Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 19 of 129
Found at i:2723955 original size:12 final size:12
Alignment explanation
Indices: 2723938--2723972 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
2723928 TAGGATATAC
2723938 ATAAAATATAAA
1 ATAAAATATAAA
2723950 ATAAAATA-AAA
1 ATAAAATATAAA
2723961 ATAAAA-ATAAA
1 ATAAAATATAAA
2723972 A
1 A
2723973 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:2723963 original size:6 final size:6
Alignment explanation
Indices: 2723940--2723974 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
2723930 GGATATACAT
2723940 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
2723975 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:2724147 original size:9 final size:9
Alignment explanation
Indices: 2724135--2724165 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
2724125 AACATTTTCA
2724135 TTTTTTTTG
1 TTTTTTTTG
*
2724144 TTTTTTTTT
1 TTTTTTTTG
2724153 TTTTTTTTG
1 TTTTTTTTG
2724162 TTTT
1 TTTT
2724166 ACCAAAGCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2724368 original size:1 final size:1
Alignment explanation
Indices: 2724362--2724398 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
2724352 ATAGAGGTAA
* *
2724362 TTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2724399 AAAAAATGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (1 bp):
T
Found at i:2724377 original size:10 final size:10
Alignment explanation
Indices: 2724362--2724398 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
2724352 ATAGAGGTAA
2724362 TTTTTTTTTG
1 TTTTTTTTTG
2724372 TTTTTTTTTG
1 TTTTTTTTTG
2724382 TTTTTTTTT-
1 TTTTTTTTTG
2724391 TTTTTTTT
1 TTTTTTTT
2724399 AAAAAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:2724387 original size:19 final size:18
Alignment explanation
Indices: 2724363--2724398 Score: 63
Period size: 18 Copynumber: 1.9 Consensus size: 18
2724353 TAGAGGTAAT
2724363 TTTTTTTTGTTTTTTTTTG
1 TTTTTTTT-TTTTTTTTTG
2724382 TTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTT
2724399 AAAAAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTTTG
Found at i:2724449 original size:116 final size:114
Alignment explanation
Indices: 2724135--2724505 Score: 478
Period size: 116 Copynumber: 3.2 Consensus size: 114
2724125 AACATTTTCA
** * * * * *
2724135 TTTTTTTTGTTTTTTTTTTTTTTTTT-GTTTTACCAAAGCTCCTTTAAACAGAGGTTCAACGACT
1 TTTTTTTTGTTTTTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACT
*
2724199 TTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTTCATTTTCT
66 TTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAA---TTTTT--TTTTGT
2724253 TACTTTTTTTGTTTCTTTTTGCTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCA
1 T--TTTTTTTG-TT-TTTTT--TTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCA
*
2724318 ATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGTAATTTTTTTTTGT
60 ATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAATTTTTTTTTGT
* *
2724373 TTTTTTTTGTTTTTTTTTTTTTTTTTAAAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGA
1 TTTTTTTTGTTTTTTTTTTTTTTTTT--AAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGA
* * *
2724438 CTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGCAA--CTTTTTTGT
64 CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAATTTTTTTTTGT
2724487 TTTTTTTTGTTTTTTTTTT
1 TTTTTTTTGTTTTTTTTTT
2724506 AAAAGCTCCT
Statistics
Matches: 229, Mismatches: 15, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
114 37 0.16
116 77 0.34
117 2 0.01
118 9 0.04
120 14 0.06
121 2 0.01
122 10 0.04
124 10 0.04
125 68 0.30
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.48
Consensus pattern (114 bp):
TTTTTTTTGTTTTTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACT
TTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAATTTTTTTTTGT
Found at i:2724505 original size:11 final size:10
Alignment explanation
Indices: 2724479--2724504 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2724469 TAGAGGCAAC
2724479 TTTTTTGTTT
1 TTTTTTGTTT
2724489 TTTTTTGTTT
1 TTTTTTGTTT
2724499 TTTTTT
1 TTTTTT
2724505 TAAAAGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:2724567 original size:41 final size:41
Alignment explanation
Indices: 2724510--2724739 Score: 379
Period size: 42 Copynumber: 5.5 Consensus size: 41
2724500 TTTTTTAAAA
* *
2724510 GCTCCTCTAAACAGAGGCTCGACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
2724551 GCTCCTCTAAACAGAGGCACCACGAATTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
*
2724593 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
2724634 GCTCCTCTAAACAGAGGCACGACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
2724676 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATT
2724718 GCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCA
2724740 AATTGCTCCT
Statistics
Matches: 176, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
41 66 0.38
42 110 0.62
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:2724599 original size:42 final size:42
Alignment explanation
Indices: 2724510--2724860 Score: 354
Period size: 42 Copynumber: 8.1 Consensus size: 42
2724500 TTTTTTAAAA
* * *
2724510 GCTCCTCTAAACAGAGGCTCGACG-ACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
*
2724551 GCTCCTCTAAACAGAGGCACCACGAATTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
* *
2724593 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
* * *
2724634 GCTCCTCTAAACAGAGGCACGACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
*
2724676 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGA-AAAGTAAATT
* *
2724718 GCTCCTCTAAACAGAGGCACCA--AATTGCTCCTCTAAACAGAGGCACCATGACTT
1 GCTCCTCTAAACAGAGGCACCACGAA-T--T--T-TGAA-A-A-GTA--A--A-TT
* * * * *
2724772 TCCCCTCTAAATAGAGGCACCACG-ACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
* *
2724813 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
2724855 GCTCCT
1 GCTCCT
2724861 GACAATCATG
Statistics
Matches: 258, Mismatches: 31, Indels: 41
0.78 0.09 0.12
Matches are distributed among these distances:
41 87 0.34
42 129 0.50
44 2 0.01
46 4 0.02
47 4 0.02
48 2 0.01
49 4 0.02
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
54 21 0.08
55 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGAATTTTGAAAAGTAAATT
Found at i:2724649 original size:83 final size:83
Alignment explanation
Indices: 2724510--2724860 Score: 427
Period size: 83 Copynumber: 4.1 Consensus size: 83
2724500 TTTTTTAAAA
* * *
2724510 GCTCCTCTAAACAGAGGCTCGACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
2724575 AATTTTAAAAAGTAAATT
66 AATTTTAAAAAGTAAATT
*
2724593 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACGACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* **
2724658 ACTTTGGAAAAGTAAATT
66 AATTTTAAAAAGTAAATT
2724676 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA-
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
2724740 -AATTGCTCCTCTAAACAGAGGCACCATGACTT
65 GAA-T--T--T-TAAA-A-A-GTA--A--A-TT
* * *
2724772 TCCCCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* **
2724837 ACTTTTGGAAAGTAAATT
66 AATTTTAAAAAGTAAATT
2724855 GCTCCT
1 GCTCCT
2724861 GACAATCATG
Statistics
Matches: 230, Mismatches: 21, Indels: 34
0.81 0.07 0.12
Matches are distributed among these distances:
82 1 0.00
83 113 0.49
84 33 0.14
85 1 0.00
86 1 0.00
87 1 0.00
88 4 0.02
89 2 0.01
90 2 0.01
91 4 0.02
92 1 0.00
93 1 0.00
94 1 0.00
95 34 0.15
96 30 0.13
97 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
AATTTTAAAAAGTAAATT
Found at i:2724731 original size:125 final size:124
Alignment explanation
Indices: 2724510--2724739 Score: 415
Period size: 125 Copynumber: 1.8 Consensus size: 124
2724500 TTTTTTAAAA
*
2724510 GCTCCTCTAAACAGAGGCTCGACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACGACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
2724575 AATTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
66 AATTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
2724634 GCTCCTCTAAACAGAGGCACGACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACGACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
2724699 GACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
65 GAATTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
2724740 AATTGCTCCT
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
124 28 0.28
125 73 0.72
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACGACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
AATTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:2724742 original size:26 final size:26
Alignment explanation
Indices: 2724713--2724793 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
2724703 TTGAGAAAGT
2724713 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
2724739 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
* * * *
2724765 ATGACTTTCCCCTCTAAATAGAGGCACC
1 A--AATTGCTCCTCTAAACAGAGGCACC
2724793 A
1 A
2724794 CGACTTTGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 27 0.55
28 22 0.45
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:2724787 original size:28 final size:27
Alignment explanation
Indices: 2724721--2724800 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 27
2724711 GTAAATTGCT
* * *
2724721 CCTCTAAACAGAGGCACCA-AATTGCT
1 CCTCTAAACAGAGGCACCAGACTTTCC
2724747 CCTCTAAACAGAGGCACCATGACTTTCC
1 CCTCTAAACAGAGGCACCA-GACTTTCC
*
2724775 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCA-GACTTT
2724801 GGAAAGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 19 0.40
28 28 0.60
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (27 bp):
CCTCTAAACAGAGGCACCAGACTTTCC
Found at i:2724832 original size:41 final size:42
Alignment explanation
Indices: 2724775--2724860 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 42
2724765 ATGACTTTCC
*
2724775 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
2724816 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
2724858 CCT
1 CCT
2724861 GACAATCATG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 22 0.51
42 21 0.49
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:2725164 original size:43 final size:42
Alignment explanation
Indices: 2725058--2725194 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
2725048 TGAAAGATCC
** * *
2725058 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
2725101 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
2725144 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
2725187 TCATTTGA
1 TCATTTGA
2725195 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:2725426 original size:22 final size:22
Alignment explanation
Indices: 2725378--2725436 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
2725368 GGTTTCACTC
2725378 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
2725401 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
2725422 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
2725437 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:2726528 original size:19 final size:19
Alignment explanation
Indices: 2726506--2726563 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
2726496 AATTTGAATC
2726506 TTTTTTT-TTCATTTTCTCA
1 TTTTTTTCTT-ATTTTCTCA
*
2726525 TTTTTTTCTTTTTTTCTCA
1 TTTTTTTCTTATTTTCTCA
* *
2726544 TTTTTTTCTTTTTTTTTCA
1 TTTTTTTCTTATTTTCTCA
2726563 T
1 T
2726564 CATCTTCTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 34 0.94
20 2 0.06
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTTCTTATTTTCTCA
Found at i:2726536 original size:8 final size:9
Alignment explanation
Indices: 2726508--2726558 Score: 61
Period size: 8 Copynumber: 5.8 Consensus size: 9
2726498 TTTGAATCTT
2726508 TTTTTTTCA
1 TTTTTTTCA
*
2726517 -TTTTCTCA
1 TTTTTTTCA
*
2726525 TTTTTTTCT
1 TTTTTTTCA
2726534 TTTTTTCTCA
1 TTTTTT-TCA
2726544 TTTTTTTC-
1 TTTTTTTCA
2726552 TTTTTTT
1 TTTTTTT
2726559 TTCATCATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 14 0.39
9 14 0.39
10 8 0.22
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:2726571 original size:19 final size:19
Alignment explanation
Indices: 2726530--2726580 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
2726520 TCTCATTTTT
* ** *
2726530 TTCTTTTTTTCTCATTTTT
1 TTCTTTTTTTTTCATCATC
2726549 TTCTTTTTTTTTCATCATC
1 TTCTTTTTTTTTCATCATC
2726568 TTCTCTTTTTTTT
1 TTCT-TTTTTTTT
2726581 TCTCATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (19 bp):
TTCTTTTTTTTTCATCATC
Found at i:2730623 original size:59 final size:59
Alignment explanation
Indices: 2730496--2730779 Score: 360
Period size: 59 Copynumber: 4.7 Consensus size: 59
2730486 TCTTGTGTAG
* * *
2730496 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
*
2730553 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* * *
2730612 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA------TATTTTTTTTGAAAATTTATTTCTAA
* * * *
2730677 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTAGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCT-AA
*
2730736 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
2730780 GAACTTTTGA
Statistics
Matches: 198, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
57 34 0.17
58 14 0.07
59 90 0.45
60 7 0.04
65 53 0.27
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
Found at i:2730777 original size:124 final size:124
Alignment explanation
Indices: 2730496--2730778 Score: 383
Period size: 124 Copynumber: 2.4 Consensus size: 124
2730486 TCTTGTGTAG
* *
2730496 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--------TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTTTTTTTGAAAATTTATTTTTAA
* *
2730553 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
66 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAAATTTATTTCAAA
* *
2730612 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTTTTTTTGAAAATTTATTTTTAA
* *
2730677 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTAGAAATTTTGATTTTC-AA
66 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAAATTT-A-TTTCAAA
*
2730736 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTTT
2730779 GGAACTTTTG
Statistics
Matches: 146, Mismatches: 11, Indels: 14
0.85 0.06 0.08
Matches are distributed among these distances:
116 32 0.22
122 8 0.05
123 13 0.09
124 89 0.61
125 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (124 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACCTTTTTTTTTTTTGAAAATTTATTTTTAA
GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAAATTTATTTCAAA
Found at i:2730844 original size:22 final size:21
Alignment explanation
Indices: 2730803--2730901 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 21
2730793 TTATTTAAAG
2730803 AAAATAGAATAATAAAAAAAATA
1 AAAATA-AA-AATAAAAAAAATA
* *
2730826 AAAGTGAAAATAAATAAAAATA
1 AAAATAAAAATAAA-AAAAATA
*
2730848 AAAATAAAAATAAAGAAAAGT-
1 AAAATAAAAATAAA-AAAAATA
*
2730869 AAAACAAAAATAAAAATAAGATA
1 AAAATAAAAATAAAAA-AA-ATA
*
2730892 AAGATAAAAA
1 AAAATAAAAA
2730902 ATATTAAATA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
20 2 0.03
21 21 0.34
22 27 0.44
23 12 0.19
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (21 bp):
AAAATAAAAATAAAAAAAATA
Found at i:2730846 original size:6 final size:6
Alignment explanation
Indices: 2730810--2730901 Score: 66
Period size: 6 Copynumber: 15.3 Consensus size: 6
2730800 AAGAAAATAG
* *
2730810 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
2730856 AATAAA GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 AATAAA -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
2730902 ATATTAAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
4 4 0.06
5 7 0.10
6 49 0.70
7 5 0.07
8 3 0.04
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:2730850 original size:28 final size:29
Alignment explanation
Indices: 2730802--2730856 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 29
2730792 TTTATTTAAA
2730802 GAAAATAGAATAATAAAAAAAATAAAAGT
1 GAAAATAGAATAATAAAAAAAATAAAAGT
2730831 GAAAATA-AATAA-AAATAAAAATAAAA
1 GAAAATAGAATAATAAA-AAAAATAAAA
2730857 ATAAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 3 0.12
28 15 0.60
29 7 0.28
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.16
Consensus pattern (29 bp):
GAAAATAGAATAATAAAAAAAATAAAAGT
Found at i:2730851 original size:16 final size:16
Alignment explanation
Indices: 2730813--2730901 Score: 83
Period size: 16 Copynumber: 5.5 Consensus size: 16
2730803 AAAATAGAAT
2730813 AATAAAAA-AAATAAA
1 AATAAAAATAAATAAA
* *
2730828 AGTGAAAATAAATAAA
1 AATAAAAATAAATAAA
2730844 AATAAAAATAAA-AATA
1 AATAAAAATAAATAA-A
* * *
2730860 AAGAAAAGTAAAACAAA
1 AATAAAAAT-AAATAAA
2730877 AATAAAAATAAGATAAA
1 AATAAAAATAA-ATAAA
*
2730894 GATAAAAA
1 AATAAAAA
2730902 ATATTAAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
15 8 0.14
16 27 0.46
17 22 0.37
18 2 0.03
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.15
Consensus pattern (16 bp):
AATAAAAATAAATAAA
Found at i:2730872 original size:27 final size:28
Alignment explanation
Indices: 2730819--2730900 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 28
2730809 GAATAATAAA
* * * *
2730819 AAAAATAAAAGTGAAAATAAATA-AAAAT
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
2730847 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
2730874 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
2730901 AATATTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 4 0.09
27 23 0.50
28 19 0.41
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:2731873 original size:9 final size:8
Alignment explanation
Indices: 2731854--2731952 Score: 51
Period size: 8 Copynumber: 11.5 Consensus size: 8
2731844 ATATTATAGG
2731854 ATAAAAAA
1 ATAAAAAA
2731862 ATAAAAACA
1 ATAAAAA-A
2731871 ATAATATATAA
1 ATAA-A-A-AA
* *
2731882 TTAAATAA
1 ATAAAAAA
2731890 AT--AAAA
1 ATAAAAAA
*
2731896 ATACAAAA
1 ATAAAAAA
2731904 ATAAATAAA
1 ATAAA-AAA
2731913 ATAGAAAATA
1 ATA-AAAA-A
2731923 A-AAAAAA
1 ATAAAAAA
*
2731930 TATTAATAATA
1 -A-TAA-AAAA
2731941 ATAAAAAA
1 ATAAAAAA
2731949 ATAA
1 ATAA
2731953 TAAATACATA
Statistics
Matches: 71, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
6 5 0.07
7 1 0.01
8 30 0.42
9 17 0.24
10 9 0.13
11 8 0.11
12 1 0.01
ACGTcount: A:0.75, C:0.02, G:0.01, T:0.22
Consensus pattern (8 bp):
ATAAAAAA
Found at i:2731873 original size:27 final size:27
Alignment explanation
Indices: 2731803--2731896 Score: 73
Period size: 28 Copynumber: 3.3 Consensus size: 27
2731793 AAAATCAAAT
* * *
2731803 AAATAAAAAAATATTAGATAATTAGAAAA
1 AAATAAAAAAATAATATAGAATT--AAAA
* *
2731832 GATAATAAAAAAATATTATAGGA-TAAAA
1 -A-AATAAAAAAATAATATAGAATTAAAA
* *
2731860 AAATAAAAACAATAATATATAATTAAAT
1 AAATAAAAA-AATAATATAGAATTAAAA
2731888 AAATAAAAA
1 AAATAAAAA
2731897 TACAAAAATA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.15
27 10 0.19
28 17 0.31
30 2 0.04
31 17 0.31
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.24
Consensus pattern (27 bp):
AAATAAAAAAATAATATAGAATTAAAA
Found at i:2731920 original size:7 final size:6
Alignment explanation
Indices: 2731888--2732007 Score: 63
Period size: 6 Copynumber: 19.7 Consensus size: 6
2731878 ATAATTAAAT
* *
2731888 AAATAA AAATACA AAA-AT AAAT-A AAATAGA AAATAA AAA-AA ATATTAA
1 AAATAA AAATA-A AAATAA AAATAA AAATA-A AAATAA AAATAA A-AATAA
* * * * *
2731936 TAATAA TAA-AA AAATAA TAAATACA TAGGATAT ACAT-A AAATATA AAAT-A
1 AAATAA AAATAA AAATAA -AAATA-A -A-AATAA AAATAA AAATA-A AAATAA
2731986 AAATAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAAT
2732008 GACAAAGATA
Statistics
Matches: 90, Mismatches: 11, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
5 22 0.24
6 39 0.43
7 23 0.26
8 3 0.03
9 3 0.03
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (6 bp):
AAATAA
Found at i:2731920 original size:25 final size:27
Alignment explanation
Indices: 2731789--2731952 Score: 93
Period size: 29 Copynumber: 5.7 Consensus size: 27
2731779 AGCCCTCCAA
* *
2731789 AATAAAAATCAAATAAATAAAAAAATATT
1 AATAATAAT-AAAAAAATAAAAAAATA-T
* *
2731818 AGATAATTAGAAAAGATAATAAAAAAATAT
1 A-ATAATAATAAAA-A-AATAAAAAAATAT
* **
2731848 TAT-AGGATAAAAAAATAAAAACAATAAT
1 AATAATAATAAAAAAATAAAAA-AAT-AT
*
2731876 ATATAATTAAATAAATAAAAATACAAAAATA-
1 A-ATAA-T-AAT-AA-AAAAATAAAAAAATAT
*
2731907 AATAA-AAT-AGAAAATAAAAAAAATATT
1 AATAATAATAAAAAAAT-AAAAAAATA-T
2731934 AATAATAATAAAAAAATAA
1 AATAATAATAAAAAAATAA
2731953 TAAATACATA
Statistics
Matches: 104, Mismatches: 15, Indels: 33
0.68 0.10 0.22
Matches are distributed among these distances:
24 5 0.05
25 9 0.09
26 8 0.08
27 12 0.12
28 13 0.12
29 14 0.13
30 12 0.12
31 13 0.12
32 3 0.03
33 5 0.05
34 10 0.10
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (27 bp):
AATAATAATAAAAAAATAAAAAAATAT
Found at i:2731957 original size:27 final size:28
Alignment explanation
Indices: 2731861--2731958 Score: 61
Period size: 27 Copynumber: 3.7 Consensus size: 28
2731851 AGGATAAAAA
*
2731861 AATAAAAACAATAAT--ATA-TAATTA-
1 AATAAAAACAATAATAAATATTAATAAT
* *
2731885 AATAAATAAAAATACA-AAA-ATAAATAA-
1 AATAAA-AACAATA-ATAAATATTAATAAT
* *
2731912 AATAGAAAATAA-AAAAAATATTAATAAT
1 AATA-AAAACAATAATAAATATTAATAAT
2731940 AATAAAAA-AATAATAAATA
1 AATAAAAACAATAATAAATA
2731959 CATAGGATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
24 6 0.10
25 7 0.12
26 8 0.14
27 31 0.53
28 6 0.10
ACGTcount: A:0.73, C:0.02, G:0.01, T:0.23
Consensus pattern (28 bp):
AATAAAAACAATAATAAATATTAATAAT
Found at i:2731988 original size:12 final size:12
Alignment explanation
Indices: 2731971--2732005 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
2731961 TAGGATATAC
2731971 ATAAAATATAAA
1 ATAAAATATAAA
2731983 ATAAAATA-AAA
1 ATAAAATATAAA
2731994 ATAAAA-ATAAA
1 ATAAAATATAAA
2732005 A
1 A
2732006 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:2731994 original size:11 final size:11
Alignment explanation
Indices: 2731884--2732007 Score: 76
Period size: 12 Copynumber: 10.4 Consensus size: 11
2731874 ATATATAATT
2731884 AAAT-AAATAA
1 AAATAAAATAA
2731894 AAATACAAA-AA
1 AAATA-AAATAA
2731905 TAAATAAAATAGA
1 -AAATAAAATA-A
2731918 AAATAAAA-AA
1 AAATAAAATAA
2731928 AATATTAATAATAA
1 AA-A-TAA-AATAA
2731942 TAAA-AAAATAA
1 -AAATAAAATAA
*
2731953 TAAATACATAGGATAT
1 -AAATA-A-A--ATAA
*
2731969 ACATAAAATATA
1 AAATAAAATA-A
2731981 AAATAAAATAA
1 AAATAAAATAA
2731992 AAATAAAAATAA
1 AAAT-AAAATAA
2732004 AAAT
1 AAAT
2732008 GACAAAGATA
Statistics
Matches: 93, Mismatches: 4, Indels: 32
0.72 0.03 0.25
Matches are distributed among these distances:
10 7 0.08
11 24 0.26
12 43 0.46
13 5 0.05
14 5 0.05
15 6 0.06
16 3 0.03
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:2732369 original size:26 final size:26
Alignment explanation
Indices: 2732340--2732392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2732330 GTTGACTTAG
*
2732340 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2732366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2732392 G
1 G
2732393 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2733732 original size:706 final size:711
Alignment explanation
Indices: 2732363--2733732 Score: 2092
Period size: 706 Copynumber: 1.9 Consensus size: 711
2732353 ATTCCCAGTC
* * ***
2732363 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGATAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCACGATAGCACATGCT
* *
2732428 GGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCAAG
66 GGGCTCCGGCATGTGCTGGTGCCGCATTTCTCTTCCTCGGGGCACCAT--CC--AGCA-CG--AG
* * *
2732493 AGAACATGACCGACGGCATTGGGGTTCCAGCGATCGAAGGGGTCGGGGGGTGTGGGCACATGATG
124 AGAACATGACCGACGACATTGGGGTTCCAGCGATCGAAGGGGCCGGGGGGTGTGCGCACATGATG
2732558 TGCAGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAAAACTC
189 TGCAGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAAAACTC
* * *
2732623 ACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTCTATAAGCTTACTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2732688 ATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGATTT
319 ATGAGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGATTT
* *
2732753 TGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAA
384 TGCGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAA
2732818 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2732883 TCGCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATGAAAATGG
514 TCGCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGG
* * * *
2732948 CATTGGCACCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
579 CATTGGCACCTAGAAAAATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTG
2733013 CGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGTCCGCCCGTCCGCCCGCTCATTTCGTCGGTTG
644 CGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGTCCGCCCGTCCGCCCGCTCATTTCGTCGGTTG
2733078 GCT
709 GCT
*
2733081 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCACGGTAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCACGATAGCACATGCT
* *
2733146 GGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCACT-GGGGCACCAT-C-GC-CG-GAGAACC
66 GGGCTCCGGCATGTGCTGGTGCCGCATTTCTCTTC-CTCGGGGCACCATCCAGCACGAGAGAACA
* * * *
2733206 TGATCGACGACATTGGGGTTTCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC-GA
130 TGACCGACGACATTGGGGTTCCAGCGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCAG-
* * * * *
2733269 TGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCTAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAAAACTCACACC
*
2733334 CCCTTAAAGAGCATTTGAGATTCTA-AAGGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATTA
259 CCCTTAAAGAGCATTTGAGATTCTATAA-GCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGA
* * *
2733398 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTG
323 GGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGATTTTGCG
* * *
2733463 CATGCCAAAAAAAATACAAGGATAACGTCTACCAATTTTGGGGCCGAAACTCCTTCTGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAAT
* * * ** *
2733528 TTTAGAAAATCTCTAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGC
* * *
2733593 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATT
518 CATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCATT
*
2733658 GGCATGC-AGAAAAATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGCGC
583 GGCA-CCTAGAAAAATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGCGC
*
2733722 ATCGCGTCTCT
647 ATCCCGTCTCT
2733733 GGCCGACGTT
Statistics
Matches: 594, Mismatches: 54, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
705 3 0.01
706 450 0.76
707 33 0.06
710 2 0.00
712 2 0.00
715 1 0.00
718 102 0.17
719 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (711 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCACGATAGCACATGCT
GGGCTCCGGCATGTGCTGGTGCCGCATTTCTCTTCCTCGGGGCACCATCCAGCACGAGAGAACAT
GACCGACGACATTGGGGTTCCAGCGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTGCAGTG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAAAACTCACACCCC
CTTAAAGAGCATTTGAGATTCTATAAGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGA
CACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGATTTTGCGCAT
GCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTT
AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCAT
AAAACTTCACGTAAAGGCTTAAGGGACCATTGTATAAATTTACAAACCATAAAAATGGCATTGGC
ACCTAGAAAAATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCC
CGTCTCTCTTGCCGGCGTAGTGCCCGTCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCT
Found at i:2736982 original size:705 final size:713
Alignment explanation
Indices: 2735666--2737173 Score: 2245
Period size: 705 Copynumber: 2.1 Consensus size: 713
2735656 CGGTTGAGCA
* * * *
2735666 CCCGCACGCTCGTTTC-ACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 CCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * * *
2735730 AAGACCGAGGGTTGCGGTAGCACATACTGGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGT
65 CAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGT
2735795 CGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAGGCGGAATTAGGGTTACAACAATCGG
130 CGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAGGCGGAATTAGGGTTACAACAATCGG
*
2735860 GGGGCTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCGTTATATTGGCC
195 GGGGC-GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCC
*
2735925 CCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
259 CCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
2735990 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTG
324 TGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTG
* * ** *
2736055 TACACTTCGAGTTTTTAGCTGATTTGTTTTGTGCATGCCAACTAAAATACAAGGATCACCTCTAC
389 TACACTTCGAGTTTTTAGCTGATTTGTGTTGTACATGCCAAAAAAAATACAAGGATCACATCTAC
*
2736120 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAA
454 CAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAA
* *
2736185 AAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTAAAGGGACCA
519 AAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTAAAGGGACCA
* * *
2736250 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGT-TTGTAGAAATATAAAGATGTGCCTAAAC
584 TTGTATGAATTTACAAGCCATAAAAATGGCATT-GTCATGCAGAAATATAAAGATGAGCCTAAAC
2736314 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGG-C-C-T-GCG-T-AAT-
648 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGTCACGTAGCGTTGAATC
2736372 G
713 G
2736373 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * *
2736438 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCG-C
66 AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGTC
* * * * * ****
2736502 GGGGCAGCATCACCGGAGCATCG-CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGA
131 GGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACAGGCGGAATTAGGGTTACAACAATCG-
*
2736566 GGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CACTTATATTGGC
194 GGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTC-CTTATATTGGC
* *
2736629 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
258 CCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
* * *
2736694 TTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTT
*
2736759 GTACACTTTGAGTTTTTAGCTGAATTT-TGTTGTACATGCCAAAAAAAATACAAGGATCACATCT
388 GTACACTTCGAGTTTTTAGCTG-ATTTGTGTTGTACATGCCAAAAAAAATACAAGGATCACATCT
* ** * * *
2736823 ACCAAGTTTGGATCCAAAAATCCTTCTGAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTTT
452 ACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTT
* * * *
2736888 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGAC
517 AAAAATCATAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTAAAGGGAC
*
2736953 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGAGCCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATAAAGATGAGCCTAAA
* * * *
2737018 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGACGTAGTGTTTGC
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGTC-ACGTAGCG-TTGA
*
2737083 CTGCCAG
710 AT--C-G
* * *
2737090 CCCGCCCGCTCGTGTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-AAGC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-C
*
2737154 CAGACCGAGGGTTGTGGCAG
65 CAGACCGAGGGTTGCGGCAG
2737174 TAGGATCAGC
Statistics
Matches: 721, Mismatches: 61, Indels: 28
0.89 0.08 0.03
Matches are distributed among these distances:
704 3 0.00
705 453 0.63
706 58 0.08
707 120 0.17
708 2 0.00
709 1 0.00
710 2 0.00
712 1 0.00
713 1 0.00
716 2 0.00
717 78 0.11
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (713 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
AGACCGAGGGTTGCGGCAGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGTC
GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAGGCGGAATTAGGGTTACAACAATCGGG
GGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGATTTGTGTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCA
AGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAAA
ATCATAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTAAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATAAAGATGAGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGTCACGTAGCGTTGAATCG
Found at i:2737309 original size:26 final size:26
Alignment explanation
Indices: 2737279--2737331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2737269 GTTGACTTAG
2737279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
2737305 GCATACGGAGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2737331 G
1 G
2737332 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2738671 original size:720 final size:701
Alignment explanation
Indices: 2737305--2738756 Score: 2063
Period size: 720 Copynumber: 2.0 Consensus size: 701
2737295 CCCAGTCTAA
* ** *
2737305 GCATACGGAGTTCATTTGCAGTCTAAGATCAGACCGGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
2737370 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCCTAACCGG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCCTAACCGG
*
2737435 CGGCATTGGGGTTCCGACGATTGCGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
130 CGGCATTGGGGTTCCGACGATGGCGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
2737500 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
195 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
2737565 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
260 GCATTTAAAAATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
2737630 TTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTGAGCTGATTTTTTTGTGCATGCCAAAAAA
325 TTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTGAGCTAATTTTTTTGTGCATGCAAAAAAA
* * * * **
2737695 ATACAAGGATCACGTCTTCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATTCTG
390 ATACAAGGATCACGTCTCCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCA
* *
2737760 AACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACG
455 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTCACCATGAAACTTCACG
*
2737825 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGAATGCAGAAATA
520 TGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGAAT-CAGAAATA
* *
2737890 TGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGGCTTGCGCATCCGGTCTCTCTAG
584 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCGGTCTCTCTAG
* * * * * *
2737955 TCGACGTTGTGCCTGCATGCCCGCCCGCCCGCTCGTTTCATCGGTTGGGTTAG
649 CCGACGTAGTGCCCGCACGCACGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * *
2738008 GCATACGGAGTTCATTCCTAGTGTAAGATCTGACCGAACTGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
*
2738073 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCACCGGAGCATCGCTGGAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCAT---C---G---C-C-GGAG
* * * *
2738137 AA-CCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
118 AACCCTAACCGGCGGCATTGGGGTTCCGACGAT-GGCGGGG-C-GGGGGGTGTGCACACATGATG
* * *
2738201 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
180 TGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
2738266 ACACCCCCTTAAAGAGCATTTAAAAATTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
245 ACACCCCCTTAAAGAGCATTTAAAAATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
* *
2738331 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAATTTTTT
310 ATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTGAGCTAA--TTTT
* * * * * *
2738395 TTTTTGCATATG-AAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGACCAATACTCGTTCTA
372 TTTGTGC--ATGCAAAAAAAATACAAGGATCACGTCT-CCAAGTTTGGGACCAAAAATCCTTCCA
*
2738459 AAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTC
434 AAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
** *
2738524 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATTAAAA
499 ATCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCA-AAAAA
*
2738589 A-GGCATTGGCACAT-AGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATG
563 ATGGCATTGG-A-ATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
* * * *
2738652 ACTTGCGCATATC-GTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTTGTTTCAT
626 ACTTGCGCAT-CCGGTCTCTCTAGCCGACGTAGTGCCCGCACGCACGCCCGCCCGCTCGTTTCAT
2738716 CGGTTGGCTTAG
690 CGGTTGGCTTAG
2738728 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGAT
2738757 TGGACCAGAT
Statistics
Matches: 662, Mismatches: 60, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
702 4 0.01
703 95 0.14
706 1 0.00
709 1 0.00
712 1 0.00
713 29 0.04
714 11 0.02
715 31 0.05
716 165 0.25
718 10 0.02
719 23 0.03
720 280 0.42
721 9 0.01
722 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (701 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCCTAACCGGC
GGCATTGGGGTTCCGACGATGGCGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
ACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTAAAAATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
TCAAATGGTCACAAAATCTTGTACACTCGAGTTTTGAGCTAATTTTTTTGTGCATGCAAAAAAAA
TACAAGGATCACGTCTCCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTAAAAAAATCCCAA
ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTCACCATGAAACTTCACGT
GAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGAATCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCGGTCTCTCTAGCC
GACGTAGTGCCCGCACGCACGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:2738926 original size:26 final size:26
Alignment explanation
Indices: 2738887--2738939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2738877 GTTGACTTAG
*
2738887 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
* *
2738913 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
2738939 G
1 G
2738940 ATAGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCACAGTCTAA
Found at i:2740531 original size:26 final size:26
Alignment explanation
Indices: 2740495--2740547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2740485 GTTGACTTAG
*
2740495 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2740521 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2740547 G
1 G
2740548 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2741408 original size:26 final size:26
Alignment explanation
Indices: 2741372--2741424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2741362 GTTGACTCAG
*
2741372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
2741398 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
2741424 G
1 G
2741425 ATCGGACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:2743179 original size:26 final size:26
Alignment explanation
Indices: 2743143--2743220 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
2743133 GTTGACTTAG
* *
2743143 GCATACGGAGTTCATTCCCAGTTTCA
1 GCATACGGAGTTCATTCCCAGTCTAA
2743169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2743195 GCATACGGGGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2743220 G
1 G
2743221 ATCGGATCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 10 0.20
26 39 0.80
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2743693 original size:86 final size:86
Alignment explanation
Indices: 2743543--2743717 Score: 269
Period size: 86 Copynumber: 2.0 Consensus size: 86
2743533 AATGGTCACA
* * *
2743543 AAATTTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATC
1 AAATCTTGTACACTTCGACTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
2743608 ACGTCTACCAAGTTCAGGGCC
66 ACGTCTACCAAGTTCAGGGCC
* * * *
2743629 AAATCTTGTACACTTCGAGTTTGTAGCTGATTTTTTTTTTGCATGCCAACAAAAATTCAAGGATC
1 AAATCTTGTACACTTCGACTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
**
2743694 ACGTCTACCAAGTTTGGGGCC
66 ACGTCTACCAAGTTCAGGGCC
2743715 AAA
1 AAA
2743718 ACTCCTTTTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (86 bp):
AAATCTTGTACACTTCGACTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTCAGGGCC
Found at i:2744183 original size:26 final size:26
Alignment explanation
Indices: 2744153--2744202 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2744143 GTTGACTTAG
2744153 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
2744179 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGCAGTTCATTCCCAGTCT
2744203 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:2745066 original size:26 final size:26
Alignment explanation
Indices: 2745030--2745082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2745020 GTTGATTTAG
*
2745030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2745056 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2745082 G
1 G
2745083 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2745509 original size:880 final size:876
Alignment explanation
Indices: 2743629--2746707 Score: 3650
Period size: 877 Copynumber: 3.5 Consensus size: 876
2743619 GTTCAGGGCC
* * * *
2743629 AAATCTTGTACACTTCGAGTTTGTAGCTGATTTTTTTTTTGCATGCCAACAAAAATTCAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* ** * *
2743694 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAGGTTTTAAAAAATCTCGAACCATAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
2743759 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTA
130 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* **
2743824 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG-TACGCAGAAATATGAAGATGT
195 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCT-CATAGAAATATGAAGATGT
* ** * * *
2743888 GCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCCCTAGCCGACGTAG
259 GCCT-AA---A-C--CCAGCCTATCGA--CA-TAC-T-CG--T-AC-TCTCTCTGGCCGACGTAG
** ** *
2743953 TGCCCG--CCCGCCCGTCGGCTCGTTTTGTCGGTTGGCTTAGGCATACATAGTTCATTCACAGTC
308 TGCCCGCCCCCGCCCGTC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** ** * * * *
2744016 TAAGATCAGACCAGATTGAAG-GGTTGTGGCAGCAGGATCGACAGCATGCAGAAGGGGACCCGAT
372 TAAGATCAGACCAGA-CCAAGAGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGT
* ** * * *
2744080 CGATCCCCAGCTTGTGCATCCCGCCCCTCTAGCTAGCTGAGCGCCCGTACGCTCGTTTCATGGGT
436 CGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC-CCCGCAAGCTCGTTTCGTGGGT
*
2744145 TGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCA
500 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-TCT-AGATC-
* * * * *
2744210 GACCAGACTGAGGGTTGCGGCAGGACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTT
562 GACC-GACCGAGGGTTGCGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTT
* *
2744275 CGTC-GGAGCACCATCACCGGAGCATCACC-G-GAACCTGACG-CGGCATTGGGGTTCTGACGAT
626 CGTCGGGA-CACCATCA-CGGAGCATCACCGGAGAACTTGACGACGGCATTGGGTTTC-GACGAT
2744336 C-GGGGGGCCG-GGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
688 CAGGGGGGCCGAGGGGGT-GTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
2744399 TTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
750 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* *
2744464 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATAGTCACA
814 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
2744527 AAATCTTGTACACTTCGAGTTTTTAGCAGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* *
2744591 ACGTTTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * *
2744656 AGTTTCAAAAATCGTGAAAAATAAAAAAC-AGGTCATCTTGCCATGAAACTTCATGTGAAGGTTT
130 AGTTTCAAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
2744720 AAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCTCATAGAAATATGAAGATGT
194 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCATAGAAATATGAAGATGT
*
2744785 GCCTAAACCCAG-CTA-C-A-AT-C-C-TA-TCTCTCTGGCCGACGTAGTGCCCGCCCACCCACC
259 GCCTAAACCCAGCCTATCGACATACTCGTACTCTCTCTGGCCGACGTAGTGCCCG-CC-CCCGCC
* *
2744842 CGTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGA
322 CGTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * ** *
2744907 CCAAGAGAATTCCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGC
387 CCAAGAG-GTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGT
* *
2744972 GCATCCCGCCCCTCTGGCCGGCTGAGCATCCGCAAGCTCGTTTCGTGGGTTGATTTAGGCATACG
451 GCATCCCGCCCCTCTGGCCGGCTGAGC-CCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
2745037 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGT
515 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-ATCT-AGATC-GACC-GACCGAGGGT
* * * ** *
2745102 TGCTGCAGCACATGCTGGGGTTGGGCATGTGCCGGTATCACATTTTTCTTCGTCGGGACATCATC
576 TGCGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATC
*
2745167 ACAGGAGCATCACCGGAGAACTTGACCGACGGCATTGGCGTTTCGACGATCAGGGGGGCCGAGGC
641 AC-GGAGCATCACCGGAGAACTTGA-CGACGGCATTGG-GTTTCGACGATCAGGGGGGCCGAGGG
* * **
2745232 GGTGTGTGCACATGATATGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCATTCA
703 GGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
2745297 TCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
768 TCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
2745362 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACA
832 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
2745407 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* *
2745472 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
2745537 GTTTCAAAAATCGTGAATAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAA
131 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
2745602 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGTATTGG-T-ATGCAGAAATATGAAGATGT
196 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCAT--AGAAATATGAAGATGT
*
2745665 GCCTAAACCCAGCTACCACCCTATCGATCCATAGCTTGCGTATCCCGTCTCTCTGGCCGACGTGG
259 GCCTAAACCCAG-------CCTATCGA--CATA-C-T-CGTA---C-TCTCTCTGGCCGACGTAG
* * * * * *
2745730 TGCCCGCTCGCACGCCCGCCCGCTTGTTTCCTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAG
308 TGCCCGC-C-CCCGCCCG-TCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
2745795 TCTAAGATCGGACCAGACCGAG-GGTTACGGTTGTAGGATCGGCAGCAC-CTAGAGGGGGACCCG
370 TCTAAGATCAGACCAGACCAAGAGGTTACGGTAGCAGGATCGACAGCACGC-AGAGGGGGACCCG
* * *
2745858 GTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCGCTCGCATGCTCGTTTCGTGG
434 GTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC-CCCGCAAGCTCGTTTCGTGG
*
2745923 GTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C--C--GA-CT
498 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATCTAGATCG
* * *
2745968 A--GACCGAGGGTTACGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
563 ACCGACCGAGGGTTGCGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * * *
2746031 TCGGGGCACCATCATCGGAGCATCATCGGAGAACTTGATCGACGGAATTGGGGTTCCGACGATCA
628 TCGGGACACCATCA-CGGAGCATCACCGGAGAACTTGA-CGACGGCATT-GGGTTTCGACGATCA
*
2746096 GGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
690 GGGGGGCCGA-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
2746161 CCCCCTATCCCTCATCAAACCTCGAGAACTCACATTCCCTTAAAGAGCATTTGAGATTTTACAGG
754 CCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
2746226 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACA
818 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* **
2746285 AAATCTTGTACACCTT-GAGTTTTTAGCT-AATTTTTTTTTAGCATGCCAACAAAAATTGAAGGA
1 AAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTAT-GCATGCCAACAAAAATACAAGGA
** * *
2746348 TCACGTCTAATAAGTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAA
64 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
2746413 AAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
128 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
2746478 CAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGA
193 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-T-CATAGAAATATGAAGA
* * * * **
2746541 TGTGCCTAAATCAACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGTG
256 TGTGCCT--A--AA-C--CCAGCCTATCGA--CAT-AC-T-CG--T-AC-TCTCTCTGGCCGACG
* * * *
2746606 TAATGCCCGCCCGCCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
305 TAGTGCCCGCCC-CC-GCCCG-TCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
2746671 CAGTCTAAGATCAGACCAGACCGAG-GGTTGCGGTAGC
367 CAGTCTAAGATCAGACCAGACCAAGAGGTTACGGTAGC
2746708 GCATGCTGGG
Statistics
Matches: 1915, Mismatches: 191, Indels: 169
0.84 0.08 0.07
Matches are distributed among these distances:
873 22 0.01
875 3 0.00
876 57 0.03
877 361 0.19
878 248 0.13
879 286 0.15
880 342 0.18
881 82 0.04
882 20 0.01
883 8 0.00
884 2 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 5 0.00
889 4 0.00
890 5 0.00
891 1 0.00
892 1 0.00
893 3 0.00
894 2 0.00
895 1 0.00
896 5 0.00
897 207 0.11
898 31 0.02
899 2 0.00
901 1 0.00
902 1 0.00
903 120 0.06
904 31 0.02
905 59 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCATAGAAATATGAAGATGTGC
CTAAACCCAGCCTATCGACATACTCGTACTCTCTCTGGCCGACGTAGTGCCCGCCCCCGCCCGTC
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
GAGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATC
CCGCCCCTCTGGCCGGCTGAGCCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCATCTAGATCGACCGACCGAGGGTTGCGGCAGCA
CATGCTGGGGTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCACGGAGCATC
ACCGGAGAACTTGACGACGGCATTGGGTTTCGACGATCAGGGGGGCCGAGGGGGTGTGTGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACA
Found at i:2746322 original size:878 final size:870
Alignment explanation
Indices: 2745056--2746707 Score: 2457
Period size: 879 Copynumber: 1.9 Consensus size: 870
2745046 CCCAGTCTAA
* * * *
2745056 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
2745121 GTTGGGCATGTGCCGGTATCACATTTTTCTTCGTCGGGACATCATCACAGGAGCATCACCGGAGA
66 GTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC-GGAGCATCA-CGGAGA
* * * * *
2745186 ACTTGACCGACGGCATTGGCGTTTCGACGATCAGGGGGGCCGA-GGCGGTGTGTGCACATGATAT
129 ACTTGA-CGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
* ** *
2745250 GCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCATTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2745315 CACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
258 CACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
2745380 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTT
2745445 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
386 -TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
* * *
2745510 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAATAATAGAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2745575 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGTA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
2745640 TTGGTATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCATAGCTTGCG
580 TTGGTATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCAT-GCTTGCG
* * * * * *
2745705 TATCCCGTCTCTCTGGCCGACGTGGTGCCCGCTCGCACGCCCGCCCGCTTGTTTCCTCAGTTGGC
644 TATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-CACCCGCCCGCTCGTTTCATCGGTTGGC
* * * *
2745770 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTTGTAGGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATC
* * *
2745835 GGCAGCAC-CTAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGTCGGCTG
773 GACAGCACGC-AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
2745899 AGC-GCTCGCATGCTCGTTTCGTGGGTTGACTTAG
837 AGCATC-CGCAAGCTCGTTTCGTGGGTTGACTTAG
* *
2745933 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2745998 GTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCATCGGAGA
66 GTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA-CGGAGCATCA-CGGAGA
*
2746063 ACTTGATCGACGGAATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
129 ACTTGA-CGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
2746128 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2746193 CATTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2746258 GGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTAA-TTTTTT
** ** *
2746322 TTAGCATGCCAACAAAAATTGAAGGATCACGTCTAATAAGTTTGGGCCCAAAACTCCTTTCGAAA
385 TT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAA
* * *
2746387 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
448 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2746452 TTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
2746517 CATTGGCATGCAAAAATATGAAGATGTGCCTAAATCAACCTACCACCCTATCGATCCATGGCTTG
578 CATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCAT-GCTTG
* * ** * *
2746582 CGCATCCCGTCTCTTTGGCCGGTGTAATGCCCGCCCGCCTACCCGCCCGCTCGTTTCGTCGGTTG
642 CGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-ACCCGCCCGCTCGTTTCATCGGTTG
*
2746647 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGC
2746708 GCATGCTGGG
Statistics
Matches: 699, Mismatches: 68, Indels: 14
0.90 0.09 0.02
Matches are distributed among these distances:
877 155 0.22
878 245 0.35
879 299 0.43
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
GTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACGGAGCATCACGGAGAAC
TTGACGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
TGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCATGCTTGCGTATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCAC
GCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCATCCGC
AAGCTCGTTTCGTGGGTTGACTTAG
Found at i:2747626 original size:26 final size:25
Alignment explanation
Indices: 2747597--2747664 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 25
2747587 CATATGGAGT
*
2747597 TCATTCCCAGTCTCAGCATACAGAG
1 TCATTCCCAGTCTAAGCATACAGAG
*
2747622 CTCATTCCCAGTCTAAGCATACGGAG
1 -TCATTCCCAGTCTAAGCATACAGAG
2747648 TGCATTCCCAGTCTAAG
1 T-CATTCCCAGTCTAAG
2747665 ATCAGATCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 1 0.03
26 38 0.97
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (25 bp):
TCATTCCCAGTCTAAGCATACAGAG
Found at i:2748060 original size:925 final size:927
Alignment explanation
Indices: 2746812--2748567 Score: 2732
Period size: 925 Copynumber: 1.9 Consensus size: 927
2746802 TCGGGGGGGC
* *
2746812 CGGGGCACCATCGCCGGAGCATCATCAGAGAACCTGACCAACGGAATTGGGATTCAGACGATCGA
1 CGGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCAACGGAATTGGGATTCAGACGATCGA
* *
2746877 AGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGGCC
66 AGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCC
* *
2746942 CGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
2747007 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
2747072 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * * * * *
2747137 AAGTTTGCAGCTAAAACTCCTTCTGAAAAAGTTTTAAAAAATGCCAAATCGTAAAAAGTTTCAAA
326 AAGTTTGCAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGCCAAACCGCAAAAAGTTTCAAA
** * *
2747202 AATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCAT
391 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
2747267 TGTATAAATTTACAATCCATAAAAATGGCATTCGTACGTAGAAATATGAAGGTGTGCCTAAACCA
456 TGTATAAATTTACAAGCCATAAAAAAGGCATTCGCACGCAGAAATATGAAGATGTGCCTAAACCA
* ** *
2747332 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTTGGCGTAGTG-C-CCGCC
521 ACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCGCCGCC
* *
2747395 CGCCCGTCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAAA
586 CGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* *
2747460 CC-AGACGGAGGGTTACGGCAGTAGGATCGATAGCACGCAAAGGGGGACCCGGTCGATCCCCGAC
651 CCGA-ACGGAGGGTTACGACAGTAGGATCGATAGCACACAAAGGGGGACCCGGTCGATCCCCGAC
* * * * ** *
2747524 TTGCGCATTCTGCCCCTCTGGCCGGCTAAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCA
715 TTGCACATCCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACCTAGGCA
* *
2747589 TA-TGGAGTTCATTCCCAGTCTCAGCATACAGAGCT-CATTCCCAGTCTAAGCATACGGAGTGCA
780 TACT-GAGTTCATTCCCAGTCTAAGCATACAGAG-TGCATTCCCAATCTAAGCATACGGAGTGCA
2747652 TTCCCAGTCTAAGATCAGATCGGAGCGAAGGTTGCGGCAACACATGCTGGGCTCGGGCATCTGCT
843 TTCCCAGTCTAAGATCAGATCGGAGCGAAGGTTGCGGCAACACATGCTGGGCTCGGGCATCTGCT
2747717 GGTGTCGCATTTTTCTTCGT
908 GGTGTCGCATTTTTCTTCGT
* * * * * *
2747737 CGGGGCACTATCACCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTTC-GACGATCG
1 CGGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCAACGGAATT-GGGATTCAGACGATCG
* *
2747801 AGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
65 AAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCC
*
2747866 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAAGTT
130 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
*
2747931 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTTACAAAATCTTG
195 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
2747996 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACTAGGATCACGTCTAC
260 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
** * * * **
2748061 CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTCAAAAATGTCGAACCGCAAAAAGTTTTGA
325 CAAGTTTGCAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGCCAAACCGCAAAAAGTTTCAA
*
2748126 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCA
390 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
2748191 TTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
455 TTGTATAAATTTACAAGCCATAAAAAAGGCATTCGCACGCAGAAATATGAAGATGTGCCTAAACC
*
2748256 CACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGTCC
520 AACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-CCG-CC
* * * *
2748321 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATC
583 GCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
2748386 AAACCGAACTGAGGGTTGCGACAGTAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCG
648 AAACCGAACGGAGGGTTACGACAGTAGGATCGATAGCACACAAAGGGGGACCCGGTCGATCCCCG
* * * * * *
2748451 GCTTGCACATCCCGCCCCTCTGGCTGACTGAGCGCCCGCATGCTCGTTTCATGTGTTGACCTAGG
713 ACTTGCACATCCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACCTAGG
*
2748516 CATACTGAGTTCATTCCCAGTCTAAGCATACAGAGTGTATTCCCAATCTAAG
778 CATACTGAGTTCATTCCCAGTCTAAGCATACAGAGTGCATTCCCAATCTAAG
2748568 ATTGGATCGG
Statistics
Matches: 747, Mismatches: 76, Indels: 12
0.89 0.09 0.01
Matches are distributed among these distances:
925 522 0.70
926 6 0.01
927 1 0.00
928 1 0.00
929 215 0.29
930 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (927 bp):
CGGGGCACCATCACCGGAGCATCACCAGAGAACCTGACCAACGGAATTGGGATTCAGACGATCGA
AGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGCAGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATGCCAAACCGCAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATAAATTTACAAGCCATAAAAAAGGCATTCGCACGCAGAAATATGAAGATGTGCCTAAACCA
ACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCGCCGCC
CGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
CCGAACGGAGGGTTACGACAGTAGGATCGATAGCACACAAAGGGGGACCCGGTCGATCCCCGACT
TGCACATCCCGCCCCTCTGGCCGACTAAGCGCCCACACGCTCGTTTCATGGGTTGACCTAGGCAT
ACTGAGTTCATTCCCAGTCTAAGCATACAGAGTGCATTCCCAATCTAAGCATACGGAGTGCATTC
CCAGTCTAAGATCAGATCGGAGCGAAGGTTGCGGCAACACATGCTGGGCTCGGGCATCTGCTGGT
GTCGCATTTTTCTTCGT
Found at i:2748545 original size:26 final size:26
Alignment explanation
Indices: 2748515--2748567 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2748505 GTTGACCTAG
* *
2748515 GCATACTGAGT-TCATTCCCAGTCTAA
1 GCATACAGAGTGT-ATTCCCAATCTAA
2748541 GCATACAGAGTGTATTCCCAATCTAA
1 GCATACAGAGTGTATTCCCAATCTAA
2748567 G
1 G
2748568 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTGTATTCCCAATCTAA
Found at i:2748624 original size:173 final size:173
Alignment explanation
Indices: 2748420--2748944 Score: 750
Period size: 173 Copynumber: 3.0 Consensus size: 173
2748410 TAGGATCGGT
* *
2748420 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTGACTGAGCG
1 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * *
2748485 CCCGCATGCTCGTTTCATGTGTTGACCTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACAGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * *
2748550 GTGT-ATTCCCAATCTAAGATTGGATCGGACCGAAGGTTGTGGC
131 GT-TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGC
* * *
2748593 AGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGAG
1 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* *
2748658 CCCGCACGCTCGTTTCATGGGTTAACTTAGGCATAC-GAAGTTCATTCCCAATCTAAGCATACGG
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTG-AGTTCATTCCCAGTCTAAGCATACGG
* * **
2748722 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGC
130 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGC
* * * *
2748766 AGCACACAGAGGGGAACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGCG
1 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
2748831 CCCCCACGCTTGTTTCGTGGGTTGACTTAGGCATA-TGGAGTTCATTCCCAGTCTAAGCATACGG
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACT-GAGTTCATTCCCAGTCTAAGCATACGG
*
2748895 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGT
130 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGC
2748939 AGCACA
1 AGCACA
2748945 TGCTGGGCTT
Statistics
Matches: 311, Mismatches: 37, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
172 2 0.01
173 308 0.99
174 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (173 bp):
AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGC
Found at i:2748718 original size:26 final size:26
Alignment explanation
Indices: 2748688--2748740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2748678 GTTAACTTAG
2748688 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
2748714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2748740 G
1 G
2748741 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2748897 original size:26 final size:26
Alignment explanation
Indices: 2748861--2748913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2748851 GTTGACTTAG
*
2748861 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2748887 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2748913 G
1 G
2748914 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2749797 original size:26 final size:26
Alignment explanation
Indices: 2749767--2749819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2749757 GTTGACTTAG
2749767 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2749793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2749819 G
1 G
2749820 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2750706 original size:26 final size:26
Alignment explanation
Indices: 2750670--2750722 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2750660 GTTGACTTAG
2750670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2750696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2750722 G
1 G
2750723 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2752415 original size:878 final size:868
Alignment explanation
Indices: 2748887--2756681 Score: 7712
Period size: 878 Copynumber: 8.9 Consensus size: 868
2748877 CCCAGTCTAA
* * *
2748887 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *** * ** *
2748952 CTTGGGCATCTGCTGGTACCGCATTTTTCTTCGCCGAGGCACCATAACCGAAGCATCGGT-GGAG
66 CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCGCCG-AGCATC-GTCGAAG
* * ** * * *
2749016 AACTTGA-CTAGCGGCATTGGCATTCTGACGATCGGGGGGCCGGGGGGTGTGCTCACATGATGTG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG-GGGGGGGTGTGCGCACATGATGTG
* * * * **
2749080 TGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCATATCATTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2749145 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2749210 GGCGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTG
* ** *
2749275 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTACAGG-TAAAACTCCTTCCGAAAA
386 TGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAA
* * ** *
2749339 AATTTTAAAAAAT-GTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTC
449 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
2749403 TTGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * * *
2749468 CATTGGCACATAGAAATATGAAGATGTGCCTTAACCAACCTACCACCCTATCGATCCATGACTTA
578 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2749533 CGCATCCTGTCTTTCTGGCCGGCGTAGTGCCCGCCCACCTGCCCGCCCGCCCGCTCGTTTCGTCG
643 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCG----CC-GCCCGCCCGCCTGCTCGTTTCGTCG
* * * * * **
2749598 GTTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAAAC-GAGGGCTGT-GGCA
703 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCG-AACTGAGGG-T-TACACA
** * * * * **
2749661 GCAGGATCAACAACA-TGCAGAGGGGGACCCAGCCGATCATCGGCTTGCGCATCCCGCCCCTCTG
765 GCAGGATCGGCCACACT--AGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * *
2749725 GCCGGCTGAGCGCACGCACGCTCATTTCATGGGTTGACTTAG
828 GCCGGCTGAGCTCCCACACG-TCGTTTCTTGGGTTGACTTAG
*
2749767 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GA-C----C-G--
* * * * *
2749832 CAAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT-GTCGCATTTTTCTTTGTCGGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGGT-GCATTTTTCTTCGCCGGG
* * * ** *
2749896 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGAAATTGGGGTTCCAACGATCGGGGGG
104 GCACCATCGCC-GAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * ** *
2749961 GTCGGGGGGTGTTCGTACATGATGTACGATGGGTGCCGGCACTTGGCCCTTATATTGGCCCCCTA
168 G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
* *
2750026 TCCCTCATCAAACCTTGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
231 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2750091 CTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-
296 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
2750155 TTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
361 TTT-GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAG
* * * * * * **
2750220 TTTGGGGCAAAAAATCCTTTCGAAAGAATTTTTAAAAAT-CTCGAACCATAAAAAGTTTCAAAAA
423 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAA
** * *
2750284 TTGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTG
487 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
2750349 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
552 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
2750414 CTATCC-CCCTTTCGATCCACGACTTGCGCATCCCGTCTCTCTGG-TCGGTGTAGTGCCCGCCCG
617 CTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCTCG-CCG
** * *
2750477 CCCGCCCATCTGCTCGTTTCATCGGTTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
679 CCCGCCCGCCTGCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
* * * *** * * * *
2750541 AGATCGAAATGAGGGCTGT-GGTAGCAAGATCGATAG-CACGC-AGAGGGGGACCCGGCCGATCC
743 GGACCGAACTGAGGG-T-TACACAGCAGGATCG---GCCACACTAGAGGGGGACCCGGTCAATCC
* * * * * * * ** * *
2750603 TCGACTTACGCA-CCGCACCCCTCAGGCTGGCTGAGCACCTGCACGCTCATTTCGTGGGTTGACT
803 CCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCTCCCACACG-TCGTTTCTTGGGTTGACT
2750667 TAG
866 TAG
2750670 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GA-C---C--GA-
* * * * * * ** *
2750735 CGAAGGTTACGACAGCACATGCTGGGCTTGGGCATCTGCTGATTCTGCATTTTTCTTCACCGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGG
* * * **
2750800 CACCATCACCGAAGCATCGACGGAGAACCTGACC-AGCGGCATTGGCATTCCGACGATCGGGGGG
105 CACCATCGCCG-AGCATCGTCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG
* * *
2750864 GCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCATA
168 G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
** *
2750929 TCATTCATCAAACCTCGAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTT
231 TCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
2750994 GCCAGTAGCCATTAAAGTATCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
295 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
2751059 CTTTGTGTTTTTAGCTGAA--TTTTGTGCATGCCAACAAAAATACAAGGATAAGGTCTACCAAGT
360 CTTTGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGT
* * * * **
2751122 TTGGGCCCAAAACACCTTTCGAAAAAATTTTAAAAAAT-GTCGAACCGTAAAAAGTTTCAAAAAT
424 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAAT
* * ** * *
2751186 CATGAAAAATAAAAAATGAGTCACCTTGCCATGAAAGTTCACGTGAAGGCTTAAGAGACCATTGT
488 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
2751251 ATGAATTTACAAGCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACC
553 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
2751316 TACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGTGCGCGCCCGCCT
618 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCG-CCGCCC
* * * * *
2751381 GCCCGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCTAGTTTAAGATGGGAC
682 GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAC
* * * * *
2751446 TGAACTGAGGGTTACAGTAGCAGGATCGGCTGCTCA-TAGAGGGGGCCCCGGTCAATCCTCGGCT
747 CGAACTGAGGGTTACA-CAGCAGGATCGGC--CACACTAGAGGGGGACCCGGTCAATCCCCGGCT
* * * *
2751510 TGCGCATCCTGCCCCTCTGGTCGGCTGAGCACCCATACGTTCGTTTCTTGGGTTGACTTAG
809 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCACACG-TCGTTTCTTGGGTTGACTTAG
* * * **
2751571 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGTTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2751636 CTCGGGCATGTGCTCGTGGTG-AATTTTCTTTGCCGGGGCACCATCGCCGCAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCGCCG-AGCATCGTCGAAGA
* * *
2751700 ACCTGACCGACGGCATCGGGGTTCCGGCGATCGGGGTCCGGGGGGAGGGTGTGGGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG---GGGGGG-GGGTGTGCGCACATGATGT
*
2751765 GCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2751830 CACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
2751895 TGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTTGCTTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT
* * * * * *
2751960 ATGCATGCCAACAAAAATATAGGGATCACATCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAA
385 GTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
2752025 AATTTTAAAATATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
449 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
2752090 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGCC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
2752155 ATTGACATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCTTATCGATCCACAGCTTGC
579 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2752220 GCATTCCGTCTCTCTGGCTGGCATAGTGCTCGCTCGCCCGCCCGCCTGCTTGTTTCGTCGGTTGG
644 GCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGC-CGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
* * * * * *
2752285 CTTAGGCATACGGAGTTCATTCCTAGTTTAAGGTTGGAGCGAACTGAAGGTTACGACAGTAGGAT
708 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTAC-ACAGCAGGAT
* * * *
2752350 CGGCCACACGTAGAGGGGGCCCCGGTCAATCCCCGACTTGCACATCCCGCCTCTCTGGCCGGCTG
772 CGGCCACAC-TAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * **
2752415 AACGCCCGTACGCTCGTTT-TGTGGGTTGACTTAG
836 AGCTCCCACACG-TCGTTTCT-TGGGTTGACTTAG
* * * * *
2752449 GCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
2752514 CTC-ATGCATCTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGTCAGAGCATCGTCAAAG
66 CTCGA-GCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCG-CCGAGCATCGTCGAAG
* * * *
2752578 AACCTGGCCGACGGCATCGAGGTTCCGACGATCGGGGGGGCCGGGGGAGGGTGTGGGCACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGG--GGGGG-GGGTGTGCGCACATGAT
** ** *
2752643 GTATGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATATCTCATCAAACCTCGAGAATT
189 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*** *
2752708 CATTGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT-TCG
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* *
2752772 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTT
318 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTT
* * * * *
2752837 TTTGTGCAAGCCAACAAAAATCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATACGGAA
382 TTTGTGCATGCCAACAAAAATAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
2752902 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
447 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
2752967 CTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * *
2753032 GCATTGGTGCACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGAACCACGGCTT
577 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * * * *
2753097 GCGCATCCCGTCTCCCTAG-TCGGTGTAGTG--C-CAACTCGCACGCCCGCTCGTTTCGTCAGTT
642 GCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCTCGCCGCCCGCCCGCCTGCTCGTTTCGTCGGTT
** * * * * * *
2753158 GGCTTAGGCATACATAGTTCATTCCCAATCTAAGATCAGACCAGATC-GAGGGTTGCAGCAACAG
706 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC-GAACTGAGGGTTACA-CAGCAG
* * * * *
2753222 GATCGG-CAGCA-TGCAGAGGGGTACTCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCT
769 GATCGGCCA-CACT--AGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
2753285 AGCTGAGTGCTCGCACAC-TCGTTTCGTGTGTTGACTTAG
831 GGCTGA--GCTCCCACACGTCGTTTCTTGGGTTGACTTAG
* * * *
2753324 GCAGACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** * * *
2753389 CTCGAAAATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCAGACA
66 CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCG-CCGAGCATCGTC-G--A
* * * *
2753454 CCAGACAAACTGACCGACGGCATTGGGGTTCC-AGTGATAGGGGGGCTGGGGGGTGTGCGCACAT
127 --AG--AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGG-GGGGGGGTGTGCGCACAT
* *
2753518 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGA
186 GATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
2753583 ACTCACAACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAGGT
251 ACT--C-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* **
2753648 GTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGA
313 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
* ** *
2753713 ATTTTCTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAGGTTTGCAGCCAAAACCCCT
378 ATTTT-TTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * **
2753778 TCCGAAAAAGTTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
441 TCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
*
2753843 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATA
506 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
2753908 AAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCTACCTACTACCCTATCGATCCA
571 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
2753973 CGGCTTGCGCATCCCGCCTCTCTGGCAGACGTAGTG-T--CCGCCCGCCCACCCGCTCGTTTCGT
636 CGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCTCGCCGCCCGCCCGCCTGCTCGTTTCGT
* * * * * *
2754035 TGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCT-A--GTTGCGGC
701 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAA-CTGAGGGTTAC-AC
** ** * * *
2754097 AGCAGGATCGGTAGAACAC-AGAGGGGGACCCGACCAATCCCCGGCTTGCACATCCTGCCCTTCT
764 AGCAGGATCGG--CCACACTAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
2754161 GGCCGGCTGAGCGCCCGCACAC-TCGTTTCGTGGGTTGACTTAG
827 GGCCGGCTGAGC-TCC-CACACGTCGTTTCTTGGGTTGACTTAG
* *
2754204 GTATACGGATTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CC-G-----GA-C---C--G--
* * *** * *
2754269 CAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGG
* * *
2754334 TACCAT---C--G--TCG--G-AGAACCTGACCGACGGCATTGGTGTTTCGACGATCGGGGGGGC
105 CACCATCGCCGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-
* * * * ** *
2754389 GGGGGGTGTGCGCACATGATGTACGGTGGGTGCTGGTTCTTCACCCTTTTATTGGCCCCCTATCC
169 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
*
2754454 CTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCA
234 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
2754519 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACCAAATCTTGTACACTTC
299 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * * *
2754584 GAGTGTTTCA-CTGAATGTTTTGTGCATGCCAAAAAAAATACGAGGATCACGTCTACGAAGTTTG
364 GAGT-TTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGTTTG
* * * *
2754648 GGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGGTTTGATAATCGA-
427 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATC-AT
*
2754712 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATG
491 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
2754777 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGACGTGCCTAAACCCACCTAC
556 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * ** ** **
2754842 CACCCTATTGATCCACGGCTTGCGTATCCCGTCTCTCTGGTTGGCTTAG-GCATACGGAGTTCAT
621 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGC-T-CGCCGCCCGC
* * ** * * * * *
2754906 TC-CCAG-TC--TAAGATC-G--GAC-CAGAC-TGA-GG-GTTC---CAATAG-C-GAGATCGGT
684 CCGCCTGCTCGTTTCG-TCGGTTGGCTTAGGCAT-ACGGAGTTCATTC-CTAGTCTAAGATCGG-
* ** * * * ** ** *
2754955 A--GCACGTAGAGGGGGAC-CCG-ACCGATC--CC-CGACTTGCA---CAACCC-GTCGCTCGTG
745 ACCGAAC-T-GAGGGTTACACAGCA-GGATCGGCCAC-ACTAG-AGGGGGACCCGGTCAATC--C
* * ** * * ** * ** **
2755009 CCGG-TTGAGC-GCCC-CCACGCTCGTTTCATGGGTTGA-CTTTGGCATACGAAG-TTCATTCCC
803 CCGGCTTGCGCATCCCGCC-C-CTC-TGGC--CGGCTGAGC--TCCCACACGTCGTTTC-TT-GG
* *
2755069 ATT--C-TAA
859 GTTGACTTAG
* * * * *
2755076 GCATACGTAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * * *
2755141 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCGTCGAAGA
* * * * * *
2755206 ACCTGACCGACGGCATTGGGGTTTCTATGATCGGGGTGGCCGGGGGGTGTGTGCACATGATGTAC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GG-GGGGGGGTGTGCGCACATGATGTGC
* * **
2755271 GATTGATGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2755336 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAACTG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2755401 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATCTGAATTGTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTGT
* *
2755466 GAAT---AAC-------AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAT
387 GCATGCCAACAAAAATAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** *
2755521 TTTAAAAAATCCCGAACCGTAACAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
2755586 CATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * ** * *
2755651 GGCACGTAGAAATATGAAGATGTGCCTAAGCTAACCTACCACCCTATAGATCCACGGCTTGCACA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
2755716 TCCCGTCTCT-TAGGCCGGCATAGTGCCCGCCTGCCCGCCCGCCTGCTCGTTTCATCGATTGGCT
647 TCCCGTCTCTCT-GGCTGGCGTAGTGCTCGCC-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCT
** * *
2755780 TAGGCATACGGAGTTCATT-CTCAGTCTAAGATCAAACCGAACTGAGGGTTGCGGCAGCAGGATC
710 TAGGCATACGGAGTTCATTCCT-AGTCTAAGATCGGACCGAACTGAGGGTTAC-ACAGCAGGATC
* * ** * * * * * **
2755844 GGCAGTATAC-AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCC-ACGCTCTAGCCAACTG
773 GGC--CACACTAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
2755907 AGC-GCCAGCACGCTCGTTT-TGTGGGTTGACTTAG
836 AGCTCCCA-CACG-TCGTTTCT-TGGGTTGACTTAG
* * * * * * *
2755941 GCATACGGAGTTTATTTCTAGTCTAAGATCGGACCAGACTGAGGATTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** ** * *
2756006 CTCGAGCATGTTCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCATCGAAGA
66 CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCG-CCGAGCATCGTCGAAGA
* * * * ** *
2756071 ACCTGACCGTCGGTATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTACATACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG--GGGGGGTGTGCGCACATGATGTGC
*
2756136 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2756201 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCAGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2756266 AGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTGTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGTG
** * * * * * *
2756331 CATGCTGACAAAAATGCAAGGATCACGTCT---AGGTTTAGGTCCAAAAGTCCTTTCGAAAAAAT
388 CATGCCAACAAAAAT-AAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
2756393 TTTAAAAAATCCTGAACCGTAAAAAGGTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
2756458 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * *
2756523 GGCACATAGAAATATGATGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACGCA
582 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * * * *
2756588 TCCTGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCACCTGCAC-GCTCATTTCATGGGTTGACT
647 TCCCGTCTCTCTGGCTGGCGTAGTGCTCG-CCGCCCGCCCGC-CTGCTCGTTTCGTCGGTTGGCT
2756652 TAGGCATACGGAGTTCATTCCTAGTCTAAG
710 TAGGCATACGGAGTTCATTCCTAGTCTAAG
2756682 CATATAGAGT
Statistics
Matches: 5837, Mismatches: 820, Indels: 524
0.81 0.11 0.07
Matches are distributed among these distances:
846 63 0.01
847 3 0.00
848 244 0.04
849 6 0.00
850 3 0.00
851 2 0.00
852 3 0.00
854 4 0.00
855 5 0.00
856 8 0.00
857 44 0.01
858 191 0.03
859 11 0.00
860 8 0.00
861 10 0.00
862 16 0.00
863 6 0.00
864 17 0.00
865 335 0.06
866 9 0.00
867 11 0.00
868 9 0.00
869 2 0.00
870 7 0.00
871 13 0.00
872 310 0.05
873 18 0.00
874 79 0.01
875 416 0.07
876 102 0.02
877 14 0.00
878 578 0.10
879 313 0.05
880 368 0.06
881 146 0.03
882 335 0.06
883 2 0.00
884 261 0.04
885 119 0.02
886 7 0.00
887 5 0.00
888 113 0.02
889 1 0.00
890 7 0.00
891 4 0.00
894 1 0.00
895 1 0.00
896 4 0.00
897 3 0.00
898 5 0.00
899 2 0.00
900 11 0.00
901 439 0.08
902 11 0.00
903 398 0.07
904 112 0.02
905 7 0.00
906 161 0.03
907 452 0.08
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGGTGCATTTTTCTTCGCCGGGGCACCATCGCCGAGCATCGTCGAAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGTGCAT
GCCAACAAAAATAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCTGGCGTAGTGCTCGCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTACACAGCAGGATCGGCCACAC
TAGAGGGGGACCCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCACA
CGTCGTTTCTTGGGTTGACTTAG
Found at i:2755080 original size:26 final size:26
Alignment explanation
Indices: 2755050--2755102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2755040 GTTGACTTTG
*
2755050 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2755076 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2755102 G
1 G
2755103 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2756685 original size:26 final size:26
Alignment explanation
Indices: 2756655--2756705 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2756645 GTTGACTTAG
* *
2756655 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2756681 GCATATAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
2756706 TGATCGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2758783 original size:905 final size:900
Alignment explanation
Indices: 2757020--2758845 Score: 2817
Period size: 905 Copynumber: 2.0 Consensus size: 900
2757010 GAACACGTCT
* * * * *
2757020 ATCAGACCAGATCAAGGGTTGTGGCAGCAGGATCCGCAGCACGCAGAGAGGGACCCGGCCGATCC
1 ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCCGCAGCACACAGAGAGGGACCCAGCCGATCC
** * * *
2757085 CCGGCTTGTGCATCCAGCCCCTCTGGTCGACTAAGCGCACGCACGCTCGTTTCGTGGGTTGACTT
66 CCGGCTTGCACATCCAGCCCCTCTGGCCGACTAAGCGCACGCACGCTCGTTTCGTGGGTTAAATT
* * * * * *
2757150 AGGCATACGGAGTTCATTCCCAGTCTAAGCATCCGAAGTTCATTCCAGTCTAAGATCGGACCGGA
131 AGGCATACGAAGTTCATTCCCAATCTAACCATCAGAAGTTCATTCCAGTCTAAGATCGAACCAGA
* ** *
2757215 CCGAGGGTTGCGGCACCACATGCTGGGCTTGGGCATATGCTGGTGATGCATTTTTCTGCACCAGG
196 CCGAGGGTTACGGCACCACATGCTGGGCTCAGGCATATGCTGGTGACGCATTTTTCTGCACCAGG
* * * *
2757280 GCACCATACTGGAGCATCGCCAAAGAACCTGACCGACGGCATTGGGGTTTCGACGATAGGGGGAG
261 GCACCATACAGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTTCGACAATAGGGGGAG
2757345 CCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
326 CCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
2757410 TCCCTCATCAAACCTCAAAAACTCACGCCCCCTTAAAGAGCATTTGAGAATTTATCGGTTTGCTG
391 TCCCCCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGAATTTATCGGTTTGCTG
2757475 CTAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACT
456 CTAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACT
2757540 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATATAAGGATCAAATCTAACAAGTT
521 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATATAAGGATCAAATCTAACAAGTT
2757605 TGGGGCCAAAAAACCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
586 TGGGGCCAAAAAACCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
2757670 GGAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
651 GGAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
2757735 AATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
716 AATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * *
2757800 CACCCTATCGATCCTCGGCTTGCGCATCCTGTCTCTCTGGCCGGGGTAGTTCCCGCCCGATTGCC
781 CACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGACTGCC
*
2757865 GCCCGCTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
846 GCCCGCTTCGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
2757920 ATCAGACCGGACCGAGGGTTGTGGCAGTAGGAT-CGATAGCACACAGAG-GTTGACCCAGTCGAT
1 ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCCG-CAGCACACAGAGAG-GGACCCAGCCGAT
* * * * *
2757983 CCCCGGCTTGCACATCCCGCTCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAA
64 CCCCGGCTTGCACATCCAGCCCCTCTGGCCGACTAAGCGCACGCACGCTCGTTTCGTGGGTTAAA
* *
2758048 TTGGGCATACGAAGTTCATTCCCAATCTAACCATACAG-AGTTCATTCCCAGTCTAAGATTGAAC
129 TTAGGCATACGAAGTTCATTCCCAATCTAACCAT-CAGAAGTTCATT-CCAGTCTAAGATCGAAC
* * * * **
2758112 CAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT
192 CAGACCGAGGGTTACGGCACCACATGCTGGGCTCAGGCATATGCTGGTGACGCATTTTTCTGCAC
* * ** *
2758177 C-GAGGCACCATCGCCAGAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGG-TTCTGACAAT
257 CAG-GGCACCAT--ACAGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTTC-GACAAT
* * *
2758240 CGGGGG-GCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
318 AGGGGGAGCCGAGGGGG-TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
** *
2758304 GGCTGCCTATCCCCCATCAAACCTCAAGAAA-TCACACCCCCTTAAAGAGCATTTGAGATTTTA-
382 GGCCCCCTATCCCCCATCAAACCTCAA-AAACTCACACCCCCTTAAAGAGCATTTGAGAATTTAT
* *
2758367 CAGGTTTGCTGCCT-GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAA
446 C-GGTTTGCTG-CTAGTAGCCATTAAAATGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAA
2758431 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATATAAGGATCA
508 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATATAAGGATCA
2758496 AATCTAACAAGTTTGGGGCCAAAAAACCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
573 AATCTAACAAGTTTGGGGCCAAAAAACC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
2758561 GTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAA
637 GTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAA
2758626 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGC
702 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGC
*
2758691 CTAAACCCACCTACCACCCTATTGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
767 CTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
2758756 CTCACCCGCCTGCCCGCCCGC-TCGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGT
832 CCCACCCGACTG-CCGCCCGCTTCGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGT
*
2758820 CTAGG
896 CTAAG
* *
2758825 ATCGGAACGGACCGAGGGTTG
1 ATCAGACCGGACCGAGGGTTG
2758846 CGATAGCACA
Statistics
Matches: 841, Mismatches: 70, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
899 3 0.00
900 143 0.17
901 80 0.10
902 13 0.02
903 181 0.22
904 115 0.14
905 298 0.35
906 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCCGCAGCACACAGAGAGGGACCCAGCCGATCC
CCGGCTTGCACATCCAGCCCCTCTGGCCGACTAAGCGCACGCACGCTCGTTTCGTGGGTTAAATT
AGGCATACGAAGTTCATTCCCAATCTAACCATCAGAAGTTCATTCCAGTCTAAGATCGAACCAGA
CCGAGGGTTACGGCACCACATGCTGGGCTCAGGCATATGCTGGTGACGCATTTTTCTGCACCAGG
GCACCATACAGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTTCGACAATAGGGGGAG
CCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCCCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGAATTTATCGGTTTGCTG
CTAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATATAAGGATCAAATCTAACAAGTT
TGGGGCCAAAAAACCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
GGAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGACTGCC
GCCCGCTTCGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:2759713 original size:26 final size:26
Alignment explanation
Indices: 2759674--2759726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2759664 GTTAACTTAG
* *
2759674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
2759700 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
2759726 G
1 G
2759727 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:2760595 original size:26 final size:26
Alignment explanation
Indices: 2760564--2760616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2760554 GTTGACTTTG
2760564 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2760590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2760616 G
1 G
2760617 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2761884 original size:26 final size:26
Alignment explanation
Indices: 2761855--2761904 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2761845 GTTGACTTAG
2761855 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
2761881 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
2761905 ATGATCGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:2762547 original size:26 final size:26
Alignment explanation
Indices: 2762510--2762562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2762500 GTTGACTTAG
2762510 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2762536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2762562 G
1 G
2762563 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2764320 original size:26 final size:26
Alignment explanation
Indices: 2764284--2764385 Score: 150
Period size: 26 Copynumber: 3.9 Consensus size: 26
2764274 GACTTAGGCA
2764284 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
2764310 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
* * * *
2764336 TACGAAGTTCATTCTCAGTCTAATCA
1 TACGGAGTTCATTCCCAGTCTAAGCG
* *
2764362 AATGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2764386 ATCGGATCGG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:2765272 original size:26 final size:26
Alignment explanation
Indices: 2765236--2765286 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2765226 TTGACTTAGG
2765236 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
2765262 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
2765287 GATCGAACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:2766153 original size:26 final size:26
Alignment explanation
Indices: 2766122--2766174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2766112 GTTGACTTAG
2766122 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2766148 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2766174 G
1 G
2766175 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2767057 original size:26 final size:26
Alignment explanation
Indices: 2767028--2767080 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2767018 GTTGACTTAG
2767028 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2767054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2767080 G
1 G
2767081 TTCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2767324 original size:906 final size:900
Alignment explanation
Indices: 2762230--2772826 Score: 12620
Period size: 906 Copynumber: 11.8 Consensus size: 900
2762220 AAATGGTCAC
* * *
2762230 ATATGATGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * * * *
2762295 TGGCCGGTGTAGTGCCCGCTCGCTCGTCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCGTACGGA
66 TGGCCGGCGTAGTGCCCGCCCGCCCG-CCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * **
2762360 GTTCATTCCTAGTCTAAGATCTGACCAGACCGAAGGTTACGGCAGCAGGATTGGCAACACATAGA
128 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* *** * * *
2762425 GAGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCT
193 GGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCT
* *
2762490 TATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
258 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * ** **
2762555 AGTCTAAGATCAGACCAGACCTAGGGTGGCGATAGCACATGCTCAGCTCGGGCATGTGCTGGTGC
323 AGTCTAAGATCAGACCA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
2762620 CGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGGCAGCATTA
387 CGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** * *
2762684 GGGTTTCGGTGATC-GGGGGGTCGGCGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
451 GGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
2762748 TGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCAT
515 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
2762813 TTGAGATTTTACAGGTTTGCCGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
580 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAA
* * *
2762878 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAAT
644 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * *
2762943 A-TAGTGATCACGTCTACCAAGTTTGGGCCCCAAACTCCTTCCGAAAAAATTTT-AAAAATTCCC
709 ACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATT-CT
* ** * * * *
2763006 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAACCTCCAC
772 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
2763071 GTGAAGCCTTCAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCACTGGCATG-CAGAA
837 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
*
2763134 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * * *
2763199 TGGCCGACGTAGTCCTGGCCCGCCTGCCCGCC-CGCTCATTTTGTCGGTTGGCTTAGGCATACGG
66 TGGCCGGCGTAG---T-GCCCGCCCGCCCGCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * *** * * *
2763263 AGTTCATTCCTAGTCTAAGATCGAAGTGGACCGAGGGTTGTGGCA-CGGGATCGGTAGCACGCAG
127 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * * * * *
2763327 AGGGGGACCCGATCGATCCCCGACTTGCACTTCCTGCCCCTCTGGCCAGCTGAGCACCCGCAAGC
192 AGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
* * *
2763392 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-TA---AG---A-T--
257 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
2763442 C-G-----GATCAGACC-A---AGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGT
322 CAGTCTAAGATCAGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * *
2763497 CATATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGACGACATTG
387 CGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
**
2763561 GGGTTCCGACGATCGGGGGGGCCACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
451 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
2763626 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
516 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
2763691 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
581 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAA
* * * *
2763756 TGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTG-ACTTTTTTATGCATGCCAACAAAAATA
645 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* ** * **
2763820 CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATCC-AAAAATTTTTTTTAAAA-TCTTG
710 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA-ATTTTAAAAAATTC-TG
*** *
2763883 AACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
773 AACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
2763948 TGAAGGATTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATG-CAGAA
838 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
* * *
2764010 ATATGAAGATGTG-C----CCCACCTACCACCCTATCGATCCACTGCTTACGCATCCCATCCCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * *
2764070 TGGCCGACGTAGTGCCCGCCCGCCCGCCTG--CTCATTTCGTCGGTTGGCTTAGGCATACGAAGT
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * *
2764133 TCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCATGATCGGCAACACGCAGAGG
130 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * * * * * **
2764198 GCGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCACTAGCCGGTTGAGTGCCCGCATGCTCA
195 GGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTG
*
2764263 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAG
260 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * **
2764328 TCTAAGCGTACGAAGTTCATTCTCAGTCTAATCAAATGGAGTTCATTCCCAGTCTAAGATCGGAT
325 TCTAAG-AT-C--AG---A----C---C-AA-CCGA-GG-GTT--GTGGCAG-C----A-C--AT
* * *
2764393 CGGACAGAGGGGTGAGGCCGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGT
362 --G-C-------T--GG--GCT-----------CGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * *
2764458 TGGGGCACCATCATCGGAGCTTCGCCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATC-G
402 TGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
*
2764522 GGGGGCCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGG
467 GGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
2764587 CCCCTATCCCACATCAAACCTTGAGATCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGT
531 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
2764652 TTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTT
596 TTGCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
2764717 ATACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTA
660 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
2764782 TCAAGTTTGGGGCCAAAAATCCTTT-CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
725 CCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATTCTGAACCGTAAAAAGTTTT
* * * *
2764846 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCATGTGAAGGCTTACGGGAC
789 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
2764911 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CACAGAA
854 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-CAGAA
* * * * **
2764957 ATATGAAGATGTGCCTAAACCCACCAACCACCCTGTCGATCCGCGGCTTGCGCATCCCACCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* *
2765022 TGGTCGGCGTAGTGCCCGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGA
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCC--CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
2765087 GTTCATCCCCAGCCTAAGATCGGACCAAACCGA--GTTACGGCAGCAAGATCGGTAGCACACAGA
128 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
** * * * * * *
2765150 GGGGGACCTAG-CTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAACGCCCGCACG-
193 GGGGGACCCGGTC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
* *
2765213 TTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTC
257 TT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
2765278 CCAGTCTAAGATC-GAACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
321 CCAGTCTAAGATCAG-ACCA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * * *
2765342 TGCCAAATTTTTCTTCG-TCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCAGTGGCA
384 TGCCGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * * * * *
2765406 TTAGGGTTCCGACGAT-TGAGGGG-CTGGGGGGTGGGCGCACATGATGTG-GATGGCTGCTGGTG
448 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
2765468 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
513 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2765533 ATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
578 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTC
* *
2765598 AAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
642 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
** *
2765663 ATACAAGGATCACGTCTACCCTGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCT
707 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCT
* ** * * *
2765726 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGTAACTTCA
772 -GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
2765791 CGTGAAGTCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGGCATTGGCATG-CAAAA
836 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
*
2765855 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* *
2765920 TTGCCGGCGTAGT----GCCTG--C-CCG--CTCGTTTCGTCGGTTGGCTTAGGCATA-GGAGTT
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * * *
2765975 CATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAAGATCGGGAGAATGCAGAGGG
131 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * * *
2766040 GGACCCGATTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGG-TCGACCGCCCGCACACTCG
196 GGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGTACGCTTG
* * * * * *
2766104 GTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAA
260 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * * *
2766169 TCTAAGATCGGATCAGAATGAGGGTT-TCGGCAGCACATGCTGGGTTCGAGCATGGGCTGGTGCT
325 TCTAAGATCAGACCA-ACCGAGGGTTGT-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * *
2766233 GTATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACAGGTGGCATTGG
388 GCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
2766297 GGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
452 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
2766361 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
517 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
2766426 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCTTAAAAT-GGGACACTTTTTTCAAAT
582 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAAAT
* *
2766490 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAT
646 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** *
2766555 AAGGATCACGTCTACCAAGTTTCAGGCCAAAACTCTTTCCGAAAAAATTTAAAAAAATTCTGAAC
711 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCTGAAC
2766620 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
776 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
2766685 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCA-AA
841 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
* * *
2766744 ATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * * *
2766809 TGGCCGGTGTAATGCCCGCCCGCCCGCCCACCCACCCACTTGTTTCATCGGTTGGCTTAGGCATA
66 TGGCCGGCGTAGTGCCCGCCCGCCCG-----CC-GCC-CTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * *
2766874 CGGAGTTCATTCTTAGTCTAAGATTGGA-CAGGACCGAAGGTTTCGGTAGCAGGATCGACAGCAC
124 CGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * *
2766938 GCAGAGGGGGACACGGTCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGTCCGT
188 GCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT
** *
2767003 ATACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
253 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
2767068 TTCCCAGTCTAAGTTCAGACCGAACCGAGGGTTGTGGCAGTACATGTTGGGCTCGGGCCTGTGCT
318 TTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * ** * * * * *
2767133 GGTGCTGCAATTTTCTTTGCTGGGGCACCATCGTCGGAGTGTCACCGGAGAACTTGGCTGACGGC
382 GGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
** * * *
2767198 ATTGGGGTTCCGGTGATCTGTGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
447 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
2767262 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCTCGCTTAAAGAG
512 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
2767327 CATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACATTTTTT
577 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGA-AATGGGGACACTTTTT
*
2767391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAA
640 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
2767456 AAATACAAGGATCACATCTAGCAAGTTTGGGGCC-AAACTCCTTCCGAAAAAA-TTTAAAAAAAT
705 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATT
* * *
2767519 CTTGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
770 C-TGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
2767584 CAGGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCTTG-CAG
834 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAG
2767648 AA
899 AA
* **
2767650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCTTGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * *
2767715 TGGCCGGCGTAGTGCCCGCCCG--C-CCG--CTCGTTTCGACAGTTGGCTTAGGCATATGGAGTT
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
2767775 CATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATGGGCAGCATGTAGAGGG
131 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * *
2767840 GAACCCGGCCGATCCACGACTTGTGCATCCCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCTCGT
196 GGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGT
* * *
2767905 TTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGT
261 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
2767970 CTATGATC-GAACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCA
326 CTAAGATCAG-ACCA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * ** * *
2768034 CATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
389 CATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * * * *
2768099 TTCTGGCGATCGGGGGGGCC-GAGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGC
454 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
2768163 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGCATTTGA
519 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2768228 GATTTTACAGG-TTGGTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
584 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAAATGG
* * *
2768292 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATATAA
648 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * ** *
2768357 GGATCATGTCTACCAAGTTTGGGGCGAAAAATCTTTTTGAAAAAA-TTTAAAAAATTCTGAACCA
713 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCTGAACCG
* **
2768421 TAAAATGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
778 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * **
2768486 GCTTAAGGGACCATTGTATGAATTGACATGGCATAAAAATCACATTGGCATGCC-GAA
843 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
** ** * * * *
2768543 ATATGAAGATGAACCTAAACCCACAAACCACCCTATCGGTCCACGGCTTTCGCATACGGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * * *
2768608 TGGCCGGTGTAGTGCTCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATATGGA
66 TGGCCGGCGTAGTGCCCGCCCGCCCG-CCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** * ** *
2768673 GTTCATTCTCAGTCTAAGATCGAACGAGATTGAGGGTTGCGACAGCAGGATCAACAGCATGCAGA
128 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* ** * * * * *
2768738 GGGGTACCTAGTAGATCCCCGAATTGTGCATCCCGCCCCTCTGGCCGACTGAGCGTCCGTACGCT
193 GGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCT
* *
2768803 TGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC-T-C--AG---------
258 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
2768855 A--C------C--A--AACTGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCC
323 AGTCTAAGATCAGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
2768908 GCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGTGGCATTGG
388 GCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * * *
2768972 GGTTCCGATGATCGGGGGGGCCAGGTGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTATTTG
452 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
2769037 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
517 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
2769102 GAGATTTTACAGGTTTGCTGCCAATAGCGATTAAAGTGTTTGAAATGCGGACACTTTTTTGAAAT
582 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAAAT
* * *
2769167 GGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATTCCAACAAAAATAC
646 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
2769232 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATAT-TGAA
711 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT-TCTGAA
* * *
2769296 CCGTAAAAAGTTTCGATAATCGTGAACAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
775 CCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
2769361 AAGGCTTAAGGGACTATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATG-CAGAA
840 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
* *
2769421 ATATGAATATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* *
2769486 TGGCTGGCATAGT-----CCCG--C-CCG--CTCGTTTCGAT-GGTTGGCTTAGGCATACGGAGT
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGT
* * * * * *
2769540 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAACAGGATCGGTAGCACACAGAGG
130 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * ** * * *
2769605 GGGACTCGATCGATCCAGGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTATGCTCG
195 GGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTG
* * *
2769670 TTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG-AT-C-G-G---A----C--
260 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
2769722 -C--AGAT-------A--GAGGGTTGCGGCAGGACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
325 TCTAAGATCAGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
2769775 TTTTTTCTTTGCTAGGGCACCATCGTCGGAGCATCGTCAGAGAACCT-AGCCGGCGGCATTGGGG
390 ATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-CCGGCGGCATTGGGG
* * * *
2769839 TTCCGGCGATCTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGC
454 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
2769904 CTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCTCGCTTAAAGAGCATTTGA
519 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
2769969 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-CTGGAATGGGGACACTTTTTTCAAATGGT
584 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGAAATGGGGACACTTTTTTCAAATGGT
2770033 CACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTATTTTTGTGCATGCCAACAAAAATACAA
649 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAA
2770097 GGATCACGCTCTACCAAGTTTGGGGCC-AAACTCTTTCCGAAAAAATTTTAAAAAATCTCT-AAC
713 GGATCACG-TCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT-TCTGAAC
* *
2770160 CGCAAAAAG--TT-----TC------AA-A-AAAACGAGTCGTCTTGCCATAAAACTTCACGTGA
776 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
2770210 AGGCTT-AGCGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATG-CAGAA
841 AGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
* * *
2770269 ATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTACGCATCCTGACTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * *
2770334 TGGCCGACGTAGTGCCCGCCCG--C-CCG--CTCGTTTCGACAGTTGGCTTAGGCATATGGAGTT
66 TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
2770394 CATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATTGGCAGCATGTAGAGGG
131 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
** * * * * *
2770459 GGACCCGACCGATCCACGACTTACGCATCCCG-CTCTCTGGTCGGCTGAGCGCCCGCACGCTTGT
196 GGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGT
*
2770523 TTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
261 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
2770588 CTAAGCTCAGACCAAACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGT
326 CTAAGATCAGACC-AACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
2770653 ATTTTTCTTCGCCGGGGCACCATCGTCCGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGT
390 ATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* *
2770718 TCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCC
455 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
2770783 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
520 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
2770848 ATTTTACAGGTTTTCTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACACCTTTTTCAAATGGT
585 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TTGAAATGGGGACACTTTTTTCAAATGGT
* * *
2770913 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAG
649 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
2770978 GATCACGTCCACCAAGTTTGGGCCCAAAAATCTTTCTGAAAAAATTTTAAAAAATTCCGAACCAT
714 GATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCTGAACCGT
* * *
2771043 AAAATGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTTCACGTGAAGG
779 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
2771108 CTTAAGGAACGATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCACG-CTGAA
844 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
* * * *
2771164 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATACTGTCTCAC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * * * * * ** *
2771229 TGGCCGGTGTAGTACCCGCCTGCCCGCCCGCTCGCTCATTTCGTCAGATGGCTTTTGCATACGAA
66 TGGCCGGCGTAGTGCCCGCCCGCCCG-CCGC-C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * * * * * *
2771294 GTTCATTCTCAGTCTAAGATTGGACGGGATCGAGGGTTGTGGTAGCAGGATCGACAGCATGCAAA
128 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * *
2771359 GGGGTACTCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGTCCGTACGCT
193 GGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCT
* * * * *
2771424 TGTTTCATGGGTGGACTTAGGCATACGAAATTCATTCCCAGTCTAAACATACGGAGTTCATTCCC
258 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
2771489 AATCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
323 AGTCTAAGATCAGACCA-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * *
2771554 CGCATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGCCAGAGCACCTGGCCGACGGCATTGT
387 CGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* *
2771619 GGTTCCGACGATCTGGGGGCCCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
452 GGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
2771684 GGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACGCTCCCTTAAAGAGCATT
516 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
2771749 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGTCGGAATGGGGACACTTTTTTCAAA
581 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTTGAAATGGGGACACTTTTTTCAAA
* *
2771814 TGGTTACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATA
645 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* ** * ** * * * * *
2771879 CAAGGATCACGTCTACCAAGTTTGGCGTGAAAACTCCTTCAAAAAAAAGTTTAAAACATCCCGAG
710 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCTGAA
** *
2771944 CCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
775 CCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
2772009 AAGGCTTAAGGGACCATTGTACGAATTTACAAAGCTATAAAAATGGCATTGGCA--CATAGAA
840 AAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCATGC-CAGAA
* * ** ** *
2772070 ATAAGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATAGCTTGTGCATCCCGTTTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* *
2772135 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
66 TGGCCGGCGTAGTGCCCGCCCGCCCG-CCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * *
2772200 GTTCATTCCCAGTCTAAGATCAGACCAAATTGA--GTTGCGGTAGCAGGATCGACAGCACGCAGA
128 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
** * * *
2772263 GGGGGACCC-ACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGTCCGTACGCT
193 GGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCT
* * * *
2772327 TGTTTCGTGGGTGGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCC
258 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * * * * *
2772392 AGTCTAAGATCGGACTGGACTGAAGAGTTGCGGCAGCACATTCTAGGCTCGGGCATGTGCTGGTG
323 AGTCTAAGATCAGAC-CAACCG-AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
2772457 CCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTA
386 CCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** * * *
2772522 GGGTTTCGGTGATCGGGGGGGCCGGGGGGCATGTGCGCACATGATGTGTGATGGGTGCAGGTACT
451 GGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2772587 TGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACCCCCCCTCAAAGAGCAT
515 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
2772651 TTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAA
580 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAA
* *
2772715 ATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGC-CAATTTTTTTTGTGCATG-CAAAAAAA
644 ATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAA
* *
2772778 ATATAAGGATCACGTCTACAAAGTTTGGGGCCAAAACCTCTTT-CGAAAA
707 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCTTTCCGAAAA
2772827 GCAATTTAAA
Statistics
Matches: 8391, Mismatches: 1031, Indels: 544
0.84 0.10 0.05
Matches are distributed among these distances:
847 2 0.00
848 158 0.02
849 1 0.00
850 2 0.00
852 69 0.01
853 123 0.01
854 1 0.00
855 1 0.00
856 3 0.00
859 1 0.00
861 1 0.00
862 3 0.00
863 129 0.02
864 20 0.00
865 424 0.05
866 4 0.00
867 80 0.01
868 108 0.01
869 3 0.00
870 1 0.00
871 55 0.01
873 4 0.00
874 2 0.00
875 123 0.01
876 303 0.04
877 450 0.05
878 445 0.05
879 20 0.00
880 130 0.02
881 4 0.00
882 11 0.00
883 1 0.00
884 1 0.00
885 29 0.00
886 30 0.00
887 260 0.03
888 132 0.02
889 343 0.04
890 9 0.00
891 4 0.00
892 1 0.00
893 324 0.04
894 456 0.05
895 164 0.02
896 3 0.00
897 13 0.00
898 217 0.03
899 220 0.03
900 22 0.00
901 187 0.02
902 172 0.02
903 452 0.05
904 543 0.06
905 396 0.05
906 800 0.10
907 110 0.01
908 10 0.00
909 1 0.00
910 2 0.00
911 3 0.00
913 5 0.00
914 1 0.00
915 2 0.00
917 1 0.00
918 1 0.00
919 1 0.00
921 2 0.00
923 1 0.00
924 2 0.00
925 1 0.00
927 2 0.00
929 1 0.00
930 1 0.00
931 1 0.00
933 2 0.00
934 1 0.00
935 6 0.00
937 3 0.00
938 2 0.00
939 3 0.00
940 2 0.00
943 1 0.00
945 9 0.00
946 280 0.03
947 195 0.02
948 9 0.00
949 1 0.00
952 68 0.01
953 3 0.00
954 141 0.02
956 57 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATTCTGAACCGTAA
AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAGAA
Found at i:2767958 original size:26 final size:26
Alignment explanation
Indices: 2767922--2767972 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2767912 GTTGACTTAG
* *
2767922 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2767948 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
2767973 TGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2770576 original size:26 final size:26
Alignment explanation
Indices: 2770540--2770593 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
2770530 GTTGACTTAG
2770540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2770566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2770592 GC
1 GC
2770594 TCAGACCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2771475 original size:26 final size:26
Alignment explanation
Indices: 2771445--2771495 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2771435 TGGACTTAGG
*
2771445 CATACGAAATTCATTCCCAGTCTAAA
1 CATACGAAATTCATTCCCAATCTAAA
* *
2771471 CATACGGAGTTCATTCCCAATCTAA
1 CATACGAAATTCATTCCCAATCTAA
2771496 GATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.27
Consensus pattern (26 bp):
CATACGAAATTCATTCCCAATCTAAA
Found at i:2771934 original size:905 final size:899
Alignment explanation
Indices: 2770176--2772813 Score: 3656
Period size: 904 Copynumber: 2.9 Consensus size: 899
2770166 AAGTTTCAAA
* *
2770176 AAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTT-AGCGGACCATTGTATGAATTTCCA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACA
* * *
2770240 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCAT
65 AGCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
2770305 CGATCCACGGCTTACGCATCCTGACTCTCTGGCCGACGTAGT---GCCCGCCCGCCCGCTCG---
130 CGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTCCCGCCCGCCCGCCCGCTCGCTC
* *
2770364 TTTCGACAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGT
195 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC-GAGGGT
* * * * * *
2770428 TGCGGCAGCAGGATTGGCAGCATGTAGAGGGGGACCCGACCGATCCACGACTTACGCATCCCG-C
259 TGCGGTAGCAGGATCGACAGCATGCAGAGGGGGA-CCGACCGATCCCCGACTTGCGCATCCCGCC
* * * * * *
2770492 TCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTC
323 CCTCTGGCCGGCTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTC
* * *
2770557 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAAACCGAGGGTTGTGGCAGCA
388 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCA
* *
2770622 CATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCCGAGCAT
452 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
*
2770687 CACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCA
517 CACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCA
*
2770752 CATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
582 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
2770817 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCAATAAAGT
647 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
2770882 GTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
712 GGTCGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TGA
* *
2770947 ATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCCACCAAGTTTGGGCCCAAAAATCTT
776 ATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCT
** * * * ** **
2771012 TCTGAAAAAATTTTAAAAAATTCCGAACCATAAAATGTTTTGAAAATTGTGAAAAATAG
841 TCAAAAAAAAGTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATGAAAAATAG
* * * *
2771071 AAAACGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACGATTGTATGAATTGACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
2771136 GCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
66 GCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * ** *
2771201 GATCCACGGCTTGCGCATACTGTCTCACTGGCCGGTGTAGTACCCGCCTGCCCGCCCGCTCGCTC
131 GATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT-CCCGCCCGCCCGCCCGCTCGCTC
* ** * * **
2771266 ATTTCGTCAGATGGCTTTTGCATACGAAGTTCATTCTCAGTCTAAGATTGGACGGGATCGAGGGT
195 -TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGT
* * * *
2771331 TGTGGTAGCAGGATCGACAGCATGCAAAGGGGTACTCGGCCGATCCCCGACTTGCGCATCCCGCC
259 TGCGGTAGCAGGATCGACAGCATGCAGAGGGGGAC-CGACCGATCCCCGACTTGCGCATCCCGCC
* * * * *
2771396 CCTCTGGCCGACTAAGCGTCCGTACGCTTGTTTCATGGGTGGACTTAGGCATACGAAATTCATTC
323 CCTCTGGCCGGCTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTC
* * *
2771461 CCAGTCTAAACATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGACAGCA
388 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCA
* * *
2771526 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCATCGTCGGAGCAT
452 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
* * * * * * *
2771591 CGCCAGAGCACCTGGCCGACGGCATT-GTGGTTCCGACGATCTGGGGGCCCGGGAGGGGTGTGCG
517 CACCGGAGAACCTGACCGGCGGCATTAG-GGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCG
*
2771655 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCT
580 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
2771720 CGAGAACTCACGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
645 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
2771785 GTGGTCGGAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGAT
710 GTGGTCGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-T
* * ** *
2771850 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGCGTGAAAACT
774 GAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGC-CCAAAAAT
* * *
2771914 CCTTCAAAAAAAAGTTTAAAACATCCCGAGCCGTAAAAAGTTTAAAAAATCATGAAAAATAG
838 CCTTCAAAAAAAAGTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATGAAAAATAG
*
2771976 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAA
1 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-A
* * * *
2772041 AGCTATAAAAATGGCATTGGCAC-ATAGAAATAAGAAGATGTGCCTAAACCCACCAACCACCCTA
65 AGCCATAAAAATGGCATTGGCACGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** * * * *
2772105 TCGATCCATAGCTTGTGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGC
129 TCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT-CCCGCCCGCCCGCCCGCTCGC
* * ** * *
2772170 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGA--
193 TC-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGG
* * *
2772233 GTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCACCAATCCCCGACTTGCGCATCCCGC
257 GTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGACCGATCCCCGACTTGCGCATCCCGC
* *
2772298 CCCTCTGGCTGGCTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATATGGAGTTCATT
322 CCCTCTGGCCGGCTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATT
* * * ** *
2772363 CCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAAGAGTTGCGGCAG
387 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-G-AGGGTTGCGGCAG
* * * *
2772428 CACATTCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGC
450 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGC
* ** *
2772493 ATCACCGGAGAACCTGACCGGCGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGGGCATGTGC
515 ATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGC
* *
2772558 GCACATGATGTGTGATGGGTGCAGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
579 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
2772622 TCGAGAACTCACCCCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAA
644 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
2772686 AAT-GTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTA
709 AGTGGTC-GAAATGGGGACACCTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTA
** * *
2772750 GCCAATTTTTTTTGTGCATG-CAAAAAAAATATAAGGATCACGTCTACAAAGTTTGGGGCCAAAA
772 GTGAA-TTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGCCCAAAA
2772814 CCTCTTTCGA
Statistics
Matches: 1524, Mismatches: 194, Indels: 43
0.87 0.11 0.02
Matches are distributed among these distances:
895 153 0.10
896 2 0.00
899 16 0.01
901 3 0.00
902 80 0.05
903 342 0.22
904 412 0.27
905 355 0.23
906 161 0.11
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTCCCGCCCGCCCGCCCGCTCGCTCT
TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTG
CGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGACCGATCCCCGACTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACC
GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGGTC
GAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTGAATTTT
TTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCAAA
AAAAAGTTTAAAAAATCCCGAACCATAAAAAGTTTAAAAAATCATGAAAAATAG
Found at i:2773193 original size:356 final size:355
Alignment explanation
Indices: 2772487--2773199 Score: 1013
Period size: 357 Copynumber: 2.0 Consensus size: 355
2772477 GCACCATCGT
* * * * * *
2772487 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGGGC
1 CGGAGCATCACCGAAGAACCTGACCGGCAGCATTAGGGTTACGATGATCAGGGGGGCCGGCGGG-
*
2772552 ATGTGCGCACATGATGTGTGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATC
65 ATGTGCGCACATGATGTGTGATGGGTGCAGGTACCTGGCCCTTATATTGGCCCCTATCCCTCATC
* * * *
2772617 AAACCTCGAGAACTCACCCCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAGTAGCCA
130 AAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAATAGCAA
*
2772682 TTAAAATGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTT
195 TTAAAATGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTT
* *
2772747 TTAGCCAATTTTTTTTGTGCATGCAAAAAAAATATAAGGATCACGTCTACAAAGTTTGGGGCCAA
260 TTAGCCAATTTTTTTTGTGCATCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAA
* *
2772812 AACCTCTTTCGAAAAGCAATTTAAAACATCAC
325 AACCTCTTCCGAAAA-CAATTTAAAAAATCAC
** * * *
2772844 CGGAGCATCGTCGAAGAACTTGACCGGTAGCATTAGGGTTACGATGATCAGTGGGGCCGGCGGG-
1 CGGAGCATCACCGAAGAACCTGACCGGCAGCATTAGGGTTACGATGATCAGGGGGGCCGGCGGGA
* *
2772908 TGTGCGCACATGATGTGTGATGGGTGCTGGTACCTGGCCCTTATATTAGGCCCCTATCCTTCATC
66 TGTGCGCACATGATGTGTGATGGGTGCAGGTACCTGGCCCTTATATT-GGCCCCTATCCCTCATC
* * *
2772973 AAAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCA
130 AAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAATAGCA
* * *
2773038 ATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTT
194 ATTAAAATGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTT
* * * *
2773102 TTTAGCTGAA-TTTTTTTGTGCATACCAAAAATAATACAAGGATCATGTCTACCAAGTTTGGGGC
259 TTTAGC-CAATTTTTTTTGTGCAT-CCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGC
*
2773166 CAAAA-ATCCTTCCGAAAA-AATTTTAAAAAATCAC
322 CAAAACCT-CTTCCGAAAACAA-TTTAAAAAATCAC
2773200 GAACCATAAA
Statistics
Matches: 316, Mismatches: 34, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
355 47 0.15
356 121 0.38
357 148 0.47
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (355 bp):
CGGAGCATCACCGAAGAACCTGACCGGCAGCATTAGGGTTACGATGATCAGGGGGGCCGGCGGGA
TGTGCGCACATGATGTGTGATGGGTGCAGGTACCTGGCCCTTATATTGGCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAATAGCAAT
TAAAATGTCTAAAATAGGGACACCTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTT
TAGCCAATTTTTTTTGTGCATCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAA
ACCTCTTCCGAAAACAATTTAAAAAATCAC
Found at i:2773643 original size:26 final size:26
Alignment explanation
Indices: 2773607--2773659 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2773597 GTTGACTTTG
2773607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2773633 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2773659 G
1 G
2773660 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2774542 original size:26 final size:26
Alignment explanation
Indices: 2774506--2774558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2774496 GTTGACTTTG
* *
2774506 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2774532 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2774558 G
1 G
2774559 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2775916 original size:716 final size:717
Alignment explanation
Indices: 2774532--2777425 Score: 4230
Period size: 716 Copynumber: 4.0 Consensus size: 717
2774522 CCTAGTCTAA
* * * * * *
2774532 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC-GACAGTAGATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAG-CAGCACATGCTGG
* * * *
2774596 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCAGGGCACCATCATTGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGCCGGAG
* * *
2774661 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCTGGGGTAGGTGTGCGCACATGATA
130 AACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGG--GGTGTGCGCACATGATA
* * * * *
2774726 TGTGATTGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2774791 ACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
2774856 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
2774921 TGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGTGG-CAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
2774985 AAATTTTAAAAAATCTCGAA-TCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAATCTCGAACT-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
2775049 CTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
2775114 GCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCA-CGTACCACTCTATTGATCCACGGGT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCG-ACCACCCTATCGATCCACGGCT
* *
2775178 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGTCC-GCCTGCCCGCCCCCTCGTTTCATCGG
646 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCG-CCTGCCTGCCCG-CCCCTCGTTTCGTCGG
2775242 TTGGCTTAG
709 TTGGCTTAG
* * * * *
2775251 GCATACGTAGTTCATTCCCAGTGTAAAATCAGACCAGACCGATGGTTGCAGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
2775316 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
2775381 ACTTGACGGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGC
* *
2775445 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2775510 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCATTAGCCATTAAAGTGTCTAAAAAT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAAT
2775575 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2775639 TGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
2775704 GTTTTAAAAAATCTCGAACTATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2775769 GCCATGAAATTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2775833 TTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCTATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCG
*
2775898 CATCCCGTCTCTCTGGTCGACGTAGTGCCCG-C--CC-GCCCG---CTCGTTTCGTTGGTTGGCT
650 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCT
2775956 TAG
715 TAG
* *
2775959 GCATACGAAGTTCATT-CCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
2776023 CTCGGGCATGTCCTGGTGCCGCATTTTTCTTCCCTGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
2776088 ACTTGA-CGAGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCG-GCGGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATAT
* * * * *
2776152 GCAATGGGTGCTAGTGCTTGGCCCTTATATTGGTCCCCTATTCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2776217 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAA
* * *
2776282 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTATCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
2776347 TGTGCATGCCAGCAAGAATACAAGGATCACATCTA-AAACGTTTGGGGCTAAAACTCCTTCCGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAA
* *
2776411 AAAGTTTTAAAAAATC-CTGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCG
452 AAAATTTTAAAAAATCTC-GAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
2776475 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * * *
2776540 TACCTTGGAATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGACT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCT
* * * * * * *
2776605 TGCGCATCCTGTCTCTCTGCTCGGCGTAGTGCCCGCCTGCCCGTCCGCCCGCTCATTTCGTCGAT
646 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCTGCCCGCCC-CTCGTTTCGTCGGT
2776670 TGGCTTAG
710 TGGCTTAG
* * * * *
2776678 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGTAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * ** * * *
2776743 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * ** * *
2776808 ACCTGACCGGTGGCATTGGGGTTCCGGTGAT-GAAGGGGCCAGGAGGTGTGCGCACATGATATGC
131 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGC
2776872 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2776937 CCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
2777002 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2777066 GCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
2777131 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTTTTG
456 TTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
2777196 CCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCGT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
2777261 TGGCATGCAGAAATATGAAAATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTGCGT
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGC
* * * *
2777326 ATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CTCGCCCGCCTACTCGTTTCGTCAGTTGGC
651 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCT-GCCCGCC-CCTCGTTTCGTCGGTTGGC
2777390 TTAG
714 TTAG
*
2777394 GCATACGGAGTTCATTCCCAGTCTAAGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGG
2777426 TAGCACGTAG
Statistics
Matches: 1967, Mismatches: 182, Indels: 55
0.89 0.08 0.02
Matches are distributed among these distances:
706 1 0.00
707 130 0.07
708 43 0.02
709 201 0.10
710 145 0.07
711 125 0.06
712 6 0.00
713 2 0.00
714 3 0.00
715 5 0.00
716 679 0.35
717 172 0.09
718 149 0.08
719 179 0.09
720 125 0.06
721 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGC
GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCTT
AG
Found at i:2779710 original size:26 final size:26
Alignment explanation
Indices: 2779674--2779726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2779664 GTTGAGTTAG
*
2779674 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2779700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2779726 G
1 G
2779727 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2782204 original size:26 final size:26
Alignment explanation
Indices: 2782175--2782227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2782165 GTTGACTTAG
2782175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2782201 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2782227 G
1 G
2782228 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2784398 original size:744 final size:743
Alignment explanation
Indices: 2782973--2784449 Score: 2494
Period size: 744 Copynumber: 2.0 Consensus size: 743
2782963 TTACGATAGT
* *
2782973 AGGATCGACAGCACGCGGAGGGGGACCCGACCGATCCCGGGCTTGCACATCCCGCCCCTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGAACCGACCGATCCCGGGCTTGCACATCCCGCCCCTCTGGCC
* *
2783038 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
66 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* * * *
2783103 GATCGAATTAGACTGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAGATTT
131 GATCGAATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTAGAGCATGTACTGGTGCCAGATTT
* *
2783168 TTCTTCATCGGGGCACCATCCTCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTCG
196 TTCTTCACCGGGGCACCATCCTCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTCA
*
2783233 GTGACTGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATAT
261 GTGACTGGGGGGCTGGGGGTGTGCGCACATGATGTACGATTGGTGCTGGTACTTGGCCCTTATAT
* *
2783298 TGGCCCCCTATCCCTCATCAAACCTTGCGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
326 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
2783363 AGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTTTCTAATGGTCACAAAA
391 AGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
2783428 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACG
456 TCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACG
* * *
2783493 TCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGT
521 TCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
** * **
2783558 TTTGAAAACTGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTATGG
586 TTCAAAAACTGTGAAAAATAGAAAACGAATCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAAG
*
2783623 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCC
651 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCA-GACAGAAATATGAAGATGTGCC
2783687 TAAACCCACCTACCACCCTCCCACCTAGC
715 TAAACCCACCTACCACCCTCCCACCTAGC
*
2783716 AGGATCGACAGCACGCAGAGGGGGAACCGACCGATCCCGGGCTTGCACATCCTGCCCCTCTGGCC
1 AGGATCGACAGCACGCAGAGGGGGAACCGACCGATCCCGGGCTTGCACATCCCGCCCCTCTGGCC
* *
2783781 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
66 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
2783846 GATCGAATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTAGAGCATGTACTGGTGCCAGATTT
131 GATCGAATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTAGAGCATGTACTGGTGCCAGATTT
2783911 TTCTTCACCGGGGCACCATCGC-CGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTC
196 TTCTTCACCGGGGCACCATC-CTCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTC
2783975 AGTGACTGGGGGGGCTGGGGGTGTGCGCACATGATGTACGATTGGTGCTGGTACTTGGCCCTTAT
260 AGTGACT-GGGGGGCTGGGGGTGTGCGCACATGATGTACGATTGGTGCTGGTACTTGGCCCTTAT
2784040 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
324 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
**
2784105 ACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACGTTTTTTTTCAAATGGTCACA
389 ACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGAC-ACTTTTTTCAAATGGTCACA
* *
2784170 AAATCTTGTACACTTCCAGTTTTTAGCTG-ATTTTTTTATGCATGCCAATAAAAATACAAGGATC
453 AAATCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATC
* * * * *
2784234 ATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTTAAAAATCTCGAACTGTAAAA
518 ACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
2784299 AGTTTCAAAAA-TCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCATGTGAAGGCTT
583 AGTTTCAAAAACT-GTGAAAAATAGAAAACGAATCGCCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
2784363 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGCCAGATAGAAATATGGAGATGT
647 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAGACAGAAATATGAAGATGT
*
2784428 GCCTAAACCTACCTACCACCCT
712 GCCTAAACCCACCTACCACCCT
2784450 ATCGATCCAC
Statistics
Matches: 686, Mismatches: 43, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
743 253 0.37
744 388 0.57
745 45 0.07
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (743 bp):
AGGATCGACAGCACGCAGAGGGGGAACCGACCGATCCCGGGCTTGCACATCCCGCCCCTCTGGCC
GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
GATCGAATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTAGAGCATGTACTGGTGCCAGATTT
TTCTTCACCGGGGCACCATCCTCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTTCA
GTGACTGGGGGGCTGGGGGTGTGCGCACATGATGTACGATTGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCCAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAACTGTGAAAAATAGAAAACGAATCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAAG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAGACAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTCCCACCTAGC
Found at i:2784732 original size:26 final size:26
Alignment explanation
Indices: 2784696--2784748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2784686 GTTGACTTAG
*
2784696 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2784722 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2784748 G
1 G
2784749 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2785612 original size:26 final size:26
Alignment explanation
Indices: 2785583--2785635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2785573 GTTGACTTAG
2785583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2785609 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2785635 G
1 G
2785636 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2785723 original size:887 final size:886
Alignment explanation
Indices: 2783820--2786577 Score: 3782
Period size: 887 Copynumber: 3.1 Consensus size: 886
2783810 GTTGACTTAG
* * * * *
2783820 GCATACGGAGTTCATTCCCAATCTAAGATC-GAATCAGACCGAGGGTTGTGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGGCAGCACATGCTGG
* * ** *
2783884 GCTAGAGCATGTACTGGTGCCAGATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGAGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
2783949 AACCTGACCGACAGCATTGGGGTTTC-AGTGA-CTGGGGGGGC-TGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATG
* *
2784011 TACGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2784076 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2784141 ATGGGGACGTTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG-ATTTTT
323 ATGGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
*
2784205 TTATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAA
388 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAA
* * *
2784270 AAAATTTTTAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGT
453 AAAATTTTAAAAAATCTCAAAC-GTAAAAAGTTT-----ATC--GAAAAATAGAAAACGAGTCGT
*
2784335 CTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
2784400 GCTTTGCCA-GATAGAAATATGGAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCT
575 GCTTTGCCACG-TAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * *
2784464 TGCGCATCCCTTCTCTCTAGCCGGTGTAGTGCCCACCCGCCTGCCCGCCAGCTCATTTCGTCGGT
639 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG--T-----CC-GTTCGTTTCGTCGGT
* * *
2784529 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGCGTTGTGGTAGCAG
696 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGGACCAGACTGAGGGTTGCGGTAGCAG
* * * *
2784594 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCACTGGCAGG
760 GATCGACAGCACGCAGAGGGGGACCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGG
* * * * *
2784659 CTAATCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
824 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
2784722 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTCCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2784787 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACAATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
2784852 ACCTAACTGGCGGCATTGGGCTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTG
*
2784917 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2784982 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTTGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2785047 GGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAACTGAATTTTTTT
325 GGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTT
* * *
2785112 GTGCATGCCAATGAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAA
390 GTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAA
* *
2785177 AATTTTAAAAAATCCCAAATCGTAAAAAG-TT-TC-AAAAATAGAAAACGAGTCGTCTTGCCTTG
455 AATTTTAAAAAATCTCAAA-CGTAAAAAGTTTATCGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
2785239 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGCCA
*
2785304 CGTAGAAATAT-GATGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
584 CGTAGAAATATGGA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
2785368 CGTCTCTTTGGCCGACGTAGTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAAGCATACGGA
648 CATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * * *
2785433 GTTCATTCCTAGTCTAAGACTAGATCGGTCTGAGGGTTGCAGCAACAGGATTGACAGCACGGAGA
713 GTTCATTCCCAGTCTAAGA-TGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGA
* * ** *
2785498 GGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGGTGGCTGAGC-CCTCGTACGC
777 GGGGGAC-CGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCC-CGCACGC
*
2785562 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2785609 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCAAGGGTTGGGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
2785674 CTCGAGCATGTCCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGAGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
2785739 ACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGTGGGGGGTGGGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CG-GGGGGGTGTGCGCACATGATGT
* * *
2785804 GTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2785869 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2785934 TGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 TGGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT
* *
2785998 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAA
389 TGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAA
2786063 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCAAA-CGTAAAAAGTTT----A-TC--GAAAAATAGAAAACGAGTCGTC
2786128 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2786193 CTTTGCCACATAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
576 CTTTGCCACGTAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* **
2786258 CGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCCCTCGCCCGCCCGTTCGTTTCGTCCATTG
641 CGCATCCCATCTCTCTGGCCGACGTAGT----G---CC-CGCCCGTCCGTTCGTTTCGTCGGTTG
* *
2786323 GCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACCAGACTGAAGGTT-CGGTAGCAGGA
698 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GGACCAGACTGAGGGTTGCGGTAGCAGGA
* * * * ** ** *
2786387 TCGACAGCATGCAGAGGGGGACCCGACTGATCCCCGACTTACGCATCCC-CCCCTCAAGCCCGTT
762 TCGACAGCACGCAGAGGGGGACCGGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCT
*
2786451 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
826 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2786512 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCGGCAGCACATGCTGG
2786576 GC
65 GC
2786578 CCGGGCACTG
Statistics
Matches: 1642, Mismatches: 179, Indels: 69
0.87 0.09 0.04
Matches are distributed among these distances:
886 2 0.00
887 462 0.28
888 157 0.10
893 1 0.00
894 4 0.00
895 169 0.10
896 1 0.00
897 166 0.10
898 4 0.00
901 1 0.00
902 138 0.08
903 126 0.08
904 251 0.15
905 159 0.10
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTACTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
ATTTTAAAAAATCTCAAACGTAAAAAGTTTATCGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGCCACG
TAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
CTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGG
GACCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2786915 original size:26 final size:26
Alignment explanation
Indices: 2786878--2786930 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2786868 GTTGACTTAG
*
2786878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2786904 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2786930 G
1 G
2786931 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2788888 original size:874 final size:870
Alignment explanation
Indices: 2786912--2789538 Score: 3618
Period size: 874 Copynumber: 3.0 Consensus size: 870
2786902 AAGCATACGA
* * * *
2786912 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGACTCAGGCA
1 AGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGCGGCAG-ACATGCTGG-CTCAGGCA
* *
2786977 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGG---CA---C----CATCGTCGGAGAACCTGACCG
64 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCG
* * * *
2787032 GCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
129 ACGGCATTGGGGTTCCGACGATC--GGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
*
2787097 TGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
192 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
2787162 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACAATT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
2787227 TTTTCAAATGATCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATATTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
2787292 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** * * * *
2787357 ATCCCGAACAGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACAAGTTGTCTTGCCGTGAAAC
452 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
2787422 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
* * *
2787487 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGAATCCCCTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
2787552 CTCTGG-C-CC--A----CG-TTGT--GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
647 CTCTGGCCGCCGTAGGCCCGCTCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * * *
2787606 GAGTTCATTCCCAGCCTAAGATCAGACTGGATCGAGCGTTGCGGCAGTAGGATCGGCAGCACACA
712 GAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* ** * * *
2787671 GAGGGGGTCCCGGCCGATCCCCGGCGTGCGCATCCCGCCCCTCTGGCCT-GCTGAACGCCCGCTC
776 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCGCAC
* *
2787735 GCTCGTTTCATGGATTGACTTAGGCATATGG
840 GCTCGTTTCGTGGGTTGACTTAGGCATATGG
* * * * **
2787766 ATTTCATTCCCAGTCTAAGGTCGGACTGGACCGAGGGTTGCGGCACCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGCGGCA-GACATGCT-GGCTCAGGCA
* * *
2787831 TGTGCTGGTG-TCGTATTTTT-TTCGCCCGGGCACCATCGTCGGAG-AGTCGTCGGAGAACCTGA
64 TGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCA-TCGTCGGAGAACCTGA
* *
2787893 CCGACGGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCT-ATGG
126 CCGACGGCATTGGGGTTCCGACGATC-GGGGG-CTGGGGGGTGTGCGCACATGATGTG-TGATGG
* *
2787957 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCC
188 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2788022 TTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGAC
253 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
2788087 ACTTTTTTAAAATGGCCACAAAATCTTGTACGCTTCCTGTTTTTAGCTG-ATTTTTTTGTGCATG
318 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
2788151 CCAACAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTA
383 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
2788216 AAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
448 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
2788281 AAACTTAACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
513 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCA
* *
2788346 TGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGGGCATCCC
578 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
2788411 GTCTCTCTGGCCGCCGTAGCGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
643 GTCTCTCTGGCCGCCGTAG-GCCCGCTCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * *
2788476 ATACAGAGTTTATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAACA
707 ATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * *** * *
2788541 CGCAGAGGGAGACGCGATCGATCCTCGGCTTGCGCATCTTACCCCTCTGGTTGGCTGAGCGCCTG
772 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
2788606 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
837 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
* * * *
2788640 AGTTCATTCCCAGTCTAAGGTCGGACCGAAATGAAGGTTGCGGCAGACATGCTAGGCTCAGGAAT
1 AGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGCGGCAGACATGCT-GGCTCAGGCAT
2788705 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
65 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACCG
* *
2788770 ATGGCATTGGGGTTCCGATGATCGGGTGGCTGGGAGGGTGTGCGCACATGATGTGTGATGGGTGC
129 ACGGCATTGGGGTTCCGACGATCGGG-GGCTGGG-GGGTGTGCGCACATGATGTGTGATGGGTGC
* * * *
2788835 TGGTACTTGGCCCTTATATTGGACCCGTATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAA
192 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
2788900 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
2788965 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
2789030 CAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTTAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
2789095 ATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
452 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * ***
2789160 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGCCACATA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA
* *
2789225 GAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
2789290 CTCTGGCCGGCGTAGTGCCCCGCTCGCCCGCTCGCCCGCTCATTCGTTTTGTCCGTTGGCCTAGG
647 CTCTGGCCGCCGTAG-G-CCCGCTCGTCCGCCCGCCCG--C-TT-GTTTCGTCGGTTGGCTTAGG
* * * ** **
2789355 CATACGGAGTTCAGTCCCAATCTAAGATCAGACCAGACCGAAGGTT-CGATAGCAGGATCGATAG
706 CATACGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * *
2789419 CATGCAGAGGGGGACCCGATTGATCCCCGGCTTACGCATCCCGCCCCTCAGGCCGGTTGAGTGCC
770 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
* **
2789484 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCGG
835 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
2789520 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
2789539 CATATGGAGT
Statistics
Matches: 1554, Mismatches: 176, Indels: 60
0.87 0.10 0.03
Matches are distributed among these distances:
853 8 0.01
854 67 0.04
855 2 0.00
856 2 0.00
860 1 0.00
863 270 0.17
864 234 0.15
865 2 0.00
867 1 0.00
872 2 0.00
873 42 0.03
874 415 0.27
875 316 0.20
876 17 0.01
878 1 0.00
879 2 0.00
880 143 0.09
881 29 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (870 bp):
AGTTCATTCCCAGTCTAAGGTCGGACCGGACTGAGGGTTGCGGCAGACATGCTGGCTCAGGCATG
TGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATCGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGCCGTAGGCCCGCTCGTCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATATGG
Found at i:2789932 original size:26 final size:26
Alignment explanation
Indices: 2789896--2789948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2789886 GTTGACTTAG
2789896 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
2789922 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
2789948 G
1 G
2789949 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:2790301 original size:392 final size:391
Alignment explanation
Indices: 2789227--2790387 Score: 1638
Period size: 384 Copynumber: 3.0 Consensus size: 391
2789217 GCCACATAGA
* * * * *
2789227 AATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
1 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
* * * * *
2789292 CTGGCCGGCGTAGTGCCCCGCTCGCCCGCTCGCCCGCTCATTCGTTTTGTCCGTTGGCCTAGGCA
66 CTGGCCGACGTAGTG-CCCGCTC-CCCGCCCGCCCGCTCA----TTTCGTCGGTTGGCTTAGGCA
* ** * * * * **
2789357 TACGGAGTTCAGTCCCAATCTAAGATCAGACCAGACCGAAGGT--TCGATAGCAGGATCGATAGC
125 TACGAAGCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTG-TAGTAGGATCGGCAGC
** * ** * * * * **
2789420 ATGCAGAGGGGGACCCGATTGATCCCCGGCTTACGCATCCCGCCCCTCAGGCCGGTTGAGTGCCC
189 ACACAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCACCC
** *
2789485 GTACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
254 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
2789550 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTGG
319 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTGG
2789615 CACGCAAC
384 CACGCAAC
2789623 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
1 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
* * * *
2789688 CTGGCCGATGTAGT----G---CCCGCCCGCCCGTTCGTTTCGTCGGTTGGGTTAGGCATACGAA
66 CTGGCCGACGTAGTGCCCGCTCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAA
* *
2789746 GCCCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTCCTTGTAGTAGGATCGGCAGCACACAGA
131 GCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTGTAGTAGGATCGGCAGCACACAGA
** * *
2789811 GGGGGACCAGACCGATCCCCGACTTGTACATCCCGCCCCTCTGGTCGGTTGACCACACACACGCT
196 GGGGGACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCACCCACACGCT
* *
2789876 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCC
261 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
2789941 AGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTGGCACGCAA
326 AGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTGGCACGCAA
2790006 C
391 C
*
2790007 AATATGAAGATGTGCCTAAACCCACCCACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
1 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
*
2790072 CTGGCCGACGTAGTGCCCGCTCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTACGCATACGA
66 CTGGCCGACGTAGTGCCCGCTC-CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
*
2790137 AGCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTGTAGTAGGATCGGCACCACACAG
130 AGCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTGTAGTAGGATCGGCAGCACACAG
* *
2790202 AGGGGGACCAGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCACCCACACGC
195 AGGGGGACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCACCCACACGC
* * * *
2790267 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
260 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
* * * * * * *
2790332 TAGTCTAAGAGCAGATCGGACTGAGGGTTGCGACAGCACATGCTGGACTCAGGCAT
325 CAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAT
2790388 GTGTTGGTGT
Statistics
Matches: 682, Mismatches: 73, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
383 53 0.08
384 273 0.40
385 2 0.00
387 13 0.02
388 1 0.00
391 1 0.00
392 267 0.39
396 72 0.11
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (391 bp):
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTAACCATGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCTCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAA
GCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTGTAGTAGGATCGGCAGCACACAGA
GGGGGACCAGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCACCCACACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTGGCACGCAA
C
Found at i:2790318 original size:26 final size:26
Alignment explanation
Indices: 2790288--2790340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2790278 GTTGACTTAG
2790288 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
*
2790314 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2790340 G
1 G
2790341 AGCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2791903 original size:892 final size:891
Alignment explanation
Indices: 2789991--2791955 Score: 2882
Period size: 892 Copynumber: 2.2 Consensus size: 891
2789981 GCTGGGCTCG
* * * *
2789991 GGCATTGGCACGCA-ACAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCTAACCATGGC
1 GGCATTGGCA-GCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
2790055 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCACCCGCCCGCCCGCTCATTTCGTCGG
64 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * ** * *
2790120 TTGGCTTACGCATACGAAGCCCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTCCTTGTAGTA
129 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGAT-CTCGTAGTA
*
2790185 GGATCGGCACCACACAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGTCG
193 GGATCGGCACCACACAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCG
2790250 GCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
258 GCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * *
2790315 CATACGAAGTTCATTCCTAGTCTAAGAGCAGATCGGACTGAGGGTTGCGACAGCACATGCTGGAC
323 CATACGAAGTTCATTCCCAGTCTAAGAGCAGATCAGACTAAGGGTTGCGACAGCACATGCTGGAC
* * * *
2790380 TCAGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACG
388 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCATCGGAGAACCTGACCGACG
* * * * *
2790445 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGTGTGCGCACATGATGTGCGATGGGTGCTG
453 GCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGAGAGTACGCACATGATGTACAATGGGTGCTG
* **
2790510 GTACTCAGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
518 GTACTCAGCCCTTATATTGGAACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
2790575 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
583 AGCATTTGAGATTTTAAAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
2790640 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAAA
648 TTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * *
2790705 AAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTGCCGAAAAAATTTTAAAAAAT
713 AAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTGCCAAAAAAATTTTAAAAAAA
* ** * *
2790770 CCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTT
778 CCCGAACCACAAAAAGTTTCAAAAATCATAAAAAAGAGAAAACGAGTCGTCTTGCCGTGAAACTT
* * *
2790835 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAT
843 CACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
* * * *
2790884 GGCATGGGCACCTAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCT
1 GGCATTGGCAGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
2790949 TGCACATCCCGTCTCTCTGGTTGACGCAGTGCTCGCCCGCCCACCCACCCGCTCGTTTCATCGGT
65 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * *
2791014 TAGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTAGACCAGACTGAAGAT-TCGATAGTAG
130 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGATCTCG-TAGTAG
* ** * ** *
2791078 GATCGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC-CTGCCCCTCTGGCCG
194 GATCGGCACCACACAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCTC-GCCCCTCTGGCCG
* * * **
2791142 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
258 GCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
2791207 CATACGAAGTTCATTCCCAGTCTAGGATCGGATCAGA-TCAAGGGTTGTGGCAGCACATGCTAGG
323 CATACGAAGTTCATTCCCAGTCTAAGAGCAGATCAGACT-AAGGGTTGCGACAGCACATGCT-GG
* * *
2791271 -CTCTGGCATGTGCTGGTGCCGTATTTTTCTTCACT-GGGGTACCATCATCGGAGAACCTGACCG
386 ACTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCATCGGAGAACCTGACCG
* * * *
2791334 GCGGTATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGAGTACGCACATGATTTACAATGGGTG
450 ACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGAGAGTACGCACATGATGTACAATGGGTG
**
2791399 CTGGTACTTGGCCCTTATATTGGAACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
515 CTGGTACTCAGCCCTTATATTGGAACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
2791464 AAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
580 AAGAGCATTTGAGATTTTAAAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
2791529 TTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
645 TTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
2791594 ACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
710 AAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTGCCAAAAAAATTTTAAAA
* * *
2791659 AAACCCGAACCACACAAAGTTTCAAAAATCGTAAAAAAGAGAAAACGAGTCGTCTTGCCTTGAAA
775 AAACCCGAACCACAAAAAGTTTCAAAAATCATAAAAAAGAGAAAACGAGTCGTCTTGCCGTGAAA
*
2791724 CTTCACGTAAAGGCTTAAGTGACCATTGTATGAATTTACAAGCAAT-AAAAT
840 CTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
2791775 CGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
1 -GGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* **
2791840 TTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCTTGCTCGTTTCATCGG
64 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * *
2791905 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
129 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
2791956 GGGTTACGAC
Statistics
Matches: 949, Mismatches: 114, Indels: 19
0.88 0.11 0.02
Matches are distributed among these distances:
891 9 0.01
892 783 0.83
893 156 0.16
894 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (891 bp):
GGCATTGGCAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGATCTCGTAGTAGGA
TCGGCACCACACAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCT
GAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
ACGAAGTTCATTCCCAGTCTAAGAGCAGATCAGACTAAGGGTTGCGACAGCACATGCTGGACTCA
GGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCATCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCAGGGGGGCCGGGGGAGAGTACGCACATGATGTACAATGGGTGCTGGTA
CTCAGCCCTTATATTGGAACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTAAAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTGCCAAAAAAATTTTAAAAAAACCC
GAACCACAAAAAGTTTCAAAAATCATAAAAAAGAGAAAACGAGTCGTCTTGCCGTGAAACTTCAC
GTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAAT
Found at i:2794122 original size:892 final size:880
Alignment explanation
Indices: 2792903--2795461 Score: 3317
Period size: 892 Copynumber: 2.9 Consensus size: 880
2792893 CACCATCACT
* * * * ** * *
2792903 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGTGGGGGCGGGGGGGT
1 GGAGCATCGCCGGAGAAACTGTCCGACAACATTGGGGTTCCGACGATCGG-GGGGGCCGGGGAGT
* * * **
2792968 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCTGTATCCCTCATCA
65 GTGCGCACATCACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
2793033 AACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCA
130 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
2793098 TTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
195 TTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
2793163 TTGGTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCCAGTTTGCAGCCAA
260 TAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAA
* * * *
2793228 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAACTTTTGAAAATTATGAAAAATA
323 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA
*
2793293 GAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
388 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
2793358 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
453 AGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
2793423 CGATCCACGGCATGCGCATCCCGTCCCTTTGGCCGGCGTAGCGCCCGCCCACCTGCTTGTTTCGT
518 CGATCCACGGCTTGCGCATCCCGTCCCTTTGGTCGGCGTAGCGCCTGCCCGCC-GCTTGTTTCGT
* *
2793488 TGGTTGGCTTAGGCATACGGGGGTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCA
582 TGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCA
* * * * *
2793553 GCAGGATAGATAGCACGTAGAGGCGGACCCGGTCGATCCCCAGCTTGCGCTTCCTGCCCCTCTGG
647 GCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* *
2793618 TCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCT
712 CCGGCTGAGCGCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCT
2793683 AAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGCGACAGCACATGCT
775 AAG-ATATGGAGTTCATT--CA---T---ATTGGA-CAAGACCGAGGGTTGCGACAGCACATGCT
* *
2793747 GGGCTC-GAGCATGTGCTGGTCTG-C-GTTTTTCTTC-GTCGGGGCACCAACGTA
830 GGGCTCAG-GCATGTGCT-G-CTGCCAATTTTTCTTCACT-GGGGCACCAACGTA
* ** * *
2793798 GGAGCATCGCCGGTGAAACT-TACCGGTAACATTGGGGTTTCGACGATCGGGGGGGCC-GGTAGT
1 GGAGCATCGCCGGAGAAACTGT-CCGACAACATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGT
* * *
2793861 -TG-GC-CTTTACACGTGCGATGGGTGCTGGTACTTGGCCTTTACATTGGCCCCCTATCCCTCAT
65 GTGCGCAC-AT-CACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
2793923 CAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCTAGTAGC
128 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
2793988 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTT
193 CATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
2794053 TTTAGCTGAATTTTTTGGTACATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCC
258 TTTAGCTGAATTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CC
* ** *
2794118 AAAACTCCTTATGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAGAAA
321 AAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
2794183 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
386 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
2794248 CAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACTTACCACCCT
451 CAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * * *
2794313 ATCGATCCACCGCTTGCGCATCCCGTCTCTCTGGTAGGTGTAGCGTCTGCCTGGCCGC-TATTTC
516 ATCGATCCACGGCTTGCGCATCCCGTCCCTTTGGTCGGCGTAGCGCCTGCC-CGCCGCTTGTTTC
* * * *
2794377 GTTGGTTGGCTTAGGTATACGGAGGTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGG
580 GTTGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGG
* * * **
2794442 CAGCAGGATCGGCAGCACATAGAGGGGGAACCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCT
645 CAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* *
2794507 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCC---C
710 GGCCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTC
* *
2794569 --AG---T----TT-A---ATATTGGACAAGATCGAGGGTTGCGCCAGCACATGCTGGGCTCAGG
774 TAAGATATGGAGTTCATTCATATTGGACAAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGG
* * *
2794621 GATGTGCTGCTGCCATATTTTTCTTCACTGGGGCACCATCGTC
839 CATGTGCTGCTGCCA-ATTTTTCTTCACTGGGGCACCAACGTA
* * ** * *
2794664 GGAGCATCGTCGGAGAACCTGTCCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTG
1 GGAGCATCGCCGGAGAAACTGTCCGACAACATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGTG
* * *
2794729 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAA
66 TGCGCACATCACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
2794794 ACCTCGAGAACTCATACCCCCTTAAA-AGGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCA
131 ACCTCAAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
2794858 TTAATGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACATCGAGTTTT
195 TTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
2794923 TAGCTGAATGTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
260 TAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAA
* * * * *
2794988 AACTCCATCTAAAAAAATTTTAAAAAAT-TTGGAACCATAAAAAGTTTCAAAAATCATGAAAAAT
323 AACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAAT
* *
2795052 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTAC
387 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
2795117 AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTA
452 AAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
2795182 TCGATCCACGGCTTGCACATCTCGT-CTTTCTGGTCGGCATAGTGCCTGCCCGCCCGCTCGTTTC
517 TCGATCCACGGCTTGCGCATCCCGTCCCTT-TGGTCGGCGTAGCGCCTGCCCG-CCGCTTGTTTC
** * ** * ** **
2795246 GTCAGTTGGCTGAGGCATACTAAGTTCATTCCCAGTCTAAGATCACACC-AGACCGAGGGTTACG
580 GTTGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGTG
* * * *
2795310 GTAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTC
644 GCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTC
* * * *
2795375 TGGCCGGTTGAGCATCCGCATGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
709 TGGCCGGCTGAGC-GCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAG
*
2795440 TCTAAGAATACGGAGTTCATTC
772 TCTAAG-ATATGGAGTTCATTC
2795462 GTCGGGGCAC
Statistics
Matches: 1443, Mismatches: 176, Indels: 98
0.84 0.10 0.06
Matches are distributed among these distances:
863 3 0.00
864 3 0.00
865 45 0.03
866 68 0.05
867 9 0.01
868 441 0.31
869 173 0.12
870 3 0.00
871 1 0.00
873 1 0.00
875 2 0.00
876 1 0.00
877 2 0.00
881 1 0.00
883 2 0.00
884 1 0.00
885 2 0.00
887 1 0.00
890 1 0.00
891 181 0.13
892 449 0.31
893 6 0.00
894 6 0.00
895 41 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
GGAGCATCGCCGGAGAAACTGTCCGACAACATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGTG
TGCGCACATCACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAC
TCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCCCTTTGGTCGGCGTAGCGCCTGCCCGCCGCTTGTTTCGTTGGT
TGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAG
GATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
CTGAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATA
TGGAGTTCATTCATATTGGACAAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGC
TGCTGCCAATTTTTCTTCACTGGGGCACCAACGTA
Found at i:2796270 original size:26 final size:26
Alignment explanation
Indices: 2796234--2796286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2796224 GTTGACTTAG
2796234 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2796260 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2796286 G
1 G
2796287 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2797153 original size:26 final size:26
Alignment explanation
Indices: 2797117--2797172 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
2797107 TGGGTTAACT
2797117 TAAGCATACGGAGTTCATTCCC-AGTC
1 TAAGCATACGGAGTTCATTCCCGA-TC
2797143 TAAGCATACGGAGTTCATTCCCGATC
1 TAAGCATACGGAGTTCATTCCCGATC
2797169 TAAG
1 TAAG
2797173 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCGATC
Found at i:2798053 original size:26 final size:26
Alignment explanation
Indices: 2798017--2798072 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2798007 TGGGCTAACT
**
2798017 TAAGCATACAGAGTTCATTCGTAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2798043 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2798069 TAAG
1 TAAG
2798073 ATCAGACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:2798756 original size:899 final size:899
Alignment explanation
Indices: 2795459--2804806 Score: 11573
Period size: 899 Copynumber: 10.5 Consensus size: 899
2795449 ACGGAGTTCA
* ** * *
2795459 TTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCACTGGGGTTCCGACA
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
2795524 ATCGGGGGGGCCGCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGACCCTTATAT
66 ATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
2795589 TTGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA--TT--
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
2795650 ---TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
2795712 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCACG
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
2795777 TCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
** *
2795842 TTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
390 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
2795907 GACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGGATGTAGAAATATGAAGATGTGCCA
455 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
** * *
2795972 AAACCCACCTACCACCCTATCGATAGACGGCTTGCGCATCCCGTCTCTTTGACCGGCGTAGTGCC
520 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
2796037 CGCCCGCCTGCCGGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
585 CGCCCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** ** * * * ***
2796102 AGATCAGACCGGAC-CAAAGTTGTAGCAGCAGGATCGGCAGCACACAGTGGGGGACCCTTTCGAT
646 AGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * *
2796166 CCCTGGCTTGCGCAT-CCGCCCCTCTGGCCGGTTAAGCACCCGCACGCTCGTTTCGTGGGTTGAC
711 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
2796230 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCGCAGTCTAAGATCAGACC
776 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * *
2796295 -AGACTAAGGGTTGCGGCAGCAAATGCTAGGCTCGGGAATGTTCTGGTGCCGCATTTGTC
841 GA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
2796354 TTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
2796419 ATC-GGGGGGCCAGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
66 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
2796483 GGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
131 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
2796548 GGTTTGCTGCCACTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAAT
196 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
2796612 CTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
261 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * * *
2796677 CTACCAAGTTTGGGGCCAAAACAACTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
326 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
2796742 TCCAAAATCATGAAAAAT-GAAAAACGAGTCATCTTGCCATGAAACGTCACGTGAAGGCTTAAGG
391 TCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
2796806 GAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGTTGTACCC
455 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
* * * * * *
2796871 AAACCCATCTACCACCCTACCGATCCACGGCTTACGCAT-CCGGCT-T-T-G--GTCG-A-AG-C
520 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
2796927 AG--TGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
585 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * * * * *
2796990 CGGACTAGAAGGAGGGTTGCAGCAGCAGGATCAGTAGCACACAGAGGGGGACTCGACCGATCCCC
650 CAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * *
2797055 GGCTTGCGTATCCCACCCCGCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAA
715 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
2797120 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-GATCTAAGATCAGACC-AG
780 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGA-
* *
2797183 ACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
843 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
2797240 TTCATCGGGGCACCATCGTCGGAGCGTCG-CTGGAGAAGCTGACCGACGGAATTGGGGTTCCGGA
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCC-GA
* *
2797304 -GATCCGGGGGGCCGGGGCGGATGTGCGCACATGATGTGCGATGGGTGCTGGGACTTGGCCCTTA
64 CGATCGGGGGGGCCGGGG-GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * * *
2797368 TATTGGCCCCCTATCCTTCATCAACCCTCAAGAACTCACACCCTCTTAAAGAGCTTTTGAGATTT
127 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
2797433 TACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
192 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
2797498 AAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTGTGCATGCCAACAAAAATACAACGATC
257 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* **
2797562 ACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCACAAA
322 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
2797626 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
386 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
2797691 AAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCAGGTAGAGATATGAAGATGT
451 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
* *
2797756 GCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAG
516 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
2797821 TGCCCACCCGTCCGCCCGCCCGTTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
581 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * ** * ****
2797886 AGATCAGACCAGACTGAGGGTTGTAGCAGCAGGATCAACAGCACGCAGAGAGGGACCCTTTTGAT
646 AGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * *
2797951 CCCCGGTTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTAAC
711 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * ** *
2798016 TTAAGCATACAGAGTTCATTCGTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
776 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * *
2798081 GAAATGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTC
841 GAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * ** * *
2798140 TTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACG
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
2798205 ATCGTGGGTGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATT
66 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
2798270 GGCCCCCTATCCCTCATCGAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACA
131 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
2798335 GGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
196 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
2798400 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGCGT
261 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * *
2798465 CTACCAAGTTCAGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTT
326 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
2798530 TCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACCTCACGTGAAGGCTTATGGG
391 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** * *
2798595 ACCATTGGATGAATTTACAAGATATAAAAATGGCATTGGTATGTAGAAATATGAAGATGCGCCTA
456 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* * *
2798660 AACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCC
521 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * *
2798725 GTCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC
586 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
2798790 GGACCAGAC-CAGAGGTTACGGTAGCAGGATCAGCAGCATGCAGAGGGCGACCCGACCGATCCCC
651 AGACCAGACTGAG-GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * ** **
2798854 GGCTTGGGCGTCTCACTGCTCTGGTTGGCTGAGCGCCC-CACGCTCGTTTCGTGGGTTGACTTAG
715 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
2798918 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGAATGGAC
780 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* ** * *
2798983 CGAGGGTAGC-GCAGCACATGCTGGAATCGAGCATGTGCTGGTGCCGCATTTTTT
845 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * *
2799037 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCA
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
2799102 ATC-GGGGGGCCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
66 ATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
2799166 TGGCCCCGTATCCTTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
2799231 AGGTTTGCTGCCAGTAGCCACTAAAGTGT-TCGAAATGGGGACAC-TTTTTCAAATGGTCACAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
2799294 ATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTTTGTGCATGCCAACAAAATTACAAGGATCAC
259 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
2799359 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAATG
324 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
2799424 TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
389 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *** * *
2799489 GGACCGTTGTATGAATTTTCAAGCCAT-ATAATGGCATTGGCAAACAGAAATATGAAGATCTACC
454 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
* *
2799553 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGTGC
519 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
2799618 CCGCCCGCCCTTCCGCCTGCTCGTGTCGTCGGTTGGCTTAGGCATTCGGAGTTCATTCCCAGTCT
584 CCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
2799683 AAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGGTAGCAAGCAGTA-GGGGACCCGACCG
645 AAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGACCG
*** * * *
2799747 ATCCCCAATTTGCGCATCTCGCTTTACCCCTCTGGCTGGCTGAGCG-CCG-ACGTTTCGTTTCGT
709 ATCCCCGGCTTGCGCATC-C-C---GCCCCTCTGGCCGGCTGAGCGCCCGCACG-CTCGTTTCGT
** * *
2799810 --GTTGACTTAGGCATTACAAAGTTCATTTCCTAGTCTAAACATACGGAGTT-ATTCCCAGTCTA
768 GGGTTGACTTAGGCA-TACGGAGTTCA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** * *
2799872 AGATCGGACC-AGACCGA-GGTTGCGGCCGCACATGCCAGGCTCGGG-ATGTGC-GGTGTCGTAT
831 AGATCAGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
2799933 TTTTC
895 TTTTC
** *
2799938 TTCACCGGGGCACCATCG-C----CA------GAGAACCTGATCGACGGCATT-GGGTTCCGACG
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
2799991 GTCGGGGAGGAGGACTAGGCTGGGGGGTGTGCGCATATGATTGTGCGAATGGGTGCTGGTACTTG
66 ATC-GGG-GG-GG-C----C-GGGGGGTGTGCGCACATGA-TGTGCG-ATGGGTGCTGGTACTTG
* * *
2800056 GCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCGAAAACTCACA-CCCATTAAGGAGCATTT
120 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
2800118 GAGATTTTACAGGTTTGC-GCCAGTAG-CATTAAAGTGTCT-AATTAGGGACCACTTTTTTTTC-
185 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-CAC--TTTTTTCA
* *
2800179 AATAGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAA
247 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
** * * *
2800244 TACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTC-CAAAAAATTTAAAAAAATCTCG
312 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
** ** * * * * * *
2800308 AACCACAAAAAGTTTTGAATATCGTGAAAAATAAAAAATGAGTCGTCTTGCCAGGATACTTCACG
377 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
2800373 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAT-AAAA----ATT-GCAT-T-G-----
442 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * * * *
2800425 -G--CA--CG-C-AAACCCACCTACCACCTTATCGATACACGGCTTGCGCATCCCGTCTCTTTGG
507 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * * * *
2800483 TTGGGGTAAAGCTCGCCCGCCCGTCCGCCCGCTCATTTCATCGGTTAGCTTAGCCATACGGAGTT
572 CCGGCGT--AG-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * *
2800548 -ATTCCCAGTCTAAGATTGGACC-GAAC-GAGGGTTGTGGTAGCAGGATCTGTAGCACGCAAAAG
633 CATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
* * * * * * *
2800610 GGGACCGGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCGTCCGCACGCTTG
697 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * **
2800675 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-TCTAAGCATATAGAGTTCA-T-CCAG
762 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** * *
2800737 TCTAAGATC-GAACGGA-CGA-GGATGCGGCAGCACAT-CTGCGGC-CTTTGCGTTTGCT-GT--
827 TCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTG-GGCTC-GGGCATGTGCTGGTGC
2800794 CG-ATTTTTC
890 CGCATTTTTC
*
2800803 -TCGTC-GGGCACCATC--CGGA--ATCTTGTCGGAGAACCTGACC--C-GCATT-GGGTTTCGA
1 TTCGTCGGGGCACCATCGTCGGAGCATC--GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
2800858 CGATC-GCGGGGCC-GGGGGTGTGC-CACAATGATGTGCG-T--GTGCTGGGTACTTGGCCCTTA
64 CGATCGGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTA
2800917 TATTGGCCCCC-AT-CCTCA-CAAACCTC-AGGAACTCACA-CCCCTTAAA-A--A-TTGAGATT
127 TATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGA-T
* * * * * *
2800973 TTTACAGGGTTGCTGCCAGTAG-CATTAAGGTTTGATGGAAT-GGG--ACTATTTTTCAAATGAT
190 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACT-TTTTTCAAATGGT
* *
2801034 CAC-AAATCTTG-ACACTT-GAGTTTTTAGCTCAA-TTTTTTGT--A----AAAAAAAAT-C-AG
253 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
2801087 GATCA-GT-TACCCAG-TTGGGG-CAAAA--CCTTC--AAAAAA-ATTAAAAAATCTC-AACTGT
318 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
2801142 --AAA-TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGA
383 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
2801204 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGTAGAAATATGAAGA
448 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
* *
2801269 TGTGACTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
513 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
2801334 TAATGCCCGCTCGCCCGCCTGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCC
578 TAGTGCCCGCCCGCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * *
2801399 CAGTCTAAGATTGGACCGGACTGAGGGTTGCGGTAGCAAGATCGGTAGCACACAGAGGGGGACCC
639 CAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* ** * * * *
2801464 GACCGAT--CCGAGCTTGCGCATCCCGCCCCTCTAGCCGATTGAGCTCCCGCATGCTCATTTTGT
704 GACCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
** * ** *
2801527 GCCTTGACTTAGGCATATGGAGTTCATTCCCAGTCTGGGCATACGGAGTTGATTCCCAGTCTAAG
768 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * * *
2801592 ATGGGACCGGATCGAGGGTTACGGCAGCACATGCTGGTCTCGGGCTTGTGCTGGTGTCGTATTTT
833 ATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
2801657 TC
898 TC
* * ** *
2801659 ATCGCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACG
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
2801724 ATCGGGGGGGTCGGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
66 ATCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
2801789 TTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
129 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
2801854 CAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGATCACAAA
194 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
2801919 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
259 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
2801984 GTCTACCAAGTTTGGGGTCAAAACTCCTT-TCGAAAAAATTTTTAAAAATCCCAAACCATAAAAA
324 GTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
2802048 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
388 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
2802113 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
453 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
* *
2802178 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTC-ACGTAGT
518 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGT
* * * * **
2802242 GCTCGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCCTAGGCATACAAAGTTCATT-CCATGTCTA
582 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTA
* * * * *
2802306 AGATCATA-CGGA-TCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
646 AGATCAGACCAGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * * *
2802369 TCCCCAGCTTGCGCTTCCCGCGCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGA
710 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
2802434 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGAT
775 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC--A-
* * * * * *
2802499 CGGACCGGACCGGGGGTTACGGTAGCATATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
837 --GACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * **
2802564 CTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTG
1 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
2802629 ATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATAT
66 ATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
2802694 TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
2802757 AGGTTTGCTGCCAGTAGCTACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
2802822 TCTTGTACACTTCGAGTTTTTAGCTG-ATATTTTTTGCGCATGCCAACAAAAATACAAGGATCAC
260 TCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
2802886 GTCTACTAAGTTTGGGGCCAAAACTCCTTAC-GAAAAAATTTAAAAAAATCCCGAACCGTAAAAA
324 GTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
2802950 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT-AGGTGAAGGCTTAA
388 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
2803014 GGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAGGATGTGG
453 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
** * * * *
2803079 CTAAACCCATGTACCATCCTATCAATCCACGGCTTCCGCATCCCGTCTCTCT-GCCGGCATAGT-
518 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
2803142 ---GCCCGCCCGCTCACTCG-TTCGTCAGTTCGCTTAGGCATACGGAGTTCATTCCCAGTTTAAG
583 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
2803203 ATTAGA-TAGGA-TCGAGGGTTGTGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCAACCGAT
648 ATCAGACCA-GACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * * * * *
2803266 CCCCGGCTTGCACATCCCGCCCCTCTAGTCGG-TAGAGCGCCTGCAAGCTCGTTTCGTGAGTTAA
711 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * **
2803330 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCGTTCCCAGTCGAAGATGGGAC
775 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
2803395 C-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTC
840 CGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* ** * * * * * * * *
2803455 ATCACCGGGGCACCATC-ACAGAAGCAACGTCGGAGAACCTGGCCAACGACATTAGGGTTCCAAC
1 TTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * * * *
2803519 GATCGGGGGGGCCGGGGGGGACGTTCGCACATGATGCGCAATGGTTGCTGGTACTGGGCCCTTAT
65 GATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
2803584 ATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTT
128 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
2803649 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
193 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
2803714 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCT-CATGCCAACAAAAATACAAGGATC
258 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATC
* * *
2803778 ACGTCTACCAAGTTTGGGGTCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
322 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * *
2803843 CA-TTTTAAAAATCGTGAAATATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
387 -AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
2803907 AAGGGACCAATGTATGAACTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
451 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
* * * * * * *
2803972 TCGTAAACCCACCTACCATCCTATAGATCCACGACTTGCGCATCCCGTCTCTCTAGCCGGTGTAG
516 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
**
2804037 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGAAGTCTA
581 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
2804102 AGATCGGACCAGACCGAGGGTTACGGTAGCAAGATCGGTAGCACACAGAGGGGGACCCGACCGAT
646 AGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * * * *
2804167 CCCTGGCTTGCGCTTCCTGCCCCTATGGCCGGCTGAGCGCCCACAGGCTCGTTTCGTGGGTTGAC
711 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
2804232 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GTAT
776 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * * *
2804296 CGGACTGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTC
840 CGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
2804356 TTCG-CTGGGGCATCATCGTC-GAGCATCGTCGGAGAACCTGATCGGCGGGATTGGGGTTCCGAC
1 TTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
2804419 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATAT
65 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
2804484 CGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
130 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
2804549 AGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
195 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
2804614 TCTTGTACACTTCTAGTTTTTTGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
260 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
2804679 ACTACCAAGTTTGGGGCCAAAAATCATTCTGAAAAAATTATAAAAAATCCCGAACCGCAAAAAGC
325 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-
* * * * *
2804744 TTT-GAAAATCGT-AAAAACAAGAAAA-GAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAA
389 TTTCAAAAATCATGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
2804806 G
453 G
2804807 TAGCTTACGT
Statistics
Matches: 7333, Mismatches: 867, Indels: 504
0.84 0.10 0.06
Matches are distributed among these distances:
825 83 0.01
826 7 0.00
828 3 0.00
829 11 0.00
830 9 0.00
831 9 0.00
832 1 0.00
833 6 0.00
834 4 0.00
835 6 0.00
836 2 0.00
837 7 0.00
838 1 0.00
839 9 0.00
841 12 0.00
842 2 0.00
843 3 0.00
844 3 0.00
845 91 0.01
846 107 0.01
847 64 0.01
848 15 0.00
849 27 0.00
850 20 0.00
851 20 0.00
852 29 0.00
853 36 0.00
854 24 0.00
855 6 0.00
856 11 0.00
857 12 0.00
858 24 0.00
860 21 0.00
862 5 0.00
863 15 0.00
864 19 0.00
865 14 0.00
866 7 0.00
867 23 0.00
868 28 0.00
869 34 0.00
870 60 0.01
871 23 0.00
872 29 0.00
873 30 0.00
874 11 0.00
875 55 0.01
876 22 0.00
877 113 0.02
878 18 0.00
879 17 0.00
880 12 0.00
881 16 0.00
882 14 0.00
883 9 0.00
884 59 0.01
885 57 0.01
886 211 0.03
887 13 0.00
888 3 0.00
889 409 0.06
890 75 0.01
891 133 0.02
892 51 0.01
893 148 0.02
894 271 0.04
895 339 0.05
896 533 0.07
897 429 0.06
898 629 0.09
899 886 0.12
900 630 0.09
901 418 0.06
902 277 0.04
903 87 0.01
904 290 0.04
905 126 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
Found at i:2798954 original size:26 final size:26
Alignment explanation
Indices: 2798918--2798970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2798908 GTTGACTTAG
2798918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2798944 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2798970 G
1 G
2798971 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2801567 original size:26 final size:26
Alignment explanation
Indices: 2801538--2801588 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2801528 CCTTGACTTA
*
2801538 GGCATATGGAGTTCATTCCCAGTCTG
1 GGCATACGGAGTTCATTCCCAGTCTG
*
2801564 GGCATACGGAGTTGATTCCCAGTCT
1 GGCATACGGAGTTCATTCCCAGTCT
2801589 AAGATGGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (26 bp):
GGCATACGGAGTTCATTCCCAGTCTG
Found at i:2802469 original size:26 final size:26
Alignment explanation
Indices: 2802439--2802491 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2802429 GTTGACTTAG
2802439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2802465 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2802491 G
1 G
2802492 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2804272 original size:26 final size:26
Alignment explanation
Indices: 2804236--2804288 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2804226 GTTGACTTAG
2804236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2804262 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2804288 G
1 G
2804289 ATCGTATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2804925 original size:26 final size:26
Alignment explanation
Indices: 2804873--2804925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2804863 GTTGACTTAG
*
2804873 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2804899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2804925 G
1 G
2804926 ACCGGACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2805828 original size:25 final size:26
Alignment explanation
Indices: 2805777--2805829 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
2805767 GTTGACTTAG
2805777 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
2805803 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
2805828 GC
1 GC
2805830 TCGGACCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:2807250 original size:715 final size:717
Alignment explanation
Indices: 2805839--2807256 Score: 2087
Period size: 715 Copynumber: 2.0 Consensus size: 717
2805829 CTCGGACCGG
* * * * * *
2805839 ACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGGATGTGCTGGTGCCGCATTTTTCTTCATCGA
1 ACCAAGGGTTGCGACAACACATACTGGGCTCGGGCATGTGCTAGTGCCGCAATTTTCTTCACCGA
* * * * * * *
2805904 GGTACCATCGTCGGAGCAGGGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG
66 GGCACCATCGCCGGAGCAGCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCAACGATCGGGGG
*
2805969 GGCCGAGGGGTGTGCGCACACGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
131 GGCCGAGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** *
2806034 ATCCCTCTTCAAACCTCGAGAACTCACACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTG
196 ATCCCTCAGCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2806099 CCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAAACTTGAACAG
261 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGAACAC
* *
2806164 TTCGATTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
326 TTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *** *
2806229 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATC
391 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAACTTTCAAAAATC
*
2806294 GTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
456 ATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
2806359 TGAATTTGCAAGGCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCT
521 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACAT
* * * * * *
2806424 ACCAACCTATCGGTCCACGGCTTATGCATCCCATCTTTCTGGCTGACGTAGTGCCCGCCCGCCCG
586 ACCAACCTATCGATCAACGGCTTACGCATCCCATCTCTCTGGCAGACGTAGTGCCCGCCCGCCCA
* * *
2806489 CCCGCCCGTTCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCCAGATCCGATC
651 CCCGCCCGCTCGTTTCGACGGTTAGCTTAGGCATACGGACTTCATTCCCAGTCCCAGATCCGATC
2806554 AA
716 AA
* * * * * *
2806556 ACCAAGGGTTGCGATAGCGCATACTGGGCTCGGGCATGTGGTAGTGCCGCAATTTTCTTCGCCGG
1 ACCAAGGGTTGCGACAACACATACTGGGCTCGGGCATGTGCTAGTGCCGCAATTTTCTTCACCGA
* *
2806621 GGCACCATCGCCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTTCAACGATC-GGGG
66 GGCACCATCGCCGGAGCAGCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCAACGATCGGGGG
* * *
2806685 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-TTGGCCCGCT
131 GGCCGAGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2806749 ATCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
196 ATCCCTCAGCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
2806814 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACA
260 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGAACA
* * *
2806879 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATATACAAGGATCACG-CTACGAA
325 CTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAA
** *
2806943 GTTTGGGGCCAAAAATCCTTTCC-AAAAAATTTT-AAAAATCCCAAACTGCAAAAACTTTCGAAA
389 GTTTGGGGCCAAAAATCC-TTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAACTTTCAAAA
* *
2807006 ATCATGAAAAATAGAAAACGATTCG-CATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
453 ATCATGAAAAACAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
2807070 TGTATGAATTTACAAGCCATAAGAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
517 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCC
* * * * *
2807135 ACATACCACCCTATCGATCAATGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCT
582 ACATACCAACCTATCGATCAACGGCTTACGCATCCCATCTCTCTGG-CAGACGTAGTGCCCGCCC
* *
2807199 GCCCACCCGCCTGCTCGTTTC-ATCGGTTAGTTTAGGCATACGGACTTCATTCCCAGTC
646 GCCCACCCGCCCGCTCGTTTCGA-CGGTTAGCTTAGGCATACGGACTTCATTCCCAGTC
2807257 TAAGTTTAGA
Statistics
Matches: 624, Mismatches: 71, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
714 2 0.00
715 277 0.44
716 219 0.35
717 126 0.20
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (717 bp):
ACCAAGGGTTGCGACAACACATACTGGGCTCGGGCATGTGCTAGTGCCGCAATTTTCTTCACCGA
GGCACCATCGCCGGAGCAGCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCAACGATCGGGGG
GGCCGAGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCAGCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGAACAC
TTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAACTTTCAAAAATC
ATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACAT
ACCAACCTATCGATCAACGGCTTACGCATCCCATCTCTCTGGCAGACGTAGTGCCCGCCCGCCCA
CCCGCCCGCTCGTTTCGACGGTTAGCTTAGGCATACGGACTTCATTCCCAGTCCCAGATCCGATC
AA
Found at i:2807422 original size:32 final size:26
Alignment explanation
Indices: 2807392--2807444 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2807382 GGCTGCATAG
*
2807392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2807418 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2807444 G
1 G
2807445 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2808326 original size:26 final size:26
Alignment explanation
Indices: 2808297--2808347 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2808287 TGACTTAGGG
2808297 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
2808323 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
2808348 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:2809237 original size:26 final size:26
Alignment explanation
Indices: 2809201--2809250 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2809191 GACTTAGGCT
*
2809201 TACGGTGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
2809227 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2809251 ATTAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:2809363 original size:185 final size:185
Alignment explanation
Indices: 2809039--2809464 Score: 546
Period size: 185 Copynumber: 2.3 Consensus size: 185
2809029 GTTGGCTTAG
* * * * * * * * *
2809039 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAAGGTTCCAGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCAACA
* *
2809104 GCACGCAGAGGAGGACCCGACCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCCGCTGAGTGC
66 GCACGCAGAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCGC
* * * *
2809169 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCTTACGGTGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2809224 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCAACA
* * * *** * * * * *
2809289 GCACGTAGAGGGGGACTCGGTTGATCCCCGGCTTGTGCATCTCGCCCCTCTGGTCGGCTGAGCGC
66 GCACGCAGAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCGC
*
2809354 CCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2809409 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCA
2809465 CATGTTGGGC
Statistics
Matches: 204, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
185 204 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCAACA
GCACGCAGAGGAGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCCGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2809419 original size:26 final size:26
Alignment explanation
Indices: 2809383--2809435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2809373 GTCGACTTAG
*
2809383 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2809409 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2809435 G
1 G
2809436 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2811225 original size:26 final size:26
Alignment explanation
Indices: 2811189--2811241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2811179 GTTGACTTAG
* *
2811189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
2811215 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
2811241 G
1 G
2811242 AACAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:2813858 original size:26 final size:26
Alignment explanation
Indices: 2813829--2813881 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2813819 GTTGACTTAG
2813829 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2813855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2813881 G
1 G
2813882 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2814757 original size:26 final size:26
Alignment explanation
Indices: 2814728--2814780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2814718 GTTGAGTTGG
2814728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2814754 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2814780 G
1 G
2814781 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2815373 original size:897 final size:899
Alignment explanation
Indices: 2812956--2818105 Score: 6736
Period size: 899 Copynumber: 5.8 Consensus size: 899
2812946 GTTGACTTAG
* * * * **
2812956 GCATACGGAGTTCATT-GCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * * *
2813020 CTCGGGCTTGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACTATCGCCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
2813085 ACCTGACCAGCAGCGTTGGGGTTTCGGCGATCGGGGGGGCCAGGGGGGGTGTTCGCACAGGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
** *
2813150 GCGATGGGTGCTGGTACTTCACCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2813215 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2813280 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
2813345 GTGCATGCCAAAAAAAAAACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
2813409 AATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2813474 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2813539 ATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATTCACAGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2813604 GTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTCA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * *
2813669 GGCATACGGAGTGCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTTCGACAGCAAGATCGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGC
* * * * *
2813734 AGCACGCAGAGGGGGACTCGGCCGATCCCTGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAGCG
* * *
2813799 CCCGCATGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2813855 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
2813920 CTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGACACCATCGCCAGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * * *
2813985 ACCTCAACGGCGGCATTAGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTACGGACATGATGAG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
2814050 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCAT
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
2814115 GCCCCCTTAAAGAGCATTTGAGATTTTACATATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2814180 GGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTC-AATTTTGTAGCTGAAGTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTGAATTTTTTT
* * ** *
2814244 GTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTT-GGGCTGAAACACCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
2814308 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
2814373 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCACAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
2814438 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2814503 GCATCCCGTCTCTCTGGCCGGTC-TAGTGCTCGCCTGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
649 GCATCCCGTCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** *
2814567 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAAGATCGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGG
* * * ** * * * *
2814632 CAGCACGTAGAGGGGGACCCGGCCGATCCCCGCCTAACGTATCCCACCCATCTAGCCGGTTGAGT
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAGC
* * *
2814697 GCCCGTACGCTCGTTTCGTGGGTTGAGTTGGGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2814754 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
2814819 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** **
2814884 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGTGCACGCATGTGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
2814948 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCAGA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2815013 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTTTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2815078 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
2815143 GCATGCCAACAAAAATAGAAGGGTCACGTCTACCAAGTTTGGGG-CAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
2815207 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
2815272 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2815337 TGGCACATAGTAATGTAAAGATATGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
2815402 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** **
2815467 CATACGGAGTTCATTCCCATTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCGGCAG
716 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAG
* * * * *
2815532 CACACAGAAGGGGA--C--CCGA-------CTTGCCTATCCTGCCCCTCTAGCCGGTTGAGCGCC
781 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAGCGCC
2815586 CGCACGCTCGTTTCGT-GG--G---T-----T---GAG----TT---AG-----
846 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
2815614 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
2815679 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGTACCAT---C---GCA---T--GAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
2815733 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
2815797 GATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
2815862 CCCCCTTCAAGAGCATCTGAGATTTTACAGGTTTTCTGCCAGTAGCAATTAAAGTGTCCGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2815927 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAATTTTTAGCCGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
2815992 GCATGCCAACAAAAATACAAGGATCACGTCTACCTTGTTTGGGACAAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * * * *
2816057 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGAGTCGTCTTG
456 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
2816122 CCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTACGAATTTAGAAGCCATAAAAGTGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
2816187 TGGTGCGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
2816252 ATCCCGCCTCTCTGGTCGGGGTAGTTCCCGCCTGGCCACCCGCCCGCTCGTTTCATCGGTTGACT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C---CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * * * * * *
2816317 TAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGTAGGATTG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCG
** * * * * * *
2816382 GCAGCATACAGAGGGGGACCCCATCGATCCTCGACTTGTGGATCCCGCCCCTCTGGCCGGTTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAG
* * * * * * *
2816447 CGCCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGTGTTCAATCCTAGTATAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
2816505 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGATCAAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
2816570 CTC-AGGCATGGGCTGGGGCCGTATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCG-CTGGA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGA
* * *
2816633 GAACCTGACCGGCAGCAATGGGGTTCCGACGATCGGGTGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
2816698 T-CTGATGGGTGTTGGTACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACT
193 TGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
2816762 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* **
2816827 AATAGGGACACTTTTTTCAAATTATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** **
2816892 TTGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAGGTTTGGGGTGAAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* ** *
2816957 AAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATGTTGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
2817022 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
2817087 GCATTGGCAAGCAGAAATATGAAGTTGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2817152 ACACATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTT
* * *
2817217 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGGCTGAGGGTTACGGCAGCAAG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAG
* * * * *
2817282 ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTGTCCCGCCCTTCTGGTCGAT
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGT
* * *
2817347 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTATAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
2817409 GCATACGGAGTTCATTCCCAGTCTAAGATCATATCAGATCC-ATGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTACGGCAGCACATGCTGG
* * * *
2817473 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGAAGCATCACCGAAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT---C---G
* * *
2817538 CATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAACGATC-GGGGGGCCGGGGGGGTGTGC
124 --T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGC
* *
2817602 GCACATGATGTACGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
183 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * **
2817667 TCGAGAACTCACACCTCATTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAAAAGCCATTAA
248 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
2817732 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGATGTTTTT-G
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAG
* * * * *
2817796 CTGAATTTTTTTGTGCACGCCAACAGAAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAAA
377 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
2817861 TCCTTCCAAAAAAATTTTAAAAAATC-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
442 TCCTTCCAAAAAAATTTTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
2817925 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
506 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
2817990 CCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCG
571 CCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*** * * *
2818055 ATCTGTGGCTTACGCATCCTGTCTCTCTGCCCGGCGTAGTGCCCGCCCGCC
636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
2818106 TGTAAAAATA
Statistics
Matches: 3718, Mismatches: 448, Indels: 159
0.86 0.10 0.04
Matches are distributed among these distances:
848 8 0.00
849 269 0.07
850 219 0.06
851 2 0.00
854 98 0.03
856 1 0.00
857 1 0.00
858 3 0.00
860 100 0.03
865 45 0.01
866 2 0.00
868 3 0.00
871 1 0.00
872 3 0.00
875 1 0.00
876 1 0.00
879 2 0.00
880 1 0.00
883 2 0.00
885 2 0.00
886 45 0.01
891 93 0.03
893 4 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 554 0.15
898 25 0.01
899 805 0.22
900 133 0.04
902 33 0.01
903 10 0.00
904 735 0.20
905 4 0.00
907 1 0.00
910 4 0.00
911 2 0.00
912 1 0.00
913 1 0.00
914 461 0.12
915 39 0.01
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2817413 original size:26 final size:26
Alignment explanation
Indices: 2817383--2817435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2817373 GTTGACTTAG
*
2817383 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
2817409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
2817435 G
1 G
2817436 ATCATATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:2817520 original size:904 final size:899
Alignment explanation
Indices: 2815614--2818107 Score: 3397
Period size: 904 Copynumber: 2.8 Consensus size: 899
2815604 GTTGAGTTAG
* *
2815614 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATCC-AGGGTTATGGCAGCACATGCTGG
* * * *
2815678 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGTACCAT---C--GCA----T-GAGA
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGAGCATCGCTGGAGA
* *
2815733 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTCT
*
2815797 GATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2815862 CCCCCTTCAAGAGCATCTGAGATTTTACAGGTTT-TCTGCCAGTAGCAATTAAAGTGTCCGAAAT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGT-TGCCAGTAGCAATTAAAGTGTCTGAAAT
* * * *
2815926 GGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAATTTTTAGCCGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
2815991 TGCATGCCAACAAAAATACAAGGATCACGTCTACCTTGTTTGGGACAAAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAA
* *
2816056 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGAGTCGTCTT
453 ATTTTAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAAT-GTGAAAAATAGAAAATGAGTCGTCTT
* * * *
2816121 GCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTACGAATTTAGAAGCCATAAAAGTGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * * *
2816186 TTGGTGCGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
581 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
* * * * * *
2816251 CATCCCGCCTCTCTGGTCGGGGTAGTTCCCGCCTGGCC-ACCCGCCCGCTCGTTTCATCGGTTGA
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCTGCCCGCCCGCTCGTTTCATCGGTTGA
* *** * * * *
2816315 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGTAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAAGAT
* * * * * *
2816380 TGGCAGCATACAGAGGGGGACCCCATCGATCCTCGACTTGTGGATCCCGCCCCTCTGGCCGGTTG
775 CGGCAGCACACAGAGGGGGACCCCACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGATTG
*
2816445 AGCGCCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGTGTTCAATCCTAGTATAA
840 AGCGCCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTATAA
* * *
2816505 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGATCAAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGATCCAGGGTTATGGCAGCACATGCTGGG
* * * * *
2816570 CTC-AGGCATGGGCTGGGGCCGTATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCGCTGGAG
65 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACC-GAGCATCGCTGGAG
* * *
2816634 AACCTGACCGGCAGCAATGGGGTTCCGACGATCGGGTGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
2816699 CTGATGGGTGTTGGTACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
192 CTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2816764 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTCTAAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAA
* **
2816829 TAGGGACACTTTTTTCAAATTATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** **
2816894 GTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAGGTTTGGGGTGAAAACTCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAA
* *
2816959 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTAAAAAATGTTGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATC-CAAACCGTAAAAAGTTTCAAAAATG-TGAAAAATAGAAAATGAGTCGTCT
2817024 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2817089 ATTGGCAAGCAGAAATATGAAGTTGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTAC
580 ATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTAC
* * * * *
2817154 ACATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGA
* * *
2817219 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGGCTGAGGGTTACGGCAGCAAGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAAGAT
* * * * * *
2817284 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTG-TCCCGCCCTTCTGGTCGATT
775 CGGCAGCACACAGAGGGGGACCCCACCGATCCCCGACTTGCG-GATCCCGCCCCTCTGGCCGATT
* * *
2817348 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTATAA
839 GAGCGCCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTATAA
** * * * *
2817409 GCATACGGAGTTCATTCCCAGTCTAAGATCATATCAGATCCATGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATCCAGGGTTATGGCAGCACATGCTGGG
*
2817474 CTCGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGAAGCATCACCGAAGC
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCG-AGCAT---C---GC
* *
2817539 ATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGCCGGGGGGGTGTGCGC
123 -T----GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
*
2817604 ACATGATGTAC-GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
183 ACATGATGT-CTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * ** *
2817668 CGAGAACTCACACCTCATTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAAAAGCCATTAAA
247 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAA
*
2817733 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGATGTTTTT-GC
312 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGC
* * * *
2817797 TGAATTTTTTTGTGCACGCCAACAGAAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAAA-
376 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAAC
*
2817861 TCCTTCCAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
440 TCCTTCCAAAAAAATTTTAAAAAATCC-AAACCGTAAAAAGTTTCAAAAAT-GTGAAAAATAGAA
* * * *
2817926 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
503 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGC
* *
2817991 CATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
568 CATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
** * *
2818056 TCTGTGGCTTACGCATCCTGTCTCTCTGCCCGGCGTAGTGCCCGCCCGCCTG
633 TCCATGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG
2818108 TAAAAATACA
Statistics
Matches: 1401, Mismatches: 162, Indels: 57
0.86 0.10 0.04
Matches are distributed among these distances:
890 1 0.00
891 91 0.06
892 1 0.00
894 1 0.00
897 3 0.00
901 1 0.00
902 36 0.03
903 11 0.01
904 738 0.53
905 4 0.00
907 1 0.00
910 2 0.00
911 1 0.00
913 1 0.00
914 463 0.33
915 46 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGATCCAGGGTTATGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGAGCATCGCTGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTCTGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCAAACCGTAAAAAGTTTCAAAAATGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACAGCAGCAAGATCGGCAG
CACACAGAGGGGGACCCCACCGATCCCCGACTTGCGGATCCCGCCCCTCTGGCCGATTGAGCGCC
CACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTATAA
Found at i:2817532 original size:11 final size:11
Alignment explanation
Indices: 2817516--2817548 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2817506 GTCGGGGCAC
2817516 CATCACCGAAG
1 CATCACCGAAG
2817527 CATCACCGAAG
1 CATCACCGAAG
2817538 CATCACCGAAG
1 CATCACCGAAG
2817549 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.36, G:0.18, T:0.09
Consensus pattern (11 bp):
CATCACCGAAG
Found at i:2818339 original size:288 final size:289
Alignment explanation
Indices: 2817822--2818393 Score: 959
Period size: 288 Copynumber: 2.0 Consensus size: 289
2817812 ACGCCAACAG
* *
2817822 AAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
1 AAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
* *
2817887 CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
66 CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCATCTTGCCATGAAACTTC
*
2817952 ACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
131 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
** **
2818017 ATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTGTGGCTTACGCATCCTGTCTCTC
196 ATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
* *
2818082 TGCCCGGCGTAGTGCCCGCCCGCCTGTAA
261 TGCCCGGCATACTGCCCGCCCGCCTGTAA
*
2818111 AAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAA-TTTAAAAAAT-
1 AAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
* * *
2818174 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTT
66 CT-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCATCTTGCCATGAAACTT
2818239 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
130 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
2818304 AATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCT
195 AATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCT
*
2818369 CTGGCCGGCATACTGCCCGCCCGCC
260 CTGCCCGGCATACTGCCCGCCCGCC
2818394 CGCCCGCCCG
Statistics
Matches: 264, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
287 2 0.01
288 212 0.80
289 50 0.19
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (289 bp):
AAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
CTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
TGCCCGGCATACTGCCCGCCCGCCTGTAA
Found at i:2818630 original size:26 final size:26
Alignment explanation
Indices: 2818593--2818645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2818583 GTTGACTTAG
*
2818593 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
2818619 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
2818645 G
1 G
2818646 ATCATTTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:2819950 original size:901 final size:901
Alignment explanation
Indices: 2818109--2827572 Score: 8816
Period size: 901 Copynumber: 10.4 Consensus size: 901
2818099 GCCCGCCTGT
* * *
2818109 AAAAATACAAGGATCATGTCTACCAAGTTTGGCGCCAAAACTCCTTCC-AAAAAAATTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
2818173 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
2818238 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * * *
2818303 AAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
2818368 TCTGGCCGGCATACTGCCCGCCCGCCCGCCCGCCCGCTCGCACGCTCGTTTCGTCGGTTGGCTTA
261 TCTGGTCGACGTA--G--TGCCCGCCCGCCCG--C-CT-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
2818433 GGCATAAGGAGTTCATTCCCAATCTAAGATCGGACCAGAACGAGGGTTACGGTAGCAAGATCGGT
318 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
2818498 AGCACACAGAGGGAGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGGGTG
383 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
2818563 CCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGAA
448 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *** * * * *
2818628 GTTCATTCCCAGTCTAAGATCATTTCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGACAT
513 GGTCATTCCCAGTCTAAGATCAGACCGGA-TGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
2818693 ATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCG
576 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCG
* * * *
2818758 ACGACAATGGGGTTCCGACGATCGGGTGGGC-CGGGGGGGTGTGCGCACATGATGTGTGATGGGT
641 GCGGCATTGGGGTTCCGACGATCGGG-GGGCGC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
2818822 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
704 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
2818887 AAAGAGCATTTGAGATTTTACAGCTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGAGGACAC
769 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
2818951 TTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCC
834 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
2819016 AAC
899 AAA
*
2819019 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-TCCTTCTGAAAAAATTTTAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAA
* ** * *
2819083 ATCCCAAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
65 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
2819148 TTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
2819213 GAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCTACGGCTTACGCATCCTGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
2819278 CTCTGATCGATGTAGTGCCCGCCCGCCCGCCTG-TCGCTCGTTTCATCGGTTGGCTTAAGCATAC
260 CTCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
2819342 AGAGTTCATTCCCAATCTAAGATTGGACCGAACCAAGGGTTGCAGCAACAGGATCGACAGCACGC
325 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * *
2819407 AGAGGGGGACCCGGCCTATCCCCGGCCTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAC
390 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
2819472 GCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCCAGGCATACGGAGGTCATT
455 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATT
* * * *
2819537 CCCACTCTAAGATCGGACCGGACTGATGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGG
520 CCCAGTCTAAGATCAGACCGGA-TGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
2819602 TGTCGCATTTTTCTTCGTCGGGGCACCCTCGCCAGAACATCACCGGAGAACCTGACCGGCGGCAT
583 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCAT
* * * *
2819667 TAGGGTTCCGACGATCGGGGGGCGTGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACT
648 TGGGGTTCCGACGATCGGGGGGCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2819732 TGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
713 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
2819797 TTGAGATTTCATAGGTTTGTTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
778 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
2819861 ATGGTCACAAAATCTTGCACACTTTGAGCTTTTACCTGAATTTTTTTATGCATGCCAAA
843 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
2819920 AAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAATTGCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
2819985 TCCCGAACCACAAAAAGTTTGAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTTCCATGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
2820050 TCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACACAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *** * *
2820115 AAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCAATCCACATTTTGTGCATCCCGTATC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
2820180 TCTGGTCGGCATAGTGCCCGACCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
261 TCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * ** *
2820245 GAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGTAGCAGCAAGATCGGCAGCACGCA
326 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * ** **
2820310 AATGGGGG-CCC-GACTATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGTGC
391 GA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
2820373 GCTTGTTTCTTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
455 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATT
* * *
2820438 CCCAGTCTAAGATCAGAACGGATCGAGGTTTGCGACAGCACCTGCTGGGCTCGGGCATGTGCTGG
520 CCCAGTCTAAGATCAGACCGGAT-GAGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * * *
2820503 TGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCAT
583 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCAT
* ** * * *
2820568 TAGGGTTTTGACGATCGGGGGG-GCCGAGGGGTGTGCGCACATGATGTGCGATGGGTACCGGTAC
648 TGGGGTTCCGACGATCGGGGGGCG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
2820632 TTGGCCCTTATATTAG-CCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCA
712 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
2820696 TTTGAGATTTTATAGGTTTGCTACCA-TAGCGATTAAAGTGTCAGAAATGGGGACACTTTTTTCA
777 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
2820760 AATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
842 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
2820820 AAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
2820885 TCTCGAACC-CAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
66 TCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
2820949 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
2821014 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTGTGCATCCTGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * *
2821079 CTCTGGTCGACGTAGTGCCCGATCG--C-CC-GCCCGCTC-ATTCTGTCAGTTGGCTTAGGCATA
260 CTCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATA
* ** * * * * ** *
2821139 CAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTT-CTGGCAACAAGATCGATAGCAT
324 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCAC
* * * ** ***
2821203 ACAGAGGGGGACCCGACCGAT-CCCAGCTTGCGCATCTTGTATCTCTGGCCGACGTAGTGCTCGA
388 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-C--C---G-GCT-GA
* * *
2821267 CCGCCCGCCCGTC-CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
445 --G--CGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *** ** * ** * *** * *
2821331 ATCAGACCGGATCGAGGGTTGTGGCAG-C-AGGATCGGTAGCACGCAAATGGGGACCCGACTATC
505 --CATA-CGGA--G-GTCAT-TCCCAGTCTAAGATC---AG-AC-CGGATGAGGTTGCGGC-AGC
* ** * ** * * * ** * *
2821394 CCCGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAATGCCCGTACGCTTGT-TTCGT-GGGTTCA
557 ACATGC-TG-G--GCTCG-GGC-AT-G--TGCTG-GTG-CCG--CATTTTTCTTCGTCGGG-GCA
* ** *** * ** ** *** * *
2821457 CTTAGGCATACG-GAGTTCATTC-CCAGTCTAAGCAT-ACAAAG-TTCATTCCCAG-T-CTAAGA
608 C-----CAT-CGCCAGAGCA-TCACC-GGAGAA-CCTGAC-CGGCGGCATT-GGGGTTCCGACGA
* * ** ** * * * * * **
2821516 TCGGACTGGAC-CAAGGTTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGT-GTT-GCAT
662 TCGG--GGGGCGCGGGGGGTG-TGC-GCACATGATGTG--CGATG--GGTGCTGGTACTTGGCCC
* * * * ** * * * **** *
2821577 TTTTGTTTGCCAGGGCACCATAGCCGGAGCATC--GCC-GGAGAACCTGACTGGTGCATT---G-
719 TTATATTGGCC----C-CC-TATCC--CTCATCAAACCTCGAGAA-CTCAC-ACCCCCTTAAAGA
** **** * * * * ** * * *
2821635 GGGTTTCGACGATGGGGGGGCCCGGGGGTGTGCGTACAAGATGAGTGATT--GGTG-CTGGTACT
774 GCATTT-GA-GAT-----TTTAC--AGGTTTGC-TGCCAG-T-AGCCATTAAAGTGTCT-GAAAT
* * * * ** * * ** *** ***
2821697 -TGG-CCCTTATATTGGCCACCTATCCCTCATC-AAACCTTGAGAACTCACACCCCCTTAAAGAG
826 GGGGACACTT-T-TT--TCA--AAT-GGTCA-CAAAATCTT--GTA--CACTTCGAGTT-TTTAG
* *
2821759 CATTTGAGATTTTACAGGTTTACTGCCAGTAGCC-AT
878 C---TGA-ATTTT-----TTT-GTG-CA-T-GCCAAA
* * * * * ** * *
2821795 TAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAG
1 AAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA-
** ** * * **
2821855 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
51 -----A----AA---AATT-T---T----A-AAAAAT-C-CCGAAC-CG-C-AAAAAGTTT----
* * * * * *
2821920 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAA
86 -CAAAAAT-CGT--G-AAAAA---TAGAAAA---CG----------AG--TCG----TCTTG--C
* * *
2821985 AATAGAAAATGAGTCCTCTTCCTATGAAACTTCACGTGAAAGCTTAAGAGACCATTGTATGAATT
122 CAT-G--AA--A---------C--T------TCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
2822050 TACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGGTGTGCCTAAACCCACCTACCAAC
165 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
2822115 CTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGG-CCAGCATAGTGCCCGCCTGCCCGCCCGC
230 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGA-CGTAGTGCCCGCCCGCCCGCCTGC
* * * *
2822179 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATTGGACCGGATC
294 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** * * * * * * * * * * *
2822244 GAGCATTGTGGCAGCACGATCGACAGCATGTAAAGGGGGACCCGACTGATCCACGGCTTCCGTAT
359 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * *
2822309 CCC-CCCCTCTGGCTGACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGT
424 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * * *
2822373 TCATTCCCAGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTAGCG
489 TCATTCCCAGTCTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAGACCGGA-TGA-GGTTGCG
* * * * *
2822438 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCATC-ACA
552 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCA
** * **
2822502 GGAGCATCGTCAGAGAACCTGACCGGCGGCATTGCTGTTCCGACGATCGGGGGG-GCCGGGGGGT
617 -GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCG-CGGGGGGT
* * *
2822566 GTGCGCACATGATGTGCAATGGGTGGTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
680 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
2822631 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
745 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
2822696 TTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACCTCGAGTTTT
810 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * **
2822761 TAGCTGAATTGTTTTGCGCGT-AAAAA
875 TAGCTGAATTTTTTTGTGCATGCCAAA
* * *
2822787 AAAAATACAAGCATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** ** * *
2822852 TCCTAAACTACAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
2822917 TCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCGTACAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
2822982 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** *
2823047 TCTGGCCGGTGTAGTGCCCGCCCACCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
261 TCTGGTCGACGTAGTGCCCGCCCGCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * *
2823112 TACGGAGTTCATTTCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGCCAGCAGGATTGGCAGCA
322 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * ** *
2823177 CGCAGAGGGGGACCCGGTCGATCCTCAGCTTGCACATCCCGCCCC-CTTGGCCGGCTAAATGCGC
387 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCTGAGCGCCC
* ** * * * * *
2823241 GCATGCTTTTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCTCAATCTAAGCATACGGAGTT
451 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGT
* * * * * * * *
2823306 CATTCCCAGTCGAAGATCGGATCGGACCGAGGGTTACGACAGCATATGCTAGGCTCGGGCATGTG
516 CATTCCCAGTCTAAGATCAGACCGGA-TGA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * * *
2823371 CTGGTGCAGCAGTTTTCTTCG-CCAGGTACCAT---C---G-----CCGGAGAACTTGACCGACG
579 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCG
* * *
2823424 GCATTGGGGTTCCGGCGATCTGGGGGG-TCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTG
644 GCATTGGGGTTCCGACGATC-GGGGGGCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
2823488 GTCCTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
708 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
2823553 AGCATTTGAGCTTTTACAGGTTTGCTTCTAGTAGCCATTAAAGTGTC-CAAATTGGGGATACTTT
773 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTT
* *
2823617 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTTTTGCATG-CAA
837 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
2823681 A
901 A
* * * *
2823682 CAAAAATACAAGGATCACGTATACCAAGTTTGGCGCCAAAACTCTTTTCGAAAAAATTTT-AAAA
1 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
2823746 ATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAATGAGTCATCTTGCCATGAAC
65 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAA
* *
2823811 CTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
129 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
2823876 AGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
2823941 TCTCTGG-CTGGCATAGTGCCCGCCCG--C-CC-GCCCGCTGGTTTCGTCGGTTGGCTTAGGCAT
259 TCTCTGGTC-GACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** * *
2824001 ACGGAGTTCATTCCCAGTCTAAGAAT-GGACTGGACCGAGGGTTACGACAATAGGATCGACAGTA
323 ACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * * **
2824065 CGTAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCGCCCG
387 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
2824130 CAAGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---A-G--
452 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTC
*
2824183 A-T--C---C---GATCAGACC-GA-G-GGTTGCGGCACCACATGCTGGGCTCGGGCATGTGCTG
517 ATTCCCAGTCTAAGATCAGACCGGATGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** ** * * *
2824236 GTGCAGCATTTTTCTTCGCCGGCACACCATCGCCAGAGCA-CTGTCGGAGAACCTGATCGACGGT
582 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC-ACCGGAGAACCTGACCGGCGGC
*
2824300 ATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
646 ATTGGGGTTCCGACGATCGGGGGGCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
2824365 CTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGC
711 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2824430 ATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCC
776 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
2824495 AAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAC
841 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
2824556 AAAAATAAAAGCATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTACAAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*** *
2824621 TCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
2824686 TCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
2824751 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
2824816 TCTGGCCGACGTAGTGCCCGTCGGCCCG-CT---CGCTCGTTTCGTCGGTTGGCTTAGGCATACG
261 TCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * *
2824877 GAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCAGTAGTAGGTTCGGCAGCACGTA
326 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * *
2824942 GAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACG
391 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
2825007 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---GG------
456 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATTC
* * *
2825061 --A-TC--AGA-CAGA--GG-T----TTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
521 CCAGTCTAAGATCAGACCGGATGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * ** * * ** **
2825113 CGTATTTTTCTTCGTCAGGGTGCCACCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTAA
586 CGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* * *
2825178 GGTTCC-AGTGGTCGGGGGGC-CGGGGGGCTGTGCCCACATGATGTGCGATGGGTGCTGGTACTT
651 GGTTCCGA-CGATCGGGGGGCGCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
** * ** *
2825241 GGCCCTTATATTAACCCCCTATCCCTCATCAAATCTATAGAAATCACACCCCCTTAAAGAGCATT
714 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
2825306 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGACACTTTATTCAAA
779 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
2825371 AGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCGTGCCAAT
844 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * * * *
2825428 AAAAATACAAGAATCATGTCTACAAAGTTTGGGGACAAAAATCCATT-CGAAAAATTTTTTAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAA
2825492 ATCCCGAACCGCAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
65 ATCCCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** * ***
2825556 CTTCACGTGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACAT
129 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
**
2825621 AGAAATATGAAGATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
194 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
2825686 TCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
259 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * * *
2825751 CGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCAAGGGTTGCGGTAGCAGGATTGGCAGCATG
324 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * * * *
2825816 CAAAGGGGGACCTGGCTGATTCTCGGCTTGTGCATCCCGCCCCTATGACCGGCTGAGCGCTCGCA
389 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * * *
2825881 CCCTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCTAGTC-AAGCATATGGAGTTCAT
454 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCAT
* ** * *
2825945 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCACATGTTGCGCTCGGGCATGTGCTG
519 TCCCAGTCTAAGATCAGACCGGAT-GA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
2826010 GTGCCACATTTTT-TAAT-GCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGG
582 GTGCCGCATTTTTCT--TCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGG
* * * * *
2826073 CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGGTGTGCGGACATGATGTGTGATGGGTGCA
645 CATTGGGGTTCCGACGATC-GGGGGG-CGCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCT
* *
2826138 GGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAA
707 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
2826202 GAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTT
772 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
2826267 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTACATGCCAAC
837 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
2826332 AAGAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTACTTTCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
2826397 TCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * *
2826462 TCGCGTCAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATCGGCACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
2826527 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
2826592 TCTGGTCGACATAGTGCCCGCCCGCCCACCTGGCCGCTCATTTCGTCAGTTGGCTTAGGCATGCA
261 TCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
2826657 GAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCAGGATTGGCAGCACGTA
326 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * * *
2826722 GAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTTTGGCCGGTTGAGCGCCCGTACG
391 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
2826787 CTCGTTTCGTGGGTTGACTT-GGCATACGGAGTTCATTCCCAG--T---C-TA---A-G--ATT-
456 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATTC
* *
2826838 ---G-----GACCAGACC-GA-G-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTAC
521 CCAGTCTAAGATCAGACCGGATGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * * *
2826892 CACATTTTTCCTCATCGGGGTACCAT---C---G--T---TGAAGAACCTGACCAGCGACATTGG
586 CGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* *
2826946 GGTTCCGACGATCAGGGGTGCCGCGGAAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
651 GGTTCCGACGATC-GGGG-GGCGCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
**
2827011 TGGCCCTTATATTGTTCCCCTATCCCAT-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
713 TGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
2827075 TTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCA
777 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
2827140 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AA
842 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
2827199 CAAAATACAAGGATCACATCTACCAAGTTTGGGTCCAAAACACCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
2827264 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
66 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
2827329 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
2827394 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCACATCCTGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * * *
2827459 TCTGG-CTGACGTAGTGCTTGCCCGCCCGCCCGCTCGCTAGTTTCGTCGGTTGGCTTAGGAATAC
261 TCTGGTC-GACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
2827523 GGAGTTCATTCCCAGTCTAAGATCGCATCGCACCGAGGGTTGTGGCAGCA
325 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
2827573 CATGCTAGGC
Statistics
Matches: 7038, Mismatches: 1145, Indels: 785
0.78 0.13 0.09
Matches are distributed among these distances:
862 49 0.01
863 6 0.00
864 1 0.00
866 4 0.00
867 456 0.06
868 131 0.02
869 1 0.00
870 2 0.00
872 282 0.04
873 704 0.10
874 271 0.04
875 11 0.00
876 179 0.03
877 6 0.00
878 59 0.01
879 1 0.00
880 2 0.00
882 4 0.00
883 8 0.00
886 1 0.00
888 173 0.02
889 5 0.00
891 3 0.00
892 8 0.00
893 3 0.00
894 226 0.03
895 69 0.01
896 317 0.05
897 6 0.00
898 2 0.00
899 4 0.00
900 424 0.06
901 971 0.14
902 408 0.06
903 146 0.02
904 508 0.07
905 125 0.02
906 144 0.02
907 14 0.00
908 51 0.01
909 2 0.00
910 44 0.01
911 210 0.03
913 6 0.00
914 2 0.00
915 4 0.00
916 6 0.00
917 10 0.00
918 6 0.00
919 1 0.00
920 2 0.00
921 4 0.00
922 2 0.00
923 3 0.00
924 1 0.00
925 4 0.00
926 4 0.00
927 2 0.00
928 5 0.00
929 8 0.00
930 4 0.00
931 2 0.00
934 14 0.00
935 20 0.00
936 8 0.00
937 10 0.00
938 9 0.00
939 6 0.00
940 6 0.00
941 2 0.00
942 4 0.00
943 4 0.00
944 16 0.00
945 11 0.00
946 3 0.00
947 8 0.00
948 1 0.00
950 2 0.00
951 16 0.00
952 8 0.00
953 8 0.00
954 1 0.00
955 8 0.00
956 7 0.00
957 3 0.00
958 10 0.00
959 3 0.00
960 2 0.00
961 6 0.00
962 7 0.00
963 3 0.00
966 4 0.00
967 5 0.00
969 1 0.00
970 2 0.00
972 3 0.00
973 4 0.00
974 2 0.00
975 6 0.00
976 4 0.00
977 1 0.00
978 3 0.00
979 8 0.00
981 7 0.00
982 6 0.00
983 5 0.00
984 5 0.00
985 5 0.00
986 6 0.00
987 1 0.00
988 8 0.00
989 3 0.00
990 1 0.00
991 1 0.00
992 5 0.00
993 1 0.00
994 3 0.00
995 1 0.00
996 3 0.00
997 2 0.00
998 1 0.00
1001 5 0.00
1002 3 0.00
1005 4 0.00
1006 12 0.00
1007 1 0.00
1008 5 0.00
1010 9 0.00
1011 10 0.00
1013 7 0.00
1014 1 0.00
1015 11 0.00
1016 17 0.00
1017 6 0.00
1018 1 0.00
1019 1 0.00
1020 9 0.00
1021 3 0.00
1022 10 0.00
1023 15 0.00
1024 187 0.03
1025 229 0.03
1026 178 0.03
1027 152 0.02
1028 141 0.02
1029 121 0.02
1030 210 0.03
1031 176 0.03
1032 183 0.03
1033 117 0.02
1034 117 0.02
1035 110 0.02
1036 131 0.02
1037 113 0.02
1038 153 0.02
1039 142 0.02
1040 602 0.09
1041 197 0.03
1042 126 0.02
1043 97 0.01
1044 69 0.01
1045 81 0.01
1046 87 0.01
1047 110 0.02
1048 647 0.09
1049 295 0.04
1050 84 0.01
1051 87 0.01
1052 106 0.02
1053 185 0.03
1054 173 0.02
1055 117 0.02
1056 131 0.02
1057 65 0.01
1058 183 0.03
1059 50 0.01
1060 74 0.01
1061 125 0.02
1062 256 0.04
1063 159 0.02
1064 96 0.01
1065 76 0.01
1066 188 0.03
1067 78 0.01
1068 75 0.01
1069 113 0.02
1070 145 0.02
1071 45 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATTC
CCAGTCTAAGATCAGACCGGATGAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
GGTTCCGACGATCGGGGGGCGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
Found at i:2820432 original size:26 final size:26
Alignment explanation
Indices: 2820396--2820448 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2820386 GTTCACTTAG
2820396 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2820422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2820448 G
1 G
2820449 ATCAGAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2821385 original size:170 final size:166
Alignment explanation
Indices: 2821063--2821389 Score: 420
Period size: 170 Copynumber: 1.9 Consensus size: 166
2821053 CAATCCACGT
* * * *
2821063 CTTGTGCATCCTGTCTCTCTGGTCGACGTAGTGCCCGATCGCCCGCCCGCTCATTCTGTCAGTTG
1 CTTGCGCATCCTGTATCTCTGGCCGACGTAGTGCCCGACCGCCCGCCCGCTCATTCTGTCAGTTG
*
2821128 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTCTGGCAACAAGA
66 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTCTGGCAACAAGA
* *
2821193 TCGATAGCATACAGAGGGGGACCCGACCGATCCCAG
131 TCGATAGCACACAAAGGGGGACCCGACCGATCCCAG
* * * * *
2821229 CTTGCGCATCTTGTATCTCTGGCCGACGTAGTGCTCGACCGCCCGCCCGTCCGCTCGTTTTGTCG
1 CTTGCGCATCCTGTATCTCTGGCCGACGTAGTGCCCGACCGCCCG--C--CCGCTCATTCTGTCA
* * * * * *
2821294 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGC
62 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTCTGGCAAC
* * * *
2821359 AGGATCGGTAGCACGCAAATGGGGACCCGAC
127 AAGATCGATAGCACACAAAGGGGGACCCGAC
2821390 TATCCCCGGC
Statistics
Matches: 135, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
166 39 0.29
168 1 0.01
170 95 0.70
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (166 bp):
CTTGCGCATCCTGTATCTCTGGCCGACGTAGTGCCCGACCGCCCGCCCGCTCATTCTGTCAGTTG
GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTCTGGCAACAAGA
TCGATAGCACACAAAGGGGGACCCGACCGATCCCAG
Found at i:2821421 original size:170 final size:170
Alignment explanation
Indices: 2821102--2821423 Score: 412
Period size: 170 Copynumber: 1.9 Consensus size: 170
2821092 AGTGCCCGAT
2821102 CGCCCGCCCGCTCATTCTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
1 CGCCCGCCCGCTCATTCTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
* * *
2821167 CTGGACCAAGGGTTCTGGCAACAAGATCGATAGCATACAGAGGGGGACCCGACCGATCCCAGCTT
66 CCGGACCAAGGGTTCTGGCAACAAGATCGATAGCACACAAAGGGGGACCCGACCGATCCCAGCTT
* * *
2821232 GCGCATCTTGTATCTCTGGCCGACGTAGTGCTCGACCGCC
131 GCGCATCTCGCACCTCTGGCCGACGTAGTGCTCGACCGCC
* * * * * *
2821272 CGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCATTCTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
* * * * * * * * * *
2821337 CCGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAATGGGGACCCGA-CTATCCCCGGCT
66 CCGGACCAAGGGTTCTGGCAACAAGATCGATAGCACACAAAGGGGGACCCGACCGAT-CCCAGCT
* *
2821401 TGTGCATCTCGCCCCTCTGGCCG
130 TGCGCATCTCGCACCTCTGGCCG
2821424 GCTGAATGCC
Statistics
Matches: 127, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
169 3 0.02
170 124 0.98
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (170 bp):
CGCCCGCCCGCTCATTCTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
CCGGACCAAGGGTTCTGGCAACAAGATCGATAGCACACAAAGGGGGACCCGACCGATCCCAGCTT
GCGCATCTCGCACCTCTGGCCGACGTAGTGCTCGACCGCC
Found at i:2822392 original size:26 final size:26
Alignment explanation
Indices: 2822362--2822414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2822352 GTTGACTTAG
*
2822362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2822388 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2822414 G
1 G
2822415 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.