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2500602 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2500667 GCGGG-CACTCTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
323 G-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2500731 GTGCCTGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAA
** * *
2500796 AATTTTAAAAAATCCCAAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGACT
452 AATTTTAAAAAATCCCAAACGCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
2500861 TGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTCTACGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
2500926 ATCGACACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCATATCAATCCACGGCTTGC
582 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
2500991 GCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
** * * ** * ** *
2501056 GGCATATAGAGTTCATTCCCTA-TCTAAGATCGGACAGGACTGAGGGTTGTGGCAGTTGGATCGG
712 GGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGA
* * * *
2501120 CAGCACGCAGAGGGGGACCCAACTGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCTGGCTGAGT
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* *
2501185 GCCCGCACGCTCGTTTCGTGGGTTGACTT-GGGCATACGGAGTTCACTCCCAGTCTAA
841 GCCCGCACGCTCGATTCGTGGGTTGACTTAGGG-ATACGGAGTTCATTCCCAGTCTAA
* * * *
2501242 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGAGGCAGCACATGCTGGG
* * *
2501307 CTCAAGCATGTGCTGGCACTGTATTTTTCTTTGCCGGGGTACCATCGTCGGAGCATCGTCGGAGA
66 CTCAAGCATGTGCTGG--CTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
2501372 ACCTGACCGACGGCATTAGGGTTACGGCAACT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACAACTCGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
** * *
2501436 TAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGATCTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2501501 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AA
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
2501565 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTGCGAGTTTTTAGCTGAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAA-TTTTT
* * * * * *
2501629 TTTTGCATGCCAACAAAAATACAATGAGCACGTCTA-TATAGTTTGGGGCCAAAACCCCTTCCGA
385 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA-AGTTTGGGGCCAAAACCCCTTCCAA
* *
2501693 AAGAATTTTAAAAAATCCCAAAC-CCAATAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCCCAAACGCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
** * *
2501757 TCTTAACATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
2501822 GGCATTGGCATGCAGAAATATGAATATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2501887 TGCGCATTCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* *
2501952 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCAG
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAG
* * * * **
2502017 GATCGATAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCGTCCCTTCCCTCTGGCTGG
770 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGG
* * * * * *
2502082 TTGAGCCCCCACACCCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAG
835 CTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
* * * *
2502145 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCAAGGGTT-ACTGCAGCAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGA-GGCAGCACATGCTGG
* * **
2502209 GCTCAAGCATGTGCTGGTGCCGCATTTTTC-T--TC---G------C--CGGAGCATCACCGGAG
65 GCTCAAGCATGTGCT-G-GCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
2502260 AACCTGACTGACGGCATTGGGGTTCCGACGA-TCGGGGGGGCCGGGGGGGTGTGCACACATGATG
128 AACCTGACCGACGGCATTGGGGTTCCGACAACTC-GGGGGGCC-AGGGGGTGTGCGCACATGATG
* *
2502324 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2502389 ACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2502454 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
2502519 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCGAGAA
386 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAA
* *
2502584 AAATTTTAAAAAATCCCGAAC-CACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
451 AAATTTTAAAAAATCCCAAACGC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
2502648 CTTGCCATGAAACTTCATGTGAAGGCTTCAAGGGCCATTGTATGAATTTAGAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2502713 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
580 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2502778 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
2502843 TAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGTAGTAAGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCG
* ** * * *
2502908 ACAGCACGTAGAGGGGGACCCGACCGATCCATGACTTACGCGTCCCGCCCCTCTGGCTGGCTGAG
775 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* *
2502973 CGCCC-CACGCTC-ATTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGATTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
* * * *
2503029 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGAGGCAGCACATGCTGGG
* *
2503094 CTC-GGACGTGTGCTGG-TGTCGCATTTTTCTTCGTCGG
66 CTCAAG-CATGTGCTGGCTGT---ATTTTTCTTCGTCGG
2503131 AGCATTGTCG
Statistics
Matches: 2450, Mismatches: 291, Indels: 104
0.86 0.10 0.04
Matches are distributed among these distances:
881 1 0.00
882 1 0.00
883 2 0.00
884 113 0.05
885 7 0.00
886 149 0.06
887 2 0.00
888 1 0.00
889 123 0.05
890 392 0.16
891 3 0.00
897 4 0.00
898 323 0.13
899 366 0.15
900 85 0.03
901 315 0.13
902 290 0.12
903 268 0.11
904 4 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGAGGCAGCACATGCTGGG
CTCAAGCATGTGCTGGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACAACTCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATT
TTAAAAAATCCCAAACGCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
CACGCTCGATTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
Found at i:2502152 original size:26 final size:26
Alignment explanation
Indices: 2502116--2502166 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2502106 TGGGTTGACT
*
2502116 TAGGGATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
2502142 TAGGCATACGGAGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATTCCCAGT
2502167 TTAAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:2503036 original size:26 final size:26
Alignment explanation
Indices: 2503006--2503055 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2502996 GACTTAGGGA
2503006 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
2503032 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2503056 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:2503261 original size:26 final size:26
Alignment explanation
Indices: 2503231--2503280 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2503221 TGACTTTGGG
2503231 ATACGGAGTTCATTCCCAGTCTAAAC
1 ATACGGAGTTCATTCCCAGTCTAAAC
2503257 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
2503281 GATCGGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAAC
Found at i:2503324 original size:226 final size:226
Alignment explanation
Indices: 2502947--2503447 Score: 745
Period size: 226 Copynumber: 2.2 Consensus size: 226
2502937 CATGACTTAC
* * * *
2502947 GCGTCCCGCCCCTCTGGCTGGCTGAGCGCCCCACGCTC-ATTCATGGGCTGACTTAGGGATACGG
1 GCGTCCCGCCCCTCTGGCCGACTGAGCGCCCCACGCTCGTTTCATGGGTTGACTTAGGGATACGG
* * *
2503011 AGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCCAAGGGTT
66 AGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
* * * ** * *
2503076 GCGGCAGCACATGCTAGGCTCGGACGTGTGCTGGTGTC-GCATTTTTCTTCGTCGGAGCATTGTC
131 GCGACAGCACATGCTAGGCTCGGACGCGTGCTGGTGCCTGCATTTTTCTTCACCGAAGCATCGTC
** *
2503140 GGAGAACCTGACTGGCCGATCCCTGGCTTGT
196 GGAGAACCTGACTGGCCGATCCCCAGCTTGA
*
2503171 GCGTCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTTGGGATACG
1 GCGTCCCGCCCCTCTGGCCGACTGAGCGCCC-CACGCTCGTTTCATGGGTTGACTTAGGGATACG
*
2503236 GAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGT
65 GAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGT
* *
2503301 TGCGACAGCACATGCTGGGCTCGGGCGCGTGCTGGTGCCTGCATTTTTCTTCACCGAAGCATCGT
130 TGCGACAGCACATGCTAGGCTCGGACGCGTGCTGGTGCCTGCATTTTTCTTCACCGAAGCATCGT
* *
2503366 TGGAGAACTTGACTGGCCGATCCCCAGCTTGA
195 CGGAGAACCTGACTGGCCGATCCCCAGCTTGA
* *
2503398 GCGTCCCGCCCCTCTGGCCGACTGAGCGCCTGCATGCTCGTTTCATGGGT
1 GCGTCCCGCCCCTCTGGCCGACTGAGCGCC-CCACGCTCGTTTCATGGGT
2503448 CGGGGGGGTG
Statistics
Matches: 248, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
224 29 0.12
225 7 0.03
226 117 0.47
227 95 0.38
ACGTcount: A:0.16, C:0.30, G:0.29, T:0.24
Consensus pattern (226 bp):
GCGTCCCGCCCCTCTGGCCGACTGAGCGCCCCACGCTCGTTTCATGGGTTGACTTAGGGATACGG
AGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
GCGACAGCACATGCTAGGCTCGGACGCGTGCTGGTGCCTGCATTTTTCTTCACCGAAGCATCGTC
GGAGAACCTGACTGGCCGATCCCCAGCTTGA
Found at i:2504150 original size:26 final size:26
Alignment explanation
Indices: 2504114--2504166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2504104 GTTGACTTAG
*
2504114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2504140 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
2504166 G
1 G
2504167 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:2505878 original size:717 final size:718
Alignment explanation
Indices: 2504140--2506965 Score: 3962
Period size: 704 Copynumber: 3.9 Consensus size: 718
2504130 CCCAGTCTAA
* * * * * * * *
2504140 GCATACGGAGTTCATTCCCAGACTAAGATTGGATCGGATCGAGGGTTGCGACAGCATATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *** * *
2504205 CTCAGGCATGTGCTGGTGAAGCATTTATCTTCGTCGGGGCACCATCGTTGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
2504270 ACCTGACCGGC-AGCATTGCGGTTCCGACGATCGGGGGGGTCGAGTGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGA-CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
2504334 GAGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAGACCTCGAGAACTCAC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2504399 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAAT
* *
2504463 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
2504528 AGCATGCCAAAAAAAATACAAGGATCACATCTACCTAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
* * * *
2504593 ATTTTAAAAAATGTCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
* *
2504658 GCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2504723 TTGGCACT-CTA-AAATATGAATATGTTCCTAAACCCACCTACCACCCTATCTATCCACGGCTTG
585 TTGGCA-TGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
2504786 CGCATCCCGTCTCTCTGGCCGGCGTA--G--T----G--C-C-CGCCCGCTCGTTTCTTTGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCGCTCGTTTCTTCGGTTG
2504839 GCTTAG
713 GCTTAG
* * * *
2504845 GCATACGGAGTTCAGT-CCAATCTAAGATCGGACAAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * *
2504909 CTAGGGCATGTGCGGGTACCATAATTTTCTTCATC-GGGCACCATTACCGGAGCACCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
2504973 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGGTGT
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
* * *
2505038 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAATCTCGAGAACTAA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2505103 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-CTAAAGTGTAC-GA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATC-AAAGTGT-CTGA
*
2505166 AATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
2505230 TTGTGCATGCCAACAAAAATACAACGATCACGTCTATCAAGTTTGGGG-CAAAACTACTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAA
* * * * *
2505294 AAAATTTTAAAAAATCTCGAACCTTAAAAATTTTCGAAAATCATGAAAAATTG-AAATCGAGTTG
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAT-GAGTCG
* *
2505358 TCTTGCCATGAAACTCCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAA
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAA
*
2505422 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
2505487 TTATGCATCCTGTCTCTCTGGCCGTCGTAGTGCCTGCCCGCCCGCTCGCCCGCTCGTTTCATCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCGCTCGTTTCTTCGG
*
2505552 TTGACTTAG
710 TTGGCTTAG
*
2505561 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2505626 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
2505691 ACCTGACCTGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGCGCGCACATGATGCG
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** * * *
2505756 CGATGGGTGCTATTACTTGGCCCTTATATTGGCCTGCTATCCCCCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2505821 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTGGCCATCAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAAT
* * *
2505886 GGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2505951 TGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACCTT-TGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTA-CTTCCGAAAA
* * * * *
2506015 AATGTTGAATAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
2506080 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2506145 ATTGGCAAGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
2506210 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTCGGCCCGCTCGTTTCT
649 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCTGCCCGCCCG--C-TC-GCCCGCTCGTTTCT
2506275 TCGGTTGGCTTAG
706 TCGGTTGGCTTAG
* * * *
2506288 GCATACGGAGTTCATTCCTAGTCTAAAATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2506353 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATTGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
2506418 ACCTGACAGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACTTGATGTG
131 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
2506482 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCTCATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT-ATCCCTCATCAAACCTCGAGAACTCAC
* * * *
2506547 ACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAAT
*
2506612 GGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
2506677 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC-GAACTCCTTCTGAAAGA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
* * * * *
2506741 ATTTTAAAAAATCTCGAACTGTAAAAAGTTTCCAAAATCTTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
2506806 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CGCATAAAAATGGC
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGC
*
2506870 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
2506935 GCATCCCGCCTCTCTGGCCGGGCGTACTGCC
649 GCATCCCGTCTCTCTGGCC-GGCGTAGTGCC
2506966 CCGCCTTGCC
Statistics
Matches: 1874, Mismatches: 203, Indels: 71
0.87 0.09 0.03
Matches are distributed among these distances:
703 63 0.03
704 315 0.17
705 122 0.07
706 83 0.04
707 1 0.00
708 1 0.00
712 1 0.00
714 1 0.00
715 1 0.00
716 43 0.02
717 229 0.12
718 141 0.08
719 206 0.11
720 9 0.00
722 3 0.00
723 12 0.01
724 4 0.00
725 208 0.11
726 249 0.13
727 182 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCGCCCGCTCGTTTCTTCGGTTGGCT
TAG
Found at i:2508105 original size:26 final size:26
Alignment explanation
Indices: 2508075--2508127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2508065 GTTGACTTAG
*
2508075 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2508101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2508127 G
1 G
2508128 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2509005 original size:26 final size:26
Alignment explanation
Indices: 2508969--2509021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2508959 GTTGACTTAG
*
2508969 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
2508995 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
2509021 G
1 G
2509022 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:2509727 original size:904 final size:897
Alignment explanation
Indices: 2506288--2512533 Score: 7176
Period size: 904 Copynumber: 6.9 Consensus size: 897
2506278 GTTGGCTTAG
* * *
2506288 GCATACGGAGTTCATTCCTAGTCTAAAATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2506353 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATTGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
2506418 ACCTGA-CAGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACTTGATGTG
131 ACCTGACCA-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
2506482 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CACCTCATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCA
* * * *
2506546 CACCCCCTTAAAGAGCACTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAA
259 CACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2506611 TGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2506676 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCGAACTCCTTCTGAAAGA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTCCTTCT-AAAAA
** * * *
2506741 ATTTTAAAAAATCTCGAACTGTAAAAAGTTTCCAAAATCTTGAAAAATAGAAAACGAGTCATCTT
452 ATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
2506806 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CGCATAAAAATGGC
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGC
* *
2506870 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * **
2506935 GCATCCCGCCTCTCTGGCCGGGCGTACTGCC--CCGCCTTG-CC-CACCTTG-TTCAGTCAATTG
646 GCATTCCGTCTCTCTGGCC-GGCATAGTGCCGTCCGCC-CGCCCGCTCCTCGTTTC-GTCGGTTG
* * * * * *
2506995 GCTTAGGGATACGAAACGTTCATTCCCCAGTCTAAGATCATACCGGAAATGAGGGTTGCAGCAGC
708 GCTTAGGCATACG-GA-GTTCATT-CCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGC
* * * * *
2507060 AGGATCGGCAGCACGGCAGAGGGGGACCC-AGCTGAATACCCCCGGCTTACACATCCCACCCCTC
769 AGGATCGGCAGCAC-GTAGAGGGGGACCCGA-CCG-AT---CCCGGCTTGCGCATCCCGCCCCTC
* * * *
2507124 TGGCCGGTCTGAAGCGCCCGCACGCTTGTTTCAAT-GGTTGACATTAGGCAGACTGAGTGCATTT
828 TGGCCGG-CTG-AGCGCCCGCACGCTCGTTTC-ATGGGTTGAC-TTAGGCATACGGAGTTCA-TT
*
2507188 CCTAG-CTAA
888 CCCAGTCTAA
* * **
2507197 GCATGACAGGAGTTTCATT-CCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGTGGCACATGCT
1 GCAT-AC-GGAG-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
** * * * **
2507261 -GGAACGGGCATGTGGTCGGTGCCACA-TTTTCTTCGGCCT-GGGCA--A---CC--AAAATCGC
63 GGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTC-G-TTGGGGCACCATCGCCGGAGCATCGC
* * * *
2507316 CGGAGAACTTTGACCACCGCGGAATTTGGGGTTCCGACGATCGGAGGGGTCGGGGGGTGTGCGCA
125 CGGAGAAC-CTGACCA--GCGGCA-TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
* *
2507381 CATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
186 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
2507446 ACAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGT
251 AGAACTCACACC-CCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
2507511 GTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
315 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * *
2507576 ATTTTTTTGTGCATGCCAACAAAGCTA-AGAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC
380 ATTTTTTTGTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCC-AAACTCC
* * * * *
2507640 TTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
443 TT-CTAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * *
2507705 GAGTTGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCAG
507 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
2507770 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCC
572 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * **
2507835 ACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCGGCCCGTCCGCCTACCCGCTCGCTCG
637 ACGGCTTGCGCATTCCGTCTCTCTGGCCGGCATAGT----G-CCGTCCGCCCGCCCGCTC-CTCG
* * *
2507900 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA--GTT
696 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* ** * *
2507963 GTGATAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGCCC
761 GCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCC
* *
2508028 CTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
825 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
*
2508093 TAGTCTAA
890 CAGTCTAA
* * *
2508101 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ***
2508166 GTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCAGGGCACCAT--------CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
2508220 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTTGTGGGCACATGATGT
131 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGG-TGTGCGCACATGATGT
* *
2508285 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2508350 CACCCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
259 CACCCCC-T-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2508415 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGCATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2508480 TGTGCATGCCCACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGTCTAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAACTCCTTCT-AAA
* * ** *
2508545 AAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
2508610 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2508675 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
580 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
2508740 TGCATCCCGTCTCTCTGGCC-GCATAGTACCTGCCCGCCCGCCCGCCCACTCGTTCCGTCGGTTG
645 CGCATTCCGTCTCTCTGGCCGGCATAGTGCC-GTCCGCCCGCCCGCTC-CTCGTTTCGTCGGTTG
* * * * *
2508804 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCACCAAGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
** * * * *
2508869 TCGATAGCACGCAGAGGGGGACCCCACCGATCCCTGGCTTACGCATCCCGTCCCTCTGGCCGGCT
773 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
2508934 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2508995 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2509060 CTCTGGAATGTACTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** *
2509125 ACTTGACCAGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGAGGGTGTGTGCACATGATGT
131 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGT
* *
2509190 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2509255 CACCCCCTAGAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTATCCATTAAAATGTCTGAAA
259 CACCCCCTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2509320 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
2509385 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCTAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCTAAAAA
* * * *
2509450 ATTTTTAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
452 ATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
2509515 GCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTAAAATCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
2509580 TTGGCACATAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
2509645 CATTCCGTCTCTCTGGCCGGCATAGTGCCGGTCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
647 CATTCCGTCTCTCTGGCCGGCATAGTGCC-GTCCGCCCGCCCGCTC-CTCGTTTCGTCGGTTGGC
* * * * * * * ***
2509710 TTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGATCGGATTGAAGGTCGCAAAAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* * *** * * *
2509775 GGCAACACGTAGAGGGGCACCCGGTTGATCCCAGGCTTACGCATCCCGTCCCTTTGGCCGGCTGA
775 GGCAGCACGTAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
2509840 GTGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCACTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2509899 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2509964 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGAGG---CA---CC----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
2510019 ACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 ACCTGACCAG-CGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGT
* ** *
2510083 GCAATGGGTGCTGGTGGTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2510148 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCAGCCA-TAGCCATTAAAGTGTTTGAA
259 CACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAA
*
2510212 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
2510277 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGTCCTTCCGAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTCCTT-CTAAAA
* ** * * * *
2510342 AATTTTAAAAAATCTCGAACCGCAAAAAAGTTTTGAAAATTATGAAAAAATAAAAAACAAGTTGT
451 AATTTTAAAAAATCTCGAACC-CTAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGTCGT
* *
2510407 CTTGCCATGAAACTTCACGTG-AGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2510471 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2510536 ACGC-TTCCCATCTCTCTGGCC-G-A-CGT--AGT--GCCCGCCCG---CTCGTTTCGACGGTTG
644 GCGCATT-CCGTCTCTCTGGCCGGCATAGTGCCGTCCGCCCGCCCGCTCCTCGTTTCGTCGGTTG
* * * * * *
2510590 GCTTAAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACTAAGGGTTGTGGTAGCAGG
708 GCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
* *
2510655 ATCGAG-AGCACGTAGAGGGGGACCCGACCGATCCCACGGCTTGCGCATCTCGCCCCTCTAGCCG
772 ATCG-GCAGCACGTAGAGGGGGACCCGACCGAT-CC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
2510719 GTTGAGCTCCCGCACGCTCG--T--T---TTG--TT-GG-TTA---A---C-TT---AG-----
834 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2510757 GTATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2510822 CTCAGGCATGTGCTGGTGCCGTATTTTT-TTTGTTGGGGCACCATCGTCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAG-
* * * *
2510886 AACCTGGCC-GACGACATTGGGGTTCCGACGATC-TGGGGGTCGGGGGGCTGTGCGCACATGATG
130 AACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATG
* * * * *
2510949 TGTC-ATGGGTGCTGGTACTTGGCCCTTATTTTGG-CCCCTATCCCTCATCAAAACTTGAGCACA
193 TG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
2511012 CACGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACAC-CCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
2511077 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
2511140 TTGTGCATGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAACCTCGGTCCGAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTC-CTTCTAAA
* * *
2511205 AAATTTTAAAAAATCTCAAACCGC-AAAAATTTTCATAAATCATGAAAAATAGAAAACGAGTCGT
450 AAATTTTAAAAAATCTCGAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
2511269 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2511334 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCCCTACCGATCCACGGC
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-A-CCCTATCGATCCACGGC
* * ** *
2511399 TTAACGCCATTCCCGGTGCTGCTCCTGGCCAGCGCA-AGTGGCCCGCCCGTCAAGCCCGGCACCT
642 TT-GCG-CATT-CC-GT-CT-CT-CTGGCC-G-GCATAGT-G-CCGTCCG-CCCGCCC-GCTCC-
* * * * *
2511463 TTCGTTGTCGACAGTTGGCTTCGGTATACGGATTTCATTTCCCAGGTCTAAGCATCAGACCAGAG
693 -TCGTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCA-GTCTAAG-ATCAGACCAGA-
* * * * * ** *
2511528 CTGAGCGCGTTAAGCGGTAGCAGGATCCGGTAGCATGCAGGGGGGGACCAATATCGAGTCCACGG
752 CTGAG-G-GTT--GCGGCAGCAGGAT-CGGCAGCACGTAGAGGGGGACC-CGACCGA-TCC-CGG
* *
2511593 CTTGCGCGCATTCCCGGGCCCCTCTGGCCCGACTGAGCGCCTCGCACGCTCGTTATCGCTGTGGT
809 CTT--GCGCA-TCCC--GCCCCTCTGG-CCGGCTGAGCGCC-CGCACGCTCGTT-TC-ATG-GGT
*
2511658 CTGACTTAGGGCATACGGGAGTTCAATTACCAGTCTAA
864 -TGACTTA-GGCATAC-GGAGTTC-ATTCCCAGTCTAA
* * *
2511696 GCATAGCGGAGTAGCATTTCGCCAGTCTAAGATCAGGACCAGGACCGTGGGTTACGGCAGCACAT
1 GCATA-CGGAGT-TCA-TTC-CCAGTCTAAGATC-GGACC-GGACCGAGGGTTGCGGCAGCACAT
* * * * * *
2511761 GCTGGGCTCGAGCCTGTGCTGGTG-CGTATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCGT
60 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGC
* * * * *** *
2511825 CGGAGAACCTGGCTAACGGCATT-GGGTTCCGATGATTTTGGGGGTCGGGGGGTGTGCGCACATG
125 CGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * *
2511889 GTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
2511954 CTCACACTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCT
255 CTCACAC-CCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2512019 GGAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
2512084 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAACCTTCTT-TCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTCCTTCT-A
* * * *
2512148 AAAAATTTTAAAAAATCTCTAACCGC-AAAAAGTTTCAAAGATCGTGAAAAATAGAAAATGAGTC
448 AAAAATTTTAAAAAATCTCGAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
2512212 GTCTTGCCATGAAACTTCACGTGAA-GCTT-AGCAGACCATTGTATGAATTTCCAAGCCAT-AAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
2512274 ATGGCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCA-CTACCACGCTATCGGATCCATG
576 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACG
* * * *
2512338 GCTTACCGCCA-TCCTGTCTCTCTGGCCGGCATAGTG-C--CCACCCG-CC-CT-CTCTTTTCGA
640 GCTT-GCG-CATTCC-GTCTCTCTGGCCGGCATAGTGCCGTCCGCCCGCCCGCTCCTCGTTTCGT
* ** *
2512396 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC-AAGATC-GAAAAAGACTGAGGGTTGTGGC
702 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGC
* * * *
2512459 AGCGGGATTGGCAGCACGTAGAGGGGGACCCGGCCGATCCACGGCTTGCGCATCCCACCCCTCTG
766 AGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTG
**
2512524 GTAGGCTGAG
830 GCCGGCTGAG
2512534 TGCNNNNNNN
Statistics
Matches: 4640, Mismatches: 507, Indels: 385
0.84 0.09 0.07
Matches are distributed among these distances:
857 7 0.00
858 79 0.02
860 2 0.00
862 38 0.01
863 104 0.02
864 85 0.02
865 70 0.02
866 101 0.02
867 59 0.01
868 37 0.01
869 1 0.00
870 3 0.00
871 2 0.00
872 6 0.00
873 2 0.00
874 2 0.00
875 3 0.00
876 3 0.00
877 2 0.00
880 2 0.00
882 21 0.00
883 77 0.02
884 43 0.01
885 1 0.00
886 9 0.00
887 1 0.00
888 2 0.00
889 18 0.00
890 18 0.00
891 11 0.00
892 89 0.02
893 270 0.06
894 424 0.09
895 60 0.01
896 89 0.02
897 385 0.08
898 29 0.01
899 13 0.00
900 1 0.00
901 15 0.00
902 60 0.01
903 233 0.05
904 513 0.11
905 177 0.04
906 24 0.01
907 35 0.01
908 270 0.06
909 222 0.05
910 51 0.01
911 78 0.02
912 26 0.01
913 15 0.00
914 19 0.00
915 17 0.00
916 5 0.00
917 30 0.01
918 10 0.00
919 5 0.00
920 3 0.00
921 8 0.00
922 27 0.01
923 4 0.00
925 1 0.00
926 2 0.00
928 2 0.00
929 3 0.00
930 2 0.00
931 2 0.00
932 1 0.00
934 6 0.00
935 4 0.00
936 6 0.00
937 2 0.00
938 2 0.00
939 8 0.00
940 11 0.00
941 20 0.00
942 9 0.00
943 114 0.02
944 168 0.04
945 205 0.04
946 56 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTCCTTCTAAAAAATTT
TAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATT
CCGTCTCTCTGGCCGGCATAGTGCCGTCCGCCCGCCCGCTCCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGTAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2509902 original size:26 final size:26
Alignment explanation
Indices: 2509873--2509925 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2509863 GTTAACTTAG
*
2509873 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
* * *
2509899 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
2509925 G
1 G
2509926 ATCGGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAATCTAA
Found at i:2515501 original size:710 final size:699
Alignment explanation
Indices: 2514139--2515608 Score: 2192
Period size: 710 Copynumber: 2.1 Consensus size: 699
2514129 GCCGGTTGAG
* * * *
2514139 CGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
1 CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
2514204 TCGGGCCGAGGTTTGCTGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCA
66 TCGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAATTTTCTTCA
* * ** * *
2514269 TCGGGGCACCATCGCCAGAGCATTGCTGGAGAACCTGACTGGTGGCATTGGCGTTCCGGCGATCG
131 TCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGCGTTCCGACGATCG
* * * *
2514334 AGGTGGGTGTGCGCGCATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCGTATC
196 AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACGTGGCCCTTATATTGGCCCCCTATC
* *
2514399 CCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCC
*
2514464 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
2514529 TGAGTTTTTAGCTAAATTTTTTTGTGCGTGCGAAAAAAATACAAGGATCAGGTCTACCATGTTTG
391 TGAGTTTTTAGCTAAATTTTTTTGTACATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTA
* * * * *
2514594 GGGCCAAAACTCCTTTTGAAAAAATTTGAAAAAATCCCGATCCGTAAAAAGTTTTGAAAATCGTG
456 GGGCCAAAACTCCTTTTGAAAAAATTTGAAAAAATCCCAAACCGTAAAAAGCTTCGAAAATCATG
*
2514659 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGA
521 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
2514724 ATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATGTACC
586 ATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* **
2514789 ACCCTATCGATCCACGACTCGCGCATCCCATCTCTCTGGCCG-TTATAAT
651 ACCCTATCGATCCACGACTCGCGCATCCCATCACTCTGGCCGACGA-AAT
* * *
2514838 GCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGACTTTATTCCCAGTCTAAGATC
1 ---CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
**
2514903 GGATCGGACCGAGGGTTG-TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTC
63 GGATCGGACCGAGGGTTGCT-GCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAATTTTC
* * * * * *
2514967 TTCGTCGGGGCACCATCGTCGGAGCATCGCCGGGGAACCTGACCAGCGGCATTGGGGTTCCGATG
127 TTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGCGTTCCGACG
* *
2515032 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATT
192 ATC------G-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACGTGGCCCTTATATT
* * *
2515097 GGCCCCCTATCTCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACA
250 GGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACA
2515162 GGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
315 GGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
2515227 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGT
380 CTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTACATGCCAA-AAAAATACAAGGATCACGT
*
2515292 CTACCAAGTTTAGGGCCAAAACT-CTTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGC
444 CTACCAAGTTTAGGGCCAAAACTCCTTT-TGAAAAAATTTGAAAAAATCCCAAACCGTAAAAAGC
* *
2515356 TTCGAAAATCATGACATATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
508 TTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
2515421 GCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCT
573 GACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATGAAGATGTGCCT
* *
2515486 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGCCGACGAAAT
638 AAACCCACCTACCACCCTATCGATCCACGACTCGCGCATCCCATCACTCTGGCCGACGAAAT
**
2515548 -GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATC
1 CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
2515609 AGACCAAATT
Statistics
Matches: 688, Mismatches: 69, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
701 1 0.00
702 167 0.24
706 56 0.08
708 1 0.00
709 217 0.32
710 245 0.36
711 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (699 bp):
CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
TCGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAATTTTCTTCA
TCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGCGTTCCGACGATCG
AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACGTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
TGAGTTTTTAGCTAAATTTTTTTGTACATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTA
GGGCCAAAACTCCTTTTGAAAAAATTTGAAAAAATCCCAAACCGTAAAAAGCTTCGAAAATCATG
AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGACTCGCGCATCCCATCACTCTGGCCGACGAAAT
Found at i:2515767 original size:26 final size:26
Alignment explanation
Indices: 2515738--2515790 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2515728 GTTGACTTAG
2515738 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
2515764 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACTGAGTTCATTCCCAGTCTAA
2515790 G
1 G
2515791 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:2518436 original size:26 final size:26
Alignment explanation
Indices: 2518407--2518459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2518397 GTTGACTTAG
*
2518407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
2518433 GCATACAGAGTTCATTCCGGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2518459 G
1 G
2518460 ATCCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2519345 original size:26 final size:26
Alignment explanation
Indices: 2519309--2519361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2519299 GTTGACTTAG
*
2519309 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2519335 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2519361 G
1 G
2519362 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2520230 original size:26 final size:26
Alignment explanation
Indices: 2520200--2520249 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2520190 GACTTAGGTA
*
2520200 TACGGATTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
2520226 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2520250 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:2522022 original size:26 final size:26
Alignment explanation
Indices: 2521986--2522038 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2521976 GTTGACTTAG
2521986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2522012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2522038 G
1 G
2522039 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2524707 original size:26 final size:26
Alignment explanation
Indices: 2524673--2524722 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2524663 TTGACTTAGT
2524673 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
2524699 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
2524723 GGATTGAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:2525301 original size:901 final size:902
Alignment explanation
Indices: 2514873--2540522 Score: 24587
Period size: 902 Copynumber: 28.4 Consensus size: 902
2514863 GTTGGCTTAG
* * * * *
2514873 GCATACGGACTTTATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
2514937 GCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
2515002 AACCTGACC-AGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
2515066 GCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCCAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2515131 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2515196 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2515261 GTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCTTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * * *
2515326 AATTTTAAAAAATCCCAAACCGTAAAAAGCTTCGAAAATCATGACATATAGAAAACGAGTCATCT
453 AATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2515391 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2515456 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
2515521 GCATCCCGTCACTCTGGCCGACGAAAT------------GCCCGCCCGTTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * * ** * *
2515574 CTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGGTTGCGGTAGCAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
2515639 TGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCGCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
2515704 AGCGTCCGCACGATCGTTTCTTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2515764 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2515829 CTCGGGCATTTGTTGGTGCCGCATTTTTCTTTGCCAGGGCACCAT---C---GCA-----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2515883 ACCTGACCGACGGCATTAGGGTTCCGACGATTGGGGGGGTCGGAGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGG-CCG-GGGGGTGTGCGCACATGATGT
*
2515948 GCGATGGGTG-TGGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
2516012 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2516077 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
2516142 TTTGCGTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
2516207 AAATTTTAAAAAATCCCGAACCGCAAAAA-TTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTC
452 AAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2516271 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
2516336 CATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCATATACCACCCTATCGATCAACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * **
2516401 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCACCCGCCTTCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * *
2516466 GCTTTGGCATATGGACTTCATTCCCAGTCTAACATCGGACCAAATCGAGGGTTGCGGCAGCAAGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGA
* * *
2516531 TCGGCAGCCCACAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGT
777 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
2516595 TGAGCGACCACATGCTCGTTTCTTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
2516657 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCT-GACCGAGGGTTGCGGCAGCATAAGATAG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
2516721 GCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCCGTAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
2516786 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCACACATGATTTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
2516851 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2516916 CCCCCTTAAAGAGC-TTCTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
260 CCCCCTTAAAGAGCATT-TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
2516980 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGATTTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTT
* * * * *
2517045 GTGCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGAGCCAAAA-TGCCTTGCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAA
* *
2517109 AAATTTTAAAAAA-TCCTGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATTCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
2517173 CTTGCCTTGAAACTTCACGTGAAGGGTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2517238 GCATTGGCATGCA-AGAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCT
581 GCATTGGCATGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
2517302 TGCGCATCCCGTCTCTCTGGCCGGCATAAT----GCCCACCCGCCCGTCCG-TACGTTTCGTCGG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCT-CGTTTCGTCGG
* * * * *
2517362 TTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTGCTGCAGTA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCA
* * **
2517427 GGATCGGCGGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCG
774 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
2517492 GTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2517552 -C-TA---AG---A-T--C-G-----GA-T----TGGACCGAGGGTTGCGGCACCAAATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2517595 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2517660 ACCTGACCGACGGCATTGGGGTTTCGATGATCGGAGGGGCCGGGGGGGTGTGCGCACACGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
2517725 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAGCCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2517790 ACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
2517855 GAGGACACTTTTTTTAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
2517920 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2517984 ATTTTAAAAAA-TCTTGAATCGCAAAAAGTTTCAAAAATCGTGAATAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2518048 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2518113 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
2518178 GCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCGTTTCGTTGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * ** *
2518243 CTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * **
2518308 TGGTAGCACGCAGAGGGGGACTCGACCGATCCCCAGCTTGCGGTTCCCGCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
2518373 AGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
2518433 GCATACAGAGTTCATTCCGGGTCTAAGATCCG-ACCGGAATC-AGGGTTGCGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGG-ACCGAGGGTTGCGGCAGCACATGCTG
* * *
2518496 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATTGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
2518561 GAACCTGACCGACGACATTAGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2518626 CGATAGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2518691 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2518756 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
2518821 TGCATGCCAAGAAAAATACAACGATCACATCTTCCAAGTTTGGAGCCAAAA-TGCCTTTCC-AAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CC-TTCCGAAA
* *
2518884 AAAGTTTAAAAAA-TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2518948 CTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2519013 GCATTGG-ATCGCTGTAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCT
581 GCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * *
2519077 TGCGCATCCCGTCTCTCTGGCCGGCACAGTGCCCACCCGCCTGCCCGCCCGCTCGTTTCGTCTGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
2519142 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGTAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
**
2519207 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCGTGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
2519272 CTGAGCGCTCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2519335 GCATACGGAGTTCATTCCCGGTCTAAGA-TCAGACCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
2519399 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGAGGTACCAT--------CA---TCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
2519453 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
2519518 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2519583 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
2519648 GAGGACACTTTTTTCAAACGATCACAAAATCTTGTGCACTTCGATTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2519713 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * ** * * *
2519778 ATTTTAAAAAATCCCAAATCGAAAAAAGTTTTGAAAATCATGAAGAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2519843 GCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAACGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2519908 TTGGCATGCAGAAATATGAAGATGTGCCGAATCCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
2519973 CATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCTGTCCGCCCGCTCGTTTCGTCAGTTGGG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** ** * * *
2520034 TTAGGCATACGGAGTTCATTCCCAGTCTGAGATTGGACTAGAATGATGGTTCCGGCAGCAAGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATC
* * * *
2520099 GGCAGCACGCAGACGGAGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
2520164 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGTATACGGATTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *** *
2520223 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2520288 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2520353 ACTTGACTGACGGCATTGGGGTTCCGGA-GATCGGGGGGTCGGGGGCGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGTG
* * * * * * *
2520417 CGATGTGTGTTGGGACCTGGCTCTTATATTGGCCCTCTATCCCTCATCAACCCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2520482 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * ** * *
2520547 AGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTAAGGTTTTAGTTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2520612 TGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
2520677 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTT
454 ATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2520742 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAGGCCATAAAACTGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2520807 TTGGCATGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
2520872 CATCCCGTCTCTCTGGCCGGCGTAAT----GCTCGCCCGTCCGCCCGCTCGCTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * ** * *
2520933 TTAGGCGTATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTAGCAACAAGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATC
* * *
2520998 GGCAGCACGCAGAGGGGGACCC-TTCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTG
779 GGCAGCACGCAGAGGGGGACCCGAT-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
2521062 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2521122 GCATATGGAGTTCATTCCCAGTCAAAGA-TCAGGCTGGAACGAGGGTGGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* **
2521186 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
*
2521240 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
2521305 CGATGGGTGCTGGTAC-TGAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 CGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2521369 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGATTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2521434 TGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCCGAATTGTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTT
* *** **
2521498 TGTGCATCCCAACAAAAATACAAGGATCGTATCTACCAAGTTCAGGGCCAAAACTCCTTCC-AAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
2521562 AAAATTTAAAGAAATCCCGAATCGTAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAATTTTAAA-AAATTCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2521627 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-ATG-ATTTACAAGCCATAAAGA-
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2521689 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *** * ** * * *
2521754 TGCGCATCTCGCCTTTCTGGCCGGTAAAGTGCCCGCCCGGCCGCTTGCCCACTTGTTTCGTCAGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** *
2521819 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
* * * *
2521884 GATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCAG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
2521949 TTGAGCGCCCGCACACTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
2522012 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
2522077 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
2522142 ACCTGACTGGCGGCATTGGGGTTCCGGA-AATCGGGGGGGTCGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGT
* *
2522206 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2522271 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTACAAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2522336 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2522401 GTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
2522466 AATTTTAAAAAA-TCCGAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2522530 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2522595 ATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CCCTATCGATCCACAGCTTG
583 ATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
2522659 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGCTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
2522724 GCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGGGTTGTGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
2522789 TCGACAGCACGTAGAGAGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCTGCT
777 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
2522854 GAACACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
2522915 GCATACAGAGTTCATTCCCAGTCGAAGATTGAATTAGACCGAGGGTTATGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *** * *
2522980 CTCGGGTATGTGCTGGTACCACATTTTTCTTTACCGGGGCACCAT--------CA---TCAGAGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * *
2523034 ACCTAACCGACAACATTGGAGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAGATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
2523099 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2523164 ACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2523229 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
2523294 CGCAAGACAAAAAAAATACAAGGATCACGACTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
2523359 ATTTTAAAAAA-TCTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
**
2523423 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
2523488 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** **
2523553 GCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCACGCCCGTGCGCTTGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
2523618 TTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * ** **
2523683 CGGCAGCATGCAGAGGGGGACCCAACCAATCACCGGCTTGCACATCCTTCCCCTCTGGTTGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * * *
2523748 AGCGCCCACACACTCATTTCATGGGTTCACTTAGGCTTACGGAGTTCATTCTCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
2523808 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAGACCGAACTGAGGGTTGCAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
2523872 GCTCGAGCATGTGCTGGTGCCAAATTTTTCTTTG-CTGGGGCACCAT--------CA-C--CGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * *
2523925 GAACCTGACCGACAGCATTGGGGTTCCAACGATCGAGGGGACGGGGGGTGTGTGCGCATGATGTG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
2523990 TGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2524055 ACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCAGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2524120 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
2524185 TGCATGCCAATAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACACCATCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2524250 ATTTTAAAAAA-TCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 ATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
2524314 TGCCATGAAACTTCACGTGGAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
2524379 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
2524444 GCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGTCCGCCCGCGCGCCCGCTCGTTTCATCGATTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
2524509 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAAACTGGACTGAGGGTTGTGGTAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
2524574 CGACAGCACGTAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
2524639 AGCG-TCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2524698 GCATATGGAGTTCATTCCCAGTCTAGGATTGAACTGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
2524763 CTGGGGCATGTGATGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
2524828 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGTACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * *
2524893 GATGGGTGCTGTTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2524958 CGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2525023 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
2525088 GCATGCCAA-AAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTTATTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
2525152 TTTTCAAAAATTCCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2525217 CCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
2525282 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
2525347 ATCCCGTCTCTATGGCTGGCGTAGTGCCCGCTCGCCCGCCTGCCTTCTCGCTCGTTTCATCAGTT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C--C-CGCTCGTTTCGTCGGTT
* * * * * * * *
2525412 GGCTTATGCATACGGAGTTCA-TCCCAGTCTAAGATTAGA-TCGGATCAAGGGTTGCGACTGCTG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAG
* * * * * * *
2525475 GATGGGCAGTACGAAGAGGGGTACCCGATCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
2525540 TTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2525603 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGTAGGACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * *
2525667 GCTCGAGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCAACGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
2525732 AACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTTC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
2525797 GGTGGCTGCTGGTACTTAGCCCTTATATAGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
2525862 CCCTCTTAAAGAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCGATTAAAGTGTCTAAAA
260 CCCCCTT-AA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2525927 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
2525992 GTGCATGCC-GCTAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACACCATCCGAAA
388 GTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
2526056 AAATTTTAAAAAA-TCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
2526120 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2526185 GCATCGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTGATCTATCCACGGCT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCT
* ** * *
2526249 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCTACCCGCCCGCTCATTTCGTCAGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
2526314 T-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTAGACTGAGGGTTACGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
* * * * ** * * * *
2526378 CATCGGCAGCACGCAGAGGGGAACCCCACCGATCTTCGGATTGTGCATTCCGCCCCTCTGGCCGA
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
2526443 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
2526506 G-AT-C-G-G---A----C---C---------A---GACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2526545 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCAGGGCACCATTGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** ** * *
2526610 ACCTGAATGGTGGCATTGGGGTTCCGACGATCAGAGGGGCCGGGGGGTATGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
2526675 GATGGGTGCTGGTACTTGGCCCTTATAATGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2526740 CCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2526805 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTG-ATTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTG
* * * *
2526868 TCCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
2526933 ATTTTCAAAAATCCCCAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
2526998 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
2527063 TTGGGAATGCAAAAATATGAAGATGTACCTAAACCCACCTACC-CCCGATCTATGCACGGCTTGC
584 TT-GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
2527127 GCATCCCGTCTCTCTGACCGGCGTAGTGCTTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTT-G
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
2527191 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGTTCAAACCAGACCGAGGGTTACGGCAGCAGCAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
2527256 CGGCAGCACGCAGAGGGGGACCAGATCGATCTCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
2527321 AGGGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2527381 G-AT-C--AG---A----C---C----A--G-A-T----CGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
2527420 CTTGGGCATGTGCTCGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGAAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
2527485 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGAGGGCCGGGGTGGTGTG-GCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGC
* *
2527549 GATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2527614 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2527679 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
2527744 GCATGCCAA-AAAAATACAAGGATCACGCCTACCAAGTTTGTAGCCAAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
2527808 TTTTAAAAAATGCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
2527873 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAGAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
2527938 TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCCATCGATCCACGGCTTGCG-
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
2528002 ATCCCGTCTCTCTGGTCGGCATAGTGCCTGCCTGCCCGCCCGCCTGCCCGCTCGTTT-GTTCGGT
650 ATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCCCGCCCGCTCGTTTCG-TCGGT
* * * * *
2528066 TGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCCGTAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
* * * * ** * *
2528131 GACCGGCAACACGCAGAGAGGGACCCGGTCGATCCCCGGCTTGCATATTCTGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
2528196 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2528259 G-AT-C--AG---------A--C----------C-GGACCGAAGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2528298 CTCGGGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2528363 ACCTGATCGACGGCTTTGGGGTTCCGACGATCGGAAGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
2528428 GATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2528493 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2528558 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** **
2528623 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTCTAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * **
2528688 TTTGAAAAAATGCCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2528753 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
2528818 TGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCGATCTATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
2528883 ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCCATTCGTCGATTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
2528948 TAGGCATACGGAGTTCATTCCCAGTCTAATATCAGAAC-GGACCGAAGGTTGTGGCAACAGGATC
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
2529012 GGCAGCACACAGAGGGGGACCCGGTCGATCCCCAGG-TTGCGCATTCTGCCCCTCTGGCCGACTG
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
2529076 AGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTACGCATA
843 AGCGCCCGCACGCTCGTTTC----G-TG-----GG--T--TGA---C-TT---AG-----GCATA
2529141 CGGAGTTCATTCCCAGTCTAA
882 CGGAGTTCATTCCCAGTCTAA
* * * * * *
2529162 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAAGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
2529227 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGAGGCACCATTGTCGAAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2529292 ACCTGACCAACGGCATTGGGGTTCTGACGATCGGAGGGG-CTGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
2529356 GATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCGTATCCCTCATCAAACCTCGAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2529421 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2529486 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *** *
2529551 GCATCCCAACAAAAATACAAGGATCACGCCTACCAAGTTTATAGCCAAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
2529616 TTTTAAAAAATGCCGAATCGTAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2529681 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * *
2529746 TGGCACATAGAAATATGAAGATGTGCCTAAA-CAACCTACCACCCCTATCGATCCA-GCGCTTAC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG-GCTTGC
* * * * * *
2529809 GCAT-CCGTCTCTCTGGTCGGCGTAGTGCCTGCCAGCCCGTCCCACCCGTTCGTTTCATCGGTTG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
2529873 GCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAAGACCAGA-CAAGGGTTGCGGCAGTAAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTAGACCGAGGGTTGCGGCAGCAGG
* * * *
2529937 ATCTGCAGCAGGCAGAGGGGGACCCGATCGATCCCC-GCTTGCGCATTCTG-CCCTCTGGCC-G-
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
2529998 TGAGCACCCACACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-CA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2530059 GCATACGGAGTTCATTCCTAGTCTAAGATT-CAC-GGACCGAAGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2530122 CTC-GGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
2530186 ACCTGACCGACGACTTTGGGGTTTCGACGATCGGAAGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
2530251 GATGTGTGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2530316 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
2530381 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
2530446 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTT-CTAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * **
2530510 ATTTGAAAAATGCCGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2530575 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
2530640 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCGATCTATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
2530705 ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCCATTCGTCGATTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * * *
2530770 TAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAAGGTTGTGGCAACAGGATCA
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
2530835 GCAGCACACAGAGGGGGACCCGGTCGATCCCCAGG-TTGGGCAT-TCGCCCCTCTGGCCGACTGA
780 GCAGCACGCAGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
2530898 GTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2530957 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTTGACCAAAGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
2531022 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGCCGAAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
2531087 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGAGGGG-CTGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
2531151 GATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCGTATCCCTCATCAAACCTTGAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2531216 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2531281 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
2531346 GCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGTAGCCAAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
2531411 TTTTAAAAAATGCCGAATCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2531476 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * *
2531541 TGGCACATAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
2531606 ATCCCGTCTCTCTGGTCGGTGTAGTGCCTGCCAGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * * * *
2531671 TAGGCATATAGAGTTTATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGTAAGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
2531736 GCAGCATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATTCTGCCCCTCTGGCCGGCTGAG
780 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
2531801 CGCCCACACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTCA
845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2531859 GCATACGGAGTTCATTGCTAGTCTAAGATTCG-ACCGGACCGAAGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATT-GAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
2531923 GCTCGGGCATCTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGA
* *
2531987 GAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGCGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGT
* *
2532052 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2532117 CACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
2532182 TAGGGACACGTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * *
2532247 TGTGCATGTCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
2532312 AAATTTTAAAAAATGT-CGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAAT-TCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2532376 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
2532441 GCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2532506 ACGCATCCCGTCTCTCTAGCCGGCATAGT--------GCCCGCCCGCCCGCTC-ATT--TC-GTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
2532559 GG-TT--G--T----AG--------CAGTCTAAGATCGGAC-CGAACTGAGGGTTGTGGCAGCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTTGCGGCAGCAG
* * * * *
2532606 GATCGGTAGCACGAAGAGGGGGACCCGATCGATACCCGGCTTGCACATCCCACCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
2532671 CTGAGGGCCCG-TCGCTCGTTTCGTGTGTTGACTTAGGCATACTGAGTTCATTTCTAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * **
2532733 GCATACGAAGTGT-ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACGTAGAGG
1 GCATACGGAGT-TCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACAT-G-CT
* ** ** * **** * * * * *
2532797 GGGACCCGATCGAT-CCCTGGCTTG-CGTATCCCAC-CCCTCTGGCCGGCTGA-GAGC-CCGCAC
63 GGG-CTCGGGC-ATGTGCTGG--TGCCGCATTTTTCTTCGTC-GG--GGC--ACCATCGCCGGA-
** ** ** * * *** * ** **** * *
2532857 GC-TCGTTTCGTTG--GTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GGAGT
118 GCATCG--TCGGAGAACCTGACCGACGGCAT-TGGGGTTC-CGACGA-TC-GGGGGGCCGGGGGG
* * * * * ** * *** * ** * ** *
2532917 TCATTCCCAGTCTAAGAT-TG-GATCGGATCGAGGGTTGCGACAGCACGCAGAGGGGGACCCAAT
177 T-GTGCGCA--C-ATGATGTGCGAT-GGGT-GCTGG-TAC-TTGGCCCTTATA-TTGG-CCC--C
* * * * *** ** ** * * **** * *
2532980 CGATCCCCGGCTTACGCAACC-CG-CCTCTCTGACCGAC-T-GAGCGC-CCACACGCTTGTTTCA
230 CTAT-CCC-TCAT-C-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-GATT-TTACA
* * * * ** * * * * ** * *
2533040 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-GCTATGCATACGCAGTTCA-TTCCCAGTCT
289 -GGTTTG-C-T--GC-CA-GTAG-CCATT-AAAGTG-TCTG-AAATG-GGGACACTT----TTTT
* * * *** * * * *** * *
2533103 GATATCGGAC-CAGACCGAGGGTTGCAACAGCACATGCTGGGCTTGGGCATTTGCTGGTACCATA
338 CAAAT-GGTCACA-A---AATCTTG---TA-CAC-TTC-GAG-TT-TTTAG---CT-G-A--ATT
* * * ** * * * *
2533167 TTTTTCTTCATCGGC-AC-ACCATCACCGGAGCATCGACAGAGAACCTGACCAGCGGTATTGGCA
383 TTTTTGTGCAT-GCCAACAAAAAT-A-C-AAGGATC-AC---G--TCT-ACCA--AGT-TTGG--
** ** *** ***** * **** * *** * *** * *** *
2533230 TTCCGACGA-TCGGAGGGGCCGAGGGGGGTGTGCGCACA-T-C-ATGTGTGATGGGTGCTGGTAC
432 GGCC-AAAACTC----CTTCCGA-AAAAATTTTAAAAAATTCCGAACCGTAAAAAGT-TTCAAAA
* * * * * * * * * *** ***
2533291 TTGGCCCT-TATATTAGCCCCATATC-ATTCATCAAACC-TCGAGAAC-TCAC---ACCCCCTTA
490 AT---CGTGAAAAATAG----AAAACGAGTCGTCTTGCCAT-GA-AACTTCACGTGA-AGGCTTA
* * * * * * * * ** **
2533349 A-AGAGCATTTGAAATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTG--TCTGAAATGGGGA
545 AGGGACCA-TTG---TATGA-A--TTTACAAGCCA-TA---A-AAATG-GCAT-TGGCATGCAGA
* * * * ** * *** * ** *
2533410 CACTTTTTTCAA-ATG-GTC-AAA-AAATCTTGTACACT-TCGAGTTTTTA-GTTGAATTTTTTT
596 -A---ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA---TCCACG--G------CTT
* * ***** * * ** **** ** ***
2533469 GTGCTTGCCAACAAAAATACAAGGATCACGGCAATCAAGTTTGCGGGCAAAAATCCTTCCGAAAA
646 GCGCAT-CC--CGTCTCT-C-TGG--C-CGGC-GT--AG--TGCCCGC--CCGCCCGCCCG-CCC
** * **** ** * * * ** ** **** * **
2533534 AAT--TTTAAAAAATGTCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAATGAGTC-
695 GCTCGTTT------CGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGT--CTAA-GA-TCA
* * * * *** * * *
2533595 GTCTTG-CCATGAAACGTCGTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATC-CATAAA
749 GACTAGACC--G--A-G-GGT-TG-CGGCAGCA-GG---ATCG---GCA---GC-A-CGC----A
* * ** * **** * * ** ** **
2533658 AATGGCATTGGCACATAGAAATATGA-AGATGTGCCTTAAC-CAACCTACCACC-CT-ATCGATT
790 GA-GG----GGGAC-CCG--AT-CGATCCCCG-G-CTT-GCGCATCCCGCC-CCTCTGGCCGGCT
* ** * * ** * * * ***** * **
2533719 CA-CGGCTTGCACATCCCGTCTCTC-T-GGCCGACGTAGTGCCTGCCCGCCCCGCACTGCCGCTT
842 GAGC-GCCCGCAC-GCTCGT-T-TCGTGGGTTGACTTAG-GCAT--ACGGAGTTCA-TTCC-CAG
*
2533781 TCATCGGTTGGCTTAG
898 TC-----------TAA
** * * * * * ** *
2533797 GCATACGGAGTTCA-TCCCAAACTAAGATCAGACCAGG-CAGGTTGGGCAGGATCGACAGCACA-
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGAC-CG-AGGG-TTG--CGGCAGCACAT
* * ** * * * * * * ** * *
2533859 G-AGGGGT-GACCCGATCGATCCCCGCTTACGGCATCTACCCTC-T-GGCCGGCTA--AGCGCCA
60 GCTGGGCTCG-GGC-AT-G-T-GCTG-GTGCCGCATTTTTCTTCGTCGG--GGC-ACCATCGCC-
* * * * * ** *** ** *
2533918 GCACGC-TCTTTTCATGG-GTTTACTTAGGCATACGAGTTCATTCCCAGTCTATAGATCACATTC
115 GGA-GCATC--GTC--GGAG--AACCT-GACCGACG-G--CATT-GGGGT-T-CCGA-C-GA-TC
* * * * * * * * * ** * *
2533981 ---GGACCAGAGGTTCG-GCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGC--CGCATTTTTC
163 GGGGGGCCGGGGGGT-GTGC-GCACATGATGTG--CGATG--GGTGCTGGTACTTGGCCCTTATA
* * * ** * * * * ** * * * *
2534039 TTCGGGCACC-ATCGCTCGGCGCATCATCGAG---TCGAGACCGAGC-T--CGGGCA-TTGGGCT
222 TT-GGCCCCCTATCCCTCATC-AAACCTCGAGAACTC-ACACC-CCCTTAAAGAGCATTTGAGAT
* * ** * * * **** **** ****
2534096 GTTTGCGCACATGATGTGTGATATGCTGGT-GCCCTTATATTGGTCCCTTAT-CCCTCATCAAAC
283 -TTT----ACA-G--GTTTG--CTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGACA-CTTTT
* * *** ** * * * ** ** *
2534159 CTCAAGAT-CTCACACCCTCTTAAAGAGCATTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGC
336 TTCAA-ATGGTCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GC
** * * * * ** * * *
2534219 C-ATTAAAGTGTCTTGAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA-TCTTGTACACTG
396 CAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT-T-C-C-G
** ** *** ***** ** * **** * **
2534278 -CGAGTTTTTAGTTGAATT--TTTTTGTGCATACCAACAAAAA---T--ACAAT-GAGCACGTCT
449 AAAAAATTTTA-AAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG---
* * * * *** ** *** ** **
2534334 ACCTAGT-TTGGGGC-TAAAACTCCTTCCAAAAGAA-TTTTAAAAAATCTCGAACCGTAAAAAGT
510 A-GTCGTCTT--GCCATGAAA---CTT-CACGTGAAGGCTTAAGGGA-C-C--ATTGTATGAA-T
* ** * * * * * *
2534396 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TCGCCATGAAACTTCATG-TGAAG-GCTTA
563 TT-ACAAGCCAT-AAAAAT-G---GC-A-TTGGCAT-G-CA-GAAA--T-ATGAAGATGTGCCTA
* ** ** *** * * * * *** *** * **
2534458 AAGGACCATTGTATGAATTTA-CAAGCCTTAAAAATGGCATTG-GCGTGTAG-AAATATGAAGAT
614 AA--CCCA-CCTACCACCCTATCGATCC------ACGGC-TTGCGCATCCCGTCTCTCTG--GCC
* ** * ** * ** ** *
2534520 GTGCCTA-AACCCACCTACCAC-CCTATCGATCCACGGTTTGCGCATCCCGTCTTTCTGGC--CG
667 G-GCGTAGTGCCCGCCCGCC-CGCC---CG--CC-C-G-CT-CG--TTTCGTCGGT-TGGCTTAG
* ** * * * * * * * **
2534581 GCATA-GTGCCCGCCCGCTCGCCCACCCGTTTGTTTCATCGGTC-GGCTTAGGCATACGGAGTT-
718 GCATACG-G--AGTTC-AT-TCCCA-------GTCT-A-AGATCAGAC-TAGACCGA-GG-GTTG
** * * ** ***
2534643 CATTCCCAGTCTAAGATCAGACCAG-AC-C-GAGGGTTGCGGCAGCAGGATCGCAGCATGCATAG
766 C---GGCAG-C-AGGATC-G-GCAGCACGCAGA-GG--G-GG-A-CCCGAT--C-G-AT-C-CCC
** * * ** * * * **
2534705 GGACCAG-GCCATCCTCGGCTTGCGCATC-CGCCTTCTG-GCCGACTG-AGCGCACCG-CACGCT
812 GG-CTTGCG-CATCC-C-GC---C-CCTCTGGCCGGCTGAG-CGCCCGCA-CGC-TCGTTTCG--
** * *** * * *
2534765 TGTTTCGTGAGTT-GATTTA-GGGGATACGGAGTTTCATTCCCCAGTCCTAA
864 TGGGT--TGACTTAGGCATACGGAG-TTC-A-------TT-CCCAGT-CTAA
* * * * * *
2534815 GCATATGGAGTTCATTCCCAGTCTAAGTTTGATC-GGACCAATTCGGTTGC-GCAGCACATGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGA--GGGTTGCGGCAGCACATGCTG
** * *
2534878 GGCTCAAGCATGTGCTGGTGTCGCATTTTTC-T--T----------T-GCCGGAGCATCGTCGGT
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGA
* ** *
2534929 GAACCTGACTGACGGCATTGGGGTTCCGGTGATCGAGGGGGTC-GGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
2534993 GAGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2535058 TACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 CACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2535123 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGGCTGAATGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTT
* * * **
2535187 TTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCAAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
2535252 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
2535317 CTTGCCATGAAACTTCATGTGAAGGCTTCAA-GGACCATTGTATGAATTTAGAAGCCATAAAAAT
516 CTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2535381 GGCATTGGCATGCAGAAATATGAGGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
2535446 TGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGTCCGCCTGCTCGTTTCGTTGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
2535507 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCTGAGGGTTGCGACAGCAA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
* * ** * * *
2535572 GATCGGCAGCACGCATAGGGGGACCCGACCGATCCCCTACTTACGCGTCTCGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
2535637 CTGAGCGCCAGCACGCTCTTTTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
2535700 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
2535765 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAAGCATCACTGGAGAACCTGACTGGTCGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T--CG--CCGGA---G-C-A
* * * * * * * ** * *
2535830 TCCTCGGCTTGCGCATCC-G-CC-CCTGGCCGACTGAGGG-CCCGCACGCTCGTTTCATGGGTCA
121 TCGTC-G---GAG-AACCTGACCGAC-GG-C-ATTG-GGGTTCCG-ACGATCG----GGGGGCCG
* * * * * *
2535891 GGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATAATGGCCTCCTATCCT
172 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2535956 TCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
237 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
2536021 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGATCA-AACAATCTTGTACACTTT
302 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA-AATCTTGTACACTTC
* * *
2536085 GAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATACAATGATAACGTCTACCAAGTTTG
366 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
2536150 GGGCCAATACTCCTTTCGAAAAAATTTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCAT
431 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGT
* *
2536214 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTATATG
495 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
2536279 AATTTACAAACCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAC
560 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
2536344 CACCCTATTGATCCACGGCTTGCGCATCCC-TC-CTCT--ACGGTCGGTA-T---AG--TGCCCA
625 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-C-GTAGTGCCCGCCCGCCCG
* * * *
2536399 CCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGAT-TG-CA
688 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-
* * * * *
2536462 TCAGACTGAGGGTTGCGCCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCTGGGT
752 T-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* ** * * *
2536527 TGCGTATCCC-CCCCTCTGGTAGGCTGAGTGCCCGCACTCTCGTTTCGTGGGTTGACTTAAGCAT
816 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
2536591 ACCGAGTTCATTCCCAGTCTAA
881 ACGGAGTTCATTCCCAGTCTAA
* * * * *
2536613 GCATATGGAGTTCATTCCCAGTCCATGATTGGA-TCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * * *
2536677 GCTTAGGCATGTGCTGGTGCAGCATTTATCTTCATCGGGGCACCACCGTCGGAGCATCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * ** * ** * *
2536742 AACCTTATCGGCAGCATTACGGTTTCGATAATC----GG--GGGGTGTGCGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
2536801 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2536866 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2536930 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2536995 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
2537060 TTTTAAAAAA-TCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 TTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
2537124 GCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGC
519 GCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2537188 ATTGGCATGCAAAAATTTGAAGATGTGCCTAAACCCACCTAGCACCCTATTGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
2537253 GCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTCCGTTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** ** * *
2537318 CTTACGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
** ** * * * * *
2537383 CGAAAGCACATAGACGGGGACCCGACCGATCCCAGGCTGGCGCATCCCGCCCCTCTGGCCGGTTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
2537448 AGTGCCCGCACACTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTAATTCCCAGTCGAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2537508 CCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGCTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2537573 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** *
2537638 ACCTGATCGGTGGCATTGGGGTT-CTAGCGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
2537702 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
2537767 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2537832 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
2537897 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAAATCATGT-CGAAAG
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAA
*
2537960 AATTTTAAAAAA-TCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATTCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
2538024 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
2538089 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTA
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
2538154 CGCATCCCGTCTCTCTGGCCAACGT--T----G--TGCCCGCTCGCCCGCTCGTTTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** *
2538211 GCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATTAGA-TCAAAATGAGGGTTGTGGCAGCAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAGG
* * * * * * * * *
2538275 ATTGACAGTACGCAAAGGGGGACCCG-GCTGATCCTCGGCTTGTGCATCCCACCCCTCTGGCTGG
776 ATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
2538339 CTGAGCTCCCGCACGCTCGTTTCGT-GGATGACTTAGGCATACGGAGTTCATTCCCAATCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * ** *
2538401 GCATATAGAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
2538466 CTCGGGCATGTGCTGGTGCCGTAATTTTCTTC-ACTAGGGCACCATCGTTGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * **
2538530 AACCTGACCTG-CGACA-TGTGGTTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
130 AACCTGACC-GACGGCATTG-GGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT
* * *
2538593 GTACGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
2538658 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGTTGCCAGTAGCCATTAAAGTCTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
2538723 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTGAACTAAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
2538787 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG-A
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
2538851 AAAATTTTAAAAAA-TCTCGAACCGTAAAAGGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCG
451 AAAATTTTAAAAAATTC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
**
2538914 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * ** *
2538979 GGCATTGGCACGTAGAAATATGAAGATGTGCC-AAAATCACCTACCACCCTATCGATCCACAGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
2539043 TACGAATCCCGTCTCTCTAGG-CGGAATAGTGCCCGCCCGTCCGTCCGCCCGCCCGCTCCTTTCG
645 TGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCCCGCTCGTTTCG
* * *
2539107 TCGGTTGGCTTACGCATAC-G-GTTCATTCCTAGTCTAAGATCAGACCAGACC-AGGGGTTGCGG
705 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA-GGGTTGCGG
** * * **
2539169 CAGCAGGATCGATAGCACACAGAGGGGGA-CTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
769 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
**
2539233 GGCCGGCTGAGCGCCCATACGCTCGTTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCCCAG
834 GGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
2539297 TTTAA
898 TCTAA
* * * ** * **
2539302 GCACACAGAGTTCATTCCCAGTCTAAGA-TCAGACCCGACCGAGGGTTACGGTGGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * ** *
2539366 GCTCGAGCTTGTCCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCTGAGCATCACCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGA
*
2539430 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * * *
2539495 GCGATGTGTGCTGG-AGCTTTGCCCTTATTTTGGGCCCCTATCCCTCATGAAACCTTGAGAACTC
193 GCGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
2539559 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2539624 ATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGTGTTTTTAGCTG-ATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* *
2539688 TTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
2539753 AAAATTTTAAAAAATGCCGAACCGTAAAAAGTTTTGAGACTCGTGAAAAATAGAAAACGAGTTGT
451 AAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
2539818 CTTGCCATGAAACTTCATGTGAAGTCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
2539883 GCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATAGATCCACGATTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2539948 GCGCATCCCGTCTCTCTGGCTGACGTAGT--------GCCCGCCCGCCCGCTCG-TTCTGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTC-GTCGGT
* * ** *
2540004 TGGCTTGGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAG
* * * * * * * * * *
2540069 GATCGGCTGCATGTAGAGGGGGACCCGGTTGATCCCTGGCTCGTGCATCCCGCTCCTCTGGTCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
2540134 CTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2540197 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2540262 CTCGGGCATGTGCTTGTGTCGCATTTTTAC-ACG-CTAGGGCACCATCGTCGGAGCATCG-CTGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTC-GGGGCACCATCGCCGGAGCATCGTC-GG
* * *** *
2540324 AGAACCTGATCGACGGCATTGGGGTTTCGGTTATCGGGGGGGCCGGGGGGTGTACGCACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
2540389 TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCTCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
2540454 ACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2540519 ATGG
322 ATGG
2540523 CCCGTGTAGT
Statistics
Matches: 20681, Mismatches: 3118, Indels: 1916
0.80 0.12 0.07
Matches are distributed among these distances:
872 1 0.00
873 383 0.02
874 545 0.03
875 854 0.04
876 150 0.01
877 494 0.02
878 398 0.02
879 231 0.01
880 292 0.01
881 210 0.01
882 302 0.01
883 9 0.00
884 12 0.00
885 82 0.00
886 427 0.02
887 166 0.01
888 591 0.03
889 104 0.01
890 421 0.02
891 816 0.04
892 974 0.05
893 1011 0.05
894 934 0.05
895 922 0.04
896 45 0.00
897 95 0.00
898 94 0.00
899 966 0.05
900 635 0.03
901 1579 0.08
902 1648 0.08
903 1314 0.06
904 568 0.03
905 236 0.01
906 140 0.01
907 266 0.01
908 5 0.00
909 5 0.00
910 11 0.00
911 2 0.00
912 7 0.00
913 167 0.01
914 136 0.01
915 19 0.00
916 13 0.00
917 12 0.00
918 343 0.02
919 103 0.00
920 4 0.00
921 10 0.00
922 4 0.00
923 7 0.00
924 32 0.00
925 4 0.00
926 15 0.00
927 55 0.00
928 542 0.03
929 120 0.01
930 5 0.00
931 1 0.00
932 8 0.00
933 9 0.00
934 7 0.00
935 5 0.00
936 5 0.00
937 1 0.00
938 4 0.00
939 4 0.00
940 6 0.00
941 7 0.00
942 3 0.00
943 15 0.00
944 14 0.00
945 1 0.00
946 13 0.00
947 13 0.00
948 6 0.00
949 11 0.00
950 9 0.00
953 6 0.00
954 20 0.00
955 15 0.00
956 8 0.00
957 9 0.00
958 8 0.00
959 2 0.00
960 4 0.00
961 2 0.00
962 1 0.00
963 5 0.00
964 2 0.00
965 1 0.00
966 8 0.00
967 7 0.00
968 4 0.00
969 6 0.00
970 1 0.00
971 5 0.00
972 14 0.00
973 19 0.00
974 14 0.00
975 16 0.00
976 18 0.00
977 8 0.00
978 30 0.00
979 25 0.00
980 11 0.00
981 9 0.00
982 17 0.00
983 20 0.00
984 16 0.00
985 9 0.00
986 15 0.00
987 6 0.00
988 9 0.00
990 1 0.00
991 5 0.00
992 3 0.00
993 2 0.00
994 3 0.00
995 3 0.00
996 2 0.00
997 4 0.00
998 3 0.00
999 1 0.00
1000 1 0.00
1004 1 0.00
1009 1 0.00
1010 1 0.00
1011 12 0.00
1012 5 0.00
1013 7 0.00
1014 15 0.00
1015 11 0.00
1016 16 0.00
1017 7 0.00
1018 31 0.00
1019 21 0.00
1020 8 0.00
1021 13 0.00
1022 24 0.00
1023 14 0.00
1024 183 0.01
1025 225 0.01
1026 170 0.01
1027 148 0.01
1028 130 0.01
1029 111 0.01
1030 201 0.01
1031 158 0.01
1032 168 0.01
1033 117 0.01
1034 117 0.01
1035 110 0.01
1036 126 0.01
1037 106 0.01
1038 146 0.01
1039 140 0.01
1040 598 0.03
1041 197 0.01
1042 121 0.01
1043 96 0.00
1044 66 0.00
1045 76 0.00
1046 87 0.00
1047 107 0.01
1048 642 0.03
1049 286 0.01
1050 76 0.00
1051 84 0.00
1052 104 0.01
1053 179 0.01
1054 173 0.01
1055 115 0.01
1056 128 0.01
1057 64 0.00
1058 131 0.01
1059 50 0.00
1060 72 0.00
1061 125 0.01
1062 254 0.01
1063 157 0.01
1064 95 0.00
1065 74 0.00
1066 52 0.00
1067 78 0.00
1068 74 0.00
1069 110 0.01
1070 46 0.00
1071 31 0.00
1072 43 0.00
1073 36 0.00
1074 29 0.00
1075 77 0.00
1076 112 0.01
1077 67 0.00
1078 66 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2525613 original size:26 final size:26
Alignment explanation
Indices: 2525577--2525629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2525567 GTTGACTTAG
2525577 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2525603 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2525629 G
1 G
2525630 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2529140 original size:26 final size:26
Alignment explanation
Indices: 2529110--2529188 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2529100 GTTGACTTAG
* *
2529110 GCATACGGAGTTCATTCGCAGTCTAC
1 GCATACGGAGTTCATTCCCAGTCTAA
2529136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2529162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2529188 G
1 G
2529189 ATCGGACTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2530068 original size:25 final size:25
Alignment explanation
Indices: 2530034--2530081 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
2530024 GTTGACTTAG
2530034 GCATACGGAGTTCATTCCCAGTCCA
1 GCATACGGAGTTCATTCCCAGTCCA
*
2530059 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCCCAGTC
2530082 TAAGATTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCCA
Found at i:2530961 original size:26 final size:26
Alignment explanation
Indices: 2530931--2530983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2530921 GTTGACTTAG
*
2530931 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2530957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2530983 G
1 G
2530984 ATCGGACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2532916 original size:26 final size:26
Alignment explanation
Indices: 2532880--2532932 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2532870 GTTGACTTAG
2532880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2532906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2532932 G
1 G
2532933 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2533135 original size:173 final size:172
Alignment explanation
Indices: 2532613--2533135 Score: 670
Period size: 173 Copynumber: 3.0 Consensus size: 172
2532603 CAGGATCGGT
* * *
2532613 AGCACGAAGAGGGGGACCCGATCGATACCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGAGGG
1 AGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
** * * * *
2532678 CCCGTCGCTCGTTTCGTGTGTTGACTTAGGCATACTGAGTTCATTTCTAGTCTAAGCATACGAAG
66 CCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* **
2532743 TGT-ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGT
131 T-TCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGAC
* * *
2532785 AGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGAG
1 AGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
* *
2532850 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
66 CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* *
2532915 GTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGAC
130 GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGAC
* * * * * * * * *
2532958 AGCACGCAGAGGGGGACCCAATCGATCCCCGGCTTACGCAACCCGCCTCTCTGACCGACTGAGCG
1 AGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
* * * * *
2533023 CCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTATGCATACGCA
66 CCC-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * *
2533088 GTTCATTCCCAGTCTGATATCGGACCAGACCGAGGGTTGCAAC
130 GTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGAC
2533131 AGCAC
1 AGCAC
2533136 ATGCTGGGCT
Statistics
Matches: 305, Mismatches: 44, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
172 63 0.21
173 242 0.79
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (172 bp):
AGCACGAAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
CCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
TTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGAC
Found at i:2536623 original size:26 final size:26
Alignment explanation
Indices: 2536584--2536635 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2536574 TGGGTTGACT
2536584 TAAGCATACCGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
**
2536610 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
2536636 CATGATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:2538673 original size:894 final size:892
Alignment explanation
Indices: 2534126--2540522 Score: 7637
Period size: 895 Copynumber: 7.1 Consensus size: 892
2534116 ATATGCTGGT
* * * * *
2534126 GCCCTTATATTGGTCCCTTATCCCTCATCAAACCTCAAGATCTCACACCCTCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
2534191 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAA
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAA
* * *
2534255 TGGTCACAAAATCTTGTACACTGCGAGTTTTTAGTTGAATTTTTTTGTGCATACCAACAAAAATA
130 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
2534320 CAATGAGCACGTCTACCTAGTTTGGGGCTAAAACTCCTTCCAAAAGAATTTTAAAAAATCTCGAA
195 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAA-AATTTTAAAAAATCTCGAA
* *
2534385 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCATGTG
259 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * ***
2534450 AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCGTGTAGAAATATG
324 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
* *
2534515 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTTTCTGGCC
389 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * *
2534580 GGCATAGTGCCCGCCCGCTCGCCCACCCGTTTGTTTCATCGGTCGGCTTAGGCATACGGAGTTCA
454 GACGT--TG--TGCCCGCTCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
2534645 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG-CAGCATGCATA--GGG
511 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * *
2534707 ACCAGGCC-ATCCTCGGCTTGCGCAT-CCG-CCTTCTGGCCGACTGAGCGCACCGCACGCTTGTT
576 ACCCGGCCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTT
* *
2534769 TCGTGAGTTGATTTAGGGGATACGGAGTTTCATTCCCCAGTCCTAAGCATATGGAGTTCATTCCC
639 TCGTG-GTTGACTTA-GGCATACGGAG-TTCATT-CCCAGT-CTAAGCATATGGAGTTCATTCCC
** * * * * **
2534834 AGTCTAAG-TTTGATCGGACCAATTCGGTTGC-GCAGCACATGTTGGGCTCAAGCATGTGCTGGT
699 AGTCTAAGATCGGACCGGACCGA--GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
2534897 GTCGCATTTTTCTT---T---G------C--CGGAGCATCGTCGGTGAACCTGACTGACGGCATT
762 GCCGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATT
* * * * *
2534948 GGGGTTCCGGTGATCGAGGGGGTC-GGGGGTGTGCGCACATGATGTGAGATGAGTGCTGGTACTT
827 GGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
2535012 G
892 G
* *
2535013 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCATACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TT
2535078 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
65 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
2535143 TGGTCACAAAATCTTGTACACTTCGAG-TTTTAGGCTGAATGTTTTTGTACATGCCAACAAAAAT
130 TGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
2535207 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCAAAAAAAATTTTAAAAAATCCCGA
194 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCGA
* *
2535272 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGT
258 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ***
2535337 GAAGGCTTCAA-GGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATA
323 GAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
* * * *
2535401 TGAGGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGG
387 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
2535466 CCGGCGTAGTGCCCGCCCGTCCGCCTGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
452 CCGACGTTGTGCCCG--C-T-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
2535531 CCCAGTCTAAGATCGGACCAGGCTGAGGGTTGCGACAGCAAGATCGGCAGCACGCATAGGGGGAC
513 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* ** * * * * * *
2535596 CCGACCGATCCCCTACTTACGCGTCTCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCTTTTCA
578 CCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
2535661 TGGGCTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAA
642 T-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * *
2535726 GATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTT
706 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * ** * * *
2535791 TTCTTCGTCGAAGCATCACTGGAGAACCTGACTGGTC-GATCCTCGGCTTGCGCATCC-GCCCCT
771 TTC-T--TC--A-C-T-A--GG-GCACC--A-TCGTCGGAGCATC-GCCGGAG-AACCTG-ACC-
* * ** ** * *** * * * *
2535854 GGCCG-ACTGAGGG-CCCGCACGCTCGTTTCATGGGTCAGGGGGTGTACGCACATGATGTGTGAT
818 GGCGGCATTG-GGGTTTCG-GTGATCG---GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
2535917 GGGTGCTGGTACTTG
878 GGGTGCTGGTACTTG
* * * * *
2535932 GCTCTTATAATGGCCTCCTATCCTTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
2535997 GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAAT
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2536062 GATCA-AACAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATA
131 GGTCACAA-AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
2536126 CAATGATAACGTCTACCAAGTTTGGGGCCAATACTCCTTTCGAAAAAATTTTAAAAAATCTCGAA
195 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAA
*
2536191 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTG
259 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
2536256 AAGGCTTAAGGGACCATTATATGAATTTACAAACCATAAAAATGGCATTGGCACACAAAAATATG
324 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
*
2536321 AAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCC-TC-CTCTACGG
389 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT--GG
* * * * *
2536384 TCG--GTATAGTGCCCACCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
452 CCGACGT-T-GTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
2536447 CATTCTAAGAT-TGCATCAGACTGAGGGTTGCGCCAGCAGGATCGGCAGCACGCAAAGGGGGACC
515 CAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
** * * ** * *
2536511 CGATCGATCCCTGGGTTGCGTATCCC-CCCCTCTGGTAGGCTGAGTGCCCGCACTCTCGTTTCGT
579 CGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
2536575 GGGTTGACTTAAGCATACCGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCCATG
643 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
* * * ** * *
2536640 ATTGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTTAGGCATGTGCTGGTGCAGCATTTA
707 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * * * **
2536705 TCTTCA-TCGGGGCACCACCGTCGGAGCATCGTCGAAGAACCTTATCGGCAGCATTACGGTTTCG
772 TCTTCACT-AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCG
* * * * *
2536769 ATAATC-----GG--GGGGTGTGCGCGCACATGATGTGCAATGGGTGCTGGTACTTG
836 GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2536819 GCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
2536883 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2536948 GATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATAC
131 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
2537013 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAAC
196 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCTCGAAC
* * ** * * *
2537078 TGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATTAAAACTTCACGTG
260 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTG
*
2537143 AAGGCTTAAGGGACCATTGTATGAATTTACAA-CCATAAAAATGGCATTGGCATGCA-A-AAATT
324 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATA
* * *
2537205 TGAAGATGTGCCTAAACCCACCTAGCACCCTATTGATCCACGGCTTGCGCATCCCGTCTTTCTGG
387 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
2537270 CCGACGTAGTGCCCGCCTGCCCGCCCGTCCGTTCATTTCGTCGGTTGGCTTACGCATACGGAGTT
452 CCGACGTTGTGCCCG-CT---CGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * * ** *
2537335 CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATCGAAAGCACATAGACGG
509 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * *
2537400 GGACCCGACCGATCCCAGGCTGGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGT
574 GGACCCGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * * *
2537465 TTCGTGAGTTGACTTAGGCATACGGAGTTAATTCCCAGTCGAACCATACGGAGTTCATTCCCAAT
638 TTCGTG-GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
** * * *
2537530 CTAAGATCGGACTAGACCGAGGGCTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGC
702 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
2537595 ATTTTTCTTC-GTCGAGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGGTGGCATTGGGG
767 ATTTTTCTTCACTAG-GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
2537659 -TTCTAGCGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTG
831 TTTC-GGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
2537721 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
**
2537786 GAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
2537851 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATAC
131 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** * * *
2537915 AAGGATCACGTCTACCAAGTTCAGGGCCAAAAATCATGTCGAAAGAATTTTAAAAAATC-CTGAA
196 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCTC-GAA
2537979 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
259 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
2538044 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
324 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
* *
2538109 AAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTACGCATCCCGTCTCTCTGGCC
389 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
2538174 AACGTTGTGCCCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTTATTCCCAGT
454 GACGTTGTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * *
2538239 CTAAGATTAGATCAAAATGAGGGTTGTGGCAGCAGGATTGACAGTACGCAAAGGGGGACCCGGCT
519 CTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCC
* * * * *
2538304 GATCCTCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAGCTCCCGCACGCTCGTTTCGTGGATG
584 GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTG
* * *
2538369 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATAGAGTTCATTGCCAGTCTAAGATCGGA
648 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
* ** * * *
2538434 CCGGACCGAGGGTTACGGCAGCACATATTGGTCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCA
713 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * *
2538499 CTAGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCTGCGACA-TGTGGTTTTCGGTGATC
778 CTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG-GGGTTTCGGTGATC
*
2538563 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTG
842 GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
2538615 GCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2538680 GAGATTTTACAGCTTTGTTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACATTTTTTTCAAAT
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2538745 GGTCACAAAATCTTGTACACTTCGAG-TTTGAACTAAATTTTTTTGTGCATGCCAACAAAAATAC
131 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
*
2538809 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG-AAAAATTTTAAAAAATCTCGAAC
196 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAAC
* ** * *
2538873 CGTAAAAGGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
260 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** *
2538937 AGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACGTAGAAATATGA
325 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
** * * * *
2539002 AGATGTGCC-AAAATCACCTACCACCCTATCGATCCACAGCTTACGAATCCCGTCTCTCTAGGCG
390 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCC
* * * *
2539066 GA-ATAGTGCCCGCCCGTCCGTCCGCCCGCCCGCTCCTTTCGTCGGTTGGCTTACGCATAC-G-G
454 GACGT--TG--TGCCCG--C-T-----CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
2539128 TTCATTCCTAGTCTAAGATCAGACCAGAC-CAGGGGTTGCGGCAGCAGGATCGATAGCACACAGA
507 TTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* **
2539192 GGGGGA-CTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCATACGCT
571 GGGGGACCCGGCCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * **
2539256 CGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCACACAGAGTTCATTCCC
635 CGTTTC-GTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
* * * ** * * *
2539321 AGTCTAAGATCAGACCCGACCGAGGGTTACGGTGGCACATGCTGGGCTCGAGCTTGTCCTGGTGC
699 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
2539386 CGCATTTTTCTTCGCTGGGGCACCATCGTCTGAGCATCACCAGAGAACCTGACCGGCGGCATTGG
764 CGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* ** *
2539451 GGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGG-AGCTT
829 GGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-CTT
*
2539514 T
892 G
* * * *
2539515 GCCCTTATTTTGGGCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
2539580 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
2539645 GGTCAGAAAATCTTGTACACTTTGTGTTTTTAGCTG-ATTGTTTTTGTGCATGACAACAAAAATA
131 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATA
2539709 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATGC-CGA
195 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAAT-CTCGA
** * * * * *
2539773 ACCGTAAAAAGTTTTGAGACTCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGT
258 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
2539838 GAAGTCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC-T-GAAAT
323 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAAT
* * **
2539901 ATGAAGATGTGCCTAAACCCACCTACCACGCTATAGATCCACGATTTGCGCATCCCGTCTCTCTG
386 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
2539966 GCTGACGTAGTGCCCGCCCGCCCGCTCG-TTCTGTCGGTTGGCTTGGGCATACGGAGTTCACTCC
451 GCCGACGTTGTGCCCGCTCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
2540030 CAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGCAGCAGGATCGGCTGCATGTAGAGGGGGACC
515 CAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
** * * * * * * *
2540094 CGGTTGATCCCTGGCTCGTGCATCCCGCTCCTCTGGTCGGCTGAGCGCCCACACGCTCATTTCAT
579 CGGCCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
2540159 GGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
643 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
* * * * * *
2540224 ATCGAACTGGACCGAGGGTTGCGACCGCACATGCTGGGCTCGGGCATGTGCTTGTGTCGCATTTT
707 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
2540289 TAC-ACGCTAGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGATCGACGGCATTGGGGTTTCG
772 T-CTTCACTAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCG
* *
2540353 GTTATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTG
836 GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
2540410 GCCCTTATATTAGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
1 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2540475 AAGATTTTATAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTGAAATGG
66 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
2540523 CCCGTGTAGT
Statistics
Matches: 4764, Mismatches: 593, Indels: 298
0.84 0.10 0.05
Matches are distributed among these distances:
884 88 0.02
885 79 0.02
886 348 0.07
887 204 0.04
888 385 0.08
889 32 0.01
890 25 0.01
891 49 0.01
892 145 0.03
893 233 0.05
894 547 0.11
895 561 0.12
896 11 0.00
897 10 0.00
898 16 0.00
899 6 0.00
900 262 0.05
901 342 0.07
902 339 0.07
903 275 0.06
904 43 0.01
905 3 0.00
908 1 0.00
910 2 0.00
912 6 0.00
913 156 0.03
914 121 0.03
915 10 0.00
916 7 0.00
917 6 0.00
918 351 0.07
919 101 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTTGTGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGA
TCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTA
GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
Found at i:2540201 original size:26 final size:26
Alignment explanation
Indices: 2540171--2540223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2540161 GTTGACTTAG
2540171 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2540197 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2540223 G
1 G
2540224 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2540767 original size:26 final size:26
Alignment explanation
Indices: 2540730--2540782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2540720 GTTGACTTAG
*
2540730 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGAAGTTCATTCGC-AGTCTAA
2540756 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
2540782 G
1 G
2540783 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:2542314 original size:26 final size:26
Alignment explanation
Indices: 2542277--2542329 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2542267 GTTGACTTAG
*
2542277 GCATACGTAGTTAATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
*
2542303 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
2542329 G
1 G
2542330 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTAATTCCCAGTCTAA
Found at i:2543206 original size:26 final size:26
Alignment explanation
Indices: 2543170--2543222 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2543160 GTTGACTTAG
2543170 GCATACAGAGTTCATTGCC-AGTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
2543196 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
2543222 G
1 G
2543223 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:2543603 original size:242 final size:244
Alignment explanation
Indices: 2543170--2543655 Score: 577
Period size: 242 Copynumber: 2.0 Consensus size: 244
2543160 GTTGACTTAG
* * * * **
2543170 GCATACAGAGTTCATTGCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAAACCAGAC
** * * * * **
2543235 CGAGGTTTGCGGTAGCACATGCCGGGCTCGCGCATGTGCTGGCACCATATTTTTCTTTTTCGGGG
66 CGAGCATTGCGGCAGAACATACCGGGCTCGCGCATGTGCTGGCACCATAATTTTCTTCGTCGGGG
** * * * *
2543300 TGCCATCGTCGGAGCATCGCAGGAGAACCTGACCGGTGGGATTGGGGTTTCGACCATCAGGGGGG
131 CACCATCGTCAGAGCATCGCAGGAGAACCTGACCGATGGCATTGGGGTTCCGACCATCAGGGGGG
*
2543365 -CCGGG-GGTGTGCACACATGTTATGCGATGGGTGCTGGTACTTGGCCC
196 TCCGGGCGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
* * *
2543412 GCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGATCATTCCCAATCTAAGATCAAACTAGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAAACCAGAC
* *** *
2543477 CGAGCATTGCGGCAGAACATACTGGGCTCAG-GCATGTGCTGGTGTCGTAATTTTCTTCGTCGGG
66 CGAGCATTGCGGCAGAACATACCGGGCTC-GCGCATGTGCTGGCACCATAATTTTCTTCGTCGGG
* * * *
2543541 GCACCATTG-CAAGAGCATTGCCA-GAGAACTTGACCGATGGCATTGGGGTTCCGACGATCAGGG
130 GCACCATCGTC-AGAGCATCG-CAGGAGAACCTGACCGATGGCATTGGGGTTCCGACCATCAGGG
* * * *
2543604 GGGTCGGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCC
193 GGGTCCGGGCGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
2543656 TTATATTGGC
Statistics
Matches: 202, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
241 1 0.00
242 156 0.77
243 7 0.03
244 38 0.19
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.24
Consensus pattern (244 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCCAATCTAAGATCAAACCAGAC
CGAGCATTGCGGCAGAACATACCGGGCTCGCGCATGTGCTGGCACCATAATTTTCTTCGTCGGGG
CACCATCGTCAGAGCATCGCAGGAGAACCTGACCGATGGCATTGGGGTTCCGACCATCAGGGGGG
TCCGGGCGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
Found at i:2545746 original size:26 final size:25
Alignment explanation
Indices: 2545710--2545788 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
2545700 GTTGACTTAG
2545710 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
2545736 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCA-TTCCAGTCTAA
*
2545762 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
2545788 G
1 G
2545789 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 44 0.88
27 4 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:2547795 original size:808 final size:804
Alignment explanation
Indices: 2546639--2548187 Score: 2292
Period size: 808 Copynumber: 1.9 Consensus size: 804
2546629 GTTGACTTAG
* * *
2546639 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGACCATGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCATGGGTTGAGGCAGCACATGCTGGG
* ** * *
2546704 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCAGAGA
66 CTCAGGCATGTGCTGCAGTCGCATTTTTCTTCCTCGGGGCACCATCGTCGAAGCATCGCCAGAGA
* * *
2546769 ACCTGACCGGCGACATTGGGGTACCGACGATCCGGGGGGCTAGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGACGACATTGGGGTACAGACGAACC---GGG--AGGGGGTGTGCACACATGATGTGC
*
2546834 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
191 AATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2546899 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
2546964 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTGCAAGTTTTTAGCTGAATTTTTTTGT
* * * *
2547029 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
386 GCATGCCAAAAAAAATACAAGGAGCACATCTACCAAGTTTGGGCCCAAAACCCCTTCCAAAAAAA
**** * * *
2547094 TTTTAAAAAATTTTGAACTAG-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
451 TTTTAAAAAATCCCAAAC-AGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2547158 GCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCATGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
2547223 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCTATAGCTTGTG
580 TTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCAACCACCCTATCGATCCACAGCTTGCG
2547288 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCTC-ATTTCATCGGTTGGCTTA
645 CATCCCGTCTCTCTGGCCGGCGTAGTG-------G-CCGCCTGCTCGA-TTCATCGGTTGGCTTA
*
2547352 GGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGCACGCTCGTTTCG
701 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGCACGCTCGTTTCG
2547417 TGGGTTGACTTGGGCATACGGAGTTCACTCCAAGTCGAA
766 TGGGTTGACTTGGGCATACGGAGTTCACTCCAAGTCGAA
* * *
2547456 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA-GGGTTGAGGTAGTACATGCTGG
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACC-ATGGGTTGAGGCAGCACATGCTGG
*
2547520 GCTCAGGCATGTGCTGCAG-CTGCATTTTTCTTCACT-GGGGCACCATCGTC-AGAGCATCGCCG
65 GCTCAGGCATGTGCTGCAGTC-GCATTTTTCTTC-CTCGGGGCACCATCGTCGA-AGCATCGCCA
* * *
2547582 GAGAACCTGACCGACGGCATTAGGGTTACAG-C-AACC-GG-GGGGGTGTGCGCACATGATGTGC
127 GAGAACCTGACCGACGACATT-GGGGTACAGACGAACCGGGAGGGGGTGTGCACACATGATGTGC
* * *
2547643 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC-AACCTCGAGATCTCACA
191 AATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
2547707 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
2547772 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTGCAAGTTTTTAGCTGAATTTTTTTGT
* * * * *
2547837 GCATGCCAAAAAAAATACAATGAGCACGTCTACCTAGTTTGGGCCCAAAACCCCTTCCGAAAGAA
386 GCATGCCAAAAAAAATACAAGGAGCACATCTACCAAGTTTGGGCCCAAAACCCCTTCCAAAAAAA
*
2547902 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
2547967 CCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
516 CCATGAAACTTCATGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
2548032 TGGCATGCAGAAATATGAATATGTGCATAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
581 TGGCATGCAGAAATATGAAGATGTGCATAAACCCACCAACCACCCTATCGATCCACAGCTTGCGC
* * * *
2548097 ATTCCGTCTTTCTGGCCGGCGTAGTGGCCGCCTGCTCGATTCGTTGGTTGGCTTAGGCATACGGA
646 ATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCCTGCTCGATTCATCGGTTGGCTTAGGCATACGGA
2548162 GTTCATTCCCAGTCTAAGATCAGACC
711 GTTCATTCCCAGTCTAAGATCAGACC
2548188 AGATCGAGGG
Statistics
Matches: 664, Mismatches: 61, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
800 59 0.09
801 2 0.00
807 1 0.00
808 394 0.59
809 66 0.10
812 2 0.00
816 5 0.01
817 126 0.19
818 9 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (804 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCATGGGTTGAGGCAGCACATGCTGGG
CTCAGGCATGTGCTGCAGTCGCATTTTTCTTCCTCGGGGCACCATCGTCGAAGCATCGCCAGAGA
ACCTGACCGACGACATTGGGGTACAGACGAACCGGGAGGGGGTGTGCACACATGATGTGCAATGG
GTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATATTGTACACTGCAAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGAGCACATCTACCAAGTTTGGGCCCAAAACCCCTTCCAAAAAAATTTTA
AAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCATGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCATAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGGCCGCCTGCTCGATTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGCGGCACGCTCGTTTCGTGGGTTGACTTGGGC
ATACGGAGTTCACTCCAAGTCGAA
Found at i:2548350 original size:26 final size:26
Alignment explanation
Indices: 2548314--2548364 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2548304 TGACTTAGGG
2548314 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2548340 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2548365 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2549679 original size:864 final size:866
Alignment explanation
Indices: 2547619--2550342 Score: 3345
Period size: 864 Copynumber: 3.1 Consensus size: 866
2547609 ACAGCAACCG
* *
2547619 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
1 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
2547684 CTCATC-AACCTCGAGATCTCACA-CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CTCATCAAACCTCGAGATCTCACACCCT-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2547747 AGTAGCCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTG
130 AGTAACCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTG
* * * *
2547812 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGAGCACGTCTACCTAGTTT
195 TGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAGTGAGCACGTCTACCTAGTTT
* * *
2547877 GGGCCCAAAACCCCTTCCGAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCAT
260 GGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCAT
2547942 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATG
* ** * *
2548007 AATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAATATGTGCATAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
2548072 CACCCTATCGATCCACAGCTTGCGCATTCCGTCTTTCTGGCCGGCGTAGT----G--G-CCGCCT
455 CACCCTATCGATCCACGGCTTGCGCA-TCCGTCTTTCTGGCC-GCGTAGTGCCCGCCGCCCGCCT
* * *
2548130 --GCTCGATTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
518 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * *
2548193 GAGGGTTATGACAGCAGGATCGGTAGCACGCAGAAGGGGACCTGGCCAATCCCCGGCTTGCGCGT
583 GA--GTTGTGGCAACAGGATCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
*** ** * *
2548258 CCTTTCCCTCTGGCCGGTTGAGCCCCCACACCCTCGTTTCGTGGGTTGACTTAGGGATACGGAGT
646 CCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGT
*
2548323 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACT
711 TCATTCCCAG--T-AGCA-A--GAG-T-ATT-CCAG----AG---AGACCAGACCAAGGGTTACG
* *
2548388 GCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGAGCATCACCGGAG
760 GCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGAGCACCACCGGAG
*
2548453 AACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGGTC
825 AACCTGACGGACGGCATTGGGGTTCCGACGATCGGGGGGGTC
*
2548495 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
* * * * *
2548560 CTTATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCGTTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
2548625 GTAGCAATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 GTAACCATTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTG
* * *
2548689 TGAGTTTTTAGATGAA-TTTTTTGTGCATGCCAACAAAAATACAAG-GATCATGTCTACCAAGTT
195 TGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATAC-AGTGAGCACGTCTACCTAGTT
* * *
2548752 TGGGGCCAAAAATCCTTCCGAAAA-AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATC
259 TGGGGCCAAAACTCCTTCC-AAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
* * *
2548816 ATGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
323 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTA
* *
2548881 TGAATTTACACGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCT
388 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* *
2548946 ACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCAGCGTAGTGCCCGTCCGCCCG
453 ACCACCCTATCGATCCACGGCTTGCGCATCC-GTCTTTCTGGCC-GCGTAGTGCCCG-CCGCCCG
* * *
2549011 CCGGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
515 CC--TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * * *
2549076 AAACCGAGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGTTTACG
578 AGACCGAGTTGTGGCAACAGGATCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCG
* * * ** * * *
2549141 CATCCCACCCCTCTGGGCGACTGAGTGCTCTTACGCTCGTTTCATGAGTTGACTTAGGCATACGG
643 CATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGGATACGG
** *
2549206 AGTTCATTCCCAGT-GC-A-AG-A-T-C-G-G-G-CCAGACTGAGGGTTGCGGCAGCACATGCTG
708 AGTTCATTCCCAGTAGCAAGAGTATTCCAGAGAGACCAGACCAAGGGTTACGGCAGCACATGCTG
* * *
2549261 GGCTCAGGCATGTGCTGGTGCCATGTTTTTCTTCGTCGGGGCACCATCGCAGGAGAACCTGACGG
773 GGCTCAAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGAGCACCA-C-C-GGAGAACCTGACGG
** * **
2549326 ACGGCATTTTGGTTCTGGTGATC-GGGGGGTC
835 ACGGCATTGGGGTTCCGACGATCGGGGGGGTC
* * * *
2549357 GAGGGGGGTGTACACACATGATGTGGGATGAGTGCTGGTACTAGGCCCTTATATTGGCCCCTTAT
1 --GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT
* *
2549422 CCCTCATCAAACCTCAAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGC
64 CCCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
2549487 CAGTAATCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
129 CAGTAACCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
2549552 GTGAGTTTTTAGTTCAATTTTTTTTTGCATGCCAACAAAAATACAGTGAGCACGTCTACCTAGTT
194 GTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAGTGAGCACGTCTACCTAGTT
* * **
2549617 TGGGGCCAAAACTCCTTCTAAAAGAATTTTAAAAAATCTCGGACCG-AAAAAGTTTCAAAAATCA
259 TGGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
* * * *
2549681 TGAGAAATAGAAAACAAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTTTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTAT
* * *
2549746 GAATTTACAAGCCTTAACAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
2549811 CCACCCTATTGATCCACGGCTTACGCATCCCATCTTTCTGGTCGACGTAGTGCCCGCCCGCCCG-
454 CCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTTTCTGGCCG-CGTAGTGCCCG-CCGCCCGC
* * * *
2549875 C-CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGG
516 CTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
2549939 CCGAG-GGTTGCAGTAGCAGGATCGGTAGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGTG
581 CCGAGTTGTGGCA--A-CAGGATCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCG
* * ** *
2550003 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTTATTTTGTGGGTTGACTTAGGGATACGG
643 CATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGGATACGG
* * * *
2550068 AGTTCATTTCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAATGGTT
708 AGTTCATTCCCAG--T-AG-C-A-AGAG-T-ATT-CCAG----AGA---GACCAGACCAAGGGTT
* * ** * * * **
2550133 ACGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGTCGCATTTTTCTTTGTCGAAGCATCGTCG
757 ACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGAGCACCACCG
* ** *
2550198 GAGAACCTGACTGACGGCATTGGGGTTCC-AGCGATTAGGGGTG-C
822 GAGAACCTGACGGACGGCATTGGGGTTCCGA-CGATCGGGGGGGTC
** *
2550242 GGAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 -G-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTAT
** *
2550307 CCCTCATCAAACCTCGAGAAATCAC-CCCCCTTAAAG
64 CCCTCATCAAACCTCGAGATCTCACACCCTCTTAAAG
2550343 TGTCTGAAAT
Statistics
Matches: 1586, Mismatches: 201, Indels: 114
0.83 0.11 0.06
Matches are distributed among these distances:
859 5 0.00
860 127 0.08
861 3 0.00
862 114 0.07
863 33 0.02
864 383 0.24
865 81 0.05
866 1 0.00
867 1 0.00
870 1 0.00
871 3 0.00
873 1 0.00
874 2 0.00
875 4 0.00
876 327 0.21
877 131 0.08
878 3 0.00
880 2 0.00
882 2 0.00
883 2 0.00
884 17 0.01
885 107 0.07
886 117 0.07
887 1 0.00
888 118 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
CTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAACCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGT
GAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAGTGAGCACGTCTACCTAGTTTG
GGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCGTCTTTCTGGCCGCGTAGTGCCCGCCGCCCGCCTCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
TTGTGGCAACAGGATCGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATCCCAC
CCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATT
CCCAGTAGCAAGAGTATTCCAGAGAGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCAAG
CATGTGCTGGTGCCATATTTTTCTTCGTCGGAGCACCACCGGAGAACCTGACGGACGGCATTGGG
GTTCCGACGATCGGGGGGGTC
Found at i:2550644 original size:842 final size:841
Alignment explanation
Indices: 2549496--2551052 Score: 2324
Period size: 842 Copynumber: 1.9 Consensus size: 841
2549486 CCAGTAATCA
*
2549496 TTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGTGAGTTTT
1 TTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTGTGAGTTTT
* * * *
2549561 TAGTTCAATTTTTTTTTGCATGCCAACAAAAATACAGTGAGCACGTCTACCTAGTTTGGGGCCAA
66 TAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAGGGAGCACGTCTACCAAGTTTGGGGCCAA
* * * *
2549626 AACTCCTTCTAAAAGAATTTTAAAAAATCTCGGACCGAAAAAGTTTCAAAAATCATGAGAAATAG
131 AACTCCTTCGAAAAGAATTTTAAAAAATCTCGAACCCAAAAAGTTTCAAAAATCATGAAAAATAG
*
2549691 AAAACAAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTTTATGAATTTACAA
196 AAAACAAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
* * * *
2549756 GCCTTAACAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT
261 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
2549821 GATCCACGGCTTACGCATCCCATCTTTCTGGTC-GACGTAGTGCCCGCCCGCCCGCCCGCTCATT
326 GATCCACAGCTTACGCATCCCATCTCTCTGG-CGGACATAGTGCCCGCCCGCCCGCCCGCTCATT
* * *
2549885 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGGCCGAGGGTTGC
390 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGC
* ** * * * * *
2549950 -AGTAGCAGGATCGGTAGCACGTAGAGGGGGACCAGGCCGAT-CCTCGGCTTGTGCATCCCGCCC
455 GA-CAGCAGGATCGACAGCACGTAGAGGAGGACCAGACCGATCCCT-GACTTATGCATCCCACCC
* ** * * *
2550013 CTCTGGCCGACTGAGCGCCCGCACGCTTATTTTGTGGGTTGACTTAGGGATACGGAGTTCATTTC
518 CTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGGATACGAAGTTCATTCC
* * *
2550078 CAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAAGATCGGACCG-GACCAATGGTTACGACAGCA
583 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAG-CCAAGGGTTACGACAGCA
*
2550142 CATGCTGGGCTCA-AGCATGTGCTGGTGTCGCATTTTTCTTTGTCGAAGCATCGTCGGAGAACCT
647 CATGCTGGGCTCAGA-CATGTGCTGGTGTCGCATTTTTCTTCGTCGAAGCATCGTCGGAGAACCT
2550206 GACTGACGGCATTGGGGTTCCAGCGATTAGGGGTGCGGAGGGGGTGTGCGTACATGATGTGCGAT
711 GACTGACGGCATTGGGGTTCCAGCGATTAGGGGTGCGGAGGGGGTGTGCGTACATGATGTGCGAT
2550271 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACCCCC
776 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACCCCC
2550336 C
841 C
*
2550337 TTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGATCACCAAATCTTGTACACT-TCGAGTT
1 TTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTGT-GAGTT
* * * *
2550400 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTTCCAAGTTTGGGGCC
64 TTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAGGGAGCACGTCTACCAAGTTTGGGGCC
2550465 AAAAC-CCTTTCGAGAAA-AATTTTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAATCATGAA
129 AAAACTCC-TTCGA-AAAGAATTTTAAAAAATCTC-GAACC-CAAAAAGTTTCAAAAATCATGAA
* * * *
2550527 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTCAAGGGCCATTGTATGAAT
190 AAATAGAAAACAAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAAT
* **
2550592 TTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
255 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
2550657 CCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCGGGCATAGTGCCCGCTCGCCCGCCTGC
320 CCTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCGGACATAGTGCCCGCCCGCCCGCCCGC
* * *
2550722 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGGCTGAGG
385 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGG
* * *
2550787 GTTGCGACAGTAGGATCGACAGCACGTAGAGGAGGACCCGACCGATCCCTGACTTATGCGTCCCA
450 GTTGCGACAGCAGGATCGACAGCACGTAGAGGAGGACCAGACCGATCCCTGACTTATGCATCCCA
*
2550852 CCCCTCTGGCCGATTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGGATACGAAGTTCAT
515 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGGATACGAAGTTCAT
* *
2550917 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGCCAAGGGTTGCGGCAG
580 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGCCAAGGGTTACGACAG
* * * *
2550982 CACATGCTGGGCTCAGACGTGTGCTGGTGTCTCATTTTTCTTCGTCGAAGCATTGTTGGAGAACC
645 CACATGCTGGGCTCAGACATGTGCTGGTGTCGCATTTTTCTTCGTCGAAGCATCGTCGGAGAACC
2551047 TGACTG
710 TGACTG
2551053 GCCGATCCCC
Statistics
Matches: 636, Mismatches: 69, Indels: 21
0.88 0.10 0.03
Matches are distributed among these distances:
840 6 0.01
841 141 0.22
842 483 0.76
843 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (841 bp):
TTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTGTGAGTTTT
TAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAGGGAGCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCGAAAAGAATTTTAAAAAATCTCGAACCCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACAAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACAGCTTACGCATCCCATCTCTCTGGCGGACATAGTGCCCGCCCGCCCGCCCGCTCATTT
CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCG
ACAGCAGGATCGACAGCACGTAGAGGAGGACCAGACCGATCCCTGACTTATGCATCCCACCCCTC
TGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGGATACGAAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGCCAAGGGTTACGACAGCACATG
CTGGGCTCAGACATGTGCTGGTGTCGCATTTTTCTTCGTCGAAGCATCGTCGGAGAACCTGACTG
ACGGCATTGGGGTTCCAGCGATTAGGGGTGCGGAGGGGGTGTGCGTACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACCCCCC
Found at i:2550934 original size:26 final size:26
Alignment explanation
Indices: 2550904--2550954 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2550894 TGACTTAGGG
2550904 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
2550930 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2550955 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:2551160 original size:26 final size:26
Alignment explanation
Indices: 2551130--2551179 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2551120 TGACTTTGGG
2551130 ATACAGAGTTCATTCCCAATCTAAAC
1 ATACAGAGTTCATTCCCAATCTAAAC
*
2551156 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAATCTAA
2551180 GATCGGATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAAC
Found at i:2551246 original size:226 final size:226
Alignment explanation
Indices: 2550828--2551345 Score: 747
Period size: 226 Copynumber: 2.3 Consensus size: 226
2550818 GAGGACCCGA
* * * *
2550828 CCGATCCCTGACTTATGCGTCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCATTTCATGGG
1 CCGATCCCCGGCTTGTGCGTCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
2550893 CTGACTTAGGGATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGGATACGAAGTTCATTCCCAATCTAAACATACAGAGTTCATTCCCAGTCTAAGATC
* *
2550958 GGACCGAGCCAAGGGTTGCGGCAGCACATGCTGGGCTCAGACGTGTGCTGGTGTCTCATTTTTCT
131 GGACCGAGCCAAGGGTTGCGACAGCACATGCTGGGCTCAGACGTGTGCTGGTGCCTCATTTTTCT
* *
2551023 TCGTC-GAAGCATTGTTGGAGAACCTGACTGG
196 TCATCAG-AGCATCGTTGGAGAACCTGACTGG
* *
2551054 CCGATCCCCGGCTTGTGTGTCCCACCCCTCTGGCCGATTGAGCGCCCACACGCTCGTTTCATGGG
1 CCGATCCCCGGCTTGTGCGTCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGG
*
2551119 TTGACTTTGGGATAC-AGAGTTCATTCCCAATCTAAACATACAGAGTTCATTCCCAGTCTAAGAT
66 TTGACTTAGGGATACGA-AGTTCATTCCCAATCTAAACATACAGAGTTCATTCCCAGTCTAAGAT
** *
2551183 CGGATGGA-CCAAGGGTTGCGACAGCACATGCTGGGCTCGGGA-GTGTGCTGGTGCCTGCATTTT
130 CGGACCGAGCCAAGGGTTGCGACAGCACATGCTGGGCTC-AGACGTGTGCTGGTGCCT-CATTTT
*
2551246 TCTTCATCAGAGCATCGTTGGAGAACTTGACTGG
193 TCTTCATCAGAGCATCGTTGGAGAACCTGACTGG
* ** * * *
2551280 CTGATCCCCGGCTTGCACGTCCCGCCCCTTTGGCCGATTGAGCGCCCGCACGCTCGTTACATGGG
1 CCGATCCCCGGCTTGTGCGTCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGG
2551345 T
66 T
2551346 CGGGGGGGTG
Statistics
Matches: 261, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
225 43 0.16
226 217 0.83
227 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.26
Consensus pattern (226 bp):
CCGATCCCCGGCTTGTGCGTCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGGATACGAAGTTCATTCCCAATCTAAACATACAGAGTTCATTCCCAGTCTAAGATC
GGACCGAGCCAAGGGTTGCGACAGCACATGCTGGGCTCAGACGTGTGCTGGTGCCTCATTTTTCT
TCATCAGAGCATCGTTGGAGAACCTGACTGG
Found at i:2553706 original size:26 final size:26
Alignment explanation
Indices: 2553670--2553722 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2553660 GTTGACTTAG
2553670 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
2553696 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
2553722 G
1 G
2553723 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:2556710 original size:895 final size:893
Alignment explanation
Indices: 2552038--2560703 Score: 10570
Period size: 901 Copynumber: 9.7 Consensus size: 893
2552028 TTTCGTGGGT
* * * *
2552038 TGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGAC-GAGGGGGTGTGGGCACATGATGTCCGA
1 TGACCGACGGCATT-GGGTTCCGGCGATCG-GGGGGCTG-GGGGGTGTGCGCACATGATGTGCGA
*
2552102 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
63 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
2552167 CCCTTAAA-A--ATTTG-GATTTTACAAG-TTACTG-CA-TAGCC-TTAAAGTGTCTTAAAT-GG
128 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
2552223 GACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTGTTAGCTGAATTTTTTTGTGC
193 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
2552288 ATGCCAACAAAAATTCAAGGATCACGTCTGCCAAGTTTGGGTCCAAAACTCCATCCGAAAAAATT
258 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
2552353 TTAAGAAAT-TCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
323 TTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
2552417 CATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATT
387 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
2552482 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGTGCA
452 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * ** *
2552547 ACCCGTCTCTCTGGTCGGCATAGTACCCGCCCGCTCGCCCGCCCACTCGTTCCGTCGGTTGGCTT
517 TCCCGTCTCTCTGGCCGGCGTAGT----G--C-C-CACCCGCCCGGTCGTTTCGTCGGTTGGCTT
* * * * * * * *
2552612 AGGCATACAGTGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCACCAGGATTGG
574 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGG
* * * * * * * *
2552677 TATCACGTAGAGGGGGTCCCCG-CCGATACC-TGGCTTACGCATCCCGTCCCTCTGGCCGGTTGA
639 CAGCACGCAGAGGGGG-ACCCGACCGAT-CCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * *
2552740 GGGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATAC
702 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
2552805 GGAGTTCATTCCCAATCTGAGATCAGA-TCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCTG
767 GGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * * * *
2552869 GAATGTACTGGTGTCGTATTTTTCTTCGTTGGGGCACCATGGCCAGAGCATCACCGGAGAACC
831 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * * *
2552932 TGACTGGCGGTATTGGGGATCCGGTGATAGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGA
1 TGACCGACGGCATT-GGGTTCCGGCGATCGGGGGG-CTGGG-GGGTGTGCGCACATGATGTGCGA
* * *
2552997 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCACATCAAACCTCGAGAACTCACATC
63 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
2553062 CCC-TAGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTATGAAACGG
128 CCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
2553126 GGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
192 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
2553190 CACGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGGCCAAAACTCCTTCC-AAAAAAA
257 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
2553253 TTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
322 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
2553318 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
387 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** * *
2553383 GGCACATAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
452 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
2553448 TCCCGTCTCTCTGGTCGGCATAGTGTCGGTCCGCCCGCCCGCTCGTTTCGTCGGATGGCTTAGGC
517 TCCCGTCTCTCTGGCCGGCGTAGTG-C---CCACCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * ****** *
2553513 AAACAGAGTTCATTCCCAGTCTCAGATC-GAATCGGATTGAGGGTCACAAAAGCAAGATCGGCAG
578 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAG
* * ** * * **
2553577 CACGTAGAGGGGCACCCGGTCGATCCTA-GGCTTACGCATCCCGTCCCTCTAGG-CGGCTGAGTG
642 CACGCAGAGGGGGACCCGACCGATCC-ACGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCA
* * * *
2553640 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCACTCCCAGTCTAAGCATACGAA
705 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
2553705 GTTCATTCCCAGTCTAAGATCGGACT-GAACCGAGGGTTGTGGCAGCACATGTTGAGCTTGGGCA
770 GTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*
2553769 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGAACC
834 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * *
2553818 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCAAT
1 TGACCGACGGCATT-GGGTTCCGGCGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGAT
* ** * *
2553883 GGGTGCCGGTGGTTGGCCCTTATATTGACACCCTATCCCTCATCAAACCTCGAGAACTCACACCC
64 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
2553948 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAGCCA-TAGCCATTAAAGTGTTTGAAATGGG
129 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
2554012 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTATTAGCTGAATTTTTTTGTGC
193 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
2554077 ATGCCAACACAAATAGAAGGATCACGTCTACCAAGATTGGGGCCAAAAGTCCTTCCAAAAAAATT
258 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * ** * * *
2554142 TTAAAAAATCTCGAACTGCAAAAAATTTTGAAAATCGTGAAAAATAAAAAACAAGTTGTCTTGCC
323 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2554207 ATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTG
388 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
2554272 GCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCTT
453 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2554337 CCCATCTCTCTGGCCGGCGTAGTG----CCCGCCCGCTCGTTTCGAT-GGTTGGCTTAGGCATAC
518 CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGGTCGTTTCG-TCGGTTGGCTTAGGCATAC
* ** * * * * *
2554397 GAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATTGACAACACGT
582 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGC
* *
2554462 AGAAGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGCAC
647 AGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * *
2554527 GCTCGTTTCGTTGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG------
712 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
2554582 ---A--C------CAGA-T----CGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGG
777 CCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
2554631 TGCCGTATTTTTTTTTGTTGGGGCACCATCGTCGAAGCATCGTCGGAGAACC
842 TGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * ** * *
2554683 TGGCTGACGACATTGGGGTTCCAACGATCTGGGGGGTCGGGGGGGTGTGCGCACATGATGTTCGA
1 TGACCGACGGCATT-GGGTTCCGGCGATC-GGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGA
* * * *
2554748 TGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACGCT
63 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
2554813 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGG
128 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGG
*
2554877 GGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
192 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
2554942 CATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCC-AAACACCTTCCGAAAAAAT
257 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
2555006 TTTAAAAAATCTCAAACCGTAAAAATTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
322 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
2555071 CATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATT
387 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
2555136 GGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTACCGATCCACGGCTTACGCA
452 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
2555201 TCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGTCGGCCCGCCCGCTCGTTTCGACGGTTGGCTT
517 TCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACC--C-GCCCG---G-TCGTTTCGTCGGTTGGCTT
* * **
2555266 AGGCATACGTAGTTCATTCCCAGTCTAAGATCAGACC-GAATTGAGGGTTACGGTAGCAGGATCG
574 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGCAGGATCG
** * * * * *
2555330 ATAGCATGCAGGGGGGGACCCGATCGATCCACGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
638 GCAGCACGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
2555395 CACCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
703 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
2555460 AAGTTC---CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACGTGCTGGGCTCGGGC
768 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
2555522 ATGTGCTGGTGTCGTATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCATCGGAGAACC
833 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* ** * * * *
2555583 TGGCTAACGGCATTGGGGTTCCGGTGATTTGGGGGGCCGGGGGGGGTGTGCGCACATGGTGTGCG
1 TGACCGACGGCATT-GGGTTCCGGCGA-TCGGGGGG-C-TGGGGGGTGTGCGCACATGATGTGCG
* *
2555648 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGC
62 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
2555713 TCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGGAATGG
127 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2555778 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTATG
192 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
2555843 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AACCTCCTTACGAAAAAAT
257 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
2555907 TTTAAAAAATCTCTAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
322 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
2555972 CATGAAACTTCACGTGAAGGCTT-AGCAGACCATTGTATGAATTTCCAAGCCATAAAAATGGCAT
387 CATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
2556036 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
451 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * **
2556101 ATCCTGTCTCTTCTGGCTGGCATAGTGCCCACCCGCCCGGTCTTTTCAACGGTTGGCTTAGGCAT
516 ATCCCGTCTC-TCTGGCCGGCGTAGTGCCCACCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** * *
2556166 ACAGAATTCATTCCCAGTCTAAGATCAAACCAGACTAAGGGTTGTCGACAACAGGATTGGCAGCA
580 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGT-GGTAGCAGGATCGGCAGCA
* * * * * **
2556231 CGTACAGGGGGACCCGGCCGATCCACGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGTGCCCG
644 CGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* *
2556296 CACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
709 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * * *
2556361 ATTCCCAGTATATGATC-GACTAGACCAAGAGTTGTGGCAACACATGCTGGGCTCGAGCATGTGC
774 ATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** * * ** * *
2556425 TGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATTACCGAAAAACC
839 TGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
*
2556480 TGACCGACGGCATTGGGATTCTGGCGATCGGGGGGACTGGGGGGTGTGCGCACATGATGTGCGAT
1 TGACCGACGGCATTGGG-TTCCGGCGATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGAT
*
2556545 AGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
64 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
2556610 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTTTGAAATGGGG
129 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
2556675 ACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
194 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
2556740 TGCCAAAAAAAATATAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTT
259 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * ** *
2556805 TAAAAAATTTTGAACCGTAAAATGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
324 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
2556870 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGG
389 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
2556935 CACGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
454 CATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
2556999 ACTGTCTCTCTGGCCGGTGTAGTGCCCACCTGCCCGCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
518 CCCGTCTCTCTGGCCGGCGTAGTGCCCA----CCCG-C-C-CGGTCGTTTCGTCGGTTGGCTTAG
* * ** * * *
2557064 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACGGGACCGAGGGTTGTGGTAGCAGGATTGACA
576 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCA
** * * * * * * * *
2557129 GCATACAGAGGGGTACCTGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGTCGGTTAAGCAT
641 GCACGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
2557194 CCGTATGCTTATTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
706 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
2557259 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTGT
771 TTCATTCCCAGTCTAAG-AT-C--AG---------A--CT---A---GACC-GA--G--GGTTGC
* * * *
2557324 GACAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTT-G-CTGGGGCACCATAGT
810 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGT
* ***
2557387 CGAAGCATCGTATGAGAACC
874 CGGAGCATCGCCGGAGAACC
* * * *
2557407 T-AGTCGACGGCATTGAGGTTCCGACGATCTAGGGGGCTGGGGGGGAGTGCGCACATGATGTGCG
1 TGA-CCGACGGCATTG-GGTTCCGGCGATC-GGGGGGCT-GGGGGGTGTGCGCACATGATGTGCG
**
2557471 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGC
62 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
2557536 TCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCCGGAATGG
127 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
2557601 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGC-AAATTTTTTTGT
192 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGT
** *
2557665 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAA
256 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
2557730 GTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTT
321 -TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2557795 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCTATAAAAATGGCA
385 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
2557860 TTGGCATGTAGAAATATAAAGATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTTCCG
450 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
2557925 CATCCCGTCTCTCTGGCCGGTGTAGTG----CCCG--C--TCGTTTCGTCGGTTCGCTTAGGCAT
515 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
2557982 ATGGAGTTCATTCCCAGTCTAAGATCAGACCA-AATCGA--GTTGCGGTAGCAGGATCAGTAGCA
580 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGTAGCAGGATCGGCAGCA
* * * * * * * *
2558044 CGCAGAGGGGGACCTGACCGATCCCCGACTGGTGCATCCTGCCCCTCTGGCCGGCTGAGCATCCA
644 CGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* ** * *
2558109 TACGCTTGTTTCGTGGGTGGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATACGGAGTTC
709 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
2558174 ATTCCCAGTCTAAGATCGGA-TCGGATCGAGAGTTGCGGCAGCACATGCTGGGCTCGAGCATGTG
774 ATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
2558238 CTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGTCGGAGAACC
838 CTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
2558294 TGACCGACGGCATTAGGGTT-------TCGGGGGG-T-----GTGTGCGCACATGATGTGCGATG
1 TGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATG
* * *
2558346 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACCCCCC
65 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
2558411 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
130 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
2558476 CACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGCA
195 CACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
2558540 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAATT
259 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
2558605 TAAAAAATCCCCAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCA
324 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
** *
2558670 TGAAACTTCACGTGAAGGCTTAAGGGAGTATTGTATGAATTTACAAGCTATAAAAATGGCATTGG
389 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
2558735 CATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATTGATCCACAGCTTGCGCATC
454 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** *
2558800 TCGTCTCTCTTGGCCGGCGTAAAGCGCACCTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
519 CCGTCTCTC-TGGCCGGCGT--A--G----TGCCCACCCGCCCGGTCGTTTCGTCGGTTGGCTTA
* * *
2558865 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGA--------G-AGTAGGATCAGC
575 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGC
* * * * * * *
2558921 AGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTAGCCGGCTGAGCC
640 AGCACGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
2558986 CCCGCTCGCTCATTTCGTGGCTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
705 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * *
2559051 GTTCATTCCCATTCTAAGATTGGACTGGACCAAGGGTTGCGGCAGCACATGCCGGGCTCGGGCAT
770 GTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* ** * * *
2559116 GTGCTGGTGTCACATTTTTCTTCCTCGGGGCACAATCGTCGGAGCATCGCCGGAGAACT
835 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* *** * ** * * *
2559175 TGATCGGTAGCATTAGGGTTAC-GATATCGGTGGGGCCGGCGGGTGTGCGCACATGATGTGTGAT
1 TGACCGACGGCATT-GGGTTCCGGCGATCGG-GGGGCTGGGGGGTGTGCGCACATGATGTGCGAT
* * *
2559239 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTCACACCC
64 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
2559304 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGG
129 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
2559369 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCA
194 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
2559434 TGCCAA-AAATAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
259 TGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
2559498 TTAAAAAATCAT-GAACCATAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
323 TTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
2559562 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
387 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * *** *
2559627 GGCACACAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATAACTTGGGCA
452 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
2559692 TGCCGTCTCTCAGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGC
517 TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG---G-TCGTTTCGTCGGTTGGCTTAGGC
* * * * *
2559757 ATACAGAGTTCATTCCCAATCTAAGATTAGACC-GACCTGAGGGTTGTGGCAGCAAGATCGGCAG
578 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGTAGCAGGATCGGCAG
* * * * * * *
2559821 CACACAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTTTGGCCGGTTGAGCACC
642 CACGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * **
2559886 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGT
707 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
2559951 TCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGTGACAGTAGATGTTGGGCTCAGGCATG
772 TCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** *
2560015 TGTTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
836 TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * *
2560073 TGACAGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGTAGGTGTGCGCACATGATATGCG
1 TGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGCT-GGGG--GGTGTGCGCACATGATGTGCG
2560138 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
62 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
2560203 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
127 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2560268 GGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
192 GGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
2560333 GCATGCCAATAAAAATACAAGGATCACATCTGCCAAGTTTGGGG-TAAAACTCCTTCTGAAAAAA
256 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
2560397 TTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
321 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
2560462 CCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
386 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
2560527 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTGTGC
451 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** *
2560592 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCAGCCCGCCCCCTCGTTTCATCGGTTGGCTTAGG
516 ATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCA-CCCGCCCGGTCGTTTCGTCGGTTGGCTTAGG
* *
2560657 CATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTG
577 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
2560704 CAGCAGCACA
Statistics
Matches: 6804, Mismatches: 759, Indels: 411
0.85 0.10 0.05
Matches are distributed among these distances:
854 57 0.01
857 2 0.00
858 1 0.00
859 3 0.00
861 1 0.00
865 268 0.04
866 239 0.04
867 1 0.00
870 2 0.00
871 189 0.03
872 245 0.04
873 31 0.00
874 1 0.00
876 4 0.00
877 186 0.03
878 4 0.00
879 11 0.00
880 182 0.03
881 248 0.04
882 2 0.00
884 3 0.00
885 167 0.02
886 166 0.02
887 72 0.01
888 270 0.04
889 58 0.01
890 3 0.00
891 4 0.00
893 44 0.01
894 509 0.07
895 489 0.07
896 218 0.03
897 371 0.05
898 269 0.04
899 25 0.00
900 123 0.02
901 1236 0.18
902 192 0.03
903 91 0.01
904 25 0.00
905 7 0.00
906 1 0.00
908 1 0.00
910 1 0.00
911 2 0.00
912 149 0.02
913 1 0.00
914 53 0.01
915 1 0.00
916 1 0.00
917 2 0.00
920 1 0.00
921 4 0.00
923 4 0.00
924 1 0.00
926 3 0.00
927 46 0.01
928 314 0.05
929 200 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TGACCGACGGCATTGGGTTCCGGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
Found at i:2557259 original size:26 final size:26
Alignment explanation
Indices: 2557223--2557301 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
2557213 GTGGACTTAG
2557223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2557249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2557275 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2557301 G
1 G
2557302 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2558167 original size:26 final size:26
Alignment explanation
Indices: 2558135--2558187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2558125 GTGGACTTAG
2558135 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
2558161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
2558187 G
1 G
2558188 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:2559053 original size:26 final size:26
Alignment explanation
Indices: 2559016--2559068 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2559006 CTTGACTTTG
*
2559016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2559042 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2559068 G
1 G
2559069 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2562543 original size:718 final size:719
Alignment explanation
Indices: 2559947--2562858 Score: 4351
Period size: 718 Copynumber: 4.1 Consensus size: 719
2559937 TAAGCATATA
* * * *
2559947 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGTAG---ATGTTGGGCTCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T-TG-CAGTAGCACATGCTGGGCTCG
* ** *
2560009 GGCATGTGTTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
63 GGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * * * *
2560074 GACAGGCGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGTAGGTGTGCGCACATGATATGCGA
128 GACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGA
2560139 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
2560204 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGG
* *
2560268 GGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
322 GGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2560333 GCATGCCAATAAAAATACAAGGATCACATCTGCCAAGTTTGGGGT-AAAACTCCTTCTGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAA
*
2560397 TTTAAAAAAATCCCGAA-T-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 TTTTAAAAAATCCCGAACTAC--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2560460 TGCCATA-AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TGCCA-AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
2560524 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTG
578 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
2560589 TGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCAGCCCG-C-CCC-CTCGTTTCATCGGTTGG
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGG
2560651 CTTAGGCATACG
708 CTTAGGCATACG
* *
2560663 GAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
* * * * * *
2560728 ATGTGCTGGTGCTGCATTTTTCTTCCCCAGGGCACCATCGTCGGAGCATTGTCGGAGAACTTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * *
2560793 GGGCGACATTAGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
2560858 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACA-CCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
2560922 TAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGGAC
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGGAC
*
2560987 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTCTTTTTGTGCGT
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCAT
* ** * *
2561051 GCCAACAAAAATACAAGGATCA-TGACTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAGTTT
390 GCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTT
2561115 T-AAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
454 TAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
2561179 TGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
2561244 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATC
584 AATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
2561309 CCGTCTCTCTGGCCGACGTTGTGCCCGCCCG-CCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
649 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
2561373 GCATACG
713 GCATACG
* *
2561380 AAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGCAGCT-GCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-TAGCACATGCTGGGCTCGGG
* *
2561444 CATGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
2561509 -CGAGCGGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
130 CCG-GCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
2561572 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
2561637 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGG
*
2561702 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * ** * * *
2561767 TGCCAACAAGAATACAAGGATTGCGTCTAAAAAGTTTGGGATGAAAACTCCATCCGAAAAAGTTT
389 TGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTT
* *
2561832 TAAAAAATCCCGAACTACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
454 TAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
2561897 ACAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCCTGG
519 AGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
2561962 AATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCATGACTTGCGCATC
584 AATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
2562027 TCGTCTCTCTGGCCGGCGTAGTGGCCCGCCTGCCCGCCAGCTCGCTCATTTCGTCGGTTGGTTTA
649 CCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTA
2562092 GGCATACG
712 GGCATACG
**
2562100 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
* * * *
2562165 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * *
2562230 CGGCGGCATTGGGGTTCC-GCTGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
131 CGGCGGCATTAGGGTTCCGGC-GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
2562293 CTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * **
2562358 TTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGACAGTAGCCATTAAAGTGT-TTGAAATGGGGA
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGGA
* *
2562422 CAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
2562486 GCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTT
* * ** *
2562551 AAAAAATCCCAAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAA
* * *
2562616 GAAACTTCACGTGAAGACTTAAGGGACCATTGTACGAATTTACAAACCATAAAAATGGCATTGGA
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
2562681 ATGCA-AACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
585 ATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
2562745 CCGTCTCTCTGGCCGGTGTAGTTCTCGCCCGCCCGCCCGCCCACTCGTTTTGTCAGTTGGCTTAG
649 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
2562810 GTATACG
713 GCATACG
2562817 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
2562859 GGCTACAGGA
Statistics
Matches: 1993, Mismatches: 174, Indels: 57
0.90 0.08 0.03
Matches are distributed among these distances:
713 11 0.01
714 352 0.18
715 116 0.06
716 229 0.11
717 434 0.22
718 511 0.26
719 32 0.02
720 306 0.15
721 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACG
Found at i:2563005 original size:26 final size:26
Alignment explanation
Indices: 2562969--2563021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2562959 GTTGACTTAG
2562969 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2562995 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2563021 G
1 G
2563022 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2564204 original size:879 final size:875
Alignment explanation
Indices: 2562089--2569848 Score: 9352
Period size: 879 Copynumber: 8.8 Consensus size: 875
2562079 GTCGGTTGGT
* * * *
2562089 TTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGA-CTGGACCGAGGGTTGCAGTAGCACAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGACT-GGATC-AGACCGAGGGTTGCGGCAGCACAT
* * *
2562152 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCG-
64 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGC
* * * *
2562216 TCGAAGAACCTGACCGGCGGCATTGGGGTTCCG-CTGATCAGGGGGCCGGGGGGGTGTGCGCACA
129 T-GGAGAACCTGACCGACAGCATTGGGGTTCCGAC-GATCGGGGGGCCGGGGGGGTGTGCGCACA
* * * *
2562280 TGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCTCGAG
192 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
2562345 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGACAGTAGCCATTAAAGTGT
257 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
2562410 TTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * **
2562474 TTTTTTATGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGTGAAAACTCCTTC
387 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTC
* ** *
2562539 CGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAG
452 CGAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAG
* * *
2562604 TCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTACGAATTTACAAACCATAAA
515 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
2562669 AATGGCATTGGAATGCA-AACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
580 AATGGCATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * * * *
2562733 GGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTTCTCGCCCGCCCGCCCGCCCACTCGTTTTGT
644 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCACTCGTTTCGT
* * * *
2562798 CAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCT
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACTGAGGGTTGCGG-T
* * * * *
2562863 A-CAGGATCAATAGCGCGCAGAGAGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCTTCT
773 AGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *** *
2562926 GGCCGACTGAGCGTTGGCACGCTCGTTTCGTGGGTTGAC
837 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
*
2562965 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCCTTCCCAGTCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCT----A-A-G-A----C-T----G-----GAT-----C
* * ** **
2563030 AGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCACATTTTTCTTCCCC
40 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC
* * * * *
2563095 GAGGCACCATCGTCGGAG-AAC-CT----AACC-GA-CG---GCATTGGCGTTCCGATGAT-AGG
105 GGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGG
* *
2563148 GGGCCAGGGGGGGTGTGCGCACATGATGTTCGATGGATGCTGGTACTTGGCCCTTATATTGGCCC
170 GGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
2563213 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTT
234 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
2563278 GGTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
299 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
2563343 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GACCACGTCTACT
364 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
2563407 AAGTTTGGGGGAAAAAATCCTTCCGAAAAAATTTAAAAGAATCTCAAACCGTAAAAAGTTTCAAA
429 AAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTAAAA-AATCCCGAACCGTAAAAAGTTTCAAA
* * *
2563472 ATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
493 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
2563537 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
2563602 CCTACTAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCCC
623 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG---CC
* * * *
2563667 TCGCCGGCCCGCGCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTGTAAGA
685 -CGCCCGCCCGCGCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * *
2563732 TGAGACTAGACCAAGGGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCC
749 TGAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
** * *
2563797 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTGCGCTCATTTCGTGTGTTAAC
814 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * *
2563859 TTACGCATACGGAGTTTATTCCCAATCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATGC
* * * *
2563924 TGGCCTTGGGCATGTGCTTGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTG
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTG
* * *
2563989 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCAGGGGGCTGGGGGGCTGTGCGCACATGAT
131 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * *
2564054 GTGCGATGGGTGCAGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
2564119 CACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGC
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2564184 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
2564249 TTGTGCATGCCAACAAAAATACAA-GATCACGTCTACTAAGTTTAGGGG-AAAAAATCCTTTCGA
391 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAAACTCCTTCCGA
* * * *
2564312 AAAAATTTAAAAGAATCTCAAACCGTAAAAAGGTTTCAAAAATCGTAAAAAATAGAAAACGAGTC
455 AAAAATTTAAAA-AATCCCGAACCGTAAAAA-GTTTC-AAAATCATGAAAAATAGAAAACGAGTC
*
2564377 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2564442 TGGCATTGGCATGCAGAAATATGTAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * * *
2564507 TTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCTCGCACGCCAACCCGC-CAGCTTGTTTTGTCA
647 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCA-CTCGTTTCGTCG
** * * *
2564571 GTTGGCTTAGGCATACATAGTTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGT
711 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACTGAGGGTTGCGGTAGC
* * * * * * *
2564636 AGGATCGGCAGCACACAGAGGAGGACCCGGCTGATCCCCGGCTTGCGCATCCCTCCCCTCTGGTC
776 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
2564701 GGCTGGGCGCCCGTACGCTCGTTTCATGGGTTAAC
841 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
*
2564736 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAG---ACTG-G---------A-TC-A-GA-C----C
* * * * * * * *
2564801 GGACATAGGGTTACGGCAGCAAATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTT
45 -G----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATC
** * * * *
2564866 GGGGCACCATCG-CTGGAGCATCATTGGAGAACTTGACCGGCGGCATTGGGGTTCCGGC-AGTCG
105 GGGGCACCATCGTC-GGAGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCCGACGA-TC-
* **
2564929 GGGGGGCC-GGGGGGTGTGCGCCCATGATGTGCGATGGACGCTGGTACTTGGCCCTTATATTGGC
167 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
2564993 CCCCTATCCCTCATCAAGCCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGT
232 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
2565058 TTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
297 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
2565123 GTACACTTCGAGTTTTCAGCTGATTTTTCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
362 GTACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * **
2565188 ACCAAGTTTGGAGCCAAAACTCCTTCCGATAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTT
426 ACCAAGTTTGGGGCAAAAACTCCTTCCGA-AAAAATTTAAAAAATCCCGAACCGTAAAA-AGTTT
* * * *
2565253 GAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGAC
489 CAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
2565318 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
554 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
2565383 CCCACCTACTAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGC
619 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-
* * * * *
2565448 CCCCTCGCCGGCCCGCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTGCTAGTCT
683 --CC-CGCCCGCCCGCGCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
2565513 AAGATTAGACCAGACTGAGGGTTGCGATAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
745 AAGATGAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
* * * *
2565578 TCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAACGCCCGCACGCTCGTTTCGTGTGTTAA
810 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAA
2565643 C
875 C
* * * * *
2565644 TTAGGCATACGGAGTTTATTCCCAATCTATGACTGGATCAGACCAAGGGTTGCGACAGCACATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATGC
* * * * * *
2565709 TGGCCTTGGGCATGTGCTTGTGCTGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCTG
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTG
* *
2565774 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGCTGTGCGCACATGAT
131 GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * *
2565839 GTGCGATGGGTGCAGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTGATCAAACCTTGAGAACT
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
2565904 CACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGC
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
2565969 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
2566034 TTTTGCATGCCAACAAAAATACAAGGATCACATCTACTAAGTTTAGGGG-AAAAAATCCTTCCGA
391 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAAACTCCTTCCGA
* * * *
2566098 AAAAATTTAAAAGAATCTCAAACCGT-AAAAGTTTTTAAAAATCATAAAAAATAGAAAACGAGTC
455 AAAAATTTAAAA-AATCCCGAACCGTAAAAAG--TTTCAAAATCATGAAAAATAGAAAACGAGTC
*
2566162 GTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCAT-AAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
2566225 TGGCATTGGCATGCAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * *
2566290 TTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCTCACGTCAGCCCGC-CAGCCTTGTTTTGTC
647 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCA--CTCGTTTCGTC
* * ** * *
2566354 AGTTTGGCTTAGTTCATACATAGTTCATTCTCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGG
710 -GGTTGGCTTAG-GCATACGGAGTTCATTC-CCAGTCTAAGATGAGACCAGACTGAGGGTTGCGG
* * * * * *
2566419 TAGTAGGATCGGCAGCACACAGAGGAGGACCC-AGCTGATCCCCGGCTTGCGCATCCCTCCCCTC
772 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * **
2566483 TGGTCGGTTGGGCGCCCGTACGCTCGTTTCACGGGTTAAC
836 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * *
2566523 TTAGGCATACAGAGTTCATTCCCAGTCTAGATACGTTCATCCCCGTTGAATCGGACCGAGGGTTG
1 TTAGGCATACGGAGTTCATTCCCAGTCT--A-A-G---A----C--TGGATCAGACCGAGGGTTG
* * * **
2566588 CGGCAGAACATGCTGGGCTCGGGCATTTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCAC
53 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGT
* * * * *
2566653 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCC-AGGGGGT
118 CGGAGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGT
* *
2566717 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCA
183 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
2566782 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
248 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
2566847 TTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTT
313 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
2566912 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCATGTTTGGGGCCAA
378 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAA
* * * * *
2566977 AACACCTTCC-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAA
443 AACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAG
2567041 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
507 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * * *
2567106 GCCATAAAAATGGCATTGGCACGCAGAAATGTGAAGAGGTGACTAAACCCACCTACCACCCTGTT
572 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** * *
2567171 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGGACCGCCCGCCCGCCCACTC
637 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCACTC
** *
2567236 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-GACCAGACCAAGGA
702 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGAGACCAGACTGAGGG
* * * * * * *
2567300 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGTCTTGCACATCCCGC
766 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * *
2567365 CCCTCTGGCCGGCTGACCGCTCGCACGCTCGTTTTGTGAGTTGAC
831 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * *
2567410 TTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGATCGGA-TGAAAGGTTGCGGCAGCACAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGACT-GGATCAGACCG-AGGGTTGCGGCAGCACAT
* * * ** * * ** *
2567473 GCTAGGCTCGGGAATGTGCTGGCGTTGTATTTTTCTTCGTAGGGGCACCATCACCGGAGCATTG-
64 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGC
* *
2567537 TCAGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGGTGGGGGCGCGGGGGGGTGTGCGC
129 T-GGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATC-G-GGGGGC-CGGGGGGGTGTGCGC
* * * *
2567601 ACATGATGTGCGATGGGAGCTGGTACCTGGCCCTTATATTGGACCCGTATCCCTCATCAAACCTC
189 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
2567666 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTAGCTGCCAGTAGCCATTAAAG
254 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
2567731 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
319 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * ** *
2567796 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAGGTTTGCAGCCAAAACTCC
384 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCC
* * * * *
2567861 TTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAACTTTTGAAAATCGTGAAAAATAGAAAAC
449 TTCCGAAAAAA-TTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAATCATGAAAAATAGAAAAC
*
2567926 GAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
512 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
2567991 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCC
577 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
2568056 ACGGCTTGCACATCCCGTCTCTCTGGCCGTCG-A-AG--CGCCCGCCCG-CC-CG--CTCGTTTC
642 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCACTCGTTTC
* *
2568113 GTCGGTTGGCTTAGGCAAACGGAGGTCATTCCCAGTCTAAGATTG-GACCAGACTGAGGGTTGCG
707 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGAGACCAGACTGAGGGTTGCG
* * * ** * * * *
2568177 GCAGCAGGATCGATAGCACGTAGAGGCAGACCC-AGTCGATCCCCAGCTTTCGCATCCCGCCTCT
771 GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCT
2568241 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTC
835 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----TA---A---C
* * ** * *
2568299 TTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA-TCGGATCGGACCGACAGTTACGA
1 -TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGACT-GGATCAGACCGAGGGTTGCGG
* * * * ** *
2568363 CAGCGCATGCTGGGCTCGAGCACGTGCTGGTGCTGCGTTTTTCTTCGTCGGGGCACCATCGTCGG
56 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGG
* * * * * *
2568428 AGCATCGCCGAAGAACCTTACCGGCAGCATTGGGGTTACGACGATCGGATGGGCCGGAGGGGGTG
121 AGCATCGCTGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGG-GGGGCCGG-GGGGGTG
* *
2568493 TGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAA
184 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
2568558 ACCTCGAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCAT
249 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
2568623 TAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA---C---TTTTT
314 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
2568682 ---TG---------GTGCATGCCTATAAAAATACAAGGATCACGTATACCAAGTTTGGGCCCAAA
379 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAA
** *
2568735 ACTCCTTATGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
444 ACTCCTTCCGAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAG
*
2568800 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
507 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
2568865 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACTTACCACCCTATC
572 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * **
2568930 GATCCACAGCTTGCGCATCCCATCTCTCTGGCCGACGTA--G--CGCCCG-CCTACC-CG--CTC
637 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCACTC
** * * *
2568987 GTTTTATTGGTTGGCTTAGGTATACGGAGGTCATTCCCAGTCTAAGATTG-GACCAGACTGAGGG
702 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGAGACCAGACTGAGGG
* * * ** **** * *
2569051 TTGTGGTAGCAGGATCGACAGCACACAGAGGGGGAACCGGTCGATCCTTAACTTACGCATCCCAC
766 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
2569116 CCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
831 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
* * * * * * * *
2569161 TTAGGC-TCTCCGAGTTCATTCCCAGTTTAAGATTGGACCAGATCGAGGGTTGCAGCAGCACATA
1 TTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATG
* * * * *
2569225 CTAGGCTCAGGG-ATGTGCTGCTGTCGTATTTTTCTTCATTGGGGCACCATCGTCGGAGCATC-A
65 CTGGGCTC-GGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGC
* *
2569288 TCGGAGAACCTGACCGACAGCATTGGGGTTTCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACG
129 T-GGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACA
* * *
2569352 TGATGTGTGATGGATGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAG
192 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
2569416 AACTCACACCCCTTTCAAAG-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTG
257 AACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
2569480 TCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCTAGTTTTTAGCTGAA
321 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
2569545 TTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACCTCTACCAAGTCTGGGGCCAAAACTCCTT
386 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTT
* *** **
2569610 CTGAAAAAATTTTAAAAAATTTGGAACCACAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGA
451 CCGAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCATGAAAAATAGAAAACGA
* * *
2569675 GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAA
514 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
2569740 AAATTGCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTACCGATCCAC
579 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
2569805 GGCTTGTGCATCCCGTTTCTTTGGCCGACGTAGTGCCCGCCCGC
644 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
2569849 TTGTTTTGTC
Statistics
Matches: 5998, Mismatches: 682, Indels: 411
0.85 0.10 0.06
Matches are distributed among these distances:
850 140 0.02
851 33 0.01
852 2 0.00
853 133 0.02
854 3 0.00
856 5 0.00
858 2 0.00
859 2 0.00
861 2 0.00
862 1 0.00
865 1 0.00
867 4 0.00
868 333 0.06
869 2 0.00
870 3 0.00
871 1 0.00
872 153 0.03
873 7 0.00
874 116 0.02
875 15 0.00
876 55 0.01
877 199 0.03
878 283 0.05
879 968 0.16
880 282 0.05
881 293 0.05
882 301 0.05
883 7 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 136 0.02
888 22 0.00
889 53 0.01
890 277 0.05
891 586 0.10
892 202 0.03
893 8 0.00
894 188 0.03
895 4 0.00
896 8 0.00
897 184 0.03
898 133 0.02
899 2 0.00
901 3 0.00
902 75 0.01
903 300 0.05
904 215 0.04
905 50 0.01
906 11 0.00
907 1 0.00
908 189 0.03
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (875 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTG
GAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAA
AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCGCACTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACTGAGGGTTGCGGTAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTAAC
Found at i:2564770 original size:26 final size:26
Alignment explanation
Indices: 2564740--2564790 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2564730 GTTAACTTAG
2564740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2564766 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
2564791 TGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2568322 original size:26 final size:26
Alignment explanation
Indices: 2568286--2568338 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2568276 GTTGACTTAG
*
2568286 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2568312 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2568338 G
1 G
2568339 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2571533 original size:26 final size:26
Alignment explanation
Indices: 2571493--2571545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2571483 CCAGTTTGAT
**
2571493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
2571519 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
2571545 C
1 C
2571546 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATG
Found at i:2574168 original size:26 final size:26
Alignment explanation
Indices: 2574130--2574182 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2574120 CCGATCCGAC
*
2574130 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
2574156 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2574182 C
1 C
2574183 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2577649 original size:27 final size:27
Alignment explanation
Indices: 2577610--2577665 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
2577600 TCAGTCCGAT
* *
2577610 CTTATACTGGGAACGAACACCATATGC
1 CTTAGACTAGGAACGAACACCATATGC
* * *
2577637 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAACGAACACCATATGC
2577664 CT
1 CT
2577666 AAGTCAACCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (27 bp):
CTTAGACTAGGAACGAACACCATATGC
Found at i:2578546 original size:26 final size:26
Alignment explanation
Indices: 2578510--2578560 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2578500 AGTCTGATCA
*
2578510 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
2578536 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2578561 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2579092 original size:897 final size:894
Alignment explanation
Indices: 2575032--2581240 Score: 6479
Period size: 897 Copynumber: 7.1 Consensus size: 894
2575022 ACTGGGAATG
* * * *
2575032 TGCCTAAGTCAA-CCACG-AACGAGCGTGCAGGCACTCAGCCGGGCAGAGGGGCGGGAATGCGCA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGG-ATGCGCA
* * * * * * * *
2575095 AGTCAGGGATCGGTCTGGTCCACCTCTGCATGCTGCCGATCCTACTACTGTAA-CCTC-GATCTG
65 AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATCCG
* * * *
2575158 AT-CTGATCTTAGACTGGGAATGAACTCCTTATGCCTGAGCCAACCGACGAAACAAGC-GGC---
130 -TCCT-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * * *
2575218 AGGCAGGCACTACGCCGGCCAGAGAGGCAGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTG
193 CGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTG
* * ** *
2575283 GGTTTAGGCACATATTTATATTTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAA
258 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
2575348 TGGTCCCTTAAGCCCTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
323 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
2575413 TTGAAACTTTTTATGGTTAGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGG
388 TAG-AACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGG
* * * *
2575478 TAGATGGGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
451 TAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
2575543 AA-TTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
516 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
2575607 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGG
581 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * ** * *
2575672 GCCAAAATAAGGGCCAAGTACCAGCATCCATCATACATCATGTGCGCCCACTCCCCCGGCCCCCC
646 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* *
2575737 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGT
711 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGC
* * *
2575802 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAA-CC-C-T-C-G--
776 GAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGTCCAGTC
2575860 -G----T---CT--G--T----TCCG-AT-CTTAGACTGGGAATGAACTCCGTA
841 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
*
2575896 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAT
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * ** * * * * * **
2575961 GCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGT-CGGAACCCTCAGTTGGG
66 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT-TCCGCAACCCTCAGATCCG
* * * * *
2576025 T-CTGATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCATCCGACGAAGCGAGCGGGCGGAC
130 TCCT-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* *
2576089 GGGCGGGCACTACGCCGACCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTT
194 -GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACG-T
* * *
2576153 GGGTTTAGGCACATCTTCATATTTATGCATGCCAATG-CAATTTTATGGCTTGTAAATTCATACA
257 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
2576217 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGATGTCTCGTTTTCTATTTTTTCACGAT
322 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGAT
* * * *
2576282 TTTCAAAACTTTTTGGCAGTTCGAGATTTTTTAAAATTTTTT-GGAAGTAGTTTTGGCCCAAACT
386 TTT-AGAACTTTTT-ACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACT
* *
2576346 TGGTAAGATGTGATCCTTTTA-TTTTGTTTGGCATGCACACAAAAATTCAGCTAAAAACTCGAAG
448 TGGT-AGATGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
2576410 TGTACAAGATTTTGTGACCATTTGCAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTTACTGG
511 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TACTGG
*
2576474 CAGCAAACCTGTAAAATCTCAATTGCTCTTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
575 CAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
2576539 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTG
639 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * **
2576604 GCCCCTCGAT-GTCGGAAACCTCAATG-CGCTGGTCAGGTTCTC--AAGATGCTCCGACGATGGT
704 GCCCCCCGATCGTCGG-AACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT
* * * * * * *
2576665 G-CCCGGCG-AGAAAAATGCGGCTTCCCGCAACCTACCGAA-CCCAAGCATGGGCTGCCACAA-C
768 GCCCCGGCGAAGAAAAATGCGGC-ACCAGC-ACATGCCCAAGCCC-AGCATGTGCTGCCGCAACC
* ** * *
2576726 CT-GTCGATGT--GATCTTAGA-TCAGAATGAAACTTCGCTATGGCTTAGACTGCGAATGAACTC
830 CTCGTCCA-GTCCGATCTTAGACTGGGAATG-AACTCCG-TAT-GCTTAGACTGGGAATGAACTC
2576787 CG--
891 CGTA
* * * * * * *
2576789 TG-CTTAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGGC--AGGGGC-GGATGAGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * * * *
2576850 GTCGGCGATCGGTTGGAT--CCCTCTGCGTGCTG-TGAT-CTGC-T--G--A-CC-CAGATCCAG
66 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATCC-G
* * * * *
2576904 TCC-AT-GTAGACTTA-GAATGACCT-CGT-TGCCTAAGCCAA--TACG-AATGAGCGGTGCAGG
130 TCCTATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GCGGG
* * *
2576961 CGGC---AACTA--CTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTG
193 CGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTG
**
2577020 GGTTTAGGCACATCTTCATATTT-TTTGTGCCAATGCCATTTTTTATGGCTTGTAAATTCATACA
258 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACA
2577084 ATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGATA
322 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT-
* * ** *
2577147 TTCAAAACTTTTTGTGGTTCAAGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTTG
386 TTTAGAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAC-TTG
* * *
2577212 GTAGACGGGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
450 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** * *
2577277 CAATTTTTTGTGACCTTTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
515 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
2577341 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTGTGAGTTCTCGAGATTTGATGAGGGATAGG
580 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* * * *
2577406 TGGCCAATATAAAGGGCC-AGTACCAGCATCCATCGCACATCATGTGCGCCCACCCCCCGGCGCC
644 GGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCC
* * * * * *
2577470 CCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGGTTCTCCGACGATGCTCCAATGATGGTGCC
707 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCA-GGTTCTCTGGCGATGCTCCGACGATGGTG-C
* * * * * *
2577535 CCCGGTGAAGAAAAAATACGGCACCAGCACATGCCC-AGCCCAACATGTGCTG-CTCAATCGTCA
770 CCCGGCGAAG-AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTC-
* * * * * *
2577598 GTTCAGTCCGATCTTATACTGGGAACGAACACCATATGCCTTAGACTAGGAATGAACTCCGTA
833 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAATGAACTCCGTA
* * ** *
2577661 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCAAAGGATCGGGATGCGTAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * * * * * ** * * * *
2577726 GAT-AGGGATCGGCCAGGTCCCTCTCTACGCGCTAATCGATCCTGC-TGCACAAGCCTCAG-TCC
66 G-TCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-GCCGATCCTACTTCCGCAACCCTCAGATCC
* * * * * * *
2577788 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAAGCCATCCGACGAAGCAAGCGGACGGG
129 -GTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * **
2577853 CAGGCGGGCAATACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATTT
193 C-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGT
* * *
2577918 GGG-TTAGGCACATCTTCATATTTCTGCATG-GAATGCCATTTTTATGGCTTGTAAATTGATACA
257 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
2577981 ATCGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATT
322 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * **
2578046 TTTGAAACTTTTTACGGTTCGAGATTTTTAAAATCTTTTCAAAAGGAGTTTTGGCCTCAAACTTG
387 TTAG-AACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CAAACTTG
** * * * *
2578111 GTAAGCCGTGATCCTTGTATTCTTGTTGGCATGAAC-AAAAAATTCAGCTAAAAATTCAAAGTGT
450 GT-AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
2578175 ACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGC
514 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
2578240 AAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
579 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
*
2578305 GGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCG
644 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-
* * * *** * *
2578370 CCCGATCATTGGAACCCCGATTTTGCTGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGCCCC
708 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCC
* * * *
2578435 GACGATGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGAATGTGCTGCCGCAACCCTTGGTCC
773 GGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCC-TCGTCC
* * *
2578500 AGTCTGATCATAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
837 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* **
2578558 TGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
** * * **
2578623 GTCGGGGATTAGTCGGGTCCCCCTTTGCGTGCTGCCAATCCTACTTCCATAACCCTCAG-TCCGT
66 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATCCGT
*
2578687 CCCTATCTTAGACTAGGAATGAACTCCGTATG-CTAAGCCAACCGACGAAACGA-CGGGCAGGCG
131 -CCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* ** *
2578750 GCCGGGCACTACGCCGGCCAGAGAGACGGGATATGCAAG-CGTCGATCGATAGGGTGGTACGTGG
195 G-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGG
* * *
2578814 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTATGGCTTGTGAATTCATACAAT
259 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
2578879 GGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
324 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
2578944 TGAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCACAAACTTGGT
389 AGAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CAAACTTGGT
* * *
2579009 AGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAATTCAGCTAAAAACTCAAAGTGTAC
452 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTAC
* *
2579074 AAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
516 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
2579139 ACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGC
581 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * ** * *
2579204 ACCAATATAAGAGCCAAGTACCAACACCCATTTCACATCATGTGTGCACA-CCCCCCAGCCCCCT
646 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-
** *
2579268 CGATCACCGGAAGCCCC-ATGCCGTCGGTCAGGTTCTC---C---G----G-C-ATGGTGCCCCG
710 CGATCGTCGGAA-CCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCG
** * * * ** *
2579320 GTAAAGAAAAATACGG-ACCAGCACATGCTCGAGCCGTGCATGTGCTGTTCC-TAACCCTCG---
774 GCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG--CCGCAACCCTCGTCC
*
2579380 A-TCTGA---T---CT---AAT---CT---TA-----A-ACT-GGAATGAAACTCCGTA
837 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-AACTCCGTA
** *
2579416 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-TGGCCAGAGGGGCGGAGATGTGC
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCAGCCAGAGGGGCGG-GATGCGC
* * * * * *
2579480 AAGCCGGGGATCGGTC-GATCCCCCTCTGTGTGCTGTCGAT-CTACTACCGCAACCATCAG-TCT
64 AAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATC-
* * * * * ** ** * *
2579542 GGT-CTGTCTTAGACTGGGAATGACCTCCGTATGAC-AAAACAACTAACGAAAATGAAGCGGGTG
128 CGTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACG-AGCGGGCG
* * * * * *
2579605 GGCGAGAAGGCGGGCACTACGTCGACCAGAGAGACGAGACGCGCAAGCCATGGATCGAT---GTG
191 GGC-----GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
2579667 GT-CGGTTGGTTTCGGCACATCTTCATATTTCTAG-GTGCCAATGCCA-TTTTATGGCTTGTAAA
251 GTAC-GTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
2579729 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-G-AAGACGACTCGTTTTTTA-TTT
314 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
2579791 TCACGATATTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTGTTCAGAAAGAGTTTTGGC
379 TCACGATTTTAG-AACTTTTTACGGTTCGAGA--TTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
2579856 CCTAAACTTGGTAGATGTGATCCTTGTATATTTTTTTTGCATGCATAAAAAAATTCAGCTAAAAA
441 CC-AAACTTGGTAGATGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
2579921 CTGGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
504 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
2579986 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
569 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* *
2580051 GAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
634 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * * *
2580116 CCCCTCGACCCCCCCGATCGTCGTAACCCCAATGCCGCCGGTCAGGTT-TTTCGACGATGCTCCG
698 CCCC-CG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCT-GGCGATGCTCCG
* * * * * * *
2580180 GCGATGGTGCCCCGGCAAAGAAAAATGCAGAACCAGCACATGCTCGAGCCCAGCATGTGCTACCG
760 ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* ** * *
2580245 CAACCGTCGGTCTGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAAC
825 CAACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
2580310 TCCGTA
889 TCCGTA
** *
2580316 TGCCTAAGTCAACCCATTAAA--A---T--GAGCG-T--G-CAGGCC------G-GGGAT---CA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-GCCAGAGGGGCGGGATGCGCA
* * * * *
2580360 A-TC----A-------GGTCCCCCT-TGCGTGCTACCGTTCTTGCTGCCGCAACCCTC-GATCCA
65 AGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATCC-
* * * *
2580411 ATCCGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
129 GTCCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * ** *
2580476 GGGTGGGCACTACGTCAGCCAAAGAGATGGAATGCGCAAGCCGTGGATCGATAGGGTGGT-CGGT
194 -GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAC-GT
* * *
2580540 GGGTTTTGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
257 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
2580605 ATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
322 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * ** * *
2580670 TTCAAAAATTTTTCCGGTTCGGGATTTTTAAAA--TTTTCGCAAATCA-TTTTGCCCCAAGCTTG
387 TT-AGAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCAAACTTG
* * *
2580732 GTAGATGTGATCCTTGTATTTTT-TTGGTATGCACAAAAAAATTCAGCTCAAAACTTGAAGTGTT
450 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG-T
* * *
2580796 AC-ACATTTTGTGACCCATATTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTTCTGGCA
514 ACAAGATTTTGTGA-CCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
2580860 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTAAGGTTTGATGAGGGATA
577 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * * * *
2580925 GGGGGCCAATATAAGTGCCAAATACCAGCACCCATCGCACATTATGTGTGCACACCCCCCCTCGA
642 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-CGG
* * *
2580990 CCCCCCGATCGCCGTAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTCC
705 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT----C--TG----G-CGATGCTCC
* * ** *
2581055 GACGATGGTGCCCCGACCAAGAAAAATGCACCACCAGCACATG-CCAGAGCCCAGCATGTGTTGC
759 GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCA-AGCCCAGCATGTGCTGC
* * * * *
2581119 TGCAACCCTCGGTCCGGTCCGATCTTAGAATGAGAATGAACTCCGTGTGCTTAGACTGGGAATGA
823 CGCAACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
*
2581184 ACTCCATA
887 ACTCCGTA
* * * * *
2581192 TGCCTAAGTCAA-CCACGGAACGAGCGTGTGGGTGCTCAGTCGGCCAGAG
1 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAG
2581241 CNNNNNNNNN
Statistics
Matches: 4509, Mismatches: 582, Indels: 483
0.81 0.10 0.09
Matches are distributed among these distances:
856 36 0.01
857 40 0.01
858 115 0.03
859 275 0.06
860 72 0.02
861 59 0.01
862 164 0.04
863 181 0.04
864 153 0.03
865 116 0.03
866 338 0.07
867 179 0.04
868 105 0.02
869 75 0.02
870 147 0.03
871 218 0.05
872 117 0.03
873 141 0.03
874 139 0.03
875 51 0.01
876 161 0.04
877 15 0.00
878 18 0.00
879 15 0.00
880 8 0.00
881 5 0.00
882 9 0.00
883 32 0.01
884 29 0.01
885 14 0.00
886 16 0.00
887 20 0.00
888 16 0.00
889 22 0.00
890 20 0.00
891 5 0.00
892 45 0.01
893 18 0.00
894 27 0.01
895 134 0.03
896 224 0.05
897 406 0.09
898 165 0.04
899 223 0.05
900 135 0.03
901 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCAGATCCGT
CCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAG
AACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGAT
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGCGAAGA
AAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGTCCAGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
Found at i:2580302 original size:26 final size:26
Alignment explanation
Indices: 2580266--2580318 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2580256 CTGGACCGAT
2580266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2580292 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2580318 C
1 C
2580319 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2580891 original size:866 final size:860
Alignment explanation
Indices: 2574247--2581205 Score: 6382
Period size: 897 Copynumber: 8.0 Consensus size: 860
2574237 ATGCGTAAGT
* * * ** * *
2574247 CGGGGATCGATC-GAGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCATAACCCTCAATCCGATC
1 CGGGGATCAATCAG-GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTC
* * *
2574311 CGATCTTAGACTGGTAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGTGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
*
2574375 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGT
130 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * *
2574440 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTGCTTTTAAATTCATACAATGG
195 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
2574505 TCCCTTAATCCTTCACGTGAAGTTTCATGGCAGGATGACTCATTTTCTATTTTTCATGATTTT-G
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * *
2574569 AAACTTTTTGAGGTTTGAGATTTTTCAAAATCTTTTTTGGAAGGA-TTTTGGCCCCAAACTTGGT
325 AAACTTTTTGCGGTTCGAGATTTTT-AAAA--TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
*
2574633 AGAGGTGATCCTTGTATTATTGTTCTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGATAGTGT
387 AGATGTGATCCTTGTATT-TT-TT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGT
*
2574697 ACAAACATTTTGTGACCATTTGAAAAAAAGTGTCCCAATTTCAGACAACTTTAATGGCTACTGGC
448 AC-AACATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGAC-ACTTTAATGGCTACTGGC
* *
2574762 AGCAAACCTGTAAAATCTC-AATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGAGAT
510 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * * * *
2574825 AGGGGG-CAATATAA-GGCC-AGTAGCAGCA-CCATCGTAACATCGTGTGC-CGCACGCCCCCGG
575 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CACATCATGTGCGCACACCCCCCCGC
* ** * **
2574885 CCCCTGATCATCGG-A---CAATG-CGTTGGTCACGGTTATCCGGTGATGCTCCGACGA--GTG-
639 CCCCCGATCATCGGAACCCCAATGCCGCCGGTCA-GGTT-TTCGACGATGCTCCGACGATGGTGC
** * * * **
2574942 -CCGATAAAGAGAAAAT-TGGCAACAGCACAT-CC-AGCCCAGCATAGTGCTTGTCCAG-AGCGG
702 CCCGGCAAAGA-AAAATGCGGCACCAGCACATGCCGAGCCCAGCAT-GTGC-TG-CC-GCAACCC
* * * * * * * *
2575002 TCGGTCCGGTTCGATCTTTGACTGGGAATG---TGCC-TAAG-TCA-ACCACGAACGAGCGT--G
762 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCTTAGACTACGAATGAAC-TCCG
* * * * ** ** *** ** * * *
2575059 CAGGCACTCAGCCGGGCAGAGGGGCGGGAATGCGCAAGT
825 TATGC-CTAAGTC-AACCCA-GGAAAGGAGCGTGCAGGC
* ** * * * * * * * * *
2575098 CAGGGATCGGTCTGGTCCACCTCTGCATGCTGCCGATCCTACTACTGTAA-CCTC-GATCTGATC
1 CGGGGATCAATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTC
* * * * *
2575161 TGATCTTAGACTGGGAATGAACTCCTTATGCCTGAGCCAACCGACGAAAC-A---AGC-GGCAGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * *
2575221 CAGGCACTACGCCGGCCAGAGAGGCAGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
130 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** *
2575286 TTAGGCACATATTTATATTTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGG
195 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
2575351 TCCCTTAAGCCCTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
** * * * *
2575416 AAACTTTTTATGGTTAGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAG
325 AAACTTTTTGCGGTTCGAGATTTTTAAAA-TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
2575481 ATGGGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA-
389 ATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAC
* *
2575545 TTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACT
453 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
2575610 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCC
518 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
* * ** * *
2575675 AAAATAAGGGCCAAGTACCAGCATCCATCATACATCATGTGCGCCCACTCCCCCGGCCCCCCGAT
583 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGCCCCCCGAT
* * * * **
2575740 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGTGAA
647 CATCGGAACCCCAATGCCGCCGGTCAGGTTTTC-GACGATGCTCCGACGATGGTGCCCCGGCAAA
* * *
2575805 GAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCTGTTCCG
711 GAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * * * * *
2575870 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG--GGCGCT
775 ATCTTAGACTGGGAATGAACTCCGTATG-CTTAG---A-CTACG-AATGAAC-TCCGTATGC-CT
* * * ** * * *
2575933 CAG-CCAGCCA-GAGGGGCGGGATGCGCATGC
832 AAGTCAACCCAGGAAAGGAGCG-T--GCAGGC
* * * * * * * * ** *
2575963 CGAGGATCGACCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGTCGGAACCCTCAGTTGGGTCT
1 CGGGGATCAATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCC
* * * * *
2576028 GATCTTAGACTTGGAATGAACTTCGTATGCCTAAGCCATCCGACGAAGCGAGCGGGCGGACGGGC
66 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
2576093 GGGCACTACGCCGACCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTT
131 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
2576158 TAGGCACATCTTCATATTTATGCATGCCAATG-CAATTTTATGGCTTGTAAATTCATACAATGGT
196 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
2576222 CCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGATGTCTCGTTTTCTATTTTTTCACGATTTTCA
261 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTCG
* * * *
2576287 AAACTTTTTGGCAGTTCGAGATTTTTTAAAATTTTTTGGAAGTAGTTTTGG-CCCAAACTTGGTA
325 AAACTTTTT-GCGGTTCGAGA-TTTTTAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT-
* *
2576351 AGATGTGATCCTTTTATTTTGTTTGGCATGCACACAAAAATTCAGCTAAAAACTCGAAGTGTACA
387 AGATGTGATCCTTGTATTTT-TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
2576416 AGATTTTGTGACCATTTGCAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTTACTGGCAGCAA
451 ACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TACTGGCAGCAA
*
2576480 ACCTGTAAAATCTCAATTGCTCTTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
515 ACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
2576545 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCT
579 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCC
* * * * *
2576610 CGAT-GTCGGAAACCTCAATG-CGCTGGTCAGGTTCTC-AAGATGCTCCGACGATGGTG-CCCGG
643 CGATCATCGG-AACCCCAATGCCGCCGGTCAGGTTTTCGACGATGCTCCGACGATGGTGCCCCGG
* * * * * * * *
2576671 C-GAGAAAAATGCGGCTTCCCGCAACCTACCGAACCCAAGCATGGGCTGCCACAA-CCT--GTC-
707 CAAAGAAAAATGCGGC-ACCAGC-ACATGCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGGTCT
* ** ** * *
2576731 GATGTGATCTTAGA-TCAGAATGAAACTTCGCTATGGCTTAGACTGCGAATGAACTCCG--TG-C
769 GGTCCGATCTTAGACTGGGAATG-AACTCCG-TAT-GCTTAGACTACGAATGAACTCCGTATGCC
* * *
2576792 TTAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGGC
831 TAAGTCAACCCAGGAAAGGAGCGT----G----CA----GGC
* ** *
2576834 AGGGGCGGATGAGCAAGTCGGCGATCGGTTGGATCCCTCTGCGTGCTG-TGAT-CTGCT---G--
1 --CGG-GGAT---CAA-T---C-A--GG-T--CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA
* * ** * *
2576892 A-CC-CAGATCCAGTCC-AT-GTAGACTTAGAATGACCT-CGT-TGCCTAAGCCAA--TACG-AA
50 ACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
2576948 TGAGCGGTGCAGGC-GGC---AACTAC-T-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
114 CGAGCGG-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
**
2577007 TA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTTGTGCCAATGCCATTTTTTATGGCT
178 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTATGGCT
2577070 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCAAGACGACTCGTTTTC
242 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2577134 TA-TTTTCACGATATTCAAAACTTTTTGTGGTTCAAGATTTTTAAAATTTTTTCGGAAGGAGTTT
307 TATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTAAAA-TTTTTCGAAAGGAGTTT
* *
2577198 TGG-CCCAAACTTTGGTAGACGGGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTA
371 TGGCCCCAAAC-TTGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTA
** * *
2577262 AAAACTCGAAGTGTACAATTTTTTGTGACCTTTTG-AAAAAGTGTCCCCATTTCAAACACTTTAA
434 AAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
2577326 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTGTGAGTTCTCGAGAT
499 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGT
* *
2577391 TTGATGAGGGATAGGTGGCCAATATAAAGGGCC-AGTACCAGCATCCATCGCACATCATGTGCGC
563 TTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
2577455 CCACCCCCCGGCGCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGGTTCTCCGACGATGC
627 ACACCCCCC--CGCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCA-GGTT-TTCGACGATGC
* * ** * * *
2577520 TCCAATGATGGTGCCCCCGGTGAAGAAAAAATACGGCACCAGCACATGCCCAGCCCAACATGTGC
688 TCCGACGATGGTG-CCCCGGCAAAG-AAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGC
* * * * * * * * * *
2577585 TG-CTCAATCGTCAGT-TCAGTCCGATCTTATACTGGGAACGAACACCATATGCCTTAGACTAGG
751 TGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTACG
* *
2577648 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGC
814 AATGAACTCCGTATGCCTAAGTCAACCCA-GGAA--AG-GAGC--GTG--CAG---GC
* * * **
2577706 CAAAGGATCGGGATGCGTAAGATAGGGATCGGCCAGGTCCCTCTCTACGCGCTAATCGATCCTGC
1 C----G---GGGAT-C-------A---AT----CAGGTCCCCCTCTGCGTGCT-GCCGATCCTGC
* * * * * *
2577771 TG-CACAAGCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAAGCCATCCG
43 TGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
2577835 ACGAAGCAAGCGGACGGGCAGGCGGGCAATACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
108 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
** * *
2577900 ATCGATAGGGTGGTATTTGGG-TTAGGCACATCTTCATATTTCTGCATG-GAATGCCATTTTTAT
173 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
2577963 GGCTTGTAAATTGATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGT
238 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
2578028 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAATCTTTTCAAAAGGA
303 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTAAAAT-TTTTCGAAAGGA
* ** * *
2578093 GTTTTGGCCTCAAACTTGGTAAGCCGTGATCCTTGTATTCTTGTTGGCATGAAC-AAAAAATTCA
367 GTTTTGGCCCCAAACTTGGT-AGATGTGATCCTTGTATT-TTTTTGGCATGCACAAAAAAATTCA
* * * *
2578157 GCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACT
430 GCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
2578222 TTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGA
495 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
2578287 GGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
560 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *** * * * *
2578352 GCACACCCCCCCGGCCCGCCCGATCATTGGAACCCCGATTTTGCTGGTCAGGTTCTCTGGCAATG
625 GCACACCCCCCC-GCCC-CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTTTC-GACGATG
* * * * *
2578417 CTCCGACGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGAATGTGC
687 CTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGC
* ** * * * **
2578482 TGCCGCAACCCTTGGTCCAGTCTGATCATAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAA
751 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAA
* * *
2578547 TGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCAGC
816 TGAACTCCGTATGCCTAAGTCAACCCAGGAAAGGAGCGT------G--CAG---GC
* * *
2578603 CAGAGGGGCAAGATGCGCAAGTCGGGGATTAGTCGGGTCCCCCTTTGCGTGCTGCCAATCCTACT
1 C----GGG---GAT---CAA-TC-------A----GGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* ** * *
2578668 TCCATAACCCTCAGTCC-GTCCCTATCTTAGACTAGGAATGAACTCCGTATG-CTAAGCCAACCG
44 GCCGCAACCCTCAGTCCGGT-CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * ** *
2578731 ACGAAACGA-CGGGCAGGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATATGCAAG-CGTCG
108 ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
2578794 ATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATACCATTTTTAT
173 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
2578859 GGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCAT
238 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
2578924 TTTCTATTTTTCATGATTTTTG-AACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGGAAGG
303 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGA-TTTTTAAAA-TTTTTCGAAAGG
* * * *
2578988 AGTTTTTGCCACAAACTTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAATTC
366 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAA-AAATTC
* * * *
2579053 AGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
429 AGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2579118 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
494 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* ** * * **
2579183 AGATTTGATGAGGGATAGGGCACCAATATAAGAGCCAAGTACCAACACCCATTTCACATCATGTG
559 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
2579248 TGCACACCCCCCAGCCCCCTCGATCACCGGAAGCCCC-ATGCCGTCGGTCAGG---T------T-
624 CGCACACCCCCCCGCCCCC-CGATCATCGGAA-CCCCAATGCCGCCGGTCAGGTTTTCGACGATG
* * * **
2579302 CTCCGGC-ATGGTGCCCCGGTAAAGAAAAATACGG-ACCAGCACATGCTCGAGCCGTGCATGTGC
687 CTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGC
* * * ** * *
2579365 TGTTCC-TAACCCTCGATCTGATCTAATCTTAAACT-GGAATGAAACTCCGTATGCCTAAGTCAA
751 TG--CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG-AACTCCGTATG-CTTAG---A
* * * * * ** * *** * *
2579428 CCCACGAAACGAGCGTGCG--GGCGCTCAAGT-GGCCAGAGGGGCGGAGATGTGCAAGC
809 -CTACG-AATGAAC-TCCGTATGC-CT-AAGTCAACC-CAGGAAAGGAG-CGTGCAGGC
** * * * * * * * *
2579484 CGGGGATCGGTC-GATCCCCCTCTGTGTGCTGTCGAT-CTACTACCGCAACCATCAGTCTGGTCT
1 CGGGGATCAATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCC
* * ** ** * *
2579547 G-TCTTAGACTGGGAATGACCTCCGTATGAC-AAAACAACTAACGAAAATGAAGCGGGTGGGCGA
66 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACG-AGCGGGCGGGC--
* * * * *
2579610 GAAGGCGGGCACTACGTCGACCAGAGAGACGAGACGCGCAAGCCATGGATCGAT---GTGGTCGG
127 G--GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
2579672 TTGGTTTCGGCACATCTTCATATTTCTAG-GTGCCAATGCCA-TTTTATGGCTTGTAAATTCATA
190 TGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
2579735 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-G-AAGACGACTCGTTTTTTA-TTTTCACGA
254 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
2579797 TATTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTGTTCAGAAA-GAGTTTTGGCCCTAA
319 TTTTCGAAACTTTTTGCGGTTCGAGA--TTTTTAAAATTT-TTC-GAAAGGAGTTTTGGCCCCAA
* * *
2579861 ACTTGGTAGATGTGATCCTTGTATATTTTTTTTGCATGCATAAAAAAATTCAGCTAAAAACTGGA
380 ACTTGGTAGATGTGATCCTTG--TATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
2579926 AGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
443 AGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
2579991 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGG
508 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
2580056 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCT
573 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-
* * *
2580121 CGACCCCCCCGATCGTCGTAACCCCAATGCCGCCGGTCAGGTTTTTCGACGATGCTCCGGCGATG
636 CG--CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGG-TTTTCGACGATGCTCCGACGATG
* * * *
2580186 GTGCCCCGGCAAAGAAAAATGCAGAACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCG
698 GTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCC
* * **
2580251 TCGGTCTGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTA
762 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCCGTA
** *
2580316 TGCCTAAGTCAACCCATTAAAATGAGCGTGCAGGC
827 TGCCTAAGTCAACCCA-GGAAAGGAGCGTGCAGGC
* * * **
2580351 CGGGGATCAATCAGGTCCCCCT-TGCGTGCTACCGTTCTTGCTGCCGCAACCCTC-GATCCAATC
1 CGGGGATCAATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTC
*
2580414 CGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * * *
2580479 TGGGCACTACGTCAGCCAAAGAGATGGAATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGT
130 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
2580544 TTTGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
195 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
2580609 TCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * ** *
2580674 AAAATTTTTCCGGTTCGGGATTTTTAAAA-TTTTCGCAAATCA-TTTT-GCCCCAAGCTTGGTAG
325 AAACTTTTTGCGGTTCGAGATTTTTAAAATTTTTCG-AAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
2580736 ATGTGATCCTTGTATTTTTTTGGTATGCACAAAAAAATTCAGCTCAAAACTTGAAGTGTTAC-AC
389 ATGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG-TACAAC
* *
2580800 ATTTTGTGACCCATATTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTTCTGGCAGCAAA
453 ATTTTGTGA-CCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
2580865 CCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGG
516 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * * *
2580930 CCAATATAAGTGCCAAATACCAGCACCCATCGCACATTATGTGTGCACACCCCCCCTCGACCCCC
581 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-CG-CCCCC
** * *
2580995 CGATCGCCGTAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGCTCCGACGA
643 CGATCATCGGAACCCCAATGCCGCCGGTCAGG-T-T-------T--T-CGACGATGCTCCGACGA
* * ** * *
2581060 TGGTGCCCCGACCAAGAAAAATGCACCACCAGCACATGCCAGAGCCCAGCATGTGTTGCTGCAAC
696 TGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAAC
* * * * ** *
2581125 CCTCGGTCCGGTCCGATCTTAGAATGAGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTCCA
760 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCCG
2581190 TATGCCTAAGTCAACC
825 TATGCCTAAGTCAACC
2581206 ACGGAACGAG
Statistics
Matches: 5092, Mismatches: 704, Indels: 599
0.80 0.11 0.09
Matches are distributed among these distances:
840 36 0.01
841 34 0.01
842 52 0.01
843 9 0.00
844 21 0.00
845 56 0.01
846 226 0.04
847 41 0.01
848 1 0.00
849 1 0.00
850 56 0.01
851 64 0.01
852 9 0.00
853 3 0.00
854 6 0.00
855 49 0.01
856 36 0.01
857 43 0.01
858 70 0.01
859 244 0.05
860 82 0.02
861 68 0.01
862 169 0.03
863 198 0.04
864 148 0.03
865 104 0.02
866 332 0.07
867 213 0.04
868 128 0.03
869 79 0.02
870 152 0.03
871 218 0.04
872 126 0.02
873 131 0.03
874 172 0.03
875 48 0.01
876 153 0.03
877 24 0.00
878 15 0.00
879 8 0.00
880 5 0.00
881 12 0.00
882 2 0.00
883 33 0.01
884 59 0.01
885 19 0.00
886 16 0.00
887 18 0.00
888 15 0.00
889 7 0.00
890 19 0.00
891 14 0.00
892 10 0.00
893 14 0.00
894 28 0.01
895 110 0.02
896 212 0.04
897 386 0.08
898 160 0.03
899 222 0.04
900 104 0.02
901 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
CGGGGATCAATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
AACTTTTTGCGGTTCGAGATTTTTAAAATTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAT
GTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCGATCATC
GGAACCCCAATGCCGCCGGTCAGGTTTTCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAA
ATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCCGTATGCCTAAGTCAACCCAGGA
AAGGAGCGTGCAGGC
Found at i:2581045 original size:11 final size:11
Alignment explanation
Indices: 2581029--2581061 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2581019 CGGTCAGGTT
2581029 CTCCGACGATG
1 CTCCGACGATG
2581040 CTCCGACGATG
1 CTCCGACGATG
2581051 CTCCGACGATG
1 CTCCGACGATG
2581062 GTGCCCCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:2582895 original size:26 final size:26
Alignment explanation
Indices: 2582865--2582915 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2582855 GTTAACTTAG
2582865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2582891 GCATACTGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
2582916 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2584679 original size:26 final size:26
Alignment explanation
Indices: 2584643--2584695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2584633 GTTGACTTAG
2584643 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
2584669 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2584695 G
1 G
2584696 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2586451 original size:26 final size:26
Alignment explanation
Indices: 2586415--2586467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2586405 GTTGACTTAG
*
2586415 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2586441 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2586467 G
1 G
2586468 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2587921 original size:868 final size:869
Alignment explanation
Indices: 2582242--2588092 Score: 6909
Period size: 879 Copynumber: 6.6 Consensus size: 869
2582232 NNNNNNNNNN
*
2582242 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTC
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
2582307 TGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
2582372 TTTTTGTGCATGCCAACAAAAATACAA-GACCACGTCTACTAAGTTTAGGGG-AAAAAATCCTTC
131 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTC
* * * * *
2582435 CGAAAAAA-TTTAAAAGAATCTCAAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGA
195 CGAAAAAATTTTAAAA-AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
2582499 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAA
259 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
2582564 AAATGGCATTGGCATGCAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
324 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
2582629 GGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGCACGTCAGCCCGC-CAGCTTGTTTTG
389 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGC-C--CA-CCCGCTC-G-TT-TCTTG
* ** * * *
2582693 TCAGTTGGCTTGGGCATACATAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGT
447 ---GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * * * ** * * *
2582758 AGTAGGATCGGCAACACACAGAGAAGGACCCG-GCTGATCCCCGGCTTGCGCATCCCTCCCCTCT
509 AGCAGGATCGACAGCACATAGAGGGGGACCCGATC-GATCCCCAGCTTGCGCATCCCGCCCCTCT
* * * * * *
2582822 GGTCGGCTGGGCGCCCGTACGCTCGTTTCATGGGTTAACTTAGGCAT-A-CGGAGTTCATTCCCA
573 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCATCCGAGTTCATTCCCA
* *
2582885 GTCTAAGCATACTGAGTTCATTCCCAGTCTATGATCGGATCGAACATAGGGTTACGGCAGCAAAT
638 GTCTAAG-AT--TG-G---------A-TC-A-GA-C----CG-----AGGGTTGCGGCAGCACAT
* * * *
2582950 GCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCG-CTGGAGCATCG
677 GCTAGGCTCGGGCATGTGCTGGTGC-GTATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCG
* * ** * *
2583014 TTGGAGAACTTGACCTTCGGCATTGGGGTTCCGGC-AGTCGGGGGGGTGTCGGGGGGGTGTGCGC
740 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TC-GGGGGG-G-CCGGGGGGTGTGCGC
* * * *
2583078 CCATGATGTGCGATGGACGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTT
801 ACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
2583143 AAGA
866 AAGA
* * * *
2583147 GCTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTACTGTCAGTAGCCATTAAAGTGTC
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
2583212 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTCAGCTGATTT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
2583277 TTCTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTT
131 TT-TTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** *
2583342 CCGATAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTTGAAAATCGTGAAAAATAG-AAACGA
194 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
2583406 GTCATCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
259 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
2583471 AAATGGCATTGGCATGCAGAAATATGAA-ATGTGCCTAAACCCACCTACTAGCCTATCGATCCAC
324 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
2583535 GGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCCCTCGCCGGC-CCGTGCGCTCGT
389 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--CG---CC-CGCC--CACC---CGCTCGT
* * * **
2583599 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATTAGACCAGACCGAGCTTTG
441 TTC-TTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * *
2583664 CGGCAGTAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
505 CGGCAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCC
* * * * *
2583729 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTAACTTAGTCAT-A-CGGAGTTTATTC
570 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCATCCGAGTTCATTC
* * * *
2583792 CCAATCTAAGACTGGATCAGACCGAGGGTTGCGGCAGCACATGCT-GGCCTTGGGCATGTGCTTG
635 CCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGG-CTCGGGCATGTGCTGG
* * * *
2583856 TGCCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCG-CTGGAGAACCTGACCGACAGCA
699 TG-CGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCA
* * * *
2583920 TTGGGGTTCCGGCGATC--GGGGGCTGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCAGGTA
762 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGATGCTGGTA
* **
2583983 CTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGA
826 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
2584027 ACTCACACCCCCTCAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTC
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
2584092 TGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
* * *
2584157 TTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTTTC
130 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
2584222 CGAAAAAATTTTAAAAAATCCTGAACCCCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAG
195 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
2584287 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCACAAA
260 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
2584352 AAAGGCATTGGC--GCATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCTATCCA
325 AATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
2584415 CGGCTTACGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCACCCGCTCGTTTCGTCGTTGGC
388 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCTCGTTTCTTGGTTGGC
* * * * * * * *
2584480 TTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGAATT
453 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * ** *
2584545 GACAGCACGTAGAGGGTGACCCGACCGATGCCCAGCTTGCGCATCCCATCCCTCTGGCCAGCTGA
518 GACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
2584610 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAT
583 GCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T--C-ATC----C----
* * * *
2584675 GGAGTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGCAGAACATGCTGGGCTCGGG
625 -GAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGG
* * * *
2584740 CATTTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATC-ACTGGAGCATCGCCGGAGAACCTG
689 CATGTGCTGGTG-CGTATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTG
* * ** *
2584804 ACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTACGATGG
752 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
2584869 GTGCGGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCAAGA
817 ATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
*
2584922 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
2584987 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
2585052 TTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCATGTTTGGGGCCAAAACACCTTCC
131 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
2585117 --AAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGT
196 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
2585179 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
261 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * *
2585244 ATGGCATTGGCACGCAGAAATGTGAAGAGGTGACTAAACCCACCTACCACCCTGTTGATCCACGG
326 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
2585309 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGACCGCCCGCCCGCCCATTCGTTTCTTCG
391 CTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--CGCCCGCCCACCCG--C--TCGTTTCTT-G
* * *
2585374 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGATTGCGGCAGC
447 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * *
2585439 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTC-GTCTTGCACATCCCGCCCCTCTGGC
512 AGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGC
* ** * * *
2585503 CGGCTGACCGCTTGCACGCTCGTTTTGTGAGTTGACTTAGGCAT-A-CGGAGTTCATTCCCAGTC
576 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCATCCGAGTTCATTCCCAGTC
* * * * * * *
2585566 TAAGATCGGATCGGA-TGAAAGGTTGCGGCAGCACATGCTAGGCTCGGGAATGTGCTGGCGTTGT
641 TAAGATTGGATCAGACCG-AGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTG-CGT
* * ** * * *
2585630 ATTTTTCTTCGTAGGGGCACCATCACCGGAGCATTGTCAGAGAACCTGACCAGCGGCATTGGGGT
704 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
*
2585695 TCCGACGATCGGTGGGGGCGCGGGGGGGTGTGCGCACATGATGTGCGATGGGA-GCTGGTACCTG
769 TCCGACGATCGG-GGGGGC-C-GGGGGGTGTGCGCACATGATGTGCGAT-GGATGCTGGTACTTG
* *
2585759 GCCCTTATATTGGACCCATATCCCTCATCAAACCTCAAGA
830 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
2585799 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTAGCTGCCAGTAGCCATTAAAGTGTC
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
2585864 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * **
2585929 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAGGTTTGCAGCCAAAACTCCTTCC
131 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** * ** *
2585994 GAAAAAATTTTAAAAAATCCCGAACCATAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGT
196 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
2586059 CGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
261 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
2586124 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGG
326 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
2586189 CTTGCACATCCCGTCTCTCTGGCCGTCGAAGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
391 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCTCGTTTC-TTGGTTGGCTT
* * ** *
2586254 AGGCAAACGGAGGTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
455 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * ** * * * *
2586319 TAGCACGTAGAGGCAGACCCGGTCGATCCCCAGCTTTCGCATCCCGCCTCTCTGGCCGACTGAGC
520 CAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
2586384 GCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATATGG
585 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGG----C--A------T--CA-TC----C-----G
* ** * * * * *
2586449 AGTTCATTCCCAGTCTAAGATTGGATCGGACCGACAGTTACGACAGCGCATGCTGGGCTCGAGCA
626 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
* * * * *
2586514 TGTGCTGGTGCTGTGTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTTACC
691 TGTGCTGGTGC-GTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * ** * *
2586579 GGCAGCATTGGGGTTACGACGATCGGATGGGCCGGAGGGGGTGTGCGCACATGATGTGCTATGGG
755 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGA
* *
2586644 TGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGA
818 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * * * *
2586696 ACTCACATCCCCTTAAAGAGAATTTGAGATTTTATAAGTTTGCTGCTAGTAGCCATTAAAGTGTT
1 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
2586761 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA---C---TTTTT---TG----
66 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * **
2586813 -----GTGCATGCCTATAAAAATACAAGGATCACGTATACCAAGTTTAGGCCCAAAACTCCTTAT
131 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
**
2586873 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
196 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
2586938 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
261 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
2587003 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACTTACCACCCTATCGATCCACAG
326 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
2587068 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGCGCCCGCCTACCCGCTCGTTTCATTGGTTGGCTT
391 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCTCGTTTC-TTGGTTGGCTT
* * ** * *
2587133 AGGTATACGGAGGTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGA
455 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
2587198 CAGCACACAGAGGGGGAACCGGTCGATCCCCAACTTACGCATCCCACCCCTCTGGCCGGCTGAGC
520 CAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
2587263 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-TC-TCCGAGTTCATTCCTAGTTTAAGATTGG
585 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCATCCGAGTTCATTCCCAGTCTAAGATTGG
* * * * *
2587326 ACCAGATCGAGGGTTGCAGCAGCACATACTAGGCTCAGGG-ATGTGCTGCTGTCGTATTTTTCTT
650 ATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTC-GGGCATGTGCTGGTG-CGTATTTTTCTT
* * * * *
2587390 CATTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGCGGTATTGGGGTTTCGACGAT
713 CATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * *
2587455 CGGAGGGGCCGGGGGGTGTGCGCACGTGATGTGTGATGGATGCT-GTACTTGGCCCTTATATTGG
778 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGG
* *
2587519 CCCCCTATCCCCCATCAAACCTCGAGA
843 CCCCCTATCCCTCATCAAACCTCAAGA
* *
2587546 ACTCACACCCCTTTCAAAG-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGT
1 ACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
2587610 CCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAAT
65 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
2587675 TTTTTTATGCTTGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTC
130 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** *
2587740 TGAAAAAATTTTAAAAAATCTGGAACCGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAG
195 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
2587805 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAA
260 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
2587870 AATGGCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTACCGATCCACG
325 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** *
2587935 GCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTACCCG----CCCGCTCGTTTCGTCGGTTGGCT
390 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCTCGTTTC-TTGGTTGGCT
* * ** ** * * *
2587996 TAGGCATACAGAGTTCATTTCCAGTCTAAGATCAGAGTAGAAGGAGGGTTACAGCAGTAGGATCG
454 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
** * * *
2588061 GTAGCACACAGAGGGGGCCCCGACCGATCCCC
519 ACAGCACATAGAGGGGGACCCGATCGATCCCC
2588093 GACTTGCCAT
Statistics
Matches: 4318, Mismatches: 492, Indels: 313
0.84 0.10 0.06
Matches are distributed among these distances:
850 139 0.03
851 33 0.01
852 1 0.00
853 133 0.03
854 3 0.00
856 5 0.00
858 1 0.00
859 2 0.00
862 2 0.00
864 99 0.02
866 1 0.00
868 410 0.09
869 11 0.00
871 1 0.00
872 156 0.04
873 6 0.00
874 137 0.03
875 8 0.00
876 15 0.00
877 255 0.06
878 6 0.00
879 551 0.13
880 484 0.11
881 70 0.02
883 3 0.00
884 99 0.02
885 4 0.00
887 1 0.00
888 3 0.00
889 5 0.00
891 197 0.05
892 10 0.00
893 5 0.00
894 199 0.05
895 205 0.05
896 19 0.00
897 179 0.04
898 130 0.03
899 11 0.00
900 138 0.03
905 124 0.03
906 76 0.02
907 113 0.03
908 69 0.02
909 8 0.00
910 171 0.04
911 3 0.00
912 1 0.00
913 8 0.00
914 7 0.00
915 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCACCCGCTCGTTTCTTGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACATAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATCATCCGAGTTCATTCCCAGTCTAAGATTGGA
TCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCGTATTTTTCTTCAT
CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCAAGA
Found at i:2588481 original size:26 final size:26
Alignment explanation
Indices: 2588452--2588511 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
2588442 GTTGACTTAG
*
2588452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
2588478 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
2588504 G-ATA-GGAC
1 GCATACGGAC
2588512 CGGACTGAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 26 0.79
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:2590441 original size:900 final size:898
Alignment explanation
Indices: 2588095--2593290 Score: 6852
Period size: 896 Copynumber: 5.8 Consensus size: 898
2588085 CGATCCCCGA
* *
2588095 CTTGCCATAAAACTTCA-TGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
1 CTTGCCATGAAACTTCACT-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * * *
2588159 GGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCT
65 GGCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
2588224 TGCGCATCCAGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGG
130 TGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGG
* * ** * *
2588288 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-GAACTGAGGGTTGTGGTAGCAAGA
194 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAA--GAGGGTTGCAGCAGCAGGA
** * * * *
2588352 TCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGGCTT-TCGCATCCTGCCCCTCTGGCCGGC
257 TCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGT-GCATCCCGCCCCTCTGGCCGGC
* * * *
2588416 TGAGCTCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
321 TGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * * *
2588481 TACGGACTTCATTCCCAGTCTAAGAT-AGGACCGGACTGAGGGTTACGACAGCACAAACTGGGCT
386 TACGGAGTTCATTCCGA-TCTAAGATCA-GATCAGACCGAGGGTTGCGGCAGCACATACTGGGCT
* * * * * * *
2588545 CGGG-ATGTGCTTGTGCCACATATTTCTTCCCCGGGGCACCATTGCTGGAGCAACGTCGGAGAAC
449 CGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * * *
2588609 TTGACCGAC-GACATTAGGGTTCCAGCGATCGGGGGGGCC-AGGGGG-GTGCGCACATGATGTGC
514 CTGACCGACGGA-ATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
2588671 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
578 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2588736 CCCCCTTAAAGAGCATTTGAGA--TT-----TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
643 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2588794 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
708 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2588859 GCATGCGAACAAAAATACAAGGATCACGACTACCAGGTTTGGGGCCAAAACACCTTCCGAAAAAA
773 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
* *
2588924 TTTTAAAAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATGGAAAACGAGTCGT
838 TTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2588985 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2589050 GCATTGGCATGCAAAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCAC-GCTT
66 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2589114 GCGCATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCG----CCCGTTCATTTCGTCGGTTGGCT
131 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
* *
2589175 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGAAGGAGGGTTGCAGTAGCAGGATCG
196 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-GAGGGTTGCAGCAGCAGGATCG
* * *
2589240 ATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
260 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
2589305 CGCCCGTAAGCTCTTTTCGTGGGTTAACTTGGGCATACGGAGTTCATTCCCACTCTAAGCATACG
325 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
2589370 GAGTTCATTCCTGATCTAAGATCATATCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGC
390 GAGTTCATTCC-GATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGC
* * * * ** *
2589435 ATGTGCTGGTGTCGTATTTTTCTTTGTCGGGGCACCATCATCGGAGCATC-ACTGGAGAACCTGA
454 ATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGA
2589499 CCGACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
518 CCGACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
2589564 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAACCCTCGAGAACTCGCACCCCC
583 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2589629 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
648 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * *
2589694 ACTTTTTTCGAATGGTCACAAAATGTTGTACACTTCGATTTTTTAGCTGAAGTTTTTTATGCATG
713 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
2589759 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
778 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
* * *
2589824 AAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATGGAAAACGAGTCGT
843 AAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
2589880 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGAGCATTGTTTGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2589945 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTACCGATCCACGGCTT
66 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** ** *
2590010 GTGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCAACTTTTTTCGTCGGTTGGTT
131 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
* *** *
2590075 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAAATGGAAGAAGAGTTGCAGCAGCAGGATCG
196 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAAG-AGGGTTGCAGCAGCAGGATCG
* * * * *
2590140 GTAGCACGCAGAGGGGGACCCGATCGATCCCTGACTTGTGCAGCTCGTCCCTCTGGCCGGCTGAG
260 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
2590205 TGCCCGTACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
325 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
2590270 AAGTTCATTCTCGATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGC
390 GAGTTCATTC-CGATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGC
* * *
2590335 ATGTGCTGGTGCCATATTTTTCTTTGTCGGGGCAACATCGCCGGAGCATCG-CTGGAGAACCTGA
454 ATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGA
* * *
2590399 CCGACGGAATTGTGGTTCCGGAGATAGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
518 CCGACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
2590464 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCACACCCCC
583 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
2590529 TTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCACTAGCCATTAATGTGTCTCAAAATGGGGA
648 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGA
*
2590594 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA------AGCTG-ATTTTTTTGTGCGT
712 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
2590652 GCCAA-AATAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAGTT
777 GCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATT
*
2590715 TTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
840 TTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
2590774 CTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
2590839 GCATTGGCATGCAGCAATATGAAGATGTACCCAAACCCACCTACCACCCTACCGATCCACGGCTT
66 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
2590904 GCGCATCCCGTCTCTTTGGCCGACGTAGT----GCCCG----CCCGCTCGTTTCGTCGGTTGGCT
131 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
* * * * *
2590961 TAGGCATACAGAGTTCATTTCCAGTCTAAGATTAGACTAGAAGGAGGGTTGCAGTAGCAAGATCG
196 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-GAGGGTTGCAGCAGCAGGATCG
* * * * * *
2591026 GTAGCACACAGAGGGGGCCCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGACTTAG
260 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
*
2591091 CGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
325 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
2591156 GAGTTCATTCCCGATCTAAGATCGGATCAGACCGAGGGTCGTGGCAGCACATGCTGGGCTCGGGC
390 GAGTTCATT-CCGATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGC
* * * * * *
2591221 ATGTGCTGGTGCCACATTTCTCTTTGTCGGGGCACCATCACCGGAGCGTCG-CTGGAGAACCTGA
454 ATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGA
*
2591285 CCGACGGAA-TGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGA
518 CCGACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
2591349 GTGCTGGGACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAACCCTTGAGAACTCGCACCCCC
583 GTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
2591414 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
648 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
2591479 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATG
713 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * ** ** * *
2591544 CCAACAAAAATACAAGGATCGCATCTAAAAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTAA
778 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
** * *
2591609 AAAAATCCTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
843 AAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
2591665 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
2591730 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTT
66 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2591795 GCACATCCCATCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGC
131 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGC
* * * * * ** * *
2591859 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAAGGTTGTGGCAGTAGGATT
195 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-AGAGGGTTGCAGCAGCAGGATC
* * * * * ** * * *
2591924 GGCAGCACGGAGAGAGGGACCCGGCCGATCTCCGGTTTGTGCATCCCGGCCCTCTAGCCGACTGA
259 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
2591989 GCTCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATTC
324 GCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
2592054 GGATTTCGTTCCCAGTCTAAGAT-AGGATCAGACCAAGGGTTGCGACAGCACA-AGCTGCGCTCG
389 GGAGTTCATTCCGA-TCTAAGATCA-GATCAGACCGAGGGTTGCGGCAGCACATA-CTGGGCTCG
* * * * * *
2592117 GG-ATGTGCTTGTGCC-TCATTTTTCTTCCCCGGGGCACCATTGCTGGAGCAACGTCGGAGAACT
451 GGCATGTGCTGGTGCCAT-ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * * *
2592180 TGACCGATGGCATTAGGGTTCCGGCGATCGGGGGGGCC-AGGGGG-GTGCGCACATGATCTGCGA
515 TGACCGACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
2592243 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTGCCTCATCAAACCTCGAGAACTCACACC
580 TGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * **
2592308 CCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-AAAAATGGG
645 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
2592372 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCT-
710 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TG
* * *
2592436 CATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAAT
774 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
** * *
2592501 TTTAAAAAATCCTGAACCGCAAAACA-TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
839 TTTAAAAAATCCCAAACCACAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
2592561 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATG
1 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * * * *
2592626 GCATTGGCAAGTAGAAATATGAGGATGTGGCTAAACCCACGTACCATCCTATCAATCCACGGCTT
66 GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
2592691 GCGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGTCT
131 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
* * * * *
2592756 TAGACATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGTGGGTT-CCGACAGCAGGATC
196 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-AGAGGGTTGCAG-CAGCAGGATC
* * ** * * *
2592820 GGTAGCACCCAGAGGGGGACCC-AGCCGATCCCCGACTTATGTTTCCCACCCCTCTGACTGGCTG
259 GGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
2592884 AGCGCCCACAGGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-
323 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
2592947 C-G-G---A-T-CG------GATC-G----GACTGAGGGTTACGGCAGCACATGCTGGGCTCGGG
388 CGGAGTTCATTCCGATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGG
* * * * *
2592994 CATGTGCTGGTGCCGTATTTTTATTCACCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGA
453 CATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * * * ** * *
2593059 CCGACGGCATTGGGGTTTC-GACGATTGAGAGGTCCCAGGGGGCTGTGCGCACATGATGTGCGAT
518 CCGACGGAATTGGGGTTCCGGA-GATCG-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
2593123 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCC
581 GGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
2593188 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGG
646 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
2593253 ACACTTTTTTCAAATGGTCACAAAATCTTGTACGACTT
711 ACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTT
2593291 GCGCATCCCG
Statistics
Matches: 3832, Mismatches: 403, Indels: 151
0.87 0.09 0.03
Matches are distributed among these distances:
875 29 0.01
876 73 0.02
877 6 0.00
878 4 0.00
879 134 0.03
880 43 0.01
881 4 0.00
884 48 0.01
885 404 0.11
886 395 0.10
887 10 0.00
888 100 0.03
889 37 0.01
890 126 0.03
891 262 0.07
892 2 0.00
893 4 0.00
894 276 0.07
895 351 0.09
896 546 0.14
897 129 0.03
898 64 0.02
899 256 0.07
900 482 0.13
901 47 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAAGAGGGTTGCAGCAGCAGGATCGG
TAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCGATCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCAT
GTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
ACGGAATTGGGGTTCCGGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAA
AATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
Found at i:2591159 original size:26 final size:26
Alignment explanation
Indices: 2591123--2591175 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2591113 GTTAACTTAG
2591123 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCGA-TCTAA
2591149 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
2591175 G
1 G
2591176 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:2595098 original size:26 final size:26
Alignment explanation
Indices: 2595062--2595112 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2595052 TTGACTTAGG
2595062 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
*
2595088 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
2595113 GATCGGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:2595999 original size:26 final size:26
Alignment explanation
Indices: 2595963--2596015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2595953 GTTGACTTAG
*
2595963 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2595989 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2596015 G
1 G
2596016 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2596260 original size:902 final size:902
Alignment explanation
Indices: 2594358--2596325 Score: 2924
Period size: 902 Copynumber: 2.2 Consensus size: 902
2594348 AGGCATGTGC
* * *
2594358 TGGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TGGGCCCCTATCCCTC
* * *
2594423 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAATA
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
2594488 GCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAG
130 GCAATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTCTACACTTTGAG
* * *
2594553 TTTTTTGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGACTACCAAGTTTGGGG
194 TTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGACTACCAAGCTTGGGG
** *
2594618 CCAAAACTCCTTCTGAAAAAATTATAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCGTAAAA
259 CCAAAACTCCTTCTGAAAAAATTATAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCGTAAAA
*
2594683 AAAAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAAGGGGCCATTGTATGAATT
324 AAAAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATT
2594748 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
389 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
2594813 CTATCGATCCACAGCTTCCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCC
454 CTATCAATCCACAGCTTCCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCC
* * * *
2594878 TACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCGTTCCCAGTCTAAGATCAGACCAGATCG
519 CACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCG
* * * * * * **
2594943 AGGGTTATGGCAGCAGGATCGGTAGCATGGAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
584 AGGGTTACGACAGCAGGATCAGTAGCACGCAAAGGGGGACCCGACCGATCCCCAACTTGCGCATC
** *
2595008 CCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTT
649 CCGCCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
* * * *
2595073 CATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGATTAGACTGAGGGTTGTGG
714 CATTCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGAATGAGGGTTGTGG
* * * * * * *
2595138 CAGCACATGGTGGGATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGTGCACGATCGTCGG
779 CAGCACATGCTGGGATCGGGCATCTACTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGA
* * ** *
2595203 AGCATCGCCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGATCGGGAGGGTCGGGG
844 AGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGG
* * * *
2595262 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCA
1 TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTATCCCTCA
* * *
2595327 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
2595392 CAATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
131 CAATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAGTT
* *
2595457 TTTAGCTGAAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATTGT-ATCTACCAGGCTTGGGG
196 TTTAGCT-AAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGA-CTACCAAGCTTGGGG
* * *
2595520 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAAAACCGTAAAAAGTTTCAAAAATCGTGAAA
259 CCAAAACTCCTTCTGAAAAAATTATAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCGTAAAA
* * * *
2595585 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
324 AAAAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATT
*
2595650 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
389 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * **
2595715 CTATCAATCCACGGCTTGCACATCCTGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCTTGTCC-GC
454 CTATCAATCCACAGCTTCCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG-CCTGC
** *
2595779 CCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
518 CCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
* * *
2595844 GAGGGTTACGACAGTAGGATCAGTAGCACGCAAAGGGGTACCCGATCGATCCCCAACTTGCGCAT
583 GAGGGTTACGACAGCAGGATCAGTAGCACGCAAAGGGGGACCCGACCGATCCCCAACTTGCGCAT
* ** * *
2595909 CTCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
648 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGT
* * * *
2595974 TCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCAGA-CCGAATCGAGTGTTGT
713 TCATTCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGAAT-GAGGGTTGT
* * * *
2596038 GGTAGCACATGCTGGGCTCGGGCATCTACTGGTGCTGTATTTTTCTTCACT-GGGGCACCATCGT
777 GGCAGCACATGCTGGGATCGGGCATCTACTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGT
* * *
2596102 CGAAGCATTGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGG-GGGCCAGGGG
841 CGAAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCC-GGGG
*
2596164 TGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTATCCCTCA
1 TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTATCCCTCA
*
2596229 TCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
2596294 CCAA-TGAAGTGTCTGAAATGGGGTCACTTTTT
131 -CAATTAAAGTGTCTGAAATGGGGACACTTTTT
2596326 TTAAATGATC
Statistics
Matches: 952, Mismatches: 105, Indels: 16
0.89 0.10 0.01
Matches are distributed among these distances:
901 8 0.01
902 793 0.83
903 107 0.11
904 44 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CAATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTCTACACTTTGAGTT
TTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGACTACCAAGCTTGGGGCC
AAAACTCCTTCTGAAAAAATTATAAAAAATCCAAAACCATAAAAAGTTTCAAAAATCGTAAAAAA
AAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCAATCCACAGCTTCCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCA
CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
GGTTACGACAGCAGGATCAGTAGCACGCAAAGGGGGACCCGACCGATCCCCAACTTGCGCATCCC
GCCCCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGAATGAGGGTTGTGGCA
GCACATGCTGGGATCGGGCATCTACTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGAAG
CATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGG
Found at i:2597546 original size:26 final size:26
Alignment explanation
Indices: 2597517--2597595 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2597507 GTTGACTTAG
*
2597517 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
2597543 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2597569 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2597595 G
1 G
2597596 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:2598871 original size:903 final size:889
Alignment explanation
Indices: 2596348--2599142 Score: 3615
Period size: 915 Copynumber: 3.1 Consensus size: 889
2596338 ATGCAGAAAT
* * * *
2596348 ATGGCATTGACATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCAATCCACGG
1 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
2596413 CTTGTGCATCCCATCTCTCTGGCCGACGTTGTGCCCGCCCGCC-CGCTCGTTTAGTCGGCTGGCT
66 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCGCTCGTTTAGTCGGTTGGCT
* * * *
2596477 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGATAGCAAGATCG
131 TAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGTAGCAGGATC-
* * * * *
2596542 GCAGCA-CGCAAAGGGGGACCCGGCTTGCGCATCCCACCCCTC-TGGTCGGCTGAA-CGCCCGTA
195 GCAACAGCACAAAGGGGGACCCGGCTTACGCATCCCGCCCCTCTTGCT-GGCT-AAGCGCCCGTA
* ** * *
2596604 CGCTCGTTTCGTGGGTTGACTTAAGCATACAAAATTCATTCCCAGTCTAAGCGTACGGAGTTCAT
258 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * *
2596669 TCCCAGT-CTTAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCT
323 TCCCAGTGAATAGATCGGACCGGACCGAGGGCTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
2596733 GGTGTCACATTTTTCTTCGCCGAGGCACCA---T--CATAGGAGCATTGCCGGAGAACCTGACCG
388 GGTGCCATATTTTTCTTCGCCGAGGCACCATCGTCGCATAGGAGCATCGCCGGAGAACCTGACCG
2596793 ACGGCATTGGGGTTCCGGCGATC-GGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
453 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
2596855 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCGTT
518 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
2596920 AAAGTGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGAGTCTGAAATGGGGACAC
583 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
2596985 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAACTGAATTTTTTTTTTTGCATG
648 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCATG
* * *
2597050 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTAA
711 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCTGAAAAAATTTTA
* * * * *
2597115 AAAAATCCTGAAATGCTAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCGATG
775 AAAAAT-CTCAAATGCAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
2597180 AAACTTCACGTGAAGGCTTAAGGAACCATTGTATCAATTTACAAGACATAAAA
838 AAACTTCACGTGAAGGCTTAAGG-GCCATTGTATGAATTTACAAGCCATAAAA
* ** *
2597233 AAGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGG
1 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
2597298 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
66 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCG--CGCTCGTTTAGTCGGTTG
* * * *
2597363 GCTTAGGCATACGAAGTTCATTCCCAGTGTAAGATTAGACTGGACTGACGGTTTTGGTAGCAGGA
128 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGTAGCAGGA
* * *
2597428 TCG--ACAGCACGAAAAGGGGGACCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTCAGCGCCCG
193 TCGCAACAGCAC--AAAGGGGGACCCGGCTTACGCATCCCGCCCCTCTTGCTGGCTAAGCGCCCG
* * * * *
2597491 TACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAAGCATACGAAGTTC
256 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
*
2597556 ATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACC-AAGGCT-TGCA
321 ATTCC----C--AG--T-----G---A-----A---T-AGATCGGACCGGACCGAGGGCTGTG--
* *
2597619 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCG
359 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGCACCATCGTCG
* * *
2597684 ---A--AGCATCGCCTGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGG
424 CATAGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGCGG
*
2597744 GGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
489 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
2597809 CATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTAGACGTTTGCTGCTAGT
554 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
2597874 AGACATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GA
619 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-
* *
2597938 AGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGG
683 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
2598003 GGCCAAAATGCCTTTTGAAAAAATTTTAAAAAATCTCAAATTGCAAAAAGTTTCAACAATCATGA
748 GGCCAAAAT-CCTTCTGAAAAAATTTTAAAAAATCTCAAA-TGCAAAAAGTTTCAA-AATCGTGA
* * * *
2598068 AAAATAGAGAACGAGTCATCTTACCATGAAACTTCACGTGAAGGGTTAAGGGCCATTGTATGAAT
810 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCATTGTATGAAT
2598133 TTACAAGCCATAAAA
875 TTACAAGCCATAAAA
* * * * *
2598148 ATGGTATTGGCATGTAGGAATATGAGGATGTGCCTAAACCCACCTACCAGCCTATCGATCCATGG
1 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
2598213 CTTGCGCACCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGTCTGCTCGTTTTGTCGGTTG
66 CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCG-C-GCTCGTTTAGTCGGTTG
* * * * * *
2598278 GCGTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGCAGGA
128 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGTAGCAGGA
* * *
2598343 TCAGCAACAGC-CAGAGGGGGACCCGGCTTACGCATCCCGCTCCTTCTTGCTGGCTAAGTGCCCG
193 TC-GCAACAGCACAAAGGGGGACCCGGCTTACGCATCCCGC-CCCTCTTGCTGGCTAAGCGCCCG
* * * *
2598407 CACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTC
256 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
2598472 ATTCCCAGTGAAT-GATCGGACCAGACCGAGGGCTGTGGCAGCACATGCTGGGTTCGGGCATGTG
321 ATTCCCAGTGAATAGATCGGACCGGACCGAGGGCTGTGGCAGCACATGCTGGGCTCGGGCATGTG
* *
2598536 CTGGTGCCATATTTTTCTTTGCCGGGGCACCATCGTCAGAGCATCACCGGAGCATCGCCGGAGAA
386 CTGGTGCCATATTTTTCTTCGCCGAGGCACCATCGTC---GCAT-A--GGAGCATCGCCGGAGAA
*
2598601 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGGCCGCGGGGGAGCGTGCGCACATGATG
445 CCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGGCCGCGGGGG-GTGTGCGCACATGATG
2598666 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
508 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2598731 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
573 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
2598796 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
638 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
2598861 TGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGTCCAAAAATCCTTCTGAAA
703 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCTGAAA
* *** ** *
2598926 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTCGAAAATCGTTTAAAATAGAAAAGGAGTCGTC
767 AAATTTTAAAAAAT-CTCAAATGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
2598991 TTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTCCAAGCCTTAAAA
830 TTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAA
* * *
2599052 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCCCGC
1 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
2599117 CTTGCGCATCCCACCCCTCTGGCCGG
66 CTTGCGCATCCCATCTCTCTGGCCGG
2599143 TTGAGTGCCC
Statistics
Matches: 1651, Mismatches: 185, Indels: 129
0.84 0.09 0.07
Matches are distributed among these distances:
885 94 0.06
886 4 0.00
887 2 0.00
888 2 0.00
889 175 0.11
890 73 0.04
891 5 0.00
892 3 0.00
893 2 0.00
895 3 0.00
897 2 0.00
900 1 0.00
901 45 0.03
902 14 0.01
903 328 0.20
904 117 0.07
908 1 0.00
910 2 0.00
912 1 0.00
913 1 0.00
914 6 0.00
915 346 0.21
916 223 0.14
917 3 0.00
918 198 0.12
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCGCTCGTTTAGTCGGTTGGCT
TAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGTAGCAGGATCG
CAACAGCACAAAGGGGGACCCGGCTTACGCATCCCGCCCCTCTTGCTGGCTAAGCGCCCGTACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTGAATAGATCGGACCGGACCGAGGGCTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCATATTTTTCTTCGCCGAGGCACCATCGTCGCATAGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCTGAAAAAATTTTAAAAAAT
CTCAAATGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGCCATTGTATGAATTTACAAGCCATAAAA
Found at i:2599232 original size:26 final size:26
Alignment explanation
Indices: 2599180--2599232 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2599170 GTTGACTTAG
*
2599180 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTATAA
*
2599206 GCATACGGAGTTCATTC-CTAGTATAA
1 GCATACAGAGTTCATTCTC-AGTATAA
2599232 G
1 G
2599233 ATCGTACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTATAA
Found at i:2602745 original size:26 final size:26
Alignment explanation
Indices: 2602716--2602768 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2602706 GTTGACTTAG
*
2602716 GCATTCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2602742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2602768 G
1 G
2602769 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2603583 original size:902 final size:903
Alignment explanation
Indices: 2601840--2607010 Score: 6592
Period size: 902 Copynumber: 5.8 Consensus size: 903
2601830 GTTGAGTTAG
* * * * * *
2601840 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
2601905 CTCAGGCATGCACTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGTCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
2601970 AGCTGACCGGCGGCATTGGGGTTCCGACGATCAGGTGGGTCGTGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGTCGTGGGGGTGTGCGCACATGATGTG
* *
2602035 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
2602100 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2602165 -GGGACACTTTTTTCAAATGGTCA-GAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTTG
* *
2602228 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2602293 ATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * **
2602358 GCGATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATCTCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
2602423 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGTTTACG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *** ***
2602488 CATCCCGTCTCTTTGGCCGGCGTAGTGTAGGCCCGTCCGCCTGTCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGC
* * *
2602553 TTAGGCATATGGAGTTCATTCCCAGTCAAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC
* *
2602618 AACAGTACACAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
780 AACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
* * *
2602683 ACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATTCGAAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
2602742 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGACAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
2602807 CTCAGGCATGTGCTTGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
2602872 ACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGTGGGTCGTGGGGGTGTGCGCACATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGTCGTGGGGGTGTGCGCACATGATGTG
* * * *
2602937 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTGTACCTCATCAAACCTGGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2603002 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2603067 GGGGACACTTTTTTCAATTGGTCAC-AAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTTG
* * ** *
2603131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTGTGAAATA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
2603196 A-TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * **
2603260 GCCATGAAATTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATCTCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
2603325 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTTGTG
585 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *** *
2603390 CATCCCGTCTCTTTGGCCGATGTAATGCCCGCCCGTACGCCCATTTGCTCGTTTCGTCAGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGC
* *
2603455 TTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC
** * * * * *
2603520 AACAGCACACAGAAAGGGACCCGGTCAATCCTCGACTTGCACATCCCGCCCCTTTGGCCGGTTGA
780 AACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
*
2603585 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
2603644 GCATACGGAGTTCATTCCCAATCTAGGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * * * *
2603709 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCATCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * *
2603774 ACCTGACCGACGGCATTAGGGTTTCGACGAT-TGGGGGTCCTGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGT-GGGGGTGTGCGCACATGATGTG
2603838 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2603903 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
2603968 GGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTTG
* * *** *
2604033 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACAGTTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * * *
2604098 ATTTTCCAAAATCCTGAACCTCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTGGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
2604163 GCCATGAAACTTCACGCGAAGGCTTAAGGGGCCATTGTATGATTTTACAAGCCATAAAAATGGAA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2604228 TT-GC-CATGCAGAAATATTAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTG
585 TTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
2604291 CG-ATCCCATCTCTCTGGTCGACATAGTACTCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTG
* * ** * *
2604355 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGTGTTATGATCGCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
* * * * ** * * * **
2604420 TCGATAGCACATAGAGTGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCTCTCTAGCCGACT
778 TCAACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTT
*
2604485 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTAC-AGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * * * * *
2604546 GCATACGGAGTTTATTCCCAGCCTAAGATC-GAATCGGACCGAAGGTTGCGATAGCACGTACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * *
2604610 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
** * * * * * *
2604675 AACCTGACCGGTGACATT-AGGTTCTGGCAATCAGGGGGG-C-TGGGGGGTGTGTGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGTCGT-GGGGGTGTGCGCACATGATG
* * *
2604737 TGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCCAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
2604802 ACACCCTCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTACCAGCAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2604867 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCA-AGTTTTTAGCTG-AATTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-AGAGTTTTTAGCTGAAATTTT
* ** * *
2604930 TTCATGCATGCCAAAAAAAATACAAGGATCAATTGTACCAAGCTTGGGGCCAAAACTCCTTCCGA
387 TT-GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * * *
2604995 AAATTTTTTTAAAAAATCCTGAACC-CTAAAAAGTTTAGAAAAT-AGTGAATAATAGAAAACGAG
451 AAA-AATTTTAAAAAATCCCGAACCGC-AAAAAGTTTTGAAAATCA-TGAAAAATAGAAAACGAG
* * **
2605058 TCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
2605123 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
578 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * *
2605188 GCTTGCGTATCCCGTCTCTCTGGCCGGTGTAGTG-CC-CAC--CAGCCCACCAGCTCGTTTCGTC
643 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTC
* * *
2605249 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAG
708 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAG
* * ** * *
2605314 CAGGAT-AGGCAGTATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTCG
773 CAGGATCA-ACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
2605378 TCGGTTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCT
837 CCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
2605443 AA
902 AA
* * * * *
2605445 CCATAAGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGCGACCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * ** *
2605510 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTAGGGTCACCATCACCGGAGCA-CTGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACCGGAG
* * *
2605574 AACCTGATCGACGGCATTTGGGTTCCGACGATCGGGAGGG-C-AGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGTCGTGGGGGTGTGCGCACATGATGT
* *
2605637 GTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2605702 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
2605767 TTGTGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTT
* **
2605832 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGG-CAAAACTCCTTAAGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** **
2605896 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
2605961 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
2606026 ATTGGCACGTACAAATATGAAGATGTGCTTAAACTCACCTACCACCCTATTGATCCA-GGACTTG
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-CTTG
* *** *
2606090 CGCATCCCGTCTCTCTGGTCGACGTAGTG--CTTTC--CCGCCCGCCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTG
* ** ** * * * *
2606151 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAAGGTTGCAGTAGGATGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
*** ** * * * * * * *
2606216 TCGGTAGCATGCGGAGGGGGACTCGGTCGA-CCGTCGGCTTGCACATCTCGCCCCACTGGACGGG
778 TCAACAGCACACAGAGGGGGACCCGGTCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGG-CCGG
* * * * *
2606280 TTGAGAGGCCGCACGCTCGTTTTGTGGGTTGAGTTAGGCATAC-AGAGTTAATTCCCAGTCTAA
841 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * *
2606343 GCAGACAGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
2606408 CTCGGGCATGTGCTAGTGGCTGCA-TTTTCTTCGTCGGTGCACCATCGTC---G-------GGA-
66 CTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *** * * *
2606461 AA-CTAACCGACGGCATTTAAG-TCTGACG-TC-GGGGGCCG-GGGGGTGT-CGCACGATGA-GG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGTGGGGGTGTGCGCAC-ATGATGT
** *
2606519 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG--GGCTATCCCTCAGCAACAACCT-GAAGAAC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-A-AACCTCG-AGAAC
* *
2606581 TCACACCCCCTTAAAGTGCATTTGGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT
256 TCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
2606645 GAAATGGGGTCACTTTTTTC-AATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAAGCTG-AAT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTT-AGCTGAAAT
* *
2606708 TTGTTTGTGCAAGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
384 TT-TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
2606773 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAG
448 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
*
2606838 TCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
2606903 AATGGCATTGCCATATAGAAATATAAAGATGTCCCTAAAACCCACCTA-CA-CCTATCGATCCAC
578 AATGGCATTGGCACATAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCAC
** * *
2606966 GGCTTGCCGCATCCTATCTCTCCTGACCGATGTAGTGCCCGCCCG
642 GGCTTG-CGCATCCCGTCTCT-CTGGCCGACGTAGTGCCCGCCCG
2607011 CTTCGTTTCG
Statistics
Matches: 3746, Mismatches: 469, Indels: 123
0.86 0.11 0.03
Matches are distributed among these distances:
880 11 0.00
881 38 0.01
882 188 0.05
883 197 0.05
884 24 0.01
885 6 0.00
886 17 0.00
887 2 0.00
888 3 0.00
895 1 0.00
896 5 0.00
897 319 0.09
898 163 0.04
899 538 0.14
900 34 0.01
901 433 0.12
902 1450 0.39
903 315 0.08
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCGTGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAATTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCA
ACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:2603654 original size:26 final size:26
Alignment explanation
Indices: 2603618--2603668 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2603608 GTTGACTTAG
*
2603618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2603644 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
2603669 GGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2607408 original size:26 final size:26
Alignment explanation
Indices: 2607372--2607424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2607362 GTTGGCTTAG
*
2607372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
2607398 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
2607424 G
1 G
2607425 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:2609444 original size:26 final size:26
Alignment explanation
Indices: 2609414--2609464 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2609404 TGACTTAGGC
*
2609414 ATACGAAGTTCATTCCCTGTCTAAGT
1 ATACGAAGTTCATTCCCAGTCTAAGT
2609440 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2609465 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:2611887 original size:4 final size:4
Alignment explanation
Indices: 2611862--2611895 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
2611852 CCGACGTAGT
* *
2611862 GCCC GCCT GCCC GCCT GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
2611896 TCGTTTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.68, G:0.26, T:0.06
Consensus pattern (4 bp):
GCCC
Found at i:2612111 original size:26 final size:26
Alignment explanation
Indices: 2612075--2612127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2612065 GTTGACTTAG
*
2612075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
2612101 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
2612127 G
1 G
2612128 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:2613009 original size:26 final size:26
Alignment explanation
Indices: 2612972--2613024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2612962 GTTGACTTAG
2612972 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
2612998 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
2613024 G
1 G
2613025 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:2614792 original size:26 final size:26
Alignment explanation
Indices: 2614761--2614813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2614751 GTTGACTTAG
* *
2614761 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2614787 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2614813 G
1 G
2614814 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2615225 original size:903 final size:902
Alignment explanation
Indices: 2611142--2619720 Score: 10909
Period size: 903 Copynumber: 9.6 Consensus size: 902
2611132 CGTACGCTTG
* *
2611142 TTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAACCATAC-AGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCA
* * * * * * * * *
2611206 GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATACTGGGCTCAGGCAAGTGTTGGTGCC
65 GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
2611271 ACATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGG
130 GCATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * *
2611336 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTTCTGGTACTTGG
194 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
2611401 CCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
259 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
2611466 AGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATG
324 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
2611531 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATGTTTTTGTGCATGACAACAAAAATAC
389 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATAC
2611596 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
* * *
2611661 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACAAGTCGTCTTGCCATGAAACTTCACGTGA
518 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
2611726 AGGCATAAGGGACCACTGTATGAATTTACAAGCCATCAAAATGGCATTGGCACACAGAAATATGA
583 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
** * *
2611791 AGATGTGCCTAAACCCACCTACC-TTCTATCGATCCACGGCTTGCGCATCCCATTTCTCTGGCCG
648 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
**
2611855 ACGTAGTGCCCGCCTGCCCGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCA
713 ACGTA------G--TG--C-CC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *** * * *
2611920 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAAAAAAGGTTGCCGCAGCAGGATCGGCAGCA
766 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCA
*** * * * * *
2611985 CGCAGA-GGGGACCCGATCGATCCATAGCTTCCACATCTCGCCCCTCTGGCCGGCTGAGAGCTCG
831 CGCAGAGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
2612049 CGCGCTCA
895 CACGCTCA
* * *
2612057 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * *
2612122 TCTAAGATCGGATCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCA
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
2612187 CATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
** * *
2612252 TTCCGGTGATTGGGGGGGTCGAGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
195 TTCCGACGATCGGGGGGGCCG-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
2612317 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCCCACTCCCTTAAAGAGCTTTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
2612382 GAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
2612447 GGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
2612512 AAGGATCACGTCTACCAAGTTTGGGGCCAAAGCACCTTCAGAAAAAATTTTAAAAAATC-CTGAA
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAA
* * *
2612576 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCATCTTGCCATGAAACTTCACGTG
517 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
2612641 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGAGAAATATG
582 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * **
2612706 AAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGTT
647 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
2612771 GACGTAGT----GCCCGCCCG-CCGCTCG-TC--TT-ATCGGTTGGCTTAGGCATACGGAGTTCA
712 GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
2612827 TTCCCAGTCTAAGATCAGATCGGA-TCAAGGGTTGCTGCAGCAAGATCGGCAGCAC-CTA-AGGG
777 TTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCAGCAGCAGGATCGGTAGCACGC-AGAGGG
*
2612889 GGACCTGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
840 GGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
** * * * *
2612953 TTTTAATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 -TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* *
2613018 GTCTAAGATCGGACCAGACCGAGGGTT-TCGACAGCACATGCTGGGCTGGGGCATGTGCTGGTGC
65 GTCTAAGATCGGACCAGACCGAGGGTTGT-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * * *
2613082 CGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGAAGAACCTGACCAGCGGCATTAG
129 CGCATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
** * ** * * *
2613147 GGTTCCGGTGATCGAGCAGGTCGGGGGGCTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
193 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
**
2613212 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
2613277 AAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *
2613342 GGTCGCAAAATCTTGTACACTTCGAGTTTTTGGCTAAATTTTTTTATGCAGGCCAACAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
2613407 TAGGATCACGTCTACGAAGTTTGGAGCCAAAACTCCTTTCGAAAAAATTTGAAAAAATCCCGAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
** *
2613472 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
518 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ** *
2613537 AGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA
583 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* *
2613602 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCG
648 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * * *
2613667 GCGTAGT--------GCCCTCTCACCCACTCGTTTCATCGGTTGGCCTAGGCATACGGAGTTCAT
713 ACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** ** *
2613724 TCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGA
778 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGA
* * * * * ** *
2613789 CCCGACCGATCCCTGACTTGCGTATCCCGCCCCTCTGGCCGACTGAGCACCCATACGCTCG
843 CCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * * * *
2613850 TTTCGTGGGTTCACTTAGGCACACGGAGTTCCTTCCCAGTTTAAGCATA-TAGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCA
* * *
2613914 GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
65 GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
2613979 GTATTTTTCTTGGCCGGGG---CA--C-----CATCGTCGGAGAACCTGACCGACGGCATT-GGG
130 GCATTTTTCTTCGCCGGGGCACCATCCTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * *
2614033 TTACGGCGATCGGGGGGGTCGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
195 TTCCGACGATCGGGGGGG-C-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2614098 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
*
2614163 GAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
323 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
2614228 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATACCAA-AAAAAAAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** *
2614292 AAGGATCACGTCTACCAAGCTTGGGGCCAAAA-TGATTTCCAAAAAAATTTTAAAAAATCTCGAA
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTCGAA
* ** * * *
2614356 CCGCAAAATTTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTG
517 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * **
2614421 AAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGTACATTGAAATATG
582 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * *
2614486 AAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCC
647 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * **
2614551 GACGTAGTGCCCGCCCGCCCGCCCGCTCACTCGTTTTGCCGGTTGGCTTAGGCATACTAAGTTCA
712 GACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** * * * *
2614616 TTCCCAATCTAACATCAGACCGGACTGAGGGTTGCAGCAGTAAAATTGGCAGCACGTAGAGAGGG
777 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGG
* * **
2614681 ACCCGAACTGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCC-GATGAGCGCCCATACGCTCA
842 ACCCG-AC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* *
2614743 TTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* *
2614808 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCG
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
2614873 CATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGTTGGAGAACTTGACCGGCAGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* *
2614938 TTCCGACGATCGGGGGGGCTGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
195 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * ** * *
2615003 CCTTATATTGACCCCTTATCCCTCATCAAACCGCGAGAACTGACACTCCCTTAAAGAGCATTTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * * * *
2615068 GATTTTATAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTAAAATGTGGAGACATTTTTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * ** *
2615133 TCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCAT-ATAATAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
2615197 GGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCAGAAAAAAATTTAAAAAATC-CTGAACC
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACC
* * * * * *
2615261 ATAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATCAAACTTTACGTGAC
519 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
2615326 GGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACGCAAAAATATGAA
584 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * * * * * * *
2615391 GAAGTGCCTAAACCCACCGACCACCCTATCAATCCACGGCTTGCACATTCCGTTTCTTTGGCCGG
649 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
2615456 CTTAGTGCCCACCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
714 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * ** *
2615521 TCCAATCTAAGATTGGATCAGAATGAGGGTTGCATTAGCAAGATCGGTAGCACGCA-AGGGGGAC
779 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGAC
* * * * * *
2615585 CTGACCGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCCGACTGAGCACCTGCACGCTCA
844 CCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
** * * *
2615645 TTTTAATGGGTTGACTTATGCATACAGAGTTCATTCCCGGTCTAAGCATACGAAGTTCATTCCCA
1 -TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* * *
2615710 GTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
65 GTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
2615775 GTATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTGGG
130 GCATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * * *
2615840 GTTACGGCGATCGGGGGGTTG-AGGGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTT
194 GTTCCGACGATCGGGGGG--GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
2615904 GGCCCTTATATTGGCCCCCTATCACTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATT
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
*
2615969 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
322 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
2616034 TGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTCCATGCCAAAAAAAATA
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
2616099 CAAGGATCACGTCTTCCAGGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
* * *
2616164 CCGTAAAAAGTTTCGAAGATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTG
517 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
2616229 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-CTAGAAATAT
582 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC-AGAAATAT
* * * *
2616293 GAAGATGTGCCGAAACCCACCTACCACCCTATCGATCAACGGCTTGTGCATCCCGTCTCTCTGGT
646 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * * * *
2616358 CGACATAGTGCCCGTCCGCCCGTCCGCCTGCTCATTTCGTCAGTTGGCTTAGTCATACGGAGGTC
711 CGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * * * *
2616423 ATTCCAAGTCTAAGATCAGACCAAACTGAGGGTTGCGGTAGTAGGATCGATAGCACACAGAGGGG
776 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGG
* * *
2616488 GATCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCA
841 GACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
2616551 TTTCGT-GG--G---T-----T---GA---C-TT---AG-----GCATACGAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * ** * *
2616590 TTTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCACGGCTCGAGCATGTGCTGGTGCCA
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
2616655 TATTTTTTTTCACCAGGCCACCAT-C----G---C-T-GGAGAACCTGACCGGCGGCATTGGGGT
131 CATTTTTCTTCGCCGGGGCACCATCCTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
** * *
2616710 TCCGGTGATCGGGGGGGCCGGGCGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
196 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
2616775 CTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCTTTAAAGAGCATTTTAG
261 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
2616840 ATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
326 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
2616905 CACAAAGTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAG
391 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
2616970 TATCACGTCTACCAAGTTTGTGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
456 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
* * * *
2617035 AAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTCGTCTAGCCGTGAAACTTCACGTAAAGG
521 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
2617100 CTTAAGGGACCATTGTATGAATTCACAAGCCAT-AAAATGGCATTGGCACACAGAAATATGAAGA
586 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * *
2617164 TGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGATG
651 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
2617229 TAGTGCCCG---G-CCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
716 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * *** * * *
2617290 CAGTCTAAGAT-AGGGCCGAACTGAGGGTTATGGCAGCAAGATTGGTAGCATGCAGAGGGGGACC
781 CAGTCTAAGATCA-GACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACC
* * ** * * * *
2617354 CGACTGATCCTCC-ACTTGCGCATCCCGCCTCTC-GGCTAGCTAAGCGGCTGCACGCTCT
845 CGAC-GATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * * *
2617412 TTTCGTGGTTTGACTT-GGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * * * * * * *
2617476 TATATGATCAGACCGGACTGAAGGTTGTGACAGCACATGCTGGGCTTGGTCTTGTGCTGGTGCCG
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* *** * * * * * *
2617541 CATTTTTCATCGCCAACGCACCATCGTCGGAGCATTGCCGGAGAACTTGACCAGCGGCATTAGGG
131 CATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
*
2617606 TTCCGACGATC-GGGGGGCC-GGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGC
195 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
2617669 CCTTAT-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2617733 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTATTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
2617798 TCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
2617863 GGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAACAAATTTTAAAAAATCTCGAACCG
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* *
2617928 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAG
520 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * ** *
2617993 GCTTATGGGACCATTGTATCAATTTACAAACCATAAAAATGGCATTGGAATGCAGAAATATAAAG
585 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * * * *
2618058 ATGTGCCTAAACCCAACTACCACTCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGGC
650 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * ** *
2618123 GTA-T---TGCCTGCCCGCCCGCCCGCTCGCTTCGTCGGATGGCTTAAGCATAAAGAGTTGATTC
715 GTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
2618184 CCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCAGCAGCAGGATTGGTAGCAAGCAGAGGGGGAC
780 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGAC
* * * * * * *
2618248 CTGGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCC
844 C-CGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* *
2618308 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCGAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * *
2618373 TCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCCCATGCTGGGTTCAGGCATGTGCTGGTGCCG
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
2618438 CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * *
2618503 TTCCGACGATCGGGGGGGCCGAGTGGGTGGGCGCACATGATGTGCGATGGATGCTGGTACTTGGC
195 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
**
2618568 CCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC-CCCCCTTAAAGAGCATTTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
2618631 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
** * *
2618696 TCACAAAAAATTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGCATGCCAATAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
2618761 GGATCCCGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACC
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACC
** ** *
2618825 ACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAA
519 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
2618890 GGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAGAAATATGAA
584 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* **
2618955 TATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGA
649 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* ** *
2619020 CGTAGTGCCCGCCCACCCTTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT
714 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
2619085 CCAAGTCTAAGATCGGACCGGA-TCACGAGTTGCAGTAGCAGGATTGGTAGCATGCAGAGGGGGA
779 CCCAGTCTAAGATCAGACCGGACTGA-GGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGA
* ** * * * * *
2619149 TCCGATCGATCTTCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACATGCTCG
843 CCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * * * **
2619210 TTTCATGGGTTGACTTAGGCACACGGAGTTTATTCCCAGTCTAAGCATACAAAGTTCATTCTGAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * * * * * * * *
2619275 TCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCCCATGCTGGGTTCAGGTAGGTGCTGGAGCCA
66 TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * * * *
2619340 TATTTTTCTTCGTCGGGGCACAATCACCGGAGTATCATCGGAGAATCTGATCGACAGCATTGGGG
131 CATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * * * *
2619405 TTCCGATGATCGGGGTGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTAGTACTTGGC
195 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
2619470 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAATTGA
260 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2619535 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGAACACTTTTTTCAAATGG
325 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
2619600 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATTCCAACAAAAATACAA
390 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *** * * *
2619665 GGATCACGTCGACCAAGTTTCCAGCCAAAACTCTTTCTGAAAAAATTTCAAAAAAT
455 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
2619721 GCCGAATCGC
Statistics
Matches: 6695, Mismatches: 841, Indels: 267
0.86 0.11 0.03
Matches are distributed among these distances:
861 28 0.00
862 118 0.02
863 2 0.00
864 1 0.00
866 98 0.01
867 374 0.06
868 40 0.01
869 1 0.00
870 1 0.00
871 1 0.00
873 1 0.00
874 2 0.00
877 1 0.00
878 2 0.00
879 98 0.01
881 2 0.00
884 18 0.00
885 269 0.04
886 300 0.04
887 2 0.00
888 1 0.00
890 1 0.00
891 7 0.00
892 4 0.00
893 247 0.04
894 360 0.05
895 712 0.11
896 377 0.06
897 450 0.07
898 384 0.06
899 81 0.01
900 10 0.00
901 42 0.01
902 418 0.06
903 755 0.11
904 419 0.06
905 359 0.05
906 59 0.01
909 1 0.00
911 1 0.00
915 187 0.03
916 232 0.03
917 229 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGCCGGGGCACCATCCTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
Found at i:2615693 original size:26 final size:26
Alignment explanation
Indices: 2615664--2615716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2615654 GTTGACTTAT
*
2615664 GCATAC-AGAGTTCATTCCCGGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
2615690 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2615716 G
1 G
2615717 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2619940 original size:26 final size:26
Alignment explanation
Indices: 2619910--2619962 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2619900 GTTGACTTAG
* *
2619910 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
2619936 GCATACGGAGCTCGTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
2619962 G
1 G
2619963 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:2620849 original size:26 final size:26
Alignment explanation
Indices: 2620813--2620865 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2620803 GTTGACTTAG
2620813 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2620839 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2620865 G
1 G
2620866 ATCAGACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2621654 original size:26 final size:26
Alignment explanation
Indices: 2621624--2621675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2621614 GTTGACTTAG
2621624 GCATACGGAGTTCATTCGC-AGTCTAA
1 GCATACGGAGTTCATTC-CTAGTCTAA
2621650 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2621676 TATCGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:2625066 original size:26 final size:26
Alignment explanation
Indices: 2625030--2625082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2625020 GTTGACTTAG
2625030 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2625056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2625082 G
1 G
2625083 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2627043 original size:59 final size:58
Alignment explanation
Indices: 2626859--2627201 Score: 406
Period size: 59 Copynumber: 5.8 Consensus size: 58
2626849 TTGTGTAGGA
* * **
2626859 AAAATTGATACCTTCAACTTTTCCCTAAAAATATTTTTTT-G-AAATTTATTTTTTAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTA-TTTCAAGG
* *
2626916 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTT-A-TTTCAAGG
2626976 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTATTTCAAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTATTTC-AAGG
* * * *
2627035 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA----TATTTTTTTGGAAAATTTA-TTTCAAGG
* * **
2627098 AAAATGGATACTTTCAACTTTTCCCTAAAAATA--TTTTTCAAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAA-TTT-A-TTTCAAGG
*
2627157 AAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
2627202 CTTTTGATTT
Statistics
Matches: 248, Mismatches: 24, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
57 46 0.19
58 8 0.03
59 80 0.32
60 55 0.22
62 7 0.03
63 49 0.20
64 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTATTTCAAGG
Found at i:2627134 original size:122 final size:118
Alignment explanation
Indices: 2626859--2627212 Score: 448
Period size: 122 Copynumber: 3.0 Consensus size: 118
2626849 TTGTGTAGGA
* **
2626859 AAAATTGATACCTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTA-TTTCAAGGAAAATTG
*
2626923 ATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTGGAAATTTTGATTTTCAAGG
65 ATACTTTCAACTTTTCCTCAAAAATTATTTTTTTGGAAAATTTGATTTTCAAGG
*
2626976 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAAATTTATTTCAAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAAATTTATTTC-AAGGAAAATT
* * *
2627041 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTGAAAATTT-ATTTTTAAGG
64 GATACTTTCAACTTTTCCTCAAAAAT---TATTTTTTTGGAAAATTTGATTTTCAAGG
* ** *
2627098 AAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCAAAAATTTTGATTTTCAAGGAAGAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAA-TTT-A-TTTCAAGGAAAAT
* **
2627162 TGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTTGGAACTTTTGATTTT
63 TGATACTTTCAACTTTTCCTCAAAAATTA-TTTTTTTGGAAAATTTGATTTT
2627213 TATTTAAAGA
Statistics
Matches: 207, Mismatches: 18, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
117 38 0.18
118 5 0.02
119 54 0.26
120 9 0.04
121 8 0.04
122 74 0.36
123 19 0.09
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTCAAGGAAAATTGA
TACTTTCAACTTTTCCTCAAAAATTATTTTTTTGGAAAATTTGATTTTCAAGG
Found at i:2627257 original size:16 final size:14
Alignment explanation
Indices: 2627233--2627292 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 14
2627223 AATAGAATAA
2627233 TAAAAAAATAAAAG
1 TAAAAAAATAAAAG
*
2627247 TGAAAATAAATAAAAA
1 T-AAAA-AAATAAAAG
*
2627263 TAAAAATAAAGAAAAG
1 T-AAAA-AAATAAAAG
2627279 TAAACAAAATAAAA
1 TAAA-AAAATAAAA
2627293 ATTAGGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 23 0.61
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.15
Consensus pattern (14 bp):
TAAAAAAATAAAAG
Found at i:2627292 original size:31 final size:33
Alignment explanation
Indices: 2627228--2627294 Score: 86
Period size: 31 Copynumber: 2.1 Consensus size: 33
2627218 AAAGAAATAG
*
2627228 AATAATAAAAAAATAAAAGTGAAAATAAATAAA
1 AATAATAAAAAAAGAAAAGTGAAAATAAATAAA
*
2627261 AATAA-AAATAAAGAAAAGT-AAACA-AAATAAA
1 AATAATAAAAAAAGAAAAGTGAAA-ATAAATAAA
2627292 AAT
1 AAT
2627295 TAGGTAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 13 0.42
32 13 0.42
33 5 0.16
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.16
Consensus pattern (33 bp):
AATAATAAAAAAAGAAAAGTGAAAATAAATAAA
Found at i:2627303 original size:25 final size:26
Alignment explanation
Indices: 2627259--2627308 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
2627249 AAAATAAATA
2627259 AAAATAAAAATAAAGAAAAG-TAAAC
1 AAAATAAAAATAAAGAAAAGATAAAC
* * *
2627284 AAAATAAAAATTAGGTAAAGATAAA
1 AAAATAAAAATAAAGAAAAGATAAA
2627309 AAATATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.72, C:0.02, G:0.10, T:0.16
Consensus pattern (26 bp):
AAAATAAAAATAAAGAAAAGATAAAC
Found at i:2628258 original size:21 final size:21
Alignment explanation
Indices: 2628228--2628268 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2628218 AATTAGAGAA
* *
2628228 GATAATAAAAAAATATTATAG
1 GATAAAAAAAAAATAATATAG
*
2628249 GATAAAAAAATAATAATATA
1 GATAAAAAAAAAATAATATA
2628269 TAAATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (21 bp):
GATAAAAAAAAAATAATATAG
Found at i:2628271 original size:18 final size:19
Alignment explanation
Indices: 2628232--2628285 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
2628222 AGAGAAGATA
*
2628232 ATAAAAAAAT-ATTATAGG
1 ATAAAAAAATAATAATAGG
*
2628250 ATAAAAAAATAATAATA-T
1 ATAAAAAAATAATAATAGG
*
2628268 ATAAATAAATAAATAATA
1 ATAAAAAAAT-AATAATA
2628286 AATACATAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.61
19 12 0.39
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
ATAAAAAAATAATAATAGG
Done.