Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 18 of 129
Found at i:2628332 original size:12 final size:12
Alignment explanation
Indices: 2628302--2628330 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
2628292 TAGGATATAC
2628302 ATAAAATATAAA
1 ATAAAATATAAA
2628314 ATAAAATA-AAA
1 ATAAAATATAAA
2628325 ATAAAA
1 ATAAAA
2628331 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:2628506 original size:9 final size:10
Alignment explanation
Indices: 2628487--2628520 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
2628477 CAACTCAACA
2628487 TTTTCATTTT
1 TTTTCATTTT
2628497 TTTTCATTTT
1 TTTTCATTTT
**
2628507 TTTTTGTTTT
1 TTTTCATTTT
2628517 TTTT
1 TTTT
2628521 TTTTTACCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.85
Consensus pattern (10 bp):
TTTTCATTTT
Found at i:2628619 original size:18 final size:18
Alignment explanation
Indices: 2628596--2628637 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
2628586 AATAGAGGTA
2628596 ACTTTTTTTCATTTTTTT
1 ACTTTTTTTCATTTTTTT
**
2628614 ACTTTTTTTGTTTTTTTT
1 ACTTTTTTTCATTTTTTT
*
2628632 GCTTTT
1 ACTTTT
2628638 CTTTTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.79
Consensus pattern (18 bp):
ACTTTTTTTCATTTTTTT
Found at i:2628728 original size:1 final size:1
Alignment explanation
Indices: 2628722--2628763 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
2628712 ATAGAGGTAA
* * *
2628722 TTTTTTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2628764 AAATAATCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (1 bp):
T
Found at i:2628738 original size:9 final size:9
Alignment explanation
Indices: 2628724--2628763 Score: 73
Period size: 9 Copynumber: 4.6 Consensus size: 9
2628714 AGAGGTAATT
2628724 TTTTTTTTG
1 TTTTTTTTG
2628733 TTTTTTTTG
1 TTTTTTTTG
2628742 TTTTTTTTG
1 TTTTTTTTG
2628751 TTTTTTTT-
1 TTTTTTTTG
2628759 TTTTT
1 TTTTT
2628764 AAATAATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.16
9 26 0.84
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2628805 original size:118 final size:118
Alignment explanation
Indices: 2628504--2628869 Score: 517
Period size: 118 Copynumber: 3.1 Consensus size: 118
2628494 TTTTTTTCAT
* * * *
2628504 TTTTTTTTGTTTTTTTTTTTT---TACCAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGAGAA
1 TTTTTTTTGTTTTTTTTTTTTAAATATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAA
2628566 ACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTTCATTTTTTTACTTTTTTTG
66 ACATAAATAAAGCTCCTCTAAATAGAGGTAAC--TTTTT-ATTTTTTT--TTTTTTTG
* * *
2628624 TTTTTTTTGCTTTTCTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAG
1 TTTTTTTTGTTTTTTTTTTTTAAA-T-ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAG
* *
2628689 AAACATAAACAAAGCTCCTCTAAATAGAGGTAA-TTTTT-TTTTTGTTTTTTTTG
64 AAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTATTTTTTTTTTTTTTG
2628742 TTTTTTTTGTTTTTTTTTTTTTAAATAATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAG
1 TTTTTTTTG-TTTTTTTTTTTTAAAT-ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAG
* *
2628807 AAACATAAATGAAGCTCCTCTAAATAGAGGTAACTTTTTGTTTTTTTTTTTTTTG
64 AAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTATTTTTTTTTTTTTTG
2628862 TTTTTTTT
1 TTTTTTTT
2628870 TAAAAGCTCC
Statistics
Matches: 222, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
118 86 0.39
119 18 0.08
120 47 0.21
122 5 0.02
124 1 0.00
125 65 0.29
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.48
Consensus pattern (118 bp):
TTTTTTTTGTTTTTTTTTTTTAAATATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAA
ACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTATTTTTTTTTTTTTTG
Found at i:2628861 original size:15 final size:15
Alignment explanation
Indices: 2628841--2628870 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2628831 TAGAGGTAAC
2628841 TTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
2628856 TTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
2628871 AAAAGCTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (15 bp):
TTTTTGTTTTTTTTT
Found at i:2628891 original size:100 final size:98
Alignment explanation
Indices: 2628736--2628932 Score: 229
Period size: 100 Copynumber: 2.0 Consensus size: 98
2628726 TTTTTTGTTT
* * *
2628736 TTTTTGTTTTTTTTGTTTTTTTTTTTTTAAATAATCAAAGCTCCTCTAAGCAGAGGCTCAATGAC
1 TTTTTGTTTTTTTTGTTTTTTTTTTTTT--AT-ATAAAAGCTCCTCTAAACAGAGGCTCAACGAC
*
2628801 TTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGTAAC
63 TTTG-GAAA-ATAAAT--AGCTCCTCTAAACAGAGGTAAC
* *
2628841 TTTTTGTTTTTTTT-TTTTTTGTTTTTTT-T-TAAAAGCTCCTCTAAATAGAGGCTCGACGACTT
1 TTTTTGTTTTTTTTGTTTTTT-TTTTTTTATATAAAAGCTCCTCTAAACAGAGGCTCAACGACTT
* *
2628903 TGGAAAGTAAATTGCTCCTCTAAACAGAGG
65 TGGAAAATAAATAGCTCCTCTAAACAGAGG
2628933 CACCACGACT
Statistics
Matches: 83, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
96 16 0.19
98 5 0.06
99 4 0.05
100 30 0.36
102 1 0.01
104 6 0.07
105 21 0.25
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.43
Consensus pattern (98 bp):
TTTTTGTTTTTTTTGTTTTTTTTTTTTTATATAAAAGCTCCTCTAAACAGAGGCTCAACGACTTT
GGAAAATAAATAGCTCCTCTAAACAGAGGTAAC
Found at i:2628967 original size:42 final size:42
Alignment explanation
Indices: 2628875--2629063 Score: 290
Period size: 42 Copynumber: 4.5 Consensus size: 42
2628865 TTTTTTAAAA
* * * *
2628875 GCTCCTCTAAATAGAGGCTCGACGACTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
2628916 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
2628958 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
2629000 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
2629042 GCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCA
2629064 AATTGCTCCT
Statistics
Matches: 134, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
41 26 0.19
42 108 0.81
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:2629066 original size:26 final size:26
Alignment explanation
Indices: 2629037--2629089 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2629027 TTGAGAAAGT
2629037 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
2629063 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
2629089 A
1 A
2629090 CGACTTTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.19
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:2629111 original size:28 final size:28
Alignment explanation
Indices: 2629045--2629124 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
2629035 GTAAATTGCT
* * *
2629045 CCTCTAAACAGAGGCACCA--AATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTCC
2629071 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
2629099 CCTCTAAATAGAGGTACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
2629125 GGAAAGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 19 0.40
28 28 0.60
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:2629164 original size:41 final size:42
Alignment explanation
Indices: 2629099--2629183 Score: 136
Period size: 41 Copynumber: 2.0 Consensus size: 42
2629089 ACGACTTTCC
* *
2629099 CCTCTAAATAGAGGTACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
*
2629140 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
2629182 CC
1 CC
2629184 CTGACAATCA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 20 0.50
42 20 0.50
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:2629489 original size:43 final size:42
Alignment explanation
Indices: 2629383--2629519 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
2629373 TGAAAGATCC
** * *
2629383 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
2629426 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
2629469 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
2629512 TCATTTGA
1 TCATTTGA
2629520 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:2629751 original size:22 final size:22
Alignment explanation
Indices: 2629703--2629761 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
2629693 GGTTTCACTC
2629703 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
2629726 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
2629747 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
2629762 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:2630851 original size:10 final size:10
Alignment explanation
Indices: 2630838--2630885 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
2630828 TTTTTTTTCA
2630838 TTTTCTCATT
1 TTTTCTCATT
*
2630848 TTTT-TCTTT
1 TTTTCTCATT
2630857 TTTTCTCATT
1 TTTTCTCATT
* *
2630867 TTTTTTCTTT
1 TTTTCTCATT
*
2630877 TTTTTTCAT
1 TTTTCTCAT
2630886 CATCTTCTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTCTCATT
Found at i:2630877 original size:19 final size:19
Alignment explanation
Indices: 2630828--2630879 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
2630818 AATTTGAATC
*
2630828 TTTTTTTTC-ATTTTCTCA
1 TTTTTTTTCTTTTTTCTCA
2630846 -TTTTTTTCTTTTTTTCTCA
1 TTTTTTTTC-TTTTTTCTCA
2630865 TTTTTTTTCTTTTTT
1 TTTTTTTTCTTTTTT
2630880 TTTCATCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.27
19 14 0.47
20 8 0.27
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTTTCTTTTTTCTCA
Found at i:2634944 original size:59 final size:60
Alignment explanation
Indices: 2634865--2635007 Score: 191
Period size: 59 Copynumber: 2.4 Consensus size: 60
2634855 ATCCCCTTTT
* * *
2634865 TTTTTTTTGAAAATTT-ATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATA
1 TTTTTTTAGAAATTTTGATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA
* * *
2634924 -TTTTTTAGAAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAATA
1 TTTTTTTAGAAATTTTGATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA
* *
2634983 TTTTTTTTGGAACTTTTGATTTTTA
1 -TTTTTTTAGAAATTTTGATTTTTA
2635008 TTTAAAGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
58 13 0.18
59 39 0.54
61 20 0.28
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48
Consensus pattern (60 bp):
TTTTTTTAGAAATTTTGATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA
Found at i:2635036 original size:6 final size:6
Alignment explanation
Indices: 2635015--2635114 Score: 66
Period size: 6 Copynumber: 16.7 Consensus size: 6
2635005 TTATTTAAAG
* *
2635015 AAAATA GAATAATA AAAAT- -AAATA AAAGTG AAAAT- -AAATA AAAATA
1 AAAATA -AA-AATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * *
2635061 AAAATA AAAATA AAGAAAA GTAAAACA AAAATA AAAAT- AAGATA AAGATA
1 AAAATA AAAATA AA-AATA --AAAATA AAAATA AAAATA AAAATA AAAATA
2635111 AAAA
1 AAAA
2635115 ATATTAAATA
Statistics
Matches: 76, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
4 8 0.11
5 4 0.05
6 48 0.63
7 7 0.09
8 7 0.09
9 2 0.03
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:2635050 original size:16 final size:16
Alignment explanation
Indices: 2635025--2635114 Score: 92
Period size: 16 Copynumber: 5.5 Consensus size: 16
2635015 AAAATAGAAT
2635025 AATAAAAATAAATAAA
1 AATAAAAATAAATAAA
* *
2635041 AGTGAAAATAAATAAA
1 AATAAAAATAAATAAA
2635057 AATAAAAATAAA-AATA
1 AATAAAAATAAATAA-A
* * *
2635073 AAGAAAAGTAAAACAAA
1 AATAAAAAT-AAATAAA
2635090 AATAAAAATAAGATAAA
1 AATAAAAATAA-ATAAA
*
2635107 GATAAAAA
1 AATAAAAA
2635115 ATATTAAATA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
15 2 0.03
16 34 0.57
17 22 0.37
18 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.16
Consensus pattern (16 bp):
AATAAAAATAAATAAA
Found at i:2635051 original size:12 final size:11
Alignment explanation
Indices: 2635025--2635187 Score: 74
Period size: 10 Copynumber: 14.7 Consensus size: 11
2635015 AAAATAGAAT
2635025 AATAAAAAT-A
1 AATAAAAATAA
*
2635035 AATAAAAGTGAA
1 AATAAAAAT-AA
*
2635047 AATAAATA-AA
1 AATAAAAATAA
2635057 AATAAAAATAAA
1 AATAAAAAT-AA
*
2635069 AATAAAGA-AA
1 AATAAAAATAA
*
2635079 AGTAAAACA-AA
1 AATAAAA-ATAA
2635090 AATAAAAATAA
1 AATAAAAATAA
* *
2635101 GATAAAGAT-A
1 AATAAAAATAA
* *
2635111 AA-AAATATTA
1 AATAAAAATAA
*
2635121 AATAAAACCTAA
1 AATAAAA-ATAA
*
2635133 TCTAATAAATATAA
1 ---AATAAAAATAA
*
2635147 AA-ACAAATAA
1 AATAAAAATAA
2635157 AATAAAAA-ATA
1 AATAAAAATA-A
2635168 AATAAACAA-ATA
1 AATAAA-AATA-A
2635180 AATAAAAA
1 AATAAAAA
2635188 AATTCAAAAA
Statistics
Matches: 118, Mismatches: 20, Indels: 29
0.71 0.12 0.17
Matches are distributed among these distances:
9 5 0.04
10 39 0.33
11 36 0.31
12 29 0.25
14 3 0.03
15 6 0.05
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:2635059 original size:22 final size:21
Alignment explanation
Indices: 2635015--2635114 Score: 85
Period size: 22 Copynumber: 4.5 Consensus size: 21
2635005 TTATTTAAAG
2635015 AAAATAGAATAATAAAAATAAATA
1 AAAATA-AA-AATAAAAA-AAATA
* *
2635039 AAAGTGAAAATAAATAAAAATA
1 AAAATAAAAATAAA-AAAAATA
*
2635061 AAAATAAAAATAAAGAAAAGT-
1 AAAATAAAAATAAA-AAAAATA
*
2635082 AAAACAAAAATAAAAATAAGATA
1 AAAATAAAAATAAAAA-AA-ATA
*
2635105 AAGATAAAAA
1 AAAATAAAAA
2635115 ATATTAAATA
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
20 2 0.03
21 15 0.24
22 29 0.47
23 12 0.19
24 4 0.06
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (21 bp):
AAAATAAAAATAAAAAAAATA
Found at i:2635106 original size:38 final size:38
Alignment explanation
Indices: 2635015--2635187 Score: 120
Period size: 38 Copynumber: 4.4 Consensus size: 38
2635005 TTATTTAAAG
* * *
2635015 AAAATAGAATAATAAAAATAAATAAAAGTGAAAATAAATA
1 AAAATA-AA-AATAAAAATAAAGAAAAGTAAAAAAAAATA
2635055 AAAATAAAAATAAAAATAAAGAAAAGTAAAACAAAAATA
1 AAAATAAAAATAAAAATAAAGAAAAGTAAAA-AAAAATA
* * * **
2635094 AAAAT-AAGATAAAGATAAA-AAATATTAAATAAAACCTA
1 AAAATAAAAATAAAAATAAAGAAA-AGTAAA-AAAAAATA
* * * *
2635132 ATCTAATAAATATAAAAACAAATAAAA-TAAAAAATAAATA
1 A--AAATAAAAATAAAAATAAAGAAAAGTAAAAAA-AAATA
*
2635172 AACAA-ATAAATAAAAA
1 AA-AATAAAAATAAAAA
2635188 AATTCAAAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
37 3 0.03
38 53 0.50
39 19 0.18
40 17 0.16
41 12 0.11
42 3 0.03
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.18
Consensus pattern (38 bp):
AAAATAAAAATAAAAATAAAGAAAAGTAAAAAAAAATA
Found at i:2635165 original size:16 final size:17
Alignment explanation
Indices: 2635139--2635173 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
2635129 CTAATCTAAT
2635139 AAATATAAAAACAAATA
1 AAATATAAAAACAAATA
*
2635156 AAATA-AAAAATAAATA
1 AAATATAAAAACAAATA
2635172 AA
1 AA
2635174 CAAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AAATATAAAAACAAATA
Found at i:2635190 original size:12 final size:12
Alignment explanation
Indices: 2635010--2635190 Score: 58
Period size: 12 Copynumber: 14.8 Consensus size: 12
2635000 GATTTTTATT
2635010 TAAAGAAAATAGAA
1 TAAA-AAAATA-AA
2635024 TAATAAAAATAAA
1 TAA-AAAAATAAA
**
2635037 TAAAAGTGA-AAA
1 TAAAA-AAATAAA
*
2635049 T-AAATAA-AAA
1 TAAAAAAATAAA
2635059 TAAAAATAA-AAA
1 TAAAAA-AATAAA
2635071 TAAAGAAAAGTAAA
1 TAAA-AAAA-TAAA
*
2635085 -ACAAAAATAAA
1 TAAAAAAATAAA
* *
2635096 -AATAAGATAAAGA
1 TAAAAAAAT-AA-A
2635109 TAAAAAATATTAAA
1 TAAAAAA-A-TAAA
**
2635123 T-AAAACCT-AA
1 TAAAAAAATAAA
* *
2635133 TCTAATAAATATAA
1 T-AAAAAAATA-AA
*
2635147 -AAACAAATAAA
1 TAAAAAAATAAA
2635158 -ATAAAAAATAAA
1 TA-AAAAAATAAA
*
2635170 TAAACAAATAAA
1 TAAAAAAATAAA
2635182 TAAAAAAAT
1 TAAAAAAAT
2635191 TCAAAAAAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
10 9 0.07
11 19 0.15
12 60 0.47
13 16 0.12
14 20 0.16
15 4 0.03
16 1 0.01
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.19
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:2635190 original size:24 final size:24
Alignment explanation
Indices: 2635139--2635188 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
2635129 CTAATCTAAT
2635139 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAATAAAATAAA
2635163 AAATA-AATAAACAAAT-AAATAAA
1 AAATATAA-AAACAAATAAAATAAA
2635186 AAA
1 AAA
2635189 ATTCAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (24 bp):
AAATATAAAAACAAATAAAATAAA
Found at i:2636077 original size:6 final size:6
Alignment explanation
Indices: 2636066--2636199 Score: 54
Period size: 6 Copynumber: 20.0 Consensus size: 6
2636056 TATAGGATAA
*
2636066 AAAAAT AAAAAT AAAAAT ATATAATT AAATAAAT AAAAAT ACAAAAAT
1 AAAAAT AAAAAT AAAAAT A-A-AAAT -AA-AAAT AAAAAT --AAAAAT
* * * ** * *
2636114 AAATAT ATATATT ATTAAT AATAAAT AAATAAT AAATACAT AGGATAT
1 AAAAAT A-AAAAT AAAAAT AA-AAAT AAA-AAT AAA-A-AT A-AAAAT
2636162 ACATAAAT ATAAAAT -AAAAT AAAAAT AAAAAT AAAAAT
1 A-A-AAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT
2636200 GATAAAGATA
Statistics
Matches: 100, Mismatches: 16, Indels: 24
0.71 0.11 0.17
Matches are distributed among these distances:
5 5 0.05
6 45 0.45
7 26 0.26
8 22 0.22
9 2 0.02
ACGTcount: A:0.69, C:0.02, G:0.01, T:0.27
Consensus pattern (6 bp):
AAAAAT
Found at i:2636079 original size:32 final size:29
Alignment explanation
Indices: 2636007--2636114 Score: 80
Period size: 30 Copynumber: 3.6 Consensus size: 29
2635997 AATAAAAATC
* *
2636007 AAATAAATAAAAAAATAATAGATAATTAGAAA
1 AAATAAA-AATAAAA-AATATATAATTA-AAA
* *
2636039 AGAT-AATA-AAAAAATATTATAGGA-TAAAA
1 AAATAAAAATAAAAAATA-TATA--ATTAAAA
*
2636068 AAATAAAAAT-AAAAATATATAATTAAAT
1 AAATAAAAATAAAAAATATATAATTAAAA
2636096 AAATAAAAATACAAAAATA
1 AAATAAAAATA-AAAAATA
2636115 AATATATATA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
27 1 0.02
28 18 0.29
29 17 0.27
30 20 0.32
31 3 0.05
32 3 0.05
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.23
Consensus pattern (29 bp):
AAATAAAAATAAAAAATATATAATTAAAA
Found at i:2636081 original size:14 final size:14
Alignment explanation
Indices: 2636062--2636116 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
2636052 ATATTATAGG
2636062 ATAAAAAAATAAAA
1 ATAAAAAAATAAAA
* *
2636076 ATAAAAATATATAA
1 ATAAAAAAATAAAA
* *
2636090 TTAAATAAATAAAA
1 ATAAAAAAATAAAA
*
2636104 ATACAAAAATAAA
1 ATAAAAAAATAAA
2636117 TATATATATT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (14 bp):
ATAAAAAAATAAAA
Found at i:2636106 original size:28 final size:27
Alignment explanation
Indices: 2636007--2636104 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 27
2635997 AATAAAAATC
* *
2636007 AAATAAATAAAAAAATAATAGATAATT
1 AAATAAATAAAAAAAAAATATATAATT
*
2636034 AGAA-AAGATAATAAAAAAATATTATAGGA-T
1 A-AATAA-ATAAAAAAAAAATA-TATA--ATT
*
2636064 AAAAAAATAAAAATAAAAATATATAATT
1 AAATAAATAAAAA-AAAAATATATAATT
2636092 AAATAAATAAAAA
1 AAATAAATAAAAA
2636105 TACAAAAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
27 4 0.07
28 27 0.47
29 15 0.26
30 11 0.19
31 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (27 bp):
AAATAAATAAAAAAAAAATATATAATT
Found at i:2636112 original size:36 final size:40
Alignment explanation
Indices: 2636062--2636196 Score: 108
Period size: 42 Copynumber: 3.5 Consensus size: 40
2636052 ATATTATAGG
* *
2636062 ATAAAAAAATAAAAATAAA-A-ATATATAATT-A-AATAA
1 ATAAAAATACAAAAATAAATATATATATAATTAATAATAA
*
2636098 ATAAAAATACAAAAATAAATATATATATTATTAATAATAA
1 ATAAAAATACAAAAATAAATATATATATAATTAATAATAA
* * *
2636138 ATAAATAATA-AATACATAGGATATACATA-AATATAA-AATAAA
1 ATAAA-AATACAA-AAATA-AATATATATATAAT-TAATAAT-AA
2636180 ATAAAAAT--AAAAATAAA
1 ATAAAAATACAAAAATAAA
2636197 AATGATAAAG
Statistics
Matches: 81, Mismatches: 9, Indels: 16
0.76 0.08 0.15
Matches are distributed among these distances:
36 17 0.21
37 1 0.01
38 10 0.12
39 5 0.06
40 14 0.17
41 16 0.20
42 18 0.22
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.27
Consensus pattern (40 bp):
ATAAAAATACAAAAATAAATATATATATAATTAATAATAA
Found at i:2636118 original size:34 final size:32
Alignment explanation
Indices: 2636066--2636151 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 32
2636056 TATAGGATAA
*
2636066 AAAAAT-AAAAATAAAAATATATAATTAAATAAAT
1 AAAAATAAAAAATAAATATATAT-ATT--ATAAAT
*
2636100 AAAAATACAAAAATAAATATATATATTATTAAT
1 AAAAATA-AAAAATAAATATATATATTATAAAT
*
2636133 AATAAATAAATAATAAATA
1 AA-AAATAAAAAATAAATA
2636152 CATAGGATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
33 17 0.37
34 11 0.24
35 3 0.07
36 15 0.33
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (32 bp):
AAAAATAAAAAATAAATATATATATTATAAAT
Found at i:2636210 original size:15 final size:13
Alignment explanation
Indices: 2636166--2636212 Score: 53
Period size: 12 Copynumber: 3.6 Consensus size: 13
2636156 GGATATACAT
*
2636166 AAATATAAA-ATA
1 AAATAAAAATATA
2636178 AAATAAAAATA-A
1 AAATAAAAATATA
2636190 AAATAAAAATGATA
1 AAATAAAAAT-ATA
2636204 AAGATAAAA
1 AA-ATAAAA
2636213 TTGGACCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 19 0.63
13 2 0.07
14 3 0.10
15 6 0.20
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (13 bp):
AAATAAAAATATA
Found at i:2636567 original size:26 final size:25
Alignment explanation
Indices: 2636537--2636588 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
2636527 GTTGGCTTAG
2636537 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
2636563 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
2636588 G
1 G
2636589 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:2639428 original size:723 final size:719
Alignment explanation
Indices: 2638015--2639510 Score: 2228
Period size: 723 Copynumber: 2.1 Consensus size: 719
2638005 AACGCCCACA
* * * *
2638015 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * *
2638080 AGGGTTGCGGCAACACATGCTGGGTTCGAGCATGTGCTGGTGCGGCATTTTCTTCACCGGGGCAC
66 AGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCAGAATTTTCTTCACCGGGGCAC
* * * *
2638145 CATCACCGGAGTATCGTCAGAGAACCTGACAGGCGGAATTGGGGTTACAACAATCGAGGGGGCCG
131 CATCACCAGAGCATCGCCAGAGAACCTGACAGACGGAATTGGGGTTACAACAATCGAGGGGGCCG
2638210 AAGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 AAGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
2638275 CCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
2638340 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTACACTT
* * * *
2638405 CGAGTTTTTAGCTGATTTTTTTTGTGCATGCTAGCAAAAATACAAGGATCACGTCTACCAAGTTT
391 CGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * * *
2638470 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAATCGTAAAAGGTTTTGAAAATCGT
456 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAAGAACCGCAAAAAGTTTTGAAAATCGT
*
2638535 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATG
2638600 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAC
* * *
2638665 CACCCTATTGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCTGCGTAATGCCCGTCCGTCCGCC
651 CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGT-A-G--CGTCCGCCCGCC
2638730 TA-CCCGCC
712 -AGCCCGCC
* *
2638738 CGCTCGTTTCGTCGGTGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
2638803 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATAATTTTCTTCGCCGGTGCA
66 AGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTG-CAGAATTTTCTTCACCGGGGCA
* * * * * * * ***
2638868 GCATCGCTAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTAATCG-GAGGGGC
130 CCATCACCAGAGCATCGCCAGAGAACCTGACAGACGGAATTGGGGTTACAACAATCGAG-GGGGC
* * * ** *
2638932 CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTGCTTGTATTGGCCCCCTA
194 CGAAGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** *
2638996 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
259 TCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
* *
2639061 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTACAC
* *
2639126 TTTGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGT-TGACCAAG
389 TTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCT-ACCAAG
* * *
2639190 TTTGGGGCCAACAA-TCCTTTCGAAAAAATTTTACAAAATCAAGAACCGCAAAAAGTTTTGAAAA
453 TTTGGGGCCAA-AACTCCTTCCAAAAAAATTTTAAAAAATCAAGAACCGCAAAAAGTTTTGAAAA
2639254 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTG
517 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTG
* * ** *
2639319 TATGAATTTACTAGCCGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
582 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCAC
* * * * **
2639384 CTACCACCCTATCGATCCACGGCTTGTGCATCCCTTCTCTCTGGCCGGCGTAGTGTTTGCCCGCC
647 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGCGTCCGCCCGCC
2639449 AGCCCGCC
712 AGCCCGCC
* ** *
2639457 CGATCGTTTCGTCGGTTGGCTTAGGCGCACGGAGTTCATTCCTAGTCTAAGATC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
2639511 AAGCCGGATC
Statistics
Matches: 695, Mismatches: 73, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
718 1 0.00
719 63 0.09
721 1 0.00
722 2 0.00
723 559 0.80
724 69 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (719 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCAGAATTTTCTTCACCGGGGCAC
CATCACCAGAGCATCGCCAGAGAACCTGACAGACGGAATTGGGGTTACAACAATCGAGGGGGCCG
AAGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCAAGAACCGCAAAAAGTTTTGAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGCGTCCGCCCGCCAGCC
CGCC
Found at i:2639669 original size:26 final size:26
Alignment explanation
Indices: 2639640--2639692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2639630 GTTGACTTAG
* *
2639640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
2639666 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
2639692 G
1 G
2639693 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:2641047 original size:718 final size:720
Alignment explanation
Indices: 2639666--2641132 Score: 2267
Period size: 718 Copynumber: 2.0 Consensus size: 720
2639656 CCCAGTCTAA
* * **
2639666 GCATACGAAGTTCATTACCAGTCTAAGATCAGACCGGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2639731 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACCGGAGA
* *
2639796 ACCTAATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
2639861 CGATGGGTACTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTACTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2639926 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGAATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
** * *
2639991 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGTCGATTTTTTTTT
326 AAGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGTCGATTTTGTTTT
*
2640056 GTGCATGCCAGAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTCTGAAAA
391 GTGCATGCCAGAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTCTGAAAA
*** * *
2640121 AATTTTAAAAAATTTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
456 AATTTTAAAAAATTCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCT
*
2640186 TGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
521 TGCCATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCACAAAAATGGC
* ** * * *
2640251 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
586 ATTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
** * * * *
2640316 GCATCTGGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCTGCCCACTCGTTTCATCGGTTGG
651 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCATCGGCTGG
2640381 CTTAG
716 CTTAG
* * * * *
2640386 GCATACGGAGTTGATTCCCAGTGTAAGATCGGATCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
2640451 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCGCCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACCGGAGA
* * *
2640516 ACCTGACCGACGGCATT-GGGTTCTGACGATCGGGGGGGTCGAGGGGGTGTGCGCACATGATGTG
131 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * * *
2640580 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTACTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2640645 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGAATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
* * *
2640710 AAGGATACATTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAG-CTGATTTTGTTT
326 AAGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGTC-GATTTTGTTT
* * *
2640774 T-TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACTCCTTCTGAA
390 TGTGCATGCCAGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTCTGAA
2640837 AAAATTTTAAAAAATTCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCT
454 AAAATTTTAAAAAATTCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCT
* * *
2640902 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAATTG
519 CTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCACAAAAATG
*
2640967 GCATTAGCACACAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTT
584 GCATTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * * *
2641032 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGCCCGCTTGTTTCGTCGGCT
649 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCATCGGCT
2641097 GGCTTAG
714 GGCTTAG
*
2641104 GTATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
2641133 TGGACCAGAT
Statistics
Matches: 674, Mismatches: 71, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
717 1 0.00
718 322 0.48
719 222 0.33
720 129 0.19
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (720 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCACCGGAGA
ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTACTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGAATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
AAGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGTCGATTTTGTTTT
GTGCATGCCAGAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACTTCTGAAAA
AATTTTAAAAAATTCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCT
TGCCATGAAACCTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCACAAAAATGGC
ATTAGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCATCGGCTGG
CTTAG
Found at i:2641299 original size:26 final size:26
Alignment explanation
Indices: 2641263--2641315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2641253 GTTGACTTAG
* *
2641263 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACACTCTAA
2641289 GCATACAGAGTTCATTCACACTCTAA
1 GCATACAGAGTTCATTCACACTCTAA
2641315 G
1 G
2641316 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACACTCTAA
Found at i:2642163 original size:26 final size:26
Alignment explanation
Indices: 2642126--2642176 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2642116 TGACTTAGGT
*
2642126 ATACGGAATTCATTCCCAGTCTAAGC
1 ATACGGAATTCATTCCCAGCCTAAGC
*
2642152 ATACGGAGTTCATTCCCAGCCTAAG
1 ATACGGAATTCATTCCCAGCCTAAG
2642177 ATAGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGCCTAAGC
Found at i:2643559 original size:710 final size:712
Alignment explanation
Indices: 2642150--2643891 Score: 2497
Period size: 710 Copynumber: 2.4 Consensus size: 712
2642140 CCCAGTCTAA
* * * **
2642150 GCATACGGAGTTCATTCCCAGCCTAAGATAGGACCGGACTGAGGGCTATG-GCAGCACATATTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGG-T-TGCGCAGCACATGCTGG
* * * * *
2642214 GCTAGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGACACCTTCGCCGGAGCATCGCCGGAG
64 GCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAG
* * **
2642279 AACCTGACCGGCGGCATTGG-GGTTCTGATGATCGGGGGGGTCGGGGGATGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGCGTTTCGGGCGATC---GGGGT---GGG-TGTGCGCACATGATGT
*
2642343 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2642408 CACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTAAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * * *
2642473 TGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
317 TGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTGTTTT
* * * *
2642538 GTACATGCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAAATCCTTTCGAAAA
382 GTACATGCCAAAAAAAATACAAGGATCACGTCTACCACGTTTGGGGACAAAAATCCTTTCGAAAA
*
2642603 AATTTTAAAAAAATCCTGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
447 AATTTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2642668 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATAG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATAG
*** * * * *
2642733 CATTGGCATGTAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
577 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTCG
* * * * ** *
2642798 CGCATCCCGTTTCTCTGCCCGGTGTAGTGTTCGCCCACCAGCCCGCCCGCTCGTTTCGTCGGTTG
642 CGCATCCCATCTCTCTGCCCGGTATAATGCCCGCCCACCAGCCCACCCGCTCGTTTCGTCGGTTG
2642863 GCTTAG
707 GCTTAG
* *
2642869 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGGCCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGC-GCAGCACATGCTGGG
* * *
2642934 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAGA
* *
2642999 ACCTGACCGGTGGCATTGGCGTTTC-GGCGATCGGGGTGGGTGTTCGCACATGATGTGCGATGGG
130 ACCTGACCGGCGGCATTGGCGTTTCGGGCGATCGGGGTGGGTGTGCGCACATGATGTGCGATGGG
*
2643063 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
2643128 TAAAGAGCATTTGAGATTCTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACA
* * * *
2643193 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTGGCTAAATTTTTTTGTGCATG-
325 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTGTTTTGTACATGC
* * *
2643257 CAAAAAAAATACAAGGATCAGGTCTACCACGTTTGGGGACAAAACTCCTTTCGAAAAAA-TTTGA
390 CAAAAAAAATACAAGGATCACGTCTACCACGTTTGGGGACAAAAATCCTTTCGAAAAAATTTTAA
* *
2643321 AAAAATCCCGATCCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
455 AAAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
2643386 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
520 AAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATAGCATTGGCA
*
2643451 CACAGAAATATGAAGATGTACCTAAACCCACGTACCACCCTATCGATCCACGACTCGCGCATCCC
585 CACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTCGCGCATCCC
* * * * *
2643516 ATCTCTCTGGCCGTTATAATGCCCGCCCGCCTGCCCACCCGCTCGTTTCGTCGGTTGGGTTAG
650 ATCTCTCTGCCCGGTATAATGCCCGCCCACCAGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
2643579 TCATACGGACTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGC-GCAGCACATGCTGGG
* * * * *
2643644 CTCGGGCATGTGCTGGTGCCACAATTCTCTTCATCGGGGCACCATCGCCAGAGCATTGCCGAAAA
65 CTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAGA
* * ** *
2643709 ACCTGACTGGCGGCATTGGGGATCCGATGATCGGGCGGGCCGGG-GGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATT--GG---CG-T-TTCGGGCGATCGGGGTGGGTGTGCGCACATGATGTG
* * *
2643773 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2643838 ATCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
2643892 ATCTTATACA
Statistics
Matches: 915, Mismatches: 97, Indels: 24
0.88 0.09 0.02
Matches are distributed among these distances:
710 367 0.40
711 53 0.06
712 204 0.22
713 3 0.00
715 2 0.00
716 6 0.01
717 134 0.15
718 9 0.01
719 133 0.15
720 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGCCGGAGAA
CCTGACCGGCGGCATTGGCGTTTCGGGCGATCGGGGTGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACAC
TTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTGTTTTGTACATGCC
AAAAAAAATACAAGGATCACGTCTACCACGTTTGGGGACAAAAATCCTTTCGAAAAAATTTTAAA
AAAATCCCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATAGCATTGGCAC
ACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTCGCGCATCCCA
TCTCTCTGCCCGGTATAATGCCCGCCCACCAGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:2644442 original size:26 final size:26
Alignment explanation
Indices: 2644406--2644458 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2644396 GTTGACTCAG
2644406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2644432 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2644458 G
1 G
2644459 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2645744 original size:892 final size:881
Alignment explanation
Indices: 2643889--2646120 Score: 3074
Period size: 893 Copynumber: 2.5 Consensus size: 881
2643879 AGTAGCCATT
* * * *
2643889 AAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
2643954 CACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
66 CACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * *
2644019 AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCCT
130 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
2644084 AAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAAAAATATGAAGATGT
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAAAAATATGAAGATGT
*
2644149 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCACTCTGGGCCGACGTA
260 GCCTAAACCCACCTACCA-CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGG--GACGTA
* *
2644214 ----ATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
322 GTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
* * * * * * * * *
2644275 TCA-AACCAAATCGAGGGTTGCGGTAGCAGTATTGGTAGCACACAAAGGGGGACCCGATCGATCC
386 TCAGAACGAACT-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * * *
2644339 CTGGCTTGCGCGTCCCGCCCCTCTGGCCGGTTGAGCATCCGCACGATCGTTTCGTGGGTTGACTC
450 CTGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCACCCGCACGATCGTTTCGTGGGTTGACTC
* * *
2644404 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCGGACTGA
515 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * ** * * * *
2644469 ACCAAGGGTTACGGTAGCACATTCTGGGCTCAGGCATTTGTTGGTGTCGTATTTTTTTTCGTCGG
580 ACCAAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGTCCTGGTGCCGCATTTTTCTTCGTCAG
* * *
2644534 GGCACCATCGCCTGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGTCAGAGGGCA
645 GGCACCATCGCCTGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGTCAGAGGGCA
2644599 TGTGCGCACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATACTGGCCCCTTATCCCTCATC
710 TGTGCGCACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATACTGGCCCCTTATCCCTCATC
2644664 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCA
775 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCA
*
2644729 ATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTGAC
840 ATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCAC
*
2644771 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCGTGCCAACAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
2644835 CACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
66 CACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * * *
2644900 AA-TTTCAAAAATTGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTT
130 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
2644964 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-CTGCAGAAATATGAAGATG
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCAC-GCAAAAATATGAAGATG
* * * * * *
2645028 CGCCTAAATCCACATACCAGCCTATCGA-CCAACGGCTTGCGTATCCCGTCTCTCTGGGTGGCGT
259 TGCCTAAACCCACCTACCA-CCTATCGATCC-ACGACTTGCGCATCCCGTCTCTCTGGG-GACGT
* * *
2645092 AGTGCCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCGCAGTCTAAA
321 AGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAG
* * *
2645157 ATCAGATCGAACTAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
385 ATCAGAACGAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * *
2645222 CCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
450 CTGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCACCCGCACGATCGTTTCGTGGGTTGACTC
2645287 AGGCATACGGAGTTCATTCCCAGT-TCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCC
515 AGGCATACGGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CC
**
2645351 G-ACTGAGGGTTACGGCAGCACATGCTAGGCTC-GAGCATGTCCTGGTGCCGCATTTTTCTTCGT
578 GAACCAAGGGTTACGGCAGCACATGCTAGGCTCAG-GCATGTCCTGGTGCCGCATTTTTCTTCGT
* *
2645414 CAGGGCACCATCGTCTGAGCATCGCCGGAGAACCTGACCAGTGGCATTGGGGTTCCGGCGATCGG
642 CAGGGCACCATCG-C----C-T-----GAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGG
* ** * * ** *
2645479 GGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATTTTGGGG
696 GGGGTCAGAGGGCATGTGCGCACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATACT-GGC
* *
2645542 CCC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
760 CCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
* * ** *
2645606 TTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATTGTCAC
825 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCAC
* *
2645663 AAAATCTTGTACACTTCAAG-TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
1 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
2645727 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
66 CACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * *
2645792 AAGTTTGGAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTT
130 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * **
2645857 AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGCTTAAATATGAAGATGT
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAAAAATATGAAGATGT
* * * *
2645922 GCCTAAACCCACCTACCACGCTATAGATCCACGACTTGGGCATCCCGTCTCTCTGGCCGATGTAG
260 GCCTAAACCCACCTACCAC-CTATCGATCCACGACTTGCGCATCCCGTCTCTCTGG-GGACGTAG
* * *
2645987 TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCTAGTCTAAGGT
323 TGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGAT
* * * * * * * *
2646052 CGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCTGCATGCAGAGGGGGACCCGGTCGATCCCT
387 CAGAACGAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCT
2646117 GGCT
452 GGCT
2646121 CNNNNNNNNN
Statistics
Matches: 1186, Mismatches: 132, Indels: 53
0.87 0.10 0.04
Matches are distributed among these distances:
879 8 0.01
880 164 0.14
881 83 0.07
882 40 0.03
883 274 0.23
884 8 0.01
888 1 0.00
889 1 0.00
891 17 0.01
892 262 0.22
893 288 0.24
894 40 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (881 bp):
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
AGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAAAAATATGAAGATGTG
CCTAAACCCACCTACCACCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGGGACGTAGTGC
CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGA
ACGAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCT
TGCGCATCCCGCCCCTCTAGCCAGCTGAGCACCCGCACGATCGTTTCGTGGGTTGACTCAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAG
GGTTACGGCAGCACATGCTAGGCTCAGGCATGTCCTGGTGCCGCATTTTTCTTCGTCAGGGCACC
ATCGCCTGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGTCAGAGGGCATGTGCG
CACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATACTGGCCCCTTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAA
GTGTCTGAAATGGGGACACGTTTTTCAAATGGTCAC
Found at i:2647379 original size:15 final size:15
Alignment explanation
Indices: 2647356--2647401 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
2647346 TAATAATATA
2647356 TTTTT-TTTTATTAT
1 TTTTTGTTTTATTAT
2647370 TTTTTGTTTTATT-T
1 TTTTTGTTTTATTAT
2647384 ATTTTTGTATTT-TTAT
1 -TTTTTGT-TTTATTAT
2647400 TT
1 TT
2647402 ATTTAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
14 6 0.21
15 18 0.64
16 4 0.14
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (15 bp):
TTTTTGTTTTATTAT
Found at i:2647380 original size:69 final size:67
Alignment explanation
Indices: 2647289--2647430 Score: 155
Period size: 68 Copynumber: 2.1 Consensus size: 67
2647279 GTCATTTTTA
*
2647289 TTTTTATTTTATTTTATATTTTATGTATATCCTATGTATTTATTATTTATTT-ATTAT-TAATAA
1 TTTTTTTTTTATTTTATATTTTAT-T-TAT-CTATGTATTT-TTATTTATTTAATTATATAATAA
2647352 TA-TAT
62 TATTAT
* * * * * *
2647357 TTTTTTTTATTATTTTTTGTTTTATTTATTTTTGTATTTTTATTTATTTAATTATATATTATTAT
1 TTTTTTTT-TTATTTTATATTTTATTTATCTATGTATTTTTATTTATTTAATTATATAATAATAT
2647422 TAT
65 TAT
2647425 TTTTTT
1 TTTTTT
2647431 ATCCTATAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
65 10 0.16
66 13 0.21
67 9 0.14
68 17 0.27
69 14 0.22
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (67 bp):
TTTTTTTTTTATTTTATATTTTATTTATCTATGTATTTTTATTTATTTAATTATATAATAATATT
AT
Found at i:2647397 original size:18 final size:16
Alignment explanation
Indices: 2647356--2647405 Score: 66
Period size: 18 Copynumber: 3.1 Consensus size: 16
2647346 TAATAATATA
2647356 TTTTTTTTTA-TTATT
1 TTTTTTTTTATTTATT
*
2647371 TTTTGTTTTATTTATT
1 TTTTTTTTTATTTATT
2647387 TTTGTATTTTTATTTATT
1 TTT-T-TTTTTATTTATT
2647405 T
1 T
2647406 AATTATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 9 0.30
16 8 0.27
17 1 0.03
18 12 0.40
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTATTTATT
Found at i:2647416 original size:22 final size:22
Alignment explanation
Indices: 2647377--2647426 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
2647367 TATTTTTTGT
* * * *
2647377 TTTATTTATTTTTGTATTTTTA
1 TTTATTTAATTATATATTATTA
2647399 TTTATTTAATTATATATTATTA
1 TTTATTTAATTATATATTATTA
2647421 -TTATTT
1 TTTATTT
2647427 TTTTATCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTATTTAATTATATATTATTA
Found at i:2647964 original size:19 final size:20
Alignment explanation
Indices: 2647940--2647988 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
2647930 TCCGATGAAC
2647940 TTTCGAT-AAAAAACCCAGA
1 TTTCGATGAAAAAACCCAGA
**
2647959 TTTCGATGACGAAACCCAGA
1 TTTCGATGAAAAAACCCAGA
*
2647979 ATTCGATGAA
1 TTTCGATGAA
2647989 TCTTCAATCG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22
Consensus pattern (20 bp):
TTTCGATGAAAAAACCCAGA
Found at i:2647975 original size:20 final size:20
Alignment explanation
Indices: 2647950--2647987 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2647940 TTTCGATAAA
*
2647950 AAACCCAGATTTCGATGACG
1 AAACCCAGAATTCGATGACG
2647970 AAACCCAGAATTCGATGA
1 AAACCCAGAATTCGATGA
2647988 ATCTTCAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (20 bp):
AAACCCAGAATTCGATGACG
Found at i:2648331 original size:12 final size:12
Alignment explanation
Indices: 2648314--2648351 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
2648304 CCAGGTTTTT
2648314 TTTATTTATTTG
1 TTTATTTATTTG
2648326 TTTATTTA-TT-
1 TTTATTTATTTG
2648336 TTTATTTTATTTG
1 TTTA-TTTATTTG
2648349 TTT
1 TTT
2648352 TTATATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.17
11 6 0.26
12 10 0.43
13 3 0.13
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (12 bp):
TTTATTTATTTG
Found at i:2648344 original size:23 final size:22
Alignment explanation
Indices: 2648312--2648359 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 22
2648302 CTCCAGGTTT
2648312 TTTTTATTTATTTGTTTATT-TA
1 TTTTTATTTATTTGTTT-TTATA
2648334 TTTTTATTTTATTTGTTTTTATA
1 TTTTTA-TTTATTTGTTTTTATA
2648357 TTT
1 TTT
2648360 ATTAGATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (22 bp):
TTTTTATTTATTTGTTTTTATA
Found at i:2648345 original size:27 final size:26
Alignment explanation
Indices: 2648309--2648362 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
2648299 CTGCTCCAGG
2648309 TTTTTTTTATTTATTTGTT-TATTTAT
1 TTTTTTTTATTTATTT-TTATATTTAT
*
2648335 TTTTATTTTATTTGTTTTTATATTTAT
1 TTTT-TTTTATTTATTTTTATATTTAT
2648362 T
1 T
2648363 AGATTAGGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.80
Consensus pattern (26 bp):
TTTTTTTTATTTATTTTTATATTTAT
Found at i:2648407 original size:6 final size:6
Alignment explanation
Indices: 2648398--2648470 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
2648388 TATCTTTACC
* *
2648398 TTATTT TTATTT TTGTTT TACTTTTCT TTATTT TTATTT TTA--T TTATTT
1 TTATTT TTATTT TTATTT T--TATT-T TTATTT TTATTT TTATTT TTATTT
* * *
2648447 TCACTT TTATTT TTTTTT ATTATT
1 TTATTT TTATTT TTATTT -TTATT
2648471 CTATTTTCTT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
4 4 0.08
6 36 0.69
7 7 0.13
8 3 0.06
9 2 0.04
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:2648421 original size:27 final size:28
Alignment explanation
Indices: 2648385--2648438 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
2648375 ATTTAATATT
2648385 TTTTATCTTTACCTTATTTTTATTTTTG
1 TTTTATCTTTACCTTATTTTTATTTTTG
* *
2648413 TTTTA-CTTTTCTTTATTTTTATTTTT
1 TTTTATCTTTACCTTATTTTTATTTTT
2648439 ATTTATTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (28 bp):
TTTTATCTTTACCTTATTTTTATTTTTG
Found at i:2648438 original size:16 final size:16
Alignment explanation
Indices: 2648309--2648467 Score: 80
Period size: 16 Copynumber: 10.1 Consensus size: 16
2648299 CTGCTCCAGG
2648309 TTTTT-TTTATTTATT-
1 TTTTTATTTATTT-TTA
*
2648324 TGTTTATTTATTTTTA
1 TTTTTATTTATTTTTA
*
2648340 -TTTTATTTGTTTTTA
1 TTTTTATTTATTTTTA
* **
2648355 TATTTA-TTA-GATTA
1 TTTTTATTTATTTTTA
* *
2648369 GGTTTTATTTAATATTT-
1 -TTTTTATTT-ATTTTTA
* * **
2648386 TTTATCTTTA-CCTTA
1 TTTTTATTTATTTTTA
*
2648401 TTTTTATTTTTGTTTTA
1 TTTTTATTTAT-TTTTA
* *
2648418 CTTTTCTTTATTTTTA
1 TTTTTATTTATTTTTA
*
2648434 TTTTTATTTATTTTCA
1 TTTTTATTTATTTTTA
* *
2648450 CTTTTATTTTTTTTTA
1 TTTTTATTTATTTTTA
2648466 TT
1 TT
2648468 ATTCTATTTT
Statistics
Matches: 103, Mismatches: 31, Indels: 19
0.67 0.20 0.12
Matches are distributed among these distances:
14 5 0.05
15 33 0.32
16 51 0.50
17 12 0.12
18 2 0.02
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (16 bp):
TTTTTATTTATTTTTA
Found at i:2648672 original size:31 final size:31
Alignment explanation
Indices: 2648637--2648728 Score: 77
Period size: 31 Copynumber: 3.1 Consensus size: 31
2648627 AAAAGGGATT
2648637 TTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 TTTGAGGAAAAGTTGAAAGTATCAATTTTCC
* * * ** *
2648668 TTTGA-AATAAATTTTCAAA--AAAAATATT--
1 TTTGAGGA-AAA-GTTGAAAGTATCAATTTTCC
2648696 TTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 TTTGAGGAAAAGTTGAAAGTATCAATTTTCC
2648727 TT
1 TT
2648729 AAAAATAAAT
Statistics
Matches: 42, Mismatches: 12, Indels: 14
0.62 0.18 0.21
Matches are distributed among these distances:
27 5 0.12
28 8 0.19
29 7 0.17
30 7 0.17
31 10 0.24
32 5 0.12
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTGAGGAAAAGTTGAAAGTATCAATTTTCC
Found at i:2648750 original size:57 final size:58
Alignment explanation
Indices: 2648503--2648957 Score: 634
Period size: 57 Copynumber: 7.7 Consensus size: 58
2648493 AAAAGTTCAA
* * *
2648503 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAATTTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
* *
2648563 -GAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* **
2648620 AAAAAAAAAAAGGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTTGAAATAAATTTTC
1 ----AAAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
2648684 AAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
2648743 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
*
2648802 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
2648859 CAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
2648916 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
2648958 CTACACAAGA
Statistics
Matches: 360, Mismatches: 23, Indels: 27
0.88 0.06 0.07
Matches are distributed among these distances:
57 151 0.42
58 4 0.01
59 99 0.28
60 47 0.13
61 8 0.02
62 5 0.01
63 1 0.00
64 45 0.12
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:2648841 original size:117 final size:116
Alignment explanation
Indices: 2648504--2648957 Score: 650
Period size: 117 Copynumber: 3.9 Consensus size: 116
2648494 AAAGTTCAAA
* * * *
2648504 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAATTTTC-GAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCCAAAAAA
*
2648568 ATATTTTTAGGGAAAAGTTGAAAGTATCCATTTTCCTTAAAAATAAATTTTC
65 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
2648620 AAAAAAAAAAAGGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTTG-AAATAAATTTT
1 -----AAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC-TTGAAAATAAAATTT
*
2648683 CAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
57 CCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
2648743 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCCAAAAAA
* *
2648808 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
65 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
2648860 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTT-CAAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCCAAAAAAA
2648923 TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
66 TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
2648958 CTACACAAGA
Statistics
Matches: 309, Mismatches: 14, Indels: 27
0.88 0.04 0.08
Matches are distributed among these distances:
114 42 0.14
115 9 0.03
116 36 0.12
117 110 0.36
118 7 0.02
121 6 0.02
122 8 0.03
123 88 0.28
124 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (116 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCCAAAAAAA
TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:2651663 original size:26 final size:24
Alignment explanation
Indices: 2651627--2651678 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
2651617 CTCGATCTGG
2651627 TCTGATGTTAGACTAGG-AATGAAC
1 TCTGATGTTAGA-TAGGAAATGAAC
*
2651651 TCTGTATGCTTAGATTGGAAATGAAC
1 TCTG-ATG-TTAGATAGGAAATGAAC
2651677 TC
1 TC
2651679 CGTTTGCCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 6 0.25
26 14 0.58
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (24 bp):
TCTGATGTTAGATAGGAAATGAAC
Found at i:2652045 original size:889 final size:902
Alignment explanation
Indices: 2649989--2652280 Score: 3010
Period size: 889 Copynumber: 2.5 Consensus size: 902
2649979 GCCCAGCATG
* * *
2649989 TGCTA-CCGTAACCCTCGGTCTGGTCCAATCTTAGAGTGGAAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
2650053 ACTGATGAAACGAGTGGGCGGGCGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-T
66 ACTGATGAAACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
* *
2650117 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTATGTGCCAATGCCATT
131 -GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* ** * * *
2650182 TTTCTCACTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAACTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* * * * **
2650247 CTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAAAATTTTGG
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGTTTTGGGATTTTTTAAAATTTTTTGG
* * *
2650311 ATGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAA
325 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* * *
2650376 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTTCAAA
390 TTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGA
* *
2650441 CACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTT
455 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * *
2650506 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAGGTACCAGCACCCATCGCACATCAT
520 TCAACATTTGATGAGGGATAGGGGCCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCAT
* *
2650571 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAATCCCAATGTCGCCAGTCAGGTTCTCCGGTG
585 GTGCGCACACCCCCCGG--CCCCC-ATCGCC-G-AT--CAATGACGCCAGTCAGGTTCTCCGATG
** ** *
2650636 GATGCTCCGGTGATTGTGCCCCGACGAAGAAAATCTGACACCAGCACATGCCCGAGCCTAGCATG
643 GATGCTCCGACGATCATGCCCCGACGAAGAAAATCTGACACCAGCACATGCCCGAGCCCAGCATG
* * *
2650701 TGCATACCGCCACACCCCTCGAGTCTGGTTTTGATCTTAGCTTGGGAATGAACTCCGTATGCTTA
708 TGCAT--CGCCACAACCCTCGAGTCTGGTTCTGATCTTAGCTTAGGAATGAACTCCGTATGCTTA
* * * ** * *
2650766 GACTGGGAATGGAACTCTGTATGCCCAAAGTCAACCCACGAAATGAGTGTGCGGGACGCTTCAGC
771 GACTGGAAATGGAACTCCGTATGCCCAAAGTCAACCAACGAAACAAGCGTGCAGGACGCTTCAGC
* * * *
2650831 CGGCCAGACGGACGCGGATGCGCAAGCCGGGGATCAGCCAGGTTCCCCCTCTGTGTGCTGCTGAT
836 CGGACAGACGGACGCGGATGCGCAAGCCGGGGATCAGCCAGGGTCCCCCTCGGTGTGCTGCCGAT
*
2650896 CT
901 CC
* ** * ** *
2650898 TGCTACCCGCAACCCTTTGATCCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATCGCCCTAA
1 TGCTACCCGTAACCCTCAG-T-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT-G-CCTAA
* * *
2650963 GCCAACCGACGAAACAGAGCGGGC-GGA--ACGGGCAC-ACGGCCGAGCCAAAGAGAGACGGGAA
62 GCCAACTGATGAAAC-GAGCGGGCGGGAGGGCGGGCACTAC-GCCG-GCC--AGAGAGACGGG-A
* * *
2651024 TGCGCAAGCCGT-GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCC
121 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * * *
2651088 AATGCCATTTTTATGGCCTATAAATTCATACAATTGTCCCTTAAGCCTTCACATGAAGTTTCATG
186 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
2651153 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCCTTTTGGGATTTTTTTAA
251 GCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGTTTTGGGATTTTTTAAA
* *
2651218 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG
316 ATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * * *
2651283 CATAAAAAAATACCGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
380 CACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCC
* * *
2651348 CCATTTTAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGG
445 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
2651413 TTGTGAGTTCTCGACATTTGATGAGGGATAGGGGCCCAATATAGGGGCCAAGTACCAGCACCCAT
510 GTGTGAGTTCTCAACATTTGATGAGGGATAGGGGCCCAATATAAGAGCCAAGTACCAGCACCCAT
* * * *
2651478 TGCACATCATGTGCGCACACCCCCTCGG-CCCC-TC-CC-AT-ACT-AC-CGA-TCAGGTTCTTC
575 CGCACATCATGTGCGCACACCCCC-CGGCCCCCATCGCCGATCAATGACGCCAGTCAGGTTCTCC
* *
2651535 GAT-GATGCTCCGACGATCATGCCCCGACGAAGAAAAATAC-GGCACCAGCACATGCTCGAGCCC
639 GATGGATGCTCCGACGATCATGCCCCGACGAAG-AAAAT-CTGACACCAGCACATGCCCGAGCCC
** * *
2651598 AGCATGTGC-T-TTCACAACCCTCGA-TCTGG-TCTGATGTTAGAC-TAGGAATGAACTCTGTAT
702 AGCATGTGCATCGCCACAACCCTCGAGTCTGGTTCTGATCTTAG-CTTAGGAATGAACTCCGTAT
* * * *
2651658 GCTTAGATTGGAAAT-GAACTCCGTTTG-CCTAAGTCAACCAATGAAACAAGCGTGCAGG-CGC-
766 GCTTAGACTGGAAATGGAACTCCGTATGCCCAAAGTCAACCAACGAAACAAGCGTGCAGGACGCT
* * *
2651719 TGAGCCGGACAGAGGGGCG-GGATGCGCAAGCCGGGGATC-GACC-GGGTCCCCCTCGGTGTGCT
831 TCAGCCGGACAGACGGACGCGGATGCGCAAGCCGGGGATCAG-CCAGGGTCCCCCTCGGTGTGCT
2651781 GCCGATCC
895 GCCGATCC
**
2651789 TGCT-GTCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
2651853 ACTGATGAAACGAGCGGGCGGGTGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
66 ACTGATGAAACGAGCGGGC----GGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
2651918 AGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTGATATTTCTACGTGCCAAAACC
127 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
2651983 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
2652048 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTT-GGATTTTTTAAAATTTT
257 TGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GTTTTGGGATTTTTTAAAA-TTT
** *
2652112 TTTGGAAATAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
320 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
2652177 AAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATT
385 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATT
* *
2652242 TCAGACACTTTAATGGCTACTGGCAGCAGACCTGAAAAA
450 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
2652281 AGCGTCCCCA
Statistics
Matches: 1210, Mismatches: 143, Indels: 80
0.84 0.10 0.06
Matches are distributed among these distances:
885 8 0.01
886 18 0.01
887 1 0.00
888 43 0.04
889 329 0.27
890 22 0.02
891 31 0.03
892 32 0.03
893 17 0.01
894 3 0.00
895 24 0.02
896 10 0.01
897 38 0.03
898 6 0.00
899 11 0.01
902 26 0.02
903 46 0.04
904 3 0.00
905 1 0.00
906 2 0.00
909 7 0.01
910 10 0.01
911 3 0.00
912 40 0.03
913 6 0.00
914 20 0.02
915 176 0.15
916 23 0.02
917 251 0.21
918 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (902 bp):
TGCTACCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACTGATGAAACGAGCGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGTTTTGGGATTTTTTAAAATTTTTTGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CAACATTTGATGAGGGATAGGGGCCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCATCGCCGATCAATGACGCCAGTCAGGTTCTCCGATGGATGCTCC
GACGATCATGCCCCGACGAAGAAAATCTGACACCAGCACATGCCCGAGCCCAGCATGTGCATCGC
CACAACCCTCGAGTCTGGTTCTGATCTTAGCTTAGGAATGAACTCCGTATGCTTAGACTGGAAAT
GGAACTCCGTATGCCCAAAGTCAACCAACGAAACAAGCGTGCAGGACGCTTCAGCCGGACAGACG
GACGCGGATGCGCAAGCCGGGGATCAGCCAGGGTCCCCCTCGGTGTGCTGCCGATCC
Found at i:2654276 original size:26 final size:26
Alignment explanation
Indices: 2654247--2654298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2654237 CGATCCTATA
2654247 TTAGACT-AGGAATGAACTCCGTATGC
1 TTAGACTGA-GAATGAACTCCGTATGC
2654273 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
2654299 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:2654897 original size:26 final size:26
Alignment explanation
Indices: 2654859--2654911 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2654849 CCAGTTTGAT
* * *
2654859 CTTAGACTGGGAACGAGCTCCGTATG
1 CTTAGACTAGGAACGAACTACGTATG
*
2654885 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAACGAACTACGTATG
2654911 C
1 C
2654912 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTACGTATG
Found at i:2656461 original size:26 final size:26
Alignment explanation
Indices: 2656411--2656463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2656401 CTGGTCTGAT
**
2656411 CTTAGACTCGGAATGAACTTTGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
*
2656437 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
2656463 C
1 C
2656464 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:2659080 original size:26 final size:26
Alignment explanation
Indices: 2659051--2659103 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2659041 CTGGTCCGAT
2659051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2659077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2659103 C
1 C
2659104 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2660008 original size:26 final size:26
Alignment explanation
Indices: 2659957--2660009 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2659947 CCGGTCCGAT
* * *
2659957 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2659983 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2660009 C
1 C
2660010 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2660911 original size:26 final size:26
Alignment explanation
Indices: 2660860--2660912 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2660850 CTGATCCGAT
*
2660860 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2660886 CTTAGACTGGGAA-GAAACTCCGTATG
1 CTTAGACTGGGAATG-AACTCCATATG
2660912 C
1 C
2660913 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2661797 original size:26 final size:26
Alignment explanation
Indices: 2661757--2661809 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2661747 CTGGTTCGAT
*
2661757 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
2661783 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
2661809 C
1 C
2661810 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:2662370 original size:895 final size:895
Alignment explanation
Indices: 2658173--2665778 Score: 9444
Period size: 895 Copynumber: 8.5 Consensus size: 895
2658163 CTGGTCTGAT
* * * *
2658173 CTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * **
2658238 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGATCCCCCTCTGTGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
2658303 TACTGCCGCAA-CCTTCAGTCTAGTCTGATCTTAGACTGGGAATGACCTCCGTATGACTAAGCCA
130 TACTGCCACAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
2658367 ACTGATGAAATGAGCAGGTGGACGGGCAGGTGGGCACTACGCCGACCGGAGAGACGGGATGCGCA
194 AC---CGAAACGA-C--G-AG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
2658432 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTAG-GTGCCAATGA
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCGTGCCAATGC
*
2658496 TATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
315 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
2658561 ACGACTCGTTTTCTATTTTTCACGATCTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
380 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
* * * * * *
2658626 TTCGGAAAGAGTTTTGGCCCCAAACTTGGAAGACTTGATCCTTGTATTTTTTTTGGCATGCATAA
445 TTCTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
2658691 AAAAATTCAGCTAAAAACTTGAAGTGTACAACATTTTGTGACCAATTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
2658756 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
2658821 AGTTCTTGAGGATTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
2658886 ATCATGTGCGCACACCCCCCTC-GACCCCCCGATCGTCGTAACCCCAATG-TCGCCTGTCAGGTT
705 ATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCT-GCCGGTCAGGTT
* * * *
2658949 CTCCGACGATGCTCCGGTGATGGTGCCTCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGC
768 CTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
2659014 CTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
833 CTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
2659077 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAAATGAGCGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
2659142 TCGACCGGAGGGGCGGGATACGCAAGCCGGGGATCGGTCAGGTCCCCCT-TGCATGCTACCGATT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * *
2659206 TTGCTGACACAACCCTCGATCTGATCCGATCTTAGATTGGGATTGAACTCCGTATGCCTAAGCCA
129 CTACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2659271 ACCGACGAAACGAGCGAGCAGGCGGGCGGGTGGGCACTACGTCGGCCAAAGAAACGGAATGTGCA
194 A-C--CGAAACGA-C--G-A-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
2659336 AGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
2659401 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCGTCACGTGAAGTTTGAATGGCAAG
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-CATGGCAAG
* * *
2659466 AACGACTCGTTTTATA-TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAATTTT
380 -ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
* * * *
2659530 TTTCTGAAGGATTTTTGGCCCCAAACATGGTAAGACGTGATCCTTGTATTTTTATTGTCATGCAC
444 TTTCTGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
2659595 AAAACAATTCAGCCAAAAACTCGAAGTGTAACAAGATTTTGTGACCATTTGAAAAAA-TGTCTCC
508 AAAAAAATTCAGCTAAAAACTCGAAGTGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CC
* * *
2659659 ACATTTCAGACACTTTAATGGCTACTGGCAAC-AACCTATAAAATCTCAAATGCTC-TTAAGGGA
571 -CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
2659722 GTGTCAGTTCTCGTGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
635 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
2659787 CGCACATCATGTGCGCACACCACCCCAGCCCCTCCGATCGCCGGAACCCCAATGCTACCGGTCAG
700 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAG
* * * *
2659852 GTTC-TCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCT
765 GTTCTTCGA-CGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* * ** * * * *
2659916 GAGGCGAGCATGTGCTGCCATAACCCTTGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTA
829 GAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
2659981 TG
894 TG
* * * *
2659983 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCA-T
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * **
2660047 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTACGTGCTGCCAATTT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * ** * *
2660112 TACTACTGCAACCC-TCAGTCCGGTTTGATGTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 TACTGCCACAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
2660176 ACCGACAAAACGAGTGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
194 ACCG---AAAC----GA-CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
2660241 AGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
2660306 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-CGTGAAGTTTCATGGCAAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * * *
2660370 CTACTCGTTTTTTATTTTTCACGATTTTCAAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTT
381 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
** * * *
2660435 T-TAGAAATCA-TTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACA
446 TCT-G-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
2660498 AAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
509 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
2660563 TTCAGACACTTTAATAGCTTCTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGAGTGT
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
2660628 GAGTCCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACA
639 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** * * *
2660693 CATCATGTGCGCACACCCCCCTCAACCCCCCCGATCGCCGTAACCCCAATGCCGTCGGTCAGGTT
704 CATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTT
* ** * * * * * *
2660758 CTCCGACGATGCTCCGACGATGGTGCCCCGGCCAAGAACAATATGACACCAGCACATGCCTGAGC
768 CTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * **
2660823 CTAGCATGTACCGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATG
833 CTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
2660886 CTTAGACTGGGAA-GAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAG
1 CTTAGACTGGGAATG-AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * ** *
2660950 TCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGACCGAGTCCCCCTCTACATGCTATCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
2661015 CTACTGCCACAACCC-TCAGTTTGATCTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAGGCC
129 CTACTGCCACAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
2661079 AACCG--ACGAAACGAGTGGGCGAGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
193 AACCGAAACG--ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
2661142 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
2661207 TATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
2661272 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTC-GA
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCTG-
* * * *
2661336 AAGGAGTTTTTGCTCCAAACTTGGTAGACGTGATCCTAGTATTTTTGTTGGCCTGCACAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
2661401 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
2661466 CAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
2661531 TCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * *
2661596 GTGCGCACAGCCCCCCCGGCCTGCTCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTTCGA
710 GTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTTCGA
* * * * *
2661661 CGATCCTCTGGTGATGGTGCCCCGACGAAGAAAACTACGGCACCAGCACATGCCCTAGCCCAGCA
774 CGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCA
* * *
2661726 TGTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATG
839 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
2661783 CTTAGACTGGAAATGAACTCCATATGCCTAAGTCAACCCATTAAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAATGAGCGTGCGGGCGCTCAG
* * * * *
2661848 CCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCAGTCAGGTCCCCCT-TACGTGCTGTCGAT-
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * * *
2661911 TTGTTGCCACGACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
129 CTACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** *
2661976 ACCGATAA-GACGAGC-GGCGGGCGGGCACTACGTCAACCAGAGAGACGGAATGCGCAAGCCGTG
194 ACCGA-AACGACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
2662039 GATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTCCGTACCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
*
2662104 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-
* *
2662169 ATTTT-TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTGAAAATTTTTTCTGAA
387 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCTGAA
* *
2662233 GGTGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
2662298 CAGCCAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAATGTGTCCCCGTTTTAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2662363 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGCGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
2662428 AAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * *
2662493 GCGCACACCCTCCCTC-GACCCCCCAATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGAT
712 GCGCACACCC-CCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTTCGAC
* *** * ** *
2662557 GATGCTCCGGCGATGGTGCCCCGGTAAAGAAAAATGCGGCACTGGCACATGCTCGAGCCTAGCAT
775 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCAT
* * * * * *
2662622 GTGCTACCACAACCCTCAGTCTGGTTCGATCTAAGATTGGGAATGAACTCCGTATG
840 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* **
2662678 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
2662743 CGGCCAGAGGGGCGGGATACGTAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
2662808 TGCTGCCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
2662873 TCGACAAAACGAGTGGGTGGGAGGGCGGGCGGGCACTACGTCGGCCAAAGAGGCGGGATGCGCAA
195 -C--CGAAACGA-----CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
2662938 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGTGTGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * * * *
2663003 -TTTTATGGCTTGCAAATTCATACAATGGTCCCTTGAGCGTTGACGTGAAGTTTCATGGCAGGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
2663067 GACACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTC-GAGATTTTGTAAAATTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * * *
2663131 T-TCGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTTGCATGCACAA
446 TCT-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
2663195 AAAATTTCAGCTAAAAACTTGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCCAT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCAT
* * *
2663260 TTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTATA-GGGGTG
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTG
* *
2663324 TGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGC
638 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
2663389 ACATCATGTGCGAACACCCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
703 ACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGT
** * *
2663454 TC-TC--CGA-----C---GA----------A-GAA-AAATGTTA---CACCAGCACATTCTCGA
767 TCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAA-AATACGGCACCAGCACATGCCCGA
* * *
2663493 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAGTGAACTCTGTATG
831 GCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
2663558 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * ** * * * * *
2663623 CGGCCTGCGGTGCGGGATGCACAAGTTGGGGATCGGCTGGGTCCCCCTCTGTGAGCTACCGAACC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * * * *
2663688 TACTACCATGACCC-TCAGTCTGGTCTGATCATAGACTGGGAATGAACTCTGCATGACTAAGCCA
130 TACTGCCACAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-
*
2663752 AACGACGAAACGAGCGAGCGGGCGAGCGGACGGGCACTACG-CGGGCCAGAGAGGCGGGATGCGC
193 AAC--CGAAACGA-CGAGCGGGC--G-GG-CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGC
*
2663816 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCGTGCCAATGC
250 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
2663881 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAG
315 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * **
2663946 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTTGGGATTTTTTAAAATGTT
380 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT-TT
* * * *
2664011 TTT-GGAAGGAGTTTTGGCACAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
444 TTTCTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
2664075 AAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
509 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
2664140 TTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGT
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
2664205 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
639 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** * *
2664270 CTTCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGTAGGAACCTCAATGCTGCCGTTCAGGTTC
704 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTC
* * * * * *
2664334 TTCGGCGATGC-CCTGGCGATGGTGCCCCGAAGAAAAAAAATGCGGCACCAGCACATGCGCGAGC
769 TTCGACGATGCTCC-GGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * *
2664398 CCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGAATG
833 CTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
2664461 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
2664525 CCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
2664590 CTACTACCGCAACCCTCGGTGTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
2664655 ATCGACGAAACGAGCG-GACGGGCGGACAGCTGGGCGGAAACTGCGTCGGCCAGAGAGACGGGAT
194 A-C--CGAAACGA-CGAG-CGGGCGG---GC-GGGC----ACTACGTCGGCCAGAGAGACGGGAT
** * * * *
2664719 AAGCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
246 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
*
2664784 ATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
311 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
**
2664849 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAA
376 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAA
* * * *
2664913 TTTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATG
440 ATTTTTTCTGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
2664978 CATAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCC
505 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
2665043 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG
570 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
2665107 GTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCAT
635 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
2665172 CGCACATCATGTGCGAACACCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAG
700 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAG
** * ** ** * *
2665237 GTTCAACGGCGATGCTCTAGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCG
765 GTTCTTCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * * *
2665302 AGCCTAGCATGTGCTACCGCAACCGTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
830 AGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
2665367 G
895 G
* * * * * * * *
2665368 CTTAGACTGGGTATGATCTCCGTATGCCTAAGTCAACCTACAAAACGATCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
2665433 CGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATTGACTGGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCC
* *** * * * * *
2665498 TGCTGTGGCAACCCTCGATCTGGTCCAATTTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
130 TACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
2665563 CTGACGAAA--A-TAGCAGGTGGGCAGGCACTACGCCGGTCAGAGAGATGGGATGCGCAAGCCGT
195 C---CGAAACGACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
2665625 GGATCGATAGGGTGGCAGGCGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* ** ** *
2665690 ATGGCTTGTAAATTCATACAATGGTCCCTTAGGAGTTCAAATGAAGTTTCATGGCAGGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
2665755 ATTTTTTATTTTTCACGATTTTTG
387 GTTTTCTATTTTTCACGATTTTTG
2665779 TTGGTAGATG
Statistics
Matches: 5832, Mismatches: 738, Indels: 273
0.85 0.11 0.04
Matches are distributed among these distances:
876 7 0.00
878 44 0.01
879 9 0.00
880 468 0.08
881 220 0.04
882 9 0.00
883 3 0.00
885 1 0.00
889 2 0.00
894 67 0.01
895 821 0.14
896 272 0.05
897 514 0.09
898 70 0.01
899 12 0.00
900 35 0.01
901 54 0.01
902 174 0.03
903 536 0.09
904 652 0.11
905 646 0.11
906 438 0.08
907 743 0.13
908 31 0.01
909 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
ACTGCCACAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGAAACGACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCTGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTTCGACGATGCT
CCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTG
CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:2663561 original size:26 final size:26
Alignment explanation
Indices: 2663532--2663584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2663522 CTGGTCCGAT
* *
2663532 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2663558 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2663584 C
1 C
2663585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2664487 original size:26 final size:26
Alignment explanation
Indices: 2664435--2664487 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2664425 CCGGTCCGAT
*
2664435 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
2664461 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
2664487 C
1 C
2664488 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:2665227 original size:907 final size:899
Alignment explanation
Indices: 2663476--2665776 Score: 3201
Period size: 907 Copynumber: 2.6 Consensus size: 899
2663466 AAAAATGTTA
* *
2663476 CACCAGCACATTCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
1 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
2663541 GGAGTGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGA
66 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACAAAACGA
* * * * * * *
2663606 GCGTGCAGGCGCTCAGCCGGCCTGCGGTGCGGGATGCACAAGTTGGGGATCGGCTGGGTCCCCCT
130 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACTGGGTCCCCCT
* * * *** * ** *
2663671 CTGTGAGCTACCGAACCTACTACCATGACCCTCAGTCTGGTCTGATCATAGACTGGGAATGAACT
195 CTGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACT
* * * *
2663736 CTGCATGACTAAGCCAAACGACGAAACGAGCGAGCGGGC-G-AGCGGACGGGCACTACGCGGGCC
260 CCGTATGCCTAAGCC-AACGACGAAACGAGCGA-CGGGCGGCAGCGGGC-GG-ACTACGC-GGCC
* *
2663799 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
320 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATA
* *
2663864 TTGCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACA
385 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACA
* * ** * *
2663929 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTTG
450 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
* * *
2663994 GGATTTTTTAAAATGTTTTTGGAAGGAGTTTTGGCACAAAACTTGGTAGACATGATCCTTGTATT
515 AGATTTTTTAAAATGTTTTTAGAAGAAGTTTTGGCACAAAACTTGGTAGACATGATCCTTGTATT
* *
2664059 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTG
580 TTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTG
* * *
2664124 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCAAACCTGTAAAATCTCAAATG
645 AAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
** *
2664189 CTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
710 CTCTTCAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGT
* * * *
2664254 ACCAGCACCCATCGCACTTCATGTGCGCACACCCCCTGGCCCCCCCGATCGTAGGAACCTCAATG
775 ACCAGCACCCATCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGTAGGAACCCCAATG
* ** *
2664319 CTGCCGTTCAGGTTCTTCGGCGATGCCCTGGCGATGGTGCCCCGAAGAAAAAAAATGCGG
840 CTGCCGGTCAGGTTCAACGGCGATGCCCTAGCGATGGTGCCCCGAAGAAAAAAAATGCGG
* *
2664379 CACCAGCACATGCGCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
1 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* *
2664444 GGAATGAACTCTGAATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACG
66 GGAATGAACTCTGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC-CACAAAACG
* * *
2664508 AGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGACCGGGTCCCCC
129 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACTGGGTCCCCC
* *
2664573 TCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTGTGGTCCAATCTTAGACTGGGAATGAAC
194 TCTGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
*
2664638 TCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGCGGACAGCTGGGCGGAAACTGCGTCG
259 TCCGTATGCCTAAGCCAA-CGACGAAACGAGC-GACGGGCGG-CAGC-GGGCGG--ACTACG-CG
** *
2664703 GCCAGAGAGACGGGATAAGCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTC
317 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTC
* * *
2664768 ATATTTCTACATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
382 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
2664833 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
447 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
* * *
2664898 TCGAGATTTTTT-AAATTTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCCTT
512 TCGAGATTTTTTAAAATGTTTTT-AGAAGAAGTTTTGGCACAAAACTTGGTAGACA-TGATCCTT
* *
2664961 GTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACC
575 GTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAAGTGTACAAGATTTTGTGACC
2665026 ATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
640 ATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
2665091 AAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGTGC
705 AAATGCTCTTCAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGC
*
2665155 CAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCACGGCCCCCCCGATCGTCGGAACC
770 CAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCC-CGGCCCCCCCGATCGTAGGAACC
* * * ** *
2665220 CCAATGCTGTCGGTCAGGTTCAACGGCGATGCTCTAGTGATGGTGCCCCGGTGAAGAAAAATGCG
834 CCAATGCTGCCGGTCAGGTTCAACGGCGATGCCCTAGCGATGGTGCCCCGAAGAAAAAAAATGCG
2665285 G
899 G
* * * *
2665286 CACCAGCACATGCTCGAGCCTAGCATGTGCTACCGCAACCGTTGGTCCGGTCCGATCTTAGACTG
1 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
2665351 GGAATGAACTCCGTATGCTTAGACTGGGTATGATCTCCGTATGCCTAAGTCAACCTACAAAACGA
66 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-ACAAAACGA
* * * * * *
2665416 TCATGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATTGACTGGGTCCCCCT
130 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACTGGGTCCCCCT
* * *** * * *
2665481 CTGTGTGCTGCCAATCCTGCTGTGGCAACCCTCGATCTGGTCCAATTTTAGATTGGGAATGAACT
195 CTGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACT
* ** *
2665546 CCGTATGCCTAAGTCAACTGACGAAAATAGC-A-GGTG-GGCA---GGC--ACTACGCCGGTCAG
260 CCGTATGCCTAAGCCAAC-GACGAAACGAGCGACGG-GCGGCAGCGGGCGGACTACG-CGGCCAG
* *
2665603 AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGC-AGGCGGGTTTAGGCACATCTTCATAT
322 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GCTAGGTGGGTTTAGGCACATCTTCATAT
* * ** *
2665667 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGAGTTCAAAT
386 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAT
* * *
2665732 GAAGTTTCATGGCAGGACGACTCATTTTTTATTTTTCACGATTTT
451 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
2665777 TGTTGGTAGA
Statistics
Matches: 1240, Mismatches: 140, Indels: 44
0.87 0.10 0.03
Matches are distributed among these distances:
895 165 0.13
896 2 0.00
899 3 0.00
902 3 0.00
903 257 0.21
904 8 0.01
905 2 0.00
906 104 0.08
907 695 0.56
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (899 bp):
CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCACAAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACTGGGTCCCCCTC
TGTGTGCTGCCGATCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACGACGAAACGAGCGACGGGCGGCAGCGGGCGGACTACGCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTT
TTTAAAATGTTTTTAGAAGAAGTTTTGGCACAAAACTTGGTAGACATGATCCTTGTATTTTTGTT
GGCATGCACAAAAAAATTCAACTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTC
AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGTAGGAACCCCAATGCTGCCG
GTCAGGTTCAACGGCGATGCCCTAGCGATGGTGCCCCGAAGAAAAAAAATGCGG
Found at i:2665371 original size:26 final size:26
Alignment explanation
Indices: 2665342--2665394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2665332 CCGGTCCGAT
2665342 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2665368 CTTAGACTGGGTATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2665394 C
1 C
2665395 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2666922 original size:90 final size:90
Alignment explanation
Indices: 2666769--2666951 Score: 366
Period size: 90 Copynumber: 2.0 Consensus size: 90
2666759 AAATCTCAAA
2666769 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
1 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
2666834 GTACCAGGACCCATTGCACATCATG
66 GTACCAGGACCCATTGCACATCATG
2666859 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
1 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
2666924 GTACCAGGACCCATTGCACATCATG
66 GTACCAGGACCCATTGCACATCATG
2666949 TGC
1 TGC
2666952 GCACACCCCC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (90 bp):
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAA
GTACCAGGACCCATTGCACATCATG
Found at i:2667156 original size:26 final size:26
Alignment explanation
Indices: 2667107--2667157 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
2667097 GATTCGATCC
* *
2667107 TAGACTGGGAAAGAACTTTGTATGCT
1 TAGACTGGGAAAGAACTCTATATGCT
* *
2667133 TAGATTGGGAATGAACTCTATATGC
1 TAGACTGGGAAAGAACTCTATATGC
2667158 CTAAGTCAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTCTATATGCT
Found at i:2668042 original size:26 final size:26
Alignment explanation
Indices: 2668011--2668061 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2668001 CTAGTATGAT
*
2668011 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACAGGGAATGAACTTCGTATA
2668037 CTTAGACAGGGAATGAACTTCGTAT
1 CTTAGACAGGGAATGAACTTCGTAT
2668062 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTTCGTATA
Found at i:2670082 original size:906 final size:901
Alignment explanation
Indices: 2668674--2671485 Score: 3812
Period size: 906 Copynumber: 3.1 Consensus size: 901
2668664 CCAGTCCGAT
* *
2668674 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * ** * ** * * *
2668739 CGGCCAGAAGGGTAGGATGCATAAGCCGGGGAGCGATCGGGTCTACCTTTACATGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACGTGCTGCCGATCT
* * * *
2668804 TGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTACGTATGCCTAAGTCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
** * * * ** *
2668869 TTGACGAAATGAGCGGGA-GGGTGGGCGGGCGGGCGCTA-TGC-CGGCCAAAGAGACGGGATGCG
196 CAGACGAAACGAGC-GGACGGG-CGGC-GACGGGCGAAACTGCGCGGCCAGAGAGACGGGATGCG
* * * * *
2668931 TAAGCCGTGGATCAATAGGGTGGTAGGTGGGCTTAGGCACATCTTTATATTTCTGCGTGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
2668996 CCATTTTTCTAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAA
* * **
2669061 GACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATT
388 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATT
* * * *
2669125 TTTTAGGAAGGATTTTTGGGCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
2669190 AAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAATGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
2669255 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGAGAGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
2669320 TGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** *
2669384 ACATCATGTGCGTAACCCCCCCGGCCCCCCCGATCGCCGTAACCCCAATGCCATCAGTCAGGTTC
712 ACATCATGTGCG-AACCCCCCCGGCCCCCCCGATCGCCG-AACCCCAATGCCGCCGGTCAGGTTC
* ** * * * * *
2669449 TCTGACGATGCTCCAACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
775 TCCGGTGATGCTCCAGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * * * *
2669514 CAGCATGTGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCATAAG
840 CAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* * * *** *
2669576 CTTAGACTGGCAATGAAATCCGTATGCCTAAGTCAACTCACGAATTGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * **
2669641 CTGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACGTGCTGCCGATCT
* *
2669706 TGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
* **
2669771 CAGACGAAACGAGCGGACGGGCGGACAACTGGGCGAAAACTGCGTCGGCCAGAGAGACGGGATAA
196 CAGACGAAACGAGCGGACGGGCGG-CGAC-GGGCG-AAACTGCG-CGGCCAGAGAGACGGGATGC
* * *
2669836 GCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
2669901 GCTATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCA
*
2669966 AGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
387 AGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
* *
2670031 TTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAT
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC
*
2670096 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
2670161 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
2670226 TGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGCGG-CAAGTACCAGCACCCATCG
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-GGCCAAGTACCAGCACCCATCG
* *
2670290 CACATCATGTGCACACAACACCCCGCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
711 CACATCATGTG--C-GAAC-CCCC-CCGGCCCCCCCGATCG-CCGAACCCCAATGCCGCCGGTCA
* * * *
2670354 GGTTCTCCGGTGATGCTCCAGCAATGGTGCCTTGGCAAAGAAAAATGCGGCACCAGCACATGCCT
770 GGTTCTCCGGTGATGCTCCAGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCT
** * * * *
2670419 GAGCCCTCCATGTGCTGCCGCAACCCTC-GATCTAGTCTGATCTTAGACTAGGAATGAACTTCGT
835 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACTAGGAATGAACTCCGT
2670483 ATG
899 ATG
* * *
2670486 CTTAGACTGGGAATGAACTGCGAATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * *
2670551 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCATTTACGTGCCGCCGATCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACGTGCTGCCGATCT
* * ** ** * **
2670616 TGCTGCTGCAATGCTCGGTAGGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
* * * * ** *
2670681 CCGACGAACCGAAG-GGGCGAGCGG-GA-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
196 CAGACGAAACG-AGCGGACGGGCGGCGACGGGC-GAAACTGCG-CGGCCAGAGAGACGGGATGCG
2670743 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
258 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
2670808 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAA
** * * *
2670873 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGATTCGGGATTTTTGAAAATTT
388 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
* * * * *
2670938 TTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTATTTTCGTTGGCATGCAGA
453 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACA
*
2671003 AAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAT
518 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-
* *
2671067 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
2671132 TGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAACTACCAGCACCTATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
2671197 ACATCATGTGCG--------C-ACCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGTTTCT
712 ACATCATGTGCGAACCCCCCCGGCCCCCCCGATCGCC-GAACCCCAATGCCGCCGGTCAGGTTCT
* *
2671253 CCGGTGATGCTTCGGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
776 CCGGTGATGCTCCAGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* * * * *
2671318 AGCATGTGCTGTCGTAACCCTCGGTCCGGTACGATCTTATACTAGGAATGAACTCCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* * * * * *
2671379 CTTAGACTCGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * *
2671444 CGGCCAGAGGGGTGGGATGCGCAAGTCGAGGATCGATAGGGT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGT
2671486 GGTAGGTGGG
Statistics
Matches: 1679, Mismatches: 207, Indels: 57
0.86 0.11 0.03
Matches are distributed among these distances:
892 1 0.00
893 238 0.14
894 2 0.00
901 6 0.00
902 184 0.11
903 1 0.00
904 4 0.00
905 6 0.00
906 848 0.51
907 51 0.03
908 3 0.00
909 7 0.00
910 320 0.19
911 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTTTACGTGCTGCCGATCT
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
CAGACGAAACGAGCGGACGGGCGGCGACGGGCGAAACTGCGCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGAACCCCCCCGGCCCCCCCGATCGCCGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
GATGCTCCAGCGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:2670512 original size:26 final size:26
Alignment explanation
Indices: 2670460--2670512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2670450 CTAGTCTGAT
* *
2670460 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTGCGAATG
*
2670486 CTTAGACTGGGAATGAACTGCGAATG
1 CTTAGACTAGGAATGAACTGCGAATG
2670512 C
1 C
2670513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGAATG
Found at i:2671382 original size:26 final size:26
Alignment explanation
Indices: 2671353--2671405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2671343 CCGGTACGAT
*
2671353 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
2671379 CTTAGACTCGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2671405 C
1 C
2671406 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2676539 original size:26 final size:26
Alignment explanation
Indices: 2676503--2676555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2676493 CCGATCCGAT
2676503 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
2676529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
2676555 C
1 C
2676556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:2677372 original size:897 final size:894
Alignment explanation
Indices: 2672971--2681865 Score: 11228
Period size: 897 Copynumber: 10.0 Consensus size: 894
2672961 TCCTATCTTG
* ** * *
2672971 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGAGCTCAGCCTGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
2673036 CAGAGGGGCGGGATGCGTAAACCGGGGATCGACCGGATCCCACTCTCCGTGCTGTCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * * **
2673101 ACCTCAACCCTCAGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
131 GCCGCAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
2673165 ACAAAATGAGCGGGTGGACGGACGGGCACTATGCTGGCCAGAGAGACGGGATGCACAAGCCGTGG
195 ACGAAACGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
2673230 ATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
256 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
2673295 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
321 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
2673360 TTTCTATTTTTCAAGATTTTCAAAACTTTTGGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGG
386 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* ** *
2673425 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTACTGGCATGCACAAAACAATTTA
451 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCA
2673490 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
515 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
2673555 TTAATGGCTACTGGCAGC--A-----AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
580 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
2673613 GGTTTGATGAGGGATAGGTGGCCAATATAAGGGTCAAGAACCAGCACCCATCGCACATCATGTGC
645 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * * * *
2673678 GCACACCCCGGCGGCCCCCCCGATCATCGGAACCCCAATGGCACCGGTTAGGTTCTCCGACGATG
710 GCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
** * * *
2673743 CTCCCACGATGGTGCCCCGACGAAGACAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGC
775 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
2673808 TACCACAACCCTCAGT-CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
840 TGCCGCAACCCTC-GTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
2673864 GACTGGGAATGAACTCCGT-TGCCTAAGTTAACCCACGAAAAGAGCGTGCGAGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** *
2673928 CAGAGGGGCGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * ** ** * *
2673993 ACTGCAACCCTCCTTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
2674058 CGAAATGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGT
196 CGAAACGAGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
2674123 TCGATAGGGTGCTAGGTGGGTTTGGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATT
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-T
*
2674188 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
321 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
2674253 TTTCTATTTTTCATGATTTTTGAAAC-TTTTACGGTTTGGGATTTTTTAAAATTTTTT-GGAAGG
386 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
2674316 AGTTTTGGCCCCAAACCTGGAAGACAT-ATCCTTGTATTTTTGTCGGCATGCACAAAAAATTCAG
451 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAG
* *
2674380 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTT
516 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * ** *
2674445 TGATTGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTCAAG
581 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
2674510 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
646 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * * *
2674575 CATACCCCCCCGGGCCTCCTGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATAC
711 CACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* ** * * * *
2674640 TCCGACGATTTTGCCCCGATGAAGAAAAATGC-GACACCAGCACATGCCCTAGCCCGGCATGTGG
776 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
2674704 TGCCGTAACCCTCAGTCC-AGTGCAATCTTGGACTGGGAACGAACTCCGTATGCTTA
840 TGCCGCAACCCTC-GTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
2674760 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCACTCAGCCAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
2674825 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTG-CAGATCCTAC
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTAC
* * ** *
2674889 T-ACGCCAACCCTCAGAATGGTCCAATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACC
130 TGCCG-CAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
2674953 GACGAAATGAACAGGCGGACGGGCGAGCGGGCACTACGCCGGCGAGAGAGACGGGATGCGCAAGC
194 GACG--A--AAC--G-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
***
2675018 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
251 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
2675083 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
316 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *** *
2675148 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCAAATTTTTTAAAA-TTTTTCA
381 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
2675212 GAAAGAGTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGAATTTTTGTTGGCAAGCACAAAAAC
446 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-
* * *
2675277 ATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCGG
510 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
2675342 ACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-CTTTTAAAGGGGTGTGAGT
575 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGT
* *
2675406 TCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCATCCATCGCACATC
639 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * * * * * *
2675470 ACGTGCGCACA-CCCCCCGTTCCCCCCGATCGCCGAAACCTCAATACCGTCGGTCAAGTTCTCCG
704 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
2675534 ACGATGCTCCGACGATGGTGCCCCAATGAAGAAAAATAC-GATAGCAACACAT-CCCTGAGCCCA
769 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCC-GAGCCCA
* *
2675597 GCATGTGCTGCTGCAA-CC-C-T-CG----G----T---CT--G---G---TCC-AAT-CTTA
832 GCATGTGCTGCCGCAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
2675635 AACTGGGAATGAACTCGGCATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * * *
2675700 CAGAGGGGTGGGATGCGTAAGCTGGGGATCGACCAGTTCTCCTTCTGTGTGTTGTCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * * *
2675765 ACCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGACCTCCGTATACCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * ** * *
2675830 TGAAACGAGCGGGCAGGCGGGCGCTACGCCGGCCAGAGAGATAGGATGCGTAAGCCTTGGATCGA
196 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
2675895 TAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
2675960 GTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** ** *
2676025 ATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAA-TTTTTCATAAAGAGTTT
391 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * ***
2676089 TGGGCCCAAACTTGGTAGACGAGATCCTTGTATTTTTACAGGCATGCACCAAAAAATTCAGCTAA
456 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAA
*
2676154 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
520 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
2676219 GGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGATGTGAGTTCTCGAGGTTT
585 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
2676284 GATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCACACA
650 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * **
2676349 CCCCCTCCGGCCCCTCCGATCGCCGTAACCCCAATGCCGCCGGTAAGGTTCTTCGGTGATGCTCC
715 CCCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* * * * *
2676414 GACGATGGATGCCCCGACGAAGAAAAACGTAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGT
779 GGCGATGG-TGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
2676479 CACAACCGTCAGGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTA
843 CGCAACCCTC--GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
2676533 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACGGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
2676598 CAGAGGGACGGGATGCGCAAGCTGGGGATCGACCGGGT-CGCCTCTACGTGCTATCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * * * *
2676662 GTCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGACCTCAGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
2676727 CGAAACGAGCGGGCGGGCGGGCGCTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
196 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
2676792 TAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
*
2676857 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * *
2676922 ATTTTTCACTG-TTTTCAAAAGTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
391 ATTTTTCA-TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
** * *
2676986 TTGGCTGCAAACCTGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAA
455 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAA
* *
2677051 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAT
520 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
2677116 GGCTACTGGCAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
585 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
2677181 GATGAGGGATACGGGTCCAATATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGTGCGCACA
650 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
2677246 CCCCCCCGCGCCCCCACCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTC
715 CCCCCCCG-GCCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * * ** * *
2677311 CGGTGATGGTGCCCCTACGAAGAAAAATGCAACGCCAGCACATTTCCGAGCCTAGCATGTGCTGT
778 CGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
2677376 CGCAA-CCT--T--G-TCCGATC-----C-------G-A-T-C----G--TA
843 CGCAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
2677401 GACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGAGCTCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *
2677466 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTACGTGCTGTCGATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * * * * *
2677531 ACCGCAATCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
2677596 TGAAACGAGTGGGTGGGCGGGCGGTCAGGCACTACGTCAGCCAGAGAGACGGGATACGCAAGCCG
196 CGAAACGA----GCGGGCGGGC-G---GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * ***
2677661 TGGATCAACAGGGTGGTAGGTGGGTTTAGGCACCTCTTCACATTTCTATGTGCCAATGCCATTTT
253 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
2677726 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
318 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** *
2677791 CATTTTCTATTTTTCAGGATTTTTGAAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTGGA
383 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
* **
2677856 AGGTGTTTTGGCCCCAAACACGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
448 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
* * * *
2677921 TTAGCTAAAAACTCGAAGTGCACAAGATTTTGGGACCATTTGAAAAAAATGTCCCCATTTCAGAC
512 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
2677986 ACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
577 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
2678051 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATG
642 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
2678116 TGCGCACA-CCCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCTCTGGCG
707 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * *
2678180 ATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATG
772 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
2678245 TGCTGCCACAACTCTCGATCC-AGTCCAATCTTAGACTGGGAATGAACTCCATATCCTTC
837 TGCTGCCGCAACCCTCG-TCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
2678304 GATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
** * ** * * * *
2678369 CAGAGGGATGGGATGCGCAAGCTGGGGATCGGTCGGGTCACCCTCTACGTGCTGTCAATCCTGCT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * ** * * *
2678434 GTCACAACCCTCAATCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** * **
2678499 CGAAACGAGCGGGTGGGCAAGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATAAA
196 CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*** *
2678564 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCTTTTTTATGGCTT
261 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
2678629 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
326 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
2678694 ATTTTTCTTGATTTTTTAAACTTTTTGGGGTTCAGGATTTTTTAAAATTTTTTCGGAATGAGTTT
391 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * * *
2678759 TGGCCCCAAACTTGGTAGATATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCCAA
456 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAA
*
2678824 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTGT-AGACACTTTAA
520 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAA
*** * *
2678887 TGGCTACTGGCAGCAAACCAACAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTT
584 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
2678952 TGATTAGGGATAGGGGGCCAATAGAAGGGCCAAGTA-CTGCACCCATCG-ACATCATGTGCGCAC
649 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
2679015 AGCCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGG-TCTCC-AGCGATGCTC
714 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTC
* ** * * * * *
2679077 C-GAGAT-GTG-CCCGGTGAAGAAAAATACGGCACAAGCACATGCCCAAGGCCAGCATGTGCTGC
778 CGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
2679139 CGTAA-CC-C-T-CG----G----T---CT--G-AT---C-CAG--T-CTTA
843 CGCAACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
2679166 GATTGGGAATGAACTCTGTATGCCTAAGTCAACACACGAAATGAGCGTGCGGGCGCTTAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
*** *
2679231 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* * *
2679296 GCCGCAACCCTCGGTCTAGTCTAATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
2679361 TGAAACGAGCGCGCGGGCGGGCGAGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
196 CGAAACGA--------GC--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
2679426 GCCGTGGATCGATAGGCTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
249 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
2679491 TTTTTATGACTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGAGAAGTTTCATGGCAAGAC
314 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
2679556 GACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTAT
379 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
*
2679621 CGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAG
444 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA-
* *
2679686 AAAAATCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
2679751 CAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * **
2679816 GCTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGTCCATCGCACA
637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
2679881 TCATGGGCGCACACCCCCCCGG-CCCCCCGA-CTGCCGGAACCCCAATGCCGCCGGTCAAGTTCT
702 TCATGTGCGCACACCCCCCCGGCCCCCCCGATC-GTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
2679944 CTGACGATGCTCCAGCGATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCT
766 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* * * *
2680009 AGCATTTGCTGCCGCAACCCTATGTCCGATCCGATCATAGACTGGGAATGAACTTCGTATGCTTA
831 AGCATGTGCTGCCGCAACCCT-CGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * * *
2680074 GACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGTGTACGGGCACCCAGCCGGG
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
2680139 CAGAAGGGAGGGATGCGTAAGCCGGGGATCAACCGGGTCCTCCTCTGCGTGCTGCCGATCCTACT
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
* ** * * * *
2680204 ACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTATGCCAACTGA
131 GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
2680269 CAAAACAAGCTGGCGGGCTGGCGTGCGAGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCG
196 CGAAAC--G--AGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
2680334 TGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
253 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
2680399 TATGGCTTGTAAATTCATACAATAGTCGCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACGACT
318 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * * *
2680464 CGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTTGAGATTCGTTT-AAATTTTTTAGG
383 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT-TTTTAAAATTTTTTCGG
** * *
2680528 AAGGA-TTTTTCCCCCAAACTTAGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAA
447 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
2680592 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
511 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
2680657 TACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTC
576 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
2680722 TCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGAACATCAT
641 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
2680787 GTGCGCACACCCCCCTGG-CCCCCCTATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC
706 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* **
2680851 GATGCTCCGGCGATGGTGCCTCGGGGAAG-AAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
771 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
* *
2680915 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
836 GTGCTGCCGCAACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
2680975 GACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCCGGCGCTCAGTCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
2681040 CAGAAGGGCGAGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGTGCGCTG-CTGATCCT-G
66 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCCTAC
* ** *
2681103 TAGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
130 T-GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
2681168 GACAAAACGAGCGGGTGGGCGGGTGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGTCGTG
194 GACGAAACGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
2681233 GATCGATAGGGTGGTA----GGTTTAGGCACATATTCATATTTTTGCATTCCAATGCCATTTTTA
255 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
** * * *
2681294 TGGCTTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGACAAGACGACTCA
320 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
2681359 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAG
385 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* ** *
2681424 GTGTTTTCACCCCAAACTTGGTAGAAGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTC
450 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTC
*
2681488 AGCTAAAAACTC-AAGGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACA
514 AGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2681551 CTTTAATGGCTACTGTCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
2681616 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** * * **
2681681 GCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGTTGCCCGTCAAGTTCTCCGGTGA
708 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * ** * *
2681746 TGCTCCGGTGATGGTGCCCTGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGT
773 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
2681811 GCTGCTGCAACCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGC
838 GCTGCCGCAACCCTC-GTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
2681866 CTAAGCCAAC
Statistics
Matches: 7001, Mismatches: 810, Indels: 381
0.85 0.10 0.05
Matches are distributed among these distances:
862 185 0.03
863 1 0.00
865 1 0.00
866 1 0.00
867 434 0.06
868 130 0.02
869 91 0.01
870 59 0.01
871 47 0.01
872 7 0.00
873 13 0.00
874 272 0.04
875 327 0.05
876 125 0.02
877 285 0.04
878 252 0.04
879 14 0.00
880 6 0.00
881 4 0.00
882 52 0.01
883 4 0.00
884 2 0.00
885 3 0.00
886 2 0.00
887 4 0.00
888 58 0.01
889 96 0.01
890 35 0.00
891 43 0.01
892 493 0.07
893 399 0.06
894 232 0.03
895 320 0.05
896 280 0.04
897 769 0.11
898 200 0.03
899 12 0.00
900 105 0.01
901 515 0.07
902 324 0.05
903 391 0.06
904 219 0.03
905 12 0.00
907 1 0.00
908 175 0.02
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTACT
GCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG
CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
Found at i:2680082 original size:26 final size:26
Alignment explanation
Indices: 2680046--2680096 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2680036 GATCCGATCA
*
2680046 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
2680072 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2680097 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2680974 original size:26 final size:26
Alignment explanation
Indices: 2680945--2680997 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2680935 CTGGTCCGAT
2680945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2680971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2680997 C
1 C
2680998 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2682601 original size:26 final size:26
Alignment explanation
Indices: 2682550--2682602 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2682540 CTGATCCGAT
* * *
2682550 CTTAGACTGGGAGTGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2682576 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2682602 C
1 C
2682603 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2683485 original size:26 final size:26
Alignment explanation
Indices: 2683449--2683501 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2683439 CCAATCCAAT
2683449 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
2683475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
2683501 C
1 C
2683502 CAAAGTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:2684126 original size:903 final size:897
Alignment explanation
Indices: 2681818--2692413 Score: 13948
Period size: 904 Copynumber: 11.8 Consensus size: 897
2681808 TGTGCTGCTG
* * *
2681818 CAACCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
2681883 ACGAGGGGGCGGA--GGCGGGCACTACGCTGACCAGAGAGACAGGATGCGCCA-CCTGTGGATCG
66 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCG
* * *
2681945 ATAGAGTGGTACGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
2682010 TGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * * *
2682075 TATTTTTTATGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
2682140 TT-ACCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
2682203 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTA
*
2682268 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
2682333 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCACA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* *
2682398 CACCTACCCC-GACCCCCGATCGTCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
584 CACC--CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTC
* * * * * * * * *
2682462 CGATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAACACATGCCCGAGCCTAACATCTACTGT
646 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * ** *
2682527 CACAACCCTCGGTCTGATCCGATCTTAGACTGGGAGTGAACTCTATATGCTTAGACTAGGAATGA
711 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
2682592 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCAGCCAGAGGGGCAGG
776 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** *
2682657 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCTGATCTTGCTGCCA
841 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
** * * * *
2682714 CAACCCTTGGGTC-GGTCTGATCTTAGATTTGGAATGAACTCCGTATGCCTAAGCCAACCAATGA
1 CAACCC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * ** *
2682778 AACGAGCGGGCGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGCATGCGCAAGTTGTGGATGG
65 AACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
2682843 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCGTGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
2682908 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2682973 TATTTTTCACGATTTTTTAAACTTTTTACAGTTTGTGATTTTTTAAAATTTTTTCGGAAGGATTT
260 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
2683038 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTATTT-TTGGCATGCATAAAAAAATTCAGCT
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCT
2683102 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
2683167 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
2683232 TTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * ** *
2683297 CACTCTCTGGCCCCACCGATCATCGTAACCCTAATGCTACCGGTCAAGTTCTCCAGCGATGCTCC
584 CACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCC
* ** * *
2683362 GATGATGGTGCCCCGGGGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
647 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** * *
2683427 GTAACCCTCGGTCCAATCCAATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
712 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * *
2683492 CTCCGTATGCCAAAGTTAAGCCACGAAATGAGCGAGCGGGGGCTCAACCGGCCAGAGGGGCGGGA
777 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
2683557 TGCACAAGTCGAGGATCGGCCTGGTCCCCCTCTACGTGCTGCTGATCCTGCTGTCA
842 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* *
2683613 CAATCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
2683678 ACGAGCGGGCGGACGGGCAGGTGCGCTTTACGTCGGCCAGAGAGACGAGATGCGCAAGCTGTGGA
66 ACGAGCGGGCGGACGGGC-GG-GCAC--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
2683743 TCAATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* ** *
2683808 GCTTGCAAATTCATACAATACTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
2683873 TTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTGGGGATTTTTTAAATTTTTTTCGGAAGGG
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
2683938 GTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAATCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
2684002 CTAAAAACTTGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
387 CTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2684067 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCAA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
2684132 GGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
2684197 GCACA-----C-G--CCCC---C-T-GGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGATGCT
581 GCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCT
* * ** *
2684249 TCGACGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
645 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
2684314 CCGCAACTCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATG
710 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * ** *
2684379 AACTGCGTATGCCTAAGTCCACCCACGAGACAAGCGTACGGATGCTCAGCCGGCCAGAGGGGCAG
775 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * *
2684444 GATGCGCCAGTCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGTTGATCCTGCTACCT
840 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* * * *
2684502 CAA--CTC-GATTTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCGAACCGACGA
1 CAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
2684564 AATGAGCGGGCGGGCGGGC-GGCACTACACCGGCCAGAGAGACGGGATGCGCGAGCCGTGGATCG
65 AACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
2684628 ATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACATGCAAATGCCATTTTTATAGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
2684693 TTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2684758 TATTTTACACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAACTTTTTTTGGAAAGAGT
260 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGT
** *
2684823 TTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-TGCC
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-C
* * *
2684887 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTCCGGACACTTT
388 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
2684952 AATGGCTACTGGCAACAAACCTGTAAAATCTTAAATGCTCTTTAAGGGAGCGTGAGTTCTCGAGG
453 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
**
2685017 TTTGATGAGGGATATAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * * *
2685082 ACTCCCCCCCGGCCCCCTAGATTGTCGGAACCTCAATGTCGTCGGCCAGGTTCTCGGGCGATGCT
583 AC-ACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CGCGATGCT
* * * *
2685147 TCGACTATGGTGCCCC-AGCAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCT
645 CCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
2685211 GTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
709 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* ** * * * * * ** *
2685276 GAACTCCGTATGCCTAAGTCCACCCACGAAATAAGCGTACGGACGCTTAACTGGTTAGAGTGGCG
774 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * ** * *
2685341 GGATGCACAAGTCGGGGTTCGGCCGGGTACCCCTCTATATGCTG-TCAATCTTGCTGCCA
839 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCA
* * * * *
2685400 CAACCCTCGGTCCT-GTCCGATCTTAGACTGAGAAAGAACTACGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * *
2685464 AATGAGCAAGCAGCGGGCAGGTGGGCACTACACCGGCCAGAGAGACAGTATGCGCAAGCCGTGGA
65 AACGAGC--G-GGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
2685529 TCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTT-TGGCGTGCCAATGCCATTTTTAT
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTAT
* *
2685593 GGCTTGTCAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
191 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
2685658 TTTCTATTTTTCACAATTTTCAAAACATTTTACGGTTCAGAATTTTTTAAAATTTTTTCAGAAGG
256 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
2685723 ATTTTTGGCCCCAAACTTGGTAGACGTGATCGTTATATTTTTTTTGGCATGCACAAAAACATTCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
2685788 GCAAAAAACTCGAAGTGTACCAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
386 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2685853 TTATTGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
2685918 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGTACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
2685983 GCACA-CCCCCGGCCCCCCCGATCGCCAGAATCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGC
581 GCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGC
** * *
2686047 TCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTT
644 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** * *
2686112 GCCGCAACTCTCGGTCTAGTCCGATCATATACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
709 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
2686177 GAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGTG
774 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* ** *
2686242 GGATGCGCAAGCCGTGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCCA
839 GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* *
2686301 CAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGTCGA
1 CAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * *
2686365 AA--AGAGAG-GG-CGGGCGGGCACTATGCCAGCCAGAGAGACAGGATGCGTAAGCCATGGATCG
65 AACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
2686426 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCGCATGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
2686491 TGGAAATTCATACAATGGTCTGC-TAAG-CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
195 TGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
2686554 CTATTTTTCACGATCTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTCGAAAGGAG-
259 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
2686618 GTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
2686683 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTA
389 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
2686748 ATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGAGCGTGAGTTCTCAAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
2686813 TTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGTGCGCA
519 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* ** * ** *
2686878 CACCCCCCCGACCCCCAAAATCATCGGAACCCCAATGCCGCTAGCCAGGTTCTCCGACGATGCTC
584 CA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTC
* * * *
2686943 CGACGATGGTGCCCCAACAAAGAAAAATACTGGCACCAGCACAGGCCCGAGCCCAGCATGTGCTG
646 CGACGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
2687008 CCGTAACCCACGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATG
710 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * *
2687073 AACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCGG
775 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* **** * * * * * * *
2687138 GATGCGCAAGCCGTGGATCGATATGGTCCCCCCCTGCATGCTACCGATCCTGCTACCG
840 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* * * * * *
2687196 TAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATACCGAAGCCAACTGTCGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
2687261 ACGAAAGGGCGGGCTGACGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGA
66 ACG--A--GCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
2687326 TCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
2687391 GCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
2687456 TTCTATTTTTCATGATTTATGAAAATTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
2687521 G-GTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
2687585 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
2687650 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGCGTGTGTGCTCAAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
2687715 TTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-GACACATCATGTGC
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CACATCATGTGC
* * * *
2687779 GCACAGCCCCCCCGACCCCCCAGATCGTCGGAACCCCAATGTCGTCGGCCAGGTTCTCCGGCGAT
581 GCACA--CCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGAT
* * * * * *
2687844 GCTTCGACGATGGTGCCCCAACAAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTG
642 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
2687909 CTACCGCAA-CC-C--T-C--T--G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGA
707 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
2687948 ATGAACTTCGTATGCCTAAGTTAACCAACAAAACGAGCGTGCGGGAGCTCAACCGGCTAGAGGGG
772 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * *
2688013 CGAGATGCGCAAGCCGTGGATCGGTCGGGTCCCCCTCTACGTGCT-CTCGATCCTGCTACCA
837 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCA
* * * * *
2688074 CAACCCTTAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGTCGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
2688139 ACGA-------G-CGGGCGGGCACTACGTCGGCCAGAGAGATGGGAAGCGTAAGTCGTGGATCGA
66 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* **
2688196 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * * *
2688261 GGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTTT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * *
2688326 ATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
2688391 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
326 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
2688456 AAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
391 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
2688521 GGCTA-TGGCTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
456 GGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* ** *
2688585 TGATGAGGGATAGGGTGCCAATATAAGGGCCAACCACCAGCACCCATTGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
2688650 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-C---G----G-
585 ACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGA
*
2688705 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGC
649 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
2688770 AACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAGTGAACT
714 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
2688835 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGACGGGATG
779 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * * * ****
2688900 CGTAAGCCTGGGATCAACCGGGTGCCCCTCTACGTGTTGCCGATCCTGCTTTTG
844 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* * * * * *
2688954 CGACCCTCAATCCGATCCGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
2689019 ACGAGCGAGCGGGCGGGCGGACCGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGA
66 ACGAGCGGGCGGACGGGC-G---GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ***
2689084 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTATGTGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
2689149 GATTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * **
2689214 CTCTATTTTTCACGATTTTTGAAACTTTTTAGGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
*
2689279 GTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
2689343 CTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
2689408 TAATGGATACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTCT-AGGGGGTGTGAGTTCTCGA
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGA
*
2689472 GGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
516 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** ** * **
2689537 GCACACCCTCCCTGGCCCCCCCGATCACCGGAACCCCAATGCCGCTAGTCAGGTTCTCTGATAAT
581 GCACACCC-CCC-GG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGAT
* * * * * * * *
2689602 GCTCCGGCGATGGTGCCCCAACGAAGAAAAATACGACACCAGTACATTCCAGAGCCTAGCATGTG
642 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
2689667 CTGCCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGA
707 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
2689732 GTGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGA
772 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * *
2689797 CGGGATGCGTAAGCCAGGGATCGGCGGGGTCCCCCTCTGCATGCT-ATCGATCTTGGTGCCA
837 CGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCA
* * * *
2689858 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGGA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
2689923 ACGAGTGGGCGGGCGGGCGGGCGGGTACTATGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGA
66 ACGA----GCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
2689988 TTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
2690053 GCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
2690118 TTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCAGAAGGA
257 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
2690183 GTTTTAGACCCAAACTTGGCAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAG
322 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
2690247 CTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTAAGACACTT
387 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
2690312 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
452 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
2690377 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCC
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
**
2690442 CACAACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCCGCGATG
582 CAC-ACCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CCGCGATG
** * * * * *
2690507 CTCCGGTGATGGTGCCCTGGCGAAGAAAAATGCGGCACTAGCACATGCTCGACCCCAGCATGTGC
643 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
2690572 TGTCGTAACTCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
708 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
2690637 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGC
773 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * ** **
2690702 GGGATGCGCAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTATCA
838 GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* * *
2690762 CAA--CTCGGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A
* *
2690825 ACGAGCGAGCGGGTAGGCGGACGGGCCGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
65 A--A-CGAGC--G--GGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
2690890 TGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTT
123 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
2690955 TCTGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACAACT
188 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
2691020 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGA
253 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* **
2691085 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTCT-TAGCTTTGTTGGCATGCACAAAAAAA
318 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT-TGTATTTTTGTTGGCATGCACAAAAAAA
2691149 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
382 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
2691214 CACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTG
447 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
2691279 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCAT
512 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
2691344 GTGCGCACACCCCCCGACCCCTCCGATCGTCGGAACCCCAATTCCGCGGGTCAAGTTCT-C-C--
577 GTGCGCACACCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGA
* * * **
2691405 -G----G-CGATGGTGCCCAGGCGAAGAAAAATGTGGCACC-GACACATGCCCGATTCCAGCATG
641 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATG
** * * * *
2691463 TGCCACCGCAACCCTCGGTCCTGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAG
705 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
2691528 GAATGCACTCCGTCTGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGG
770 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * *
2691593 GGTGGGATGTGTAAGCCGGGGATCAGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
835 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
* ** * ** *
2691656 CAACCCTCATTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAATTGATGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
2691721 ACAAGCGGGC--A--GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGA
66 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
2691782 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GCGT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC-T
* *
2691846 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
2691911 TATTTTTCAGGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTCTTTCAGAAGGAG-T
260 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
2691975 TCGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
2692040 AAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTTAGATACTTTAA
390 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
2692105 TGGCTACTGGCAGCAAACTTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
** *
2692170 TGATGAGGGAT-GAGCTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCA
520 TGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
2692234 CACCCCCCCGGCCCCCTCGATCGCCGGAACCTCAATGCCGCCTGTCAGGTTCTCCGACGATGCTC
584 CA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTC
** * * *
2692299 CGGTGATGGTGCCCCGATGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGC
646 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
2692364 CGGAACCCTTGGTCCGGTCTGATTTTAGACTAGGAATGAACTCCGTATGC
711 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
2692414 CTAAGCCAAC
Statistics
Matches: 8573, Mismatches: 950, Indels: 355
0.87 0.10 0.04
Matches are distributed among these distances:
854 60 0.01
855 3 0.00
856 1 0.00
858 1 0.00
859 2 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 39 0.00
866 233 0.03
867 241 0.03
868 1 0.00
870 1 0.00
871 2 0.00
873 1 0.00
876 3 0.00
877 1 0.00
878 177 0.02
879 4 0.00
880 173 0.02
881 1 0.00
882 192 0.02
883 465 0.05
884 306 0.04
885 3 0.00
886 2 0.00
887 73 0.01
888 11 0.00
889 252 0.03
890 4 0.00
891 242 0.03
892 475 0.06
893 134 0.02
894 410 0.05
895 356 0.04
896 116 0.01
897 13 0.00
898 471 0.05
899 526 0.06
900 111 0.01
901 317 0.04
902 113 0.01
903 824 0.10
904 1555 0.18
905 155 0.02
906 272 0.03
907 214 0.02
908 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCA
Found at i:2684367 original size:26 final size:26
Alignment explanation
Indices: 2684338--2684390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2684328 CCGATCCGAT
2684338 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2684364 CTTAGATTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2684390 C
1 C
2684391 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2685265 original size:26 final size:26
Alignment explanation
Indices: 2685236--2685288 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2685226 CTGGTCCGAT
*
2685236 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2685262 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2685288 C
1 C
2685289 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2687061 original size:26 final size:26
Alignment explanation
Indices: 2687032--2687084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2687022 CTGGTCCGAT
*
2687032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2687058 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2687084 C
1 C
2687085 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:2689723 original size:26 final size:26
Alignment explanation
Indices: 2689694--2689746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2689684 CCGGTCCGAT
* *
2689694 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2689720 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2689746 C
1 C
2689747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2690627 original size:26 final size:26
Alignment explanation
Indices: 2690598--2690650 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2690588 CCGGTCCGAT
2690598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2690624 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2690650 C
1 C
2690651 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2694135 original size:704 final size:705
Alignment explanation
Indices: 2691648--2694396 Score: 3579
Period size: 736 Copynumber: 3.8 Consensus size: 705
2691638 CTGCCGATCC
* * *
2691648 TGCTGCCGCAACCCTCATTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*** * * * * *
2691713 TTGATGA-AACAAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGG
66 CCAAAGACAACGAGC-GG-AGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
2691777 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
2691842 GCGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCAT
194 GC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
** * * *
2691907 TTTCTATTTTTCAGGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTCTTTCAGAAGG
258 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
2691972 AG-TTCGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
2692036 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTTAGATACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2692101 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** * * *
2692166 GGTTTGATGAGGGATGAGCTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGC
518 GGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCATGTGC
* * *
2692231 GCACACCCCCCCGGCCCCCTCGATCGCCGGAA-CCTCAATGCCGCCTGTCAGGTTCTCCGACGAT
582 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCT-AATGCCG-CGGTCAGGTTCTCCGGCGAT
*
2692295 GCTCCGGTGATGGTGCCCCGATGAAGAAAA-ATGCGACACCAACACATGCCCGAGCCCAGCATG
645 GCTCCGGTGATGGTGCCCCGATGAAGAAAATATG-GAC-CC-GCACATGCCCGAGCCCAGCATG
* ** * *
2692358 TGCTGCCGGAACCCTTGGTCCGGTCTGATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
2692423 CCGAAGAACAAGCGGGCCGACCGGGTGGGCGAGCAGG-GCTGGCACTACGCCGGCCAAAGAGACG
66 CCAAAG-ACAA------CGA--------GCG-G-AGGTG--GGCACTACGCCGGCCAGAGAGACG
* * * *
2692487 GGATGCGCAAGCCCTGGATTCGATAGGTGTGGTAGGTTGCG-TTAGGCACATCTCCATATTTCTA
112 GGATGCGCAAGCCGTGGA-TCGATAGG-GTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTG
*
2692551 CGTGCCAATGGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-CGTGAAG
174 CATGCCAAT-GCCATTTTTAT-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* **
2692614 TTTCATTGCAAGAACGACTCATTTTCTATTTTTCACAATTTTCCAAAAACTTTTTACGGTTCGAG
237 TTTCATGGCAAG-ACGACTCATTTTCTATTTTTCACAATTTT--TGAAACTTTTTACGGTTCGAG
* * * * * *
2692679 ATTCTTCAACATTTTTTCGAACAGTAGTTTTGGCCCCGAAAACTTGCTAGACCGTGATCCTTGTA
299 ATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGCCCC--AAACTTGGTAGA-CGTGATCCTTGTA
* *
2692744 TTTTTGTTGGCATACACAAAAAAAATT-AGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCAT
360 TTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
2692808 CTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAACAAACTTGTAAAATCTCAA
424 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
2692873 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGGGGGATAGCAGGCCAATATAAGGGCCA
489 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCA
* * * * *
2692938 AGTACTAGCACCCATCGCACATCATGTGCGCGCA-CCCCCCGGCCCCCCCGATCGCCGGAACCCC
553 AGTACCAGCACCCATCACACACCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCT
* * *
2693002 AATGTCGCAGGTCAGGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGACGAAGAAAA-ATGCGG
618 AATGCCGC-GGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAATAT--GG
*
2693066 CACCAGCACATGCCCGAGCCCAGCATG
680 -ACCCGCACATGCCCGAGCCCAGCATG
* *
2693093 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-CTCA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CA
** * * * * *
2693157 ACCGATGAAACGAGCGGGCGAGCGGGCGGATAGGCACTACGACGGCCAGAGAGACAGGATGCGTA
65 ACC----AAA-GA-C-AACGAGC-GGAGG-TGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
2693222 AGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
121 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
2693287 ATTTTTAATGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGA
186 ATTTTT-ATGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
2693352 CAACTCGA-TTTCAATTTTTCATGATTTTCGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTT
250 CGACTC-ATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
2693416 TTCGGAAGTAGTTTT-GCCCCAAACTTGATAGACGTGATCGTTGTATTTTTGTCGGCATGCACAA
314 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
2693480 AAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATT
379 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
2693544 TC-GTACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
444 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
2693608 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACA
508 GAGTTCTCGAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCACA
*
2693673 CACCATGTGCGCACACCCCCCCCAGCCCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTT
572 CACCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGCCG-CGGTCAGGTT
* * * *
2693738 CTCTGGCGGTGCTCCGGTAATGGTG-CCCGATGAAGAAAATTATGGTACCCGCACATGCCCTAGC
635 CTCCGGCGATGCTCCGGTGATGGTGCCCCGATGAAGAAAA-TATGG-ACCCGCACATGCCCGAGC
2693802 CCAGCATG
698 CCAGCATG
** * * *
2693810 TGCTGCCGCAACCCTCAGTGTGGTCCGATCTTAGACT-GGACTGAATTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
2693874 CCAAAGA-AACGAGC-G-GGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 CCAAAGACAACGAGCGGAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
2693936 AGATAGGGTGGTAGGTGGGTTTAGGAACATATTCATATTT-TAG-AGTGCCAATGCCATTTTTAT
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCA-TGCCAATGCCATTTTTAT
* *
2693999 GGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCAT
194 -GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* *
2694064 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGACATTTTTTAAAATATTTTT-GGAAG
258 TTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAG
* * * *
2694128 GAGTTTTGGCCCCAAACTAGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCTCAAAAACATTC
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
2694193 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2694258 TTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
2694322 AGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCAT-ATCAGATCCATC
517 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACA-CCAT-
2694386 GTGCGCACACC
578 GTGCGCACACC
2694397 ACTCGACCCC
Statistics
Matches: 1800, Mismatches: 163, Indels: 156
0.85 0.08 0.07
Matches are distributed among these distances:
703 5 0.00
704 210 0.12
705 149 0.08
706 90 0.05
707 10 0.01
708 5 0.00
710 60 0.03
711 3 0.00
712 5 0.00
715 3 0.00
716 188 0.10
717 128 0.07
718 77 0.04
719 3 0.00
720 5 0.00
721 9 0.00
722 35 0.02
723 7 0.00
724 98 0.05
725 31 0.02
726 46 0.03
727 42 0.02
728 27 0.01
729 102 0.06
730 9 0.00
731 33 0.02
732 4 0.00
733 7 0.00
734 2 0.00
735 175 0.10
736 215 0.12
737 12 0.01
739 3 0.00
740 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (705 bp):
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAAAGACAACGAGCGGAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
CTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCATGTGCGCAC
ACCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGCCGCGGTCAGGTTCTCCGGCGATGCTCCG
GTGATGGTGCCCCGATGAAGAAAATATGGACCCGCACATGCCCGAGCCCAGCATG
Found at i:2695459 original size:26 final size:26
Alignment explanation
Indices: 2695430--2695479 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2695420 CGATCCGATC
2695430 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
2695456 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
2695480 CCCAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:2696573 original size:26 final size:26
Alignment explanation
Indices: 2696544--2696594 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2696534 CCGATCTTAA
* *
2696544 ACTGGGAGTGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATCCCTAG
2696570 ACTGGGAATGAACTCCGTATCCCTA
1 ACTGGGAATGAACTCCGTATCCCTA
2696595 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATCCCTAG
Found at i:2697484 original size:26 final size:26
Alignment explanation
Indices: 2697448--2697500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2697438 CTGGTCTGAT
2697448 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2697474 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2697500 C
1 C
2697501 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2698028 original size:904 final size:882
Alignment explanation
Indices: 2695814--2698234 Score: 3083
Period size: 892 Copynumber: 2.7 Consensus size: 882
2695804 ATCTTAACCG
* *
2695814 CAACCCTCAGCCCGTGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCCTAAGCCAACCGATG
1 CAACCCTCAGTCC-TGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGATG
* * * *
2695879 AAACGAGCAGGCGGGCGGGCGAGCACTACGGCCGGCTAGAGAGACGGATGCGCAAGCTGTGGATC
64 AAACGAGCGGGCGGGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATC
2695944 GATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCCATTTTTATGG
128 GATAGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG-CCATTTTTATGG
*
2696009 CTTCTAAATTCAT-CAATGG-CCCTTGAAGCCTTCACATGAAGTTTCATGGCAAGAT-GACTCAT
191 CTTCTAAATTCATACAATGGTCCCTT-AAGCCTTCACATGAAGTTTCATGGCAAG-TCGACTCGT
* * * *
2696071 TTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTTAAAATTTTTCTCGAA
254 TTTCTATTTTTCATGATTTTTGAAACTTTTT-CGGTTTGGGA--TTTTTTAAAATTTTTTTGGAA
2696136 GGGGTTTTGGCCCCAAACTTGGTAGACATGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATT
316 GGGGTTTTGG-CCCAAACTT-GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
2696200 CAGCTAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC-AGA
379 CAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAGA
* * *
2696264 CACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTC
443 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
2696329 TCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGTACATCA
508 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTC--ACATCA
* * **
2696393 TGTGTGCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGT
571 TGTGCGCACACCCCCCCAGCCCCCCCATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGAC
* * *
2696458 GATGCTCTGGCGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATCTGCTGCAGTAACC
636 GATGCTCTGGCGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATCTGCTGCACTAACC
* * *
2696523 CTTGGTCTGGTCCGATCTTAAACTGGGAGTGAACTCCGTATGCCTAGACTGGGAATGAACTCCGT
701 CTCGATCTGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGT
* * ** *
2696588 ATCCCTAAGTCAACCCACGAAACGAGGGTGTGGGGGCTCAACCAGCCAGAGGGAAGGGACGCGCA
766 ATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCAGCCAGAGGGAAGGGACACGCA
* * ** *
2696653 AGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTATCGATCCTGCTGTCGTA
831 AGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCCAACTGTCGCA
* * * *
2696705 -AACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
1 CAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* *
2696769 ACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAAAGACGGAATGCGCAAGCCGTGGA
66 ACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG-ATGCGCAAGCCGTGGA
*
2696834 TCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTTTATG
126 TCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * ** *
2696899 GCGTCTAAATTCATACAATGGTCCTTTAAGCCTTCACACGAAGTTTCATGTTAAGACGACTCGTT
190 GCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGTCGACTCGTT
* * * * *
2696964 TTCTATTTTTCATGATTTTTTAAACTTATTGGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGGG
255 TTCTATTTTTCATGATTTTTGAAACTTTTTCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGGG
* * * * * *
2697029 TTTTGCCCCAAACTATATAGACGTGCTCATTGTATTTTTGTTGGCAATGCCAAAAAAAAAATTCA
320 TTTTGGCCCAAACT-TGTAGACATGATCCTTGTATTTTTGTTGGC-ATG-C-ACAAAAAAATTCA
*
2697094 GCTAAAAACTCGCAA-TGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCA-TTCAAGAC
381 GCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTATCCCCATTTCAAGAC
* *
2697157 ACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGATCT
444 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
2697222 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACATCATG
509 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT-CACATCATG
* * * * * *
2697287 TGCGCACGAGCCCCCCGGCCCCCCCAGTTGTGCCGTAA-CCTAATGCCGTCGGTCAGGTTCTCCG
573 TGCGCAC-ACCCCCCCAGCCCCCCCA-TCGT--CGGAACCCCAATGCCGTCAGTCAGGTTCTCCG
**
2697351 ACGATGCTCCGACGATGGTACCCCGGCAAAGAAAAATGCAGTGCCAGCACATGCCTGAGCCCAGC
634 ACGATGCT----C--TGG-----C-G--AAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGC
* * * *
2697416 ATGTGCTGC-CTCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
685 ATCTGCTGCACT-AACCCTCGATCTGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAGA
* *
2697480 CTGGGAGTGAACTCCGTATGCCC-AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCC
749 CTGGGAATGAACTCCGTAT-CCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCAGCC
** * * *** *
2697544 AGAGGGGCGGGATACGCAAGTCGGGGATCAGTTGGGTCCCCCTCTGCGTGCTGCCGATCCAACTG
813 AGAGGGAAGGGACACGCAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCCAACTG
2697609 -C-CA
878 TCGCA
* * ** *
2697612 CAACCCTCGGTCCTGTCCGATCTTAGA-TAGGGAATGAACTCTATATGCTTAAGCCAACCGATGA
1 CAACCCTCAGTCCTGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
** * *
2697676 AACGAGCGGGCGGGCGGGCGGGCACTACGTAGGCCAGAGAGACAGGATGTGCAAGCCGTGGATTG
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCG
* * * *
2697741 ATATGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGTCGATGCCATTTTTATGGCT
129 ATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * * * *
2697806 TCTAAATTCGTAGAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGTCGACTCGTTTTT
193 TCTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGTCGACTCGTTTTC
* *
2697871 TATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTTGGAAGGAGT
258 TATTTTTCATGATTTTTGAAACTTTTT-CGGTTTGGGATTTTTTAAAA-TTTTTTTGGAAGGGGT
* *
2697936 TTTGGCCCAAACTTGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATGTCAGCTA
321 TTTGGCCCAAACTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-TCAGCTA
* *
2698001 AAAACTCGAAGTGTACAAGTTTTTTGTGACCATTTGAAAAAAGTATCCGCATTTCAAGACACTTT
385 AAAACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAGACACTTT
*
2698066 AATGGCTACTGACCAGCAAAACCTGTAAAAATCTCAAATGCTCTTTAAAGGGGCGTGTGAGTTCT
449 AATGGCTACTG-GCAGC-AAACCTGT-AAAATCTCAAATGCTCTTT-AAGGGG-GTGTGAGTTCT
* * * * *
2698131 CCGAGGTTTGATGTGGAAATAGGGGGGCCGATATCAGGGCCAAGTACCAGCACACATTCGACATC
509 -CGAGGTTTGATGAGG-GATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTC-ACATC
*** *
2698196 ATGTGCGCACA-CCCCTTGGCCCCCCGATCGTCGGAACCC
570 ATGTGCGCACACCCCCCCAGCCCCCCCATCGTCGGAACCC
2698235 TAGTGCCACC
Statistics
Matches: 1325, Mismatches: 147, Indels: 99
0.84 0.09 0.06
Matches are distributed among these distances:
888 36 0.03
889 75 0.06
890 13 0.01
891 83 0.06
892 312 0.24
893 22 0.02
894 4 0.00
895 30 0.02
896 4 0.00
899 1 0.00
901 3 0.00
902 10 0.01
903 37 0.03
904 230 0.17
905 51 0.04
906 34 0.03
907 25 0.02
908 67 0.05
909 206 0.16
910 30 0.02
911 5 0.00
912 47 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
CAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATCGAT
AGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCT
AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGTCGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGG
CCCAAACTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTCACATCATGTGCGCACACCCCC
CCAGCCCCCCCATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCTGGCGAAG
AAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATCTGCTGCACTAACCCTCGATCTGGTCCGA
TCTTAAACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCACTCAACCAGCCAGAGGGAAGGGACACGCAAGCCGGGGATCAGCC
AGGTCCCCCTCTGCGTGCTACCGATCCAACTGTCGCA
Found at i:2701372 original size:903 final size:902
Alignment explanation
Indices: 2699287--2701816 Score: 3365
Period size: 906 Copynumber: 2.8 Consensus size: 902
2699277 NNNNGGGGTG
* * * **
2699287 CGCACATGATGTGCGATAGGTGCTGGTAGTTGGCCTTTATATTGGCCCTTTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTA-CTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
2699352 CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
65 CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
2699417 AGTGTTTGAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
130 AGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
2699481 CTGAATTGTTTTCTGCATGCCAACGAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAAC
194 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
* * * * *
2699546 CCCTT-CTGAAAAAATTTTCAAAAATCCCGAATCATAAAAAGTTTTGAAAATCGTGAAAAATAGA
259 TCCTTCCT-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
2699610 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
323 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
**
2699675 CCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
388 CCATAAAAAT-GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
2699740 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-TAGT-GCCCGCCCTCCTGCTCG-CCCCT
452 ATCCA-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTA-TCGCCCGCCGTCC-GCCCGTCCGC-
* * * * **
2699802 TCGGTTCGTCGGTTGGCTTAGGTATACAAAGTTCATTCCCAGTCTAAGATCAGACCCTACCG-AG
513 TCGATTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAG
* * * * * ** * *
2699866 CATTGCAGCAGCAAGATCGGCGGCACGTAAATAGGGAACCGACCGATCCCCGGCTTGCGCATCCC
578 -GTTGCGGTAGCAGGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * *
2699931 ACCCCTCTGGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATTCGCAGTTCA
642 ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
2699996 TTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCGGCA
707 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACGAGACCGAGGGTTGCGGCA
* ** *
2700061 GCACATGGAGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAAGGCACCATTGCTGGAG
772 GCACATGCAGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGCTGGAG
* * *
2700126 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGCGGGGTGTTG
837 CATCACCAGAGAACCTGACCGACGGCATTGGGGTTACGACGATCGGGGGGGCC-GCGGGGTGTTG
*
2700191 TG
901 TA
* * *
2700193 TGCACATGATGTGCGATGGGTGCTGGTACTTGCCGCTTAAATTGGCCCCCTATCCCTCATCAAAC
1 CGCACATGATGTGCGATGGGTGCTGGTACTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
2700258 CTCGAAAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
65 CTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
2700323 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
129 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
2700388 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAC
194 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
* * *
2700453 TTCTTCCGAAAAAA-TTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
259 TCCTTCCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
*
2700517 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGC
324 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGC
* *
2700582 CATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGA
389 CATAAAAAT-GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
** * * *
2700647 TCCATGGCTTGCTTATCCCGTCTCTCTGGCCGACACAGTTTTCGCCCAGCTGTCCGCCCGTCCGC
453 TCCA-GGCTTGCGCATCCCGTCTCTCTGGCCG--GC-GTTATCGCCC-GCCGTCCGCCCGTCCGC
* * * * *
2700712 TCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAG
513 TCGATTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAG
** * * *
2700777 GTTG-GGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCG
578 GTTGCGGTAGCAGGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCA
* * *** * *
2700841 CCCCTCTGGCAGGCTGAGCGCCCGTACGCTCAATTCGTGAGTTGACTTAGGCATACGGATTTCAT
643 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
2700906 TGCCAGTCTAAGCTTATGGAGTTCATTCCCAATCTAAGATCGGACCGA-ACCGAGGGTTTTTGTG
708 TCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA-CGAGACCGAGGG---TTGCG
* * * * ** *
2700970 GCCAGCACATGCTGGGCGTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGT
769 G-CAGCACATGCAGGGC-TCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGC
** * * *
2701035 TGGAGCATCGTCAGAGAACCTGATCGATGGCATTGGGGTTACGGCGATC-GGGGGG-C-CGGGG-
832 TGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTACGACGATCGGGGGGGCCGCGGGGT
2701096 G-T-TA
897 GTTGTA
2701100 CGCACATGATGTGCGATGGGTGCTGG-ACTGGCCCTTATATT-GCCCCCTAT-CCTCATCAAACC
1 CGCACATGATGTGCGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
2701162 TCGAGAACTCACACTCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
66 TCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
2701227 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGC
130 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
2701292 TGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCCAAAAAT
195 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
** *
2701357 CCTTCCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
260 CCTTCCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * *
2701422 ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCT
325 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
* * * *
2701487 AGAAAAATGCATTGGCACGCAGAAATATAAAGATGTGCCTAAGCCCACCTACCACCCTATTGATC
390 ATAAAAATGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
2701552 CACGCTTACGCATCCCGTTCTCTCTGGCCGGCG-TAGCGCCCGCCCGCCCGCCC-TCCCGCTC-A
455 CAGGCTTGCGCATCCCG-TCTCTCTGGCCGGCGTTATCGCCCG-CCGTCCGCCCGT-CCGCTCGA
* * * *
2701614 TTCGTCAATTGGCTTAGGCATACGTAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTG
517 TTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTG
* ** * * * ** * *
2701679 CGGTAGCAGGATCGACAGCACGTAAAGGTAGACCCGGTCGCTCCTCGGCTTATGCATCCTACCCG
582 CGGTAGCAGGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCC
* *
2701744 TCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCC
647 TCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
2701809 AGTCTAAG
712 AGTCTAAG
2701817 ATCGGACCGG
Statistics
Matches: 1423, Mismatches: 177, Indels: 55
0.86 0.11 0.03
Matches are distributed among these distances:
898 60 0.04
899 132 0.09
900 1 0.00
901 1 0.00
902 12 0.01
903 269 0.19
904 125 0.09
905 11 0.01
906 273 0.19
907 200 0.14
908 3 0.00
909 149 0.10
910 73 0.05
911 10 0.01
912 6 0.00
913 19 0.01
914 79 0.06
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (902 bp):
CGCACATGATGTGCGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTC
CTTCCTAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCA
TAAAAATGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
AGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTATCGCCCGCCGTCCGCCCGTCCGCTCGATTCG
TCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGT
AGCAGGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTG
GCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACGAGACCGAGGGTTGCGGCAGCACATGCA
GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGCTGGAGCATCACCAG
AGAACCTGACCGACGGCATTGGGGTTACGACGATCGGGGGGGCCGCGGGGTGTTGTA
Found at i:2703670 original size:90 final size:90
Alignment explanation
Indices: 2703517--2703699 Score: 357
Period size: 90 Copynumber: 2.0 Consensus size: 90
2703507 GGGGGTGTGC
*
2703517 GCACATGATGTGCAATGGGTCCTGGTACTTGGCCCTTATACTGGCCTCCTATCCCTCATCAAACC
1 GCACATGATGTGCAATGGGTCCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACC
2703582 TCGAGAACTCACACCCCCTTAAAGA
66 TCGAGAACTCACACCCCCTTAAAGA
2703607 GCACATGATGTGCAATGGGTCCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCAATGGGTCCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACC
2703672 TCGAGAACTCACACCCCCTTAAAGA
66 TCGAGAACTCACACCCCCTTAAAGA
2703697 GCA
1 GCA
2703700 TTTGAGATTT
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 92 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (90 bp):
GCACATGATGTGCAATGGGTCCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGA
Found at i:2705114 original size:26 final size:26
Alignment explanation
Indices: 2705074--2705126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2705064 GTTGACTTAG
2705074 GCATACGGAGATCATACCCAGTCTAA
1 GCATACGGAGATCATACCCAGTCTAA
* **
2705100 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGATCATACCCAGTCTAA
2705126 G
1 G
2705127 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATACCCAGTCTAA
Found at i:2706017 original size:26 final size:26
Alignment explanation
Indices: 2705981--2706033 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2705971 GTTGACTTAG
2705981 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
2706007 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2706033 G
1 G
2706034 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2706872 original size:26 final size:26
Alignment explanation
Indices: 2706834--2706886 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2706824 GTTGACTTAG
* * *
2706834 GCATATGGGGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2706860 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2706886 G
1 G
2706887 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:2707773 original size:26 final size:26
Alignment explanation
Indices: 2707737--2707789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2707727 GTTGACTTAG
* *
2707737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
2707763 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
2707789 G
1 G
2707790 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:2710401 original size:26 final size:26
Alignment explanation
Indices: 2710372--2710424 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2710362 GTTGACTTAG
*
2710372 GCATACGGAGTTTC-TTCCCAGTCTAA
1 GCATACAGAG-TTCATTCCCAGTCTAA
*
2710398 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2710424 G
1 G
2710425 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2711305 original size:26 final size:26
Alignment explanation
Indices: 2711275--2711327 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2711265 GTTGACTTAG
** *
2711275 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2711301 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2711327 G
1 G
2711328 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2712215 original size:26 final size:26
Alignment explanation
Indices: 2712179--2712231 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2712169 GTTGACTTAG
2712179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2712205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2712231 G
1 G
2712232 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2712751 original size:904 final size:899
Alignment explanation
Indices: 2706776--2716192 Score: 10581
Period size: 903 Copynumber: 10.6 Consensus size: 899
2706766 GAGGGTTGTG
* * * *
2706776 GCATCCCGCCACTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * *
2706841 GGGTTCATTCCTAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
** * ** * *
2706906 TACGGCAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCACATTTTTTTTCTTCGGGGCACCATC
131 TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* * * * * **
2706971 GCCAGG-GCATCGCCGGAGAACCTGAACGGCAGCATTGAGGTTCCTACGATCGGGGGGGCCA--G
196 ACC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CAGGG
*
2707033 GGGGTGTGCGCACATGAAGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** * *
2707098 CATCAAACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGT
323 CATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
2707163 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGT
387 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
2707228 GTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGT
452 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGA
* *
2707293 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCATGAA
517 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
2707358 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAT
582 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
2707423 TTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCTACCAC
647 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
2707488 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCG-CGTAGTGCCCGTCCGCTCGCCCG
712 CCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGG-CCGACGTAGTG-CC--CCGCCCGCCCG
* * * * * * * *
2707552 CTCGCTCGTTTCGTCGTTTGGCTTAGTCATGCAGAGTTCATTCCCAGTCTATGATCAGACCAGA-
773 CCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT
** * * * * * *
2707616 CTGAGGGTCATAGTAGTAGG-TTCGGTAGC-TCACAGAGGGGGACC-CAGCCGATCCCCGACTTG
838 C-GAGGGTTGTGGCAGCAGGATT-GGTAGCAT-GCAGAGGGGGACCTGA-CCGATCCCCGGCTTG
2707678 C
899 C
* * * * **
2707679 GCATCCCGCACCGCTGGCCGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * *
2707744 GAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCACTCCCAGTCTAAGATCAGATCGGACCGAGGG
66 GAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * **
2707808 TTGCGGCAGCACATGCTGGGCTCGGGAATGTGCTGGT---GTAACATTT-TTC-T----------
130 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCGGGGCACCA
* * *
2707858 T---C---G---C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACTATCGGGGGGCCGGGG
194 TCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CAGGG
* * *
2707912 GGGGTGTGCGTACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATTCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
2707977 CATCAAACCTCGAGAACTCACACCCCCATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
323 CATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
2708042 AGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCAA
387 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
2708107 GTTTTTAGCTGAAATTTTTTGTGCATGCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
452 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGA
* * * * * *
2708172 GCCAAAAAC-CCTTCGAAAAAATTTTTACAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGA
517 GCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * * * *
2708236 AAAATAGAAAACGTGTCGTCCTGCCATGAAACTTCACGTCAACGCTCAATGGACCATTGTATGAA
581 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
2708301 TTTCCAAGCCAT-AAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCAAAACCCACCTACCA
646 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
2708365 CCATATCGATCTACGGCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGCCCGCCCTCCCG
711 CCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCCGCCCG
* * *
2708430 CCCACTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGAT
773 CCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT
* * * * * * *
2708495 CGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTAC
838 CGAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGC
* * *
2708557 GTATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
2708622 GAGTTCATTCCCAGTCTAAG-ATACGGGAGTTCATTCCCAAGGT-T-AGATCGG-CCA-ACTG-G
66 GAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCC-A-GTCTAAGATCGGACCAGACCGAG
* * * * * *
2708681 GGTTGTGG-TGCACATGCT-GG-TCGAG--T-TGC-CGTG-CGCATTTTTTTTACGTAGGGGCAC
128 GGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-CGTCGGGGCAC
* * * * * *
2708738 CATC-GCGGAGCATCATCCGAGAACCTGA-C-TCGGCATTGGGGTT-CGGTGAATC--GGGTCA-
192 CATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCG-ATCGGGGGGCAG
*
2708796 GGAGGGTGTG-GCA-A-G-TG-G-GAT--G-GCTGGTACTT-GCCCTTATA-TGGCCCCCTATCC
256 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
2708850 TCTAAATC-AA-CTTGAGAA-T-ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCC
321 -CT-CATCAAACCTTGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** * *
2708911 CAGTCAGCCATTAAAGTGTCT-AAATGGGG-CAAATTTTTAAAATTGGTCAC-AAATCTTTGCAC
383 CAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TGGTCACAAAATC-TTGTAC
* *
2708973 ACTTCGAGTTTTTGGCTG-ATTGTTTTT-TGCATGCC-ACAAAAATACAAGCGATCACGTTTACC
445 ACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACC
* * * *
2709035 AAGTTT-G-GCC-AAGCACCTTCAAAAAAAAATGTTT-AAAAATCCTGAACCGTAAAAAGTTTCA
508 AAGTTTGGAGCCAAAACTCCTTC-CAAAAAAAT-TTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
2709096 AAAATCGTGAAAAATA-AAAATCGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
571 AAAATCGTGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
2709160 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATGTGCCTAAA
635 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * **
2709225 ACCACCGACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGTTGACGTAGT-----G
700 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCCG
* * * *
2709285 CCCGCCCG-CCACTCGTCTT-ATCGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATC
765 CCCGCCCGCCCACTCGT-TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
2709348 GGATCGGATCAAGGGTCGTGGCAGCA-GATCGGATAGCACGTA-A-GGGGACCTGACTGATCCCC
829 GGACCAGATCGAGGGTTGTGGCAGCAGGATTGG-TAGCATGCAGAGGGGGACCTGACCGATCCCC
*
2709410 GG-TTGT
893 GGCTTGC
* * *
2709416 GCATCCCGCTCCTCTGGCCGGCTGAGCGCCCGCACGCGCTCATTTTAATGGGTTGACTCTTAGGC
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA--CGCTC-GTTTCATGGGTTGA--CTTAGG-
* * * * *
2709481 CATATCTGAGTTCATTTCCAGTCTAAGCATATGGAG-TC-TTCCCAGCCTAAGATCGCCGACCAG
60 CATA-CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG--GACCAG
** * *
2709544 A-CGA-GGTTG-CCCAAAGCACATGCCTTGGGCT-AGG-ATGTGCTGGT-CCGGTAGTTTTCTTC
122 ACCGAGGGTTGTGGC--AGCACATG-C-TGGGCTCGGGCATGTGCTGGTGCC-GTATTTTTCTTC
* * * * * *
2709603 ATCGGGGCACCATCGCCAGAGCATCGTC-GAGAACCTGACCGACAGCATTGGGGTTCCGGTGATC
182 GTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC
* ** * * * * *
2709667 GAGTAGCCGGGGGGCTGCGCGCACATGATGTCCGATGCGGTGCCGGTACTTGGCCCTTATATTGG
247 GGGGGGCAGGGGGGGTGTGCGCACATGATGTGCGATG-GGTGCTGGTACTTGGCCCTTATATTGG
* * * *
2709732 CCCCCTATCCATCATCAAACC-TCAGAACTCACACTCCTT-AAGAGCAATT--GATTTCT-CAGG
311 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTT-TACAGG
*
2709792 TTTGCTGCCCAGTAGCCATTAAATTGTCTGAAATGGGGTACAC-TTTTTCACAATGGTCACAAAA
375 TTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGG-ACACTTTTTTCA-AATGGTCACAAAA
* * * *
2709856 TCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCAGGCCAACAAAAATACTAGGATCACG
437 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
2709921 TCTACCAAGTTTGGAGCAAAAACTCCTTTCGAAAAAATTTGAAAAAATCCCGAACCCTAAAAAGT
502 TCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
**
2709986 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
567 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
2710051 GACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
632 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * *
2710116 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCTACGTAGT---
697 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCC
* * * *
2710178 --GCCCTCTCGCCCACTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGA
762 CCGCCCGCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * **
2710241 TCAGATCA-AACTGAGGGTTGTGGCAGTAGGATTGATAGCATGCAAAGGGGGA-CTCGGTCGATC
827 TCGGACCAGATC-GAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCT-GACCGATC
*
2710304 CCCGGCTTAC
890 CCCGGCTTGC
* * * * * *
2710314 GTATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
2710379 GAGTTTC-TTCCCAGTCTAAGCATA-TAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGG
66 GAG-TTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
** * * * * * * ** * *
2710442 GTTACGGCGGTACATGCTAGGCTCAGGCATGTGCTGGTGTCATATTTTTCTAGGCCGGGGCAGCA
129 GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
** * **
2710507 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGGTTGAG
194 TCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCAG-G
2710572 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
257 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2710637 TCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAG
322 TCATCAAACCTTGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
2710702 AAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCG
386 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2710767 AGTTTTTAGCTGATTTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGG
451 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* **** ** * * ** *
2710832 GGCCAAAAGGATTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAATTTTTGATAATCGTGA
516 AGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
2710897 AAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACG-GAAGGCTTAAGGGACCATTGTATGAA
581 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
2710961 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
646 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2711026 GCCTATCGATCCACGGCTTGCGCA-TCCTGTCTCTCTAGCTGACGTAGTACCCGCCCGCCCGCCC
711 CCCTATCGATCCACGGCTTGCGCATTCC-GTCTCTCTGGCCGACGTAGT--GC-CCCGCCCGCCC
* * * * * * *
2711090 GCTCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAACATCAGACCGGA
772 GCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
** * * ** * * * *
2711155 -CTGAGGGTTGCAGTAGTAAAATTGGCAGCACGTAGAGAGGGATCC-GACCGATCCCCGGCTTGC
837 TC-GAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGA-CCTGACCGATCCCCGGCTTGC
* * *
2711218 GCATCCCGCCCCTCTGGCC-GATGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * *
2711282 GCGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * * *
2711347 TATGGCAGCACATGCTCGCCTCAGGCATATGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
131 TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* *
2711412 ACCGGAGCATCG-CTGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCTA-GGG
196 ACCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGC-AGGGG
*
2711475 TGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* ** * * *
2711540 ATCAAATCGCGAGAACTGACACTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTA
324 ATCAAACCTTGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
2711605 GCCATTAAAGTGTCTGAAATGTGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
2711670 TTTTTGGCTGAATTGTGTTTGTGCATGACAATAAAAATACAAGGATCACGTCTACCATGTTTGGG
453 TTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGA
* * * *
2711735 GCCAAAAATCCTT-CAGAAAAAAATTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGA
517 GCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
2711799 AAAATATAAAACGAGTCGTCTTGCCATCAAACTTCACGTGACGGCTTAAAGGACCATTGTATGAA
581 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
2711864 TTTACAAGCCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCA
646 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
2711929 CCCTATCGATCCACGGCTTGCACATTCCGTTTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCCCG
711 CCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTG--C-CCCGCCCGCCCG
* * * * *
2711994 CCCGCTCGTTTCGTCGATTGGCTTAGGCATAAGGAGTTCATTCCCAATCTAAGATCGGATCAAAT
773 CCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT
* ** *
2712059 CGAGGGTTGTGTCAGCAAAATCGGTAGCATGCA-AGGGGGACCTGACCGATCCCCGGCTTGC
838 CGAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGC
* * * * * * *
2712120 GTATCCCGCCTCTCTGGTCGGCTGAGCGCCTGCACACTCATTTTAATGGGTTGACTTAGGCATAC
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATAC
*
2712185 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GG
65 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
2712249 TTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCAT
130 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
* *
2712314 CACCGGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTACGGCGATCGGGGGGTCAAGGG
195 CACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-C-AGGG
* *
2712379 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTGTCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
2712444 CATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
323 CATCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
2712509 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATGTTGTACACTTCGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
2712574 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCAAGTCTTCCAAGTTTGGA
453 TTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGA
** ** *
2712639 GCCAAAACTTTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAGATCGTGAA
517 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
*
2712704 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATT
582 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
2712769 TTACAAGCCATAAAAATGGCATTGGCAC-CTAGAAATATGAAGATGTGCCGAAACCCACCTACCA
647 TTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
2712833 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCCGGTCGGCGTAGTGCCCACCTGCCCGTCCA
711 CCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTG-CC-CC-GCCCGCCCG
** * * * *
2712898 CCTGCTCGTTTCATC-AGTTGGCTTAGTCATACGGAGGTCATTCCCAGTCTAAGATCAGACCAGA
773 CCCACTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * * ** *
2712962 -CTGAAGGTTGCGGCAGTAGGATCGATAGCACACAGAGGGGGATCC-GATCGATCCCCGGCTTGC
837 TC-GAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGA-CCTGACCGATCCCCGGCTTGC
* * *
2713025 GCATCCCACCCTTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----TA--
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
2713082 G-G--------CA---T-A-C--A--AAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * ** * *
2713129 TGCGGTAGCACATGCACGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC-GGG---C--C
131 TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* * * * *
2713188 A-C----CATCGCCGGAGAACCTGACCGGCGGCGTTGGGGTTTCGGTGATCGGGGGGGC-CGGGG
196 ACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCAGGGGG
*
2713247 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
2713312 TCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCCAGTAG
325 TCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
2713377 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGATT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
2713442 TTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGA
454 TTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GA
* * *
2713507 -CAAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
517 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* * *
2713571 AAGTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATTAAT
582 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
2713636 TCACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCAC
647 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * * *
2713701 TCGATCGATGCACGGCTTG-GCATCCCGTCTCTCTGGTCGATGTAGTG-CCCGGCCGCCTGCCCA
712 CCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCA
* * * *
2713764 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGGCC-GAACTGA
777 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GA
* * * * * *
2713828 GGGTTATGGCAGCATGATCGGTAGCATGCAGATGGGGACCCGACTGATCCCCGGCTTGC
841 GGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGC
* * * * * ** * * * *
2713887 GCATCCCGCCTCTTTGGCTGGCCGAGCGCCGGTGCGTTCTTTTCGTGGTTTGACTTAGGCATACA
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-
* * * * * *
2713952 GAAG-TCATTCCCAGTCTAAGCATACGAAGTTCATTCCAAGTATATGATCAGACCAAACCGAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * * *
2714016 TTGCGGCAGCACATGCTGGGCTTGGTCTTGTGCTGGTGCCGTATTTTTCATCGTCGAGGCACCAT
130 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT
** * * *
2714081 CGTCGGAGCATTGCCGGAGAACCTGA----C--CA-----------GCGATC-GGGGGC--CGGG
195 CACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCAGGGGG
*
2714126 GG-GTGCTC-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
2714189 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
325 TCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
2714254 CCATTAAAGTGTCTAAAATGGGGACACTTTATTCAAATGGCCACAAAATCTTGTACACTTCGAAT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
2714319 TTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTCGAGG
454 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGA-G
* * * *
2714383 CCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
518 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
2714448 AATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATT
583 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
2714513 TACAAACCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCAACTACCACT
648 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * **
2714578 CTATCGATCCACGGCTTGCGCA-TCTCGCCTCTCTGGCCGGCATATTG-CCCGCCCGTTCG--C-
713 CTATCGATCCACGGCTTGCGCATTC-CGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCA
* * * *
2714638 TTCG--TCG--GA-TGGCTTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGATCGAG
777 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAG
** * * * *
2714698 GGTTGCAGCAGCAGGATTGGTAGCATGCAGAGGTGGACCTGGCCGATCCCCAGCTTAC
842 GGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGC
* * *
2714756 GCCTCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* ** *
2714821 GAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCTGAGTCTAAGATCAGACCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * **
2714886 TGTGGCAGCCCATACTGGGTTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATC
131 TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
** * * * * * *
2714951 GTCGGAGCATGGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGG
196 ACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCAGGGGG
* * * * *
2715016 GGTGGGCACACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTTA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
2715081 TCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGC
325 TCAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
**
2715146 CATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGT
390 CATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
2715211 TTTTAGCAGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGC
454 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGC
** *** ** ** *
2715276 CAAAACTCCTTCTGAAAAAATTTTAAAAAATATTGAACCACAAAAAGTTTTGAAAATCATGAAAA
519 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
2715341 ATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
584 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
2715406 ACAAGACATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
649 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
2715471 TATCGATCCACGGCTTGTGCATCCCG-C-CTCT------C----T-----G---G-CCG----CT
714 TATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCACT
* * * *
2715511 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGA-CTGGACCGGATC-ACG
779 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGATCGA-G
* ** * * * *
2715574 AGTTGCAGTAGCAGGATTGGTAGCAT--AGAGGGGGATCC-GATCGATCTCCGGCTTAC
842 GGTTGTGGCAGCAGGATTGGTAGCATGCAGAGGGGGA-CCTGACCGATCCCCGGCTTGC
* * * *
2715630 GCATCCCACCCCTCTAGCCGGCTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGCACACG
1 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * ** * * * *
2715695 GAGTTTATTCCCAGTCTAAGCATACAAAGTTCATTCTGACTCTAAGATCAGACCGGACCAAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * ** * *
2715760 TGTGGCAGCCCATTCTGGGTTCGGGTAGGTGCTGAAGCCGTATTTTTCTTCATCGGGGCACAATC
131 TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
* * * *
2715825 ACCGGAGCATCGTCAGAGAATCTGA-CGGCGGCATTGGGGTTCCGCCGATCGGGGTGGCCGGGGG
196 ACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GG-CAGGGG
* *
2715889 GGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
2715954 ATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAATTGAGATTTTACAGATTTGCTGCCAGTA
324 ATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
2716019 GCCATTAAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
2716084 TTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCAG
453 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAG
* * * *
2716149 CCAAAACT-CTT--GAAAAAATTTCAAAAAATGCCGAATCGTAAAAA
518 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
2716193 TGTCGGATGG
Statistics
Matches: 7302, Mismatches: 935, Indels: 586
0.83 0.11 0.07
Matches are distributed among these distances:
859 33 0.00
860 19 0.00
861 15 0.00
862 231 0.03
863 15 0.00
864 18 0.00
865 6 0.00
866 135 0.02
867 347 0.05
868 69 0.01
869 299 0.04
870 115 0.02
871 137 0.02
872 60 0.01
873 120 0.02
874 444 0.06
875 118 0.02
876 340 0.05
877 255 0.03
878 370 0.05
879 424 0.06
880 27 0.00
881 4 0.00
882 11 0.00
883 5 0.00
884 7 0.00
885 2 0.00
886 19 0.00
887 4 0.00
888 89 0.01
889 36 0.00
890 57 0.01
891 160 0.02
892 494 0.07
893 83 0.01
894 266 0.04
895 135 0.02
896 143 0.02
897 196 0.03
898 69 0.01
899 34 0.00
900 3 0.00
901 206 0.03
902 179 0.02
903 693 0.09
904 666 0.09
905 141 0.02
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC
ACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCAGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCA
AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCACTCG
TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTT
GTGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGC
Found at i:2715263 original size:892 final size:892
Alignment explanation
Indices: 2714134--2716192 Score: 2718
Period size: 874 Copynumber: 2.3 Consensus size: 892
2714124 GGGGGTGCTC
*
2714134 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
2714199 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
2714264 GTCTAAAATGGGGACACTTTATTCAAATGGCCACAAAATCTTGTACACTTCGAATTTTTAGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
2714329 ATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGAGGCCAAAAATCCT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAAATCC-
2714394 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
259 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
2714459 AGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAACCATA
324 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
2714524 AAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCAACTACCACTCTATCGATCCA
389 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
2714589 CGGCTTGCGCATCTCGCCTCTCTGGCCGGCATATTGCCCGCCCG-TTCGCTTCGTCGGATGGCTT
454 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGTTTCGTCGGTTGGCTT
* * *
2714653 AAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCAGCAGCAGGATTG
519 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCTGAGGGTTGCGGCAGCAGGATTG
* * * * *
2714717 GTAGCATGCAGAGGTGGACCTGGCCGATCCCCAGCTTACGCCTCCCGCCCCTCTGGCCGGCTGAG
584 GTAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
2714782 CACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
649 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* ** * * * *
2714847 AAGTTCATTCTGAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCCCATACTGGGTTCGGGC
714 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
2714912 ATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATGGCCGGAGAACCTGAC
779 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * * *
2714977 CGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGTGGGCACA
844 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCA
* * *
2715026 CATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTTATCAAACCTCG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
2715091 AGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
** *
2715155 GTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCAG
131 GTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
2715220 AATTTTTTTGTGCATGCCAATAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCC
195 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCC
*** ** **
2715285 TTCTGAAAAAATTTTAAAAAATATTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
259 TTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
2715350 GAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACAT
323 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
2715415 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
388 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
2715480 ACGGCTTGTGCATCCCG-C-CTCT------C----TG---G-CCG-CTCGTTTCGTCGGTTGGCT
453 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGTTTCGTCGGTTGGCT
* * * * * * *
2715528 TAGGCATACAGAGTTCATTCCAAGTCTAAGA-CTGGACCGGATC--ACGAGTTGCAGTAGCAGGA
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGATCTGA-GGGTTGCGGCAGCAGGA
* * * * *
2715590 TTGGTAGCAT--AGAGGGGGATCC-GATCGATCTCCGGCTTACGCATCCCACCCCTCTAGCCGGC
581 TTGGTAGCATGCAGAGGGGGA-CCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
2715652 TGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGCACACGGAGTTTATTCCCAGTCTAAGCA
645 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * * * * * *
2715717 TACAAAGTTCATTCTGACTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCCCATTCTGGGTTC
710 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * ** * ** * * * * *
2715782 GGGTAGGTGCTGAAGCCGTATTTTTCTTCATCGGGGCACAATCACCGGAGCATCGTCAGAGAATC
775 GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
2715847 TGA-CGGCGGCATTGGGGTTCCGCCGATCGGGGTGGCCGGGGGGGGTGTGTGCA
840 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGGTGTGCGCA
* *
2715900 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
1 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
2715965 AGAACTCACACCCCCTTAAAAAGCAATTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGT
66 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
2716030 ATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGA
131 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
2716095 ATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCCAAAACT-CT
196 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAAATCCT
* * *
2716159 T-GAAAAAATTTCAAAAAATGCCGAATCGTAAAAA
260 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
2716193 TGTCGGATGG
Statistics
Matches: 1047, Mismatches: 111, Indels: 39
0.87 0.09 0.03
Matches are distributed among these distances:
871 26 0.02
873 34 0.03
874 409 0.39
875 59 0.06
876 79 0.08
877 1 0.00
880 2 0.00
884 1 0.00
890 4 0.00
891 61 0.06
892 370 0.35
893 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (892 bp):
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTT
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCTGAGGGTTGCGGCAGCAGGATTGGT
AGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCA
Found at i:2716397 original size:26 final size:26
Alignment explanation
Indices: 2716367--2716419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2716357 GTTGACTTAG
* *
2716367 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
2716393 GCATACGGAGCTCGTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
2716419 G
1 G
2716420 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:2717010 original size:26 final size:26
Alignment explanation
Indices: 2716980--2717031 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2716970 GTTGACTTAG
2716980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2717006 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2717032 TATAGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2719180 original size:862 final size:864
Alignment explanation
Indices: 2716628--2721316 Score: 4961
Period size: 862 Copynumber: 5.3 Consensus size: 864
2716618 GAAGTTTGGG
2716628 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2716692 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * *
2716757 TATCCCGTCTCTCTGGCCGACGTAGTGC-CTGCCCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTA
131 CATCCCGTCTCTCTGGCCGACGTAGTGCGC-GCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTA
* * * * *
2716820 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTACAGCAGTAGGATCGG
195 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTACGGCAGTAGGATCGA
*** * * ** * *
2716884 CAGCATGTAGAAGGGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGC
259 CAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CC-CCCCTCTGGCCGGCTGAGC
*
2716949 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
322 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G
* *
2717014 AGTTCATTCCTAGTCTAATATAGGATCGGACCGGCAGAGGGTTACGGTAGCACATGCTGGGCTCT
386 -G---------AGTC--------GA---GA-C--C-GAGGGTTGCGGCAGCACATGCTGGGCTC-
* * *
2717079 G-GCATGTGCTGGTGCTGTATTTCTCTTCATCGAGGCAGCATCGTCGGAGCATCGTCGGAGAACC
425 GAGCATGTGCTGGTGCTGTATTTTTCTTCGTCG-GG--GCA-C--C--ATCA-C--CGGAGAACC
* *** *
2717143 TGGCCGACGGCATTGGGG-TCCGGTAATC-GAGGGGTCCGGAGGGGGTGTGCGCACATGGATG-G
479 TGACCGACGGCATTGGGGTTCCGACGATCTG-GGGGGCC-G-GGGGGTGTGCGCACAT-GATGTG
* * * * *
2717205 CAAT-GGTACCGGTACTTGGCCCTTATATTGGCCCCATATCCCATCATCAAACCTAGAGAACTCA
540 CAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCA
* * *
2717269 CACCGCCTTAAA-AGCATTTGAGATTTTACAGCTTTGCTGCCAGTAG-CATT-AAGTGTCTAAAA
604 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2717331 TGGGGACACTTTTTTCAAAATGGTCA-AAAATCTTGTACACTTCGAGGTTTTTTAGCTGGATGGT
669 TGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGA-G-TTTTTAGCTGAAT-TT
* * * **
2717395 TTTTGTTGGCATGCCAACAAAAAATACAAGGCCATCACATCTACAAAGTTTTGGGCCAAAACTAG
730 TTTTG-T-GCATGCCAA-AAAAAATACAAGG--ATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** * *
2717460 TGGCGAAAAAA-TTTAAAAAATCTCGAACCCCTAAAAAGTTTC-AAAATCGTGAAAAAATAGAAA
790 TTCCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTG-AAAAATAGAAA
* *
2717523 ATGAGTCGTCTT
853 ACGAGTCATCTT
* * ** * *
2717535 GTCATAAAACTTCACGTGAAGGCTTAAGGGAACCATGTGTATGAATTTACAAGAAACAAAAATGC
1 GCCATGAAACTTCACGTGAAGGCTTAAGGG-ACCAT-TGTATGAATTTACAAGCCATAAAAATGG
* *
2717600 CA-TGGCACGTAGAAATATGAACG-TG-GCCT-AACCCACCTACCACCCTATCGATCCCACGGCT
64 CATTGGCACATAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGAT-CCACAGCT
* * *
2717661 TGCGCTATCTCGTCTCTCATTTGGCCG-GGTAGTGCCCTGCCCGCCCGCCCACCCGCCTCG-TTC
127 TGCGC-ATCCCGTCTCTC---TGGCCGACGTAGTG--C-G--CGCCCGCCCGCCCG-CTCGTTTC
* * * ** *
2717724 ATCGGTTGGGCTTAGGCATACGGAG-TCA-TCCCAGTCTGAGATTAGGACCAGACTCCGAAGG-T
182 ATCAGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTGGACT--GAGGGTT
* * * *** * *
2717786 ACAGCAGCAGGATCGACAACATGTAGAGGGGCA-CCGATCGATCCCCAGGCTTGCGCATCCCTCC
243 ACGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCC-GGCTTGCGCAT-CC-CC
* * * * **
2717850 CCTATGGCCGGCTGAAGCCGCCCGGACGCTCGTTTCATGTGTCAACTTAGGCATAC-GAGTTCAT
305 CCTCTGGCCGGCTG-AG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
2717914 TCCCAGTCTAAGCATGCAGAGTTCATTCCCAATCTAAAATTGGACCAGACCGAGGGTTGCGGCAG
368 TCCCAGTCTAAGCATAC-G-G---------AGTC--------G---AGACCGAGGGTTGCGGCAG
* * * *
2717979 CACATGCTGGGCTTGGGCACGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
411 CACATGCTGGGCTCGAGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCA---TC--A-C
* * *
2718044 ATCGCCGAGAACCTGACCGACGACATTAGGGTTCCAACGATC-GGGTGGGCCGGGGGGTGGGTGT
470 --CG--GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCTGGG-GGGCC---GGG-GGGTGT
* * *
2718108 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAA
526 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAA
*
2718173 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
591 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * * *
2718238 AAAGTGTCCGGAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
656 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
2718303 GCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAA
721 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
2718368 ATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
786 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
2718433 AAATGAGTCGTCCT
851 AAACGAGTCATCTT
* *
2718447 GCCATGAAACTTCACGTGAATGCTCAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2718511 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGGCTTACG
66 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * * * **
2718576 CATCTCGTCTCTCTGGGCGACGTAGTGCGCGCCTGCCCGCCTGCTCATTTGCGTTGGTTGGCTTA
131 CATCCCGTCTCTCTGGCCGACGTAGTGCGCGCCCGCCCGCCCGCTCGTTT-CATCAGTTGGCTTA
* * * **
2718641 GGCATAAGGAGTTCATTCCCAATCTAAGATCAAACTGGACTGAGGGTTACGGGTGTAGGATCGAC
195 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGCAGTAGGATCGAC
* * * *
2718706 AGCACGCAGAGGGAGACCCGGTCGATCCGCGGCTTGCGAATCCAACCCCTCTGGCCGGCTGAGCG
260 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC--CCCCTCTGGCCGGCTGAGCG
2718771 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGA
323 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
2718834 -TCGA-ACCGAGGGTTGCGGCAGCACATGCTGGACTCGAGCATGTGCTGGTGCTGTATTTTTCTT
388 GTCGAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGTATTTTTCTT
* * * * *
2718897 TGCCGGGGCACCATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCC-AGCGTTCTGGGGGGCC
453 CGTCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCTGGGGGGCC
*
2718961 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCCTATATTGGCCCCCTATCC
517 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCC
*
2719026 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA
582 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
**
2719091 GTAGCCATTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
647 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
2719156 GAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
712 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
** * **
2719221 GGGCCAAAACTATTTCCAAAAAAATTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATCGTG
777 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
2719286 AAAAATAGAAAACGAGTCATCTT
842 AAAAATAGAAAACGAGTCATCTT
**
2719309 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTT
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2719374 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGCG
66 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* *
2719439 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCACCCGCCCGCTCGTTTCATCAGTTGGC
131 CATCCCGTCTCTCTGGCCGACGTAGTG--CG--CGCCCGCCCGCCCGCTCGTTTCATCAGTTGGC
* ** * *
2719504 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATC
192 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGCAGTAGGATC
* * * *
2719569 GGCAGCACACAGAGGGGGACTCGGTCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGTTCA
257 GACAGCACACAGAGGGGGACCCGGT-CGATCCCCGGCTTGCGCATCCC-CCCTCTGGCCGGCTGA
* * * * * *
2719634 GCGCCTGCACGCTTGTTTCATTGGTTGACTTAGGCAAACGGAGTTCATTTCCAGTCTAAGCATAC
320 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
**
2719699 AGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGAAAGCACATGCTGGGCTCGAG
385 -G-G---------AGTC---G---AGA-C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
* * *
2719764 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCATGATCGTCGGAGCATCATCGAAGAACCTGA
428 CATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGC---A----C----CATCACCGGAGAACCTGA
* *** * * * * *
2719829 TCGGTAGTATTGGAGTACCGACGAT-GGGAGGGGTCGAGGGGGTGTGCG--CATGATGTGCAATG
482 CCGACGGCATTGGGGTTCCGACGATCTGG-GGGGCCG-GGGGGTGTGCGCACATGATGTGCAATG
** *
2719891 GGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCACACCCA
545 GGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
2719956 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAATGGGGA
610 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
2720021 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCGGTATTTTTTTATGCAT
675 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
2720086 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
740 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-
* **
2720151 AAAAAAATCCCGAAAGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
804 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * *
2720212 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
2720277 TTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCG
66 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * *
2720341 CATCTCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
131 CATCCCGTCTCTCTGGCCGACGTAGT----G--CG--CGCCCGCCCGCCCGCTCGTTTCATCAGT
* *
2720406 TGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCGGCAGTA
188 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTACGGCAGTA
** * * * ***
2720470 GGATC-AGCAGCACACAGAGGGGGACCTAG-CTAATCCCCAGCTTACGCATGTTGTCCCTCTGGC
252 GGATCGA-CAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCA--TCCCCCCTCTGGC
* * *
2720533 CGGCTGAGCGCCCGCACACTCGTTTTGTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
313 CGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * *
2720598 AAGCATACGGAGTTC-ATTCCCAGTCTAAGAGTTTTGTGGTAGCACATGCTAGGCTTGGGCATGT
377 AAGCATACGGAG-TCGA-GACC-G----AG-G-GTTGCGGCAGCACATGCTGGGCTCGAGCATGT
* *
2720662 TCTGGTGCCAG-ATTTTTCTTCGTCGGGGCACCATCACCGGGAGAACCTGACCGACGGCATTGGG
433 GCTGGTG-CTGTATTTTTCTTCGTCGGGGCACCATCACC-GGAGAACCTGACCGACGGCATTGGG
* * * **
2720726 ATTCCGACGA-CTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCGGG
496 GTTCCGACGATCT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
* * * *
2720790 CTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTG
560 CCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
2720855 AGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACCCTTTTTTCAAATG
625 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
2720920 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACA
690 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
2720984 GGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCATCC-AAAAATTTTTTAAAAATCCCGAACC
755 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * *
2721048 GTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTT
820 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* ** * *
2721093 GCCATGAAAGTTCACGTGAAGGCTTGAA-GGACCATTGTATGAATTTACAAGTGAGAAAAATAGC
1 GCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2721157 ATTGGCACATAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACAACTTGC
65 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* ** *
2721222 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTA
130 GCATCCCGTCTCTCTGGCCGACGTAGTGCGCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTA
*
2721287 GGCATACGGAGTTCATTCCCACTCTAAGAT
195 GGCATACGGAGTTCATTCCCAGTCTAAGAT
2721317 TGGACCAGAC
Statistics
Matches: 3266, Mismatches: 377, Indels: 311
0.83 0.10 0.08
Matches are distributed among these distances:
862 369 0.11
863 95 0.03
865 4 0.00
866 186 0.06
867 40 0.01
868 3 0.00
869 1 0.00
870 2 0.00
871 1 0.00
873 2 0.00
874 59 0.02
876 66 0.02
877 1 0.00
878 1 0.00
879 1 0.00
880 3 0.00
881 156 0.05
882 61 0.02
883 94 0.03
884 180 0.06
886 3 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 3 0.00
891 2 0.00
892 61 0.02
893 49 0.02
894 2 0.00
895 1 0.00
896 2 0.00
897 2 0.00
898 1 0.00
899 2 0.00
900 1 0.00
901 35 0.01
902 321 0.10
903 284 0.09
904 39 0.01
905 30 0.01
906 140 0.04
907 99 0.03
908 27 0.01
909 59 0.02
910 59 0.02
911 28 0.01
912 128 0.04
913 28 0.01
914 40 0.01
915 71 0.02
916 32 0.01
917 86 0.03
918 157 0.05
919 67 0.02
920 75 0.02
922 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCGCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGCAGTAGGATCGACA
GCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTC
GAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGTATTTTTCTTCGT
CGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCATCTT
Found at i:2720610 original size:26 final size:26
Alignment explanation
Indices: 2720574--2720626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2720564 GTTGACTTAG
2720574 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2720600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2720626 G
1 G
2720627 AGTTTTGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2722585 original size:117 final size:115
Alignment explanation
Indices: 2722376--2722827 Score: 642
Period size: 117 Copynumber: 3.9 Consensus size: 115
2722366 TCTTGTGTAG
* * *
2722376 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAA-TTTATTTTTAAGAAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTTATTTTCAAGGAAAAT
2722439 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
66 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
2722489 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTT-ATTTTCAAGGAAA
2722554 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* * *
2722606 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTA-TTTCAAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTTATTTTC-AAGGAAA
* *
2722670 ATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTGAAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTGGAAATTTATTTTTAA
* * * * *
2722728 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAATTTTGATTTTCAAGGAAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTT-ATTTTCAAGGAAAA
*
2722793 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
65 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
2722828 TTGAACTTTT
Statistics
Matches: 306, Mismatches: 18, Indels: 27
0.87 0.05 0.08
Matches are distributed among these distances:
113 34 0.11
114 6 0.02
115 11 0.04
116 42 0.14
117 111 0.36
121 11 0.04
122 85 0.28
123 6 0.02
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTTATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:2722647 original size:59 final size:57
Alignment explanation
Indices: 2722376--2722827 Score: 622
Period size: 59 Copynumber: 7.7 Consensus size: 57
2722366 TCTTGTGTAG
2722376 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
*
2722432 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* *
2722489 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAA
2722549 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* **
2722606 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATA--TTTTTTGGAAATTTATTTTTAA
* *
2722665 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTGGAAATTTATTTTTAA
* * * *
2722728 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAA-TTT-ATTTTTAA
* *
2722787 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
2722828 TTGAACTTTT
Statistics
Matches: 360, Mismatches: 20, Indels: 29
0.88 0.05 0.07
Matches are distributed among these distances:
56 43 0.12
57 97 0.27
58 17 0.05
59 110 0.31
60 41 0.11
63 48 0.13
64 3 0.01
65 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:2722695 original size:31 final size:31
Alignment explanation
Indices: 2722604--2722695 Score: 77
Period size: 31 Copynumber: 3.1 Consensus size: 31
2722594 ATTTATTTTT
2722604 AAGGAAAATTGATACTTTCAACTTTTCCTCA
1 AAGGAAAATTGATACTTTCAACTTTTCCTCA
* ** * * *
2722635 AA--AATATT--TTTTTTGAAAATTTAT-TTCA
1 AAGGAAAATTGATACTTT-CAACTTT-TCCTCA
2722663 AAGGAAAATTGATACTTTCAACTTTTCCTCA
1 AAGGAAAATTGATACTTTCAACTTTTCCTCA
2722694 AA
1 AA
2722696 AATCCCTTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 14
0.62 0.18 0.21
Matches are distributed among these distances:
27 4 0.10
28 10 0.24
29 6 0.14
30 6 0.14
31 12 0.29
32 4 0.10
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (31 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTCA
Found at i:2722748 original size:122 final size:122
Alignment explanation
Indices: 2722584--2722820 Score: 365
Period size: 122 Copynumber: 1.9 Consensus size: 122
2722574 CCTAAAAATA
* *
2722584 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCT-AAAAATA--TTTTT
* *
2722648 TGAAAA-TTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTT
63 CGAAAATTTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTT
2722706 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCGA
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCGA
*
2722771 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
2722821 ATTTTTTTTG
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
120 10 0.09
121 3 0.03
122 86 0.81
123 7 0.07
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (122 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCGA
AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTT
Found at i:2722885 original size:16 final size:15
Alignment explanation
Indices: 2722865--2722927 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
2722855 AATAGAATAA
2722865 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
2722880 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
2722896 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
2722912 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
2722928 ATAAGGTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:2722938 original size:27 final size:28
Alignment explanation
Indices: 2722891--2722944 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
2722881 GAAAATAAAT
2722891 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
* *
2722918 AAAAATAAAAATAAGGTAAAGATAAAA
1 AAAAATAAAAATAAAGAAAAGATAAAA
2722945 AATATTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:2722943 original size:6 final size:6
Alignment explanation
Indices: 2722860--2722931 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
2722850 AAGAAAATAG
* *
2722860 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
2722906 GAAAAGTAA AACAAA AATAAA AATAA
1 -AATA--AA AATAAA AATAAA AATAA
2722932 GGTAAAGATA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
4 4 0.08
5 3 0.06
6 36 0.68
7 5 0.09
8 3 0.06
9 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:2722974 original size:4 final size:4
Alignment explanation
Indices: 2722967--2723016 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
2722957 AACCTAATCT
* *
2722967 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
2723015 AA
1 AA
2723017 AAAAAACCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:2722997 original size:12 final size:12
Alignment explanation
Indices: 2722868--2723019 Score: 59
Period size: 12 Copynumber: 12.5 Consensus size: 12
2722858 AGAATAATAA
2722868 AAAAAATAAAAGT
1 AAAAAATAAAA-T
*
2722881 -GAAAAT-AAAT
1 AAAAAATAAAAT
2722891 -AAAAATAAAAAT
1 AAAAAAT-AAAAT
2722903 AAAGAAAAGTAAAA-
1 -AA-AAAA-TAAAAT
*
2722917 CAAAAATAAAA-
1 AAAAAATAAAAT
* **
2722928 ATAAGGTAAAGAT
1 AAAAAATAAA-AT
2722941 AAAAAATATTAAAT
1 AAAAAATA--AAAT
** **
2722955 AAAACCTAATCT
1 AAAAAATAAAAT
*
2722967 AATAAATATAAA-
1 AAAAAATA-AAAT
*
2722979 AACAAATAAAAT
1 AAAAAATAAAAT
2722991 AAAAAAT-AAAT
1 AAAAAATAAAAT
2723002 AAACAAAT-AAAT
1 AAA-AAATAAAAT
2723014 AAAAAA
1 AAAAAA
2723020 AAACCTGGAG
Statistics
Matches: 105, Mismatches: 21, Indels: 28
0.68 0.14 0.18
Matches are distributed among these distances:
10 6 0.06
11 27 0.26
12 45 0.43
13 7 0.07
14 9 0.09
15 10 0.10
16 1 0.01
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.18
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:2723002 original size:28 final size:27
Alignment explanation
Indices: 2722967--2723022 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
2722957 AACCTAATCT
2722967 AATAAATATAA-AAACAAATAAAATAAAA
1 AATAAATA-AACAAACAAATAAAA-AAAA
*
2722995 AATAAATAAACAAATAAATAAAAAAAA
1 AATAAATAAACAAACAAATAAAAAAAA
2723022 A
1 A
2723023 CCTGGAGCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 7 0.27
28 19 0.73
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (27 bp):
AATAAATAAACAAACAAATAAAAAAAA
Found at i:2723020 original size:24 final size:24
Alignment explanation
Indices: 2722970--2723019 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
2722960 CTAATCTAAT
2722970 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAATAAAATAAA
2722994 AAATA-AATAAACAAAT-AAATAAA
1 AAATATAA-AAACAAATAAAATAAA
2723017 AAA
1 AAA
2723020 AAACCTGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (24 bp):
AAATATAAAAACAAATAAAATAAA
Found at i:2723915 original size:21 final size:20
Alignment explanation
Indices: 2723874--2723915 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
2723864 ATAATTAGAG
* *
2723874 AAGATAATAAAAAATATTAT
1 AAGATAAAAAAAAATAATAT
2723894 AAGATAAAAAAATAATAATAT
1 AAGATAAAAAAA-AATAATAT
2723915 A
1 A
2723916 TAAATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (20 bp):
AAGATAAAAAAAAATAATAT
Done.